LOCUS       DAMQWL010000001       143985 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.001, whole genome shotgun sequence.
ACCESSION   DAMQWL010000001 DAMQWL010000000
VERSION     DAMQWL010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 143985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 143985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..143985
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.001"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            199..1197
                     /locus_tag="PF788_000001"
     CDS             199..1197
                     /locus_tag="PF788_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDG6302297.1"
                     /translation="MKKVSIKDVAREAGVSVTTVSHILNHNDSRFSATTIKNVHAVSE
                     RLGYAPNKHAKQLRGSKIQTIGVILPSLTNPFFSALMQSIHDHKPSDVDLCFLTSTAT
                     DLYDNIKHLIDRGIDGLIIAQYISSPDALNNYLKKHHVPYVVLDQNDHQGYTDFVRTN
                     EYQGGQLAAQHLIELGHNHMIIVAPYDMMANMSTRVAGFVDTLRANQLPEPQIVHTEL
                     SKRGGLTIVDDIMVQSATAIFAINDELAIGILRGLIEHGISIPKDISLIGYDDIDYAA
                     YVSPPLTTVAQPITDIGKTSLTLLLQRLQHLDKSIDMIELPTTLKIRATTGYHLSN"
     gene            1429..2310
                     /gene="rbsU"
                     /locus_tag="PF788_000002"
     CDS             1429..2310
                     /gene="rbsU"
                     /locus_tag="PF788_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose transporter RbsU"
                     /protein_id="HDG6302298.1"
                     /translation="MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIF
                     AIILAVVTSSGLPTGTNLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLG
                     ASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLI
                     GEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQII
                     SGFFFAFGALTYLISAQPNMNGLATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITI
                     IGLVLILVAASVTVFIK"
     gene            2325..2729
                     /gene="rbsD"
                     /locus_tag="PF788_000003"
     CDS             2325..2729
                     /gene="rbsD"
                     /locus_tag="PF788_000003"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDG6302299.1"
                     /translation="MKKSAILNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAV
                     TKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEM
                     KSNLAHPLNKGNIRTGETTPYSNIALESNVTF"
     gene            2757..3671
                     /gene="rbsK"
                     /locus_tag="PF788_000004"
     CDS             2757..3671
                     /gene="rbsK"
                     /locus_tag="PF788_000004"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDG6302300.1"
                     /translation="MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGA
                     NQAIATARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVN
                     AEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGV
                     TTVLNPAPAKALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKT
                     VLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAID
                     FGNKASSLTVQKHGAQASIPLLEEVNQV"
     gene            complement(3769..3903)
                     /locus_tag="PF788_000005"
     CDS             complement(3769..3903)
                     /locus_tag="PF788_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302301.1"
                     /translation="MIIIIINIAYLYAIIWKLKRLQKIVTSFITKHESTSIGLVENYF
                     "
     gene            3922..4683
                     /locus_tag="PF788_000006"
     CDS             3922..4683
                     /locus_tag="PF788_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDG6302302.1"
                     /translation="MSKEAGHTFLAKLGKTRLRPGGKEATDWLIQQGAFSQDKQVLEV
                     ACNMCTTSIYLAHTYGCHIQGVDINKKALEKAQENISAAGLESYIQVQQANAVKLPFD
                     DNQFDIVLNEAMLTMLPIAIKEKALREYYRVLKPGGILLTHDIVIVNESHATHVVKSL
                     SAAINVNVSPQTKLGWLDLYNQAGFNHVHYHTGPMSLMTPKGLIYDEGIVGTIKIINN
                     ALKKENRPMFCKMFKTMTKLRKDMNYITFVAKKEH"
     gene            complement(5117..6553)
                     /locus_tag="PF788_000007"
     CDS             complement(5117..6553)
                     /locus_tag="PF788_000007"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HDG6302303.1"
                     /translation="MTKLPQNFMWGGALAANQFEGGYDKGGKGLSVIDVMTSGAHGKA
                     RQITESIDPNHYYPNHEGIDFYHRYKEDIALFKEMGLKCLRTSIAWTRIFPNGDEDVP
                     NEEGLAFYDRIFDELIAQGIEPVVTLSHFEMPLHLAKHYGGFRNREVVDYFVHFARVV
                     FERYKDKVTYWMTFNEINNQMDTSNPIFLWTNSGVALTENDNPEEVLYQVAHHELLAS
                     ALAVRLGKEINPKFKIGTMISHVPIYPYSCHPKDMMEAQIANRLRFFFPDVQVRGYYP
                     SYAKKMLARKGYDVGWQEGDDSILQQGTVDYIGFSYYMSTAVKHDVDTTVENNIVNGG
                     LNHSVENPHIATSDWGWAIDPDGLRYTLNVLYDRYQLPLFIVENGFGAVDEVVDGHIH
                     DDYRIEYLKAHITAAIEAVDQDGVDLIGYTPWGIIDIVSFTTGEMKKRYGLIYVDRDN
                     DGHGTMERLKKDSFYWYQQVIASNGDKL"
     gene            complement(6569..7360)
                     /locus_tag="PF788_000008"
     CDS             complement(6569..7360)
                     /locus_tag="PF788_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDG6302304.1"
                     /translation="MSNKYKEQAQDILTAVGGVENIVDATYDTKCITIHMQHTIPSTA
                     NEVKQIVDVTSVAENDTQLVIKLNGNVDEVYQQLQRLIKNANVEESENTDNINSQDTS
                     YTPQVKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEESKVIAPFNGL
                     ISMIVPTKHAVGIQSEDGVDIVIHIGLNTVDLEGKGFKCFVKQNDHVEAGQTLLQFDQ
                     QYIQQQGYNADVIVVISNSADLGKVELTMNEIITTEDVIFKIFKN"
     gene            7509..8213
                     /locus_tag="PF788_000009"
     CDS             7509..8213
                     /locus_tag="PF788_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDG6302305.1"
                     /translation="MLKYEHIAKQLNAFIHQSNFKPGDKLPSVTQLKERYQVSKSTII
                     KALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEI
                     ATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIF
                     DYLESNMKLRIGFSDIFFNVDQLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSD
                     IVFHYRHAQFYIPSKK"
     gene            complement(8321..9022)
                     /gene="lrgB"
                     /locus_tag="PF788_000010"
     CDS             complement(8321..9022)
                     /gene="lrgB"
                     /locus_tag="PF788_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antiholin-like protein LrgB"
                     /protein_id="HDG6302306.1"
                     /translation="MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSM
                     VFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIG
                     IGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILN
                     GVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVG
                     VVVVAVVPVFVAIFF"
     gene            complement(9015..9458)
                     /gene="lrgA"
                     /locus_tag="PF788_000011"
     CDS             complement(9015..9458)
                     /gene="lrgA"
                     /locus_tag="PF788_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antiholin-like murein hydrolase modulator LrgA"
                     /protein_id="HDG6302307.1"
                     /translation="MVVKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASV
                     IGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIG
                     LIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD"
     gene            complement(9571..10311)
                     /locus_tag="PF788_000012"
     CDS             complement(9571..10311)
                     /locus_tag="PF788_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor LytR"
                     /protein_id="HDG6302308.1"
                     /translation="MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI
                     NQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKP
                     FGQKRIEQAVNKVRATKAKDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGI
                     GTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYT
                     YMVILTNGVKMQVGRSFMKDFKASIGLL"
     gene            complement(10314..12068)
                     /locus_tag="PF788_000013"
     CDS             complement(10314..12068)
                     /locus_tag="PF788_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014373763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDG6302309.1"
                     /translation="MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQL
                     CIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVG
                     LFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIV
                     MEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAV
                     QTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSD
                     HHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTL
                     KMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFF
                     FNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQ
                     ARYPGRFNININVEDKYRDVLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETAT
                     HVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFEST
                     SSGTTFWCVLPYERQEEE"
     gene            complement(12315..12989)
                     /gene="scdA"
                     /locus_tag="PF788_000014"
     CDS             complement(12315..12989)
                     /gene="scdA"
                     /locus_tag="PF788_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair di-iron protein ScdA"
                     /protein_id="HDG6302310.1"
                     /translation="MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEK
                     KNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQSAYHEPLREEFKNLTPYVT
                     KLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVI
                     DDLVSDHIATGELLVKMSELTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHV
                     LFKKVS"
     gene            complement(13129..14853)
                     /gene="tarS"
                     /locus_tag="PF788_000015"
     CDS             complement(13129..14853)
                     /gene="tarS"
                     /locus_tag="PF788_000015"
                     /EC_number="2.4.1.355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(ribitol-phosphate)
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDG6302311.1"
                     /translation="MMKFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCST
                     DQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETL
                     KDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRT
                     ALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVS
                     PEDFYEVMRLIAVEILNADLEEAHKNQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWI
                     NALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGK
                     LNIQFNEGEPYFKGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHS
                     RNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQ
                     RNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISLKLKGKNKII
                     LTGLDRGYVFEEGMASVVLKDDMVMGMLSQTSENEVQILLSKDIKKRDFKNIVKLNTA
                     HITYPLNK"
     gene            complement(14886..16574)
                     /locus_tag="PF788_000016"
     CDS             complement(14886..16574)
                     /locus_tag="PF788_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HDG6302312.1"
                     /translation="MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRT
                     MKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQN
                     LKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDV
                     VVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSD
                     SRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIF
                     VDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYV
                     SSETDIPFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVIL
                     FAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYF
                     VDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYE
                     SFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS"
     gene            complement(16596..17621)
                     /locus_tag="PF788_000017"
     CDS             complement(16596..17621)
                     /locus_tag="PF788_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDG6302313.1"
                     /translation="MINQVYQLVAPRQFEVTYNNVDIYSDYVIVRPLYMSICAADQRY
                     YTGSRDENVLSQKLPMSLIHEGVGEVVFDSKGVFNKGTKVVMVPNTPTEKDDVIAENY
                     LKSSYFRSSGHDGFMQDFVLLNHDRAVPLPDDIDLSIISYTELVTVSLHAIRRFEKKS
                     ISNKNTFGIWGDGNLGYITAILLRKLYPESKIYVFGKTDYKLSHFSFVDDVFFINKIP
                     EGLTFDHAFECVGGRGSQSAINQMIDYISPEGSIALLGVSEFPVEVNTRLVLEKGLTL
                     IGSSRSGSKDFQDVVDLYIQYPDIVDKLALLKGQEFEIATINDLTEAFEADLSTSWGK
                     TVLKWIM"
     gene            complement(17614..18330)
                     /locus_tag="PF788_000018"
     CDS             complement(17614..18330)
                     /locus_tag="PF788_000018"
                     /EC_number="2.7.7.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribitol-5-phosphate cytidylyltransferase"
                     /protein_id="HDG6302314.1"
                     /translation="MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILIN
                     DFEKIIIATPQQWMTHTKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGIN
                     DDDVIVTHDAVRPFLTHRIIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVR
                     NEMYQGQTPQSFNINLLKESYAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKV
                     TTPYDLKVANAIIRGGIADD"
     gene            complement(18606..19775)
                     /locus_tag="PF788_000019"
     CDS             complement(18606..19775)
                     /locus_tag="PF788_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol--glycerophosphate
                     glycerophosphotransferase"
                     /protein_id="HDG6302315.1"
                     /translation="MIKNTIKKLIEHSIYTTFKLLSKLPNKNLIYFESFHGKQYSDNP
                     KALYEYLTEHSDAQLIWGVKKGYEHIFQQHNVPYVTKFSMKWFLAMPRAKAWMINTRT
                     PDWLYKSPRTTYLQTWHGTPLKKIGLDISNVKMLGTNTQNYQDGFKKESQRWDYLVSP
                     NPYSTSIFQNAFHVSRDKILETGYPRNDKLSHKRNDTEYINGIKTRLNIPLDKKVIMY
                     APTWRDDEAIREGSYQFNVNFDIEALRQALDDDYVILLRMHYLVVTRIDEHDDFVKDV
                     SDYEDISDLYLISDALVTDYSSVMFDFGVLKRPQIFYAYDLDKYGDELRGFYMDYKKE
                     LPGPIVENQTALIDALKQIDETANEYIEARTVFYQKFCSLEDGQASQRICQTIFK"
     gene            complement(20203..21897)
                     /locus_tag="PF788_000020"
     CDS             complement(20203..21897)
                     /locus_tag="PF788_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000167965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HDG6302316.1"
                     /translation="MTKTKQAIHIDNIYWERVQLYIEGHSEGVDLTSGQFVLRNLTET
                     KTLEANEMKIDGNTFICRFNVAILDDGYYLPMDKYLFVYHDQLEYIGQLNPNIIDQAY
                     AALNEEQIEEYNELTTQNGKVNYLLAYDAKVFRKGGVSQHTVYTITPEIASDVNEFVF
                     DIEITLPQEKSGVIATSAHWLHKQGHKASFESRSFLFKAIFNITKLLHIKRSKTILFT
                     SDSRPNLSGNFKYVYDELLRQKVDFDYDIKTVFKENITDRRKWRDKFRLPYLLGKADY
                     IFVDDFHPLIYTVRFRPSQEIIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKA
                     YVSSETDIPFYAEAFGIREENVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKV
                     ILFAPTFRGNGHGTAHYPFFKIDFERLARYCEKHNAVVLFKMHPFVKNRLNISREHRQ
                     YFIDVSDHREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEP
                     FESFVPGKIVQSFDALMDALDNEDYEVEKVVPFLDKHFKYQDGRSSERLVKDLFRR"
     gene            complement(21919..22944)
                     /locus_tag="PF788_000021"
     CDS             complement(21919..22944)
                     /locus_tag="PF788_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDG6302317.1"
                     /translation="MINQVYQLVAPRQFDVTYNNVDIYGNHVIVRPLYLSICAADQRY
                     YTGRRDENVLRKKLPMSLVHEAVGEVVFDSKGVFEKGTKVVMVPNTPTEQHHIIAENY
                     LASSYFRSSGYDGFMQDYVVMAHDRIVPLPNDIDLSTISYTELVSVSYHAIQRFERKS
                     IPLKTSFGIWGDGNLGYITAILLRKLYPEAKTYVFGKTDYKLSHFSFVDDIFTVNQIP
                     DDLKIDHAFECVGGKGSQVALQQIVEHISPEGSIALLGVSELPVEVNTRLVLEKGLTL
                     IGSSRSGSKDFEQVVDLYRKYPDIVEKLALLKGHEINVCTMQDIVQAFEMDLSTSWGK
                     TVLKWTI"
     gene            complement(22937..23653)
                     /locus_tag="PF788_000022"
     CDS             complement(22937..23653)
                     /locus_tag="PF788_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDG6302318.1"
                     /translation="MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVS
                     EFNEIIIATPAQWISHTQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGIN
                     NDDVIVTHDAVRPFLTQRIIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVR
                     NEMYQGQTPQSFNIKLLQDSYRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKV
                     TTPYDLKVANAIIQGDIADD"
     gene            complement(24181..25224)
                     /locus_tag="PF788_000023"
     CDS             complement(24181..25224)
                     /locus_tag="PF788_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDG6302319.1"
                     /translation="MKALKLYGVEDLRYEDNEKPVIESANDVIIKVRATGICGSDTSR
                     YKKMGPYIKGMPFGHEFSGVVDAIGSDVTHVNVGDKVTGCPAIPCYQCEYCLKGEYAR
                     CEKLFVIGSYEPGSFAEYVKLPAQNVLKVPDNVDYIEAAMVEPSAVVAHGFYKSNIQP
                     GMTVAVMGCGSIGLLAIQWARIFGAAHIIAIDIDAHKLDIATSLGAHQTINSKEENLE
                     KFIENHYANQIDLAIESSGAKVTIGQILTLPKKGGEVVLLGIPYDDIEIDRVHFEKIL
                     RNELTVCGSWNCLSSNFPGKEWTATLHYMKTKDINVKPIISHFLPLEKGPETFDKLVN
                     KKERFDKVMFTIY"
     gene            complement(25248..25394)
                     /locus_tag="PF788_000024"
     CDS             complement(25248..25394)
                     /locus_tag="PF788_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302320.1"
                     /translation="MVESMLTFMLGPLRQITDFYMEHLLVSNSIVIAGYFATGIFKKK
                     KVVN"
     gene            complement(25396..26451)
                     /locus_tag="PF788_000025"
     CDS             complement(25396..26451)
                     /locus_tag="PF788_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HDG6302321.1"
                     /translation="MKALVKTREGHGNLELLDKEVATPLDDKVKIKVHYAGICGTDIH
                     TYEGHYKVNFPVTLGHEFSGEIVEVGADVKDFKVGDRVTSETTFYVCNECEYCKSKDY
                     NLCNHRKGIGTQVDGAFTNYVIAREESLHHIPDEVSYQSAAMTEPLACAYHGVSKIQV
                     NSGDVAVVMGPGPIGLLVAQVLKSKGATVVVTGLDNDKVRLDKAEALHMDYVVNLQQT
                     DLKTYINGITDGYGADVVVECSGAVPAARQGLDILRKKGFYSQIGIFKDAEIPFDMEK
                     VIQKEITVVGSRSQKPADWEPSLQLMADGLVNAEALVTKIYDISKWDEAYQHLKSGEG
                     IKVLLKPLDLDENEGEN"
     gene            complement(26469..27728)
                     /locus_tag="PF788_000026"
     CDS             complement(26469..27728)
                     /locus_tag="PF788_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HDG6302322.1"
                     /translation="MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLT
                     IGVAFVGIFLVIDLLVKNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFII
                     PLGIIVNVVLLVTKVTKTMNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQIICL
                     KVADWTAPMMSEFFDLPGVSIATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKR
                     FGAFGESIFVGLILGLGIGVLAGYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVS
                     ESARTWLNKRFGEREIYIGLDAAVALGHPAVISTALILVPITVLLAVILPGNQVLPFG
                     DLATIPFVVAFIVGAARGNIIHSVIVGTIMIAISLYIATDVAPIFTDMAKGTNVQMPK
                     GSSEISSIDQGGNIVNYLIFKLFSLFN"
     gene            complement(27955..28233)
                     /locus_tag="PF788_000027"
     CDS             complement(27955..28233)
                     /locus_tag="PF788_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDG6302323.1"
                     /translation="MKQVLVACGAGIATSTVVNNAIEEMAKEHNIKVDIKQIKITEVG
                     PYEDTADLLVTTAMTKKEYKFPVINARNFLTGIGIEETKQQILTELQK"
     gene            complement(28256..28723)
                     /locus_tag="PF788_000028"
     CDS             complement(28256..28723)
                     /locus_tag="PF788_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDG6302324.1"
                     /translation="MGQQLVHKENIMLNLSATDKESVLSQMSDVLFQNGFVKSTFKDA
                     VIDREKEFATGLPTHLCSVAIPHTDVEHINHRTIGVAVLEKEVPFIEMGTLDQQTEVK
                     IVFMLAMDKVDDQLKLLQQLMQIFQSEEKLEQILRTKDETILATLINDYLEYN"
     gene            complement(28708..30804)
                     /locus_tag="PF788_000029"
     CDS             complement(28708..30804)
                     /locus_tag="PF788_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HDG6302325.1"
                     /translation="MNGDNQQILREIVLNPTIHGKELESIFGLSRRQLGYRIQKINLW
                     LEQEGYPKLERTSQGNFIVSSEIMTLFKRDVSEQQMLNGNNVIFSIETRRYYLMLMLF
                     SKENAMSLNHFSIDLQVSKNTVIHDINHVKEQLENHGLSLKYSRKHGYEIVGDEFEVR
                     RFFIKLIDQRLNHDITKSEVLKALNLTFEDIAYQKDKIKQVEQFLKSRFIDKSLSSLP
                     YVLCVIRRRIQSGHVMNPLNINYQYLRDTKEYQATEIMTQHEPDLPEAEKLYLTLHLL
                     STSVQWTDLQESDSISNLTMAIAQMIHHFEQITFINIEDKEKLSQQLLLHLTPAFYRI
                     KYNLTDRDELINPLQGNYQSLFHMVKQSCQSLTEYFGKSLPDNEIAYLTMLFGGSLRR
                     QDENFDGKIKAIIVCTQGTSVSQMMLYELRNLFPEIIFLDAISLRTFENYTLDYDIVF
                     SPMFVLTHKKLFITKVALSENEQRKLRKEVMKYINKESADIDKEINKLMALIERTTTV
                     NDITELRDGLEDFIANYNSISTINGSIVTQNKTLDLADLIPARHVKRMHHVENIDEAI
                     AKASDVLVANHFIDIKYIHEMQQVFDDSYMVIMQNIAIPHAYSEKHVHKTAMSMLILQ
                     EPIYMSDGTAIHIIVPIAAVDKVTHLRALLQLRDVAQDNDAIKRIIQSRKNSDVNEIL
                     KNYSNKEARENGWDSN"
     gene            complement(30935..31033)
                     /locus_tag="PF788_000030"
     CDS             complement(30935..31033)
                     /locus_tag="PF788_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302326.1"
                     /translation="MYVKNASKKHKTQKYMQKFQLLYFKRLKSQKI"
     gene            complement(31143..32078)
                     /locus_tag="PF788_000031"
     CDS             complement(31143..32078)
                     /locus_tag="PF788_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDG6302327.1"
                     /translation="MKRKIIMDCDPGHDDAIALILAGAIDSPLEILAVTTVAGNQSVD
                     KNTTNALNVLDIMGRQDIAVAKGADRPLIKPAAFASEIHGESGLDGPKLPSTPSRQAV
                     AMPASDVIINKVMTSDTPVTIVATGPLTNVATALIREPRIAEHIESITLMGGGTFGNW
                     TPTAEFNIWVDAEAAKRVFESGITINVFGLDVTHQVLADDHVIERFESINNPVAQFVV
                     ELLQFFKKTYKTHFNMDGGPIHDACTILYLLQPELFTMVPVNIDIEHQSPLTYGTMAV
                     DLNHVTGKPANAYFATAVDVEEVWNLIDHKLRTYE"
     gene            32440..33969
                     /locus_tag="PF788_000032"
     CDS             32440..33969
                     /locus_tag="PF788_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDG6302328.1"
                     /translation="MKSLFEKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKAY
                     PILDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIGLSRSDKGTAGLAALLGFLIMN
                     ATMNGLLTITGTLAKDQLAQNGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVVL
                     PPYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTGAIGTFVYG
                     FILRLLGPLGLHHIFYLPFWQTALGGTLEVKGHLVQGTQNIFFAQLGDPDVTKYYSGV
                     SRFMSGRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAALTSFLTGITEPLEFSF
                     LFVAPILYVIHAFFDGLAFMMADIFNITIGQTFSGGFIDFLLFGVLQGNSKTNYLYVI
                     PIGIVWFCLYYIVFRFLITKFNFKTPGREDKAAAQQVEATERAQTIVAGLGGKDNIEI
                     VDCCATRLRVTLHQNDKVDKVLLESTGAKGVIQQGTGVQVIYGPHVTVIKNEIEELLG
                     D"
     gene            complement(34289..35242)
                     /locus_tag="PF788_000033"
     CDS             complement(34289..35242)
                     /locus_tag="PF788_000033"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017804598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HDG6302329.1"
                     /translation="MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKV
                     RGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKI
                     FKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLL
                     SEAFDVAPRSVDAQIIGEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQT
                     RDAAYDIIQAKGATYYGVAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPA
                     VINRNGIRNVVEIPLNDEEQSKFAHSAKTLKDIMAEAEELK"
     gene            complement(35553..35660)
                     /locus_tag="PF788_000034"
     CDS             complement(35553..35660)
                     /locus_tag="PF788_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302330.1"
                     /translation="MSVCTPTIERIYLTNSKNIVVFLEKSKHDNKNVKV"
     gene            35815..36960
                     /locus_tag="PF788_000035"
     CDS             35815..36960
                     /locus_tag="PF788_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide dioxygenase"
                     /protein_id="HDG6302331.1"
                     /translation="MLTEQEKDIIKQTVPLLKEKGTEITSIFYPKMFKAHPELLNMFN
                     QTNQKRGMQSSALAQAVMAAAVNIDNLSVIKPVIMPVAYKHCALQVYAEHYPIVGKNL
                     LKAIQDVTGLEENDPVIQAWAKAYGVIADVFIQIEKEIYDQMMWIGFKPFKITNIKQE
                     SEDIKSFTVETEEYDFSEFTPGQYITVDVSSDKLPYRAKRHYSIVSGEKNHLTFGVKR
                     DVTTEHEGEVSTILHDEIKEGDMINLAAPVGGFVLENTTEPQLFLGSGIGVTPLVAMY
                     EAASAKGLDTQMVQVAENEQHLPFKDNFNSIASHHDNAKLYTHLKDKQGYIGAEELQV
                     FLANKPEIYICGGTKFLQSMIEALKSLNYDMDRVHYETFIPRLSVAV"
     gene            36986..37159
                     /locus_tag="PF788_000036"
     CDS             36986..37159
                     /locus_tag="PF788_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302332.1"
                     /translation="MKLNQRYVKVFALYFVSIVTANIIVKNNNLIKTLIQTIAGYTVF
                     AVGLKYLTKRKNK"
     gene            37316..37672
                     /locus_tag="PF788_000037"
     CDS             37316..37672
                     /locus_tag="PF788_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HDG6302333.1"
                     /translation="MTVDIGRIYDNKDNTDAIRILVDRVWPRGISKRTANLDYWLKDI
                     APSTELRQWFQHDPKLFGAFKEKYEKELRDQDAQKDAFEKLKDIVNQHNHVLLLYAAK
                     DTKHNQAVVLQQLLNT"
     gene            37870..39345
                     /locus_tag="PF788_000038"
     CDS             37870..39345
                     /locus_tag="PF788_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDG6302334.1"
                     /translation="MKFKRLATIFSAVLVLSGCGSMHSSGKDLNISLPLKTKSIAPYE
                     TDVPVKIGAAESLFKTNDQGKIEKALVKSYHQPNDTTLDIELKDNIKFQNGQKLTAEK
                     VKSSLENSMKKSDLVKYSLPISSITAKGQKLTIKTNSAYPELVSELANPFMAIYDTDA
                     KSDVNQTPVGTGPYQIKDYKQSRKISLSNFKDYWQGKPKLDHITVTYQEDGNNRVRNL
                     ESQKDDLITDVPVNKVQDIENNQNLKVSKESGFRTSLLMYNHTNKKMTKSVREALDHI
                     IDRQGIADHIYQGYAKPATSPFNDKIPYIKEPKLTKQNIEQAKMLLAKDGYTKEHPLK
                     IKLITYDGRPELSKIAQVLQSDAKKANIEIDIKSVDDIEGYLKDRSAWDATMYSFGTI
                     PRGDTGYFFNQAYKKDGAINKGDYNNSNVDDLINQLNHTVDVKERHNISNDIIKLSSR
                     DVPNSYIAYNDQIVAANSKVKNYKVTPEGIYLIDYRTTIER"
     gene            complement(39659..40801)
                     /locus_tag="PF788_000039"
     CDS             complement(39659..40801)
                     /locus_tag="PF788_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HDG6302335.1"
                     /translation="MSSASTQSTKTSDIHNESIDKQMEAKAHETAQNTDLKNEARSLF
                     DNATKSIGRLAGNDESLNLNLKDMLSEVFKPHTKNEADEIFIAGTAKTTPAICDISEE
                     WGKPWLFSRVFIAFTVTFIGLWVMAAIFNNTNAIPGLIFIGALTVPLSGLFFFYESNA
                     FKNISIFEVIIMFFIGGVFSLLSTMVLYRFVVFSDQFERFGSLTFFDAFLVGLVEETG
                     KALIIVYFVNKLKTNKILNGLLIGAAIGAGFAVFESAGYILNFALGENVPLLDIVFTR
                     AWTAIGGHLVWSAIVGAAIVIAKEQHGFEFKDIFDKRFLIFFLSAVVLHGIWDTSLTV
                     LGSDTLKIFILIVIVWILVFILMGAGLKQVNLLQKEFKEQQKKVDE"
     gene            41242..42819
                     /locus_tag="PF788_000040"
     CDS             41242..42819
                     /locus_tag="PF788_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HDG6302336.1"
                     /translation="MEVTCLKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLA
                     QHDTYHTPNDLTFILANDIHSLGAAPDLDDFIERRMIKRVIMSILTASSKTAQAMKNN
                     DIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVT
                     INDETYLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQ
                     VKALVDDYQLKPNEVVIPGNLVDYVYVTEDEKNHRQVIQSHYLPALSGEERIDGIPEP
                     ALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVEHDVQPILDVGIFGG
                     FVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLN
                     GCGGFIDITQSVNKIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQY
                     SQSLEQEIYFVTDRAVFELTNQGLKLIEIAPGLDLHKDILNQMAFKPIIADHLKLIDT
                     SIYKEKWGQLKQSIHKV"
     gene            42845..44350
                     /locus_tag="PF788_000041"
     CDS             42845..44350
                     /locus_tag="PF788_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl--CoA ligase"
                     /protein_id="HDG6302337.1"
                     /translation="MNFDWIKTRSDFDDDKPAVIDHAKQTSWTYQQLNARADNMAHYL
                     TSQGVKKGDVIGIFAPNDIAILDLLFACFKTGAVFLPLNWRLNPKEIAAIVEDAQLKL
                     LFYAEKHLSSLTDIDQNLLHMDIDVAQYDEIVNPDYHQPFQATPVEPQDLAALIYTSG
                     TTGSPKGVMFSYESFVHNGANLELTYKFNSNYITIVSTPMFHVLGFNDTVLPVLMSGG
                     TLILQRYFNGEELNDMIAQYHPTFIIMIPTMYYSTLRASNFNPENFRAMDYIIQGGSQ
                     PLPSIQAAFKQYGINIINGYGLTEAPLVLVNTPENSKRKPMSIGKAVMFVDARILDDN
                     GEEVPTGEIGELAIKAKNVTPGYWNKPAETAKAFHGRYLLTGDLAKMDNDGDIFIIDR
                     KKELIITGGENVLPSEVENALAEHPLVDRCVVVGYDHPKYGESIAAAIILREDEPHYA
                     EILNQHMRSRLAGYKVPRMYVPVTHMPLNSTQKPDKLAIRQMMNDKVSQTL"
     gene            44462..45673
                     /locus_tag="PF788_000042"
     CDS             44462..45673
                     /locus_tag="PF788_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HDG6302338.1"
                     /translation="MTFEKETVLKTLFPEDVLSIAKGLTDGEVEFLQQVDSLLESKYR
                     ENINQHWIDATVPEDYFKDLGELNYFNNPLLYKDRPNAKMPSQLFQFFMSYLLARFDI
                     SLATLLGVHQGLGHNTFYFGGSKEQIAKYVPKLQSHELRTCFALTEPEHGSDVAGGLE
                     TVAERQGDTWVINGEKKWIGGAHVSDVIPVFAVNKETGKPHCFVVRPEQDGVDIEVID
                     NKIALRIVPNALIKLTNVKVDEADRLQNITSFKDIAKILYSTRAGVAYMATGGMAGAL
                     RATLDYVTERKQFGKPISKYQLIQEKLAMMQGNLAQAMATCAQLANMQAHGEYDEVAT
                     STAKMMNALRLRETVAMGRGITGGNGILADDYDIARFFSDAEAIYTYEGTHEINALVI
                     GRALTGDSAFV"
     gene            45859..48120
                     /locus_tag="PF788_000043"
     CDS             45859..48120
                     /locus_tag="PF788_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA
                     hydratase family protein"
                     /protein_id="HDG6302339.1"
                     /translation="MTINKVTVLGAGTMGAQLAALFVNAGLKVKLLDIVVDKNDPNLI
                     AKKSYDKITDKKRPLLFDLNLASHLTYGNFDDDLVNDDADLYIEAVKEDIEIKHAVWQ
                     QVLQHAKEDALFATNTSGIPINAIAQAFNEKDQERFFGLHFFNPPRIMKLVELIPTSH
                     TKESIILDVKNFAQNVLGKGVIVVNDVPGFVANRVGTQTMNDIMYRAEQHKISIVDVD
                     ALTGQAIGRPKTGTYALSDLVGLDIAVSVIKGMQQVPEETPYFHDVKIVNTLFDNGAL
                     GRKTKQGFYKKDKETKARLVYDVEKQDYVPVSQPQLPILNEFNKDLVHNLDTIFNAQD
                     EAGLFLWETLRNNFYYSAINVPKATDDFRDIDRALVWGFNWKLGPFQLWDAMGYERVK
                     TRMEDELGDLPQWISDLDGGFYKQDETIEYATPISHFVKDELWDKGDAKLSVTHDDQL
                     LLKLQSKNNVITDEFNDALVDAIDLLENDHYTSMVIYADGNNFSVGANLFLMKKAHED
                     GLVDDVVAQSIDKLHYSFNRLKYSLKPVVTAVQGRALGGGCELVLYSPIVVAASETYI
                     GLVEAGVGLLPSGGGLAEMADRILRTSHKFDDKQASMTKVLTNIAFAKVSTNAFEARR
                     YGYLRDTDTIIFNTAQRVEVALKRAKYEAETNYIPNPRHQYIALGEDFKALIQGQLDA
                     QRRGHFISDHDYHIALNIATILAGGDLPRNTFINQRYIQSLEKIGFIDLLKSKKSYER
                     IAHMLKTGKPLRN"
     gene            48150..49334
                     /locus_tag="PF788_000044"
     CDS             48150..49334
                     /locus_tag="PF788_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HDG6302340.1"
                     /translation="MQEAYIVAYGRSAAAKAKQGALFHERPDDVAAKVLQGVLKRIDG
                     KFNKNMIEDVIVGTAFPEGLQGQNIARTIALRAGLSDTVPGQTVNRYCSSGLQTIAIA
                     ANQIMAGQGDILVAGGVELMSAVPMGGNEPTNNPTLQYDDIGASYPMGLTAENVASQF
                     DVSREDQDAYAVRSHQRAYDAQRDGRFKDEIIPIQVNSVEYTNAGPKVHTNIFDQDEF
                     IRPDTTMEALAKLRTVFKADGTVTAGTSAPLSDGAGFVVLMSGDKVKELGVTPIARFV
                     GFKAVGVDPKIMGIGPAYAIPEVLSLSNLSVEDIDLIELNEAFASQTIASIKEVGLDI
                     SRTNVNGGAIALGHPLGATGAMLTARLLNEMGRRPDSRYGMVTMCIGVGMGAAAIFEY
                     VR"
     gene            49648..49755
                     /locus_tag="PF788_000045"
     CDS             49648..49755
                     /locus_tag="PF788_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302341.1"
                     /translation="MCVRTRLVSSSSARLSKAIIIAVIVVYHLDVRGLF"
     gene            complement(49937..51766)
                     /gene="coa"
                     /locus_tag="PF788_000046"
     CDS             complement(49937..51766)
                     /gene="coa"
                     /locus_tag="PF788_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylocoagulase"
                     /protein_id="HDG6302342.1"
                     /translation="MKKQIISLGALAVASSLFTWDNKADAIVTKDYSGKSQVNAGSKN
                     GTLIDSRYLNSALYYLEDYIIYAIGLTNKYEYGDNIYKEAKDRLLEKVLREDQYLLER
                     KKSQYEDYKQWYANYKKENPRTDLKMANFHKYNLEELSMKEYNELQDALKRALDDFHR
                     EVKDIKDKNSDLKTFNAAEEDKATKEVYDLVSEIDTLVVSYYGDKDYGEHAKELRAKL
                     DLILGDTDNPHKITNERIKKEMIDDLNSIIDDFFMETKQNRPKSITKYNPTTHNYKTN
                     SDNKPNFDKLVEETKKAVKEADDSWKKKTVKKYGETETKSPVVKEEKKVEEPQAPKVD
                     NQQEVKTTAGKAEETTQPVAQPLVKIPQGTITGEIVKGPEYPTMENKTVQGEIVQGPD
                     FLTMEQSGPSLSNNYTNPPLTNPILEGLEGSSSKLEIKPQGTESTLKGTQGESSDIEV
                     KPQATETTEASQYGPRPQFNKTPKYVKYRDAGTGIREYNDGTFGYEARPRFNKPSETN
                     AYNVTTHANGQVSYGARPTQNKPSKTNAYNVTTHGNGQVSYGARPTQNKPSKTNAYNV
                     TTHANGQVSYGARPTYKKPSKTNAYNVTTHADGTATYGPRVTK"
     gene            51956..52300
                     /locus_tag="PF788_000047"
     CDS             51956..52300
                     /locus_tag="PF788_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complement inhibitor SCIN family protein"
                     /protein_id="HDG6302343.1"
                     /translation="MTTQMKIKTYLVAGIKAALLDTTGIKLASKSETTSHTYQHQALV
                     DQLHELIANTDLNKLSYLNLDAFQKRDILAAHYIAKSAIRTKNLDQMTKAKQRLESIY
                     NSISNPLHSQNN"
     gene            complement(52464..54227)
                     /locus_tag="PF788_000048"
     CDS             complement(52464..54227)
                     /locus_tag="PF788_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphoryl diester phosphodiesterase
                     membrane domain-containing protein"
                     /protein_id="HDG6302344.1"
                     /translation="MKRISKDIWAVFKLLYQNKGRFSINALLLQLIMIFISSTYLILL
                     FNMMLKVAGQSQLTINNWTEIVSHPASVILLIIFILSVAFLIYVEFSLLVYMVYAGFD
                     RQIITFKSIFKNAFVNVRKLIGVPVIFFVIYLMLMIPIANLGLSSVLTKNIYIPKFLT
                     EELMKTTKGIIIYGTFMIAVFILNFKLIFTLPLTILNRQSLFKNMRLSWQITKRNKFR
                     LVIEIVILELIIGAILTLIISGATYLAICVDEEGDKFLVSSILFVVLKSALFFYYLFT
                     KLSLISVLVLHLKQENVLDQPGLEFKYPKPKRKSRFFIISMVLAVTCFIGYNMYLLYN
                     NTINTNISIIGHRGFEDKGVENSIPSLKAAAKANVEYVELDTIMTKDKQFVVSHDNNL
                     KRLTGVNKNISESNFKDIVGLKMRQNGHEAKFVSLDEFIETAKQSNVKLLVELKPHGK
                     EPADYTQRVIDILKKHGVEHQYRVMSLDYDVMTKLKKEAPYLKCGYIIPLQFGHFKET
                     SLDFFVIEDFSYSPRLVNQAHLENKEVYTWTINGEEDLTKYLQTNVDGIITDDPALAD
                     QIKEEKKDETYFDRSIRILFE"
     gene            complement(54563..55318)
                     /gene="pflA"
                     /locus_tag="PF788_000049"
     CDS             complement(54563..55318)
                     /gene="pflA"
                     /locus_tag="PF788_000049"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HDG6302345.1"
                     /translation="MLKGHLHSVESLGTVDGPGLRYILFTQGCLLRCLYCHNPDTWKI
                     SEPSREVTVDEMVNEILPYKPYFDASGGGVTVSGGEPLLQMPFLEKLFAELKENGVHT
                     CLDTSAGCANDTKAFQRHFEELQKHTDLILLDIKHIDNDKHIRLTGKPNTHILNFARK
                     LSDMKQPVWIRHVLVPGYSDDKDDLIKLGEFINSLDNVEKFEILPYHQLGVHKWKTLG
                     IAYELEDVEAPDDEAVKAAYRYVNFKGKIPVEL"
     gene            complement(55341..57590)
                     /gene="pflB"
                     /locus_tag="PF788_000050"
     CDS             complement(55341..57590)
                     /gene="pflB"
                     /locus_tag="PF788_000050"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDG6302346.1"
                     /translation="MLETNKNHATAWQGFKNGRWNRHVDVREFIQLNYTLYEGNDSFL
                     AGPTEATSKLWEQVMQLSKEERERGGMWDMDTKVASTITSHDAGYLDKDLETIVGVQT
                     EKPFKRSMQPFGGIRMAKAACEAYGYELDEETEKIFTDYRKTHNQGVFDAYSREMLNC
                     RKAGVITGLPDAYGRGRIIGDYRRVALYGVDFLMEEKMHDFNTMSTEMSEDVIRLREE
                     LSEQYRALKELKELGQKYGFDLSRPAENFKEAVQWLYLAYLAAIKEQNGAAMSLGRTS
                     TFLDIYAERDLKAGVITESEVQEIIDHFIMKLRIVKFARTPDYNELFSGDPTWVTESI
                     GGVGIDGRPLVTKNSFRFLHSLDNLGPAPEPNLTVLWSVRLPDNFKTYCAKMSIKTSS
                     IQYENDDIMRESYGDDYGIACCVSAMTIGKQMQFFGARANLAKTLLYAINGGKDEKSG
                     AQVGPNFEGINSEVLEYDEVFKKFDQMMDWLAGVYINSLNVIHYMHDKYSYERIEMAL
                     HDTEIVRTMATGIAGLSVAADSLSAIKYAQVKPIRNEEGLVVDFEIEGDFPKYGNNDD
                     RVDDIAVDLVERFMTKLRSHKTYRDSEHTMSVLTITSNVVYGKKTGNTPDGRKAGEPF
                     APGANPMHGRDQKGALSSLSSVAKIPYDCCKDGISNTFSIVPKSLGKEPEDQNRNLTS
                     MLDGYAMQCGHHLNINVFNRETLIDAMEHPEEYPQLTIRVSGYAVNFIKLTREQQLDV
                     ISRTFHESM"
     gene            58178..59146
                     /locus_tag="PF788_000051"
     CDS             58178..59146
                     /locus_tag="PF788_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDG6302347.1"
                     /translation="MKSKIYILLLFLIFLSACANTRHSESDKNVLTVYSPYQSNLIRP
                     ILNEFEKQEHVKIEIKHGSTQVLLSNLHNEDFSERGDVFMGGVLSETIDHPEDFVPYQ
                     DTSVTQQLEDYRSNNKYVTSFLLMPTVIVVNSDLQGDIKIRGYQDLLQPILKGKIAYS
                     NPNTTTTGYQHMRAIYSMHHRVSDVHQFQNHAMQLSKTSKVIEDVAKGKYYAGLSYEQ
                     DARTWKNKGYPVSIVYPIEGTMLNVDGIALVKNAHPHPKRKKLVQYLTSRSVQQRLVA
                     EFDAKSIRKDVSEQSDQSIENLKNIPLIPKSKLPDIPHHKFLEMIQ"
     gene            59143..60699
                     /locus_tag="PF788_000052"
     CDS             59143..60699
                     /locus_tag="PF788_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDG6302348.1"
                     /translation="MTAYKPYRHQLRRSLFASTIFPVFLVIIIGLVSFYAIYIWIEHR
                     TIHQHVDESQSSLHHTEKQIQTFITQHNNSFQELDLTNHHDVTATKRELLKLIHQQPA
                     TLYYELSGPNQFITNNYEHLNTKNMYLFSTHQLKFKNSTYMLKIYMANTPRLSEIKKD
                     NRQFALIVDQYDNILYANDDRFTIGEKYRPQQFGFMNESVKLNHADHRLIIYKDIHEN
                     IEDGITLLIVMAVVLVLLVIFGFISADNMAKRQTKDIETIIQKIYYAKNRHLGTYTPL
                     KNNSELEEINNYIYDLFESNEQLIHSIEHTERRLRDIQLKEIERQFQPHFLFNTMQTI
                     QYLITLSPKLAQTVVQQLSQMLRYSLRTNSHTVELNEELNYIEQYVAIQNIRFDDMIK
                     LHIESSEEARHQTIGKMMLQPLIENAIKHGRDTESLDITIRLTLARQNLHVLVCDNGI
                     GMSSSRLQYVRQSLNNDVFDTKHLGLNHLHNKAMIQYGSHARLHIFSKRNQGTLICYK
                     IPLSRGNVDV"
     gene            60692..61450
                     /locus_tag="PF788_000053"
     CDS             60692..61450
                     /locus_tag="PF788_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6302349.1"
                     /translation="MFKVVICDDERIIREGLKQIIPWGDYHFNTIYTAKDGVEALSLI
                     QQHQPELVITDIRMPRKNGVDLLNDIAHLDCNVIILSSYDDFEYMKAGIQHHVLDYLL
                     KPVDHAQLEVILGRLVRTLLEQQSQNGRSLASCHDAFQPLLKVEYDDYYVNQIVDQIK
                     QSYQTKVTVSDLIQHIDVSESYAMRTFKDHVGITIVDYLNRYRILQSLQLLDRHYKHY
                     EIADKVGFSEYKMFSYHFKKYLQMSPSDYCKQAK"
     gene            complement(61809..63188)
                     /gene="uhpT"
                     /locus_tag="PF788_000054"
     CDS             complement(61809..63188)
                     /gene="uhpT"
                     /locus_tag="PF788_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HDG6302350.1"
                     /translation="MNFFDIHKIPNKGIPLSVQRKLWLRNFMQAFFVVFFVYMAMYLI
                     RNNFKAAQPFLKEEIGLSTLELGYIGLAFSITYGLGKTLLGYFVDGRNTKRIISFLLI
                     LSAITVLIMGFVLSYFGSVMGLLIVLWGLNGVFQSVGGPASYSTISRWAPRTKRGRYL
                     GFWNTSHNIGGAIAGGVALWGANVFFHGNVIGMFIFPSVIALLIGIATLFIGKDDPEE
                     LGWNRAEEIWEEPVDKENIDSQGMTKWEIFKKYILGNPVIWILCVSNVFVYIVRIGID
                     NWAPLYVSEHLHFSKGDAVNTIFYFEIGALVASLLWGYVSDLLKGRRAIVAIGCMFMI
                     TFVVLFYTNATSVMMVNISLFALGALIFGPQLLIGVSLTGFVPKNAISVANGMTGSFA
                     YLFGDSMAKVGLAAIADPTRNGLNIFGYTLSGWTDVFIVFYVALFLGMILLGIVAFYE
                     EKKIRSLKI"
     gene            63421..63915
                     /locus_tag="PF788_000055"
     CDS             63421..63915
                     /locus_tag="PF788_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002454321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxyl methyltransferase
                     family protein"
                     /protein_id="HDG6302351.1"
                     /translation="MILSILLIFFCIRLVSLKISINHSKQLKADGAVEYGVKNSKFLA
                     ITHVLIYVLAGVEAFINKDTFSFANGIGLVILIFAYIMLFMVIKTLGGIWTLKLFILP
                     NHPIIKSGLYKITKHPNYFLNIIPELIGVLLLTHATYTTILLVPYAYFLYVRIKQEEK
                     LMNI"
     gene            complement(64277..65245)
                     /locus_tag="PF788_000056"
     CDS             complement(64277..65245)
                     /locus_tag="PF788_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HDG6302352.1"
                     /translation="MKIGVFSVLFYDKNFEDMLDYVSESGLDMIEVGTGGNPGDKFCK
                     LDELLENEDKRQAFMKSITDRGLQISGFSCHNNPISPDPIEAKEADETLRKTIRLANL
                     LDVPVVNTFSGIAGSDDTAKKPNWPVTPWPTAYSEIYDYQWNEKLIPYWQDLAEFAKE
                     QDVKIAIELHAGFLVHTPYTMLKLREATNEYIGANLDPSHLWWQGIDPIAAIRILGQA
                     NAIHHFHAKDTYINQENVNMYGLTDMQPYGNVATRAWTFRTVGYGHSPYVWADIISQL
                     IINGYDYVLSIEHEDPIMSVEEGFQKACQTLKSVNIYDKPADMWWA"
     gene            complement(65300..66340)
                     /locus_tag="PF788_000057"
     CDS             complement(65300..66340)
                     /locus_tag="PF788_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDG6302353.1"
                     /translation="MTKLKVGVIGVGGIAQDRHIPALLKLKDTVSLVAVQDINTVQMI
                     DVAKRFNIPHAVETPSELFKLVDAVVICTPNKFHADLSIEALNHGVHVLCEKPMAMTT
                     EECDRMIEAANKNHKLLTVAYHYRHTDVAITAKKAIESGVVGKPLVARVQAMRRRKVP
                     GWGVFTNKALQGGGSLIDYGCHLLDLSLWLLGKDMVPHEVLGKTYNQLSKQPNQINDW
                     GTFDHTKFDVDDHVTSYMTFANRASMQFECSWSANIKEDKVHVSLSGEDGGINLFPFE
                     IYEPRFGTIFESKANVEHNEDIAGERQARNFVNACLGIEEIVVKPEEARNVNALIEAI
                     YRSDLDNKSIQL"
     gene            complement(66365..67441)
                     /locus_tag="PF788_000058"
     CDS             complement(66365..67441)
                     /locus_tag="PF788_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDG6302354.1"
                     /translation="MTIKVGIIGCGGIANGKHMPSLQKVENVEMIAFCDVDISKAASA
                     AEAYGTDNAKVYDDYKALLKDDTIDVIHVCTPNDSHCEITVAGLHAGKHVMCEKPMAK
                     TTAEAQKMIDTAKSTGKKLTIGYQNRFRADSQFLHQAAQRGDLGDIYFGKAHAIRRRA
                     VPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNYEPESVMGSTFHKLNKQHHAANA
                     WGSWNPDEFTVEDSAFGFIKMKNGATIILESAWAINSLEVDEAKCSLSGTKAGADMKD
                     GLRIHGEDMGTLYTKHVELENKGVDFYEGNEVDEAEEEAKAWIDAVVNDTEPVVKPEQ
                     AMVVTKILEAIYQSAKSGKAIYFE"
     gene            complement(67515..68354)
                     /locus_tag="PF788_000059"
     CDS             complement(67515..68354)
                     /locus_tag="PF788_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDG6302355.1"
                     /translation="MTKKKNILKAIGIYSFIAMMFVIILYPLLWTFGISLNPGTNLYG
                     AKMIPDNATFKNYAFLLFDDSSQYLTWYKNTLIVASANALFSVIFVTLTAYAFSRYRF
                     VGRKYGLITFLILQMFPVLMAMVAIYILLNTIGLLDSLFGLTLVYIGGSIPMNAFLVK
                     GYFDTIPKELDESAKIDGAGHMRIFLQIMLPLAKPILAVVALFNFMGPFMDFILPKIL
                     LRSPEKFTLAVGLFNFINDKYANNFTVFAAGAIMIAVPIAIVFLFLQRYLVSGLTTGA
                     TKG"
     gene            complement(68356..69624)
                     /locus_tag="PF788_000060"
     CDS             complement(68356..69624)
                     /locus_tag="PF788_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDG6302356.1"
                     /translation="MTKRNPKLAALLSVIPGLGQFYNKRPIKGTIFFIFFISFISVFY
                     SFLNIGFWGLFTLGTVPKLDDSRVLLAQGIISILLVAFAIMLYIINILDAYRNAERFN
                     RNEEIKDPKARMVATWDKTFPYLLISPGTFLLIFVVVFPLIFMFGVAFTNYNLYNAPP
                     RHTLEWVGLDNFKTLFTIGVWRKTFFSVITWTLVWTLVATTLQIALGLFLAIIVNHPV
                     VKGKKFIRTVLILPWAVPSFVTILIFVALFNDEFGAINNDILQPLLGVAPAWLSDPFW
                     AKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYA
                     TAPLLIMQYAGNFNNFNLIYLFNKGGPPVSGQNAGSTDILISWVYNLTFEFNNFNMGA
                     VVSLIIGFIVAIVAFIQFRRTSTFKDEGGL"
     gene            complement(69627..70898)
                     /locus_tag="PF788_000061"
     CDS             complement(69627..70898)
                     /locus_tag="PF788_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDG6302357.1"
                     /translation="MSKILKCITLAVVMLLIVTACGPNRSKEDIDKALNKDNSKDKPN
                     QLTMWVDGDKQMAFYKKITDQYTKKTGIKVKLVNIGQNDQLENISLDAPAGKGPDIFF
                     LAHDNTGSAYLQGLAAEIKLSKDELKGFNKQALKAMNYDNKQLALPAIVETTALFYNK
                     KLVKNAPQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSE
                     YDIHQLGLNSKHVVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNIN
                     EYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLSEYSKHKYWAKDLMLYITSKDTLQ
                     KYTDEMSEITGRVDVKSSNPNLKVFEKQARHAEPMPNIPEMRQVWEPMGNASIFISNG
                     KNPKQALDEATNDITQNIKILHPSQNDKKGD"
     gene            complement(70911..72008)
                     /gene="ugpC"
                     /locus_tag="PF788_000062"
     CDS             complement(70911..72008)
                     /gene="ugpC"
                     /locus_tag="PF788_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HDG6302358.1"
                     /translation="MAELKLEHIKKTYDNNNTVVKDFNLHITDKEFIVFVGPSGCGKS
                     TTLRMVAGLESITSGDFYIDGERMNDVEPKNRDIAMVFQNYALYPHMTVFENMAFGLK
                     LRKVNKKEIEQKVNEAAEILGLTEYLGRKPKALSGGQRQRVALGRAIVRDAKVFLMDE
                     PLSNLDAKLRVQMRTEILKLHKRLNTTTIYVTHDQTEALTMASRIVVLKDGDIMQVGT
                     PREIYDAPNCIFVAQFIGSPAMNMLNATVEMDGLKVGTHHFKLHNKKFEKLKAAGYLD
                     KEIILGIRAEDIHEEPIFIQTSPETQFESEVVVSELLGSEIMVHSTFQGMELISKLDS
                     RTQVMANDKITLAFDMNKCHFFDEKTGNRIV"
     gene            complement(72391..72969)
                     /locus_tag="PF788_000063"
     CDS             complement(72391..72969)
                     /locus_tag="PF788_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDG6302359.1"
                     /translation="MTKRPKRILATIIIFLSLLFTIIYIDDIQKWFNQYTDKLTQNHK
                     GQGHSKWEDFFRGSRITETFGKYQHSPFDGKHYGIDFALPKGTPIKAPTNGKVTRIFN
                     NELGGKVLQIAEDNGEYHQWYLHLDKYNVKVGDRVKAGDIIAYSGNTGIQTTGAHLHF
                     QRMKGGVGNAYAEDPKPFIDQLPDGERSLYDL"
     gene            73178..73804
                     /locus_tag="PF788_000064"
     CDS             73178..73804
                     /locus_tag="PF788_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HDG6302360.1"
                     /translation="MAKVLYITAHPFNELVSNSMAAGKAFIETYQQQHPDDEVKHIDL
                     FETYIPVIDKDVLTGWGKMSNGETLTDDEQMKVSRLSDILEEFLSADKYVFVTPMWNL
                     SFPPVVKAYIDAISIAGKTFKYSAEGPQGLLTDKKVLHIQSRGGYYTEGPAADFEMGD
                     RYLRTIMTFLGVPSYETIIIEGHNAEPHKTEEIKATSINNAEKLATTF"
     gene            73994..74767
                     /locus_tag="PF788_000065"
     CDS             73994..74767
                     /locus_tag="PF788_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein"
                     /protein_id="HDG6302361.1"
                     /translation="MKAHKIFWLNLAAIIIISIVVSGDMFLAMKWEQIHLKDGLKKVL
                     STYPIKNLETLYEIDGHDNPHYENNDQDTWYIESSYSVVGSDELLKEDRMLLKVDKNT
                     HKITGEYDTTTNDKKNATDSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQS
                     GDLTSILNSNDLKVTHDPTTDYYNLSGKLSNDNPNVKQLKRRYNIPKNASTKVELKGM
                     SDLKGNNHQDQKLYFYFSSPGKDQIIYKESLTYNKISEH"
     gene            complement(75065..77071)
                     /gene="ggt"
                     /locus_tag="PF788_000066"
     CDS             complement(75065..77071)
                     /gene="ggt"
                     /locus_tag="PF788_000066"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HDG6302362.1"
                     /translation="MVINLNDKQTKTSKEGLISVSHPLAAKIGKDVLDQGGNAMDAVI
                     AIQLALNVLEPFASGIGGGGYLLYYEQSTGSITAFDARETAPEHVDKQFYLDDSGEYK
                     SFFDMTTHGKTVAVPAIPKLFDYIHKRYAKLSLEDLINPAIELAIEGHAANWATEKYS
                     RQQHARLTKYHETAQVFTHENQYWREGDWIVQPELGKTFQILREQGFNAFYKGDIAKQ
                     LVNVVKACGGTITLEDLAKYDIQIKAPISATFKDYDIYSMGPSSSGGITVIQILKLLE
                     HVDLPSMGPRSVDYLHHLIQAMHLAYSDRAQYLADDNFHEVPVQSLIDDDYLKARSTL
                     IDSNKANIDIEHGVVSDCISHTDVEENHTETTHFCVIDKEGNIASFTTSIGMIYGSGI
                     TIPGYGVLLNTTMDGFDVVDGGINEIAPYKRPLSNMAPTIVMYHGKPILTVGAPGAIS
                     IIASVAQTLINVLVFGMDIQQAIDEPRIYSSHPNRIEWEPQFSQSTILALIAHGHAME
                     HKPDAYIGDVHGLQVDPTTYEASGGSDDTREGTVMGGEVLVIRKQPLPYRQMYDSDGF
                     RLYFNDVQLPLLADQVRWMHDKYWVDESVVRIIFPEVSAHIEDLRSYENAGENYIDIA
                     WLARKYAYQVTLKDDGLYLTDDTYTSVKRNTNAYYRYDRDSITR"
     gene            complement(77109..78884)
                     /locus_tag="PF788_000067"
     CDS             complement(77109..78884)
                     /locus_tag="PF788_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6302363.1"
                     /translation="MKKIISIAIIVLALVLSGCGVPTKSEVAQKSSKVEVKGERPTIH
                     FLGQASYENDMNIVKDQLENAGFNVKMNIQPDYGSYRTQRQAGNYDIQIDDWMTVFGD
                     PNYAMTALFSSTGSNSLLKDKHVDQLLNKASTQNEADVKQTYKQIEDEVVFDKGYMAP
                     LYGSKKNLVYDNKVLDKNSVGLPNSRALIWQQFDYNNSRERDTRPLVMTQQDGEIPTL
                     DPIRSIAPSVYSINMNMYTRLLLLDENDHLTTKGSLSHDYAVNKDNKAFYFLLRDDDY
                     FAKVVNGQARNTGERVSAEDVKFSLDRARDKKSVPNNNTYNMHKHINDIKILKDEDID
                     QLRKEKDKDDKSIYDKLIKAYNVKSLTTDGQKVNNKDGIYQIVKITTDQSMPREVNYL
                     THSSAGILSKKFVNQVNQEYPKGYGDSSTIPANSDGKNALYASGAYIMTQKNAYQATF
                     QRNPGFNETEKGSYGPAKIKNITLKFNGDPNNALSELRNHSIDMLADVNQKHFDLIKS
                     DKNLSIIRKNGRKSVFLMLNIKKGIFKTHPNLRQAVVNAIDQDQFIKFYRGDKFKIAS
                     PITPLVDTGNEQRQDLEKVEKAINQ"
     gene            complement(78901..80064)
                     /locus_tag="PF788_000068"
     CDS             complement(78901..80064)
                     /locus_tag="PF788_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6302364.1"
                     /translation="MAQLNSKIASLKLFASYAIATYILVILTSALNLFKGYVADTFYI
                     AETLLIVLTIILIIILTTEQTWKHHDLWRRIVEVLLLLMTLTGNVFTLLMFVSIRRYQ
                     RTSQIHSYNGWESFIRKTTRHRIAIIGLLILVYMLTLSIVSQFTFDTTLATKNQFNAL
                     LHGPSLAYPFGTDDFGRDLFTRVVVGTKLTFSISIISVVIAVIFGVLLGTIAGYFNHI
                     DNLIMRILDVVFAIPSLLLAVAIIASFGASIPNLIIALSIGNIPSFARTMRASVLEIK
                     RMEYVDAARITGENTWNIIWRYILPNAIAPMIVRFSLNIGVVVLTTSSLSFLGLGVAP
                     DVAEWGNILRTGSNYLETHSNLAIVPGVCIMFVVLAFNFIGDAVRDALDPRIH"
     gene            complement(80070..81548)
                     /locus_tag="PF788_000069"
     CDS             complement(80070..81548)
                     /locus_tag="PF788_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6302365.1"
                     /translation="MNCTFRLLTSNKFDMMLCLPIHKCVNLFYTFVYHSNLLKIILQG
                     VIIIITYLESFKSLYHKAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEI
                     EQALHQKYKYLSQQKSSTQIHKEALKIFKAQSSNTSSKNIEQAHFSTYFENVLFHKFI
                     MIKVILALPMFILLTFYLQPLVRYIFERIVMAVIVIIGVIVSVFTILYFSPLDAAYSI
                     LGQNATKAQIHQFNVLHHLNEPYFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIP
                     ITIIVAVLALMVALIIAIPIGIISAMKRNSWLDITLMIIALIGLSIPSFWQGLLFILA
                     FSLKLDILPPSYMPEHPISLILPVLVIGTSIAASITRMTRSSVLEVMRSDYVLTAYAK
                     GLSTTQVVIKHILKNAIIPIVTLVGLLVAELLGGSAVTEQVFNINGIGRYIVQKQLIP
                     DIPAVMGGVVYISIVISLANLIIDIFYALIDPKLRSEINERK"
     gene            81505..83097
                     /locus_tag="PF788_000070"
     CDS             81505..83097
                     /locus_tag="PF788_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6302366.1"
                     /translation="MSNLLEVNSLNVQFNYDETTVQAVKNVSFELRKKHILGIVGESG
                     SGKSITAKSILGLLPDYPDHTLTGEIIFNGQSLNNLSTSALQQIRGKDISMIFQDPLS
                     SLNPRLTIGKQITEVIFQHKRVSKSEAKSMTIDILEKVGIKHATRQFDAYPHELSGGM
                     RQRVMIAMALILKPQILIADEPTTALDASTQNQLLQLMKSLYEYTETSIIFITHDLGA
                     VYQFCDDVIVMKDGSVVESGTVESIFKSPQHTYTKRLIDAIPDIHQTRPPRPLNNDIL
                     LKFDRVSVDYTSPSGSLYRAVNDINLAIRKGETLGIVGESGSGKSTLAKTVVGLKEVS
                     EGFIWYNELPLSLFKDDELKSLRQEIQMIFQDPFASINPRFKVIDVIKRPLIIHGKVK
                     DNDDIIKTVVSLLEKVGLDQTFLYRYPHELSGGQRQRVSIARALAVEPKVIVCDEAVS
                     ALDVSIQKDIIELLKQLQLDFGITYLFITHDMGVINEICDRVAVMKNGEIVELNNTED
                     IIKHPQSDYAKQLISEVAVIAK"
     gene            complement(83362..84474)
                     /locus_tag="PF788_000071"
     CDS             complement(83362..84474)
                     /locus_tag="PF788_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES family NAD+ phosphorylase"
                     /protein_id="HDG6302367.1"
                     /translation="MKICEKCFNNTEIVEIIANDNSKFDNCDIDNNHLGVKIFDTTKD
                     IDKLELIRDYLRPALELYDISINLPDTFSPKEGKKIEIALKDDWSIFNVEEAQISCIL
                     NELFKDDENLDRRVLEDLVGAKIINDKKYTNKNLIVANNDWDGFCESLKYKNRFHNNM
                     INLENLAFFLDITTNYYSIEEFRERFEPLYRSRIVKFITEKSELMSPPKGFATAGRLN
                     SKWISVLYLSTKEQVSIEEVKPKHNDIIYIGKVKLQKNVTKEKLKIANLTNLTSNAIK
                     AGDDGFRKYFVNYQTLKKIHKGITNPSDEQGIDYLPFQYLADYIRSLKYDGIMYESIL
                     QDGTFNFVFFDQSLFECVNYERKRVSDVKYTLTKLS"
     gene            complement(84461..85384)
                     /locus_tag="PF788_000072"
     CDS             complement(84461..85384)
                     /locus_tag="PF788_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sce7725 family protein"
                     /protein_id="HDG6302368.1"
                     /translation="MYYPYLRGKQNELFAIRELLEKGLIGDCIQPIIEPIKYTTTFKN
                     TLQYCGEKAFSINLVVNSKLTEEEISNETVAHLTEIITKNKSVIQKAYLGPSDEGNDR
                     LKQQFSSNSLAILTSVDDWEMFGDKNKLEMVFVPDDRHIKRKLRNIPNKGIIMDPFNK
                     LSRNVDYLDNDDEFYSDDHLYYKEDGYVAFSDYSVIGGEYVDGGFSPLAIAIHIVYFD
                     EANELRVKHFVSDSNNDRSNPGKKFFEAVDKLVTWSKNLDIKNRSYALGQFEELNENN
                     KYPGLGLIKRLSIMHHLEIMNRYLESQNENM"
     gene            complement(85386..86228)
                     /locus_tag="PF788_000073"
     CDS             complement(85386..86228)
                     /locus_tag="PF788_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sce7726 family protein"
                     /protein_id="HDG6302369.1"
                     /translation="MDNRNMINRVFSQKILHQIAIKNKSDVVDEAYDFYIQGPKNINV
                     IQKMKSLYNYLKKSYRNEYFYKNTILNKLLLGRHSINTTTALSEMPIGKSIADFILLN
                     GKGVVYEIKTELDKLDRLDNQINDYYEVFNYVVVITNDKHLNKVMARYKDTTVGILVL
                     TTRNTLSEVQKPKENNSLLNTKAMYNFLRKEERKRVIAQNHMDVPTYNDFTEYDVLFD
                     VFKEIPMTKLHNNMISELKKRGNMKEYKDEFLAAPAEIKFLLYFAKMTKKDKNKLYHF
                     LKED"
     gene            complement(86433..89222)
                     /locus_tag="PF788_000074"
     CDS             complement(86433..89222)
                     /locus_tag="PF788_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDG6302370.1"
                     /translation="MAYQSEYALENEMMNQLEQLGYERVTIRDNKQLLDNFRTILNER
                     HADKLEGNPLTDKEFQRLLTMIDGKSIFESARILRDKLPLRRDDESEIYLSFLDTKSW
                     CKNKFQVTNQVSVEDTYKARYDVTILINGLPLVQVELKRRGIDINEAFNQVKRYRKQN
                     YTGLFRYIQMFIISNGVETRYFSNNDSELLKSHMFYWSDKQNNRINTLQSFAESFMRP
                     CQLAKMISRYMIINETDRILMAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLT
                     SFKASQILSQQDDIKKVIFLVDRKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDK
                     SLPLIVTTIQKMAKAIQGNAPLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKNAQ
                     YFGFTGTPRFPENSSQDGRTTADIFGRCLHTYLIRDAIHDGNVLGFSVDYINTFKNKA
                     LKAEDNSMVEAIDTEEVWLADKRVELVTRHIINNHDKYTRNRQYSSIFTVQSIHALIK
                     YYETFKRLNKKLEQPLTIAGIFTFKPNEDDRDGEVPYHSREKLEIMISDYNKKFETNF
                     STDTTNEYFNHISKNVKKGVKDSKIDILIVVNMFLTGFDSKVLNTLYVDKNLMYHDLI
                     QAYSRTNRVEKESKPFGKIVNYRDLKKETDDALRVFSQTNDTDTILMRSYEEYKKEFM
                     DAYRELKMIVPTPHMVDDIQDEEELKRFVEAYRLLAKIILRLKAFDEFEFTIDEIGMD
                     EQENEDYKSKYLAVYDQVKRATAEKNKVSILNDIDFEIEMMRNDTINVNYIMNILRQI
                     DLEDKAEQRRNQEQIRRILDHADDPTLRLKRDLIREFIDNVVPSLNKDDDIDQEYVNF
                     ESIKKEAEFKGFAGERSIDEQALKTISNDYQYSGVVNPHHLKKMIGDLPLKEKRKARK
                     AIESFVAETTEKYGV"
     gene            89435..89716
                     /locus_tag="PF788_000075"
     CDS             89435..89716
                     /locus_tag="PF788_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302371.1"
                     /translation="MVLITYQIILFFIISLSYYLTLNHYMAVTVGNFTSIFGMFAAIL
                     FMYYYLLYKSPEYNQRKRFKHFIHITNLIIIAFSTFVLVHLALKLFFSI"
     gene            complement(89910..90785)
                     /locus_tag="PF788_000076"
     CDS             complement(89910..90785)
                     /locus_tag="PF788_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDG6302372.1"
                     /translation="MTNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADV
                     TNVSTASIVRFSRKMTHQGFQELKIAISRYLPEDIATNPHLELIENESVETLKNKMIA
                     RATNTMRFVATNIMDAQIDAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVR
                     LLHETHLLVSTFATHDDRDCMIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPV
                     AQIADYALIYGRTDENEMRMAATTSLFAQLFTVDILYYRFVALNYHAILDCITQSKMA
                     LDNYRKHLATIDFKH"
     gene            complement(90788..92242)
                     /locus_tag="PF788_000077"
     CDS             complement(90788..92242)
                     /locus_tag="PF788_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDG6302373.1"
                     /translation="MTKEQQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQ
                     ELRHIDGVMGVIHDERIQVVVGPGTVNKVANHMAELSGVKLGDPIPHHHNDSEKMDYK
                     SYAADKAKANKEAHKAKQKNGKLNKVLKSIANIFIPLIPAFIGAGLIGGIAAVLSNLM
                     VAGYISGAWITQLITVFNVIKDGMLAYLAIFTGINAAKEFGATPGLGGVIGGTTLLTG
                     IAGKNILMNVFTGEPLQPGQGGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIAL
                     LIVGLLTIFIFMPLAGFVSDSLVSVVNGIISIGGVFSGFIIGASFLPLVMLGLHHIFT
                     PIHIEMINQSGATYLLPIAAMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFLGI
                     GEPLIYGVTLPLGRPFLTACIGGGIGGAVIGGIGHIGAKAIGPSGVSLLPLISDNMYL
                     GYIAGLLAAYAGGFVCTYLFGTTKAMRQTDLLGD"
     gene            complement(92254..93150)
                     /gene="murQ"
                     /locus_tag="PF788_000078"
     CDS             complement(92254..93150)
                     /gene="murQ"
                     /locus_tag="PF788_000078"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDG6302374.1"
                     /translation="MENSTTEARNEATMHLDEMTVEEALITMNKEDQQVPLAVRKAIP
                     QLTKVIKKTIAQYKKGGRLIYIGAGTSGRLGVLDAAECVPTFNTDPHEIIGIIAGGQH
                     AMTMAVEGAEDHKKLAEEDLKNIDLTSKDVVIGIAASGKTPYVIGGLTFANTIGATTV
                     SISCNEHAVISEIAQYPVEVKVGPEVLTGSTRLKSGTAQKLILNMISTITMVGVGKVY
                     DNLMIDVKATNQKLIDRSVRIIQEICAITYDEAMALYQVSEHDVKVATVMGMCGISKE
                     EATRRLLNNGDIVKRAIRDRQP"
     gene            complement(93150..94205)
                     /locus_tag="PF788_000079"
     CDS             complement(93150..94205)
                     /locus_tag="PF788_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000145567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF871 domain-containing protein"
                     /protein_id="HDG6302375.1"
                     /translation="MTGFSVYLGQPLDEAYIKRMIKQGYQMIFTSVQIPEEDDETKYH
                     YFTKLLNLLKHEQVTYLIDANPSILTPSFYDHLRQYDAQFMIRIDHSTSIEAIEAIMA
                     QGLKCCLNASIISRELLTSLHQQLNDFTLLSFCHNYYPRPDTGLSVDLVNKKNELIYQ
                     FNPKAQIYGFIVGSDLRGPLHKGLPTIEATRHSHPVVAAKLLQETGVSEVLVGDSLIE
                     MRQAKQLIDFCKHRHFTLCIEEVFDTTVTYLFDMCHKVRPDNPENVIRSETSRQICPH
                     SIQPQFTTQRRIGSVTVDNLNNGRYQGEMQIVRQTLSAHDNVNVVAQIIKEDLPLLSC
                     IEPNDTFDFQKTRECKK"
     gene            94791..96836
                     /locus_tag="PF788_000080"
     CDS             94791..96836
                     /locus_tag="PF788_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017431573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIABC"
                     /protein_id="HDG6302376.1"
                     /translation="MRKKLFGQLQRIGKALMLPVAILPAAGLLLAIGTAMQGESLQHY
                     LPFIQNGGVQTVAKLMTGAGGIIFDNLPMIFALGVAIGLAGGDGVAAIAAFVGYIIMN
                     KTMGDFLQVTPKNIGDPASGYASILGIPTLQTGVFGGIIIGALAAWCYNKFYNINLPS
                     YLGFFAGKRFVPIMMATTSFILAFPMALIWPTIQSGLNAFSTGLLDSNTGVAVFLFGF
                     IKRLLIPFGLHHIFHAPFWFEFGSWKNAAGEIIHGDQRIFIEQIREGAHLTAGKFMQG
                     EFPVMMFGLPAAALAIYHTAKPENKKVVAGLMGSAALTSFLTGITEPLEFSFLFVAPL
                     LFFIHAVLDGLSFLTLYLLDLHLGYTFSGGFIDYFLLGILPNKTQWWLVIPVGLVYAV
                     IYYFVFRFLIVKLKYKTPGREDKQSQAATASATELPYAVLEAMGGKANIKHLDACITR
                     LRVEVNDKSKVDVPGLKDLGASGVLEVGNNMQAIFGPKSDQIKHEMQQIMNGQVVENP
                     TTMEDDKDETVVVAEDKSATSELSHIVHAPLTGEVTPLSEVPDQVFSEKMMGDGIAIK
                     PSQGEVRAPFNGKVQMIFPTKHAIGLVSDSGLELLIHIGLDTVKLNGEGFTLHVEEGQ
                     EVKQGDLLINFDLDYIRNHAKSDITPIIVTQGNITNLDFKQGEHGNISFGDQLFEAK"
     gene            complement(96815..96916)
                     /locus_tag="PF788_000081"
     CDS             complement(96815..96916)
                     /locus_tag="PF788_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302377.1"
                     /translation="MMLQNTIAKKKQARHLMKVYAPVYSKHYLASNN"
     gene            97110..98750
                     /locus_tag="PF788_000082"
     CDS             97110..98750
                     /locus_tag="PF788_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-keto acid decarboxylase family protein"
                     /protein_id="HDG6302378.1"
                     /translation="MKQRIGAYLIDAIHRAGVDKIFGVPGDFNLAFLDDIISNPNVDW
                     VGNTNELNASYAADGYARLNGLAALVTTFGVGELSAVNGIAGSYAERIPVIAITGAPT
                     RAVEQGGKYVHHSLGEGTFDDYRKMFAHITVAQGYITPENATTEIPRLINTAIAERRP
                     VHLHLPIDVAISEIEIPTPFEVTATKYTDASTYIELLATKLHQAKQPIIITGHEINSF
                     HLHQELEDFVNQTQIPVAQLSLGKGAFNEENPYYMGIYDGKIAEDKIRDYVDNSDLIL
                     NIGAKLTDSATAGFSYQFNIDDVVMLNHHNIKIDDVTNDEISLPSLLKQLSNISYTNN
                     ATFPAYHRPTSPDYTVGTEPLTQQTYFKMMQNFLKPNDVIIADQGTSFFGAYDLALYK
                     NNTFIGQPLWGSIGYTLPATLGSQLADKDRRNLLLIGDGSLQLTVQAISTMIRQHIKP
                     VLFVINNDGYTVERLIHGMYEPYNEIHMWDYKALPAVFGGKNVEIHDVESSKDLQDTF
                     NAINGHPDVMHFVEVKMAVEDAPKKLIDIAKAFSQQNK"
     gene            98817..99374
                     /locus_tag="PF788_000083"
     CDS             98817..99374
                     /locus_tag="PF788_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000606891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HDG6302379.1"
                     /translation="MINFNKTALVLIDLQEGILKMDYAPYTAENVVQNANKLIDVFRK
                     NNGFIAFVRVNFYDGKDVLQPNAMISLPPKEGDDYSRFHHLLDKRDDDFVIDKRHFSA
                     FVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNETLH
                     QFPIDNVFPLMGQTITTNDFLNILN"
     gene            99650..101005
                     /gene="brnQ"
                     /locus_tag="PF788_000084"
     CDS             99650..101005
                     /gene="brnQ"
                     /locus_tag="PF788_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDG6302380.1"
                     /translation="MKKKLTFKENMFIGSMLFGLFFGAGNLIFPIHLGQAAGSNVFIA
                     NLGFLITAIGLPFLGIIAIGISKTSGLFEIASRVNKTYAYIFTIALYLVIGPFFALPR
                     LATTSFEIAFSPFLSPKQITLYLFIFSFVFFVIAWFFARKPSRILEYIGKFLNPVFLV
                     LLAIILLFAFIHPLGGISDAPISKQYQSHALFNGFLDGYNTLDALASLAFGIIIVATI
                     KKLGIENPTDIAKETIKSGTISIIMMGIIYTLLAIMGTLSIGHFKLSENGGIALAQIT
                     QYYLGNYGIVLLSLIVMVACLKTAIGLITAFSETFEHLFPKMNYLAIATVVSFISFLF
                     ANVGLTKIIMYSVPVLMFLYPLAIALIVLTLFSSKFHHSKLIYQCTIFFTMIAALVDG
                     LKASPEFISSTSFSQTLINFSQKYLPLSDIGMGWVVLSLIGFIIGFIIYKIKHRKIPQ
                     A"
     gene            101258..102442
                     /gene="rocD"
                     /locus_tag="PF788_000085"
     CDS             101258..102442
                     /gene="rocD"
                     /locus_tag="PF788_000085"
                     /EC_number="2.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDG6302381.1"
                     /translation="MNSIIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCIS
                     GFSVANQGHCHPTIVKAMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKVLPLNS
                     GTEAVEAAIKIARKWGSEVKGITDGQVEIIAMNNNFHGRTLGSLSLSNHDAYKAGFHP
                     LLQGTTTVDFGDIEQLTQAISPNTAAIILEPIQGEGGVNIPPKGYIQAVRQLCDKHQI
                     LLIADEIQVGLGRTGKWFAMEWEQVVPDIYILGKALGGGLYPVSAVLANNDVMRVLTP
                     GTHGSTFGGNPLAIAISTAALDVLKDEQLVERSERLGSFLLKALLQLKHPSIKEIRGR
                     GLFIGIELNTDAAPFVDQLIQRGILCKDTHRTIIRLSPPLVIDKEEIHQIVAAFQDVF
                     KN"
     gene            102481..103512
                     /locus_tag="PF788_000086"
     CDS             102481..103512
                     /locus_tag="PF788_000086"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDG6302382.1"
                     /translation="MIKVGIVGGSGYGAIELIRLLQTHPHVTIAHIYSHSKVDEPLKL
                     TFPHLQHIMQHFEALTVDNNDCDVIFFATPAPVSKTCIPPLVEKGIHVIDLSGAFRIK
                     NREIYEAYYKETAAAQDDLNHAIYSISEWQSFDNNGTKLISNPGCFPTATLLALHPLI
                     SEKIVDLSSIIIDAKTGVSGAGRSLSQRVHFSEMNENLSAYAIGNHKHKPEIEQYLSI
                     IAGQDVSVIFTPHLVPMTRGILSTIYVKLSSEYTTESLHKLMTSYYANQPFVRIRDIG
                     TFPTTKEVLGSNYCDIGIYVDETTQTAILVSVIDNLVKGASGQAIQNLNILYDFEVTT
                     GLNQSPVYP"
     gene            103524..104765
                     /gene="argJ"
                     /locus_tag="PF788_000087"
     CDS             103524..104765
                     /gene="argJ"
                     /locus_tag="PF788_000087"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HDG6302383.1"
                     /translation="MKHQETTSQQYNFSIIKHGDISTPQGFTAGGMHIGLRANKKDFG
                     WIYSSSLASAAAVYTLNQFKAAPLIVTEDTLQKSKGKLQALVVNSANANSCTGQQGID
                     DARQTQTWVAQQLQIPSEHVAVASTGVIGEYLPMDKIKTGTEHIKDANFATPGAFNEA
                     ILTTDTCTKHIAVSLKIDGKTVTIGGSTKGSGMIHPNMATMLAFITTDASIESNTLHQ
                     LLKSSTDHTFNMITVDGDTSTNDMVLVMANHQVEHQILSQDHPQWETFVDAFNFVCTF
                     LAKAIARDGEGATKLISVNVSGAKSISDARKIGKTIVSSNLVKSAIFGEDANFGRIIT
                     AIGYSGCEIDPNCTYVQLNQIPVVDKGMAVLFDEQAMSNTLTHENVTIDVQLGLGNAA
                     ATAYGCDLSYDYVRINASYRT"
     gene            104781..105545
                     /gene="argB"
                     /locus_tag="PF788_000088"
     CDS             104781..105545
                     /gene="argB"
                     /locus_tag="PF788_000088"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDG6302384.1"
                     /translation="MKFIVIKIGGSTLSDMHPSIINNIKHLRSNNIYPIIVHGGGPFI
                     NEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLD
                     AQLFEITSFDQQYGYVGVPTALNKDALQYLCTKFVPIINSIGFNNHDGEFYNINADTL
                     AYFIASSLKAPIYVLSNIAGVLINDVVIPQLPLVDIHQYIEHGDIYGGMIPKVLDAKN
                     AIENGCPKVIIASGNKPNIIESIYNNDFVGTTILNS"
     gene            105815..106294
                     /locus_tag="PF788_000089"
     CDS             105815..106294
                     /locus_tag="PF788_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HDG6302385.1"
                     /translation="MGIFIYAGIIGGLLSGIVKLGWEVMFPPRTPERNATNPPQELLQ
                     QLGFSSEFTHQTYTFSNMELPWVSFIVHFSFSIVIAIIYCILVKKYAYLAMGQGAVFG
                     IAIWVLFHLIIMPIMHTVPAVWDQPFQEHLSEFFGHIVWMMTIELVRQHFVYRYKLN"
     gene            complement(106622..107266)
                     /locus_tag="PF788_000090"
     CDS             complement(106622..107266)
                     /locus_tag="PF788_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDG6302386.1"
                     /translation="MTVFVMQLQSNLKSIEELISQSRWSYKKPRTVNYRYNQDKLMHR
                     LGDILVQYGIQHDTGLLPHEWHYHISPRGKADIVQHNRDGQPIYVSLSYSYPYIVCVV
                     DKEPVGIDIEKISQRLDWRTLVTCFSTNEAHQICSLNDFYQIWTQKESFTKLIGEGLI
                     KGLDIYDMTQSHFYQSREVKFKQFIFDQFMVQVCFLGQAPWGYKKVSVFQLLSS"
     gene            complement(107279..114454)
                     /locus_tag="PF788_000091"
     CDS             complement(107279..114454)
                     /locus_tag="PF788_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HDG6302387.1"
                     /translation="MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMY
                     ALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELS
                     TYHFNDSPLFKVKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTR
                     QHAHINRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYFPIKHPFEQALYQTYLIDD
                     MTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQ
                     RFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLA
                     DIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTE
                     RDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDL
                     AHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKD
                     VTPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNP
                     KGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKK
                     EQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVD
                     LLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCG
                     VGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLY
                     RKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNK
                     IKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHL
                     LCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFE
                     LAQAIAKVQEQNYEVIPETIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSE
                     LNVAQLRQAVQRLIARHEILRTQYIVVDDEVRQRIVADVAVDFEEVNTHFTDEQEIMR
                     QFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLL
                     PLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFT
                     MNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQM
                     LGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRN
                     PLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYTINIEYNTD
                     LYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGN
                     KSIISYFNEVVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFT
                     ERSFEMIAAMLATVKVGASYIPIDIDFPNKRQGAILEDAKVTAVMSYGVEIETTLPVI
                     QLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLL
                     NLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQ
                     QLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPS
                     ESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAI
                     GYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELD
                     EIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQVEQDLKQYLNDQLPKYMIPKT
                     ITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVG
                     VDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQQSLVALP
                     DNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEVLQGYSHRIYCF
                     IRADNEEIAWYKLMTNLNDYFSEETVEIMLSNIEVIVGDFECMDDVVLPENMDTIIHA
                     GARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSE
                     ADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTNPYNGRWHMRNIKTN
                     RFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMP
                     VKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMN
                     HISEKWPTITNNWLYHWAQYIKTIFNK"
     gene            complement(114901..116151)
                     /locus_tag="PF788_000092"
     CDS             complement(114901..116151)
                     /locus_tag="PF788_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6302388.1"
                     /translation="MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGI
                     YLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFC
                     VAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGY
                     SMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLV
                     LKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMIN
                     TVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGE
                     IIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMF
                     IVLTIGASMLVAGVFGGQKQVNTN"
     gene            complement(116537..117562)
                     /locus_tag="PF788_000093"
     CDS             complement(116537..117562)
                     /locus_tag="PF788_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent formate dehydrogenase"
                     /protein_id="HDG6302389.1"
                     /translation="MKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADN
                     GEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNI
                     GVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIG
                     IFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLT
                     PETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAP
                     ADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIA
                     SKSYTAK"
     gene            complement(117735..118094)
                     /locus_tag="PF788_000094"
     CDS             complement(117735..118094)
                     /locus_tag="PF788_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2294 domain-containing protein"
                     /protein_id="HDG6302390.1"
                     /translation="MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAH
                     MTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDID
                     LNDDEVISIFVFDKSIE"
     gene            complement(118311..119342)
                     /locus_tag="PF788_000095"
     CDS             complement(118311..119342)
                     /locus_tag="PF788_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDG6302391.1"
                     /translation="MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALR
                     KNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLS
                     NPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFIL
                     RANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQ
                     IPIGLGSIKSSLELIDAFSNVQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTS
                     HLNELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHL
                     GKLEAELKG"
     gene            complement(119355..120116)
                     /locus_tag="PF788_000096"
     CDS             complement(119355..120116)
                     /locus_tag="PF788_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6302392.1"
                     /translation="MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVG
                     KSIWSFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLI
                     RPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLN
                     LTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLN
                     LEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE"
     gene            complement(120113..121087)
                     /locus_tag="PF788_000097"
     CDS             complement(120113..121087)
                     /locus_tag="PF788_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDG6302393.1"
                     /translation="MKRLSIIVIIGIFIITGCDWQRTSKERSKNAQNQQVIKIGYLPI
                     THSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQ
                     KGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQL
                     KIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDA
                     YCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSA
                     AWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS"
     gene            complement(121101..121841)
                     /locus_tag="PF788_000098"
     CDS             complement(121101..121841)
                     /locus_tag="PF788_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6302394.1"
                     /translation="MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLL
                     NIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGLQQKISDE
                     EINAQLKLVDLEDRGKHFPEQLSGGMKQRVALCRAHVHKPNVISMDEPLGALDAFTRY
                     KLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRN
                     DSHLLKIRNEIMETFALNHHQVEPEYYL"
     gene            complement(122183..122695)
                     /locus_tag="PF788_000099"
     CDS             complement(122183..122695)
                     /locus_tag="PF788_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HDG6302395.1"
                     /translation="MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENL
                     THGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIP
                     EGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAV
                     DTPIDGIEKL"
     gene            122874..123077
                     /locus_tag="PF788_000100"
     CDS             122874..123077
                     /locus_tag="PF788_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302396.1"
                     /translation="MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILK
                     PKDVVLDVDSIKEIDENHLNDAT"
     gene            complement(123139..124098)
                     /locus_tag="PF788_000101"
     CDS             complement(123139..124098)
                     /locus_tag="PF788_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDG6302397.1"
                     /translation="MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVI
                     EFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAF
                     LNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTVILVRSLKQED
                     NINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRN
                     AWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEG
                     DDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT"
     gene            complement(124744..126231)
                     /locus_tag="PF788_000102"
     CDS             complement(124744..126231)
                     /locus_tag="PF788_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HDG6302398.1"
                     /translation="MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHI
                     TRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGK
                     PIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNF
                     PMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESG
                     NAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVE
                     GIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGNPQDEATQMGSQTG
                     KDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEI
                     FGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQ
                     VPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY"
     gene            126658..127041
                     /locus_tag="PF788_000103"
     CDS             126658..127041
                     /locus_tag="PF788_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDG6302399.1"
                     /translation="MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDR
                     FYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLII
                     MVIIQTAVLFTFVKTLPKSNHKIEE"
     gene            127048..127374
                     /gene="isdI"
                     /locus_tag="PF788_000104"
     CDS             127048..127374
                     /gene="isdI"
                     /locus_tag="PF788_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylobilin-forming heme oxygenase IsdI"
                     /protein_id="HDG6302400.1"
                     /translation="MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLN
                     TEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDI
                     GYHYQK"
     gene            complement(127439..128584)
                     /gene="cap8P"
                     /locus_tag="PF788_000105"
     CDS             complement(127439..128584)
                     /gene="cap8P"
                     /locus_tag="PF788_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8P"
                     /protein_id="HDG6302401.1"
                     /translation="MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDML
                     DSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFV
                     GSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFE
                     NKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVVLLTAHRRENIGEPMHQIF
                     KAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSY
                     LVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIED
                     DEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRTDKPDEFVPLRHK"
     gene            complement(128661..129923)
                     /gene="cap8O"
                     /locus_tag="PF788_000106"
     CDS             complement(128661..129923)
                     /gene="cap8O"
                     /locus_tag="PF788_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8O"
                     /protein_id="HDG6302402.1"
                     /translation="MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQI
                     SIEEPGLQEVYEEVLSSGKLKVSTTPDASDVFIIAVPTPNNDDQYRSCDISLVMRALD
                     SILSFLEKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILE
                     ELVHNNRIIGGVTEACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALA
                     NELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKL
                     IQTGREINNSMPAYVVDTTKQIIKVLSGNKVTVFGLTYKGDVDDIRESPAFDIYELLN
                     QEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVI
                     FDTKNVVKSSFEDVSYYNYGNIFNFIDK"
     gene            complement(129977..130864)
                     /gene="capN"
                     /locus_tag="PF788_000107"
     CDS             complement(129977..130864)
                     /gene="capN"
                     /locus_tag="PF788_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide type 5/8 biosynthesis
                     epimerase CapN"
                     /protein_id="HDG6302403.1"
                     /translation="MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSF
                     KDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYG
                     KEGHVGKSDQVDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCP
                     GNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTS
                     SVMYEIRRQSHRKTVLINMPSMLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEIIPG
                     KMSLVIADIMDETTTKDKA"
     gene            complement(130864..131421)
                     /gene="cap8M"
                     /locus_tag="PF788_000108"
     CDS             complement(130864..131421)
                     /gene="cap8M"
                     /locus_tag="PF788_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8M"
                     /protein_id="HDG6302404.1"
                     /translation="MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPT
                     INNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEM
                     SIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTH
                     QSMMLDMYIIYKTIKNIVTSEGVHH"
     gene            complement(131432..132637)
                     /gene="cap8L"
                     /locus_tag="PF788_000109"
     CDS             complement(131432..132637)
                     /gene="cap8L"
                     /locus_tag="PF788_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8L"
                     /protein_id="HDG6302405.1"
                     /translation="MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGW
                     PYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKY
                     DQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYI
                     NRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKA
                     YREQYDKILLYSGNMGQLQDMETLISFLKLNKDQSQTLTILCGHGKKFADVKTAIEDH
                     RIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKALVLIMD
                     KQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREIN
                     TMKYYNLLK"
     gene            complement(132638..133843)
                     /locus_tag="PF788_000110"
     CDS             complement(132638..133843)
                     /locus_tag="PF788_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HDG6302406.1"
                     /translation="MAKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSI
                     LTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFASILLISILIESIALIIVFL
                     YFFNLNIIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYY
                     LTQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLY
                     LDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKT
                     NLIAIAALCLVMIICYPITIIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLN
                     TKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKS
                     KFINKKDVD"
     gene            complement(133836..135002)
                     /locus_tag="PF788_000111"
     CDS             complement(133836..135002)
                     /locus_tag="PF788_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDG6302407.1"
                     /translation="MKFFVLCAIISMNIFIVISTFTKEVLGFPIEPVYYSTMVGIALI
                     TTVFAIYKIIVTQEIPRGLILLIAICLLYLAFYYFSPDKEEKLAKNNILFFLTWAVPA
                     AISGIYIKYINKATVERFFKLVFFIFSVSFIFVILIPKLTGEIPSYINFGLMNYQNAS
                     YLSAFTAGLGIYFIMKGSVKHKWIYVLFTIIDIPIVFIPGGRGGAILLILYGLFAFIL
                     ITFKRGIPIAVKSIMYIFALSISSVLIYFLFTKGSNTRTFSYLQGGTLNLEGTSGRGP
                     IYEKGIYFIQQSSLLGYGPFNYYKLIGNIPHNIIIELILSFGLLGFFIIMICILLLVY
                     KMIRNYDPNTIDLLVMFIAIYPITLLMFSSNYLVVSEFWFVLFYFITKGRRHHG"
     gene            complement(135016..136125)
                     /locus_tag="PF788_000112"
     CDS             complement(135016..136125)
                     /locus_tag="PF788_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDG6302408.1"
                     /translation="MRILNIVSSNIVQDPRVLKQIETIKGVTDDYKIVGMNNSQATNK
                     RLENLDCNYRLLGSKVDPKNILSKLIKRIRFATGVIREIKAYKPDVIHANDFDVLLMV
                     YLSNYKKANIVYDAHEIYAKNAFINKVPLISKFVESIEKHIVKHRVNAFVTVSHAAKE
                     YYQSKGYKKEANVITNAPILNDSREFKEIENFKEIVYQGQIVMDRGYEEFIIASSAFK
                     QNAPSFIIRGFGPHEEVIKELISYNPENIRLDKPVEVKELVDKLAESNVGVVLTKPVS
                     INFEYTVSNKIFECIHAGLPVILSPVKEHIYLNEKYKFGIVLKEVTPLEIEKAVRKLR
                     DNHDLFNHLRQNAIKASKILNWQIESERLVELYKF"
     gene            complement(136130..136756)
                     /locus_tag="PF788_000113"
     CDS             complement(136130..136756)
                     /locus_tag="PF788_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic acetyltransferase"
                     /protein_id="HDG6302409.1"
                     /translation="MRIAIEKIIGLLKNQSSKESNVKIHRLAYITNSKFDGNNYIDRW
                     CKIRNSHIGEYSYIGFGSDFNNVEVGRYCSISSDVKIGLGKHPTHFFSSSPIFYSNNN
                     PFNIKQKFIDFNDQPSRTTIKNDVWIGANVIIMDGLTINTGAVIAAGSVVTKNVGAYE
                     VVGGVPAKVIKKRFDNKTIEKLLESKWWEKTPDKLKGFSVEYLNKKDT"
     gene            complement(136759..137883)
                     /gene="cap8G"
                     /locus_tag="PF788_000114"
     CDS             complement(136759..137883)
                     /gene="cap8G"
                     /locus_tag="PF788_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8G"
                     /protein_id="HDG6302410.1"
                     /translation="MEKLKLMTIVGTRPEIIRLSSTIKACDQYFNQILVHTGQNYDYT
                     LNQIFFDDLELRQPDHYLEAVGSNLGETMGNIIAKTYDVLLREQPDALLILGDTNSCL
                     AAVSAKRLKIPVFHMEAGNRCFDQNVPEEINRKIVDHVSDVNLPYTEHSRRYLLDEGL
                     NKANIFVTGSPMTEVIEAHRDKINHSDVLNKLGLEPQQYILVSAHREENIDNEKNFKS
                     LMNAINDIAKKYKMPVIYSTHPRSWKKIEESKFEFDPLVKQLKPFGFFDYNALQKDAF
                     VVLSDSGTLSEESSILKFPGVLIRTSTERPEVLDKGTVIVGGITYNNLIQSVELAREM
                     QNNNEPMIDAIDYKDTNVSTKVVKIIQSYKDIINRNTWRK"
     gene            complement(137887..138996)
                     /gene="cap8F"
                     /locus_tag="PF788_000115"
     CDS             complement(137887..138996)
                     /gene="cap8F"
                     /locus_tag="PF788_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8F"
                     /protein_id="HDG6302411.1"
                     /translation="MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESAL
                     LKADFVVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNP
                     YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQ
                     VNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQS
                     RLDRTLPKLDNLFEKDLYSTYLSYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSV
                     NISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVG
                     YTHNIENLGDTDMVTIMWVNEMFDPNQPDTYFLEV"
     gene            complement(139009..140037)
                     /gene="cap8E"
                     /locus_tag="PF788_000116"
     CDS             complement(139009..140037)
                     /gene="cap8E"
                     /locus_tag="PF788_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8E"
                     /protein_id="HDG6302412.1"
                     /translation="MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDD
                     IRKKYNNSKLKFYIGDVRDSQSVETAMRDVYYVFHAAALKQVPSCEFFPVEAVKTNII
                     GTENVLQSAIHQNVKKVICLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLIC
                     GTRYGNVMASRGSVIPLFIDKIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAET
                     GDIMVQKAPSSTVGDLATALLELFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMG
                     DYFRVPADSRDLNYSNYVETGNEKITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNEL
                     NDYKASMR"
     gene            complement(140027..141851)
                     /gene="cap8D"
                     /locus_tag="PF788_000117"
                     /pseudo
     CDS             complement(140027..141851)
                     /gene="cap8D"
                     /locus_tag="PF788_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498717.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8D"
     gene            complement(141871..142635)
                     /gene="cap8C"
                     /locus_tag="PF788_000118"
     CDS             complement(141871..142635)
                     /gene="cap8C"
                     /locus_tag="PF788_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8C"
                     /protein_id="HDG6302413.1"
                     /translation="MIDIHNHILPNIDDGPTNETEMMDLLKQATTQGVTEIIVTSHHL
                     HPRYTTPIEKVKSCLNHIESLEEVQALNLKFYYGQEIRITDQILNDIDRKVINGINDS
                     RYLLIEFPSNEVPHYTDQLFFELQSKGFVPIIAHPERNKAIRQNLDILYDLINKGALS
                     QVTTASLAGISGKKIRKLAIQMIENNLTHFIGSDAHNTEIRPFLMKDLFNDKKLRDYY
                     EDMNGFISNAKLVVDDKKIPKRMPQQDYKQKRWFGL"
     gene            complement(142638..143324)
                     /gene="cap8B"
                     /locus_tag="PF788_000119"
     CDS             complement(142638..143324)
                     /gene="cap8B"
                     /locus_tag="PF788_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 8 capsular polysaccharide synthesis protein
                     Cap8B"
                     /protein_id="HDG6302414.1"
                     /translation="MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRL
                     LVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMRKPTQNYIFNEQNNNGLSSLII
                     GRTTMSEAITSTEIENLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPP
                     VNTVTDAQLYARAIKDSLLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKS
                     SSYYHYYGDE"
     gene            complement(143340..143981)
                     /gene="capA"
                     /locus_tag="PF788_000120"
     CDS             complement(143340..143981)
                     /gene="capA"
                     /locus_tag="PF788_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000431756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide type 5/8 biosynthesis
                     protein CapA"
                     /protein_id="HDG6302415.1"
                     /translation="MKEVLQKNLKILIILPLLFLIISAIVTFFVLSPKYQANTQILVN
                     QTKGDNPQFMAQEVQSNIQLVNTYKEIVKSPRILDEVSKDLNDKYSPSKLSSMLTITN
                     QENTQLINIQVKSGHKQDSEKIANSFAKVTSKQIPKIMSVDNVSILSKADGTAVKVAP
                     KTVVNLIGAFFLGLVVALIYIFFKVIFDKRIKDEEDVEKELGLPVLGSIQKFN"
BASE COUNT        46047 a        26973 c        22061 g        48904 t
ORIGIN      
        1 ataatcatta aaaggtatta accttaataa tatattctct cgtctcaacc ttaatcgtat
       61 acttcagacg tctgtttgta gacaataaaa gtcattcacg tcttcatatg tcatcaaatg
      121 tttatcatga tatgatgaat ataataatcg ggtatataac tgtatgatta attacacaat
      181 aaagagaagg aatataatat gaaaaaagtg tcaattaaag atgttgctag agaagctggt
      241 gtatcagtta caactgtgtc acatatttta aatcataatg atagtcgttt ttccgcaaca
      301 acgataaaaa acgtacatgc tgtttcagaa cgtttaggct atgcccctaa taaacatgca
      361 aaacaattgc gcggcagtaa aattcaaact attggcgtca ttttgcctag cttaacaaat
      421 ccgtttttct cagcactgat gcaaagtatt catgaccata aaccatctga tgttgattta
      481 tgctttttaa catctacagc aactgatttg tatgacaata ttaaacattt aattgatcga
      541 ggtattgacg gattaattat cgcacaatac atatcatccc cggacgccct aaataactat
      601 ctaaagaaac atcatgtacc ttatgtcgta ctggatcaaa atgaccatca aggctataca
      661 gattttgttc ggacaaatga atatcaaggt ggacaacttg cagcacaaca tttaatagaa
      721 ctcggtcaca accatatgat aattgttgca ccatatgaca tgatggcgaa tatgtcgact
      781 cgtgtcgctg gatttgtcga tactttgcgc gcgaatcaat tgccagaacc acaaatcgtc
      841 catactgaat tatctaagcg cggtgggcta accattgttg atgacatcat ggttcaatct
      901 gccactgcaa tcttcgctat taacgatgaa ctcgctattg gcattttacg aggactaatt
      961 gaacatggca tcagtatccc gaaagatatc tcattaatag gttatgacga cattgattat
     1021 gcagcgtacg tctcgccacc tttaactact gtggcacaac ctataactga tattggcaaa
     1081 acatctttaa ccttattact tcaacgatta cagcacttag ataaatccat tgatatgatt
     1141 gaattaccaa cgactttaaa aattcgtgca acaactggct atcatctttc aaactaacta
     1201 cgtatcttcc gaaatatact catcattgtt aggcccttag cgttgcttta atgctgaggg
     1261 tttttaatca taattatttt actaagaaat taaaataata atgtatgaat ttttaaatat
     1321 gatttaaacg ttttcagttt ttatgaaaac gcatgcattt tacaaataaa aatggtacga
     1381 tggcactggt aaaacgtttt actaaaaaca aatcatgagg tgtataacat gagcattgtt
     1441 gcattactta tcgggttagg ccccttaatt ggctggggct tcttcccaac agtcgcttca
     1501 aagtttggtg gtaaacctgt acatcaaatt atcggtgcta ctgtaggtac gttaatcttc
     1561 gctattatat tagccgtagt cacatcaagt ggcttaccta ctggaaccaa tttgctattc
     1621 gccttattat caggtgcagg atggggattc ggacaaatca ttacatttaa agcgttcgaa
     1681 ttagtcggct catctcgtgc catgccagtc acaacagcat tccaattatt aggcgcatct
     1741 ttatggggtg tctttgcatt aggaaattgg ccaggcattg gtcataaaat cattggattt
     1801 acagctttag tcgttattct aattggagcg cgtatgacag tttggagtga acgcaaagaa
     1861 gcaagtaacg ccaaaaattt acgtcgtgca gtggtacttc tgttaattgg tgaatttgga
     1921 tactggttat attcagctgc accgcaagca acttctattg atggcctaac tgccttttta
     1981 cctcaagcaa tgggtatggt aattgttgca gtcatttatg gctttatgaa tatgaaagca
     2041 gagaatccat tccgtaataa aattacgtgg ttacaaatta tttcaggttt cttctttgca
     2101 tttggtgctt taacatatct tatttcagca caacctaata tgaatggttt agcaactgga
     2161 tttattcttt ctcaaacatc cgttgtgctt gctacattaa ctggtattta tttcttaaaa
     2221 caacataaaa cgtcaaaaga aatggttatt acaatcatcg gcttagtact cattttagta
     2281 gccgcttctg ttacagtatt tataaaataa ggagtgtaga tgtcatgaaa aaatcagcta
     2341 ttttaaatga acatatttca aaagcaatcg cgacaattgg tcattttgat ttattaacga
     2401 ttaatgacgc tggcatgcca attccaaatg atcatcgtcg tatcgaccta gctgtaacta
     2461 aaaacttacc acgctttatt gatgtcttag ctacagtgtt agaagaaatg gaaatccaaa
     2521 aaatatactt agcagaagaa ataaaagaac ataaccctac acaattgcaa caaattaaac
     2581 aattgatttc atcggaaatc gaaatcattt tcattcctca cgaagaaatg aaaagtaact
     2641 tagctcaccc attaaataaa ggtaatattc gtactggtga aacaacgccc tactctaata
     2701 ttgcattaga atcgaatgtt actttttaaa agttataact tgaaaggagc gtacacatga
     2761 ccaacaaagt tgttatttta ggttcaacga atgtcgatca atttttaaca gttgaaagat
     2821 atgcacaacc aggcgaaaca ttacatgttg aagaagcaca aaaagcattc ggcggaggta
     2881 aaggtgccaa ccaggctatt gccactgcac gcatgcaagc agacacaaca tttattacta
     2941 aaattggcac tgatggcgtt gctgatttca tcttagaaga ttttaaagta gctcatattg
     3001 atacatcata tattatcaaa acagctgaag caaaaacggg ccaagccttt atcactgtga
     3061 atgcagaagg acaaaacacc atctatgttt atggtggtgc gaatatgacg atgacacctg
     3121 aagatgttat taacgcaaaa gacgctataa tcaatgcaga ctttgtcgtt gcacaattag
     3181 aagtacccat cccggctatt atatctgcat ttgaaattgc caaggcacat ggtgtgacga
     3241 cagtattaaa tcctgcacca gcgaaagcat tacctaatga attattatca ttaatcgata
     3301 ttattgtgcc aaacgaaaca gaagccgaat tgttatctgg gattaaagta actaatgaac
     3361 aatctatgaa agacaatgcc aattactttt tatctatagg cattaagact gttttgatta
     3421 cgctaggtaa gcaaggtaca tattttgcta ctaaaaatca aagccaacac atcgaagctt
     3481 ataaagtaaa tgcgattgat acaactgctg caggcgacac atttattggt gcatttgtca
     3541 gtcgcttaaa caagtcgcaa gataacttag cagatgctat tgattttggt aataaagcga
     3601 gctcactcac tgtacaaaaa cacggcgcgc aagcatctat tcctctacta gaagaagtaa
     3661 atcaagttta aatgaatcaa acacagctat gatatgaagg tttagcatat aacatgcaac
     3721 attcgtatat catggctgtg cttttttatc tttataaaac atcatctatt agaaataatt
     3781 ttccactaaa cctatgcttg ttgactcatg tttagttata aatgaagtga caattttttg
     3841 taatcttttt aacttccaaa ttatcgcata taaatatgct atattaatga taataattat
     3901 caattaaaag gaggttatgc tatgtctaaa gaagctggtc atacattttt agctaaatta
     3961 ggaaaaactc gtctacgccc cggtggtaaa gaagcaacag attggttaat acaacaaggg
     4021 gcattttcac aagataaaca agtgttagaa gtggcatgta atatgtgcac aacatctatt
     4081 tatctagctc atacatatgg ctgtcacatt caaggcgttg atataaataa gaaagcatta
     4141 gaaaaagcac aggaaaacat ttcagcagca ggtcttgaat catatattca agttcaacaa
     4201 gcgaatgctg ttaaattgcc ctttgatgac aatcaattcg atatcgtttt aaatgaagca
     4261 atgttaacaa tgttacccat cgccataaag gaaaaagcat tacgcgagta ctaccgagtc
     4321 ttaaagcctg ggggtatctt gttaacacat gatattgtca tcgttaatga atcacatgcc
     4381 acacatgttg ttaaatcatt atctgcagca attaatgtca atgtctcacc gcagacgaaa
     4441 cttggctggt tagatttata taatcaagct ggttttaatc atgtgcatta tcatactggt
     4501 ccaatgagtt taatgacacc aaaaggttta atttatgacg aaggtattgt tggaactata
     4561 aagattatca acaatgcttt gaaaaaagaa aatcgaccaa tgttttgtaa aatgtttaaa
     4621 acgatgacta aattgcgtaa agatatgaat tatattactt ttgtcgctaa aaaagagcac
     4681 taaatataat gccactaact gtactttgta tctatgtttg actatcactt taatttcttt
     4741 gtgacactaa tcatctactt aacaatatcg ttatcgttga ttagtaagtc atcaattttg
     4801 gttaaagact ttcataaaca ctcaaacatt aacactatac atagttagtg gcattatttt
     4861 tttcttaaaa ttttaacatc acgggattgg aacagaaatg atattttcgc aaaatttatt
     4921 tctgtccttc cccaacttgc attacctgta gaatttcttt tcgaatttct ctgtgttggg
     4981 gccccgccaa cttgcattac ctgtagaatt tcttttcgaa attctttgtg ttgggggccc
     5041 gccattataa cactgtaggt cctactatat taatttatgt ctcgggctct aaccctaaaa
     5101 tacttataat atacctttat aatttatctc catttgatgc tatcacttgt tgataccaat
     5161 agaacgaatc ttttttcaag cgttccatcg tgccatgacc atcattatct cgatcaacat
     5221 atattaaacc atagcgtttc ttcatttcac cggttgtaaa tgaaacaata tcaatgattc
     5281 cccacggtgt ataaccgatt aaatctacac catcttgatc aactgcttct atcgctgctg
     5341 taatatgtgc ttttaaatat tcaatgcgat aatcatcatg aatatgtcca tctaccactt
     5401 catcaactgc accaaaacca ttttccacaa taaaaagtgg taactgataa cgatcatata
     5461 acacattcaa tgtatatctt aagccatctg gatcaatcgc ccaaccccaa tcactcgttg
     5521 cgatatgcgg attctccaca gaatgattca aaccaccgtt gacgatgttg ttttcaactg
     5581 tagtatcaac atcatgtttt acagccgtag acatgtaata actaaagcca atataatcaa
     5641 ccgtgccctg ctgtaaaata ctgtcgtccc cttcttgcca tccaacatca tatccttttc
     5701 gtgccaacat ttttttagca tagcttggat aataacctct cacttggaca tccgggaaaa
     5761 agaaacgtaa gcgattcgca atttgtgctt ccatcatatc tttcggatga cacgaatatg
     5821 gataaatggg tacatgtgaa atcattgttc caatcttaaa cttcggatta atctctttac
     5881 caagacgaac tgctaaagca ctggctaaaa gttcatgatg tgctacttga tacaagactt
     5941 cttcaggatt atcattttct gtcaatgcta ccccagaatt cgtccataaa aagataggat
     6001 ttgatgtgtc catctgatta ttaatttcat taaacgtcat ccaatatgta actttatctt
     6061 tatatctttc aaatacaaca cgcgcaaaat gcacaaaata atcgacaact tctctatttc
     6121 taaatccacc ataatgtttc gctaaatgaa gtggcatctc aaaatgtgat aacgtcacaa
     6181 caggttcaat accttgtgca attaattcat caaagatacg atcataaaag gcgagtcctt
     6241 cttcatttgg cacatcttca tccccattcg gaaagatacg tgtccacgca atcgacgtac
     6301 gtaaacattt caatcccatt tctttaaaca aggcaatatc ttccttataa cgatgataaa
     6361 aatcaatacc ttcatgattt ggataatagt gattgggatc tatagattct gtaatctgac
     6421 gtgctttgcc atgtgcacca ctcgtcataa catcaattac acttaaccct ttaccacctt
     6481 tatcatatcc accttcaaat tgatttgcgg caagagcgcc accccacatg aaattttgcg
     6541 gtaattttgt cattattaca acacactcct agtttttaaa tattttaaaa ataacatctt
     6601 cagtcgtaat gatttcattc attgtcagtt ctacttttcc taaatcggca gagttgctaa
     6661 taacgacaat aacgtcagca ttgtagcctt gttgttgtat atattgctgg tcgaattgca
     6721 acaacgtttg ccctgcttca acatgatcat tttgctttac aaagcacttg aaccctttac
     6781 cttccaagtc aactgtattc aagccaatat gaatgactat gtccacaccg tcttctgatt
     6841 gaataccaac tgcatgctta gttggtacaa tcatagatat taaaccattg aacggtgcga
     6901 ttactttgga ttcttcatga gctttgattg ctaagccttc acctaccatt ttctctctaa
     6961 aaattgaatc tcttacttct ttaagtaaaa tacgacgacc agcgattggt gctttcacta
     7021 aaattggtgt tgttactttt acttgaggtg tataacttgt atcttgacta ttaatattgt
     7081 cagtattctc actctcttcg acattagcat tcttaattaa tcgctgtaat tgctgataca
     7141 cttcatcgac atttccattt aattttatga ctaactgcgt atcattttct gctacagatg
     7201 tcacatcaac tatttgtttc acttcatttg ctgtagaagg aattgtatgt tgcatatgaa
     7261 ttgtaatgca cttcgtatca tacgttgcat caacaatgtt ttcgacacca cctacagctg
     7321 taagaatgtc ttgggcttgt tctttatatt tattgctcat aaatattacc ccctcaactt
     7381 gatagtagaa tgaaaatgta tttacttacc tccaattata attgtaccgg ttcaatttgt
     7441 aaacgccgat acaattataa tattttgtgc tataataatt acagacaaag tgaaacgagg
     7501 acagaatatt gttaaagtat gaacatattg ctaagcaact taatgcgttt atacatcaat
     7561 ctaatttcaa acccggtgat aaattgccaa gcgtgacgca attaaaagaa cgttatcaag
     7621 taagtaagag tactatcatt aaagcattag gcttattgga acaagatggt ttgatctatc
     7681 aagcacaagg cagtggtatt tatgtgagaa atattgctga tgccaatcgt atcaacgtct
     7741 ttaagactaa tggtttctct aaaagtttag gtgaacaccg aatgacaagt aaggtacttg
     7801 tttttaagga gattgcaacg ccacctaaat ctgtacaaga tgagctccaa ttaaatgcag
     7861 atgataccgt ctactattta gagcgattaa gattcgtgga cgatgatgtt ttatgtatcg
     7921 aatattctta ttatcataaa gaaatcgtga aatatttaaa tgatgatatt gctaagggct
     7981 ctatcttcga ctatttagaa tcaaacatga aacttcgtat tggtttttca gatattttct
     8041 ttaatgtaga tcaactcact tcaagtgaag cttcattact acaattgtct acaggtgaac
     8101 catgtttacg ttaccaccag actttttata caatgactgg caaacccttt gattcatctg
     8161 acatcgtatt tcattatcgt catgcacagt tttatattcc tagtaaaaag taataaatac
     8221 ataaaaacgt ctatatccca gttataaact ggagtataga cgttttttta cgataataac
     8281 aatggctcaa attgctatta tcttgcttag gtttttcgtt ttagaagaat attgctacaa
     8341 agacaggcac aactgctaca acaactacac caactaacac taaagctata cttgccattg
     8401 attcttctac aggtcctaat tctttggctg gtgctacacc taatgtgtga ccacttgttc
     8461 caagtgctaa tcctcgggca atagggttag taattcggaa aagctttaag aatttattac
     8521 ctagggcata aataatgaca ccatttaaaa taactgctaa tgatgttaat tcttttatac
     8581 caccgatacc agctgatact ggtaacgcaa tcgctgtagt tgctgcttga ggtaacattg
     8641 ataaaataac atcattggca aattgtgcta acttcgcaaa agttaaaata attaataacg
     8701 ctacaactgt accgatacca atacctccga tgatacgatg ccaatgttta acaagcactt
     8761 cacgcttttt atataacgga atcgcaaaac agattgttgc cggttctaag aagaagtaaa
     8821 taatgtctcc acctattttg taagtcttat acggaatgcc tgttaaatag aggaaggcca
     8881 caccaaatac catactgaca aatagcggtg cgaataagaa gaaacgatta gttttttcaa
     8941 ataatatggt cgctaagaaa aatggtataa cggataacag tattccgaag taaggtgtgt
     9001 ttagtgctaa gtggttaatc atgagcttgt gcctcctcta ttttgatctt ttttgtgact
     9061 ttgtcacctt tagatctcga agtaactttc ataataattt gtgtgacata gccagtacaa
     9121 ataagtaata gtattgttga gacgattatt agtccaatga ttaaaaatgg tgcttggcta
     9181 atgacaccta aagagttaac aactgagata ccggctggta cgaagagtaa gccaatgtta
     9241 tttgttagtg tcgttcctac tttttcgact tcgcctaact taacagcacc agtacataat
     9301 aatacaaata ataatactaa accgattact gatgcaggca taggaattgg cataaatgat
     9361 tcaattattt tcgatacaaa gagtactaaa gcaattacaa tgacttggtg aaaaaagtgt
     9421 gctggttttg atgcgtcttt ttgttgtttc acgaccattg cctcctacgt ttgatttaac
     9481 taaagtatag atggctcact tcgatttgcg tgatttttag tccgaaatac aaaatatcat
     9541 aggtaaaatg cataaaaaaa aggattactg ttaaagtaat cctatcgacg ctttaaaatc
     9601 tttcataaat gaacgtccaa cttgcatctt gacaccattt gtcaatatta ccatataagt
     9661 atagttaaac cattgttgca cttctttaat gtgtttcgtg ttaataatat atgaacgatg
     9721 aatacgtata aaataagtgg gattcaatcg tttttcataa cgattcaatg gctctgttgt
     9781 ttcgtattta tgattcgttg tatgtatggt tgtaatacca ttatgtgtgc caatcccaat
     9841 aatattttgt tgctttaaca tgtgaatttt atcgtcaatt tcaacaggta agctttgatc
     9901 aaaattcgcc gacatatcat tcgcaattgc acttgcgtta ttatcatctt tggctttagt
     9961 cgcacgcact ttattgactg cttgttcaat acgtttttga ccaaacggtt tcaaaatata
    10021 gtctgtcgca tttaattcaa atgcctgtac tgcgtattgg tcatgtgcag ttgcaaaaat
    10081 aatcgcaggt ggctctttca tcttttgaat cttagctcct aattcgatcc cattttcatc
    10141 cattaaattg acatctaaaa atataatgtc atattgattg atcagtagtg cttccaatgt
    10201 ttcttttaca ttttctgcct cattaatttc ttcaaaacca ccaatttcat ttaataaata
    10261 tgttaattca ttacgtgcta atggctcatc atctatgatt aatgctttca tatttattcc
    10321 tcctcttgtc tttcataagg aagtacacac caaaaagtgg taccgctcga tgtcgattca
    10381 aattgtaatg ctgcggattt tccaaataat ccttttaggc gtaagtttaa attttctaaa
    10441 gcactaccag ttccagactc tgattctaca gatgtttctc ccaacaaatg cattttatct
    10501 ttagaaatac cctgaccatt atcttgtaca ataatacgta catgtgttgc agtttcttta
    10561 atcactgaca cgtcaatatc gttaccttgc tttcgattcg taaacgcatg tttgatggca
    10621 ttttcaacta aaatttgaat taaaaatggt ggtacaagca catcgcgata tttgtcttca
    10681 acattaatat tgatattaaa tcttcctgga taacgtgctt gttcgagtga taagtatgca
    10741 cgcacttgac ttaactcttt atctaaagta atcgtatgtt gcttagagcc ttgtaaattc
    10801 gctctgaaaa aataactcaa ttctaatagt aactctcgtg ccttttcgct atttattcta
    10861 actaaagctg agatcgtgtt aattgaattg aagaaaaaat gtggactcac ttgtgcctgt
    10921 aatgacttaa tctcagcatc tttcaataac ttactttgcg tttcggcttc accaagttca
    10981 atttggctac taaaaatatt tgccaatcct tctgcaagtt gacgttccac aaaagttaaa
    11041 tcattagggt ttgtaaaata catcttcaat gtaccgacga tagaaccatg catctcaagt
    11101 ggtatcacga tagctgctct aagcgggcaa ttcggatgac tacaaccaat ctcttcttta
    11161 gtatgaactt ctttcaactt tcctgatttc aatacatctt tagacagact tgttaatatt
    11221 tcatttgttg gtatgtgatg atcactacct gcacctacat gcgataagat ttcatttttg
    11281 cttgtaattg ctacggcaga tactttcatt aaatttttaa taatcatcgc aatttgctgt
    11341 gccgattctc tattcaatcc ttctttaaaa tacggcaatg tctggttcat caattgcagt
    11401 acatcatgtg tttgaacagc cttcatttgc tcctcttgct ttaatgttga aatgataata
    11461 gacataaaaa tcgccgtacc aacgctatta acaataatca ttggtagtgc aattaatgat
    11521 atgaggtcaa ccgcatatgc tttgtcgtgg gaaaatgtta aaatgctcaa catttgaatc
    11581 atttccataa caattccaat catggcactt ttcgcaatac tcgggtaacg cttgcgtctt
    11641 tgagcttgta agccaaaata accagcaatt ataccaataa atatagatga gataagataa
    11701 acttgtgcat ccgccccacc catatacact ctgaaaatac ctgaaataac gccaacaaat
    11761 agacctacaa aagggccacc aactaatcct gcgacaccta tcgttaatac acgtgtgtta
    11821 gctaaagata catcatcatc taaacggaag tacacacttc ctgacaaact atgttgatga
    11881 tcgatgacga taccagttaa attagacatt aaggcaaaca aactgaaaat aatacataat
    11941 tgccaacgtg ctttccatgt acgtcgacga ttcattaagt ttttaaaata tggaatattc
    12001 atcaacacat aggccaaaat aataattaaa cctacacgct caagtaataa cattgttagc
    12061 gatagcacga tagcacctca gtgaattata attatgttta ttttatcata atagtgcatg
    12121 taaaattcat gaataaatta ttaaaaaaac acgctactat ttaattatct ataccattaa
    12181 attttcatat caatttttat gctaagttga ccatttttct tttcaaataa tgctgtttat
    12241 gtcactatta tgacttttat acatagcgaa aaactgctgg acttattttt gccaacagtt
    12301 tctaatcgcg ttatttatga tactttttta aataatacgt gattctctaa atgtacgtgt
    12361 tcatgtgtta acacttcaag tgcttttaat ctctgataaa caagtcgcca agtaccacac
    12421 gcttctatcg gaggttcata actagatgtt aattcgctca tttttactaa caattctccc
    12481 gttgcaatgt ggtctgaaac taaatcatct atcacagtat taatatcgtc tactacctca
    12541 ccttgctcat atttaatgag ttttggaaaa tcgacatcgt cttctttttg catatgctct
    12601 aacatgccat ttttaaatgt atcgtatgtt tcttttaact caactaaata tggatgatta
    12661 ggtccatgta ctttcgataa cttcgtcaca taaggtgtta aatttttaaa ttcttctctt
    12721 agaggttcat gatatgctga ttgaatatat tgaataagtg atgaaacatt taaaaattta
    12781 ggatttaacg aacctggtgt attcgtttgt tcaacgtcgt tgagacgctg taataattcg
    12841 ttcaaatcta catttttctt ttctaaggct gctgcttcta tacttacttg tccgccacaa
    12901 caaaaatcta ttcccacact tctaaaaata tccgctgctt tcggataatc agttactaca
    12961 tctgctacta tgtcattttt atttatcatt atagataacc tcctcatttc cagtgtatac
    13021 aatttaatgt atatgaaaat gaaaatcagg gaaatgtcat aatcatgtca taaacagcaa
    13081 aataaagccc tcaaatcatg ttggctcaca atgatttgag ggcatttatt atttatttag
    13141 tggataagtg atatgtgcag tgtttaactt aacaatattt ttgaagtctc gctttttaat
    13201 atctttgcta agtaagattt gcacttcgtt ttctgatgtt tggcttaaca ttcccatcac
    13261 catgtcgtct tttagtacga cactagccat accttcttca aatacataac cacgatccag
    13321 accagttaaa atgattttgt ttttaccttt taacttcaat gagattgaat ccgttaatgt
    13381 aatagctgta aagtataacg aaatgttatt aaagtctttt gtgaaatacg gtgttaatct
    13441 ataaaaatca ttattcaaat gaattaatgc acttgtttct gcagtatatg catatttatt
    13501 acgttgatta ccaacacgca cttcaaatac ttccgtacct atttggactt ctaagaaaac
    13561 atcccaaatt ttttctttag gtaaatacgc tttaatatct tctaacataa tgttaaaacg
    13621 atattgttta ttcgcattga cacttaaagg tacatacatt gtgtgcttct tgtttcgtga
    13681 atgtaattta agtctgacat cataatgtcc ttcgccaatc ataaattcat ttaacgttag
    13741 ctctgtaaca attttatgat tatcaaattt aaatgctgtc attttcactt ttggcttagc
    13801 gatatcaatg cctttaaagt atggttcgcc ttcattgaat tgaatgttta atttaccatc
    13861 tacaatatca aaacggtagt attgaccttg acggtaactt tcctccacag ttctatagtt
    13921 gtctatatct ttcgctctcg cgtagtgcaa caatggtcgt aatttactca tcaccaatgc
    13981 atctacacgt tctggaactg cttgtataaa gtctcctaga gcattaatcc attgtggttg
    14041 atcttctagt ttaactttaa gtgagaagcc attcgtacga gaaaaactaa aatgacgatt
    14101 taaaaattct gctaagattt gatttttatg ggcttcttct aaatctgcat ttaatatttc
    14161 tacagcaatc aatctcatga cttcataaaa gtcttcaggt gaaacatacg cactactcat
    14221 atgttcacct tcacgctttg tagcataata atacgcttta tcacttaaca cactgattcg
    14281 atttgcattt aaatatgctt tcattgtaaa taattgatct tctgcactct ttaattcttc
    14341 tggaaaataa atgtcattat cttttagtaa tgctgttcta tagattttag tcgggcttaa
    14401 agtatagata attcttgaat ttaacaaagt aacttcaggt gctgtttctt taaacataga
    14461 ttgtggtaca ccacgaccat taacaccttt cattttaatc aataagacat ctgagtgatg
    14521 ttcatcaata aatgctgctg catcctttaa agtctctttg tttatatagt catcggagtc
    14581 cacaaataat acaaattcac cttctgcttg ttttaacgcc acatttctag gtttacctgg
    14641 accaccagaa tttgtttcga gttgacttac tttcaagttc aatttattgc gatacttttc
    14701 aactatttgt aacgtttgat ctgttgaaca gtcatcaact acaaccactt caaattcagt
    14761 tttcggaaaa tcttgtttcg caaggctatt aagtaattct gttatatact tttctgaatt
    14821 gtatgttgga actattactg aaaatttcat cattatacct ctcccacttt gactactata
    14881 taaacttagc taccaaataa atttctgact aaacgctcac ttgatcggcc atcttgatat
    14941 ttaaaatgtt tatctaagaa tggaatgact ttttctcctt cataatcttc attgtccaag
    15001 gcgtccatta atgcgtcaaa tgattgcaca attttacctg gaacaaatga ttcatatggt
    15061 tcataaaaat cacgcgtcgt aatataatct tctaaatcaa atgcatagaa aatcattggc
    15121 tttttaaata ctgcatattc atatattaaa gatgaatagt cactaattaa taaatctgtt
    15181 atgaacagta tatcattaac ttctctaaag tcagaaacgt caacaaaata ttgtttatgt
    15241 ttgtctgcaa tattaagtct atttttcaca aatggatgca ttttaaataa tacaaccgcg
    15301 ttattttttt cgcaatatct tgctaaacgt tcaaaatcaa ttttgaaaaa tgggtaatgt
    15361 gctgtaccat gaccactacc tctaaatgtt ggtgcgaaaa gaatgacttt cttaccttta
    15421 ataattggta attcatcttc catctcttgt ttgatctgtg tcgcataagc ttcatcaaat
    15481 agtacatcag tacgtggaac acctgtaggc actacatttt tctctttaat accaaatgct
    15541 tcagcgtaga atggaatatc ggtttcagat gatacataag cttttgtata gctacgatga
    15601 tttaatgaat caataaatgg tccacccttt ttaccagtac gactaaagcc aactgtttta
    15661 aaggcaccaa cggcatgcca tacttgaata acttcttgag aacgtctaaa acgcactgta
    15721 taaatcaatg ggtgaaagtc atcaacaaag atgtagtctg ccttcccaag taaatatggc
    15781 aatctaaact tgtcgatgat gccacgtcta tctgtaatat tcgctttaaa aacagtgtga
    15841 atatcatact ttttatctaa attttgacgt aacatttcgt tatagatgta ttcaaagttt
    15901 ccagacatcg ttggtctaga gtctgatgtg aacaacaccg tattcccttt tttcaagtgg
    15961 aaaaatttcg tcgtattaaa tatcgcttta aaaataaatt gtcttgtatt aaatgattgt
    16021 ttgcggaaat acttacgtaa ttctttatat ttacgaacga tataaatact tttaacttcc
    16081 ggagtcgtta caacaacatc aaggacaaat tcattaacat cgctagaaat ttcaggtgta
    16141 acagtataaa ccgttttctt cgaaatgccg ccttttctaa attcttttag gtaagtctgc
    16201 aataagaaat tgattttacc attttgtgtt tctaattcgt tgtattcttc ttcttgttct
    16261 ggctttagat tttgatatgc atcattaatc acatctgggt ttaactgtgc aatataatca
    16321 agttcttgct cattcactaa taagtactta tcttcaggta agtaataacc attatctaag
    16381 atagctacat tgaaacgaca aacgaattga ttcccatcta ttttgacatc attcgccttc
    16441 attgtacgtg tctcagttaa atttcttaat acaaaattac tatcttctaa atctaggttt
    16501 tcactatgtc cttcaacgaa taactgaaca cgttcccaat agattttatc tatatatatc
    16561 ttacttttaa ccaacgttaa ttcatccttt tctatttaca taatccattt taatactgtt
    16621 ttaccccaag atgtagacag gtctgcttca aaagcttctg taagatcatt aattgttgca
    16681 atttcaaatt cttgaccttt taacaacgct aatttatcta caatatctgg gtattgaatg
    16741 tataagtcta caacatcttg gaaatctttt gaaccacttc gactactacc aatcaacgtt
    16801 agtccttttt ccaatactag acgtgtatta acttctactg ggaactcact tacacctaac
    16861 agtgcaatgc ttccttctgg tgaaatgtaa tcgatcattt gatttatggc tgattgacta
    16921 ccgcgaccac ccacacactc aaatgcatga tcaaatgtta agccttcagg tattttatta
    16981 ataaagaaga catcatcaac aaatgagaag tgactcaatt tataatctgt tttaccaaag
    17041 acatatattt tagactctgg atataattta cgtaataaaa tggctgtaat gtaacctaag
    17101 ttaccatcac cccaaatacc aaatgtattt ttatttgaaa tagatttctt ttcaaaacga
    17161 cgaatagcat gcaaacttac tgttacaagc tctgtatatg aaataatact taaatcaata
    17221 tcatcaggta gtggtacagc tctatcatga tttagcaaca caaaatcttg cataaaccca
    17281 tcatgtccac ttgatctgaa gtagctcgat tttaaatagt tttcagcaat gacatcgtct
    17341 ttttctgtcg gcgtattcgg taccataact acttttgtac ctttattaaa cacaccttta
    17401 ctgtcaaata cgacctcacc aacaccttca tgaattaaag acattggcaa tttctgagat
    17461 aagacattct catcacggct accagtataa tatctttgat cggcagcaca aattgacata
    17521 tataaaggac gtacaatgac atagtcactg taaatatcta cgttgttata cgtaacttca
    17581 aattgtctag gtgcaactaa ttgatatact tgattaatca tcggcaatac cacctcgaat
    17641 aatagcattc gctactttta aatcgtaagg tgttgttact ttaatgttat ataactcacc
    17701 ttttacaagt cgaaccggtt tgtttgtttc tacaataatc ttacaagcat cagataaaat
    17761 actcttttgc tcatcactca actgtgcata gctttctttt aataaattaa tattaaacga
    17821 ttgaggtgtt tgaccttggt acatttcatt acgcactgga attgcatcaa tcgtttgatt
    17881 atctttagat gtaacaatcg tatctatagc atcaatcact gtatctactg caccgtactc
    17941 taaagcagct tgaatatttt ctttaataat acgatgcgtt aaaaatggtc taactgcatc
    18001 atgtgtcaca atgacatcgt catcgttaat accatttgtt gattcaatat gtttaacgat
    18061 attcataatt gtatcgttac gatcgctacc accttgaatg acttcaattc tttcatcaga
    18121 aattttgaat tttctaagtg tatctttcgt atgcgtcatc cattgttgtg gcgtcgcgat
    18181 aataattttt tcaaaatcat taattaaaat aaatttttct aatgtatgga ttaaaatcgg
    18241 tttgttgtct aaatctaaaa attgtttagg taaaggtacg ttacccattc ttgagcctat
    18301 acctccagct agaataccag cgtatttcat aaaatacttc ctccattcaa ctatatctat
    18361 atttaattat ttaaatttcg ttgcattttc caattgaaaa ctcattttaa aatcaaaact
    18421 ctaaatgtct gtgtattact taaaattata catattttgc ttatatttta gcatattttg
    18481 tttaaaccta tattacatta tatcagacgt tttcatacac aaataataac atacaagcaa
    18541 acatttcgtt tattatttat atcacttaac taattaattt ataatttttt attgttttta
    18601 agttatcact taaaaatcgt ttggcaaatt cgttgtgacg cttgtccatc ttctaatgaa
    18661 cagaattttt gataaaatac cgttcgtgct tcaatatact catttgcagt ctcatcgatt
    18721 tgttttaatg catcaatgag tgctgtttga ttttcaacaa ttggacctgg caactctttt
    18781 ttataatcca tgtaaaaacc tctaagctca tcgccatatt tatctaagtc atatgcatag
    18841 aaaatttgcg gacgctttaa tacaccgaag tcgaacatga cagatgagta gtcggtaact
    18901 aacgcatcgc tgattaagta taaatccgaa atgtcttcat aatctgaaac gtctttcaca
    18961 aaatcatcat gttcatcaat acgtgtcaca actaaataat gcatgcgtaa taaaataaca
    19021 taatcatcat ccagcgcttg acgcaaagct tctatatcaa agttaacatt aaattgatat
    19081 gaaccttctc gaatcgcttc atcgtcacgc caagttggcg cgtacataat cactttttta
    19141 tctaatggaa tatttaatct tgtcttaata ccattaatat attcagtatc attgcgttta
    19201 tgtgataatt tatcatttct tggataacct gtttccaaaa tcttatctcg actaacatga
    19261 aatgcatttt gaaatatcga tgtcgaatat ggattaggtg acactagata atcccaccgt
    19321 tggctttctt ttttaaagcc atcttggtaa ttttgagtat ttgttcctag cattttaacg
    19381 ttactaatat ccaaaccaat cttttttaat ggcgtgccat gccatgtttg taagtacgtc
    19441 gttcgcggtg atttatataa ccaatctggt gtacgtgtgt taatcatcca cgctttcgct
    19501 cttggcatcg ctaaaaacca tttcattgaa aactttgtaa catatggtac attgtgctgt
    19561 tggaatatgt gttcatatcc ttttttcaca ccccatatta attgggcatc gctatgttca
    19621 gttaagtatt catataatgc tttggggttg tcgctgtatt gtttaccatg aaagctttca
    19681 aaataaatta gattcttgtt tggcaatttt gatagtaatt taaaagtcgt atatatacta
    19741 tgttctatca attttttaat tgtattttta atcatgtcgt acctccgacg tgtttttgta
    19801 attatattaa tatgtatgag caagctcatt gtaaccatgc ctattatagc atttcatcat
    19861 aaaatacatt taaccattac acttgtcgtt aattatcata cgaaatacat gattaatgta
    19921 ccactttaac ataacaaaaa atcgttatcc attcataacg tatgtgttta cacatttatg
    19981 aattagataa cgattggatc gattatttta ttttacaaaa tgacaattca gttggaaggt
    20041 gattgctttt gattgaatcg ccttatgcat gaaaaatcaa aaggttattc tcattgtata
    20101 gtcctgcttc tcatcatgac atgttgctca cttcattgtc agaacccttc ttgaaaacta
    20161 tgccttatga ctcatttgca tggcaagtaa tatatgccaa cattagcgtc taaacaaatc
    20221 tttgactaaa cgttcacttg agcgaccatc ttgatattta aaatgtttat ctaagaatgg
    20281 cacaactttt tcaacctcat aatcttcatt gtccaaagca tccattaatg catcaaagga
    20341 ctgtacaatt ttacctggaa caaatgattc aaatggttca tagaaatcac gcgtcgtaat
    20401 gtaatcttct aagtcaaatg catagaaaat catcggcttt ttaaatactg catattcata
    20461 tattaaagat gaataatcac taatcaacaa gtctgtaaca aagagaatat cgttaacttc
    20521 acgatgatct gacacatcga taaagtattg tctatgttca cgtgaaatat taagtctatt
    20581 ttttacgaac ggatgcattt tgaataacac aactgcatta tgcttctcgc agtatcttgc
    20641 taaacgttca aaatcaattt taaaaaatgg ataatgtgcc gtaccgtgac cattacctct
    20701 aaatgtcggt gcgaatagaa taactttctt accttttata attggcaatt catcttccat
    20761 ctcttgttta atttgtgttg cataagcttc atcaaatagt acatcagtac gtggtacacc
    20821 tgttggtaca acattttctt ctctaattcc aaatgcttca gcataaaatg gaatatcggt
    20881 ttctgatgaa acatatgctt tcgtgtaact acgatggttt aatgaatcga taaacggacc
    20941 acctttttta cctgtacgac taaagccaac tgttttaaag gcaccaacag catgccacac
    21001 ttgaataatt tcttgtgatg gtctaaagcg aaccgtataa attaatggat ggaaatcatc
    21061 aacaaaaata taatcggcct taccaagtaa atatggcaat ctaaacttgt ctctccattt
    21121 gcgtctatcc gtaatattct ccttaaatac cgttttaata tcataatcaa aatctacttt
    21181 ttggcgtagt aactcatcat atacatactt gaaattccct gataaattcg gacgcgaatc
    21241 tgatgtgaat aatattgttt tgcttctttt aatatgtagt aactttgtaa tattaaaaat
    21301 agctttaaat aagaaacttc tactttcaaa tgaagcttta tgaccttgtt tatgaagcca
    21361 gtgtgcactt gtcgcaatga cccctgattt ctcttgaggt aaggtgattt caatatcaaa
    21421 tacaaattcg ttaacgtcac ttgctatttc cggagtaatg gtatagaccg tatgttgtga
    21481 tacgccacct ttacggaaaa ctttagcatc atacgctaat aaatagttca cttttccatt
    21541 ttgtgtagtc agctcattgt attcttcaat ttgctcttca tttaatgccg cataagcttg
    21601 atcaataata tttggattaa gttgtccaat atactctaac tggtcatgat aaacaaataa
    21661 atatttatcc attggtaaat aatacccatc gtctaatatt gcgacgttga atctacatat
    21721 aaatgtatta ccgtctattt tcatttcatt tgcttctaat gtttttgttt cggttaaatt
    21781 cctcagaaca aattgtcctg atgttaaatc gacaccttca ctatgtcctt caatatataa
    21841 ctgaacacgt tcccagtata tgttatcaat atgtattgct tgtttcgttt ttgtcattgt
    21901 tattccccca tcggtttatt aaatcgtcca tttcaatact gtttttcccc aagatgtcga
    21961 taaatccatt tcaaacgctt ggacgatatc ttgcatcgta catacattaa tttcatgtcc
    22021 ttttaataat gctaactttt caactatgtc tgggtactta cgatataaat caacaacttg
    22081 ctcaaaatct ttagagccgc ttcgactact accaatcaac gttaatcctt tttcaagtac
    22141 taatcgtgta ttcacttcca cgggtaattc acttacgcct aacaaagcaa tactgccttc
    22201 tggtgaaata tgttcaacta tttgttgaag tgcaacttga cttcctttac ctccaacaca
    22261 ttcaaatgca tgatcaattt taagatcatc tggtatttga tttactgtaa agatgtcatc
    22321 tacaaatgaa aaatgactta atttatagtc tgtcttacca aatacataag ttttagcttc
    22381 tgggtacaac ttacgtagca aaatagcagt aatataacct aagttaccat caccccaaat
    22441 accaaagctg gttttcaaag gtatagattt acgttcaaat cgttgtatag catgataact
    22501 tactgacact aactctgtgt atgaaatcgt actcaaatca atgtcattag gcagcggaac
    22561 gatacgatca tgtgccatca caacgtagtc ttgcataaaa ccatcataac cactagatct
    22621 aaaataacta gaggctaagt aattctccgc aataatatga tgttgctctg taggtgtatt
    22681 cggtaccatt actactttcg tacctttttc aaatacccct ttactatcaa atacaacttc
    22741 accaacagct tcatgaacta atgacattgg taattttttg cgtagtacat tttcatctct
    22801 tcgacctgtg taataccttt gatcagctgc acaaatagac aagtataaag gtcttacgat
    22861 gacatgatta ccataaatat caacattatt atatgtgacg tcgaactgtc tcggtgcaac
    22921 gagttgatat acttgattaa tcatcggcaa tatcaccttg aataatggca tttgctactt
    22981 ttaaatcata cggtgttgtc actttaatgt tgtatagttc tccacgtacc aatttaactg
    23041 catgtccaga ttcgacaatg attttacatg catctgataa gatttctttt tgttcactac
    23101 ttaaggcgcg ataactatct tgtaataatt taatattaaa tgattgtggt gtttggcctt
    23161 gatacatttc attccttaca gggatactgt gtatgttctg tttatcttta gacattacaa
    23221 tcgtatcaat tgcttcaatg actgtatcta ctgcaccata ttttgctgct acttcaatgt
    23281 tctctttaat aatacgttga gttaaaaatg gtcttacggc atcatgagtt acaatcacat
    23341 catcattatt aattccattt acattgcgaa tatggtcgat aatgttcata attgtttcat
    23401 ttcgatccgt accacctgca actactttga cacgttgatc tgtaatgtta tattttttta
    23461 aaatatcctg tgtatgggaa atccactgtg ctggcgttgc gataataatc tcattaaatt
    23521 cactcactaa aatgaacttc tcaattgtat ggattaaaat cggtttatta tcaatatcta
    23581 aaaattgttt tggtaatggc acgttcccca ttctcgaacc aatacctcct gctaaaatac
    23641 ctgcataaat catgttgtcc tccattctgt cattacatca tttccattta tacattactg
    23701 acctatgccc gcacataagc ctaacctatt gctcacttgc ctcttttatt aatccaaaga
    23761 tagttgtcac aatagtgtga taatttttta taaaaatgta tttttgtaac tgaccattct
    23821 aagttgtttt gccatgcagt taatcattaa ctctgacgat attaaattgt taaaggtatt
    23881 aatgtttact ctttttcaaa ttcattatta ctgccatcat tttaccatat attataataa
    23941 atttatctta ttaagtggct gtacttgatt ttcactttaa aaattatcaa atattgccat
    24001 ctcattttaa gtatacaaaa tgcaaaacaa ccgattcaca agcatatttc acacaagtaa
    24061 accggctatt tatcaacgta tattcgaaga tgaattattt cgatagtatc tatagaccag
    24121 acggcattcg cactttcata gctataacta taccagcgtt ttcgtcctca aaggtgcata
    24181 ctaataaatc gtaaacatga ctttatcaaa tcgttctttc ttgttaacta atttatcaaa
    24241 tgtctccggg cctttttcta acggtaaaaa atgagaaata ataggcttta cattaatatc
    24301 tttcgtcttc atataatgta aggttgccgt ccactctttg cccggaaaat tactggacaa
    24361 acagttccaa gagccacata ctgtcaactc gttacgcaga attttttcaa aatgaacgcg
    24421 atcaatctca atatcatcat atggtattcc gagtaatacc acctcgccac cttttttagg
    24481 tagcgtcaat atttgaccaa tcgtaacttt agcacctgat gattctatag ctaaatcgat
    24541 ttgattggcg taatgatttt cgatgaattt ctcaagattt tcttcttttg aattgattgt
    24601 ttgatgtgcg cccaatgatg ttgcaatatc tagtttatgc gcatctatat ctatagcgat
    24661 gatatgtgca gcaccaaata ttcgtgccca ttgaatagct aacaaaccta tactgccaca
    24721 ccccattact gcaacagtca taccaggttg tatattcgat ttataaaacc catgcgcaac
    24781 aacggctgat ggctcaacca ttgctgcttc aatgtaatca acattgtctg gaacctttaa
    24841 aacattttgc gctggcaatt tgacatattc cgcgaacgat ccaggttcat atgagccaat
    24901 gacgaataac ttttcacatc gtgcatattc accttttaaa caatactcgc attgataaca
    24961 aggtattgct gggcaacctg tcactttgtc gcccacatta acatgcgtaa catcacttcc
    25021 aatggcatct actacacctg aaaattcatg accaaatggc atacctttaa tgtatggccc
    25081 catttttttg tatcgtgacg tgtctgaacc acatatgcca gtcgctcgta ctttaataat
    25141 aacgtcattc gcactttcaa tgactggctt ttcattatcc tcataccgta aatcttccac
    25201 gccatataat ttcaatgctt tcacttgtaa atcacctcaa atttgattta attcacaact
    25261 tttttctttt taaaaatacc tgtcgcaaaa taacctgcaa tgacaatgga attacttacg
    25321 agtaaatgtt ccatataaaa atcagtgatt tgtcttaatg gcccaagcat aaaagttagc
    25381 attgattcta ccatattaat tctctccttc attttcatct aaatcgagcg gcttaagtaa
    25441 tactttaata ccttcgccgg attttaaatg ttgatacgcc tcgtcccatt tcgaaatatc
    25501 atatattttt gtcaccaaag cttcagcatt tactaaacca tccgccataa gttgcaatga
    25561 aggttcccaa tctgctggct tttgacttct actaccaaca actgttattt ctttttgaat
    25621 cactttttcc atatcaaatg gaatttcagc atccttaaaa atacctattt gactgtagaa
    25681 accttttttg cgtaaaatat ccaaaccttg tcgtgctgct ggaactgcac ctgaacattc
    25741 aacaacaaca tctgcaccgt aaccgtctgt aattccattg atatacgttt ttaagtctgt
    25801 ttgttgtaaa ttgactacat aatccatgtg caatgcttct gctttatcta atctgacttt
    25861 gtcattgtcc aatccagtta ccacaacagt tgcgccttta ctttttaaca cttgtgctac
    25921 aagtaatccg attggcccag gtcccattac aactgctaca tcgcctgaat tgacttgaat
    25981 cttagaaacg ccatgatatg cacatgctaa tggttctgtc atagctgcag actgatacga
    26041 tacttcgtct ggaatatgat gcaaactttc ttcacgtgca atgacataat tagtaaatgc
    26101 gccatcaact tgtgttccaa taccttttcg atggttgcat aaattatagt cttttgattt
    26161 acagtattca cactcattac aaacatagaa tgtcgtttca gatgtgacac ggtcaccaac
    26221 tttaaaatct ttaacgtctg ctccaacttc aacgatttca ccagaaaatt catgacctaa
    26281 tgtcactgga aaattaactt tataatgacc ttcataagta tgaatatctg tgccacaaat
    26341 tcctgcataa tgtactttaa tctttacttt atcatctagc ggtgttgcaa cttctttatc
    26401 aagaagttct aagttgccat gtccttctct tgtttttact aaagctttca ccacaaacac
    26461 ctcgattttt aattgaatag actaaatagt ttaaagataa gatagttaac gatattacca
    26521 ccttgatcaa tacttgaaat ttcagatgaa ccttttggca tttgtacatt cgtacctttc
    26581 gccatatctg tgaaaatggg tgctacgtct gttgcaatat atagtgaaat tgcaatcata
    26641 atcgtaccca caatgacaga atgaataatg tttcctcttg ctgcaccaac aataaacgcg
    26701 acaacaaatg gtatcgttgc taagtcacca aaaggtagta cttggtttcc tggtaaaata
    26761 acggctaata aaacagtgat aggtactaaa attaatgctg tcgaaataac tgctggatga
    26821 cctaatgcta cagccgcatc caatccaata taaatttcac gttcgccaaa acgtttattt
    26881 agccatgttc ttgcagactc tgaaactggc attaaacctt ccattaagat ttttaccatt
    26941 ctaggcatta ataccattac tgcagccatt gacattccta aattaatgat gtctccaggt
    27001 ttgtaacctg ctaacacacc aatacctaaa cctaaaatca agccgacaaa tatagactct
    27061 ccaaatgcgc caaaacgttt ttgaattgtt tcaggatcag catctaactt attcagaccg
    27121 ggtacttttt gtaacaattt aactaagtaa atacctggtg cataagaaat tgtacttcct
    27181 gtagcaatcg atacacctgg taaatcaaag aactcactca tcatcggtgc tgtccaatct
    27241 gctactttca aacagataat ttggaaaata actgctgcta ataacgcttg ccaaatactg
    27301 cctgatacgg cataaaccat tgctgctgta aacgtataat gccaaaaatt ccaaatatct
    27361 acattcatcg tctttgtcac tttagttact agcaatacaa cgttaactat gattccgagt
    27421 ggaataataa atgctgcgac agatgatgcc caagcgatag atgatgttgc tggccaacct
    27481 acatcaatca cattcagact gacgcctaaa tttttaacca tcgcttgtgc tgctggccct
    27541 aaatttttaa ctaataaatc gatgactaag aaaatcccta caaaagccac acctattgtt
    27601 aaaccagacc taaatgccgc tccaattttc tgcctaaaga ataggccaag caagaatatg
    27661 acaaccggta aaataacagt tgcacctaaa tctaaaaatc cccttacaaa atcagtgaag
    27721 taactcatat ttaaaccctc cctgttatat atgcattgtc acgatacttt ccgattgtga
    27781 ttacatttga cgttacagtc atttcaacga caacccttgc taaattcgac tgcagtcctt
    27841 ttgaattaca gtcactgcgt ttctatgtca tcaacaatca tttgtcgtga tagtcattta
    27901 tatgcaattt gcatatatta atatgttatc gacccacgtt acatatcaat tccgttattt
    27961 ttgtaactct gttaagattt gttgttttgt ttcttcaata ccaataccag ttaagaaatt
    28021 acgtgcgttg ataactggga atttatattc tttttttgtc attgcagttg taactaataa
    28081 atctgcagtg tcttcataag gtccaacttc tgtaattttg atttgtttaa tatctacttt
    28141 aatattgtgt tcctttgcca tttcttcaat tgcattattt actactgttg acgttgcaat
    28201 acctgcacca cacgctacta atacttgttt cattttcaat tcctccaatt aatttttagt
    28261 tatattccaa ataatcattg attagtgttg ctaaaattgt ttcatctttc gttcgtagaa
    28321 tctgctccaa tttttcttca ctttgaaaaa tttgcatcaa ctgttgtaac agcttaagtt
    28381 gatcatctac tttatccatt gctaacataa aaacgatttt cacttctgtc tgttgatcaa
    28441 gtgttcccat ttcaataaac ggcacttctt tttctagaac agccacacct atcgttctat
    28501 ggttaatatg ttcgacatct gtatgcggta tagcgaccga acatagatgc gttggtaaac
    28561 cagtagcaaa ttctttttct ctgtcgatga ctgcatcttt aaacgttgac ttcacgaacc
    28621 cattttgaaa taacacatct gacatttgtg acaatacgga ttctttatca gttgccgaca
    28681 aattgagcat tatattttct ttatgcacta attgctgtcc catccatttt ccctcgcttc
    28741 tttatttgaa taatttttta aaatctcatt tacatcagaa tttttgcgac tttgtatgat
    28801 gcgcttaatt gcgtcattgt cttgcgccac atctctcaat tgtagtaacg ctcttaagtg
    28861 tgtcacttta tcaacagcag caataggtac aataatatgg attgctgtgc catctgacat
    28921 gtatattggt tcttgtaata tcaacatact catcgctgtt ttatgtacat gcttttcaga
    28981 gtatgcatgt ggaatagcaa tattttgcat gataaccata tacgaatcat caaatacctg
    29041 ttgcatctca tgaatatatt taatatcaat aaaatgatta gcaactaaca catcacttgc
    29101 tttagcaata gcttcatcaa tattttcaac atgatgcatt cttttcacgt gccttgccgg
    29161 tatcaagtca gctaaatcta atgtcttatt ttgtgtgaca atcgatccat taatggttga
    29221 aattgaatta taattggcaa taaaatcttc taaaccatca cgtagttctg taatgtcatt
    29281 aactgtcgtt gtgcgttcaa ttaatgccat taacttgttt atttccttat caatgtcagc
    29341 cgattcctta ttaatgtact tcatcacttc tttacgtaac tttcgttgct cattttcaga
    29401 taaagctact tttgtgataa ataatttttt atgtgttagg acaaacattg gtgaaaagac
    29461 gatgtcataa tctaatgtgt aattttcaaa tgttctaagt gaaatcgcat ctaagaaaat
    29521 aatttctgga aataagtttc gcaactcgta taacatcatt tgtgatactg acgtgccttg
    29581 tgtacacacg ataatagctt ttatcttgcc atcgaagttt tcatcttgac gtctcaaact
    29641 acctccgaac aacatggtta aatatgctat ttcattatca ggcaacgatt ttccgaaata
    29701 ttcagttaac gattgacatg attgtttcac catatgaaat aaggattgat aatttccttg
    29761 taaaggattt attaattcat cacgatccgt taagttatat ttaatcctat aaaaagcagg
    29821 cgttaaatgt aacaagagtt gctgtgataa tttctcctta tcttcaatgt taataaaagt
    29881 gatttgttca aaatggtgaa tcatttgagc gatggccatc gttaaattcg atatgctatc
    29941 tgattcttgc aaatcagtcc attgcacact tgttgaaagt aagtgtaatg tcaaatataa
    30001 cttttccgct tctggcaaat ccggctcatg ttgcgtcata atctccgttg cttgatattc
    30061 tttcgtatcc ctcaaatact gataattaat atttaatgga ttcatcacat gaccactttg
    30121 aattcgtcta cgaatcacac aaaggacata aggcaatgaa ctaagtgatt tgtctataaa
    30181 gcgactcttc aaaaattgtt ctacctgttt gatcttgtct ttttgatatg cgatatcttc
    30241 gaatgttaag ttgagcgcct ttaaaacttc acttttagta atatcatgat tcaacctttg
    30301 atcaatcaac ttaatgaaga aacggcgaac ttcaaattca tcaccaacaa tttcataacc
    30361 atgttttcga gaatacttaa gtgacaaacc atgattttcc aattgctctt tcacatgatt
    30421 tatatcgtga atgacagtat ttttactgac ttgtaaatca attgaaaaat ggtttagaga
    30481 cattgcgttt tccttactaa aaagcatgag cattaaataa taacgacgtg tttctatgct
    30541 aaaaatgaca ttgttgccgt ttaacatttg ctgctccgat acatctcgct tgaataacgt
    30601 catgatttca gaacttacaa taaaatttcc ttggcttgtt ctttcaagtt ttggataacc
    30661 ctcttgttca agccacaaat tgattttttg aatgcgatat cctagttgtc tacgagacaa
    30721 accaaatatc gattcaagtt ctttaccatg aatagtagga ttcaatacaa tttctctgag
    30781 tatttgctga ttatccccgt tcatgttcga ttctcctttg agcatctgag ctcaatttat
    30841 catcaatcgt cacaccgatg tacacacttt gaacacatat tttcaaaatg agcatgtaca
    30901 tcattgtgat gttttaacaa catttcaatt atatctatat tttttgtgat tttaatcttt
    30961 taaaataaag caattgaaat ttttgcatat atttttgtgt tttgtgtttt tttgaagcat
    31021 ttttaacata catatctcaa tcattatcaa attgtcatga ccattgtaac ccaatacaaa
    31081 aaccctaagg acgcttatat caggcgcctt agggttaact gtatctattt aattaagtat
    31141 tattattcgt atgtacgtaa cttatggtct atcaagttcc acacttcttc aacatcaact
    31201 gctgtagcaa aataagcatt ggcaggctta cctgtaacat gatttaaatc gacagccata
    31261 gtgccataag ttagtggact ttgatgttca atgtcgatat taacgggtac cattgtaaac
    31321 aattctggtt gtaacaaata caaaattgta caagcatcat gtattggacc accatccata
    31381 ttaaagtgag tcttgtatgt cttcttaaag aattgcaata attctacgac gaactgtgca
    31441 acaggattat tgatactttc aaagcgttca atcacgtgat cgtcggctaa aacttgatgt
    31501 gttacatcta aaccaaacac atttatagta atcccacttt caaaaacacg cttcgctgct
    31561 tcagcatcta cccaaatatt gaattctgct gtaggcgtcc aatttccaaa tgtaccacca
    31621 cccatcaaag taatagattc aatatgctca gcgattcttg gctcacgaat caatgccgtt
    31681 gctacattcg taagaggacc tgtcgctaca attgttacag gtgtatcact cgtcatcact
    31741 ttgtttataa tcacatctga tgctggcatt gcaactgctt gacgtgatgg tgtcgacggt
    31801 agtttcggac catctaatcc agattcccca tgtatttcag aagcaaaggc agctggttta
    31861 attaacggcc tatccgcacc tttcgctact gctatatctt ggcgtcccat aatatccaat
    31921 acgttcaagg cgtttgtcgt attcttgtca actgattgat tacctgcgac tgttgttaca
    31981 gctaatatct ctagtggact gtcaattgcc cccgctaaaa ttaatgctat tgcatcatcg
    32041 tgtcctggat cacaatccat aataatcttt cttttcattt atatatccac ctttcttaag
    32101 ttgttatcga tagcttatgt atatttattt atgtggtgaa tcatgtttat tttgaaaaat
    32161 agttttaact ttctcatatt tttggataca aacactattt atctatttta tggcttataa
    32221 atttatccga tatgccttat caacctacct cgctaaaaat aggatgtcta catatctata
    32281 ccgacttttg tcaactcatt ttcacaacaa tataaacagc aatttatatg attgttacat
    32341 gattcaaaca atttttatga aaaatatttt catacacaga atatatattg atattaaatt
    32401 tctcaaaagc tatattgaga ataattagga gggatgttga tgaaatcttt atttgaaaaa
    32461 gcacagcagt tcggcaagtc ctttatgtta cctatcgcaa tcttaccagc tgcaggtcta
    32521 ttgttgggta tcggtggtgc attaagtaat ccaaacaccg ttaaagcata ccctatttta
    32581 gatattacct tattacaaaa tatttttaca ttaatgtcag ctgcaggtag tattgttttc
    32641 caaaatttac cggtcatctt tgcaattggt gtcgcaatcg gattatctag aagcgataaa
    32701 ggtactgcag gtttagctgc gctgctcggt ttcttaatta tgaacgcaac tatgaatggc
    32761 ttattaacta tcacgggcac attggcaaaa gatcagcttg cacaaaatgg acaaggcatg
    32821 gtgctcggta tacaaacggt tgaaaccggt gtttttggcg ggattatcac aggtattatg
    32881 accgcaatac ttcacaacaa atatcacaaa gtggtattac caccgtattt aggtttcttt
    32941 ggtggctcta gatttgtccc tattgtcaca gcatttgccg caatcttttt aggtgtattg
    33001 atgtttttca tttggccaag catacaagcc ggcatttatc atgttggtgg atttgtaacg
    33061 aaaacaggtg ccatcggtac ttttgtttat ggcttcatct taagattgtt aggtccactc
    33121 ggtttacacc atatttttta cttaccgttt tggcagacgg cacttggtgg tactttagaa
    33181 gtcaaagggc acttagttca aggtacgcag aacatcttct ttgctcaact tggtgatcca
    33241 gatgtgacga agtattattc aggtgtgtca cgctttatgt caggccgttt tattacgatg
    33301 atgttcggct tatgtggtgc cgcacttgca atttatcaca cagctaaacc tgaacataaa
    33361 aaagttgtcg gcggtttaat gttatccgct gcactcactt catttttaac aggtattacc
    33421 gaacctttag agtttagttt cttgtttgtc gcacctattc tttatgtaat ccatgccttc
    33481 tttgatggat tagcatttat gatggcagac attttcaaca ttacaattgg tcaaaccttc
    33541 agtggaggct ttatcgattt cttactcttt ggtgtgctac aaggtaatag taaaacaaac
    33601 tacctatacg tcatacctat tggaattgtg tggttctgtt tgtattacat cgttttcaga
    33661 ttcttaatta cgaaatttaa tttcaaaaca cctggtcgag aagataaagc tgcagcacaa
    33721 caagttgagg ctactgaaag agcacaaact attgttgctg gtttgggagg caaagataac
    33781 attgaaatcg ttgactgttg tgcaacgaga ctacgcgtca cacttcatca aaatgacaaa
    33841 gtcgataaag tattactcga aagtactggt gccaaaggtg taatccagca aggcactggt
    33901 gtgcaagtaa tttatgggcc tcacgttaca gttatcaaaa atgaaattga agaattgctc
    33961 ggggattaag actaaccgaa atatcaacag aactaatggc aacgatgtac gaagtaagaa
    34021 gtgacatcgt tgcttttatt tttaatgtta catttgaagc attaagttca tcatgcactg
    34081 tagtgagccc gcaaatcgcc tctgctagac aatcatctta atgctatgat taaagcttaa
    34141 gtgccagatt tgaatttaat ttcaacaacg actttcacta cattaaaaat agggctactc
    34201 gacacatata gttgtatcaa atagcccttt atacaatttt ttgggtaagg ttttacaatt
    34261 tttgggatgg tatagatttt ataaaaagtt atttaagttc ttctgcttca gccataatat
    34321 cttttaatgt tttagctgaa tgtgcgaact tgctttgttc ttcgtcgttt aatgggattt
    34381 ctacgacgtt gcgaataccg tttctattga tgactgctgg aacaccaata taaacatctt
    34441 cttcctcata ttcgccttct aataatgctg atacagtcaa tacggcatct tcatttctga
    34501 aaatcgcttc agtaattcta gctaatccca ttgcaacacc ataataagtg gcacctttag
    34561 cttgaataat gtcatatgct gcatcacgtg tttgaacaaa aatttgttca atttgcgctt
    34621 tgccctcagg acgttgttca agtaatgtct tcaaaggttg acccgcaata ttagcgtgtg
    34681 accatactgg taattcagtg tcaccatgtt caccaataat ttgagcatcg acgctacgtg
    34741 gcgcaacatc gaacgcttcg cttaacaata atctaaagcg tgcagagtct aaaattgtac
    34801 cagaacctat aacacgttct ttaggtaaac cagagaattt ccatgttgca tacgctaaaa
    34861 tatcaacagg atttgtagct accaagaaaa taccatcaaa ttttgatgcc attacttcac
    34921 caacaattga tttgaatatt ttcaagtttt tagatactaa atctaaacgt gtttctccag
    34981 gtttttgtgc agcaccagca cagatgacaa ctagatccgc atcatgacaa tcactgtatt
    35041 cgccagcttt cacacgaact gttgttggag aatatggtgt ggcatgtttt aaatccataa
    35101 catctcctcg aactttttca gtgtctaaat caatgatgac taattcatca acaatgcttt
    35161 ggttcactaa tgaaaatgcg tagcttgaac ctactgcacc attacctatt aatacaactt
    35221 tgttcccttt aaatttgttc attacaaaaa ctcccttatg attaattcac taacatacat
    35281 gtagcttcaa atatgttagt ttaatgctgc ttattgacga tacaaaagca aataaacatc
    35341 tcttttattt tcaacgcata acttaaaagg tcatgtgtca tccgctttta agtttgtgat
    35401 ttatttcaca tataaaatgt aacatgcatt aagtactggg tcaatattaa attgtgattt
    35461 atttcacatt ttattttaat ttttacacct ttttaatttg tatacgatta catcttagat
    35521 gtctttagtc ttcgtacttc gccagtgatt atttacactt tcacattttt attatcatgt
    35581 ttactttttt ctaggaaaac aacaatgttt tttgaattag tcaaataaat gcgctcaatc
    35641 gtcggtgtgc aaacagacaa ttgtacacaa tgcttattga taagtattta aaaaattaaa
    35701 aatgtcatac aattatcaaa tttgccattt tatttatatt ttctcaaacc aattaattga
    35761 atatcgaaat ttttagtaga ataatcaaaa tatacagatt aaaggaggag tatcatgctt
    35821 acagaacaag agaaagacat tatcaaacaa acggtgcctt tacttaaaga gaaagggaca
    35881 gaaattacgt caatctttta tccaaaaatg tttaaagcgc atcctgaact tttaaacatg
    35941 tttaatcaaa cgaaccaaaa acgaggcatg caatcttcag cattagcaca agctgtaatg
    36001 gccgcagcgg ttaatatcga taacttaagt gttattaaac cagtcattat gccagtcgca
    36061 tataaacact gcgcactaca agtttatgct gaacattatc caattgtggg gaaaaattta
    36121 ttaaaagcca ttcaagacgt gacaggatta gaagaaaatg accctgtcat tcaagcttgg
    36181 gcaaaagcat atggcgttat tgcggatgtg ttcatccaaa ttgaaaaaga aatttatgat
    36241 caaatgatgt ggattggttt taaaccattc aaaattacca atattaaaca agaatctgaa
    36301 gacattaaat catttacagt tgaaactgaa gaatatgact ttagtgaatt tacaccaggc
    36361 caatacatca cagttgatgt ttctagtgat aaacttccat atagagctaa acgtcactat
    36421 tctatcgtat caggtgaaaa aaaccattta acttttggcg ttaaacgtga tgtcacaaca
    36481 gaacatgaag gcgaagtttc aacaatttta cacgatgaga ttaaagaagg cgatatgatt
    36541 aatttagctg cgcctgtagg tggattcgta ttagagaata cgactgaacc acaacttttc
    36601 ttaggttcag gtattggtgt tacaccttta gtagctatgt atgaagctgc ctctgccaaa
    36661 ggtttagata cacagatggt tcaagttgct gaaaatgaac aacatttacc tttcaaagac
    36721 aacttcaaca gtatcgcaag ccatcatgac aacgctaaat tatatacaca cttaaaagat
    36781 aaacaaggct atattggtgc tgaagaatta caagtatttt tagcaaataa acctgaaatt
    36841 tatatctgtg gtggtacaaa attcttacaa tctatgatcg aagcacttaa atctttaaat
    36901 tacgatatgg atcgcgtaca ctacgaaaca tttattccaa gactaagcgt tgcagtataa
    36961 ctgagaaaag aggtttagtg ctcatatgaa acttaatcaa cgttacgtaa aagtatttgc
    37021 attatatttc gtaagtattg ttactgcaaa tattattgtt aaaaataata atttaattaa
    37081 aacattgata caaaccatag ccgggtacac ggtctttgca gttggtttga agtatttaac
    37141 taaacgtaaa aataaatgac atctatacca aaacagctat gactttactt tgtcatggct
    37201 gttttttaat tgggagtagg acagagatga tattttcgca aaatttattt ggtcgtccca
    37261 ccacaacatg cattgatgta tgctcactga atttcataag aaaggagttc acaagatgac
    37321 cgtagatatt ggacggattt atgacaataa agataatacc gacgctattc gtatcctagt
    37381 cgatagagtc tggccgagag gtatttcgaa aagaactgct aacctagatt attggttaaa
    37441 agacattgcc ccttctactg agttgcgaca atggttccaa catgatccta aactttttgg
    37501 agcttttaaa gaaaaatatg aaaaagaatt acgtgatcag gatgcgcaaa aagatgcttt
    37561 tgaaaaatta aaggatattg taaatcagca taatcatgtt ctattgttat atgcagcaaa
    37621 agatactaaa cataaccaag ctgtagtact acagcagttg ctcaatactt agttatatat
    37681 gtttatcgtg aatcactata aatgtcgcta acttcatttc taatatttat ttttaaaaag
    37741 cataattact acaattaatt gaactttaat aattactaaa cttgaacaac attttacttt
    37801 aacaaaataa agttttaaaa tattaattgt tgggttttac atagtaatta gaaagagagt
    37861 gttaatgaaa tgaagtttaa aagactagca actatatttt cagcagtatt agtgttatca
    37921 ggatgtggct caatgcattc atctggcaaa gacttaaata tttcgttacc gttaaaaaca
    37981 aagtctattg caccttatga aacagatgta ccagttaaga ttggtgctgc agaatcatta
    38041 tttaaaacaa atgatcaagg aaaaatagaa aaagcattag tgaaatcgta tcatcaacca
    38101 aatgatacaa cgttagatat agaattaaaa gataatatta aatttcaaaa cggtcaaaaa
    38161 ttgactgcag aaaaagtgaa atctagcctt gaaaatagca tgaaaaaaag cgacttggtc
    38221 aaatattcat taccaatatc atcaattacc gctaaaggtc aaaaactgac aattaaaacc
    38281 aactccgctt accctgaact tgtatctgaa ttagctaatc cttttatggc aatttatgat
    38341 acagatgcta aatcagatgt taatcaaact cctgttggta caggccctta ccaaataaaa
    38401 gattataagc aatctcgaaa aatatcattg tcgaatttta aggactattg gcaaggtaaa
    38461 ccgaaacttg atcatattac tgtgacgtac caagaagacg gcaataatcg cgtcagaaat
    38521 ttagaatctc aaaaagatga tttaataact gatgtcccag ttaataaagt tcaagacata
    38581 gaaaataatc aaaatttaaa agtgtcaaaa gaatctggat ttagaacttc tttacttatg
    38641 tataatcata ctaataaaaa aatgactaaa tccgttcgtg aagcattaga tcatatcatt
    38701 gatagacaag gtattgcaga tcatatttat caaggttatg cgaaacctgc aacgagtcca
    38761 tttaatgata aaattccata tattaaagaa cctaagttaa ccaaacaaaa tatcgaacaa
    38821 gcaaaaatgt tattagctaa agatggttat acaaaagaac accctttaaa aattaagtta
    38881 attacgtatg acggtcgtcc agagctatcg aaaattgcgc aagtattaca atcagatgct
    38941 aaaaaagcaa atattgaaat cgacattaaa agtgttgatg acatagaagg ttacttaaaa
    39001 gaccgttctg catgggatgc aacgatgtat agtttcggaa caattcctcg tggagataca
    39061 ggttatttct ttaatcaagc atataaaaaa gatggtgcta ttaataaagg agactacaat
    39121 aatagcaacg tcgatgattt aattaatcaa ttgaatcata ctgtagatgt taaggaacgt
    39181 cacaatattt ctaatgatat tattaaatta tcaagtcgag atgtaccaaa cagttatatt
    39241 gcttacaacg atcaaatagt cgctgctaac tctaaggtta aaaattataa agtaacacct
    39301 gaaggtatct atttaatcga ttatcgaaca acgattgaac gataagggag tgtgggacat
    39361 tgatttatgt ctcagccctg cttcaactat aaaaaccacg ccgaagtcat ccaatatgat
    39421 tatggcgtgg tttaatttgc ttatatgatt gtattaattt ctgtttgatg aatttcaata
    39481 aaatgattat tacatacttt cagtgaatca tgttcatttt atataaatct aattgtcact
    39541 atttgtttaa cgtgaaacac ttttttaact ccaaaaagta ttcctattcc actcttttaa
    39601 agacaaatta taaaaatagc ttatgtcaca aacatatgag caacataagc tttaattatt
    39661 attcgtctac ttttttctgt tgttctttaa attctttctg cagtaaattc acttgtttta
    39721 aacctgcccc cattaaaatg aatacaagta tccacacaat aacgattaaa ataaatattt
    39781 tcaacgtatc actgccaagt acagttaaag atgtatccca aatgccatgt aaaacaacgg
    39841 ctgataaaaa gaatattaaa aagcgtttat caaaaatatc tttgaattca aagccatgct
    39901 gttctttcgc aataactatt gcagcaccaa caatcgctga ccaaactaaa tgaccaccaa
    39961 tcgcagtcca cgcacgtgtg aagacaatat ctaataatgg gacattttct cctaaagcga
    40021 aattcaaaat ataacctgct gattcaaaaa ctgcgaaccc tgcaccaata gcagcaccga
    40081 ttaataatcc attcaaaatc ttatttgttt tcaatttatt gacgaaataa acaataatga
    40141 gtgcttttcc agtttcttca actaatccta ctaaaaatgc atcgaaaaat gttaaagaac
    40201 caaacctttc gaattgatca ctaaaaacga caaatctata taataccatc gtacttagta
    40261 atgaaaatac gccgccaata aagaacatga taataacttc aaaaatgcta atatttttaa
    40321 acgcatttga ttcataaaag aagaacaaac ccgataatgg tactgttaaa gcccctataa
    40381 aaatgagacc cggaatcgcg ttagtgttat taaaaattgc tgccatgacc cataatccaa
    40441 taaatgttac tgtgaaagcg atgaatactc gagaaaagag ccatggcttc ccccattctt
    40501 ctgatatgtc acaaattgct ggcgtagttt tagcagtacc cgctataaat atttcatctg
    40561 cttcgttttt agtatgcggc ttaaatactt cagaaagcat atcttttaaa ttaagattta
    40621 agctttcatc attgcccgct agtctaccga ttgatttggt tgcattatca aataaacttc
    40681 ttgcttcgtt ttttaaatct gtattttgcg ctgtttcatg cgctttagct tccatttgtt
    40741 tatcgataga ttcattatgt atgtcggacg tcttagttga ttgtgtactt gctgatgaca
    40801 tcccctcttc acctgtatta ggtgcaactg attgcgtttg tgttgtctct tctttttctg
    40861 tatttcttcg atgattaaga ccttccatag acttacctac tttcactttt cataataaaa
    40921 ctattttaat ttaatattga tggattttcc atattttaat ataaatactt tgttcgattg
    40981 ggcactttgt atttcatatt taaaaatcaa aacctattta actttttata ttccgaacaa
    41041 tatttttata taagtatttt aatgatattc aattcattac aaacccttga tattacaatt
    41101 gttatcgacc gtcaaaatgt gtctatactg tgtctattat cagaataaaa agatatttct
    41161 aattgatttt aaacgtcgtt atgttatatt tcttgtaagg gtttacacaa agtgtaaaaa
    41221 cgctatattt tatcaaatgt gatggaggtg acttgcttga aacaaatcac atggcacgac
    41281 ttacaacata tcattaaaga tggtgatgtg attggtttac cagcattagc tgtagccaac
    41341 ttacccgccg aagttctacg tgctgtgtta gcgcaacatg acacatatca tacgcccaat
    41401 gatttaacgt ttatattagc gaatgatatt catagtttag gtgccgcacc ggatttagat
    41461 gattttatag aacgtcgcat gattaaacgt gtcattatga gtattttaac ggcttcttcc
    41521 aaaacggcac aagcaatgaa aaataatgac attgaagctt attttttacc acaaggtatc
    41581 attgcaactc attatcgtca gagtaatcaa ttattacctg gagttattac taaaatcgga
    41641 ttaaacacag ctgttgatcc tagatacggt ggcggtaaag taaatacacg aacaacggat
    41701 gatttagttt cattagtaac catcaacgat gaaacatact tacattacac attccctagc
    41761 gttgatgtgg cactactgag aggaacatac gcagatcaac aaggtaacat ttatttaact
    41821 caagaagcgt acttgagcga gtgttatcat gtcgcattaa acgcgaaagc caatcatggg
    41881 aaagttattg tacaagttaa agctttagtt gacgactatc aactaaaacc gaatgaagtt
    41941 gttatcccag gaaatcttgt cgattatgta tacgtcacag aagatgaaaa gaatcaccgc
    42001 caagtaattc aaagtcatta tttaccagcc ttgtctggag aagaacgaat tgatggaata
    42061 cctgaacccg cattaccttt taatagtcgc aaattgattc tccgacgtgc tgctcagttt
    42121 ttaacttatg gcgatacaat tagcatcggt tatggcatca ataatgaact ctctaattta
    42181 ttgcatgaag aatgtgttga acatgatgtg caaccgattt tagatgttgg cattttcggt
    42241 ggattcgttg ggagtcgtga acattttggt atgaattaca atgcagatgt gcgcatgcct
    42301 catgatcgag catgggattt tatttataac aatggtgtat cagttgccta tcttagcttt
    42361 gctgaggttg atcaatacgg caatgtcaac gtgtcttact tcaatgaccg actaaatgga
    42421 tgtggtggct ttatagacat tacgcaatct gtaaataaaa ttatcttttc aggtactttt
    42481 gtagctggca gtcatgtctc atgccataat caacgattaa acattgaaac tgaaggacaa
    42541 aaccagaaat ttgtatcaga tgtgagccat atcgacttta atgcacaata ttcacaatca
    42601 ctcgagcaag aaatctattt tgttactgat cgtgcagtat tcgaactcac caatcaaggc
    42661 ttgaaactaa ttgaaattgc accaggtctt gatttgcata aagatatttt gaatcaaatg
    42721 gcttttaaac caattattgc tgatcattta aaattaattg ataccagcat ttacaaagaa
    42781 aaatggggac aacttaaaca atcaattcat aaagtatgaa agtgaagcta aagggggtat
    42841 actaatgaat ttcgattgga taaaaacgcg ttcagacttc gatgatgaca agcctgccgt
    42901 tattgatcac gcaaaacaaa catcttggac ataccaacaa ctcaatgcac gcgctgataa
    42961 tatggcacat tatttaacat ctcaaggtgt taaaaaaggc gatgttatcg gtatttttgc
    43021 gccaaatgat attgcaatat tagatttatt gtttgcttgt tttaaaacag gtgcggtttt
    43081 tttaccattg aattggcggc ttaacccaaa agaaattgca gccattgtgg aagatgcaca
    43141 attaaaactg ctcttctatg ctgaaaaaca tttaagttca ctcaccgata ttgaccaaaa
    43201 cttattgcat atggatattg atgtggcgca atatgatgaa atcgtaaatc cagattatca
    43261 ccaacctttt caagcaacac ctgttgaacc acaagatctt gcagcattaa tttatacaag
    43321 tggtacaacc ggatcaccta aaggtgtgat gttctcatat gaatcatttg ttcataacgg
    43381 tgcaaactta gagctgacgt ataagttcaa ttcaaactat attacgattg tatcaacacc
    43441 aatgttccat gttttagggt ttaacgatac tgtattacca gtattaatgt caggtggcac
    43501 acttattctt caacgttact ttaacggcga agaattgaat gacatgattg cacaatatca
    43561 ccctacattt attatcatga ttccgacaat gtattatagt acgctacgtg ctagtaattt
    43621 taatcctgaa aattttagag ctatggatta tatcatccaa ggtggttcac aaccattacc
    43681 aagtatccaa gcagctttta aacaatatgg cataaacatt attaacggct atggtttaac
    43741 tgaagcacct cttgtacttg ttaatacacc ggaaaattca aaacgtaagc caatgagtat
    43801 tggtaaagca gtcatgttcg ttgatgcacg tatccttgat gataacggtg aggaagtacc
    43861 tactggtgag attggcgaac ttgcaattaa ggctaaaaat gtcacgccag gatattggaa
    43921 taaaccagca gagactgcca aagcatttca tggtcgatat ttattaactg gtgacttagc
    43981 gaagatggac aacgatggcg atatatttat tattgaccgc aaaaaagaat taatcataac
    44041 tggtggcgaa aatgtcttac catccgaagt cgaaaatgct ttagctgagc atccactagt
    44101 agaccggtgt gtggtcgttg gctatgatca tccaaaatat ggtgaatcaa ttgctgcagc
    44161 cattatactt cgcgaagatg aacctcatta cgctgaaatt ttaaatcaac atatgcgaag
    44221 tcgtttagca ggttataaag tcccaagaat gtatgtacca gtgacacata tgccgttaaa
    44281 cagtacgcag aaaccagata aacttgcgat tcgacaaatg atgaatgaca aagtctcgca
    44341 aacactttaa aggtgataaa aatttttgac atttagtgta agcgtttaca aataaagcgt
    44401 gttgtttttg aattaaatgc atttcacatt agtattcata ttatttttag gaggaattta
    44461 tatgacattt gaaaaagaaa cggtcttaaa aacattattt cctgaagatg tacttagtat
    44521 tgctaaaggt ttaacagacg gtgaagtcga atttttacaa caagtagatt cattgctaga
    44581 aagtaagtac cgtgaaaata ttaatcaaca ttggatagac gctactgtac ccgaggacta
    44641 ttttaaagat ctgggagaat taaattattt taacaatcca ttactttaca aggatcgtcc
    44701 aaacgccaaa atgcctagtc aactatttca gtttttcatg tcttacctac tcgcgcgatt
    44761 tgatatttcc ttagctaccc tactcggtgt tcaccaaggt ttagggcata acactttcta
    44821 tttcggaggt agcaaagaac aaattgcgaa atatgtacct aaattacagt cacatgaact
    44881 gcgtacatgc tttgctttaa ctgaaccaga acacggttcg gacgttgcgg gaggtcttga
    44941 aacagtcgct gaacgccaag gcgatacttg ggttatcaat ggtgaaaaga aatggattgg
    45001 tggtgcacat gtatctgatg tcattccagt attcgcagta aataaagaaa ctggcaaacc
    45061 ccattgcttt gtagtcagac cagaacaaga tggcgtcgat attgaagtca ttgataataa
    45121 aatcgcactt cgcattgttc ctaacgccct aattaaatta actaatgtca aagtagatga
    45181 agcggatcgc ttacaaaaca taacaagctt taaagatatt gccaaaattc tttattcaac
    45241 gagagcaggc gttgcttata tggctacagg tggtatggct ggcgctttac gtgccacatt
    45301 agattatgtc actgagcgta agcaattcgg caaaccaatt agtaaatatc agttaataca
    45361 agaaaagcta gcaatgatgc aaggtaattt agctcaagca atggcaacat gtgctcaatt
    45421 agctaatatg caagcacatg gtgaatatga cgaggttgca acttcaacgg cgaagatgat
    45481 gaatgcctta cgtttgcgtg agacagtagc tatgggccgc ggtattacag gtggtaatgg
    45541 catactagct gacgattatg atattgcacg tttcttctct gatgcagaag cgatttacac
    45601 gtacgaaggt acacatgaaa ttaatgcctt agtaattgga cgcgctttga ctggagattc
    45661 tgctttcgta taaatagcaa ataattatat gagatgcatt aatttcacta aaaaagactt
    45721 attttaagca taaagctttt tccttaaata agaggctaag atgactgtca aagatactta
    45781 attaatttta taaaatagca acgttattcc aattatctta atggttatct tatcctcaac
    45841 taaattggag gaatcactat gacaattaat aaagtaaccg ttcttggcgc aggcacaatg
    45901 ggcgctcaac tggcagcact ttttgtgaat gctggactta aagtaaaact attagatatt
    45961 gtagtggaca aaaacgatcc aaatctcatt gcgaaaaaat cttacgataa aattacagat
    46021 aagaaacggc cgctactatt cgacttaaat ctagcgagtc atttaacata tggtaatttt
    46081 gatgatgact tggtaaatga tgatgctgat ttatatatcg aagcagtcaa agaagatatt
    46141 gaaattaagc atgctgtttg gcaacaagtt ctacaacatg ctaaagaaga tgctttattc
    46201 gctacaaata catcaggtat tccaattaat gcgattgctc aagcatttaa cgagaaggat
    46261 caagaacgat tctttggtct acatttcttt aacccaccac gtattatgaa attagtggag
    46321 ttaataccta cgtcacacac gaaggaatct attatattag atgtaaaaaa tttcgcgcaa
    46381 aatgtgttag gtaaaggtgt cattgtcgtc aatgatgtgc ctggctttgt cgcaaataga
    46441 gtcggcacgc aaacaatgaa tgatattatg tatcgcgccg agcaacacaa gataagcatt
    46501 gtagatgtgg atgctttaac tgggcaagcg attggtcgtc ctaaaacagg tacatatgcg
    46561 ctatctgacc tagtcggttt agatattgca gtgtctgtaa ttaaaggcat gcaacaagta
    46621 cctgaagaaa caccttattt tcatgatgtc aaaattgtaa atacgttgtt tgacaatggc
    46681 gcactcggac gtaaaacgaa acaaggattt tacaaaaagg ataaagaaac taaagctcga
    46741 cttgtttacg atgttgaaaa acaagattat gtacctgtat cgcaaccaca attaccaatt
    46801 ttaaatgaat ttaataaaga cttagtgcat aaccttgata ccatattcaa tgcgcaagac
    46861 gaagcgggac tatttttatg ggagacatta cgtaataatt tctattactc tgctatcaat
    46921 gtacctaaag ctaccgatga tttccgagac atagaccgtg cgcttgtctg ggggttcaac
    46981 tggaaacttg gtccattcca attatgggat gcaatgggat acgaacgtgt taaaacacgt
    47041 atggaagacg aacttggaga cttaccacaa tggattagtg atttagatgg tggcttttat
    47101 aaacaagatg agaccattga atatgcaaca cctatttctc acttcgtaaa agatgaactt
    47161 tgggataaag gtgatgccaa actttccgta actcatgatg atcaactgtt actgaaatta
    47221 caaagtaaaa ataatgtcat taccgatgaa ttcaacgatg cgttagttga tgcgattgat
    47281 ttactggaaa atgaccatta cacaagtatg gttatttatg cagatggtaa caatttcagt
    47341 gtgggtgcta accttttctt aatgaaaaag gcgcatgaag acggtcttgt agatgatgtc
    47401 gttgcacaat caattgataa attacattat agctttaatc gtttgaagta tagtttgaaa
    47461 ccagtagtca cagctgttca aggtcgtgcc ttaggcggtg gctgtgagct tgtactttac
    47521 tcacctattg ttgtcgctgc aagtgaaaca tatatcggtc ttgttgaagc aggtgttggc
    47581 ttattaccga gtggcggtgg ccttgcagaa atggctgatc gcatattacg cacatcgcat
    47641 aagtttgatg acaaacaagc ttccatgaca aaagtactga cgaatatcgc atttgcgaaa
    47701 gtctctacaa atgcctttga ggcacgtcgt tatggttatt tacgtgatac agatacgatt
    47761 attttcaata cagcacaacg tgtcgaagtt gcgctcaaac gtgcgaaata tgaagcagaa
    47821 acaaactata ttccgaatcc tagacatcaa tatatcgctt taggtgaaga cttcaaagca
    47881 ttgatccaag gacaattaga tgcgcaaaga cggggtcatt ttattagcga ccatgattat
    47941 catattgcct taaatatcgc cacaatttta gcgggtggtg atttaccaag aaatacattt
    48001 atcaatcaac gttacattca atcgttggag aaaattggct ttattgactt actaaaatct
    48061 aaaaaatcat atgaaagaat tgcacatatg ttaaaaactg gtaagccatt acgtaattaa
    48121 aagatagtca ttaagagagg atgataacca tgcaagaagc atacattgta gcttatgggc
    48181 gttcagccgc agcgaaagca aagcaaggcg cattattcca cgaaagacct gatgatgtcg
    48241 cagccaaagt attacaaggc gtattgaaac gtattgacgg aaaattcaat aagaatatga
    48301 ttgaagatgt cattgttggt acggcttttc cagaaggatt acaaggccaa aacattgcac
    48361 gaacgattgc attgcgtgcg ggattatctg acacggtacc gggtcaaaca gtgaatcgct
    48421 actgctcatc aggattacaa accatcgcga ttgcagccaa tcaaattatg gctggtcaag
    48481 gagatatact tgtagctggt ggcgttgaat tgatgagtgc cgtaccaatg ggtggcaacg
    48541 agcccacaaa caatccaacc ttacaatatg atgatatagg tgcgtcatat cctatgggtt
    48601 taactgctga aaatgtagca tcccaatttg acgtatcacg tgaagatcaa gatgcttatg
    48661 ctgtcagaag tcatcaacgt gcctatgacg cacaacgtga tggtcggttc aaagatgaaa
    48721 ttattccaat acaagtaaac tcagttgaat atacaaacgc aggaccaaaa gtacacacaa
    48781 atatctttga ccaagatgaa tttatacgcc ctgacaccac gatggaggca ttagccaaat
    48841 tacgtacagt atttaaagct gacggcactg tgactgcagg aacatctgcc ccactttctg
    48901 atggtgcagg atttgtagtt ttaatgtctg gagataaagt gaaagaactc ggcgtgacac
    48961 ctattgcacg attcgttggt tttaaggcag taggcgttga cccgaaaatt atgggtattg
    49021 ggcctgcata tgcgattcct gaagtattgt cactcagcaa tctatctgtt gaagacattg
    49081 atttgatcga attgaacgaa gcatttgctt ctcaaacgat tgcatctatt aaagaagtag
    49141 gtctagatat atcacgtacg aatgtgaatg gtggcgctat tgctttaggt catccattag
    49201 gtgctacagg cgcaatgtta accgcgcgtt tacttaatga aatgggtaga cgtcccgata
    49261 gccgttacgg catggttacg atgtgtattg gtgtcggcat gggtgcagct gctatatttg
    49321 aatatgtgcg ttagaatggt tgattttgga tgaagcggat tcgttttgtt attgaatgaa
    49381 gtaggctgaa gttgaagcca gttgaagttg aagcgggttg aagcaatttc gttttattaa
    49441 tgaagctgtg tgaaatatag tgattgaaca aaaaagtggt ttaatgggat ggtggttatt
    49501 tccgttttag aatttaacat ttacacgtct aattttaatc attgttttaa attttatgaa
    49561 tcgaagccct ttgatttaat aatatttgct aatgctagta acttatctga ttgttcatgt
    49621 ttaaaataaa gaaaaccact cacatcagtg tgtgttcgaa ctagacttgt aagttccagt
    49681 tcggcacgac tttctaaagc aattattatt gctgtgattg tcgtatatca cttagatgtg
    49741 cgtggtttat tttaataggt tagtaatata ttaggtcatg ttatgtttaa gactataatg
    49801 aataaataat ttagaaatat gcttccgatt gttcgatgct ttaattcagt tagaagcatc
    49861 atagaatgca tgattactgt tgtaaagata cgtaatgttt tgtattgact gtatgtcttt
    49921 ggatagagtt acaaacttat tttgttactc taggcccata tgtcgcagta ccatctgcat
    49981 gtgttgttac attgtatgca tttgttttac ttggcttctt gtatgtcggg cgagctccgt
    50041 atgacacttg accgtttgca tgtgttgtta cgttgtatgc atttgttttg cttggcttgt
    50101 tttgtgttgg gcgagcgcca tatgatactt ggccgtttcc atgtgttgtt acgttatatg
    50161 cgtttgtttt gcttggcttg ttttgtgtcg gacgagctcc gtatgatact tgaccatttg
    50221 catgtgttgt tacgttatat gcatttgttt ctgatggctt attgaatctt ggtctcgctt
    50281 catatccaaa tgttccatcg ttgtattcac ggatacctgt accagcatct ctatatttaa
    50341 catatttagg tgttttgtta aattgcggtc tcggaccata ttgagaagct tctgttgttt
    50401 cagttgcttg aggtttaact tcaatatcac ttgattctcc ttgagtacct tttaacgttg
    50461 attcagtacc ttgtggtttt atttcaagtt tagatgagct accttcaaga ccttctaaaa
    50521 tagggttcgt taacggtggg tttgtataat tattgcttaa tgatgggccg ctttgttcca
    50581 ttgttagaaa atcgggacct tgaacgattt caccttgtac cgttttattt tccatcgttg
    50641 gatattccgg accttttaca atttcacctg taattgtgcc ctgtggaatt ttaactaatg
    50701 gttgtgcaac tggttgtgtt gtttcttcag ctttaccagc cgtagtttta acctcttgtt
    50761 ggttatcaac tttaggtgct tgaggttctt caactttctt ctcttctttt actactggcg
    50821 attttgtttc agtttctccg tattttttga cagttttctt tttccaagaa tcatctgctt
    50881 ctttaactgc ttttttcgtt tcttcaacta atttatcaaa attaggttta ttatcactat
    50941 ttgttttata gttatgtgtt gtaggattat atttcgttat agatttcggt ctattttgtt
    51001 tagtttccat aaagaaatca tcaataattg aatttaagtc atcaatcatt tcttttttaa
    51061 tacgttcatt tgtaatttta tgtggattgt ctgtatctcc aaggattaag tccagttttg
    51121 ctcgtaactc tttcgcgtgc tccccataat ccttatcacc ataatatgat acaactaatg
    51181 tatcaatttc agatacgaga tcgtatactt ccttagttgc tttatcttct tctgctgcat
    51241 taaaagtttt caagtctgaa ttcttatcct taatatcttt aacttctctg tgaaaatcat
    51301 ccagtgctct ctttaatgca tcctgtagtt cattgtattc tttcatcgaa agttcttcta
    51361 aattatattt atgaaaatta gccattttta aatctgtacg aggattttct tttttataat
    51421 ttgcatacca ttgtttataa tcttcatatt gagatttctt tctctccaaa agatattgat
    51481 cttcccttaa taccttttcc aacaacctat ctttagcttc tttataaata ttatctccat
    51541 attcatattt attagttaat cctatagcat aaattatata gtcttccaaa taatatagag
    51601 ctgaatttaa atatctgcta tctattaatg tcccattttt actcccagca ttaacttgtg
    51661 atttcccact ataatccttt gttactatcg catctgcttt gttatcccat gtaaataagc
    51721 tagatgcaac tgctaatgcg cctagcgaaa ttatttgctt tttcataatt ttttaattcc
    51781 tccaaaatgt aattgcccaa tctacattaa agaaacaaaa tattaaaaga cattaactat
    51841 atattaacta gaataaacaa agcattaact atctttttgt tatagttaat tagctttgca
    51901 atatacaata gtgtataatt tttttgatta atgtacatca aaggagtaac aaagcatgac
    51961 aacacaaatg aaaatcaaaa catatttagt tgctggtatt aaagcggcgc tccttgatac
    52021 gactggtatt aaattagcaa gcaaatctga aactacatca catacgtatc aacatcaagc
    52081 gcttgtagat caattacatg aattaatagc aaacactgac ttaaataaat tatcgtacct
    52141 aaatttagat gcgtttcaaa aacgcgatat tttagctgcg cactatattg caaaatccgc
    52201 tatacgcact aaaaatttgg atcaaatgac taaagcgaaa caaagattag aaagtattta
    52261 caattcaatt tctaaccctt tgcattcaca aaacaattaa taattcacca ataaatcatg
    52321 taagtgtttg tgacgccaaa ttgccataca aatacttgtc atatgaatat aaacgaatga
    52381 aacgattgcc tatcccatag atggcaacat taaaaagacc tctgaaggta tcatcttgat
    52441 aactttagag gtctttgttt atattattca aacaaaattc ttatagaacg atcgaagtat
    52501 gtttcgtctt tcttttcttc tttaatctga tcagctaatg ctgggtcatc tgtgataata
    52561 ccatcaacat tggtttgtaa gtatttcgtt aaatcttctt cgccgttaat agtccaagta
    52621 tagacttctt tattttccaa gtgcgcttga ttaacaagtc ttggcgaata agaaaaatct
    52681 tcgatgacaa agaaatctaa tgatgtttct ttaaaatgac caaactgcaa cggaatgata
    52741 taaccacact tgagatatgg cgcttctttt ttcaacttag tcatcacatc ataatccaaa
    52801 gacatcacac gatattgatg ttcaacacca tgctttttca aaatatcaat aacacgttgt
    52861 gtataatctg ctggttcttt accatgtggc tttaactcta ctagtagctt cacatttgat
    52921 tgtttagccg tttcaataaa ttcgtctaag gatacaaatt ttgcttcatg tccattttga
    52981 cgcattttca aaccgacgat atctttgaaa ttagattcag aaatattttt attaacacct
    53041 gttaaacgtt tcaaattgtt atcatgacta acaacaaatt gtttatcttt cgtcataatt
    53101 gtatctaact caacgtattc gacattcgct tttgcagcag ctttcaatga cggaatagaa
    53161 ttttcaacgc ctttatcttc gaaaccacga tggccaataa tggagatatt tgtattgata
    53221 gtattattgt aaagtaagta catgttataa ccgataaaac atgtcactgc aagcaccatt
    53281 gaaattataa agaacctaga cttccgtttc ggttttggat atttaaattc taagcccggt
    53341 tggtctaata cattctcttg ttttaagtgc agtactaaca cactgattaa tgataatttc
    53401 gtaaataaat aatagaagaa caatgcgctt ttcaatacaa caaataaaat tgatgagact
    53461 aaaaacttat ctccttcttc atctacacaa atagcaagat atgttgctcc tgaaataatt
    53521 aatgttaaaa tcgcaccaat gatgagttct aatataacta tttctataac aagccgaaac
    53581 ttatttcgct tcgtaatttg ccaacttagt ctcatatttt taaataacga ctggcggttt
    53641 aaaatcgtta acggtagagt aaatattaat ttaaaattta atataaatac agcaatcata
    53701 aaggtaccgt aaatgattat acctttcgtc gttttcataa gttcttccgt taaaaattta
    53761 ggtatgtaaa tattttttgt taatactgaa cttagtccta ggttggcaat gggtatcatt
    53821 aacattaaat aaatgacaaa gaaaataact ggtacaccta tgagtttacg cacatttaca
    53881 aaggcatttt taaaaatgga tttaaatgta ataatctgtc gatcaaagcc ggcataaacc
    53941 atataaacta acaatgaaaa ctctacataa atcagaaagg caacacttaa tatgaatata
    54001 ataagaagta tcacactggc gggatgacta acgatttccg tccaattgtt aatcgtaagt
    54061 tggctttgcc cagctacttt taacatcata ttaaatagta aaattaagta tgtactacta
    54121 ataaaaatca tgattaactg caatagtaag gcattaatgc taaaacgccc tttattttga
    54181 tacagtaatt taaatactgc ccatatatct ttactaattc tcttcataat cacgctccgc
    54241 attgctttaa tattaagttt catcttaata tttttcatta ctcagggtca ataaaaattt
    54301 gaaaagactc atattcatat gcaagtagca aataataacc cattcaacat cagctaaatg
    54361 atgatattgg aaccccacct ttaacaagac atcacattct ttatcagcat agctacttac
    54421 aaaaacgtct tccttcaacc attgtagaag ttgtctcata tacttactac gtcttgctaa
    54481 tactcaatac tcaattgaaa aagaagcata tgccccttca ctcttgaagt tgcatatgct
    54541 ttcttttcgg tctgaattgt atttataatt caacgggaat tttccctttg aagttaacat
    54601 aacggtaggc tgctttaaca gcttcatcat cgggcgcttc gacatcttct aattcatatg
    54661 caatgcccaa tgttttccac ttatgaacac ctaactgatg atatggcaga atttcaaact
    54721 tttcgacgtt atcaagagaa ttaataaatt cccctagttt aattaaatcg tctttatcat
    54781 cagaataacc aggcacaagg acatgtcgaa tccatacagg ttgtttcata tctgacagtt
    54841 tgcgcgcgaa gttaaggatg tgtgtattag gctttcctgt caatctaata tgtttgtcat
    54901 tatcaatatg ttttatatct aataatatca agtctgtatg tttttgtaat tcttcaaaat
    54961 gcctttgaaa tgcttttgta tcattagcac atccagccga tgtgtctaag caagtgtgca
    55021 caccattttc ttttaattct gcaaataatt tttctaagaa tggcatttgt aacaatggtt
    55081 cgccaccact gactgttaca ccgccacccg atgcatcaaa gtatggtttg tatggtaata
    55141 tttcattcac catttcatca actgtgactt ctcttgatgg ctcactaatt ttccaagtat
    55201 ctggattgtg gcaatacaag catctaagta agcatccttg tgtaaataat atatatctta
    55261 atcccggtcc atcgacagta cctaaacttt cgacagaatg taagtgtccc ttaagcatag
    55321 tgctcccacc ttaaattttg ttacatactt tcatggaatg tacgagaaat tacatctaat
    55381 tgttgttcac gtgttaattt aatgaagtta acagcgtaac cagatacacg gattgttaac
    55441 tgtggatatt cttctggatg ttccattgca tctattaatg tttcacggtt aaatacgtta
    55501 atatttaagt ggtgaccaca ttgcattgcg taaccatcta acatactagt taagttacgg
    55561 ttttgatctt ctggttcttt acctaatgat tttggtacga tactgaatgt atttgaaata
    55621 ccatctttac agcaatcgta agggatctta gctacagaac ttaatgaaga taatgcacct
    55681 ttttggtcac ggccatgcat tgggtttgca cctggagcaa atggttcgcc agctttacgt
    55741 ccgtctggtg tgttaccagt tttcttaccg tatacaacgt ttgaagtaat tgttaataca
    55801 ctcattgtat gttctgaatc acgatatgtt ttatgactac gtaatttagt catgaagcgt
    55861 tctactaaat caactgcaat atcatctaca cggtcgtcat tgttaccgta tttagggaag
    55921 tcgccttcga tttcaaagtc tactacaaga ccttcttcgt tacgaattgg tttaacttgt
    55981 gcatatttaa ttgcagataa tgagtcagct gctactgata aaccagcgat acctgttgcc
    56041 attgtacgta caatttctgt atcatgtaat gccatttcaa tacgttcata gctgtattta
    56101 tcgtgcatgt agtgaataac atttaatgag ttaatgtaaa cacctgctag ccaatccatc
    56161 atttgatcaa atttcttgaa tacttcgtca tattctaata cttcgctgtt aataccttcg
    56221 aagtttggac caacttgtgc accagatttt tcatctttac caccattgat agcgtaaagt
    56281 aatgttttag ctaagttcgc acgtgcaccg aagaattgca tttgtttacc aattgtcatc
    56341 gctgatacac aacatgcgat accatagtca tcgccatagc tttcacgcat aatgtcatca
    56401 ttttcatatt ggatagaact tgttttaata ctcatttttg cacagtatgt tttgaagttg
    56461 tcaggtaaac gtactgacca taatactgtt aagtttggtt ctggagctgg acctaagtta
    56521 tctaatgagt gtaagaaacg gaatgagttt ttcgtaacaa gtggacgtcc gtcaatacct
    56581 acaccaccga tagattcagt tacccaagtt gggtctccag agaataattc attgtaatca
    56641 ggtgtacgag caaatttaac aatacgtaat ttcatgatga agtggtcaat aatttcttga
    56701 acttcgcttt cagtaataac gcctgcttta aggtcacgtt cagcatagat atctaagaat
    56761 gttgatgtac gacctaaact cattgctgca ccgttttgtt ctttaattgc agcaaggtat
    56821 gctaagtata accattgaac tgcttctttg aagttttctg ctggacggct taaatcgaaa
    56881 ccatattttt gtccaagttc ttttaattct tttaatgcac gatattgttc tgataattct
    56941 tcacgtaaac gaattacatc ttctgacatt tctgtagaca tcgtgttgaa gtcgtgcatt
    57001 ttttcttcca ttaagaaatc tacaccatat aaagctacac gacgatagtc accgataata
    57061 cgtccacgtc cgtatgcatc aggtaaacca gtgattacac ctgctttacg gcagttcaac
    57121 atttctctag aatatgcatc gaatacacct tggttatgtg ttttacgata atctgtaaag
    57181 attttttcag tttcttcgtc taattcgtaa ccgtaagctt cacaagctgc tttcgccata
    57241 cgaataccac cgaatggttg cattgaacgt ttgaatggct tttcagtttg tacacctaca
    57301 attgtttcta aatctttgtc taaataacca gcatcatgag atgtgattgt tgaagctact
    57361 ttcgtgtcca tatcccacat gccgccacgt tcacgttctt ctttcgataa ctgcattact
    57421 tgttcccaaa gtttagaagt tgcttctgtt ggtcctgcta aaaatgaatc attaccttca
    57481 taaagagtgt agtttaattg gataaactct cttacatcta cgtgtctgtt ccatcttcca
    57541 tttttaaatc cttgccaagc tgttgcatga tttttatttg tttctaacat actaaacgcc
    57601 tccatctgta taatgttgtg aatttgaaat gctatgttaa cgttttcata gtcattgtag
    57661 catgtttgtt gtgatttttt tcacataaat tatgtacaat tttcatcaaa tgtatgtcaa
    57721 aacatagaaa ctgtactaat ttgtgtaaca gtaatatgct aattgcattc tgttacacaa
    57781 cagttataat gttcactatt ttcattgctt taaaagttaa tttaggagta tatatttgtt
    57841 tataaaaaat gattgttgat aagcgttaaa tcaacactta gaaagattta cttttatata
    57901 tgaagagact ggattaaata cttttattga cgtaaaaatt cacttttgaa ccgttcaata
    57961 tcttgccgat ttttatataa cagctacaaa taaaatataa cagtttgatt ttacagcctc
    58021 ggtaaatcgt cttgacaaac aaaaattttg tgctatcaca acatttgcaa cgtcttaaca
    58081 agtcatctat aaacatttct aaatatttaa cattacttat gcgtcattta ttgctaaaat
    58141 tattgtatta aaatatacat agaattgatg ggatatcatg aaatcaaaaa tttatatctt
    58201 gctattattt ctcatttttt tatcagcatg cgctaatacg cgtcactctg aatccgataa
    58261 aaatgtatta acagtttatt ctccgtatca atcaaacttg attcgtccaa ttttaaatga
    58321 atttgaaaaa caagagcatg tcaaaattga aattaaacac ggatctactc aagtactgct
    58381 ttcaaacttg cataacgaag atttttcgga gcgtggtgat gtctttatgg gtggtgtgtt
    58441 gtcagaaaca attgatcatc cagaagattt tgttccctat caagatacat ctgtaacaca
    58501 gcaattagag gattatcgct cgaacaataa atatgttact agttttctat taatgccaac
    58561 agttatagta gtgaattcag atttacaagg agatattaag attcgaggtt atcaagattt
    58621 attacaacct atacttaaag gtaaaattgc gtactcaaat ccaaatacaa caacgacagg
    58681 ctatcaacat atgcgtgcta tttatagcat gcatcatcga gtaagtgatg tgcatcaatt
    58741 ccaaaaccat gcgatgcaac tgtcaaagac gtctaaagtc attgaagatg ttgcaaaagg
    58801 taaatattac gcaggtctaa gctacgaaca agatgcacgc acatggaaaa acaaaggtta
    58861 tcctgtatca atcgtttatc caattgaagg aacaatgtta aatgttgatg gtattgcttt
    58921 agttaaaaat gcacaccctc atcctaagcg taaaaagtta gtgcaatatt taacaagccg
    58981 ctcagtacaa caacgattag ttgcagagtt cgatgccaag tcaattcgaa aggatgttag
    59041 tgaacaaagc gatcagtcta tcgaaaatct taagaacata cctttaatac cgaaatctaa
    59101 attaccggat attccacatc ataaattttt ggagatgatt caatgacggc atacaaacct
    59161 tatagacatc aattaagacg atcgttattt gcgtctacta tttttccagt atttttagtc
    59221 attattattg gactagtaag cttctatgcc atctatattt ggattgagca tcgtacgatt
    59281 catcaacatg ttgatgaaag tcagtcatct ttacatcata ctgaaaagca gattcagaca
    59341 tttattacac agcataataa ttcgtttcaa gagctcgatt taacaaatca tcatgatgtg
    59401 accgctacaa aacgtgaatt attaaaatta atacaccaac agcccgcaac actttattat
    59461 gaattatctg gaccaaatca gtttataacc aataattatg aacatttaaa cactaaaaat
    59521 atgtatttat tttcaacgca tcagcttaaa ttcaaaaata gtacatatat gcttaaaatt
    59581 tatatggcta acaccccacg tttaagtgaa attaagaaag ataaccgaca attcgcactt
    59641 atcgttgatc aatatgacaa tattttatac gccaacgatg accgttttac tataggtgaa
    59701 aagtatagac cacaacaatt cggatttatg aatgaatctg taaaattaaa ccatgctgac
    59761 catcgtctca ttatttataa agatatacat gaaaacattg aagatggtat cacgttgtta
    59821 attgttatgg ccgtagttct tgttttacta gtaatatttg gtttcattag cgcagataat
    59881 atggctaaac gacaaacaaa agatatcgaa acgattattc aaaaaattta ctatgccaaa
    59941 aatcgtcatc taggtacata tacgccttta aaaaacaaca gtgaactaga agaaattaat
    60001 aattatattt acgatttatt tgaatcaaat gagcaactga tccattctat cgagcataca
    60061 gaacgtcgct tgcgtgatat tcagttaaag gaaatagaac gccaattcca gcctcatttc
    60121 ctattcaata cgatgcaaac aatacaatat ttaattacgt tatctccgaa attagcacaa
    60181 actgtggtcc aacaattatc gcaaatgtta cgttactcat tacgtacaaa ctcacataca
    60241 gtggaattaa acgaagagtt gaactacatt gaacagtatg ttgcaataca aaacatccgt
    60301 tttgatgaca tgattaagct ccatattgaa agttctgaag aagcgcgtca ccagacaatt
    60361 ggtaaaatga tgcttcagcc actcatagaa aatgctatta aacatggtag agatactgag
    60421 tcattggaca ttactatacg cctgacattg gcacgtcaga atttacatgt tttagtttgc
    60481 gacaatggta tcgggatgtc gtcatctcgc ctgcaatatg tacgccaatc tcttaataat
    60541 gatgtatttg atactaagca tttgggatta aatcatttac acaataaagc aatgattcaa
    60601 tatggttcac atgcacgact ccatattttt tcaaagcgta atcaaggtac gttaatttgt
    60661 tataaaatac cactttcaag ggggaatgta gatgtttaag gtagttattt gtgatgatga
    60721 acgaattatt cgagaaggat taaagcaaat cattccttgg ggagactatc atttcaatac
    60781 aatatacact gctaaagatg gtgttgaagc attatcacta attcaacaac atcagccaga
    60841 attagtaatt actgatattc gtatgccacg taaaaatggc gtcgatttac tcaatgatat
    60901 tgcgcatcta gattgtaatg tcatcatatt atcgagttac gatgactttg aatatatgaa
    60961 agccggcatt caacatcatg ttcttgatta tttattaaaa ccagtagacc atgcacaatt
    61021 agaagttatt ttaggaagac ttgtccgtac cttattagag caacaatcac agaacggccg
    61081 tagcttagca tcttgtcatg atgccttcca accactatta aaagtagaat acgatgatta
    61141 ttatgtaaac cagattgtgg atcaaattaa gcaatcttat caaacgaaag tgactgtttc
    61201 agatttaatt caacatatcg atgttagtga atcgtatgcg atgcgaacat ttaaagatca
    61261 tgttggtatt acaattgtcg attatttaaa tcgctatcgt attttacaat ctctgcaatt
    61321 gttagatcga cattacaaac actatgaaat tgcagacaaa gtaggctttt cagagtataa
    61381 aatgtttagc tatcatttta aaaaatattt acaaatgtcg ccaagtgatt attgtaagca
    61441 agcaaaatag attagcacat aactaatgat tatggcgcct ccattttgtt ctatgaaaaa
    61501 gcggactgat agagaagttt tcacttttct ttcagtccgc tttttagaga gtttaaatat
    61561 aaaacaatac tccctacaat attgacaccg ctatatgtct ttattgtaag gagtaaattc
    61621 attgagtcac cctaagtcgg gcaaataagg atacttcata acagggaatt atgatctgcc
    61681 ccgagacata gagatgatat atttgcaagg gtagaagcag tatctttcat ctcttcacgc
    61741 acatgccgtc ggggcaggat tgccaactat attgcaatag attggcgata cttttaatcc
    61801 gatttatatt aaatttttaa acttctaatt ttcttttctt catagaaagc aacgattcct
    61861 aatagaatca tgcctaggaa taatgcaaca tagaagacga tgaaaacatc tgtccatcca
    61921 cttaatgtat atccaaagat gtttaaaccg ttacgtgttg gatcagcaat agccgccaaa
    61981 ccaactttcg ccattgagtc accgaataga tacgcgaatg aacctgtcat tccgtttgct
    62041 acactgatgg catttttagg aacaaaacca gtcaatgata caccaattaa taattgcgga
    62101 ccaaagatta acgcacctaa tgcaaacaat gaaatgttaa ccatcatgac acttgtagca
    62161 tttgtgtaga ataagacaac aaatgtaatc ataaacatac agccaatagc tacaattgca
    62221 cgacgacctt ttaataagtc tgatacgtag ccccataata aacttgcaac taatgcacca
    62281 atttcaaagt agaatatcgt attaactgca tcgcctttac taaagtgtaa atgctctgac
    62341 acatataacg gtgcccagtt atcaataccg attcgtacaa tgtatacaaa gacgtttgaa
    62401 acacatagaa tccatataac aggatttccc aggatatatt ttttaaagat ctcccatttc
    62461 gtcatacctt gagaatcaat attttcttta tcgaccggct cttcccaaat ttcttcagca
    62521 cgattccatc ctaattcttc cggatcatct tttccgataa ataatgttgc gataccaata
    62581 agtaatgcaa tcaccgatgg gaaaatgaac atccctataa catttccatg gaagaataca
    62641 ttagcacccc aaagtgcaac accacctgct atggcaccac cgatattatg tgatgtattc
    62701 cagaatccta agtatcggcc acgtttcgtt cttggcgccc atcttgaaat cgttgaataa
    62761 cttgcaggtc caccaactga ttggaacacc ccgttaagtc cccaaagtac aattaataat
    62821 cccattacag aaccaaagta acttaaaaca aatcccataa ttaaaactgt aatcgcagat
    62881 aagataagta agaacgagat aatacgtttt gtgttacgtc catcgacaaa atatccaagt
    62941 aatgtttttc ctaaaccgta cgtgatacta aatgctaatc cgatataacc aagttctaat
    63001 gtagataatc caatttcctc ttttaaaaac ggttgtgccg ccttaaagtt gtttcgaatt
    63061 aaatacatag ccatataaac aaagaacact acgaagaaag cttgcatgaa gtttctaagc
    63121 cataatttac gttgtaccga taatggaatg cctttgttcg gaatcttatg gatatcaaaa
    63181 aagttcatct ctgtcacctc aatcattttc gttaagccaa atatatcacg tcggtgtaag
    63241 cgcttaatat ccttaaaatt attaaattat ccaaaatact gaacataaac acatacttag
    63301 aaacatattt atgtactaaa attaataaat agttaatagt atttgacaag ctttatctat
    63361 aaaatacttt atgttgtcaa aatcaacgct tatacatatg acataatgac ggaggacatc
    63421 atgattctat ctatattact tatctttttc tgtatcagac ttgtcagctt aaagatatct
    63481 attaatcact caaaacaatt aaaagcagac ggtgcagttg aatatggcgt taaaaattcg
    63541 aagtttttag caataacaca cgttttaatt tatgtattgg ctggtgtaga ggcatttatt
    63601 aataaagata catttagctt tgcaaatggt attggcttag ttatattaat ctttgcttat
    63661 atcatgttat ttatggttat taaaacttta ggtggtattt ggacattaaa attattcatt
    63721 ttacctaacc atcctattat taaatctgga ttatataaaa ttacaaaaca cccaaattac
    63781 ttcttaaaca tcattcctga attaatcggt gtattattat taacacacgc aacatataca
    63841 actattttat tagtaccgta tgcgtatttc ttatatgtac gtattaaaca agaagagaaa
    63901 ttaatgaata tttaaaaaga tgaaagcctg tcatcacttt agtctacatc gacgtccatc
    63961 tttaaagtgc attctgaaat attatattca gaaaccttta aagtatgtcg tgtctatgac
    64021 cattgtgaca acaggctttt ttttattatc atatacctca ctattgaaaa ggttatatac
    64081 tcttttcaat ggtgaggatt gttactgtga atgggtatga ccatcgctat atacttatat
    64141 aaagtacacc ttctttacaa acaatgactt gatttaaggt gtgaaatttt tggcaatggc
    64201 ttggcgacat atgcatttat tcaacactgc caccagtctt acttcagaca aacttcagac
    64261 taacctcgag ttcgtattat gcccaccaca tgtctgctgg cttgtcgtaa atattaacag
    64321 atttcaaagt ttgacaagct ttttggaaac cttcttctac tgacataata ggatcttcat
    64381 gttcaatact taatacataa tcatatccat taataataag ttgacttatg atatctgccc
    64441 atacatatgg actatgtcca taaccaactg tacggaatgt ccatgctctt gtcgcaacgt
    64501 taccatatgg ttgcatatca gttagaccat acatatttac attttcttga ttaatatacg
    64561 tatctttagc atggaagtga tgaattgcat ttgcttggcc taatatgcga atcgcagcaa
    64621 ttgggtcaat accttgccac catagatgac taggatctaa gttagcaccg atatattcat
    64681 ttgtagcctc acgtaacttc aacattgtat atggtgtatg cactaaaaat cctgcatgca
    64741 actctatggc aatttttaca tcttgctctt ttgcaaactc agctaaatct tgccaatatg
    64801 gtatcaactt ttcattccac tgataatcat aaatttcaga gtaggctgtt ggccaaggtg
    64861 taacaggcca attaggcttt ttagcggtat catctgatcc tgcaatgcca gaaaatgtat
    64921 taacaactgg cacgtctaat agatttgcta aacggattgt tttacgtaac gtttcatcgg
    64981 cttctttcgc ttctatcgga tctggagaaa ttggattgtt atgacaactg aaaccactta
    65041 tttgtaagcc tctgtctgtg attgacttca taaatgcttg gcgcttgtct tcattttcta
    65101 acaactcatc taacttacaa aatttatctc ctgggttacc acctgttcca acttcaatca
    65161 tatccaatcc agattctgag acataatcta acatatcttc aaaattttta tcgtaaaata
    65221 atactgaaaa tacacctatt ttcattgaaa agcactcctt ctttttatat tgagaatttt
    65281 gtatcatata tgataatcat taaagttgta tgctcttgtt atcaagatcg ctacgataaa
    65341 tcgcttctat aagggcattt acattgcgtg cttcttccgg tttcaccaca atctcttcta
    65401 tccctaaaca cgcattgaca aagttacgcg cctgtctctc accagcaatg tcttcgttat
    65461 gctcaacatt agctttgctt tcaaaaatag ttccaaagcg gggctcatat atttcaaatg
    65521 gaaataaatt gataccgcca tcttctcctg ataaactaac gtgaacctta tcttctttga
    65581 tatttgcaga ccacgaacat tcaaactgca tgcttgctcg attggcaaat gtcatataac
    65641 tagtaacatg atcatcgaca tcaaatttag tatgatcaaa tgttccccaa tcattaattt
    65701 gattcggttg tttgctcaat tgattatatg tttttcctag cacttcatgc ggcaccatat
    65761 ctttacctag tagccacaaa gataagtcta acaagtggca accataatcg attaaactac
    65821 cgccaccttg caacgcttta ttggtaaaaa caccccagcc aggcacttta cgcctacgca
    65881 tcgcttgtac acgtgctact aaaggtttac caaccacacc tgattcaatt gcttttttag
    65941 cagtaattgc cacatctgtg tgacgataat gatatgcgac agttaataat ttgtgatttt
    66001 tattagccgc ttcaatcatg cgatcacact cttccgtcgt catcgccatt ggcttttcac
    66061 acaatacatg gacaccatgg ttcaatgctt ctatagaaag atcagcatgg aatttattag
    66121 gtgtacaaat gaccaccgca tcaacaagtt taaacagctc gctaggtgtc tcaactgcat
    66181 gaggtatatt aaagcgcttc gcaacatcaa tcatctgcac tgtattaata tcttgtactg
    66241 caactaatga gactgtgtct ttgagtttca gcaatgctgg aatatgacgg tcttgtgcaa
    66301 taccaccaac acctatcaca ccaactttta attttgtcat gatgtgcctc cttaccgtat
    66361 gatgttattc aaagtaaatt gctttgcctg attttgcaga ctgataaatc gcttcaagaa
    66421 tttttgtaac taccattgct tgttccggtt tcacaactgg ttcagtatca tttacaactg
    66481 catcaatcca agcttttgct tcttcttcag cttcatccac ttcattacct tcataaaagt
    66541 cgacgccttt gttttccaat tcaacgtgtt tggtataaag tgtacccatg tcttcaccat
    66601 gaatacgtag accatctttc atatcagcac ctgctttagt tcctgataat gaacattttg
    66661 cctcatccac ttctaaagaa ttaatcgccc aagcggattc taaaatgatc gtcgctccat
    66721 tcttcatttt aataaatcca aacgcagaat cttcaactgt aaattcatct ggattccatg
    66781 aaccccaagc gtttgccgca tgatgctgtt tatttaattt atggaatgtt gaacccatca
    66841 ctgattctgg ttcataatta tccatcatcc ataacgttaa atctaaagcg tgtgtaccga
    66901 tatcgattaa tggtcctcca ccttgagctt cttcgtctag aaagacaccc catgttggta
    66961 ctgctcgacg acgaatggca tgtgcctttc cgaagtaaat gtctcctaag tcgccacgtt
    67021 gcgctgcttg atgtaaaaat tgactatctg ctcggaaacg attttgataa cctattgtta
    67081 attttttacc tgttgattta gctgtatcta tcattttttg agcttctgct gtcgttttag
    67141 ccattggttt ttcacacatc acatgtttac cagcatgcaa ccctgctaca gtaatttcac
    67201 aatgcgagtc atttggcgta caaacatgga taacatcaat cgtgtcatct tttaacaatg
    67261 ctttgtaatc atcataaacc tttgcattgt cagttccgta tgcttctgcc gcactcgctg
    67321 ctttcgaaat gtctacgtca caaaatgcga tcatttcaac attttcaact ttttgtaaac
    67381 ttggcatgtg cttgccattc gcaataccac cacacccaat gattccaact ttaatcgtca
    67441 tcataacgtc ctccttttaa tctttatcgt cattagtggt tctttatcaa ttctgcccca
    67501 ctcctaattt caaactaacc ttttgtcgca cctgttgtta aacctgatac taaatagcgt
    67561 tgcaagaaca agaatacgat tgctataggt actgcaatca taattgcccc tgctgcaaac
    67621 actgtgaaat tatttgcata cttatcatta ataaagttga acaatccaac tgctaatgtg
    67681 aatttttcag gacttcttaa tagtatttta ggtaatataa agtccataaa tggccccata
    67741 aaattgaaca aagcaacaac tgctaaaatc ggcttagcta atggaagcat aatttgtaag
    67801 aaaatacgca tatgccctgc accatcaatt ttggcagatt catcaagttc ttttggaatc
    67861 gtatcgaagt aacctttcac taaaaaggca ttcatcggta ttgatccacc aatatatacc
    67921 agtgttagtc caaataaaga atctaataat ccaattgtat ttagcaaaat atagattgcg
    67981 accattgcca ttaatacagg gaacatttgt aaaatcaaaa atgtaatcag cccgtattta
    68041 cgaccaacaa agcgatatct agaaaaagca tatgctgtta acgtgacaaa tatcacacta
    68101 aacagtgcat ttgcagatgc tacgataagc gtatttttat accaagtcag gtattgacta
    68161 ctgtcatcga atagtaagaa tgcataattt ttaaatgttg cattgtctgg tatcattttg
    68221 gcaccataca agttcgtacc tggattaagg gaaatgccaa atgtccacag tagtggatat
    68281 aaaatgatga caaacatcat cgctataaaa ctgtaaatac cgattgcttt taatatgttt
    68341 ttcttctttg tcatcttata aacctccctc atctttaaac gtacttgtac gtctgaattg
    68401 aataaatgcg acaatagcaa caataaatcc aataattaat gacacaactg cacccatgtt
    68461 gaagttgtta aactcaaatg tcagattata cacccaagat atcaagatat ctgtactacc
    68521 agcattctgc cctgacactg gtggaccgcc tttattaaat agataaataa gattaaaatt
    68581 attgaaatta cctgcatatt gcataattaa caatggcgct gtggcgtaaa tgacatgcgg
    68641 gaatgtgatg tttctaaact tttgccaact agacgcacca tccatatctg ctgcttcgta
    68701 ccaatctgat gaaatacttt gcagtactcc agtgaacagt gcaaagacaa atgggaatcc
    68761 aagccatact tgaatgccga ttaatgccac ttttgcccaa aacggatcac ttaaccatgc
    68821 tggtgctaca cctaataaag gttgcaaaat atcattattt atcgcaccaa attcatcatt
    68881 aaataacgct acaaatatta aaattgtcac aaatgatggt acagcccaag gtaggattaa
    68941 cacagtacgg ataaatttct tacctttgac gacagggtga tttacaataa ttgccaaaaa
    69001 cagccctaat gcaatttgaa gtgtcgttgc aacaagcgtc catactaatg tccaagtaat
    69061 aacactgaaa aatgttttac gccaaacgcc aattgtgaat aacgttttaa agttatctaa
    69121 accaacccat tctaatgtgt gtctcggagg cgcgttgtat aaattgtaat ttgtaaatgc
    69181 tactccaaac ataaatatta atggaaatac aactacaaat atcaataaga atgtacctgg
    69241 tgagattagt aagtatggga acgtcttgtc ccatgttgcc accatacgcg ccttcggatc
    69301 ctttatttcc tcattgcgat taaatcgttc agcattacga tatgcatcta aaatattaat
    69361 gatatatagc atgattgcga aagcaacgag taagatagaa ataatacctt gtgcaagtaa
    69421 gacacgagaa tcgtctaact taggtactgt ccctaatgtg aacaatcccc aaaaaccaat
    69481 atttaaaaag ctataaaaaa cagaaataaa actgatgaaa aagataaaaa atatcgtccc
    69541 tttaatgggt cttttattat aaaactgtcc caaaccaggt ataacagata ataatgccgc
    69601 taatttaggg ttacgtttcg tcataactaa tctcctttct tatcattttg tgatggatga
    69661 agaatcttaa tattttgcgt tatatcattc gtcgcctcat ctaacgcttg tttaggattc
    69721 ttaccatttg aaataaatat gcttgcattg cccatcggtt cccaaacttg tcgcatttca
    69781 ggaatattag gcatcggttc agcatgacgt gcttgctttt caaacacttt taaatttgga
    69841 ttagatgatt tcacgtcaac acgtccagta atttcgctca tttcatctgt atatttttgt
    69901 aatgtatctt tactagtgat atacagcatt aaatctttag cccaatactt atgtttacta
    69961 tattcagata aataccaacc acgtacacct agaaatggtt tcataggttt gccaccatct
    70021 gtaggtaatg ttgttactcc taaatcttta ccaaacgttt cttgatattc attaatgttc
    70081 cacggtccag tgacaaattg tcctactttt ccttctttaa aaagaccaat catgacatca
    70141 tgtgttgctg ccttaggaag ataccctttg tcgtaccatt tttgtaatcg ttcagcattc
    70201 ttgacgacat gttttgaatt tagtcctagc tgatgaatat catattcact gccatttttc
    70261 ttgaaaatat aatcatcatt gccgaataaa aacggataat taaaatagaa atttttagca
    70321 tcaaataaca taccgtattg tttcttttta ctatcagtta gtttggcagc attagcttca
    70381 acttcttcta acgtttgcgg tgcatttttc actaattttt tattataaaa aagtgcggtt
    70441 gtttcaacga tagctggcaa tgctagttgc ttattgtcat aattcatcgc tttaagtgct
    70501 tgcttattga aacctttcaa ctcatctttt gataatttga tttcagcagc taagccttgt
    70561 agataggcac ttccagtatt atcatgtgct aagaaaaaga tatctggacc ttttcctgca
    70621 ggagcgtcta gcgaaatatt ttctagttga tcattttgac caatatttac aagctttact
    70681 ttgatgccag tttttttagt atattgatcc gtaatttttt tataaaacgc catttgcttg
    70741 tcgccatcca cccacatcgt aagttggtta ggcttgtctt tagaattatc tttattcaat
    70801 gctttatcaa tatcttcttt cgaacgatta gggccacatg cagttacgat taataacatt
    70861 accacggcta acgtgataca ttttaaaatt ttagacatga atactccccc ttagacgata
    70921 cgatttcctg ttttttcatc aaaaaagtga cacttattca tatcaaatgc tagtgtaatc
    70981 ttgtcgttcg ccatcacttg agttcttgaa tctaatttag aaatcaattc cattccttgg
    71041 aatgtgctat gtaccataat ttctgaacct aacagttcgg atacaactac ttcagattca
    71101 aattgtgtct ctggagaagt ttgaataaat attggttctt catgaatgtc ttcagctcga
    71161 atacctaaaa taatttcctt gtctaagtag ccagcagctt ttaacttttc aaatttttta
    71221 ttatgtaatt taaaatggtg tgttcctacc ttcaatccgt ccatttcaac tgtagcattc
    71281 aacatattca ttgctggtga gccgataaat tgcgccacaa atatgcaatt aggggcatca
    71341 tatatttctc taggtgtgcc gacttgcata atgtcgccat ctttcaaaac aacaattcga
    71401 ctagccatcg tcaatgcttc agtttgatca tgtgtaacat aaattgtcgt agtattaagt
    71461 cgcttatgta atttcaatat ttctgtgcgc atttgtactc gaagcttcgc atcaagattc
    71521 gataatggtt catccattaa aaagactttc gcatccctaa caatagctct gcccaaagca
    71581 acacgttgac gctgtccgcc agataacgct tttggtttac gaccaagata ctcagttaat
    71641 cctaatattt cagctgcttc attaactttt tgttcaatct cttttttatt tactttacgt
    71701 agctttagcc caaatgccat attttcaaaa acagtcatat gtggatataa tgcatagttt
    71761 tgaaatacca tcgcaatatc tctattcttt ggttcaacat cgttcatgcg ttccccatca
    71821 atataaaaat ctccagatgt gatagactct agtccagcaa ccattcgtaa tgttgttgat
    71881 ttaccacatc ccgatggtcc aacaaataca atgaattctt tgtcagtaat atgtagatta
    71941 aaatctttca ctacagtatt gttgttatca tacgtctttt taatatgctc taactttagt
    72001 tctgccatgt tatgcctccc atactttgtt tacagtttga ttgtgcaata cacttcgtga
    72061 aaacgtttgc acaaatactt acataaatca tatattcagt cattattaat gtcaatcata
    72121 aattataaac gtttacatta ctgtcagaat taaactttta tacagaaaat tgatatagtg
    72181 cacaactatt ttctagtgtg acaataatgt tttttatgtg cgatatttca ctgccaatgc
    72241 taacaacctt gtcttacatt ttaagtaata tctaaatcaa acaagtatga cttagcatta
    72301 cgattttcat tgaaaaaagc aaccattatg taagtatcat actcacacaa tgattgctta
    72361 attttttaga ctgcgggcac ccttctataa ctacaaatca tataggctac gttccccatc
    72421 aggtaactga tcgataaacg gttttggatc ttctgcatat gcattaccta cgccaccctt
    72481 cattctttga aaatgtaaat gtgcgcctgt cgtttgtata cctgtattgc ctgaatatgc
    72541 aataatatca cctgctttga ctcgatcacc tactttgaca ttatatttgt ctaagtgtag
    72601 ataccactgg tgatattctc cattgtcttc ggcaatctgt aataccttgc cgcccaattc
    72661 attattaaag atacgtgtta ctttaccatt cgtcggcgct ttaattggtg taccttttgg
    72721 caatgcaaaa tcaatgccat aatgcttacc atcaaatggt gaatgttgat atttaccaaa
    72781 agtctcagta atccgactcc ctctaaaaaa gtcttcccat tttgagtgtc cttgtccttt
    72841 atgattttgt gtcaatttat cggtatattg gttaaaccat ttttgaatgt catctatata
    72901 aataatcgta aataatagtg aaagaaaaat gataattgtt gccaaaatac gttttggtcg
    72961 ctttgtcata gtggcatcca tccttcatat attttgggta ttaagtatat attctaaatc
    73021 aactatttca taattaaatg cactcatact ttagtagtac tgccaaatat agatgaagaa
    73081 aatgatggta atttgaatat tttgattgat attaaatttt atatcgagta taataattat
    73141 acttaagaaa ataacagaaa cagaggagaa ttttcaaatg gcaaaagtat tatatattac
    73201 agcacaccct tttaatgaac tggtatcaaa ttctatggcg gctggtaaag catttatcga
    73261 aacatatcaa caacaacatc ctgatgatga agtgaaacat attgatttat ttgaaactta
    73321 tattccagtt attgacaaag atgtattaac tggttgggga aaaatgagta atggcgaaac
    73381 gttaactgat gatgaacaaa tgaaagtttc aagattgagt gacattttag aagaattttt
    73441 aagtgcagat aaatatgtat ttgtaacgcc tatgtggaac ctttctttcc cacctgtagt
    73501 taaagcatat attgatgcta tttcaattgc aggtaaaact tttaaatatt ctgctgaagg
    73561 accacaaggt ttactaactg acaaaaaagt attacacatt caatcacgtg gtggatatta
    73621 tactgaagga cctgctgctg attttgaaat gggtgaccgt tatttaagaa caattatgac
    73681 attcttaggt gtgccatcat atgaaacaat cattattgaa ggacacaatg ctgaacctca
    73741 taagactgaa gaaattaaag caactagtat taataatgct gaaaaattag caacaacttt
    73801 ttaaattttt agttacactg tgtgacgtct caaacgtcat gcagtttttt attgtatctc
    73861 ttttccgctt tttataaata tctattattt tcataaattt aaaatttgat attcacttta
    73921 atactgatgt aaatattttt caaaatatat tattatagtg ttaatgaagt attttgagaa
    73981 acggtgggaa tgtatgaaag cacataaaat tttctggtta aacttagcag caattattat
    74041 tatttcaatt gtagtcagtg gcgatatgtt tttggcaatg aagtgggaac aaattcattt
    74101 gaaagatggt cttaaaaaag tactaagtac gtatcctatt aaaaacttag aaacgcttta
    74161 tgaaattgat ggtcacgata atccccatta tgaaaataat gatcaagaca catggtatat
    74221 agaatcctct tattcagttg ttggatcaga tgagctttta aaagaagacc gtatgttgtt
    74281 aaaggtagat aagaacacac ataaaataac tggtgaatat gacacaacta caaacgataa
    74341 aaaaaatgct actgactcga catacaaaag ttatccagta aaagtagtta ataataaaat
    74401 cgttttcaca aaagacgtaa aagatcccgc gctgaaacaa aaaatcgaaa acaatcaatt
    74461 tttgattcaa agtggtgatt taacaagcat tttaaatagc aatgatttga aagtcacaca
    74521 tgatcctacc actgattatt ataatttatc tggtaagttg tcgaacgata atccaaacgt
    74581 taaacaatta aaacgtagat ataatattcc taaaaacgca tcaacaaagg tggaattaaa
    74641 gggaatgagt gatttaaaag gcaataatca tcaagatcag aaactttatt tttatttttc
    74701 aagtcctgga aaagaccaaa tcatttataa agaaagcctt acttataata aaataagtga
    74761 acattaatac ttatgctgta attatagaaa catccaaatc atctattaaa atcctatatt
    74821 ataaaaacac ctcacataac tcgttcaact gtaccaaacc acattacatt agattttagg
    74881 ctaactattg tgatgtacat caaaaacgaa tttgtgaggc gttgtatatt ttacaaaggt
    74941 gactagcgtt tcgtatagca tttccaacat tactacactc aagcgtcacg ctaaagttcg
    75001 aaatcgaatc ctttcattca acaaaagctc atatccacta caaacttcat atcaagcgta
    75061 taaactatct tgtgatacta tctcgatcat atctatagta tgcatttgtg ttccgtttca
    75121 ctgaagtata tgtatcatca gttaagtata aaccgtcatc cttcaatgtt acttgataag
    75181 catatttccg tgctaaccag gcaatatcta tataattttc tcctgcgttt tcataacttc
    75241 ttaaatcttc aatatgtgca ctaacttcag ggaaaatgat tctaacaaca ctttcatcaa
    75301 cccaatattt gtcatgcatc catcgcactt gatctgccaa taaaggtaac tgcacatcat
    75361 tgaaatatag acgaaagccg tcactatcat acatttgccg atatggtaat ggctgttttc
    75421 taatcactaa cacctcgcca cccattacgg tgccttctct agtatcatca cttccacccg
    75481 aagcttcata cgttgttggg tcaacctgta gtccatgtac atctccaata taagcatctg
    75541 gtttatgttc cattgcatgt ccatgtgcaa tcaatgctaa tattgtagat tgtgaaaatt
    75601 gaggctccca ttcaatgcga ttaggatggc tactataaat tctaggttca tctatagcct
    75661 gctgaatatc catgccaaac actaatacat tgattaatgt ttgcgcaaca ctagcaatga
    75721 tacttatggc accaggtgca cctactgtta atattggctt cccgtgatac atcacaatcg
    75781 ttggagccat gttacttagt ggtcgtttat atggtgcaat ttcgttaata ccaccatcta
    75841 ctacatcaaa gccatccatt gtcgtattca ataacacacc gtagcctgga atcgtgatac
    75901 ctgaaccata aatcatacca attgatgtcg taaatgaagc aatattacct tccttatcaa
    75961 tcacacaaaa atgagttgtt tcggtatgat tttcttcaac atctgtatga ctaatgcaat
    76021 cagacacaac accatgctct atatcaatat ttgctttatt gctatcaatg agcgtactgc
    76081 gtgcttttaa ataatcatca tcaattaatg actgtacagg cacctcatga aaattatcat
    76141 ccgccaagta ttgcgcacga tcactatatg ctaaatgcat cgcttgtatc aaatgatgca
    76201 agtaatcaac agatcttgga cccatagatg gtaaatcgac atgttctaat aacttcaata
    76261 tttgaattac cgtgataccg ccagaactag atggtcccat tgaataaatg tcatagtctt
    76321 taaatgttgc actgattggc gctttaatct gaatgtcata tttggctaga tcctctaaag
    76381 tgattgtccc accacatgct ttgacaacat tgactaattg tttcgcaatg tcacctttat
    76441 aaaatgcatt aaacccttgt tctcttaata tttgaaatgt cttacctaat tcgggttgta
    76501 caatccaatc accttcacgc caatattgat tttcatgcgt aaatacttgt gccgtttcat
    76561 gatactttgt caatcgtgcg tgttgctggc gcgaatattt ttcagtagcc caattggctg
    76621 catgaccttc aatggctagt tcaattgcag gattaattaa atcttccaat gacaatttag
    76681 cataacgctt gtgaatataa tcaaacagct ttggaattgc tggcacagcg acagttttac
    76741 catgtgtagt catatcaaaa aatgatttat attcgcctga atcatctaga taaaattgtt
    76801 tgtctacatg ttcaggtgct gtctcacgtg catcaaacgc agttatactg ccagtacttt
    76861 gctcataata tagcaaatac ccgccaccac caatacctga tgcaaatggt tctaacacat
    76921 tcaatgccag ttgaattgca atcactgcat ccatggcgtt gccaccttga tctaatacat
    76981 ccttaccaat tttagccgca agaggatgtg atacggaaat taacccttct ttagatgttt
    77041 ttgtctgttt gtcatttaag ttaatgacca tactatatcc tcctactttc tgttaaatat
    77101 ttaaaacatt attgattaat ggctttttct actttttcta aatcttgacg ttgctcgtta
    77161 ccagtatcga caagtggtgt aatcggtgat gcaattttaa atttatcgcc acgataaaac
    77221 ttaataaatt gatcctgatc tatcgcatta actactgctt gtctcaagtt tggatgcgtc
    77281 ttaaatatac cttttttaat atttagcatt aaaaagactg acttgcgtcc atttttgcga
    77341 ataatgctta aatttttatc cgacttaatt aaatcaaaat gtttttgatt cacatctgcc
    77401 aacatatcaa ttgaatgatt tctaagttct gacaatgcat tattcgggtc accattaaac
    77461 ttcaatgtaa tatttttaat tttagctggt ccataactac ctttttctgt ttcgttgaat
    77521 cctggattac gttgaaacgt tgcttgatat gcatttttct gtgtcataat gtatgcgcca
    77581 cttgcataca gcgcattttt cccatctgaa tttgcaggaa ttgtactgct atccccatat
    77641 ccttttggat attcttgatt tacttgatta acaaattttt tagataaaat gcctgccgaa
    77701 gagtgtgtta agtaatttac ctctcgaggc atcgattgat ctgtcgtaat tttaacaatt
    77761 tgataaatac cgtctttatt atttactttt tgaccatctg tcgttaacga tttgacgtta
    77821 taagctttaa tcaacttatc atagattgat ttatcgtcct tgtctttctc tttacgcaac
    77881 tgatcgatgt cctcatcttt taatatcttg atgtcattta tatgtttgtg catattgtaa
    77941 gtattattgt taggcacaga ctttttatca cgtgctctat ctaaagaaaa cttaacatct
    78001 tcagccgata cacgctctcc agtattacgt gcttgtccat tgaccacttt cgcaaaataa
    78061 tcatcatctc ttaacaagaa ataaaatgct ttattgtcct tattcacagc ataatcatga
    78121 cttaacgaac ctttcgttgt taaatgatca ttttcatcta ataataataa ccttgtgtac
    78181 atattcatat taattgaata tactgacggc gcaattgaac gtattggatc caatgtagga
    78241 atttcaccat cttgttgtgt catcacaagt ggccgcgtat ctcgttctct actattgttg
    78301 taatcaaatt gttgccatat taatgcacgt gaatttggca atccaacact atttttatct
    78361 aacactttat tgtcatatac taaattcttt tttgatccat ataaaggcgc catataccct
    78421 ttatcaaata caacttcatc ttcaatttgc ttatatgttt gtttaacatc tgcttcattt
    78481 tgagtagaag ctttatttaa caactggtct acatgtttat ctttcaataa actatttgat
    78541 cctgtagaac taaataatgc cgtcatagca tagttcgggt caccaaacac tgtcatccag
    78601 tcatcaattt ggatatcata attgccggct tgacgttgtg tacgatagct accataatct
    78661 ggttggatat tcatcttcac gttaaatcct gcattttcca attgatcttt aacgatattc
    78721 atatcatttt cataacttgc ttgtcctagg aaatgtattg ttggtcgctc gcctttcact
    78781 tcaactttcg atgacttttg agccacttct gatttcgtag ggacaccaca accacttaat
    78841 accaacgcta aaactataat tgcgatacta atgattttct tcacatctat ccctaccttt
    78901 ttaatgaatt cttggatcta gtgcatcacg cactgcatca cctataaaat taaatgctaa
    78961 aacgacgaac ataatacaaa caccaggtac aatagctaaa ttactgtgcg tttccaagta
    79021 gttactaccg gtacgtaaaa tgttgcccca ttcagctaca tcaggtgcaa caccaagtcc
    79081 taggaaactt aaactacttg ttgttaatac aaccacacct atatttaatg aaaaacgtac
    79141 aatcataggc gcaatcgcat tcggtaaaat ataacgccat atgatattcc aagtgttttc
    79201 accagtgata cgtgctgcat ctacatattc catgcgttta atttctaaaa cactggcacg
    79261 cattgtccgt gcaaatgatg gtatattacc gatacttaaa gcaataatta aatttggaat
    79321 acttgctcca aatgatgcaa taattgccac cgctaacaat aatgatggaa ttgcaaacac
    79381 tacatctaaa attcgcatta ttaaattatc aatatgatta aaataacctg cgatagtgcc
    79441 tagtaacaca ccaaaaataa ctgcaataac tactgaaata attgaaattg aaaatgtcag
    79501 cttcgttcct acaactacgc gtgtaaataa gtctctaccg aaatcatcag taccaaacgg
    79561 ataggctaga ctcggtccat gtaacagtgc attgaactga tttttagtag ccaatgtcgt
    79621 atcaaatgta aattgtgaca caattgataa tgtcagcatg tagactaaaa taagtaaccc
    79681 gataatcgca atacgatgtc tagtagtttt tcgtataaac gattcccacc cgttataact
    79741 atgtatttgc gatgtacgtt ggtaacgtct aatacttaca aacattaata atgtaaatac
    79801 gttgcctgtt aatgtcatca acaataacaa cacttcgacg atacgtcgcc ataggtcatg
    79861 atgcttccat gtttgttccg ttgttaaaat aataattaaa atgatggtta aaacgattag
    79921 caatgtttca gcaatataga acgtatcggc cacataacct ttaaaaagat ttaatgcact
    79981 cgttaatata actaaaatat aagttgctat ggcgtaactt gcgaataatt ttaaggaagc
    80041 tatctttgaa ttaagttgtg ccatatgcct cacttccttt cgttgatttc actacgtaat
    80101 tttggatcga ttaaagcata aaatatatca ataattaagt ttgctaaaga tattacaatt
    80161 gatatatata cgaccccacc catgactgct ggaatatcag gtattagttg tttttggacg
    80221 atataacgcc cgataccatt aatgttaaat acttgttccg tcactgctga accgcctagt
    80281 aactctgcca ctagaagacc aactaacgtt acaattggaa taatggcatt tttcaaaata
    80341 tgtttaataa caacttgtgt cgtcgataat ccttttgcat aagcagttaa aacataatcg
    80401 ctgcgcatta cttcaagtac agaagacctt gtcatacgcg tgatagaagc agcaatactt
    80461 gttccaatga caagtacagg taaaatcaac gatattggat gttctggcat ataagatggt
    80521 ggcaaaatat ccaatttcaa tgagaacgct aaaatgaata atagcccttg ccagaaactt
    80581 ggaatagata aaccaattaa tgcaattatc attaacgtga tatcaagcca actatttcgc
    80641 ttcatcgcac tgataatacc aattggtatt gcaataatta atgccaccat tagcgctaat
    80701 actgcgacaa ttattgtaat tggaattctt tcgccaactg ctttagtcac aacctcattc
    80761 cctttgtaag tcgtacctaa gtcaaaggta aaaacaccct tgatggtatc ccacaattga
    80821 ataaaataag gttcgttaag atgatgtaat acattgaatt gatgtatctg tgcctttgtt
    80881 gcattttgtc ccagtatgct ataagccgca tcaagcggtg aaaaatacag aatggtaaac
    80941 acactgacaa taacaccaat gatgacaatc acagccatga caattcgttc aaaaatatat
    81001 ctaactaatg gctgtaaata aaaagtcaat aagatgaaca tcggcaaggc caatatcact
    81061 ttgatcatga tgaacttatg aaataataca ttttcaaagt atgttgaaaa atgtgcttgt
    81121 tcaatattct ttgaactcgt attagaactt tgtgccttga atatttttaa tgcttcttta
    81181 tgtatttgtg tggatgactt ttgctgcgat aaatatttat atttttgatg taacgcctgt
    81241 tcaatttctg aaatttcaga attattagcg taaaaatttt tcctcttagc agaaaagaaa
    81301 aactttatca ctgcatataa aaatattggc aagcttaata ccgataatac aaacttgtaa
    81361 aatgccttgt gatacaacga cttaaaagat tctaaataag taattatgat aatcactcct
    81421 tgtaaaataa tcttgagtag attactatga tatacaaaag tatagaataa atttacacat
    81481 ttgtgaatag ggaggcacaa catcatgtca aatttattag aagtcaacag tctgaatgta
    81541 caattcaatt atgatgaaac tacagttcaa gcggtaaaaa acgtctcttt cgaattacga
    81601 aaaaaacata tcctaggtat tgttggtgaa tcaggatcag gaaaaagtat taccgctaaa
    81661 tctattttag ggctactacc agattatcca gatcacacat taacaggaga aattattttt
    81721 aatgggcaat cgttaaataa tttatcaact tcagcgttac aacaaattcg aggtaaggat
    81781 atttcaatga tttttcaaga tccactctct tcgttgaatc caagattaac gattggcaaa
    81841 caaattacag aagtaatatt tcaacataaa cgtgtatcta aatctgaagc aaagtcgatg
    81901 acaatagaca ttttagaaaa agtaggtata aaacatgcaa ctcgacaatt tgatgcttat
    81961 ccacatgaac tttctggtgg tatgcgtcaa cgtgtcatga tagcaatggc attgatttta
    82021 aagccacaaa ttttaatcgc agatgaacca acaacggcat tagatgccag tacacaaaat
    82081 caattactgc agttaatgaa gtccctttat gagtacacag aaacatctat tatttttatc
    82141 actcacgatt taggcgctgt gtatcaattt tgcgacgatg tgattgtaat gaaagatgga
    82201 agtgtcgttg aaagtggcac ggttgaaagt atttttaaat cgccacaaca tacctataca
    82261 aaacgcttaa tagatgcgat tcctgatatt catcaaacgc gtccgccaag accgttaaac
    82321 aatgatattt tattaaaatt cgatcgcgtg agcgtggatt acacatcacc gagtggcagc
    82381 ctataccgag cagttaatga tattaacttg gctattagaa aaggcgaaac attaggcatt
    82441 gtcggtgaat cagggtcagg gaaatcgaca ttagctaaga cggtcgtcgg tctaaaggaa
    82501 gtgtcagaag gctttatttg gtataacgaa ttaccattaa gtttatttaa agatgatgaa
    82561 ttgaaatctt tacgacaaga gatacaaatg atttttcaag atccattcgc atctattaat
    82621 ccaagattta aagtcattga tgtgattaaa cgaccactaa tcattcatgg gaaagtcaaa
    82681 gataatgatg acattattaa aactgtcgta tcgttgttag aaaaggttgg cctagatcaa
    82741 actttcttat atcgctatcc acacgaatta tctggtgggc aacgtcagcg tgtaagtatc
    82801 gcgagagcac ttgctgttga acctaaagtg attgtttgcg acgaggcagt gtccgcttta
    82861 gacgtttcaa ttcaaaaaga tatcatcgag ttattaaaac aattacagtt agacttcggc
    82921 atcacttatt tattcatcac acatgacatg ggtgttatca atgaaatatg tgatcgcgtt
    82981 gcagttatga aaaatggcga aatcgttgaa ctgaataaca cagaagatat tatcaaacat
    83041 ccgcagtcag actatgcaaa gcaacttatt tcagaagtag cagttattgc taaataaaag
    83101 tcatgcgttg tgcaacttta tcactgtatg gtctgaaata aattgcgcga cttctgatgt
    83161 gttatgttag atgactttgt catactaact atattgtgct aagttagggc tcggcaccat
    83221 atcaagtttt aggtgctttg ccatgattta agagtcaccc ccatactttg ggcattttaa
    83281 cgccagaata aatcccccgc cactatgtga agtgcggggg attatttata ttttattaga
    83341 atattcagat ttttgagtgt gtcaacttag cttagtcaat gtatatttaa cgtcacttac
    83401 tctttttctt tcataattaa cacattcaaa taaactttga tcaaaaaaca caaagttaaa
    83461 agtaccatct tgtaatatgc tctcatacat tatcccgtca tatttaaggc ttcgaatata
    83521 atcagctaaa tattgaaatg gcaaataatc tattccttgt tcatcgcttg gatttgttat
    83581 tcctttatga atctttttta atgtttggta atttacaaaa tactttctaa atccatcatc
    83641 gccagctttg attgcattac tagttaaatt agttaaattc gcaattttca atttctcttt
    83701 tgtcacgttt ttttgtaact taaccttacc tatataaata atgtcattat gcttaggttt
    83761 aacttcttct atactgacct gttcttttgt actaaggtat aatacgctta tccatttaga
    83821 attcaatctt cctgccgttg caaatccctt tggtggtgac attagttcac ttttctctgt
    83881 aatgaactta actattctag atctatataa tggttcaaat ctttctctaa attcctcaat
    83941 actatagtaa ttagtagtga tatcgagaaa gaacgctaaa ttctctaaat tgatcatatt
    84001 attatgaaat ctatttttat acttcaagct ctcacaaaat ccatcccagt cattatttgc
    84061 tacaattaga tttttatttg tatatttttt atcgtttatg attttagcgc ctactaaatc
    84121 ttccaacact cgtctatcta aattttcatc atctttaaaa agttcattta aaatacaact
    84181 tatttgagct tcctcaacat taaatatact ccagtcgtct tttaatgcta tttcaatctt
    84241 tttaccttct tttgggctaa aagtatctgg taaatttata ctaatatcat ataattctaa
    84301 tgctggtctt aaataatctc taataagttc taatttatct atgtccttag tcgtatcaaa
    84361 tattttaaca ccaagatgat tgttatcaat atcacaattg tcaaatttgc tattatcatt
    84421 tgcaatgatt tctacgattt cagtattatt aaaacatttt tcacatattt tcattttgag
    84481 actccaagta tctattcata atttctaggt gatgcatgat agataacctt ttaattaaac
    84541 ctaatcctgg atacttatta ttttcattta attcttcaaa ttgtccaagc gcataagatc
    84601 tatttttaat atctaagttt tttgaccatg ttactaattt atctacagcc tcaaaaaact
    84661 ttttacctgg atttgatcta tcattattag aatcagagac aaaatgctta actcttagct
    84721 cattagcctc atcaaaatag acaatatgta tcgcaatagc taatggcgaa aagccaccgt
    84781 ctacatattc tccacctata acagaatagt ctgaaaatgc tacgtatcca tcttccttat
    84841 aataaaggtg atcgtcgcta taaaactcgt catcattatc taaataatca acattacgac
    84901 ttagtttatt aaaaggatcc ataatgatgc ctttgtttgg aatattacgc aatttacgtt
    84961 taatgtgtct atcatctggt acaaaaacca tttcaagttt atttttatct ccaaacattt
    85021 cccaatcatc tacacttgtt aaaatagcta aactattact tgaaaattgc tgtttcaacc
    85081 tatcattgcc ttcatcagaa ggacccaagt aagctttttg aataacactt ttgttttttg
    85141 ttattatttc agttaaatgt gcaacagttt cgttactaat ctcttcttca gttaactttg
    85201 aatttactac taaatttata gagaatgctt tttcaccaca gtattgcaaa gtatttttaa
    85261 atgtggttgt atatttaatt ggttcaatta taggttgaat acaatcacca atcaaacctt
    85321 tctctaacaa ttctctaatt gcaaatagtt cattttgttt cccacgcaaa taaggataat
    85381 acatattaat cctccttaag aaaatgatat agtttatttt tatctttctt tgtcattttt
    85441 gcgaaatata acaagaactt aatttcagcc ggcgctgcta aaaattcatc tttgtattct
    85501 ttcatgtttc ctcttttttt caactcagaa atcatattgt tatgcagttt cgtcattggt
    85561 atttctttaa acacgtcaaa taacacatca tactctgtga aatcattata agttggcaca
    85621 tccatatgat tttgtgcaat aactcttttt ctttcttctt ttcgtaaaaa gttgtacatc
    85681 gcttttgtgt ttaagagact attgttttct ttaggttttt gaacttcact cagtgtattt
    85741 ctagttgtta acactaaaat tccaactgtt gtatctttgt atctagccat aactttattc
    85801 agatgtttgt catttgtaat aactacgaca taattaaaca cttcataata atcattaatt
    85861 tgattatcta atctatccag cttatctaat tctgttttaa tctcatagac aacgcctttg
    85921 ccgtttaaca atataaaatc agcaatactt ttccctatgg gcatctcaga aagtgcagta
    85981 gttgtattaa tagaatgtcg tcctagaagg agtttattaa gtattgtgtt tttgtaaaaa
    86041 tattcgttac gataagactt tttaagatag ttatataaag atttcatctt ctgtattaca
    86101 ttgatatttt taggtccctg tatataaaaa tcatatgcct catcaacaac atcactttta
    86161 tttttgattg caatttgatg taatatcttt tgactaaaaa cacgattaat catatttcta
    86221 ttatccatag ctacgcacct ccttcaacat acatttaata cttatcctgt taatattata
    86281 aactatttta aatgcctata gacattattt ctatacacat acgattataa aattgtattg
    86341 aaaccaaatg atggttgcca aacacatggt aactaacaaa agatagaaaa taataatgcc
    86401 ccctacacta atctagcgag ggggctgaat cattacacac cgtatttttc agttgtttct
    86461 gccacgaaag attcaatggc ttttcttgct ttacgctttt ctttcaatgg caaatcacca
    86521 atcatttttt taaggtgatg tgggtttaca acaccactat actggtagtc atttgaaatt
    86581 gtttttaggg cttgttcatc gatagatctc tctccagcaa atcctttgaa ctccgcttct
    86641 tttttaatac tttcgaaatt aacatattct tgatcgatat catcatcctt atttaaagaa
    86701 ggtacaacat tgtcgatgaa ttctctaatt agatctcgtt ttaacctcaa tgtcggatca
    86761 tctgcatgat ctaaaatgcg tctaatttgt tcttggttac gacgttgttc cgctttgtct
    86821 tcaagatcaa tttgtctcaa tatattcata atataattca cattaatcgt atcattacgc
    86881 atcatttcta tttcgaaatc aatatcattt aaaatggata ctttattttt ctcagccgtc
    86941 gctcttttta cttgatcgta cacagctaaa tatttacttt tatagtcttc attctcttgt
    87001 tcatccattc caatttcatc aattgtaaac tcaaactcgt caaatgcttt taaacgtaat
    87061 attattttag ctaataaacg ataagcttca acaaagcgct ttagctcttc ttcatcttga
    87121 atgtcatcaa ccatgtgtgg tgtcggcaca atcattttaa gctcacgata agcgtccata
    87181 aattcttttt tatactcttc ataactgcgc attaaaattg tatccgtatc atttgtttgt
    87241 gagaatactc tcagtgcatc gtctgtctct tttttcaagt cacgatagtt tacaatttta
    87301 ccaaatggct ttgattcttt ttcaacccta tttgtacgtg aatacgcttg aattaaatca
    87361 tgatacatta aattcttatc aacatataaa gtgttcagta ctttactatc aaaaccagtt
    87421 aagaacatat taacaacgat taagatatca attttactat ctttaacgcc ctttttaacg
    87481 ttttttgaaa tatgattaaa atactcatta gttgtgtctg ttgaaaaatt cgtctcgaac
    87541 tttttattat aatcactaat cattatctct aatttttcac gtgaatgata tggcacttca
    87601 ccatcacgat catcttcatt aggtttaaac gtaaatatac cagctatcgt taacggttgt
    87661 tccaactttt tgttaagtcg cttaaatgtc tcataatatt taataagcgc gtgaatactt
    87721 tggactgtaa atatacttga atattgacga ttacgtgtat atttatcatg attattgatg
    87781 atatgtcgtg ttactaattc cacacgttta tccgctaacc atacttcttc cgtatcaatt
    87841 gcttcaacca tgctgttatc ttctgctttt aaagctttat ttttaaaagt attaatatag
    87901 tcaactgaga aaccaagtac attaccatca tgaatggcat ctctaattaa atacgtatgt
    87961 aagcatctac cgaaaatatc tgcagttgtt ctaccatctt gactactatt ttctggaaaa
    88021 cgtggcgtac cagtgaatcc aaagtattgg gcatttttga aatgttgttt aactagacga
    88081 tgcatgtcac caaattgact gcgatgacac tcatcaataa taaatacaac tttattcgtt
    88141 ttatactgtt ctaataaagg ggcattccct tgaatcgctt tagccatttt ttgaatcgtc
    88201 gttacaataa gtggcaaact tttatcattt agttggcgta ccagttgcga ggtattaaaa
    88261 gttttgtcta cagcaccctt agcaaattta ttaaattcct cttctgtttg actatccaag
    88321 tctttacggt caaccaaaaa gataactttc ttaatgtcat cttgctgtga taaaatctga
    88381 ctcgctttaa aagaagtcaa cgtcttacca cttccagttg tatgccatac atatccatta
    88441 ttccctgtct cagtcgcttg ttgaataagt gcttctaccg catacacttg atacggacgc
    88501 attgccatca gtattctatc tgtttcatta ataatcatat agcgcgatat catcttagct
    88561 aattgacaag gtctcataaa tgactcagca aacgattgca atgtattgat acggttattc
    88621 tgtttatcac tccaataaaa catgtgactc ttcaatagtt cgctatcatt attagaaaag
    88681 tatcgcgttt caacaccatt actaatgata aacatttgta tgtagcggaa taagcctgtg
    88741 taattttgtt tgcggtaacg ttttacttgg ttaaacgcct cattaatatc aatacctcga
    88801 cgtttcaatt caacttggac aaggggtagt ccgttgatta atatcgttac atcataacgt
    88861 gctttatatg tatcctcgac agatacttga ttcgtcactt gaaacttatt tttacaccaa
    88921 cttttcgtat ctaaaaacga caaataaatc tcagactcat catcacgtct aagtggtaat
    88981 ttatcacgta aaatacgggc actctcgaaa atactttttc catcaatcat cgttaacaga
    89041 cgttgaaatt ctttatctgt taagggattg ccttctaatt tgtccgcatg acgctcattt
    89101 aaaatcgttc taaaattatc aagcaattgc ttattatcac gtatcgttac tctttcgtaa
    89161 cccaattgtt caagttgatt catcatttca ttttctaatg cgtattcact ttggtatgcc
    89221 attcatatcc ccttccatac actttctatt gctctaaata tatcataaac tttaatgaaa
    89281 aatgtttgtt ttttatcttc aaacgtaaat ttattctaat tttattgtct tatcttttaa
    89341 tatttgtctt tgaggtaagt cgtatactaa aatttgaata caaataatca aatcattgat
    89401 aaattttttg tctacgatta atggagggac ttgaatggtg ttaattacct atcaaatcat
    89461 tttatttttt attattagtc taagttacta tttaacttta aatcattaca tggcagtcac
    89521 tgtaggtaac ttcacttcaa tattcggcat gttcgcagcc atactcttta tgtactacta
    89581 cctactctat aaaagtcccg aatacaatca acgcaaacga tttaaacatt tcattcatat
    89641 cactaatttg ataataattg cttttagcac cttcgtatta gttcatttag cattaaaatt
    89701 attcttcagc atttaatttc catctatgaa aaaagcaaag ctcaaatctg aactttgctt
    89761 taatttgtca cgcctttatc attttcaaaa tagcctctat gccagtttta caaacttgta
    89821 gcaacaattt ttcatcaagc aactgaatca catcaaaaac ttcaattgtt tacgttgcaa
    89881 ctaactttat gttagaacgc acacaatatc taatgtttaa aatctatcgt cgcaagatgc
    89941 ttcctgtaat tatcaagtgc cattttcgat tgggttatac aatctagaat cgcatgataa
    90001 tttaatgcta caaatcgata gtacaatata tctaccgtga ataactgtgc aaatagtgac
    90061 gttgtagccg ccatacgcat ttcattttca tcagttctgc cataaatcaa tgcatagtct
    90121 gcaatttgag ccactggatt attagctgta ctagatatag ttatgatggg aatactgtaa
    90181 tgtgtggcca cctgtgcaat tgactgcaat tcactatgac taccttgatt cgtcacaaaa
    90241 atcatgcaat ctctatcatc atgcgtcgca aatgttgaca caagtaaatg cgtttcatgt
    90301 aataacctga catttaagcc aatacgagat aacttttgaa aaagatcacc aatagtcaaa
    90361 ctcgatgcgc caaatccaaa taaaaatatt gtcctggcat ttttcaacac atcacaaatt
    90421 gcatcaattt gcgcatccat aatattagta gctacaaatc gcatcgtatt cgttgctcta
    90481 gcaatcattt tatttttcaa agtttctaca gattcatttt caatcaattc taaatgtgga
    90541 ttggttgcaa tatcttcggg taagtatcga gatatcgcaa tctttagctc ttgaaaacct
    90601 tgatgtgtca ttttccgact aaatctaaca attgatgctg tactaacatt cgtaacatct
    90661 gccaaatcat tcacagtcat atcaatgatt ttatgtggat tctttaaaat gtaatcagcg
    90721 attatctttt ctgtcttcgt aaaatcactc aactgcttat caatgcgata taaaatattt
    90781 gtcatcatta atcacccaac aaatctgtct gtcgcatcgc ctttgtcgtt ccaaataaat
    90841 atgtacaaac gaatccacca gcatacgcag caagtaatcc tgcaatataa cctaaataca
    90901 tattatctga gattaatggt aatagtgaca caccacttgg gcctattgct ttggcaccaa
    90961 tatgtccaat tccacctatt acagcgccac caataccacc accaatacaa gcagttaaga
    91021 aaggtcgacc taatggcaaa gtcacaccat agattaatgg ttctccgata cctaggaaac
    91081 caactggcaa tgcacctttt aaagtattac gtaatgttgt gttgcgttta catcttaccc
    91141 aaagtgctaa tgcggcacct acttgtccag caccagccat cgctgcaatt ggcaataagt
    91201 aagtagcacc tgattggtta atcatttcta tatgaattgg cgtaaaaata tgatgaagcc
    91261 ctaacataac taacggtagg aagcttgcac caatgataaa tccactaaat acgccaccaa
    91321 tactaataat tccgttaact actgaaacta aactgtctga aacaaaacct gctaatggca
    91381 taaagataaa gatagttaat agtcctacaa tcaacaatgc aatagtcggc gttacaataa
    91441 tatcaatcgc atttggcaca attttatgta atctcttttc gacaatactt aaaatccaaa
    91501 cggcaaaaat aacgccaata atcccacctt gtccaggttg caatggttct ccagtgaaga
    91561 cattcattaa aatattttta ccagcaatac ccgttaataa cgttgtacca ccaatcacgc
    91621 caccaagtcc tggtgtcgca ccaaattctt tagccgcatt aataccagtg aaaatagcta
    91681 agtatgctaa cataccgtct ttaatgacat taaatactgt tataagttgc gtaatccaag
    91741 cacctgaaat atagcctgcc accattaagt tactcagtac tgctgcaata ccaccaatta
    91801 atccagctcc aataaatgca ggaatcaacg gtataaagat attggcaatt gatttcaata
    91861 ctttattcaa cttaccattc ttttgttttg ctttatgcgc ttccttattc gcctttgctt
    91921 tatcagctgc atatgattta tagtccattt tttcactatc attgtgatgg tgtggtattg
    91981 ggtcacctag tttaacacca cttaattccg ccatatgatt agccacttta ttgactgtac
    92041 caggtccaac cacaacttga atgcgttcat cgtgtataac acccatgaca ccatcaatat
    92101 gccttagttc ttggtcatct actttattct catctaatac tttaatacgc acacgtgtca
    92161 tacagttcat gacactatct atattatcca taccacctac tgcagcaata attcgttctg
    92221 caagttgttg ttctttggtc atttaaatcc ctcctaaggt tgtctatctc tgattgctcg
    92281 tttaacaatg tcaccattgt ttaataaccg tcttgttgct tcttccttag aaatgccaca
    92341 catacccata actgtcgcaa ctttcacatc atgctcagat acctgatata acgccattgc
    92401 ttcatcatat gtgatagcac atatttcttg aataatacgc actgaacggt cgatcagttt
    92461 ttgattggtt gctttaacat caatcatgag gttatcgtaa acttttccga caccaaccat
    92521 tgtgatggtt gaaatcatat ttaaaattaa cttttgtgct gtaccagact ttaaacgtgt
    92581 tgaaccagtt aatacttctg gaccaacttt aacttctact ggatactgcg caatttcact
    92641 tataactgca tgttcattgc atgaaataga tactgttgta gcaccgattg tgttagcaaa
    92701 tgttaaaccg cctataacat atggcgtttt gccactcgcg gcaattccta taacgacatc
    92761 ttttgatgtt aaatctatat ttttcaaatc ttcttccgct aattttttgt gatcttccgc
    92821 accttctaca gccatcgtca tagcatgttg tccaccagca ataataccta taatttcatg
    92881 agggtcagta ttgaatgtag gtacacactc cgctgcatct aagacaccca accttccact
    92941 tgtacctgca ccgatataaa tcaatcgtcc acccttttta tactgtgcaa ttgttttttt
    93001 aattactttt gtcaattgtg gtattgcctt tcgaactgct aacgggactt gctgatcttc
    93061 tttattcatc gtaattaaag cctcttccac agtcatttca tcaagatgca tcgtcgcttc
    93121 attacgcgct tcggtcgtac tattttccat cacttcttac actccctagt tttttgaaaa
    93181 tcaaatgtat cattcggctc gatacaactt aacagtggta agtcttcttt aataatttgt
    93241 gcaacaacat tcacattgtc atgtgcacta agcgtttgtc tcacaatttg catttcgcct
    93301 tgataacgtc cgttattcaa attatcaacg gttactgaac caatgcgtcg ttgcgtcgta
    93361 aactgtggtt gaatcgaatg tggacatatt tgtcttgacg tttccgaacg aatgacattt
    93421 tccggattat ccgggcgtac tttatgacac atatcgaaaa ggtaagtcac tgtcgtatca
    93481 aacacttctt caatacataa cgtgaaatgc ctatgcttgc aaaaatctat aagttgtttt
    93541 gcctgcctca tttcaatcaa tgagtctcca actaacactt cagatacacc agtttcttgt
    93601 aataatttag ctgcaacgac aggatgacta tgtctcgttg cttcaattgt tggcaagcct
    93661 ttatgcaaag gacctcgcaa atcactccct acaataaaac catatatttg tgcctttgga
    93721 ttaaattgat aaatgagttc atttttctta ttgaccaagt caacagataa tcccgtatct
    93781 ggtcttggat aatagttatg acaaaatgaa agtaatgtaa aatcattcaa ttgttgatgt
    93841 aagcttgtta acaattcccg ggaaataata cttgcattca aacagcactt taaaccctgt
    93901 gccattatcg cttcgattgc ctcaattgat gtactatgat cgatacgaat cataaattgt
    93961 gcatcatatt gtcgaagatg gtcataaaaa gatggtgtta aaatagatgg attagcatct
    94021 atgaggtaag tcacttgttc atgttttaat aaattgagta gttttgtgaa ataatgatat
    94081 tttgtctcgt catcttcttc tggtatttgt acagatgtaa aaatcatttg gtaaccttgt
    94141 ttaatcattc gcttaatata cgcttcatct aaaggttgtc ctaaatacac tgaaaagcct
    94201 gtcaaagtag ccctccttaa caatataatt attaggaaaa tatagttgag ttgtgtaatc
    94261 gcttacattt tactataaga gaaaacacat tacaatatta atcagttaaa gcctgttcat
    94321 tgtaataatc ttacatattt ctgtcacaag ttaattatta caccatcaaa gattatcctt
    94381 tcttttaagt gctgataata gctgctactg ctggattatt acaataactt ttatacattt
    94441 tattcaggat tatcttatat tatgttttaa taataatctg tgaacaatta agagatttga
    94501 aattgaattt aataattgta ttgaaaacgc atacttcacc atgctaaaat aggagtcgca
    94561 aacaaataag attcaataag atgtgatggt aagctagata aactaacgta tcagttttat
    94621 atactactta gtcaattgct tcttttacat taattacata caccaacgtg ttactaagta
    94681 agattaggca tgagttaaat taagctgtga tggttaccaa cacagtctat ttgctcgtgt
    94741 ctttttttat tgaatcttaa ataataaata caactttgga ggttggacaa gtgaggaaga
    94801 aacttttcgg tcaattgcaa cgtattggta aagcgctaat gttacctgtt gcgattttac
    94861 cagcagctgg tctgttatta gctatcggta cagctatgca aggtgaatca ttacaacact
    94921 acttgccgtt tatacaaaat ggtggcgtac aaactgtcgc taaattaatg acaggtgctg
    94981 gtggtatcat ttttgataac ttgcctatga ttttcgcatt aggtgtcgca atcggattag
    95041 ctggcggtga tggcgtagca gctatcgcag cattcgtcgg ttacataatc atgaacaaaa
    95101 caatgggcga ctttttacaa gttacaccta agaatattgg tgatccagcg agtggttacg
    95161 ctagcatttt aggtatccca acattacaaa caggtgtgtt cggcggtatt ataatcgggg
    95221 ccctggcagc ttggtgttat aacaagttct ataacattaa cttaccatct tatttaggtt
    95281 tcttcgctgg taagcgtttc gtacctatta tgatggctac aacatcattt attttagcat
    95341 tcccaatggc attaatttgg ccaacgattc aatcaggatt aaatgcattc agtacaggat
    95401 tattagattc aaatactggt gttgccgtat tcttatttgg tttcatcaag cgtttattaa
    95461 ttccattcgg tctacatcac attttccacg caccgttctg gttcgagttt ggttcatgga
    95521 aaaatgcagc tggtgaaatt attcacggtg accaacgtat ctttatcgaa caaattcgtg
    95581 aaggcgcaca tttgacagct ggtaaattca tgcaaggtga attccctgtt atgatgttcg
    95641 gtttacctgc agcagcttta gcaatttatc acacagctaa acctgaaaat aagaaagtag
    95701 tagcaggttt aatgggttct gctgctttaa catcattctt aactggtatt acagaaccat
    95761 tagaattctc attcttattt gtagcaccat tattattctt tattcacgca gtacttgatg
    95821 gtttatcatt cttaacattg tacttattag atcttcatct aggttataca ttctcaggtg
    95881 gtttcatcga ctacttctta ctcggtatac tacctaataa gacacaatgg tggttagtca
    95941 ttcctgtagg tcttgtatac gcagttattt actacttcgt attccgattc ttaattgtaa
    96001 aattaaaata caaaacacca ggtcgtgaag ataaacaatc acaagcggct actgcttcag
    96061 caactgaatt accatatgca gtattagaag ctatgggtgg caaagcaaac attaaacatt
    96121 tagacgcttg tatcacacgt ctacgtgttg aagttaacga caaatctaaa gttgatgttc
    96181 ctggtttgaa agatttaggc gcatctggtg tattagaagt cggcaataat atgcaagcaa
    96241 tttttggtcc taaatctgac caaatcaaac atgaaatgca acagattatg aatggtcaag
    96301 tagtagaaaa tcctactact atggaagacg ataaagacga aactgttgtt gttgcagaag
    96361 ataaatctgc aacaagcgaa ttgagccata tcgtgcatgc accattaact ggtgaagtaa
    96421 caccattatc agaagtgcct gatcaagtgt tcagcgaaaa aatgatgggt gacggtatcg
    96481 ctatcaaacc ttcacaaggt gaagttcgtg caccattcaa cggtaaagta caaatgattt
    96541 tcccaacaaa acatgcaatt ggtcttgtat cagatagtgg tttagaacta ttaatccaca
    96601 tcggtttaga cactgttaaa ttaaacggag aaggctttac tttacatgtt gaggaaggtc
    96661 aagaagttaa acaaggtgat ttattaatca actttgattt agactacatc cgcaatcatg
    96721 caaagagtga tattacgcct attatcgtga cacaaggaaa cattacaaac cttgatttta
    96781 aacaaggtga acatggcaac atttcatttg gcgatcaatt atttgaagct aaataatgct
    96841 tactataaac aggtgcgtat accttcataa ggtgacgcgc ctgttttttc tttgctattg
    96901 tattttgcag catcattgat agttcgctct ccccttaaat tttgaatttt aagatcatca
    96961 attaaagccc cccttcatac tcatttccta aaaaatatta attgttcact attgttagcg
    97021 ttttcacaac aaagtcaact tccttgacct tacactatat tcgaggctat cattttaagt
    97081 gtaaatatag agaaaaggtg gcttttttta tgaaacaacg cattggagct tacttaattg
    97141 acgctattca tcgagcaggc gtcgataaaa tttttggtgt tcctggtgat tttaatctcg
    97201 cttttctaga cgatattatc agcaatccca atgtagattg ggtaggaaat acaaatgaat
    97261 taaacgcaag ttacgcagcg gacggttatg cccgtcttaa tggactcgct gcattagtta
    97321 ctacatttgg tgttggcgaa ttaagtgccg tcaacggtat cgcaggttca tatgctgaac
    97381 gcatacctgt cattgcgatt acaggtgcgc cgacacgtgc tgttgaacaa ggcggtaaat
    97441 atgtacatca ctcacttggt gaaggtacat ttgacgacta tcgaaaaatg tttgcacata
    97501 taaccgttgc acaaggttat atcacacctg aaaatgcaac aaccgaaata ccacgtttaa
    97561 ttaatacagc aatcgccgaa agacgcccag ttcatttaca tttaccaatc gatgtcgcaa
    97621 tctctgaaat tgagataccg acaccatttg aagtgacggc aactaaatat acggatgcat
    97681 caacatatat agagttatta gcaactaaac tgcatcaagc gaagcagcct atcatcatta
    97741 ctggacatga aattaacagt tttcacctcc atcaagaatt agaagatttt gtaaatcaaa
    97801 cacagatacc agtagcacaa ctttcattag gaaaaggtgc ttttaatgag gaaaatccat
    97861 attatatggg tatttacgat gggaaaattg ccgaagataa aatacgagat tatgtggaca
    97921 acagcgattt aattttaaat attggagcca aattaacaga ttcagcaaca gcaggttttt
    97981 cataccaatt caatatcgat gatgtcgtta tgttaaatca tcacaatatc aaaattgacg
    98041 atgttacaaa tgatgaaata tctctaccat cattgttaaa acagttatcc aatatttcat
    98101 atacgaataa cgcaacgttc cctgcgtatc atcgtccaac atcacccgat tatactgttg
    98161 gcacagaacc attaacacaa caaacttatt ttaaaatgat gcaaaatttc ttaaaaccaa
    98221 atgatgtcat cattgctgat caaggtacat cattctttgg tgcttatgat ttagcattat
    98281 acaaaaacaa tacttttata gggcaaccgt tatggggttc tatcggctat acattacctg
    98341 caacattagg ttcacaatta gcagacaaag atcgtcgtaa cttattatta attggtgatg
    98401 gctcattgca actaactgtt caagctattt caactatgat tagacagcat attaaaccgg
    98461 tattatttgt gattaataat gacggctata cggtagaacg acttattcac ggcatgtatg
    98521 aaccttataa tgaaattcac atgtgggatt ataaagcttt accagctgta tttggtggta
    98581 aaaatgttga aattcatgac gttgaatcat caaaagattt acaagacacg tttaatgcaa
    98641 ttaatggtca tcccgatgtg atgcattttg tcgaagtcaa aatggctgtc gaagacgcac
    98701 cgaagaaact catcgatatc gctaaagctt tttcacaaca aaataaataa tttcatcgta
    98761 tacagggtat aagtttaagc gaatacttta ttaaacgaat aggactctga tataagatga
    98821 ttaattttaa taaaaccgct ttagtgttaa tcgacctgca agaaggtatt cttaaaatgg
    98881 attatgcccc atatacagct gaaaatgtcg ttcaaaacgc taataaatta atagatgttt
    98941 ttagaaaaaa caatggcttt atcgcttttg ttcgcgtgaa tttctatgat ggtaaagatg
    99001 tattgcaacc aaatgcaatg atctcattac caccaaaaga aggcgacgac tacagtcgtt
    99061 tccatcattt attagacaag agagatgacg attttgtcat agacaaacga cattttagtg
    99121 catttgtagg aacagatttg gacttacaat tgcgacgtcg aggaattgat acgattgttc
    99181 ttggtggtgt cgcaacgcat attggcgtag atacgacagc gcgagatgcc tatcaattaa
    99241 actacaatca gttttttgtt acagatatga tgagtgcaca aaacgaaacg ctacatcaat
    99301 ttccaataga taatgtattc ccattgatgg gacaaacaat aactacaaac gactttctaa
    99361 atatattgaa ctaaacatat acttcccccc ttcgatcatg ttgaggggga tctttatttc
    99421 acaaagtatt aatacgtcgg gttgtctaac cttctatatt taacatattc tatatctgtt
    99481 aaatcgttct taacttacgc ccctactaca taaaaaacag tatttattcc ggaattttca
    99541 aaaaatttag tatttattgc aaaattatgt atcactttat gtttaatttt tgatattatc
    99601 ttaattaagt agatttttat aagttctaaa aaggagaaca aatacatata tgaagaagaa
    99661 actaacattt aaagaaaaca tgtttatagg ttctatgtta tttggtttat tctttggtgc
    99721 cggcaatctt atcttcccaa tacacttggg tcaagctgct ggttctaacg tttttatcgc
    99781 taacttagga tttttaatta cagcaattgg cttaccattt ctaggtatca ttgctattgg
    99841 catttcaaag acatctggtt tatttgaaat tgcatcgcgt gttaataaaa catatgctta
    99901 cattttcacg attgccttat atctagttat cggaccattt ttcgccttac ctagactggc
    99961 aacgacatca tttgaaattg cattttcgcc atttttatca ccaaagcaaa tcactttata
   100021 tttatttatt tttagcttcg tcttctttgt gattgcatgg ttttttgcga gaaagccatc
   100081 aagaatttta gaatatatcg gtaaattttt aaatccggta ttcttagtat tattagcaat
   100141 tattttatta tttgctttta tccatccatt aggtggcata tctgatgcac ctattagtaa
   100201 acaatatcaa tcacatgcct tatttaacgg ctttttagat ggatacaata ccttagatgc
   100261 gctagcgtca ttggcatttg gtattatcat tgttgcaacg attaaaaagt taggtatcga
   100321 aaatccaact gatatcgcta aagaaacaat taagtctggt actatcagta tcattatgat
   100381 ggggatcatt tataccctac tagcaatcat gggtacatta agtattggtc atttcaaact
   100441 tagtgaaaat ggtggtattg ccttagcgca aattactcaa tactacttag gtaactacgg
   100501 tatcgtcctg ttgtcactta tcgttatggt tgcttgttta aaaacagcca tcggtttgat
   100561 tacggcattt tcagaaacat tcgaacacct tttccctaaa atgaattacc tagcgattgc
   100621 aacagttgta agctttattt cgttcttatt cgcgaatgtt ggtttaacta agattattat
   100681 gtactcagtc ccagtgttaa tgttcttata tccattagca attgccttga ttgtactaac
   100741 attatttagt agcaaattcc atcattcaaa acttatttat caatgtacca ttttctttac
   100801 aatgattgct gcattagtag atggattaaa agctagtcca gagttcattt caagcacatc
   100861 attctcacaa actttgatta atttcagcca aaaatattta ccattatcag acattggtat
   100921 gggctgggtt gttctcagtt tgattggttt cattatcggc ttcattattt ataaaattaa
   100981 gcatcgtaaa attccacaag cataatacta tgccacagtc atatgttaaa catatgcttg
   101041 tggcattttt tattcatact acattaaact gcaatcgtat acatacatat caatgattat
   101101 ccacaaaaaa tattagtact ttcattttac aaatcacatt aatacaaaca caaccttatc
   101161 tttatattat taaatttaca tttgacactt atattgaaca actgtaatat attaatatta
   101221 attctttaaa atgtataaat ataaaggagg gagaccgatg aattcaatca ttgaattaac
   101281 tgattattat agctctaata attatgcacc acttaagctt gtcatttcta aaggtaaagg
   101341 tgtcaaagtt tgggatactg atggcaaaca atatatagat tgcatttcgg gtttttcagt
   101401 tgcaaaccaa ggccattgtc atccaacaat tgttaaagcg atgacagaac aagcttcaaa
   101461 gttgtctatc atttcacgtg tcctttatag tgacaatctc gggaaatggg aagaaaaaat
   101521 ttgtcatctt gctaagaaag acaaagtact cccccttaac tctggtactg aagctgttga
   101581 agcagccatt aaaattgcta gaaaatgggg ctctgaagtt aaaggcatta ctgacggaca
   101641 agttgaaatc atcgctatga ataacaattt tcacggtcgt acacttggct cattatcact
   101701 atctaaccac gacgcatata aagcaggatt tcacccccta cttcaaggca ctacaacagt
   101761 agattttgga gacattgaac aattaacaca agctatttca ccgaatacag cagcaattat
   101821 tttggaacca attcaaggtg aaggtggcgt taatatacca ccgaaaggat atattcaagc
   101881 tgtgcgtcaa ctatgtgata aacatcaaat attattgatt gcagatgaaa ttcaagttgg
   101941 tcttggtaga actgggaaat ggtttgctat ggaatgggag caagtcgttc cagacattta
   102001 tattttaggt aaggcattgg gtggcggctt ataccctgta tctgctgtac ttgcaaataa
   102061 tgatgtcatg cgtgttctaa caccaggtac acatggttca acatttggtg gtaacccttt
   102121 agccattgca atatcgacgg cagcgcttga tgtacttaaa gatgaacaac tggttgaacg
   102181 atcagaacgc ttaggttcat ttttattaaa agcgttgcta caacttaaac atcctagtat
   102241 taaagaaatt agaggtcgtg gtttatttat aggcatagag cttaacacag atgctgcacc
   102301 ttttgtggat caactgattc aacgtggaat cttatgcaaa gacacgcatc gtactatcat
   102361 tcgattgtct ccacctctag tcattgataa agaggaaatc catcaaattg ttgcagcttt
   102421 tcaagacgtt tttaaaaatt aacaattaat catttatata tgacatagga gggattcatg
   102481 atgattaaag taggtatcgt tggcggtagc ggttatggcg caattgaatt aattcgattg
   102541 ttacaaacac atcctcatgt aacgattgca cacatctact cacattcaaa agtagatgaa
   102601 ccgttgaaat taacatttcc acatttacaa catattatgc aacatttcga agcacttaca
   102661 gtggacaata atgactgtga tgtaattttc tttgcgacac cagcacccgt aagtaaaaca
   102721 tgtatccctc ccttagtaga aaaaggtatt catgttatcg atttatctgg cgcatttaga
   102781 attaagaatc gtgaaatata tgaagcatat tacaaagaaa ctgctgcagc acaagatgat
   102841 ttgaatcatg ctatttacag catttcagaa tggcaatcgt ttgataacaa tggaacgaag
   102901 ctcatttcta atcctggctg tttccctaca gcaacattat tagcattaca tccacttatt
   102961 agcgaaaaaa tagtagattt gtcatctatt attattgatg ctaagaccgg cgtgtcaggt
   103021 gctggtcgtt cattatcaca acgtgttcat ttttcagaaa tgaatgaaaa tctaagcgct
   103081 tatgcaatcg gaaaccataa acacaaaccg gaaatcgagc aatatttatc tatcattgcg
   103141 ggtcaagatg tatcagtcat atttacacca catctcgtac caatgacacg aggtatttta
   103201 tcaacaatat atgtcaaatt atcatctgaa tatacgactg aatcattaca taaattaatg
   103261 acctcttatt atgctaatca gccatttgtc agaattagag atattgggac ttttccaacc
   103321 acaaaagaag tactcggtag taactactgc gatatcggca tctatgtaga tgaaacaacg
   103381 caaacagcaa ttttagtatc agtgattgat aaccttgtca aaggcgcaag tgggcaagcc
   103441 attcaaaatt taaatatatt atatgatttt gaagtgacga ctggcctaaa tcaatcacca
   103501 gtttatccat aaggggtgtt agaatgaaac atcaagaaac gacatcacaa caatataact
   103561 tttcaattat taaacatggc gatatcagta cacctcaagg cttcacggct ggtggtatgc
   103621 acatcggttt acgcgctaac aaaaaagact ttggatggat ttactcatcg tctttggcaa
   103681 gtgcagctgc cgtatatact ttaaatcagt ttaaagctgc accacttatt gtcactgaag
   103741 acactttaca aaagtctaaa ggaaaattac aagcacttgt tgttaattca gctaatgcaa
   103801 attcttgtac cggtcaacaa ggcatagatg atgcacgaca aacacaaaca tgggttgctc
   103861 aacaacttca aataccatct gagcatgttg ctgttgcttc aactggggtc attggtgaat
   103921 atttgcctat ggataaaatt aagactggga ccgaacatat taaggatgct aattttgcaa
   103981 cgccaggtgc gtttaacgag gcaattttaa caactgatac ctgtacaaaa catatcgctg
   104041 tatcactaaa aatcgatggt aaaaccgtta caattggtgg tagcaccaaa ggttcaggta
   104101 tgattcaccc aaatatggct accatgcttg cttttataac aaccgatgca tcgattgaat
   104161 cgaatacact tcatcaatta ttaaaatctt cgactgacca tacatttaat atgattactg
   104221 ttgatggcga tacaagtaca aatgacatgg tattagtcat ggcaaatcac caagttgaac
   104281 accaaatact tagtcaagac catccacaat gggaaacatt tgttgatgca ttcaattttg
   104341 tctgtacatt tttagctaaa gctatagcca gagatggcga aggcgcaaca aagttaatca
   104401 gcgtcaatgt gtcaggcgct aaatcaatat cagatgcaag aaaaatcggt aaaactatcg
   104461 taagttcaaa tctagtaaaa tcagctattt ttggcgaaga tgccaatttt ggtcgaatca
   104521 ttacagctat tggctacagc ggatgtgaaa ttgatcctaa ctgcacatat gttcaactga
   104581 accaaatacc tgtcgttgat aaaggtatgg ctgtactatt tgatgagcaa gctatgtcga
   104641 atacattaac tcatgaaaat gtcacaattg acgttcagct tggtttaggt aacgctgcag
   104701 cgactgcata cggttgtgat ttatcctatg attatgtgcg tatcaacgca tcatatcgaa
   104761 cataaggtgg tgttggttag atgaaattta ttgtcattaa aattggtggc agtacactta
   104821 gtgacatgca tccatcaatt attaacaaca ttaagcattt acgatcaaac aacatctacc
   104881 ccattatcgt tcatggcggt ggcccattta ttaatgaagc attatcaaac cagcaaatcg
   104941 agccacactt tgttaatggc ctaagagtga ctgataaagc aaccatgacc attactaaac
   105001 acacgctcat tgcagacgtt aacactgcat tagtagctca atttaaccag caccaatgtt
   105061 ctgcaatagg cttatgtggt ttggatgcac agctgtttga aattacatct tttgatcaac
   105121 aatatggata tgtcggtgtt ccgaccgctt taaataagga tgctttacag tatttatgta
   105181 ctaaatttgt acctatcatc aattcgattg gtttcaataa ccatgatgga gaattttaca
   105241 atattaatgc tgacacgctt gcctatttta ttgcatcatc attaaaagcg cctatttatg
   105301 tattaagtaa tattgcaggt gtactcatca atgatgttgt tatacctcaa ttgccattag
   105361 tcgatattca tcaatatatt gaacatggtg atatttatgg aggtatgatt cccaaagtgc
   105421 tagatgccaa aaatgcgatt gaaaatggct gtcctaaagt tatcattgca tcaggaaaca
   105481 agccaaatat cattgaatct atttacaata atgattttgt tggcacaaca atccttaatt
   105541 cataactatg aaattaaggc ctaacaagtt ttgacacgcg agatgattcc agttcgatta
   105601 tccattgcgc taaaacattt atttaccgtt catctcgtta acaattttga atacagtacg
   105661 atacaatatg agatgtaaaa aactaataac cttttacaaa tttgtttatc aaaatatttt
   105721 aagttttgca aagcttttta ttgtgattat tttcacaaaa tactataatg aggatagtaa
   105781 atagagagga gtccttaagt tgacgaaacg acaaatgggt atattcattt atgctggaat
   105841 tatcggtggc ttgttatctg gaattgtaaa attaggttgg gaggtcatgt ttccacctcg
   105901 cacaccagaa cgtaatgcaa cgaacccacc tcaagagtta ttgcaacaat taggatttag
   105961 tagtgagttt acgcatcaaa catatacatt ttcaaatatg gaattgcctt gggtaagctt
   106021 tattgtccac tttagttttt ctatcgtcat tgcaattatt tactgcatat tagttaaaaa
   106081 atacgcttac ttagcaatgg gacaaggtgc tgtttttggt attgctattt gggtattatt
   106141 ccaccttatc attatgccaa tcatgcatac tgtacctgct gtgtgggatc aaccattcca
   106201 agagcatctg tcagaattct ttggccatat cgtctggatg atgacaattg aattagtgcg
   106261 acaacatttt gtctatcgct ataaattaaa ttaatacact gactaacatt aacgtgagtt
   106321 ttaaatcatc gtttgagtat gatgattgat gctcacgtta ttttattaac tgacatgata
   106381 tgattccagc caacttacgt gagcattaaa gtctcaaatg cgtcgtaaca aactattatt
   106441 ttcggtaatt tcaatattgc tcagtatatt tttaccttat cacttacttt aatctcgtca
   106501 tgattttgaa tgatgccatc gtgtattcac ctttcatttt tccaataaaa aaacatctaa
   106561 cagtaaacat ttaggcagta tagtttaaaa tcactgcgca atgatactgt cagacgtcat
   106621 attaactact caataactga aatacagaca cttttttata accccagggt gcctgtccta
   106681 agaaacatac ctgtaccata aactgatcaa aaataaattg tttgaacttc acttcacgtg
   106741 attgataaaa gtgtgattgt gtcatatcat aaatgtccaa tcctttgatt aaaccttcac
   106801 caatcaattt tgtaaaactt tctttttgtg tccatatttg ataaaaatca tttaaactac
   106861 atatttgatg tgcttcgttt gtagagaaac acgtcactaa cgtacgccag tctaaacgtt
   106921 gtgatatctt ttcgatatca ataccaactg gttctttatc gacaacacac acgatataag
   106981 gataactata tgataagctc acatagatgg gctgtccatc acgattgtgt tgaacaatat
   107041 ctgccttacc tcgtggcgaa atgtgataat gccattcatg tggtaataaa cctgtgtcat
   107101 gttgaattcc atattgcact aaaatatctc ccaatctgtg catgagttta tcttgattgt
   107161 atctatagtt gactgtacgc ggttttttat atgaccaacg actttgtgat attaattctt
   107221 caatactttt caagttactc tgtaattgca ttacaaatac tgtcataact ttccctactt
   107281 acttattgaa tattgttttg atatattgtg cccaatgata cagccaattg ttagttatcg
   107341 ttggccattt ttcactgatg tgattcatta tttttaatgt taatgttgta tctatcattg
   107401 ctagttgttg ttcacggtca acactagtta atccaatcgt ttcgtacatg tcttgtttct
   107461 gtaaaatttc attaaatgat tcatcgctga cgagttcaat ttctttgcgc ttaacgcatt
   107521 ctaacaaaga tttcaccggc attttattag gtgatagcac atggtaaatg atttgtggtg
   107581 tgttgacctg tgctaatgcg acaatttgtc ttgcagtcgt atccacaaaa gaaaaatcta
   107641 caggcatttc agccatgcta accccgatac aatccagttg taacaaatca ttcattacca
   107701 ttgaaaaacg gttagtcttt atatttctca tatgccatct tccattgtaa ggattcgtca
   107761 aattaccaac acgtacaatc cgaccatcta agccattatt tacagcttct aatactttta
   107821 attcactata aaatttgctc cgtgtatatg gtgatgttag tagttgccct ttatagacat
   107881 ccgcttctga aaatgtcaca tcttctgtgt ctatatcaaa ataagttccc acacttatcg
   107941 tagacacata tattaacctt gcatgatgtt gttgtgccaa acgtatgaca tcaacagtac
   108001 cttgaacatt tactttttca aattcatcat catcaccaaa gtgatctgta cgagcacctg
   108061 catgaataat cgtatccatg ttttctggta aaacaacatc atccatacac tcgaaatcac
   108121 caacaatgac ttcaatgttt gataacatta tttcaaccgt ctcttctgaa aaataatcat
   108181 ttaaattcgt catcaactta taccatgcta tttcctcatt atcagcacgt atgaaacaat
   108241 aaatgcgatg actgtatcct tgtagtactt caatcagata agcacctaaa aaacctgtcg
   108301 cgccagtcaa tagtgtattt cctagaggtc gatgacttag actatcctct aaaataccca
   108361 agttataacg agacataaca atcttttgta attccgaaag attatccggt aatgcaacta
   108421 atgattgttg attttggtac atataattaa caatctgtcg cacggtttta tattggtata
   108481 atgtctgcat tgaaatatga tggccaaatc gttttaaatg cgagacaact aacatcgcct
   108541 ctaatgagtt accaccaagt tcaaagaaat catcgtcaac accgacatca ttttgtttca
   108601 atacctctcc aaatacatca acaaatgtct gctcaatttc attagagggt tcgctataca
   108661 ctttattaga ctgttgtata ggtgatggat ttggcaaacg cgtagtatcc accttgtcat
   108721 tcgtggttaa tggcatacaa tcgatatgcg ttatagtctt aggaatcata tacttaggca
   108781 gctgatcatt taaatattgc ttcaaatcct gttccacttg ttgctctccg acataataag
   108841 cattcaatat atcatgcgta tcaaagtgac ttactgttac aacacaatca gatataccac
   108901 gaatagctaa tattgcattt tcaatttcat caagttcaat acggtacccg ttaactttca
   108961 cttgtttatc tattcttcct aaaaattcaa tttgaccatc agatgtataa cgtgctaaat
   109021 caccactatg atacaacttt cctttaccaa atggattatt ttgccattta tcagccatta
   109081 attctggacg attaatatat cctatcgcta aactatcacc tgcaatacac aactcgcctg
   109141 gcataccaat accgcataac aaaccatctg acataatata cacttggatg ttagataagg
   109201 gtttgccaat tggaatcgtc tcaggtatca aatcaccaca atgatgtgac caatacgatg
   109261 tgatgactgt tgactcagat ggtccatagg cattgaaata cgtgccacaa tgcttctcaa
   109321 tatatttaac aaaggatgcc gtactagttg ccccgcctgt aatcaacttt tcaatataaa
   109381 agtcttccat aacactacac atctgtaacg gaatcgacgc aaccgtcaca cgatgcttat
   109441 taatgagttg ttgtaactgt tctggattaa cacgttcctc tctatctgga atcacaagcg
   109501 tatgaccatt taacaaacaa caataaatct ccataactga tgcatcaaaa acaatatttg
   109561 catgttgcaa aaatacttca ttgtcgccta attgcaattc agttgaccat gcatgcacta
   109621 aattcaacaa atttcgttgt cgtatggcaa cccctttagg catcccggtc gtaccagatg
   109681 tgtaaatagc atacatctca ttatctaaca tcgctgtgtt ttcaagttga ttgccatgta
   109741 aatcatcata ttgttcattt tcctttgatt caacaaagcc tttagcattt tccaattgaa
   109801 tgactggtaa tgtcgtttca atttcaacgc cgtaagacat gactgcagtt actttagcat
   109861 cctccaaaat tgcaccttgt cgtttattcg gaaaatcaat atcgataggt atataagatg
   109921 cacctacttt aactgtcgcc aacatcgccg caatcatttc aaaactacgt tctgtaaaca
   109981 aggcaacccg ttgaccattg cccacaccat ttgataggag catgtgcgca atggcatcca
   110041 catagttgcg taatgtttca tacgtcattg tcaaatcatt catgactagc gcaacatgat
   110101 taccttgtcg tgagacaact tcattaaagt aacttatgat agatttattt cccgggacat
   110161 taagcattcg atcgttaaca tgcgtattga cccaatttag aagttcctcc gtgccgtttg
   110221 gtatatcaca aatttgtagt gtatcttgat gcttcaaaat ataatcaatc ataatcatac
   110281 attgattacc catgtgacga actgtttctg agtgatataa atcggtatta tactcgatat
   110341 tgattgtata gtcatcgcga tcttcttcaa tgatgaaaga taaatcaaat ttcgccgtca
   110401 ctgatttggg ttgaatgtgt gttaatttac tatgcccaaa atgagcatga ttcgtttcat
   110461 tgttttgtag tactaacatg acatcaaata atggattccg tgaggcatca tgtgattgat
   110521 ctaagtcatt tactaaacat tcgaatgggt attcttgatg ctcgtatgcc tccaaactca
   110581 tttccttaac ctcttgtaaa aactgtgtcc acattttatc aggtgacggt tgccctctat
   110641 ataccaacgt attagcaaac atgcctagca tttgctccgt gcctttatgc atacgcgcac
   110701 tcatcacact accgacaaca acatcatctt ttcgagcata tctacttaac aacgtcatga
   110761 ccacactcat aaagaacata aaatcagtaa tttgatgctt ttctacatac ttttgaagta
   110821 gctgtctcat ttgttgattc attgtaaatg acatcattgc tccatttgtc gttttaatat
   110881 ttggtctaac atagtctgtc ggtaagctta aaataggtac ttcatctttg aattgagata
   110941 accaatattg tctatgtttc gtcatatcac gatgcgacat ccactcacta tagtctttat
   111001 attgcaattt aagtggtaac aataatttat gttgataaag tgcgttaaga tcattcatta
   111061 attgtatatt actcataccg tcattaatga tatgatgcgt atctataaag aggtatgcat
   111121 gtaagggact tctaatgtat ctcactctaa tttgacttgg cttttccaaa ttaaaaggtg
   111181 ctacaaattg gcgcatgatt tcttgttcat ccgtaaaatg cgtgttaact tcttcaaagt
   111241 caactgcaac atctgccaca atacgttgtc gaacctcatc atctacaaca atatattgtg
   111301 ttcgtaaaat ctcatgtcgc gctatcaaac gctgcactgc ttgtcgcaat tgagctacat
   111361 taagttctga tgataaccgc cataaaaaag gtacgttata caccgtatct ttatggtttg
   111421 atttccataa taaatacata cgcttttgtg cagagctcag cacataatca tctttaacta
   111481 tagtttctgg aatcacttca tagttttgtt cttgaacctt agcaatcgct tgtgctagtt
   111541 caaatacagt tggcttttgt aataaatcac caatttgtaa tcgtttccca gtagatgcct
   111601 ctatccgatt caccactaac gttgctttta atgaatggcc acctaattca aagaaattat
   111661 catgaatacc tacttgattc acatgtaaaa tatctgcaaa aatttggcat agcaagtgtt
   111721 cggtatctgt actcggtgct acataggcat ccgtatcgac atagtccatg ataggcaatg
   111781 ccttcttatc taatttccca ttaatagtaa taggaatttg ctcaatatgc atgaaattaa
   111841 ctggtatcat gtactccggt aaggtcatac gtaattgtga tttaatctta ttatgtgata
   111901 atgtatgcat cgcttcataa taagcaacga tatactgatc ttgatcatga ttttgaacaa
   111961 taacaactgc tttattaata ccttgtatac gctcgagcgc atgctcaacc tctgacaact
   112021 caatcctaaa ccctcgaatc ttaacttgtt tgtcctttcg atataaataa tctatgttgc
   112081 catcgggtaa caaacgaacg atatcaccac ttctatacat cagctgattt atatttgaat
   112141 ctttgataaa tttatctgct gtcaattctg gctgatttaa ataacctgca gctaacccaa
   112201 agccacttgt acataattct ccaggaatac caacgccaca ccgacgctcg ccttgcatga
   112261 tataaacatg agtacccaga atcggtttac caataggaat acgatttgga actttgttag
   112321 gtatattata cgtcgttgta aatgttgtat tttcagttgg tccataacca ttaataattt
   112381 gaggatgctt cggtttttga ttaagcaaat ccacccactt agcattcaat acttctccac
   112441 caattaataa atactttaac ggtaccaata cttctattcg ttcactagca atctgattaa
   112501 ataatgagga ggttaaccac atagtattaa cgtcattttc attgattaat tgttctaccg
   112561 ctattggatt taataattgt tcttttttag caacaatcag ctttccacca ttgagcaatg
   112621 caccatatat ttcaaatgtt gcagcatcaa aggctatagt tcctgataac aaaatcgtcg
   112681 tctcttcatt taatggtaca taatgatttt gatggaccaa tcgaacaata cctcggtgcg
   112741 gaattagtgt ccctttaggg ttaccagttg tccccgacgt gtaaataaca taagcatgat
   112801 cttctaacgt gttacattta gaaagattat caatattttt ccacgctatc ttattcaaat
   112861 caatgtgatt aatattttgt ttaccatttt catataaagc ttggtacgtt attacaactt
   112921 taggcgttac atcttttaaa atgtactcct gacgatcact tggatagttc ggatcaattg
   112981 gcacgtaagc cccaccagct ttcaacacac ctatcatcgc tattatcatc tcaatacttt
   113041 tttcagctat gacagcgaca cgatcattag gttcaacacc atactggttt ctcaaacggt
   113101 gtgctaaatc attcgcgcgt gcattcaatg tttgatatgt tataaacact ccgtcaaatt
   113161 gcacagcgac atgattcggc gttgcttcaa cttgttgctc aaataaggta acaactgttt
   113221 gcgcatcatc tatctcaggc aaacttaaat tgatatcgtc atataattga atatcacgtt
   113281 ctgtcatcaa attaagttca tctacagttg ttcgtttatt tccattttct tcagtaattt
   113341 gcaaataaat atttcgaact aagtcactca gcgtctcgat tgagagcaaa tcatatgctg
   113401 cactgttata tataattttg aacccgtgtt gatgtggaaa aatttcaata tccgctaaag
   113461 atgtatgtgc atcatgtatt tgatgtacat cctcaataac atcattacaa caagacatca
   113521 tatgatgata acaatgaaaa atagtctcta gtgaaagcga agacttcgcg cactgtaatt
   113581 gcgacatatt ttgcaacaca catttattaa aatctgttgt aaaacgttga catacatctt
   113641 ttgcatcgat tgttaacgtt aacggcacaa tatttccgtg taaatcattt ggtaaatgtg
   113701 atggtacatg tatacctaat gtgacatcat gttgttgact cattatatga ttagctaaat
   113761 acacactaac agccaacgat gccatatcta ttgatgtcat atcatcaatc aaatacgttt
   113821 gatataaagc ttgttcaaat ggatgcttaa ttggaaaata actatcaata tggatgtcag
   113881 agttattctc taaccgaaaa tagtttgagt ctaatgctat atgcgatgca tcttgattgt
   113941 ctttatcatc atttctattt atatgtgcat gctgtcgagt attgttaata acagtattgc
   114001 cacgatatgc attgcataaa tcatcaagaa aaatatcaat ttgactatca tcgaaaatgg
   114061 acacatgaaa atctaatagt atatatgcag catcagcgaa ctgaaacaat ttaactttga
   114121 ataaaggtga atcattaaaa tggtaagtac ttaattcttg cttaaaaaaa gcttctaaat
   114181 catagtttgc ggaagaagat ggaacttgtt ttatctcaat aaaaggcaga aattcatgaa
   114241 gtatcattgt taaattgtca tcggtagtaa catcaaaaaa atgtcttata gatgcatgtt
   114301 gttgcacaat tgtcgataat gcatacatca ttttagtagc ttcaacattt ttagcgagtt
   114361 taacccaata cgcattacgg tgtgtcgttg attctgtatt atttttgtat atacgaaaat
   114421 attcctgttg aaatctcaaa ttacccataa tcataaaaag tccttctttc atatcataat
   114481 actcattact tactgaaatt gcatgatgat atgataaccg acgaaatgtt aattaactcg
   114541 ttatgtaatg attaatataa aacaccattc gcaacatatg agcgatatat tctaccctaa
   114601 aatacatctt gtatcatcgt tacaattggt atatttttca atgtaaatta catacatctt
   114661 cgataaatag cacactacaa ctcgttaatc actttctgtt gttcacatct cattgcaaac
   114721 tcaatattgt tgttacaaaa tatccatgaa gcaagtttat attaaacaaa caactcgcat
   114781 aaaacaattg ttatccttaa attttaacaa attcttaata aatttatctc tattttaatt
   114841 gcgaccaaat taataggttt tccatataaa aagatgcata aaataaatat ttaaataaat
   114901 tcaatttgta ttcacttgtt tttgtccccc aaatacacca gcaacaagca tgctagcacc
   114961 aattgttaaa acgataaaca tatacagtcc catttgtaat gacgttaaga aaacacccaa
   115021 cacaatccct aacctagcta gtgtttctga aaaatgaata cctaatgcat taactgcact
   115081 atatgttcct cttttagctt taggaataat tttaaagcgt tgttctgaaa ctataggcga
   115141 ataaataatt tcacctacag tcgcaattat cataaaaaca actaataagc caaactgatt
   115201 aagataggtt agaccactat agccaacaat ataaatcagc aaaccagtga ttaaagcttt
   115261 tttaaaatct attttcaata caactttcga gattgaatac gtgagtaaaa tgacgacgac
   115321 cgtattaatc attagcaaga ttgctaacat cttagcacct gtaatatcat atgaacctat
   115381 acttattgtt tcaaactgat cctttagtct aatagcaata tatgaggaga ttgaaaattc
   115441 acccatcatg atgatactga accccgaaat caataacata taattacggt ctttcaaaac
   115501 taatttataa ctgcgaaata tattcattat ttgtaatttt tgataacgac ttgcatgcct
   115561 cttgtcatca ctttgcttta cttgatttcg gtcttgaggt aaccaaatat ataaaataaa
   115621 gagtacaatt aaaaatatac aagctgctat taagaaaagt agtaacatac tgtagccata
   115681 catcaagcca cctaacaatg ccccaatagc taccgataag tttgtcatcc aatagctaat
   115741 cttgtaaata taatgttcca cgtcttcggt aattgcatcc ataattaatg tgtccataac
   115801 tggaaattgt aatccccaaa cgattgtaaa tatggcatat gcaacacaaa aaccaataat
   115861 ttgccacaat tgatgtgacc caaatacgcc catgaacaca agcattatca ccatcgtcgc
   115921 ttgataaata agtactagca actttttcgg aaatatctca ataaggtaac cagatataat
   115981 ggacaatgga aattttagaa ccactaaacc aacaagatat ataccgacaa ttgattgact
   116041 taacatatct gttaaatata gtgctataaa cggtataaat gctgtcgtaa taattagctg
   116101 taaaaaattg ctaatcaatc gtactttcaa agtcgtactt aagcgtttca ttaataacta
   116161 cacccctttc cacatatata cacactacca tttatataaa atctattatt agattatacg
   116221 ttgaaacaaa gaatttttag ttatacaaag ttatttaaca aacaaatgca tcgactttac
   116281 aatgcatctt gcatataatg cctcaaaaaa attagcacta tatgactata tattattcca
   116341 aatgaatgaa atttatcaat aattgcgtaa gtgaacacat atgtgcgtaa atgttaaatc
   116401 attgtcctaa catagctgtg actatactta gatgtaatca taaaaaaact actgccatct
   116461 ttacaacagc agtagtgctt atatgattca tttatataaa attgaaagcg ttaatcgcta
   116521 gcccagcatc cttattctat ttagctgtat aacttttact agcaatacga ccacttgcaa
   116581 caataatatc tttatcttgg aaaggttcat gattgaagaa acgctctaaa atatctttaa
   116641 ctccatcttc aatacgtttt tgtgcttcta aagtcatacc tgaatagtga accgtcatag
   116701 catttctagg cattgttctc catggatgat cagcaggtgc aggttgtgga taccaaacat
   116761 caccagcata tccttgtaaa tgctcggatg ctaacgcttc aactaacgca tcgcgattta
   116821 caattttacc acgtgcagta ttcactaaat aactgtgttt tttcatacga cttaaaacat
   116881 ctttatcaaa taagttatca gtttctggtg ttaatggtgc atgaattgta atcgcatcac
   116941 ttgttgaaac aagttcatca aagcttacaa atttagacaa tttatggtct tgttgattga
   117001 ttggatcata gtgttgtaat gttacattaa atggcgctaa tctttcagca acaagttgtc
   117061 caattcgacc aaatccaaaa ataccaattg ttttgtgttg taattcatgc gcatgattac
   117121 ctacttgaga caagttccat tcaccttcta ctgattgacg atgaccttct tcatagtttc
   117181 taagaagtat taataaatcc ataaccgcat gttctgccac actaactgta ttacttcctg
   117241 taacttcaac gacaccaata ttgtgttcac ttgctgccgc taaatctaca tggtcagatc
   117301 ctacacctgc tgtaattgct aatttcaagt tcggtgcttt ttcaatacgt tcacgagtca
   117361 tatatgcagg ataaaatggc gcactaataa tcacatccat atctggtaaa tgtttatcta
   117421 agtcttcacc attatctgct aatataatga actcatgtcc tctttcctct aaaaatgttt
   117481 ttaatcctaa tgctttttta gtattaagta attgattttc ttgaccttct actgcttctg
   117541 gaaataatgc tacgattttc atatccatct ctcctaaatg ataaattttg acttccttaa
   117601 agtacgtgtt gcatgttgct tgttttaaaa atatgacaaa aaaacggcac cgtttgacat
   117661 accaccccct tgaattattg ttaaattcaa agcgaagtta gcaaacagca ccgtgtacct
   117721 tacaccagca acacttattc tattgactta tcgaaaacaa atattgaaat gacttcatca
   117781 tcattcaaat caatatctgt aaataatttt acaaacttag cgcctacaag actttccatc
   117841 tcatttacat ctatttcttt atacatctgt ttaatcttct ctgtgcgtgt ataatggagc
   117901 atcgattcat tgcgtttgtc gtttaggtaa aaactctcaa ctttactcaa aacacctgtc
   117961 atatgtgcaa tcgcccaatt atctttaaac gacactcgaa tactattggg tcctttaccc
   118021 acgtattctt tacgataaga tcttactaga ttcgagaatt gttgttcttt agtatgcgta
   118081 tctatagtat tcaccttctt taaaataaga agttcattaa ttgttcacat tttcattata
   118141 caccttatta acactttttc aatgataacg attattatta ttacgaaatg tatattttcc
   118201 tagttaaaag gatataacaa attaacagaa aatgtttata aactaagatt tatattattt
   118261 taaaaaatgt ttcaacaaac gcatctaaac aaaaaatcag cttatcacac ttaccccttc
   118321 aactctgctt caagtttacc taaatgtctt aatgtcggtg tcaatgctgc gaagaagaat
   118381 ccttctttta acttgcgaac ttgtggcgaa tatggtgtgt acgctctaga accaccattg
   118441 acaacagaag cttgatttac atctaacaat aaatagccga tgtccttctt caatgatatt
   118501 aattcattta aatgtgaagt taagttaccg tcatctaata ttgcataata ttcctctcta
   118561 agttgacgat aacgtttttt aaaagcttca acatcatact ctaaatattg atttattccg
   118621 ttttgcacat ttgaaaatgc atcaattaac tctaaagaac ttttaattga gcctaatcct
   118681 attggaattt ggtaagcaat aaattgcggg cgaatagttg ccgcaaactg cttcgcatca
   118741 tgcgtgataa tttgtgattg tggcactacg acttgattca atgtgatttg atacgttgct
   118801 gacccgttga ctcctaaaaa attggttttt tcaacaagag tgataccatc ttgattggca
   118861 cgtagaatga acatgacaaa ttcatctgat gattcatgtt tcgaaatcgc accaaaataa
   118921 tggtcttctt gaatattact tacagctggc atacgtccac tgacaaccaa ttgtccatca
   118981 acataagtgt gttcaaggtt caacttttct aaatcattaa atgacttcat cggattagac
   119041 aatccggtag cacctaatat ttctccagat aacaattgct gttgtaagtc attatttaaa
   119101 tgtggctgcg tggcattttc taaatacgtt gaaaaagcta attggcacca taaacaaaat
   119161 cctgttgtca aacaagactg cgatacagct tcgattactt cagcattttt tctcaatgcc
   119221 gcctcaccga aataaccatc tacaaataat tgctgaataa atgttctcgg ataatacgtc
   119281 ccttcatcaa cttctactaa atgaggatct aattgttctt tgataagcgt ttctaaagtc
   119341 atcatcatct ctccttattc accaaatctt ctaagtataa actgctcaat ataactaatg
   119401 aatcgatcaa taataaaacc aaataatccg ataaagaata ttgctgctaa aacatcttct
   119461 aagttcaaca tatttcgtgc atcaacgatt aaaaaaccta atcccgattg tgcaccaatc
   119521 atttcaccag aaactaaaaa tatccaactt gttcctaccg ccatatgtat cccagccatg
   119581 atttgtttaa atgccccggg aaataatata ttgcgataca atgaccaccc agttaaattt
   119641 aaatttgctg ctatttttaa atattgaggt tcaatgtctc taacgccttt aatagtattg
   119701 aacacaattg ggaaaaaagc agcgataaaa ataatcgcaa tcgctggcaa actaccaata
   119761 ccaaaccata gaacaacaaa tggtgcccat gctatcggag atatcggcct aatcaattga
   119821 aatagcggtt cgatagcgtt gtatagccaa cgattccttc caagcaagaa gcccaatgga
   119881 atagcaacca acaatgcgac aacaaagccc gctacaaatc tccataaact aattgctaaa
   119941 tgttggaaaa tttctccagt aacaatgaaa gaccatatac tttttcctac aagagcagga
   120001 cccggtaaca atacaggttg gtaatgccca ataataatga ccatttccca aatgcctaag
   120061 aaaataataa atgtgataat aggtaatata aatttgttat ttgtgggacg tgtcatgaac
   120121 gcgatgcctc cttatacaat gacggttcaa caaagtcatc atatgcaggt ggattaaaca
   120181 aatgatgttg ttttaccaat gtcgtaattt cttgatagcc ggatggctta attgttaaat
   120241 caccatagga tgtccatgcc gctgactgtg ttaaaacgtc acgactttgt ttaaaatgat
   120301 gcgtcataat gtctacactt tgcttgcgat cattcatttt aaagccagac tttttataat
   120361 cttgtacaaa tgcttgcgct acatccttgt gttgatcaag caattcccct ctcagtacta
   120421 gcacacagca atacgcatca ggtataacgt catcaccatg tttcaaagtc ttacctttgc
   120481 ctaacttttc acccagtgca ccgaatggtt cggctacaga ataccctgta attctgtgtt
   120541 cactcaatgc ggctggcatt tctgctggcg acatttcatg atagctaaaa tgccccggtt
   120601 taatctttaa ttgtttacgt aattcctcaa gtaaaagata atgtgttgaa taacgatgtg
   120661 gtataccaaa atggtaatca tcgccattat tattaaattc atttaagtgc ataccttttt
   120721 gtcccataat gacattgcct tcatgatggc ccaatgccac agcctttata tttgagccct
   120781 tctgttttga tttcatcgct agctctatta aagttgatgc accatcaata cgaccactgt
   120841 ttaatgcgtc cattaaatct ggccaattat tgaatttaac taattctagt ttatatttcg
   120901 gatgattgta ttgtgataat aattttttag tcatcatcaa attagctgaa tgtgtaatcg
   120961 gcaaatatcc aattttaatc acttgctgat tttgggcatt tttagaccgt tctttagacg
   121021 tcctttgcca atcacatcct gtaattataa agattccaat gatgacgatt atgcttaacc
   121081 ttttcatcgt cactcactcc ttataaataa tattcaggtt caacttgatg atgattcaat
   121141 gcaaatgttt ccataatttc attacgaatc ttaagtaggt ggctatcatt acgactgcgt
   121201 ggatgtgatg ctgtaatttc atattgagaa ataatattgc acccttcacc taacagaaca
   121261 atgcggtcgg aaagataaat agcttcatca atgtcatgcg tcactaaaat aatagttgat
   121321 tgcgttttat gttttagttg cactagttga tcctgaagtt tataacgtgt aaatgcatct
   121381 aatgcaccta atggctcatc catcgatata acgttaggct tatgcacatg cgctcgacat
   121441 agtgccacac gttgtttcat acccccggac agttgctcgg gaaaatgctt tcccctgtct
   121501 tctaaatcaa ctaatttaag ctgtgcgtta atctcttcat cactaatttt ctgttgtaat
   121561 ccaatcctaa tgttgtcatt aatcgttttc catggcagca aattatgatg ttgaaatagc
   121621 attaaacaat ctggagatgg ctgttgttta atttcgttat caataatgac acgaccagac
   121681 gatggatgaa taaatccacc gataatattg agtaaagtag actttccgca accacttttc
   121741 cctatgaaag tgactatttc tcccttgcta atgtccaaat taaagttatg aattacttta
   121801 tgtgatccaa agtgatgttg taattgttga attttaatca tgacaagccc ccttttaacc
   121861 cctactattt taataggaat taagtgtata tctaaagggc tatgccaaac acagccctta
   121921 tatcgtgaat tgttatatct atagatgatt atggtttggt atgagtgctc ttataacata
   121981 agcgttattc aattaacgac gttatattaa tttcagctct actaaatttc aataaaatga
   122041 ttgttttaga caatacttgc atttagttca ttagtttctt catatcaact acttacattt
   122101 atagcattga gctattctaa ttaactgcaa tcgaaatcca tgccaaacct atatacatat
   122161 atctcatcaa cttgttgtct tattaaagtt tttcgatgcc atcaatcggt gtatcaactg
   122221 ctttgcgcgc gcgacgtacc gcttcttcat caggtgcgtt gtataaacaa atacatttag
   122281 acatatcttc acatacatat gtgcgtttaa attcaacttc tggcacttct tcataatgaa
   122341 cagaattttt ctttttacgt gctaaatatt gatccatcgt aatgccttcc ggaatgttcc
   122401 aagttacaag gtaatcaaca tgtgcatcac catttttaac ttcatctaaa tctttaccaa
   122461 ctaagcgtac ttctttgact aattgaatac taatatctgc ttctgttaaa aattgtttag
   122521 cttctgcttc gtcatttgct tccacaataa aataaccatg agttaaattt tcagtagctt
   122581 gtacttcaat taatgttgga attgtcttcg tagatagtga tgctgccttt gcttctagtt
   122641 cttctttcgt tgatgcaaaa tcaagattgt tagcttctaa taaaaataat gtcattaata
   122701 agacctccta taacaatggt tgaaaaaata ttactataat tcttatcgga ttacaaggat
   122761 attaagatat ttttttaaat atttagataa aattctgtaa aatatatttt caaagagtat
   122821 aaaaatcatg ttagggtata agtaaataaa catatatata gggggctatc attatggata
   122881 aagaatctgt cgtagcaagt ttagctagaa acaaaaagat tgctgtagaa acaatggccg
   122941 gtcaaaggta catcatagaa cgcattttac atacaaatga tgaaaaacat attcatattt
   123001 tgaaacctaa agatgtcgtg ttagatgtag atagcatcaa agaaattgac gaaaatcatt
   123061 taaatgatgc aacataagta taaaacgaaa cgtgcgccta tgacatagat taatgtttta
   123121 ggcgctacaa tgttttattt atgttaattt gtcgaagtat ggctcatcta atggattcaa
   123181 ttgcaagttt tcaatttgca acgttgaatg tgcaatgcca tatttttctt tcaacaatga
   123241 tgatacttga tcaatcgctt gataatcatc accctcatat tttttatcta acacaacatg
   123301 ggcacttaat gaataatgct ctgttgtaat actccacaaa tgaaattcat gtacatctaa
   123361 tatgccatct atgtttttaa tatctgccat aatttgatca gtatccaaat gttgaggcac
   123421 actttccatt aaaattaacc acgcattacg cgtaatttta taaccaccac gtaaaatgat
   123481 gagtgaaatt acaatactaa tgattgggtc gatgatgcgc catcctgtaa agtaaatcaa
   123541 tacaactgca acgatgacac caatagagtt caataagtct cccatgaaat gccataatgc
   123601 actttgaata ttgatattgt cttcttgttt taaagacctt acaaggataa cagtcaaaat
   123661 aatattgacg agtaaaccaa tactagcaat cataaacata atgccacttt caattggttg
   123721 cggataaata atacgtacaa tagcttcata taaaatccag attgaaatta caattaatgc
   123781 taaaccattt aaaaatgcag ctaatatctc aaatcttaaa tatccaaatg tgtatcgtgc
   123841 agtcggcttt ttacttgcaa aataaatggc caacatagat aaaccaagtg ctaatacatc
   123901 actaagcata tgaaatgaat ctgacagtaa tgccaatgaa ttagatacta aacctccgac
   123961 aaattcaatc actgtaaata acaatgtgat gattagtgat gcccacagcg tctttttaga
   124021 actttgttga attttttgat gattgacatg atgaaaatat ttgtatctgt ttatcgtatt
   124081 cgcctttttc ccattcatac gtttgccact cctaaataaa tgcgtcgtat ttaatattgt
   124141 cgcttttaaa aataattctt tatagcttct caggttaata ttaatgcttc cgtaattaac
   124201 catgatttat acatcatcgt catttacatg acaactcatt aatctttacc ctttatagct
   124261 ttatgtaata tcaccttgga aaacttttac agcacactcg cgctttgctt tattcctatc
   124321 atatagaaaa ttttaataat gtacgagatt attgtgttag ttacataaaa atgacaaaaa
   124381 agtatctcaa atttattgtt tagtttcatt aagttcaaaa aatcgcaata actttaatga
   124441 ttgttccgca tattaaaaca aacgatgact ttgcatattg aacttcatat ttctaaatca
   124501 ccataattaa taaacaactc tgtccttata atagccgcat cgcaaattag cataattaaa
   124561 aacagcagta agatgatttg caattaaaaa ccatcctact gctattattt tagtcattat
   124621 atcctaatat catgatacgt gttcctatat attttgtttt gcttaaaatc taaacaacgc
   124681 cgttaaatgt taagacttac cgctagactg acctacaaac acgcttcaga aacgatattt
   124741 attctagtac aaacctttta aagcattgct tgtatcaata taaatatttt taacttgttg
   124801 atagttactt aacgcacctt tataagtttc tcgaccgata cctgattttt tataaccacc
   124861 aaatggtgcg ccttctggta cttggttgta agtgttaatc caaatacgtc ctgtacgtac
   124921 agctttagca atatttaatg cacgtgtgat attttgagaa aatacaccgc ctgctaaacc
   124981 atactcagaa tcattagcta tatcaattgc ttcttgatcg tccttcactt taatcactgt
   125041 taacactggt ccaaatattt cttcttgtgc taatttgtga tgattgtctg gcacagcaat
   125101 taatgtcggc tcaaagaaga accctttatc taatccattt tcagttaagc gatgaccgcc
   125161 tgctaaaatt tgtgcatctg attcttttgc tgcatcaata tatgattgaa ttttatctaa
   125221 ttgatcctta ccagtttgac tacccatttg tgtagcttca tcttgtggat ttccaacttt
   125281 aatatttgaa aatgcctctt gtaaacgtgg caccaattga tcataaattt tttcatgaac
   125341 taataatcga gaacctgcac tacatacttc accttggttg aataaaatac ctaactgaat
   125401 accttcaact gcaaggtcta aattagcatc atctaatatg atattggcgc ttttaccacc
   125461 aagctctaat gtagcgggta ctagatgttt tgctgcagct tcggcaactt gataacctac
   125521 atcagttgag cccgtaaatg ataatttatc tacaccatca tgattgaaaa ttgcattacc
   125581 tgattctgaa cctttacccg ttagtatatt gacaacacct ttaggtaata cctcttggaa
   125641 aattttagca acttccaata aacttaatgg tgttgaagac gaaggttgaa tcacaattgt
   125701 attacctgca gcaatggctg gcgcaatctt ccatgcagct aatagcattg ggaagttcca
   125761 agcaacaaca gcacctacga cgccaatcgg ctcatgtcgt acgatactca ttgtgtcttt
   125821 atcgatatca ttcactgtac cttcttctgt ttcaataaca cttgcgaaat aatggaaatg
   125881 tcttgcagca aatggaatat caattgctgt tgtctcacga atcggtttac cattatttaa
   125941 tgtttcaatc attgcaattt tatctttttg tgccattaat ttatcaccaa tatcacgcaa
   126001 catttgtgca cgttctgatt tagaagttaa tgaccatgat tcaaatgcct cttgcgccac
   126061 tttgactgca tgatcgacat ctttatcttt tgctcttgta atatgtgata gtgtttctcc
   126121 agttgctgga ttagtcactt cgattgtttc gtcactgcta cctttaacaa attccccatt
   126181 gataaataaa ccataattct ctgcaatata atctcgaacg tttactgcca tattatctct
   126241 cctttgttta ttggctataa tataaatctc ttagcatcat atttaataat gcttttaaac
   126301 gatatgattc acattatata gtaagcgttt acattttata aaataatcag ctcacagaag
   126361 tctcattttt aaaacttttg cgtcgttttt gcacataaaa ataatcttat tttcgaaaac
   126421 atattgcact tttcaaaaat aaaacacata atataactat aatacttgag aataattctc
   126481 attaaatagt ttggttgtta tgaaagtcgc gcttaaaatg cgttaatgtg acaaggataa
   126541 ttcaacatcg tttcatttta ctgagtcatt gcacttatca tacacattat atttagcatg
   126601 agttatatta ctaaaacaat attacatgcg cattagtact agaatggagt tttttcaatg
   126661 cgacttattt taatcgtcat tggcttaata tttacagcgc ttggtattgc aggtgccgta
   126721 ttacctttac tgccaacgac ccctttttta ctcgtagcag ttttttgttt tgctcgaagt
   126781 tcagatcgct tttacaattg gcttattaat caaaaaattt ataaagaata tgtagaaaac
   126841 ttttatttac atcgaggcta cacgctacaa cagaaaatta aaattttaat tagcttatac
   126901 attgtaatag gtttttcaat ttatatggtg gatgttcttg cagtccgtgt aggattaatc
   126961 ataatggtta tcatacaaac cgctgtactc tttacatttg taaaaacatt acccaaatca
   127021 aatcataaaa tagaggagtg attgcccatg tttatggcag aaaatagatt acaattacaa
   127081 aaaggcagtg cggaagaaac gattgaacgt ttttacaata gacaaggtat tgaaactatt
   127141 gaaggcttcc aacaaatgtt tgtcactaaa acattaaata ccgaggatac agacgaagtt
   127201 aaaatcttaa ctatttggga atctgaagat agctttaata attggttgaa ttccgatgta
   127261 tttaaagaag ctcataaaaa tgtacgttta aaaagtgatg acgatggaca gcaaagtcca
   127321 atattatcaa ataaagtatt caaatatgat attggctacc actatcaaaa ataaatatat
   127381 taaaaacccc tagtcaccgc tggttgtcta aaccaacttc atgattaggg gttttttatt
   127441 atttgtgacg taaaggtacg aattcatccg gcttgtctgt gcgcaatcca aaataatatt
   127501 ctattgcttc acaaatacgt cgtgatgctt gtccatcacc atatggatta ttcgcttgac
   127561 tcatacgttg atacgcttca tcatcctcaa tcaattgttt cacatttcga acaatattgt
   127621 cataatctgt gccaattact ctcgatgttc ccgcctcaac gccttcggga cgctctgtat
   127681 gattccttaa taccaacaca ggttttccaa atgtaggagc ctcctcttga ataccaccag
   127741 aatctgtcag cacgaggtac gattgatttg taaaattatg gaactcaatc gcatctaatg
   127801 gctcaattaa ttcaatccga tttctcccag ataaatattt ttcggcaatc gctcttacct
   127861 ttggattacg atgcattgga taaatgaaga caacatcttt atattcatct gccaaatctc
   127921 ttactgcttt aaaaatctga tgcatcggtt ccccaatatt ttcacgacga tgcgctgtta
   127981 gtaaaacaac tttcttgcct ttatgtttat taataatcgt tgaaacaaaa tcattttgaa
   128041 ctgttgttga caatgcgtca ataactgtat ttccagtaat aaagatacgc tctttgtctt
   128101 tgttttcaaa aagtaaattt ttagctgcaa ttactgttgg cgcaaaattc aattcagcaa
   128161 tattacttac catgactcga tttaactctt caggaaatgg tgagtatttc tgatgtgttc
   128221 gaagtccagc ttctacatgt ccgaccggaa tttgatgata aaatgctgcc aaacttccta
   128281 caaaagtcgt tgtagtatca ccatgtacta aaatcatatc cggttgttcc tcattaatga
   128341 tgctatcaag tttagcaagt gcattcgccg taaggcctgc taatgtttgt tgatcttgca
   128401 taatatttaa atcatgatca gcttgaatat caaatatact taacacacta tctaacatat
   128461 ctctatgttg tgctgtaatc acaatgttcg cttcaaagtt cccattatga tcaatttctt
   128521 ttactaatgg tgccattttt attgcttcgg gtctcgtacc gaaaataacc ataatttttt
   128581 tcataacatt atcctctctg aagttcaaac acatgacagc ttatctttcc ttaatcatgt
   128641 atgccctagt ttgacacatt ttatttgtcg ataaaattaa atatattgcc ataattataa
   128701 tacgatacat cttcaaatga tgatttcaca acattttttg tatcaaaaat cactttatgc
   128761 ttcattttat caaaatgact gtccgataaa tttttaaatt ctgagtggtc acttaaaatc
   128821 aatactagcg atgcgtcttt gacagcatgt gacatatcat gttccacaaa atctaattca
   128881 acatgtggat cataagcaca tacttctatg tctggttctt gatttaatag ctcataaata
   128941 tcaaatgctg gtgattctct tatatcatca acatcacctt tataagttaa accaaatact
   129001 gtgactttat tcccgctcaa cactttgatg atttgcttcg ttgtatcaac aacataggcc
   129061 ggcattgaat tattaatttc acgtccagtt tgaattaact ttgcattttc agggtcttta
   129121 gcaataataa agtacggatc aacagctaaa caatgaccgc ctacacctgg accaggctga
   129181 tggatgttaa cacgcggatg tttgtttgcc atttcaatca catctaatac attaatattt
   129241 aagttattgc aaatttttgt taattcatta gctaaagcaa tgttcacgtc tctatatgtg
   129301 ttttccatta gcttactcat ttcagcagta cgtgcatctg tttcaatcat ttctccctga
   129361 acgaatgtgc gatagacacg tttacccgct tcaatacaag cttcagtcac accgccaatg
   129421 atacgattgt tatgaactaa ttcttctaaa atttttcctg gcagtacacg ttctggacaa
   129481 tgcactaaat aaatatcttc acctattgta aaccctaaat tttcaatgac tggttttaca
   129541 aaatcatcca tcgttttagg cgcaattgtc gactctacaa taatggtatt tcctttttct
   129601 aaaaatgata aaatactatc taatgcacgc ataactagcg aaatgtcaca tgaccggtac
   129661 tgatcatcat tattcggcgt cggaacggca atgataaaaa catcagatgc atctggcgtt
   129721 gtagatacct tcaattttcc cgatgacagt acctcttcat aaacctcttg taatccaggt
   129781 tcttcaatac taatttgacc actttgtaac ttatcaatcg tttgctgatt aatatcaaca
   129841 ccaagcacat cgacgccatg ttttgcaaac ataattgatg ttggtaaacc aatataacct
   129901 aagccaacta ctgttaactt catactataa cctccaaata aaacgatttg tatgttgatt
   129961 ttatttaata gatgacttat gccttatctt tggttgtcgt ttcatccatg atgtccgcaa
   130021 taacaagtga catttttcca ggaataattt caagtgcatt attattttca tataacgtat
   130081 tgctgtatat taaattgccg aataattttc taaagaccga caacttatta aaatacttat
   130141 ttagcattga aggcatgttg atcaataccg ttttacgatg tgattggcga cgtatttcat
   130201 acattactga cgatgtatca aagtaaaaac tatcttgagg atggtacaca cctgtcactt
   130261 ctaatgatat taattgatca ataaatgctg tcagatgttt aatatataat gcactgcgct
   130321 gattgttaat attgggaatg attggcaatc gctttgacaa ttgcattaac cgttggaaat
   130381 ttcctgggca atgtgcacca taaatcattg gtggtctcac aattgctact ttaaacgaat
   130441 cactaatcaa ttcttgtaat gcttgttcag cgaacttttt ggaaatacca tagttggtcg
   130501 tagggttcat tggtgtttgt gtatcaactt gatctgattt accaacatga ccttcttttc
   130561 cataaactgc catagtactc ataaaaataa attgtttaac gtcttcagct ttagcctttt
   130621 gtgccaattg tttcgtcagc aacatattca cttgcatata atcagatagc cttgcttgag
   130681 gtgaattgtt gtgaaccaaa gctgctgtat gaattaaaac atcataatct ttgaacgagg
   130741 tcgacttcca taattgattc ctaacattaa tttgatctac ttgatgtcct tgttcaataa
   130801 gcttatcttt taaagcatta ccgatatatc catgtacgcc tgtaattaaa atattttttc
   130861 tcattagtga tgcacacctt ctgaagtaac gatattttta attgttttat atatgatata
   130921 catatcaagc atcatagatt gatgtgttaa gtaataatga tcatacgcta ctttttgatc
   130981 atcagtgata tcatctctcc ccatcacttg agctagtcct gtcacacctg gtctaatcgt
   131041 atgcacgttc gcttttgtac gtttttcgat taattcgtat tgattataaa gcgctggtct
   131101 aggacctaca attgacattt ctccttttaa aacattcaat aattgtggca attcatcaat
   131161 agaggtctta cgaatgacct tccctgtctt tgttatatac gatgttgaat ccattaaatc
   131221 agttgcaaca ttaggtgtgt ctattttcat tgatctaaac ttataaatat taaacaattc
   131281 attattaatc gtcggtcttt tttgtttgaa aatggctggt ccaggtgatt ccattttaat
   131341 tagtaatgct gtaattaaca gaatcggact taaaactact aaaccatata ttgaactcac
   131401 tacatcgaat aatcgcttca taattatctc ctcacttcaa cagattgtaa tacttcatag
   131461 tattaatttc tctcgtatat ttatctttaa acagttgatg tgcgcgctca cccatctcgt
   131521 gcaattcctt actcgagtga gtgttgatga agttataaat ggcatgtgca tcgccattat
   131581 caatttggat acccgcatca tattgttcaa catgttgaac gatatcagat tgcttatcca
   131641 tgatgagtac caacgctttc ttagctgcaa gatagccata attcttgctc ggcacgccta
   131701 aaccgacgcc ttctttaatc agcgatgcaa tacatacatc cgcaattttt aatacgtcag
   131761 catagtctgt acctgttaaa aactcaaaca ttttaacatt ttcaatacga tggtcttcta
   131821 ttgccgtttt gacatctgca aatttcttac catgaccaca aagtattgtt aacgtttgag
   131881 actgatcctt atttaatttt aaaaatgaga taagtgtctc catatcctgt aactgcccca
   131941 tattaccgct atacaataaa attttgtcgt attgctcacg gtaagcttta aatgtgtcat
   132001 tatagatacg attgtcttgt aattgacgca tgtcatacca gttaggaatc acatggatat
   132061 tgtcagcatt tttagaaatt tgatgattta gtaagtagtt tttcatttcc gtaccaagga
   132121 caatgacatt ttcagcattc ttgtagacat gtctattaat gtaacgcatc agcttatcaa
   132181 tcatgctacc tggacgagtt gcacctgtct taatcgcatt atcaggtgct atatcataca
   132241 ccacaaaaga atattttttc ttaagcagtc tgtgtaaaac gtctggtatt aatggcaaga
   132301 ttggtggatt agagtaaaca agaatctgat catatttcaa cattttaggt atattaatca
   132361 cgaattttga aaataaacta aagaaattga tgatccttcc aaccttactt ttgttattaa
   132421 acctcgaata cttgagacgt cgaatgcgaa taccacgatg catctcggtt ttagaaacct
   132481 gtttatgatt actatattca tatggccatc cacacatgac atcgacatta atgtgattcg
   132541 caattaaatc ttccgccaat tgagttggta acgtcgcaga agatacatat tccggataaa
   132601 aatactgaca taaaatcaaa atcttttttt cactcatcta atcgacgtcc tttttattaa
   132661 tgaatttaga ctttaaacct ataatattta aaatcacata cttaataatg ttgctgaaca
   132721 gcgttgtcca aaagaatcca tttagaccaa acgcaattgt cattaaaata gttatgaata
   132781 taaatgtaat cgtgtgaagc gtcatataat tcgcttgtaa tgttattgat gcgtgttttg
   132841 tatttaaagt ttggatcata atactcactg cattgaataa aacacctata ttacctaaaa
   132901 taataaactt cgaatataaa cttgaatcaa tgttatacag taaagagaca ataattattg
   132961 taattggata acatataatc atgactaaac atagggcagc tatagcaatt agattagttt
   133021 tcaaatattg cttctttata ttgtcacttt catttacaga aatatatgaa agtactacat
   133081 tattaatcgg atatagaaat gtagctaaca ttttcccaat aaatgttgaa agaaatgata
   133141 tagttacagc tgttccacct ataattggta ataagattaa tctatctaaa tagagattca
   133201 aattattaag gctatttgta ctcagtagca tcacataatc ttttaccaca ttattatctt
   133261 cactttgata ctcgcctata gttaatcccc gtaatttaac caatgtatat atcgttgcaa
   133321 acaattcact ggtaataaaa caaacaatcc agttttgggt taaataatat agaaatagtc
   133381 ctatcagcaa acctaaaaat tgaataagag caatatacaa aatctgatta tattttaaag
   133441 tcatcctaaa aaatacattc agataaatcc ttaaacacat taaaatatta agtagaatta
   133501 aaaagataat atcgatgatg ttcaaattaa aaaagtaaag aaatacaata attaaagcta
   133561 tactctcaat cagaattgag attaaaagta tcgatgcaaa tttccagtag taatgattgg
   133621 atttgtatag attcatatta atcaatcgta tattgttaag cgtattgcct aatacaacac
   133681 tcgtgattgt tattattgta taaatcgtta aaatagaacc gaacgcttca ttacctactc
   133741 gttgattaat aattggataa gctaaaaatt gtaatcctaa agctataagc aacgtaccaa
   133801 ttattgtctt tacgctatcc ataataaaaa ctttcttagc catgatgacg ccgtcctttt
   133861 gtaataaaat agaacaacac aaaccaaaat tcacttacaa ctaaataatt tgaactaaac
   133921 attaataatg tgattggata gattgctata aacataacga gtaaatctat agtgtttgga
   133981 tcatagttcc taatcatttt ataaactagt agcaaaatgc aaatcattat gataaaaaac
   134041 cctaataagc caaatgatag aatcaactca ataatgatgt tatgtggtat atttccgatt
   134101 agtttataat agttaaatgg cccatagcct aataacgaac tttgttgaat aaagtaaata
   134161 cctttttcat aaatcggtcc tcttccagaa gtaccttcta aattaagtgt tccaccttgt
   134221 agatatgaaa atgttctagt attcgaacct tttgtaaaaa gaaagtaaat caatacacta
   134281 gatatgctta atgcaaaaat atacataatg ctttttactg cgataggtat tcctctttta
   134341 aacgtaataa gtataaatgc aaataagccg taaagaatta ataaaatagc acctccacgc
   134401 cctcctggta taaacacaat agggatatca attattgtaa atagaacata tatccactta
   134461 tgtttaactg aacctttcat aatgaaataa atgcctaatc cggcagtaaa tgctgaaagg
   134521 tacgaagcgt tttgatagtt cataagtcca aaattgatat agctaggtat ctcacctgta
   134581 agttttggta ttaaaattac aaaaataaat gaaacagaaa atatgaaaaa tactaattta
   134641 aaaaatcttt ctaccgtagc cttgtttata tatttaatat aaataccact aattgccgct
   134701 ggaactgccc atgttaaaaa gaatagaata ttatttttag ctagtttctc ttccttatct
   134761 ggtgaaaaat aataaaaagc tagataaagc aaacatatag caattaataa tattaaccct
   134821 cgcggaattt cttgggtgac aattatctta taaatagcaa acaccgtagt aattaatgct
   134881 ataccaacca tggttgagta atacaccggc tctataggga accctaatac ttctttagta
   134941 aatgtagaga ttactataaa tatgttcatg ctgataattg cacaaagtac aaaaaatttc
   135001 atagtctacc tctctttaaa atttatataa ttctactaac cgttcactct ctatttgcca
   135061 attcaaaatt ttagacgcct taattgcatt ttgacgtaaa tgattaaaca aatcgtgatt
   135121 atctcttaat tttctaaccg ccttttcaat ttctaacggc gtaacttcct ttagaacaat
   135181 gccaaattta tatttttcat tgagataaat atgctctttg acaggagata aaattactgg
   135241 taaaccagca tgtatacatt caaaaatttt attagatact gtatattcaa aattaataga
   135301 tactggtttc gtcaagacaa caccaacatt actttctgct aacttatcaa ccaattcttt
   135361 tacttcaact ggtttatcca acctaatatt ttccgggtta taactaatca gttcttttat
   135421 cacttcttca tgcggaccaa accctcgaat tatgaatgaa ggagcatttt gtttaaaagc
   135481 tgatgaagca ataataaact cttcatatcc tctgtccatt acaatttgac cttgatatac
   135541 aatttcttta aagttttcga tttctttaaa ttctctgcta tcatttaaaa taggtgcatt
   135601 cgtaataaca ttcgcttcct tcttatatcc tttagattga taatattctt ttgctgcatg
   135661 acttactgtt acgaaggcat taacacgatg ttttactatg tgtttttcta tactttctac
   135721 aaactttgaa ataagtggaa ctttattaat aaaggcattt ttcgcatata tttcatgcgc
   135781 atcataaaca atattagctt ttttataatt gcttaaatag accattaata atacgtcgaa
   135841 atcatttgca tgaatcacgt caggtttata agctttaatt tctcggataa cacctgttgc
   135901 aaatcttata cgcttaatta atttagaaag aatatttttt ggatctacct tgctacctaa
   135961 caaacgataa ttacaatcta aattttccaa tcgcttatta gtagcttgtg aattattcat
   136021 tccaacaatt ttataatcat ccgtaacgcc tttaattgtt tctatttgtt taagtaccct
   136081 tgggtcttga acaatattac tcgatacaat atttaaaatt ctcatatcat taagtatcct
   136141 ttttatttaa atattcaacc gaaaatcctt ttagtttgtc aggcgttttc tcccaccact
   136201 tgctttccaa aagtttttca attgttttat tgtcaaatcg cttcttaatc acttttgcag
   136261 gaacaccacc aacaacctca tatgctccta catttttagt aacaactgag ccggctgcta
   136321 tgactgcacc agtatttatt gttaaaccat ccataataat tacatttgca ccaatccaca
   136381 catcattttt aattgttgta cggcttggtt ggtcattaaa gtctataaac ttttgcttta
   136441 tgttaaatgg attattatta gaataaaaaa tcggtgatga gctaaaaaag tgtgtaggat
   136501 gttttcctaa cccaattttt acatccgaag atatcgaaca atatcttcct acttctacat
   136561 tattaaaatc actaccaaat ccaatataac tgtattcacc aatgtgagaa ttcctgattt
   136621 tacaccatct atctatatag ttattgccat caaattttga gtttgtaata tacgccaagc
   136681 gatgaatctt aacattcgat tctttagagg actggttttt cagcaaacca attatctttt
   136741 caatcgctat cctcatcgtc atttcctcca agtatttcga ttgataatat ctttatagct
   136801 ttgaataatt ttaactacct ttgtcgaaac gttagtgtct ttataatcaa tagcatcaat
   136861 catcggttcg ttattgtttt gcatctctct tgctagttca acggattgga ttagattgtt
   136921 ataggtaata ccacctacaa taaccgtacc tttatctagt acttccggtc tttctgtgga
   136981 agttcgaata aggacaccag ggaacttcaa aatagacgac tcttctgaca atgttccact
   137041 atctgatagc acaacaaatg catctttttg caatgcatta taatcaaaga aaccaaatgg
   137101 ctttaactgt ttaactaatg gatcaaattc aaatttactt tcttcaattt tcttccaact
   137161 tcttggatgc gttgaataaa tcacaggcat tttatacttt ttggcaatat catttatcgc
   137221 attcattaat gatttaaaat tcttttcatt atcgatattc tcttctctat gcgcagatac
   137281 taaaatgtat tgttgcggtt ctaatcctag tttatttaaa acgtcactgt gattaatttt
   137341 atctcgatgc gcttctatca cttctgtcat cggtgatcct gtcacaaaga tattcgcttt
   137401 attgaggcct tcatctaata aataacgtct gctatgttcc gtataaggta gattcacatc
   137461 actgacatgg tcaacaattt tacgattgat ttcttcaggt acattctgat caaagcatct
   137521 attacccgct tccatgtgga acacaggaat ctttaatcgt ttagcagata ctgctgctaa
   137581 acaactattt gtatcaccaa gaattaaaag tgcatctggt tgttcgcgta ataaaacatc
   137641 atatgtcttc gcaataatat tccccatcgt ttctccaagg ttacttccaa ctgcctctaa
   137701 gtagtggtcc ggttgtctta attccaaatc atcaaagaaa atttgattca atgtataatc
   137761 ataattttga ccagtgtgta ctaatatctg attaaaatat tgatcacatg ctttaatcgt
   137821 tgatgataaa cgaatgattt caggccttgt accaactatt gtcattaatt tcagtttttc
   137881 catgcgctat acctccaaga aatacgtatc tggctgattt ggatcaaaca tttcattcac
   137941 ccacataata gttaccatat ctgtgtcgcc taaattttca atattatgtg tgtatcctac
   138001 tggtatgtct acaacttcta atttgtcgcc agaaacataa tattcaatga tttcatcatc
   138061 attaacatgt ctaaaacgaa ttaccccttt acctgatacg actagaaatt tttcgttttt
   138121 agtatgatgc cagtgattac ctttagtaat acctggttta gaaatattta cagaaacttg
   138181 accacgatcc ggtgttttta taaattctgt aaaagaaccc ctatcatcca cattcataag
   138241 taagggataa ctaaagtctg tactaggtag atagcttaaa tacgtactat acaaatcttt
   138301 ttcaaacaag ttatctaatt tcggcaatgt tcgatcgaga cgtgactgtt tgaacttgta
   138361 taataaatct acaatttctc ccaatgtcac tttaaatacg tttggtactg taggtacacc
   138421 attttcaatc gttggagttc cttcaatagc acgctttatt tcagcgacga tatcatccac
   138481 gtagtttagc gttagttcaa cattccgatc attaacttga atctcttcgt tacgtgcaat
   138541 tttgtaacaa aatgttgcta tcactgagtt ataattcggc ttacaccact tgccgaataa
   138601 atttggccag cgataaatat aaaccgtatt gccatactct tcggcatact ctcttaatag
   138661 ctgttcccct tgcaacttac tctcaccata aggattatct tgtgttgctt gtattgaaga
   138721 cgataataat atcgctggct ttttcgtatt tctagttaat atatcaagta catgatctaa
   138781 ataactcacg tttcctaagc tgaattcttt gtcatgttca ggtcgattaa cacccgctaa
   138841 atgcacgaca aagtctgctt tcaacaatgc tgactctaat tcttcctctt tagtttgtcg
   138901 atgtacttcg aaaatatgat gatctgtcgt tgaagttaaa tctgctttca agttttttcc
   138961 tacaaaacct tttgctcctg taattacaat attcaacgtc aatctctcct atctcattga
   139021 agctttataa tcattcaatt cgtttctaac atattctagt gttaaaagtt tttcttttat
   139081 ctcttccacc gttaaaatat gtgtattatc ggagttatat tcataagatt gcgtaatctt
   139141 ttcgttaccg gtttcaacat aattactata atttaaatct ctggagtctg ccggcactct
   139201 aaaataatca cccatatctt cacattgtgc gtattcttct ctcgtcaaca atgtttctgc
   139261 ttttttctct ccatgtcgcg taccaatgat ttcaattgca ttatcagctt caaacaattc
   139321 taataatgcg gtcgcaagat cccctaccgt tgagcttggt gctttttgaa ccataatatc
   139381 tcctgtctct gcatgcttaa atgcatgaac aactagttct accgcatctt ctaagctcat
   139441 taaaaatctt gtcatatcag gatctgtaat cgttaaaggt tctccagctt tgattttgtc
   139501 gataaacaaa ggtattactg atcctcttga agccatcaca ttaccgtatc ttgtaccaca
   139561 aataagcgtt tgttcactac gaatatttct tgatttggct acgaatactt tttccatcat
   139621 tgcttttgaa atacccatag cattaatagg atacgctgcc ttatctgtag ataaacatat
   139681 gactttttta acattttgat gaatagcact ttgtaagaca ttttctgtac caataatatt
   139741 tgtcttcact gcctcaactg gaaagaattc acatgacggc acttgtttta aagctgctgc
   139801 atggaatacg taataaacat ctcgcattgc tgtttctaca ctttgactat cacgcacatc
   139861 accaatgtag aactttaatt ttgaattatt atattttttt cgaatgtcat cttgtttttt
   139921 ctcatcgcgt gaaaaaatac gaatttcttt aatattagaa tctaaaaact gtttcataac
   139981 agcattaccg aatgatcctg tgcccccagt aattaataaa attttgtcat cgaacataat
   140041 tatctccctt tttgccattg gcatagttaa taattttttc tttactaaag tcattgacga
   140101 tgtcttgaat aatcgcttca acttcattac atttcatatg ttgtactttg ccacgataaa
   140161 ttttttcaaa tacttgttca ggatgaacct catctttatt cataagctct tcaaacattt
   140221 tttcgccggg tctaatccct gtataagtaa tgcgtatgtc gtcttctttt ttaccactta
   140281 gcttaattaa attacgtgcc aaatctacaa ttttcactgg ttctcccata tctagcacaa
   140341 atacttcgcc accttctgct aatgcccctg cctgcaaaac tagtctagaa gcttcaggaa
   140401 ttgtcataaa gtaacgtgtc atttcaggat gtgtcacagt aactggccca ccttcttcaa
   140461 tttgactttt gaaaagtgga atcacagatc ctctcgatcc aagtacatta ccaaatctca
   140521 ctgcaacaaa atttgttcga tgcgtttcat catttaaact ttgaataatc atttctgcaa
   140581 ttcgctttga agctcccatg acattaggcg gattaacggc tttatccgta gaaatcataa
   140641 cgaatttctt tacctctgca tttttagcag cttcagcagt atttttcgta cctaaaatat
   140701 tattacgtac tgcttcttca gggttgtctt ccattaacgg cacgtgcttg tgtgctgctg
   140761 catgataaac tgcgtatggt ttatacgttt ccataatttc aaacatacgc gctctatttt
   140821 gcacatccgc tataatagga acgatatcaa catttttttc cgaagcgatt tcgcaattca
   140881 cgattgatta aataaatact gttttcacca tggccaagta gaataatacg ttctggatag
   140941 aaattacaaa cttgtctaca aatttctgat cctattgaac cacctgcacc cgtaactaaa
   141001 atagttttat tcgtcaattc atttgatatc atatccatat ctaattcaac aggatctctg
   141061 cctagtaaat cttctacttc aactttttta agttggttca cttctaactc accagacatg
   141121 acgtcttcta tatttggcat tttcaataac tcaacgccat ccatatggca aatattatta
   141181 atttctttca aacgctcttg accaatagtt ggaattgcaa tgatgatttt tttaatctta
   141241 tatttcctca ctagttctgg aatatccgca attttacctt ggacttttac accctcagta
   141301 attgtgatat tgcgtttatg ttcgtcatca tcgactgcta ataccggttc aagtttcatt
   141361 tcgtcacttt tcaacatttg tctaatcagc attgaacctg cttgaccagc accaacaact
   141421 aaagttggct tcttattaaa tgacttacct ccaaggtatt tccgataaat acgccaaaat
   141481 aaccttgagc cacctattaa aatcaagtgc atcatccaag taattaaata caatctaaaa
   141541 aacggtctat tgcctgtaac aattgtcacg accaccatcg taataacgat agatgtcgtc
   141601 acagctttaa caattaaaat caattcactc acactggcat attcccacgc tcgatgatac
   141661 atattaaaaa taaatgctga aatatgatgc gatatgaata gtgatatagc tgccaatatt
   141721 aataatttga cagaatatgt tttgaaatac ggttctaaaa tgtaataact tacgaatact
   141781 gaaaatgtca ctatcagtga atcgattaat gctagtatta aaagccgcaa tttcacagat
   141841 aaatgtgcca taaaacccct catttgctgt ttataaccca aaccatcttt tctgtttata
   141901 atcttgttgt ggcattcgtt taggaatttt tttatcatca acaactaact tcgcattact
   141961 aataaatccg ttcatatctt cataataatc acgtaatttc ttatcattaa ataagtcttt
   142021 cattaagaac ggtctgattt ctgtgttatg cgcatctgaa ccgatgaaat gtgtcagatt
   142081 gttttcaatc atttgaattg ctaattttct aattttttta ccggaaatac ccgctaatga
   142141 cgccgttgtc acttgactta aagcaccttt gttaattaaa tcgtatagta tgtcaaggtt
   142201 ttgccttatt gctttattcc gctctggatg tgcaataatc ggtacaaagc ctttactctg
   142261 taattcgaaa aataattgat cagtatagtg tggaacttca tttgatggaa attctattag
   142321 taaatagcgt gaatcattaa taccgttaat aacttttcga tcaatatcat taaggatttg
   142381 atcggtaatt cttatttcct gaccataata aaactttaga tttagtgctt gtacttcctc
   142441 taagctttca atatggttta aacatgattt cactttttct ataggtgtgg tatatcgagg
   142501 atgtaagtga tgtgatgtta caatgatttc tgtaacacct tgtgttgtcg cttgttttaa
   142561 aagatccatc atctctgttt catttgtcgg accgtcatcg atattaggca atatatggtt
   142621 atgaatatca atcatactta ttcatctcca taatagtgat aataactaga agatttatcg
   142681 acctttgtct tgttcaaaat gacacctaga atgttactgc ctgctttttc cataagtgct
   142741 tttgcttttt taacttcatt tttatcattt ttttcactat caattactaa cagactatct
   142801 ttaatagcac gcgcatatag ttgtgcatca gtcacagtat taactggcgg tgtatcgaca
   142861 ataataatgt cgtaacgttt attaaacaga tcaactaatt ctttgaacct ttcagaccca
   142921 attaactcag atggatttgg aggtacaggg ccagctgtta gcaaatctaa attttcaatt
   142981 tctgtcgacg taattgcttc tgacatagtc gttcgaccaa tgattaagct tgatagtcca
   143041 ttattatttt gctcattaaa aatatagttt tgtgttggct tacgcatatc gccatcaata
   143101 actaatgtct tatagcctgc ttgtgcataa gtaatcgcta cattcgatac aactgtactt
   143161 ttacctgcac caggcttttc agaagtaacc aataagcgct ttacttcacc atttgctttt
   143221 gaaaacatga tgtttgaacg tatacctcga aacttttcac taattgttga ttttggtttt
   143281 tcatatacaa atagtgttgt tgtcgtattt tccttttttg acataagtag caaccatcct
   143341 taattaaatt tttgaattga acccaataca ggcaatccta attctttctc tacatcttct
   143401 tcatctttaa ttcgcttatc gaaaattact ttgaagaaga tatatataag cgcgacaact
   143461 aatcctaaaa agaatgcacc gattagattc actacagttt ttggtgcgac tttaactgct
   143521 gtaccgtctg ctttagataa aattgatacg ttatccacac tcataatctt cggaatttgt
   143581 ttacttgtaa ctttagcgaa gctattcgca attttttccg aatcttgttt atgaccactt
   143641 ttaacttgga tgttgataag ttgcgtattt tcttggtttg taattgtcaa catactcgac
   143701 aatttagatg gtgaatactt atcatttaag tcctttgaca cctcatctaa aattctagga
   143761 cttttaacaa tttctttata cgtatttaca agttgaatat tactttgaac ctcttgcgcc
   143821 ataaactgag gattgtcacc cttagtttga ttcactaaaa tttgagtatt agcttgatat
   143881 ttaggtgata agacgaaaaa tgtaacaata gcgctaataa ttaaaaataa tagcggtaaa
   143941 ataattaaaa tcttcaagtt tttttgtaat acttctttaa ttttt
//
LOCUS       DAMQWL010000002        79103 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.002, whole genome shotgun sequence.
ACCESSION   DAMQWL010000002 DAMQWL010000000
VERSION     DAMQWL010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 79103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 79103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..79103
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.002"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            153..857
                     /locus_tag="PF788_000121"
     CDS             153..857
                     /locus_tag="PF788_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDG6302416.1"
                     /translation="MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYS
                     IAIHSDVTSNKKRYYKSYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTI
                     VPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKL
                     LSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISED
                     DMNEIEKQLKIKFFSN"
     gene            1250..1786
                     /locus_tag="PF788_000122"
     CDS             1250..1786
                     /locus_tag="PF788_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302417.1"
                     /translation="MHNNNEFNKKLKDFIGSDKRMALVKGYVNEYKLTTVLRALNNSD
                     YTKGTIHTRSIGNLKQIVDNRIIPKNITQNTIFKLSNLTLEVNLYERNTIYHGDFAIY
                     YPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQE
                     DPKQYEILYKNKHGKLPY"
     gene            complement(1899..3440)
                     /gene="guaA"
                     /locus_tag="PF788_000123"
     CDS             complement(1899..3440)
                     /gene="guaA"
                     /locus_tag="PF788_000123"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDG6302418.1"
                     /translation="MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIE
                     EIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVER
                     ANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIE
                     DKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCRGQWTMENFIEIEIEKIRQRVGD
                     RRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNI
                     IRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIE
                     SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFP
                     GPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGD
                     YRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPS
                     TIEWE"
     gene            complement(3465..4931)
                     /gene="guaB"
                     /locus_tag="PF788_000124"
     CDS             complement(3465..4931)
                     /gene="guaB"
                     /locus_tag="PF788_000124"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002955225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDG6302419.1"
                     /translation="MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNI
                     PVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFL
                     TPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQE
                     NLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHG
                     RLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLV
                     AGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHG
                     KAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGS
                     LGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSH
                     DLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF"
     gene            complement(4969..6237)
                     /locus_tag="PF788_000125"
     CDS             complement(4969..6237)
                     /locus_tag="PF788_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000793018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDG6302420.1"
                     /translation="MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDI
                     FMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVII
                     IAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTL
                     IIILLLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGF
                     SFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIF
                     NSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAM
                     IAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQ
                     NGIVLGAISAIILNFFFNGIKYKQTEENVK"
     gene            complement(6237..6815)
                     /gene="xpt"
                     /locus_tag="PF788_000126"
     CDS             complement(6237..6815)
                     /gene="xpt"
                     /locus_tag="PF788_000126"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDG6302421.1"
                     /translation="MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYE
                     QFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKN
                     KTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQN
                     GHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE"
     regulatory      complement(7046..7148)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00167"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="purine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="guanine and/or adenine"
                     /db_xref="RFAM:RF00167"
     gene            7328..7735
                     /locus_tag="PF788_000127"
     CDS             7328..7735
                     /locus_tag="PF788_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HDG6302422.1"
                     /translation="MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLH
                     DSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAV
                     RDKSSHQEVHENNSAYEEIDITHFAEASKGPKA"
     gene            7878..8540
                     /locus_tag="PF788_000128"
     CDS             7878..8540
                     /locus_tag="PF788_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302423.1"
                     /translation="MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNK
                     TENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHE
                     LNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHP
                     TNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRK
                     PF"
     gene            8658..9614
                     /locus_tag="PF788_000129"
     CDS             8658..9614
                     /locus_tag="PF788_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302424.1"
                     /translation="MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDF
                     KEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVED
                     LRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQ
                     EAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTAT
                     KVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASK
                     QATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL"
     gene            complement(10405..10506)
                     /locus_tag="PF788_000130"
     CDS             complement(10405..10506)
                     /locus_tag="PF788_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302425.1"
                     /translation="MQLNVNMMKFDRWHKGICKQIVLNSVVIGGKGK"
     gene            10591..11979
                     /locus_tag="PF788_000131"
     CDS             10591..11979
                     /locus_tag="PF788_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDG6302426.1"
                     /translation="MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVF
                     GVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKF
                     AKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTA
                     HTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRA
                     IDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYI
                     IHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFA
                     ATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGA
                     TFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDT
                     FDSNDNAALTSH"
     gene            complement(12060..12815)
                     /locus_tag="PF788_000132"
     CDS             complement(12060..12815)
                     /locus_tag="PF788_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HDG6302427.1"
                     /translation="MSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFL
                     QAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYG
                     STEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFG
                     MAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGN
                     RKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR"
     gene            13307..13876
                     /gene="ahpC"
                     /locus_tag="PF788_000133"
     CDS             13307..13876
                     /gene="ahpC"
                     /locus_tag="PF788_000133"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002445177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HDG6302428.1"
                     /translation="MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPAD
                     FSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDP
                     SQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYV
                     RKNPGEVCPAKWEEGAKTLQPGLDLVGKI"
     gene            13892..15415
                     /gene="ahpF"
                     /locus_tag="PF788_000134"
     CDS             13892..15415
                     /gene="ahpF"
                     /locus_tag="PF788_000134"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HDG6302429.1"
                     /translation="MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEIT
                     DMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKE
                     KQSIIDQIKKLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREE
                     SENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASG
                     SAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDID
                     AMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAF
                     CPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRS
                     LSNVDIKTNAKTTEVVGEDHVTGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDA
                     VELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN"
     gene            15545..15787
                     /locus_tag="PF788_000135"
                     /pseudo
     CDS             15545..15787
                     /locus_tag="PF788_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000887771.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            15860..16486
                     /locus_tag="PF788_000136"
     CDS             15860..16486
                     /locus_tag="PF788_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NDxxF motif lipoprotein"
                     /protein_id="HDG6302430.1"
                     /translation="MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKK
                     LETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTE
                     KQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDI
                     EKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK"
     gene            16741..17124
                     /locus_tag="PF788_000137"
     CDS             16741..17124
                     /locus_tag="PF788_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302431.1"
                     /translation="MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNI
                     IIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFIT
                     SIILFTSTIITLAIGGKSVEKNDSP"
     gene            complement(17190..17771)
                     /locus_tag="PF788_000138"
     CDS             complement(17190..17771)
                     /locus_tag="PF788_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDG6302432.1"
                     /translation="MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLC
                     DYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISAN
                     PKYDKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAH
                     QVVIRCLMVYFNKVSRAEAVDLKVENCKPYIIE"
     gene            17949..18158
                     /locus_tag="PF788_000139"
     CDS             17949..18158
                     /locus_tag="PF788_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302433.1"
                     /translation="MTTQSFIFMNIILLDGATQRHPFFICQILAFLFPKFPHINLLLF
                     NPILSTFSNIIIHIDHFHANKKDDN"
     gene            complement(18197..18448)
                     /locus_tag="PF788_000140"
     CDS             complement(18197..18448)
                     /locus_tag="PF788_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDG6302434.1"
                     /translation="MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVG
                     GKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK"
     gene            18748..19011
                     /locus_tag="PF788_000141"
     CDS             18748..19011
                     /locus_tag="PF788_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6302435.1"
                     /translation="MNMHILYNLRTKHNLEIDELAQQLNEKYGTKYEAHQIWEWENHH
                     HEPKFKDAMHLADFFDAPYEMFLESKVKEYQKHLEEVDIRMDK"
     gene            complement(19149..19721)
                     /locus_tag="PF788_000142"
     CDS             complement(19149..19721)
                     /locus_tag="PF788_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HDG6302436.1"
                     /translation="MKLKSLAVLSMSAVVLTACGNDTPKDETKSTESNTNQDTNTTKD
                     VIALKDVKTSPEDAVKKAEETYKGQKLKGISFENSNGEWAYKVTQQKSGEESEVLVAD
                     KNKKVINKKTEKEDTMNENDNFKYSDAIDYKKAIKEGQKEFDGDIKEWSLEKDDGKLV
                     YNIDLKKGNKKQEVTVDAKNGKVLKSEQDH"
     gene            complement(19902..20270)
                     /locus_tag="PF788_000143"
     CDS             complement(19902..20270)
                     /locus_tag="PF788_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HDG6302437.1"
                     /translation="MKTILKTITYLVLTIIGAYAALFILKTIDSHGITDQFNPLVKKD
                     DSYVKTTEVSTRMDDQLRSYSQSVFNKEGKETQLMYTATFDVKPHRYLKITHKGHHVE
                     TFEEVEKEEVPKKALDKLSR"
     gene            complement(20639..21250)
                     /locus_tag="PF788_000144"
     CDS             complement(20639..21250)
                     /locus_tag="PF788_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin"
                     /protein_id="HDG6302438.1"
                     /translation="MFKKYDSKNSIVLKSILSLGIIYGGTFGIYPKADASTQNSSSVQ
                     DKQLQKVEEVPNNSEKALVKKLYDRYSKDTINGKSNKSRNWVYSERPLNENQVRIHLE
                     GTYTVAGRVYTPKRNITLNKEVVTLKELDHIIRFAHISYGLYMGEHLPKGNIVINTKD
                     GGKYTLESHKELQKDRENVKINTADIKNVTFKLVKSVNDIEQV"
     gene            21450..22157
                     /locus_tag="PF788_000145"
                     /pseudo
     CDS             21450..22157
                     /locus_tag="PF788_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002505297.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            22196..23134
                     /locus_tag="PF788_000146"
     CDS             22196..23134
                     /locus_tag="PF788_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDG6302439.1"
                     /translation="MLNFDEQIAKLKQMNIFFNIIDTEKANEILRKNNYFFKLAYFRK
                     NFEKKNGGYFIEFAYLSDLATIDMKLRYTMLHLTLDIEHSLKYLVLKLITENNQEDGY
                     KIIDEFLCIDKSYSNSNFDTNSRTPEEVMETKIKNKNEIFKHMNKRGQLPEKLNKYYQ
                     NPPAWVCIEFMQLGQFVSFLNFYYKKYNDEELRVANILMPLVKNIRNKSAHNQPIIAN
                     LNYDSRLPQYLFEKGNNIGISRNMFGIKNFIDTFATLELHNQVCSNAIIQARYHDLDQ
                     LQKRYKRNESYYNNALAIKRFFIALDKIIDFNRPKV"
     gene            complement(23400..23642)
                     /gene="rpsR"
                     /locus_tag="PF788_000147"
     CDS             complement(23400..23642)
                     /gene="rpsR"
                     /locus_tag="PF788_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002484306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDG6302440.1"
                     /translation="MAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKI
                     LPRRVTGTSAKYQRMLTTAIKRSRHMALLPYVKEEQ"
     gene            complement(23694..24197)
                     /gene="ssb"
                     /locus_tag="PF788_000148"
     CDS             complement(23694..24197)
                     /gene="ssb"
                     /locus_tag="PF788_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDG6302441.1"
                     /translation="MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGER
                     EADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSRNYENQEGRRVFVTEVVCDSVQF
                     LEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
                     SDDDLPF"
     gene            complement(24218..24514)
                     /locus_tag="PF788_000149"
     CDS             complement(24218..24514)
                     /locus_tag="PF788_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDG6302442.1"
                     /translation="MRTYEVMYIVRPNIEEDAKKALVERFNGILATEGAEVLEAKDWG
                     KRRLAYEINDFKDGFYNIVRVKSDNNKATDEFQRLAKISDDIIRYMVIREDEDK"
     gene            24758..24949
                     /locus_tag="PF788_000150"
     CDS             24758..24949
                     /locus_tag="PF788_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302443.1"
                     /translation="MNLNIDWSKDFQEFQEILNSGIHPEWLYCAKANLVLEPAYTGEG
                     KQFFSTQDIINASKIIPFF"
     gene            complement(25035..26132)
                     /gene="ychF"
                     /locus_tag="PF788_000151"
     CDS             complement(25035..26132)
                     /gene="ychF"
                     /locus_tag="PF788_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDG6302444.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIV
                     EVPDARLLKLEEMVQPKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQ
                     VVRAFDDDNVTHVAGRVDPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM
                     EVRILTTIKEALENGKPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDDDN
                     DKVKAIREYAAQEDSEVIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTY
                     ELLGLSTYFTAGVQEVRAWTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGG
                     ESGAKEAGRQRLEGKEYIMQDGDIVHFRFNV"
     gene            complement(26144..26347)
                     /locus_tag="PF788_000152"
     CDS             complement(26144..26347)
                     /locus_tag="PF788_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HDG6302445.1"
                     /translation="MASKYGINDIVEMKKQHACGTNRFKIIRMGADIRIKCENCQRSI
                     MIPRQTFDKKLKKIIESHDDTQR"
     gene            complement(26377..27258)
                     /locus_tag="PF788_000153"
     CDS             complement(26377..27258)
                     /locus_tag="PF788_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDG6302446.1"
                     /translation="MNQVMNIISSLFEPLTKIETYENIATKIAMIVIYIIVALIVIKI
                     LNKMIEQGFKIQNKSKKSNKKRSKTLISLVQNVVKYIVWFIVITTILSKFGISVEGVI
                     ASAGVVGLAVGFGAQTIVKDVITGFFIIFESQFDVGDYVKINNGGTTVAEGTVKSIGL
                     RSTRINTISGELTILPNSSMGEITNYSITNGTAIVKIPVSVEENIDNVDKKLNKLFTS
                     LRSKYYLFVSDPVVIGIDAIEDTRVILRISAETIPGEGFAGARIIRKEVQKMFLQEGI
                     KTPQPIMTAYNHSENGV"
     gene            complement(27415..28260)
                     /locus_tag="PF788_000154"
     CDS             complement(27415..28260)
                     /locus_tag="PF788_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HDG6302447.1"
                     /translation="MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHL
                     NDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRASKIAGLKYVSAIIKDLTDEDMM
                     ELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
                     KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSK
                     SETDKVDITKPKFIKQQERQLREQYGTKVDISIKKSVGKISFEFDSQEDFVRIIEQLN
                     RRYGK"
     misc_binding    28489..28858
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            28924..30027
                     /locus_tag="PF788_000155"
     CDS             28924..30027
                     /locus_tag="PF788_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDG6302448.1"
                     /translation="MKDTQLAQITLTDDSTGAIANPIHLSTAYKHPKLGQSTGFDYTR
                     TKNPTRSTFETCFAKLEHGIASFATSSGMSAIQLICNLFKPHDEILVSFDLYGGTFRL
                     FEFYEQQYDIKFKYVDFTDYEQVEKEITDKTVALFIEPISNPQMIAIDVKPYYQLCKA
                     KGLLSIIDNTFLTPYLSTPLAEGADIVLHSATKYIGGHNDVLAGVVTVKDESLAQQLF
                     DFHNMTGATLSPIDSYLLLRGLKTLHLRIERAQSNARKLAKKCQSLQAIDEVLYSGQT
                     GMLSLRLNKAYSVAKLLENLDICIFAESLGGTETLVTFPYTQTHVDMPDAEKDKRGID
                     EYLIRLSLGVENYEDIERDIIQALDKAQIGEIV"
     gene            30024..31184
                     /locus_tag="PF788_000156"
     CDS             30024..31184
                     /locus_tag="PF788_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HDG6302449.1"
                     /translation="MTLSKETEVIFDWRRGVEYHSANPPLYDSSTFHQTSLGGDVKYD
                     YARSGNPNRELLEEKLARLEQGKFAFAFASGIAAISAVLLTFKSGDHVILPDDVYGGT
                     FRLTEQILNRFNIEFTTVDTTKLEQIEGAIQSNTKLIYIETPSNPCFKITDIKAVSKI
                     AEKHELLVAVDNTFMTPLGQSPLLLGADIVIHSATKFLSGHSDLIAGAVITNNEAISD
                     ALYLIQNGTGNMLSAQDSWTLAKHLKTFPIRFKQSVENAQKIVSFLIKQDEISEVYYP
                     GLTTAHLEQAKNGGAVIGFRLADESKAQQFVDALTLPLVSVSLGGVETILSHPATMSH
                     AALPEEVRQERGITFGLFRLSVGLEDPDELIADIKYALKEAFNESIPHTIER"
     gene            31153..32994
                     /locus_tag="PF788_000157"
     CDS             31153..32994
                     /locus_tag="PF788_000157"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HDG6302450.1"
                     /translation="MSQFLTQLKDNVLVADGAIGTILYSEGLDTCPEAYNLSHPDKVE
                     RIHRSYIEAGADVIQTNTYGANFEKLKRFGLEDKVKAIHQAAVRIAKKAANKDTYILG
                     TVGGFRGIKQEDISLQTILYHTEIQIDTLIEEGVDALLFETYYDLEELTNVISRTRKK
                     YDIPIIAQLTASNTNYLVNGQAINEGLKQLVQCGANIVGLNCHHGPHHMQESFTHIEL
                     PEHAFLSCYPNASLLDIENSEFKYSDNAQYFGQVAQNLIREGVRLIGGCCGTTPEHIK
                     FIKESIQTLKPVNDKKVIPIPTKALFNPSQNKVRQSLTSKVQERPTVIIELDTPKHLD
                     TDRFFENIAKLDKANVDAVTLADNSLATVRISNIAAASLIKQYYNIEPLVHITCRDRN
                     LIGLQSHLLGLSLIGVNEILAITGDPSKVGHLPGATNVYDVNSKGLTELALRFNQGIN
                     TDGDALKKRTHFNIAGAFNPNVRKLYGAVKRLEKKIESGMSYFITQPVYSKEKIIEIY
                     HATKHLNKPFFIGIMPIASYKNALFLHNEVPGIKMSDEILQQFEAVKDDKAKTRELSL
                     KLSKDLIDTVHEYFNGLYIITPFQNVEDSLELAAYSKSITAHKEAIL"
     gene            32991..35219
                     /gene="metE"
                     /locus_tag="PF788_000158"
     CDS             32991..35219
                     /gene="metE"
                     /locus_tag="PF788_000158"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDG6302451.1"
                     /translation="MTTIKTSNLGFPRLGRKREWKKAIESYWAKKISKEELDQTLTDL
                     HKENLLLQKYYHLDSIPVGDFSLYDHILDTSLLFNIIPERFQGRTIDDDLLFDIARGN
                     KDHVASALIKWFNTNYHYIVPEWDNVEPKVSRNVLLDRFKYAQSLNVNAHPVIVGPIT
                     FVKLSKGGHQTFEEKVKTLLPLYKEVFESLIDAGAEYIQVDEPILVTDDSESYENITR
                     EAYDYFEKAGVAKKLVIQTYFERAHLKFLSSLPVGGIGLDFVHDNGYNLKQIEAGDFD
                     KSKTLYAGIIDGRNVWASDIEAKKVLIDKLLAHTNELVIQPSSSLLHVPVSLDDETLD
                     TSVGEGLSFATEKLDELDALRRLFNQNDSVKYDKLKARYERFQNQSFKNLDYDFESVR
                     TSRQSPFAQRIEQQQKRLNLPDLPTTTIGSFPQSREVRKYRADWKNKRITDEAYETFL
                     KNEIARWIKIQEDIGLDVLVHGEFERNDMVEFFGEKLQGFLVTKFGWVQSYGSRAVKP
                     PIIYGDVKWTAPLTVDETVYAQSLTDKPVKGMLTGPVTILNWSFERVDLPRKVVQDQI
                     ALAINEEVLALEAAGIKVIQVDEPALREGLPLRSEYHEQYLKDAVLSFKLATSSVRDE
                     TQIHTHMCYSQFGQIIHAIHDLDADVISIETSRSHGDLIKDFEDINYDLGIGLGVYDI
                     HSPRIPTKEEITTAINRSLQQIDRSLFWVNPDCGLKTRKEEEVKDALTVLVNAVKAKR
                     QE"
     gene            35262..36014
                     /locus_tag="PF788_000159"
     CDS             35262..36014
                     /locus_tag="PF788_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDG6302452.1"
                     /translation="MTQYPLWQQLNTLKQATWVDLTHTFDPEIPRFSEFEKGEVSTLF
                     TVKDHGFYVQRWNIVTQYGTHIDAPIHFVENKRYLEDIDLKELVLPLIVLDFSTEVAN
                     NNDFIVTRAHIEAWEKEHGTIEPGTFVALRTDWSKRWPNIEKFENKDANGQQHAPGWG
                     LDALKYLIEERRVEAVGHETFDTDASVDVVKNGDLVGERYILGQDKYQVELLTNLDQL
                     PTRGAIIYAISPKPKDAPGFPVRAFAIKPSND"
     gene            complement(36097..37278)
                     /locus_tag="PF788_000160"
     CDS             complement(36097..37278)
                     /locus_tag="PF788_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HDG6302453.1"
                     /translation="MTRVVLAAAYRTPIGVFGGAFKDVPAYDLGATLIEHIIKETGLN
                     PSEIDEVIIGNVLQAGQGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSI
                     VTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGIT
                     AENLVEQYGISREEQDTFAVNSQQKAVRAQQNGEFDSEIVPVSIPQRKGEPIVVTKDE
                     GVRENVSVEKLSRLRPAFKKDGTVTAGNASGINDGAAMMLVMSEDKAKELNIEPLAVL
                     DGFGSHGVDPSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLP
                     PEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDEVETGLTSLCIGGGQAIAAVVSKY
                     K"
     gene            37817..38950
                     /locus_tag="PF788_000161"
     CDS             37817..38950
                     /locus_tag="PF788_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HDG6302454.1"
                     /translation="MVNALTPKHLAEKRAGFHELFFDLIFVYAIQKIAHVILTTQNGS
                     ISADLFFKYIVMSLFLWLMWSHQTFFTNRFGQVTFKDVSFMMFNMFIMVFLSNSLYPD
                     FEKTFFPFFLCVAIMYLSIGLQYLLHIRTGLDYGDKRTCQAFASVAFVISFLSFLSLV
                     LPQSIHYIPGFLGVFIAATGLIPFQKYLVLSPVNMMHLVERFSLLTIIIFGEVLVGLA
                     SSSFSIDHFSYIYIFQFMILISLFGVYWIITENYINHKLTSIGFRLSYTHLLINIALG
                     VINAAIVFSNNNKLNDLFEINMMYISVLIFYIGLWLITPYFHNELTNAKYISYSLGIL
                     VMSYIVSLLFKGHDHVMIISVSVATFCIMLIYFKNQRLRNKHE"
     gene            complement(39317..39946)
                     /locus_tag="PF788_000162"
     CDS             complement(39317..39946)
                     /locus_tag="PF788_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 transporter permease"
                     /protein_id="HDG6302455.1"
                     /translation="MKGMFLSSFYATRKQTYIYFIVAIIAAGYFAVFNPLMSSAMAGV
                     MLITPITDNIKHEKDSRWMYYVSTLPVKRSDYIKSYFAFYLILFGASLMIGLVVTTIV
                     TQSVMIGIMSGLMSFGIIGAYSIIFPLTFKFGAENSNVIMICASILLLISFVVFFFIY
                     GMVSGASALEFEKISTEGWLVVIAYAVIGIVITSVSYILSIKIFNKQEL"
     gene            complement(39946..40788)
                     /locus_tag="PF788_000163"
     CDS             complement(39946..40788)
                     /locus_tag="PF788_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6302456.1"
                     /translation="MTTLLNVDSVNKQYKDSDFKLQDASLTISTNETVGLIGKNGSGK
                     STLINILVGNRHKDNGSITFFGEEHTVDDVEYKEHIGVVFDDLRVPNKLTIKDIDKVF
                     QSIYMTWNSQKFFDLIKYFELPLQTKIKTFSRGMRMKIALTIALSHDVKLLILDEATA
                     GMDVSGREEVMEILEDFVAQGGGILISSHISEDIEHLADKLVFMKDGRMILTEQKDIL
                     LAQYGIVTTEDKDVEIPKHLIIASRLSKGKYQILVKDYAEIENAEPLKHIDDATKIIM
                     RGEV"
     gene            complement(40813..41526)
                     /locus_tag="PF788_000164"
     CDS             complement(40813..41526)
                     /locus_tag="PF788_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3169 family protein"
                     /protein_id="HDG6302457.1"
                     /translation="MKILRYIGYLLLGGLVGGIIGGILGNFDGFGIENLTFATYNNVV
                     VISIVATIIIILVEAIVLMNQRRALKYKQLVDKEVDIDATDQYELLANRYVLNGSILS
                     ILQTVIAFLVLLIFVVGHAAANAILFFLIPFFASAIFNTQFTLFNRRFDDRIPKIADK
                     NYTEKRLEILDEGERHIELIALFKTYAINLSILILAIVVIGLYSITTGINQSFSLLLI
                     IAIFIYNAFSYLLKRRRFY"
     gene            complement(41523..41726)
                     /locus_tag="PF788_000165"
     CDS             complement(41523..41726)
                     /locus_tag="PF788_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6302458.1"
                     /translation="MRNRLKELRARDGLNQTQLAKQAGVSRQTISLIERNNFMPSVLT
                     AIKIARIFNETVETVFIIEEDEA"
     gene            41967..42356
                     /locus_tag="PF788_000166"
     CDS             41967..42356
                     /locus_tag="PF788_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1398 family protein"
                     /protein_id="HDG6302459.1"
                     /translation="MAFTLSAIQQAHQQFTGVDFPKLFKAFKDMGMTYNIVNIQDGTA
                     TYVHQSEDDIVTSSVKSNHPVAQKSNKTIVQDVLTRHQQGQTDFETFCDEMAEAGIYK
                     WHIDIQAGTCTYIDLQDQAVISELIPQ"
     gene            42456..42680
                     /locus_tag="PF788_000167"
     CDS             42456..42680
                     /locus_tag="PF788_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HDG6302460.1"
                     /translation="MIIMITNTFILGITGPTSLVVISIIALIIFGPKKLPQFGRAIGS
                     TLKEFKSATEDLDKESHDTPSKESKQQREQ"
     gene            42697..43398
                     /gene="tatC"
                     /locus_tag="PF788_000168"
     CDS             42697..43398
                     /gene="tatC"
                     /locus_tag="PF788_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006191819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDG6302461.1"
                     /translation="MVHFSELRHRLVKILLSFVITVIVVYVSSFWWMTPFITYITRAH
                     VSLHAFSFTEMIQIYVMIIFFIAFCFISPVMFYQLWAFIAPGLHNNERQFIYKYSFFS
                     VLLFCAGVAFAFYVGFPMIIQFALKLSLTLNISPVIGFKAYLIELIRWLFTFGLLFQL
                     PILFMGLAKFGLIDTTSLKHYRKYIYFACFVLASIIAPPDLTLNILLTLPLILLFEFS
                     MFIVKFTCRGKPPTH"
     gene            complement(43490..45202)
                     /locus_tag="PF788_000169"
     CDS             complement(43490..45202)
                     /locus_tag="PF788_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000683714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HDG6302462.1"
                     /translation="MKHYLTKFVAMLITAAMVCSFGLLKSQAAEQQSISDVYSVITDA
                     KSALSNNSISNDNKQKAIEQVVSAVKKLSLEDNSESNAVKSDVRKLEDAKANDNQKDT
                     LSQLTKSLIAYEEKLASKDAGSKIKLLQQQVDAKDAAMTKAIKDKNKAELESLNNSLN
                     QIWTSNETVIRNYDANQYGQIEVALLQLRIAIHKSPLDTAKVSHAWTTFKSNIDHVDK
                     KSNTSANDQYHVSQLNDALEKAIKAIDDNQLSDADAALTHFIETWPYVEGQIQTKDGA
                     LYTKIEDKIPYYQSVLDEHNKAHVKDGLVDLNNQIKEVVGHSYSFVDVMIIFLREGLE
                     VLLIVMTLTTMTRNVKDKKGTASVIGGAIAGLVLSIILAITFVETLGNSGILRESMEA
                     GLGIVAVILMFIVGVWMHKRSNAKRWNDMIKNMYANAISNGNLVLLATIGLISVLREG
                     VEVIIFYMGMIGELATKDFIIGIALAIVILIIFALLFRFIVKLIPIFYIFRVLSIFIF
                     IMGFKMLGVSIQKLQLLGAMPRHVIEGFPTINWLGFYPSYEPLIAQGAYIMVVAILIF
                     KFKK"
     gene            complement(45183..46412)
                     /gene="efeB"
                     /locus_tag="PF788_000170"
     CDS             complement(45183..46412)
                     /gene="efeB"
                     /locus_tag="PF788_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDG6302463.1"
                     /translation="MTNYEQVNDSTQFSRRTFLKMLGIGGAGVAIGASGVGSMWSFKS
                     MFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSKDRDAIKAMFKKWTVMAD
                     RMMDGDTVGKPSNNPLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFK
                     DLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGFISA
                     KGKETPRNLMAFKDGTINPRKNNQLKDYVFIDDGWAKHGTYCVVRRIQIHIETWDRTA
                     LEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLAKEANTSILR
                     RAFNYVDGTDDRTGNFETGLLFIAFQKATKQFIDIQNNLGSNDKLNEYITHRGSASFL
                     VLPGVSKGGYLGETLFD"
     gene            complement(46409..47263)
                     /locus_tag="PF788_000171"
     CDS             complement(46409..47263)
                     /locus_tag="PF788_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302464.1"
                     /translation="MKKLTTLLLASTLLIAACGNDDSKKDDSKTSKKDDGVKAELKQA
                     TKAYDKYTDEQLNEFLKGTEKFVKAIENNDMAQAKALYPKVRMYYERSEPVAEAFGDL
                     DPKIDARLADMKEEKKEKEWSGYHKIEKALYEDKKIDDVTKKDAQQLLKDAKELHAKA
                     DTLDIIPKLMLQGSVDLLNEVATSKITGEEEIYSHTDLYDFKANVEGAQKIYDLFKPI
                     LEKKDKKLSDDIQMNFDKVNQLLDKYKDNNGGYESFEKVSKKDRKAFADAVNALGEPL
                     SKMAVITE"
     gene            complement(47531..48076)
                     /locus_tag="PF788_000172"
     CDS             complement(47531..48076)
                     /locus_tag="PF788_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6302465.1"
                     /translation="MFGMKVNEQITLKILEAHDTEALFNLVNRSRNSLREWLPWVDAT
                     EQPSDTRAFIKRGLLQFADGNGFQCGIWYEGTLVGVIGLHEINHMHRKTSLGYYLDKE
                     FEGHGIMTQAVEALIKYCFEELDLNRIEISAAVNNEKSRAIPERLGFTREGMLRDNEL
                     LNGIYSSSYIYSLLKSEYDQK"
     gene            complement(48156..48485)
                     /locus_tag="PF788_000173"
     CDS             complement(48156..48485)
                     /locus_tag="PF788_000173"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302466.1"
                     /translation="MNNKVVIKLSCVIGNLDINQSNRHYNAYWRGPNKEADEKSAYNN
                     VQVGDGPQHREIGSVISTDNASWRGPNIENFEKKFYKQCKLAGPQHREFRKEILQAMQ
                     VGEGQQI"
     gene            48550..49545
                     /locus_tag="PF788_000174"
     CDS             48550..49545
                     /locus_tag="PF788_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HDG6302467.1"
                     /translation="MASLKNKHFMIGLSLTFIVALFSFLAAKLPILDKVGALTIAILI
                     AILYRHFRGYPEQYSSGITFSSKYLLRFAIILYGLKLNIFDIIGQGSKLLAIDVGVVI
                     FSIVMMLFVNKLLHGDKNIALLLGVGTGVCGAAAIAAVAPIFKSREKDTAISIGIIAL
                     IGTIFSLIYTAIYAIFSMTTNVYGAWSGVSLHEIAHVVLAGGFGGSDALKIALLGKLG
                     RVFLLIPLTIVLILIMRFRSSESSSKGRISIPYFLIGFVIMALVNTYVTIPSALLNIL
                     NTVSTICLLMAMVALGLNVAFKDLKNRALKPLMTIIITSICLSSLAFIVVHWLYS"
     gene            complement(49605..50171)
                     /locus_tag="PF788_000175"
     CDS             complement(49605..50171)
                     /locus_tag="PF788_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDG6302468.1"
                     /translation="MNIVLLSGSTVGSKTRIAMDDLKNELEVINEGHQIELMDLRELE
                     LEFSVGKNYLDTTGDVYKLTTSLMQADVIFIGFPIFQASIPGALKNVFDLLPVNAFRD
                     KVIGLVATAGSSKHYLIPEMHLKPILSYMKAHTMQTYVFIEEKDFSNQQIVNDDVVFR
                     LKALAQSTMRTAKVQQQVFEEENNQYDF"
     gene            complement(50185..51246)
                     /locus_tag="PF788_000176"
     CDS             complement(50185..51246)
                     /locus_tag="PF788_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDG6302469.1"
                     /translation="MAKLEMNKNTPLEFGLYSLGDHLLNPLKGEKVSYEQRINEIIEA
                     SKLADEAGIDVFAVGESHQEHFTTQAHTVVLGAIAQATKHIKVSSSSTIISATDPVRV
                     FEDFATLDLISHGRAEIVAGRASRTGIFDLFGYDLKDYDELFEEKLGLLLELNKTERI
                     TWSGKYRPELRNMKIFPRPIDNILPIWRAVGGPPASAIKAGKQGVPMMITTLGGPAMN
                     FKGSIDAYRQAATEAGFDASPKSLPVSTASLFYTAETTQDAMREFYPHLNTGMSFIRG
                     VGYPKQQFANSSDYREALMVGSPQQIIEKILYQHELYGHQRFMAQLDFGGVPFENVMK
                     NIELIGNDIIPAIKKHLSK"
     gene            complement(51260..52186)
                     /locus_tag="PF788_000177"
     CDS             complement(51260..52186)
                     /locus_tag="PF788_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDG6302470.1"
                     /translation="MNIVGHHHISMYTKDAKRNKDFYTNVLGLRLVEKSVNQDNPSMY
                     HLFYGDEVGTAGTILSFFEIPNAGHKQPGTETIYRFSLLVPNQAALHYFEKRLENNGI
                     KSERLYYLGQEGVVFKDEDDLEIILLVNDSFEVPHQWQHNAYSEIPQAYQILGIGPVE
                     LRVRNAARTVEFLENVLGYRKRDNKSFDVLTLAPQGLYSDFVVIEQQGQRERPGRGYI
                     HHIAVNTPQMSDLDAIYKKLQQQPQSNSGIIDRYFFKSLYYRHNSIMYEFATEAPGFT
                     IDTPVEQLGSQLNLPDFLEAEREQIESKLHEI"
     gene            52494..53852
                     /gene="glpT"
                     /locus_tag="PF788_000178"
     CDS             52494..53852
                     /gene="glpT"
                     /locus_tag="PF788_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDG6302471.1"
                     /translation="MNFLKPAKHIKPLPENQIDDTYKRLRLQVFLGIFIGYAGYYLLR
                     KNFSLAMPALQEQGFTKAELGFALSAVSIAYGFSKFFMGTVSDRSNARIFLVLGLALT
                     AIVNLLMGFVPFFTSGIGIMFVLLFLNGWFQGMGWPPSGRVLVHWFSVSERGSKTALW
                     NVAHNVGGGIMAPIAAWGITTTAFINFGYLKGFEGVFIYPALLALIIAAISYVLIRDT
                     PQSQGLPPIEIYKNDFATSDKKTLETELTTKEILFKYVLNNKWVWAIAFANIFVYFVR
                     YGVLDWAPVYLSEEKHFDLKASGWAYFLYEWAGIPGTLLCGYISDKLFKGRRGPAGFF
                     FMLGVTVFVLIYWLNPPGNAWLDNVSLIAIGFLIYGPVMLIGLQALDYVPKKAAGTAA
                     GLTGLFGYLFGAVMANIVLGAVVDKFGWDVGFILLTAISVFAMLSFILTWNKVGQETV
                     HH"
     gene            complement(53935..54375)
                     /locus_tag="PF788_000179"
     CDS             complement(53935..54375)
                     /locus_tag="PF788_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MepB family protein"
                     /protein_id="HDG6302472.1"
                     /translation="MCKSKILLKNIFSEESEVKDLTEEKYNQDYEALTFSFKEETYQS
                     RLAKKTPTKSGYFVTCWTKDEDNYNRPYKIEEFADYLIVAVIDDELNGYFLFPRELLV
                     EKGILASSKYQGKMAFRVYPKWCNQLNKTAGQTQKWQCKYFFEY"
     gene            complement(54479..55834)
                     /gene="mepA"
                     /locus_tag="PF788_000180"
     CDS             complement(54479..55834)
                     /gene="mepA"
                     /locus_tag="PF788_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498905.1"
                     /note="MepA (multidrug export protein A), as described
                     originally in Staphylococcus aureus, is a MATE transporter
                     shown to be over-expressed after culturing in the presence
                     of tigecycline, owing to mutation of its repressor MepR,
                     and then to be one of several factors contributing to
                     elevated tigecycline resistance; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter MepA"
                     /protein_id="HDG6302473.1"
                     /translation="MKDEQLYYFEKSPVFKAMMHFSLPMMIGTLLSVIYGILNIYFIG
                     FLEDSHMISAISLTLPVFAILMGLGNLFGVGAGTYISRLLGAKDYSKSKFVSSFSIYG
                     GIALGLIVILVTLPFSDQIAAILGARGETLALTSNYLKVMFLSAPFVILFFILEQFAR
                     AIGAPMVSMIGMLASVGLNIILDPILIFGFDLNVVGAALGTAISNVAAALFFIIYFMK
                     NSDVVSVNIKLAKPNKEMLSEIFKIGIPAFLMSILMGFTGLVLNLFLAHYGNFAIASY
                     GISFRLVQFPELIIMGLCEGVVPLIAYNFMANKGRMKDVIKAVIMSIGVIFVVCMSAV
                     FTIGHHMVGLFTTDQAIVEMATFILKVTMASLLLNGIGFLFTGMLQATGQGRGATIMA
                     ILQGAIIIPVLFIMNALFGLTGVIWSLLIAESLCALAAMLIVYLLRDRLTVDTSELIE
                     G"
     gene            complement(55941..56360)
                     /gene="mepR"
                     /locus_tag="PF788_000181"
     CDS             complement(55941..56360)
                     /gene="mepR"
                     /locus_tag="PF788_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor MepR"
                     /protein_id="HDG6302474.1"
                     /translation="MEFTYSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQ
                     QDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE
                     AFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ"
     gene            56572..58527
                     /locus_tag="PF788_000182"
     CDS             56572..58527
                     /locus_tag="PF788_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HDG6302475.1"
                     /translation="MLSYRQIEILYLLIHEQTFIPINTIANQLGVSPRTIQYDIAYIE
                     QYAETYHYQVSRNKAAGIKVTTAHATLLNELEHNLTNQIHFSKDERLTHIALKLFETT
                     DPVSTKQLAQDVNVSRRTIADDIKMIQAQLDQYHLKLNYVHNKGFNIIGEEDHYRKAY
                     AHFIHQYMKQATPFIEADIFNSESIALVRRAIIKTLNSENYHLVQSAIDGLIYHILIA
                     IQRLNENFSFDIPINEIDKWRHTNQYAIASKMIENLERSCNVTFPESEIIFITLHLLG
                     SKMTEHTASSITFEYHDLSQNIHELITCVSQELGIDMSKDNKLHTSLITHIKPAIHRI
                     KYDMLQPNPLRQEVMRRYPQIIEAVSKHISPIEQDAAIRFNEDELTYITIHFASSIER
                     VATHKQSMIKVVLLCGSGIGTSQLLKSKLNHLYPEFHIWDAYSIYQLEESRLLQDNID
                     YVISTVPCEISAVPVIHVDPFINQQSRQKLNQIINDSREQRVMKMATDGKSLADLLPE
                     HRIIINKQPLSIESAIAVAVQPLINDGIVYSNYTAAILKQFEQFGSYMVISPHIALIH
                     AGTDYVQNGVGFALTYFTEGIIFGSKANDPVHLVITLATDHPNAHLKALGQLSECLSN
                     DLYRQDFLDGNIFKIKQHIALTMTKEA"
     gene            58532..58975
                     /locus_tag="PF788_000183"
     CDS             58532..58975
                     /locus_tag="PF788_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDG6302476.1"
                     /translation="MSLDILSTTRIIVKEQVNDWTEAITIASQPLLQEQIIEQGYVQA
                     MIDSVNELGPYIVIAPEIAIAHARPNNDVHQVGLSLLKLNQHVAFCDEDHYASLIFVL
                     SAIDNHSHLSVLQNLATVLGDNQTVQQLLTATNAQDIKNILKEHD"
     gene            58977..59261
                     /locus_tag="PF788_000184"
     CDS             58977..59261
                     /locus_tag="PF788_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDG6302477.1"
                     /translation="MKILVVCGHGLGSSFMVEMNAQEALRQLNAPSDIEVEHSDIMTA
                     SPEMADLFICGRDLAENAERLGDVLVLDNILDKAELQQKLSEKLQQLNMI"
     gene            59276..60622
                     /locus_tag="PF788_000185"
     CDS             59276..60622
                     /locus_tag="PF788_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HDG6302478.1"
                     /translation="MQAILNFIVDILSQPAILVALIAFIGLIVQKKPAATITSGTIKT
                     ILGFLILSAGADVVVRSLEPFGKIFQHAFGVQGIVPNNEAIVSLALKDFGTTAALIMV
                     CGMIVNILIARFTNLKYIFLTGHHTFYMAAFLAIILTVSHIKGWLTIVIGALVLGLIM
                     AVLPALLQPTMRKITGNDQVALGHFGSISYFAAGAVGQLFKGKSKSTEEIKFPKGLSF
                     LRESTISISITMALLYFIACLFAGVSYVHESISDGQNFIVFSLIQGVTFAAGVFIILT
                     GVRLILAEIVPAFKGISEKLVPNSKPALDCPIVFPYAQNAVLIGFFVSFITGVIGMFI
                     LFLFGGVVILPGVVAHFFLGATAAVFGNARGGIKGAIAGAALNGILITFLPLLFLPFL
                     GELGGAATTFSDTDFLAVGIVFGNAVKYMGLFGAILFIIIVGATTILLKGRQKEQQ"
     gene            complement(60715..61740)
                     /locus_tag="PF788_000186"
     CDS             complement(60715..61740)
                     /locus_tag="PF788_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde reductase"
                     /protein_id="HDG6302479.1"
                     /translation="MNNKVLATGGTGFVGMRIISRLLEQGYDVQTTIRDLSKADKVIK
                     TMQDNGISTERLMFVEADLSQDEHWDEAMKDCKYVLSVASPVFFGKTDDAEVMAKPAI
                     EGIQRILRAAEHAGVKRVVMTANFGAVGFSNKDKNSITNESHWTNEDEPGLSVYEKSK
                     LLAEKAAWDFVENENTTVEFATINPVAIFGPSLDAHVSGSFHLLENLLNGSMKRVPQI
                     PLNVVDVRDVAELHILAMTNEQANGKRFIATADGQINLLEIAKLIKEKRPEIAQKVST
                     KKLPDFILSLGAKFNHQAKEGKLLLDMNRNVSNERAKTLLGWEPIATQEEAILAAVDS
                     MAKYHLI"
     gene            complement(62055..63077)
                     /locus_tag="PF788_000187"
     CDS             complement(62055..63077)
                     /locus_tag="PF788_000187"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HDG6302480.1"
                     /translation="MYLIEPIRNGEYITDGAIALAMQVYVNQHIFLDEDILFPYYCDP
                     KVEIGRFQNTAIEVNQDYIDKHSIQVVRRDTGGGAVYVDKGAVNMCCILEQDTSIYGD
                     FQRFYQPAIKALHTLGATDVVQSGRNDLTLNGKKVSGAAMTLMNNRIYGGYSLLLDVN
                     YEAMDKVLKPNRKKIASKGIKSVRARVGHLREALDEKYRDITIEEFKNLMVTQILGID
                     DIKEAKRYELTDADWEAIDELADKKYKNWDWNYGKSPKYEYNRSERLSSGTVDITISV
                     EQNRIADCRIYGDFFGQGDIKDVEEALQGTKMTREDLTHQLKQLDIVYYFSNVTVEAL
                     VDMILS"
     gene            complement(63055..63999)
                     /locus_tag="PF788_000188"
     CDS             complement(63055..63999)
                     /locus_tag="PF788_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDG6302481.1"
                     /translation="MQSSKWNAMSLLMDDKTKQAEVLRTAIDEADAIVIGIGAGMSAS
                     DGFTYVGERFTENFPDFIEKYRFFDMLQASLHPYGSWQEYWAFESRFITLNYLDQPVG
                     QSYLALKSLVEGKQYHIITTNADNAFDVADYDMTHVFHIQGEYILQQCSQHCHAQTYR
                     NDDLIRKMVVAQQDMLIPWEMIPRCPKCDAPMEVNKRKAEVGMVEDAEFHAQLHRYNA
                     FLEQHQDDKVLYLEIGIGYTTPQFVKHPFQRMTRKNENALYMTMNKKAYRIPNSIQER
                     TIHLTEDISTLITAALRNDSTTKNNNIGETEDVLNRTD"
     gene            complement(63989..64789)
                     /locus_tag="PF788_000189"
     CDS             complement(63989..64789)
                     /locus_tag="PF788_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-ADP-ribose hydrolase"
                     /protein_id="HDG6302482.1"
                     /translation="METLKSNKARLEYLINDMHRERNDNDVLVMPSSFEDLWELYRGL
                     ANVRPALPVSDEYLAVQDAMLSDLNRQHVTDLKDLKPIKGDNIFVWQGDITTLKIDAI
                     VNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYN
                     LSAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAF
                     PQDEAAEIAVRTVESYLKETNSTLKVVFNVFTDKDLQLYKEAFNRDAE"
     gene            complement(64790..65122)
                     /locus_tag="PF788_000190"
     CDS             complement(64790..65122)
                     /locus_tag="PF788_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498895.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein H"
                     /protein_id="HDG6302483.1"
                     /translation="MKKLANYLWVEKVGDLYVFSMTPELQDDIGTVGYVEFVSPDEVK
                     VDDEIVSIEASKTVIDVQTPLSGTIIERNTKAEEEPTILNSEKPEENWLFKLDDVDKE
                     AFLALPEA"
     gene            complement(65156..66157)
                     /locus_tag="PF788_000191"
     CDS             complement(65156..66157)
                     /locus_tag="PF788_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDG6302484.1"
                     /translation="MVKLSVLDYALIDEGKDAQKALQDSVTLAKLADRLGFKRIWFTE
                     HHNVPAFACSSPELLMMHTLAQTNHIRVGSGGVMLPHYRPYKIAEHFRMMAALYPNRI
                     DLGIGNNPGTTMVKQALDGINPTYDSYDESISLLRDYLTIKDKPSAHTLGVQPHIDHF
                     PEMWLLSSSATSAKIAAELGIGLSVGTFLLPDINAIHAAKDNIDIYKKHFQASTIKMD
                     AKVMASVFVIVADNEAEVAALQHALDVWLLGKLQFAEFEDFPSVDTAQKYKLNDRDKE
                     MIQAHQARIIAGTQEKVKAQLDDFIATFEVDEVLVAPLIPGIEQRCKTLKLLAEIYL"
     gene            complement(66271..66363)
                     /locus_tag="PF788_000192"
     CDS             complement(66271..66363)
                     /locus_tag="PF788_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302485.1"
                     /translation="MESIFKIKLMNGICRSENMNMKKKNKGEKI"
     gene            66459..67658
                     /locus_tag="PF788_000193"
     CDS             66459..67658
                     /locus_tag="PF788_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDG6302486.1"
                     /translation="MYRYKPLLQSIHLPNGIKISNRFVLSPMTVNTSTKEGYITKEDL
                     AYAARRSNSAGMQVTGAAYIEPYGQLFEYGFNIDHDACIPGLTNMASTMKQHGSLAII
                     QLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHDVIAMSHEKINSIIQQYRDATLRAI
                     KAGFDGVEISIAQRLLIQTFFSTFSNKRTDHYGADSLKNRARLCLEVMRAVQEVIDKE
                     APDNFILGFRATPEETRGSDLGYTIDEFNQLINWVMDVSNIQYLAIASWGRHIYQNTS
                     RTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQHADMVGMSSPFVTEPD
                     FVHKLAEQRPHDINLEFSMADLEDLAIPHAAFKDIVKMMDYGEGLKKHTRDALRQLEQ
                     NYHDSSS"
     gene            67731..68558
                     /locus_tag="PF788_000194"
     CDS             67731..68558
                     /locus_tag="PF788_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6302487.1"
                     /translation="MTEIKDKVITKDAFALPYTIIKAKNQPTKGAIVYIHGGGLMFGK
                     ANDLSPQYIDILTEHYDLIQLSYRLLPEVSLDCIIEDVYASFDAIQSQYSNCPIFTFG
                     RSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSVNETMIAQLTS
                     PTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTNSKYNIAPDELKTLPPVFIAHCN
                     GDYDVPVEESEHIMNHVPHSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITMM"
     gene            complement(68800..70872)
                     /gene="lip2"
                     /locus_tag="PF788_000195"
     CDS             complement(68800..70872)
                     /gene="lip2"
                     /locus_tag="PF788_000195"
                     /EC_number="3.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK domain-containing triacylglycerol lipase
                     Lip2/Geh"
                     /protein_id="HDG6302488.1"
                     /translation="MLRGQEERKYSIRKYSIGVVSVLAATMFVVSSHEAQASEKTSTN
                     AAAQKETLNQPGEQGNAITSHQMQSGKQLDDMHKENGKSGTVTEGKDTLQSSKHQSTQ
                     NSKTIRMQNDNQVKQDSERQGSKQSHQNNATNNTERQNDQVQNTHHAERNGSQSTTSQ
                     SNDVDKSQPSIPAQKVIPNHDKAAPTSTTPPSNDKTAPKSTKAQDATTDKHPNQQDTH
                     QPAHQIIDAKQDDTVRQSEQKPQVGDLSKHIDGQNSPEKPTDKNTDNKQLIKDALQAP
                     KTRSTTNAAADAKKVRPLKANQVQPLNKYPVVFVHGFLGLVGDNAPALYPNYWGGNKF
                     KVIEELRKQGYNVHQASVSAFGSNYDRAVELYYYIKGGRVDYGAAHAAKYGHERYGKT
                     YKGIMPNWEPGKKVHLVGHSMGGQTIRLMEEFLRNGNKEEIAYHKAHGGEISPLFTGG
                     HNNMVASITTLATPHNGSQAADKFGNTEAVRKIMFALNRFMGNKYSNIDLGLTQWGFK
                     QLPNESYIDYIKRVSKSKIWTSDDNAAYDLTLDGSAKLNNMTSMNPNITYTTYTGVSS
                     HTGPLGYENPDLGTFFLMATTSRIIGHDAREEWRKNDGVVPVISSLHPSNQPFVNVTN
                     DEPATRRGIWQVKPIIQGWDHVDFIGVDFLDFKRKGAELANFYTGIINDLLRVEATES
                     KGTQLKAS"
     gene            71290..72603
                     /locus_tag="PF788_000196"
     CDS             71290..72603
                     /locus_tag="PF788_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiH family protein"
                     /protein_id="HDG6302489.1"
                     /translation="MNQYHSNAQQPSAWRFFVYSLVGILCFFIPFTINGNNTIFVDHV
                     HLAIRSIIGPLMPYVALIMILIGTALPIVRRTFMTSITNLVITLFKVAGAMIGIMYVF
                     KIGPSILFKANYGPFLFEKLMMPLSILIPVGAIALSLLVGYGLLEFVGVYMEPIMRPI
                     FKTPGKSAVDAVASFVGSYSLGLLITNRVYKQGMYNKREATIIATGFSTVSATFMIIV
                     AKTLGLMPHWNLYFWITLVITFVVTAITAWLPPISNESTEYYNGQEGEQEVAIEGSRL
                     KTAYAEAMKQNALTPSLVKNVWDNLKDGLEMTVGILPSILSIGFLGLIVANYTPFIDW
                     LGYIFYPFIYIFPIADQALLAKASAISIVEMFLPSLLVTKAAMSTKFVVGVVSVSAII
                     FFSALVPCILATEIKIPVWKLIIIWFLRVALSLLITIPVALLIFG"
     gene            complement(72730..73398)
                     /locus_tag="PF788_000197"
     CDS             complement(72730..73398)
                     /locus_tag="PF788_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDG6302490.1"
                     /translation="MLPHGLIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTK
                     EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK
                     ETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQ
                     NDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQ
                     IMED"
     gene            73537..74337
                     /locus_tag="PF788_000198"
     CDS             73537..74337
                     /locus_tag="PF788_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDG6302491.1"
                     /translation="MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAI
                     GTSPATMTRFSHKLDYENFQDLKFNIQQEMTETVIENSPIIQRIHKYHQQIIQQTGEF
                     IDNDIIQTFIDKLQSSRHILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISA
                     SLLSHSDMFIAMSNSGNTSELISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTD
                     QSRNTDHQFINTQIATLFLIDIVSYHLLENTNLSQTYQHTKSIILDNK"
     gene            complement(74615..75475)
                     /locus_tag="PF788_000199"
     CDS             complement(74615..75475)
                     /locus_tag="PF788_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDG6302492.1"
                     /translation="MYYIAIDIGGTQIKSAVIDKQLNMFDYQQISTPDNKSELITDKV
                     YEIVTGYMKQYQLIQPVIGISSAGVVDEQKGEIVYAGPTIPNYKGTNFKRLLKSLSPY
                     VKVKNDVNAALLGELKLHQYQAERIFCMTLGTGIGGAYKNNQGHIDNGELHKANEVGY
                     LLYRPTENTTFEQRAATSALKKRMIAGGFTRSTHVPVLFEAAEEGDDIAKQILNEWAE
                     DVAEGIAQIQVMYDPGLILIGGGISEQGDNLIKYIEPKVAHYLPKDYVYAPIQTTKSK
                     NDAALYGCLQ"
     gene            75633..76514
                     /locus_tag="PF788_000200"
     CDS             75633..76514
                     /locus_tag="PF788_000200"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDG6302493.1"
                     /translation="MNKDLKGLYAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLY
                     VNGSSGENFLLNTEQKKQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYD
                     ALSAVTPFYYPFTFEEIRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEK
                     IVGVKYTAPNFFLLERIRKAFPDKLILSGFDEMLVQATISGVDGAIGSTYNVNGRRAR
                     KIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILRHRGIDAGLPKRPFKPF
                     NEAHRQTLDQLIAKYDL"
     gene            76554..78086
                     /locus_tag="PF788_000201"
     CDS             76554..78086
                     /locus_tag="PF788_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HDG6302494.1"
                     /translation="MKEVGFGTLNWVAVIIYLLAMLFIGVYFTKRASQSTNSFFTASG
                     RLPSWVVGFSIYATTLSAITFMSTPEKAFLTDWSYIAGNIAIVAIIPLLIYFYVPFFK
                     KLKVTSAYEYLEARFGPSIRVIGSLLFVVYHLGRVAIVIYLPTLAITSVSDMNPYIVA
                     SLVGLLCILYTFLGGFEGVVWSDFIQGVILLGGALVIIILGVVNIKGGFGTVFADAIE
                     HKKLISADNWKLNTAAAAIPIIFLGNIFNNLYQYTASQDVVQRYQASDSLKETNKSLW
                     TNGILALISAPLFYGMGTMLYSFYTHEAVLPKGFNTSSVVPYFILTEMPPFVAGLLIA
                     AIFAAAQSTISSSLNSISACISIDIKQRFFGKGSERHEVNFARFIIIIAGIFGFGMSL
                     YLIASNSNDLWDLFLFVTGLFGVPLAGVFAVGIFTKRTNTFGVICGLILGIIFAYVYN
                     GVGKGNSPFYVSTISFTVAFVFAYILSFIVPSKHKKDITGLTIFEKDKPSTYISKTAT
                     KK"
     gene            complement(78191..>79103)
                     /locus_tag="PF788_000202"
     CDS             complement(78191..>79103)
                     /locus_tag="PF788_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDG6302495.1"
                     /translation="IGIFNYIKVLPFIIKYVGIAINKITRMGRLESYFAISTAMFGQP
                     EVYLTIKDIIPRLSRAKLYTIATSGMSAVSMAMLGSYMQMIEPKFVVTAVMLNIFSAL
                     IIASVINPYKSDDTDVEIDNLTKSTETKTLNGKTGKPKKVAFFQMIGDSAMDGFKIAV
                     VVAVMLLAFISLMEAINIMFGSVGLNFKQLIGYVFAPIAFLMGIPWSEAVPAGSLMAT
                     KLITNEFVAMLDFKNVLGDVSARTQGIISVYLVSFANFGTVGIIVGSIKGISDKQGEK
                     VASFAMRLLLGSTLASIISGSIIGLVL"
BASE COUNT        25436 a        14931 c        12101 g        26635 t
ORIGIN      
        1 ttgcgaaatt tgctaaatac aaaattgatg agttccacct aataaaaatt gttggtttta
       61 tagtaacatc tattttcgta ccattcatgt taatttcagt gctaataatg ctgatataaa
      121 gaagaataaa ttgattagga gaacactatt taatgtctaa aaatatcaat caagcaaata
      181 gtaaattaaa tacgtcaaac aaaaaactaa aacaagctta ttcaaaatcc gacagtaaaa
      241 acatgaaagt tatatacatg cctcattggc tagagtttta ttcaattgct atacatagcg
      301 atgttacaag caataaaaaa agatattata aatcatatag tagaggaaca gtggtatatg
      361 taaaactagg gagtaatatt ggaagtgagt tttctggtaa tcatttttgt gtaatattag
      421 ataacaaaga caataaagga aaagaaacag ttacaatagt tccactttct tccaaaggta
      481 ataaaaatta tttgaagtta aacgaatcgg tgctaaatct aacagcaaca gatttaaaaa
      541 aacagattat cgatatcagt agtaaagtac aagcattagc ccaaaaatat agagaaattg
      601 acattaaact tagcacagaa gataaaaagc ttttgtctaa cttaaatcaa aaagctaatg
      661 aactgtatag agtgataggt gtttattcca agcacaaagg gaaagataca tacgttaata
      721 tatcagcaat tacaacaata agcaaaagac gtataagcaa aataaatgat tctgatccta
      781 ctggaacgat aataatttca gaagatgaca tgaatgaaat cgaaaagcaa ttaaagataa
      841 agttcttttc taattgaatt gtaatattac atctgatata attgatttac aaattcccgg
      901 taaccattcc ggcttcattc tcttgaagaa tgacatattc tcagcgtttt agctgaaggt
      961 cagatgatac gtcatctggc ctcttttttt atataaatgc cctttaagtg aaatatacaa
     1021 caatctgcaa tcaatattag acatcacaaa acacacaata aattacacaa tgtgttataa
     1081 gccacatgtc actattatcg cagctagctg cgtcactcaa aacgaatacg gaacgcgttg
     1141 gttatttcaa tcataatatt actctgcaaa tacacagccc tgtaaccgag taaatggata
     1201 gagatttgaa caaatgaaaa caatcaacta atggaaagga taaaatatta tgcacaacaa
     1261 taatgaattc aacaaaaaac tgaaagattt tataggtagc gataaacgga tggctttagt
     1321 aaagggttat gttaacgagt ataaattaac aactgtttta agagctttaa ataattccga
     1381 ttacacaaaa gggacgatac acactcgttc aataggcaac ctaaaacaaa tagtagataa
     1441 tcgaattatt cctaaaaata taactcaaaa cacaatcttc aaattgagta atttaacctt
     1501 agaggttaac ctctatgaaa gaaacacaat ttatcacgga gactttgcta tttactatcc
     1561 tgtagaatct gctctaataa tagaaacaga tactcctagg ctaattaatc atataaataa
     1621 caacccagtc caaaaaatat ttataataac aacaaatgac tggagcttta atacacttga
     1681 attagaaaaa atagtagacg aaactataat ttatgattta aaacaagaag atcctaaaca
     1741 atatgaaatt ttatataaaa ataaacacgg aaaattgcct tattgatgaa ttaaaacgca
     1801 aacttagaac accttacccc ttttccgtcc ttattgtaat tttccaacta ctcaaattaa
     1861 aaaccacccg tgcaaacagg tggttttatt atatataatt attcccactc aattgtgctt
     1921 ggtggttttg atgtaatgtc atagactacg cggttgacgt gatctacttc gtttacgata
     1981 cgactagaaa tcttttgtaa gacttcccaa tcgatgcgtg cgaagtcact tgtcataccg
     2041 tcgatagatg ttactgcacg aatacctact gtgtgatcat acgtacggta gtctcccata
     2101 acacctactg attgaatgtt tggtaacact gtgaagtatt gccaaatttc tctttcaaga
     2161 ccttcttctc taatcacttg gcgtaaaatc gcgtctgatt ctctaacgat ttctagttta
     2221 tcttcagtaa tttctccaag tacacgaata ccaagaccag gtcctgggaa tggttgtctc
     2281 catactaaat gttctggaat acctaactca atacctaatt tacgtacttc atctttaaac
     2341 aatgtattga ttggttcgat taattcgaat tccatgtctt ctggtaatcc accaacattg
     2401 tggtgtgatt tgattgtttg tgctgtttta gtacctgatt cgatgacgtc tgtatatagt
     2461 gttccttgcg caaggaagtc tacacctttc agttttgatg cttcatcatc aaatacgtat
     2521 acaaattcat taccaatgat tttacgtttt tgttcaggat ctgaaacacc ttttaattta
     2581 ttcataaagc gatctttcgc attaacacga ataatattca tgttgaaacc ttcaccgaat
     2641 tgctccataa ccatgtcgcc ttcaccttta cgaagtaagc catggtctac aaagatacat
     2701 gttagttgat cacctattgc tttatgcaat agtacagcta caacagatga atctacgccg
     2761 ccactcatcg cacataatac acgacggtct cctacgcgtt gacgaatctt ttcaatttcg
     2821 atttcgataa agttttccat tgtccattga cctctacaat cacaaacacg acggacaaaa
     2881 ttatttaata aatcattacc atattctgta tgacgtactt ctggatggaa ttgaacacca
     2941 taaatgcgac gtttcttatc ttcgattgct gcatagtctg tgcttgggct atcagcgata
     3001 acttcaaagc cttctggaat ttcaataact ttatcagaat gactcatcca aacagtttgt
     3061 tctgctggta agccagcgaa taactcatct gacttcgcat taatgattgc tttaccgtat
     3121 tcacgttcat tggcacgttc aactttacca cctaataatt tagtagttaa ttgcatgccg
     3181 taacaaatac caagtactgg aattcctaaa ttatatattt ccggatcaat tgtaaatgaa
     3241 ccttcttcat aaactgaatt tggaccacct gataagataa taccttttgg attcattttc
     3301 ttaatttctt caattgaaat ttcatgatcg tgtaattcac tataaacgcc catttcacga
     3361 attcggcgtg taattaattg gttgtattgg ctaccaaagt ctaagacaag gattaactct
     3421 tgttcttttg ccatttccat atttgtcgtt ctcctttatc ttaattagaa tgagtagttc
     3481 ggtgattctt tcgtaatttg aatattatgt ggatggcttt ctgctaaacc agcaggaccc
     3541 atacgtgtaa attgtgcttc ttcgcgtaat tctcttaaat cgtgtgaacc agtataaccc
     3601 ataccagcac gcacaccgcc cattaattgg taaattgtat cttgtaacgc acctttataa
     3661 gccgtacgtc cttcgatacc ttcaggaaca aatttcttag gcgctttgtc ctcttggaag
     3721 taacggtcgt ttgaaccttt ttccatcgca cctaaagagc ccataccacg gtatacttta
     3781 tattgtctac cttggaaaat ttctgttgcg cctgggcttt cttcagtacc tgctaataag
     3841 ctacctaaca taaccgcatg tccaccagca gctaatgctt taatgatatc tcctgagaat
     3901 ttaataccac catcagcaat gatagcttta ccatgtttgc gtgcttcagt tgcacaatca
     3961 taaattgctg taatttgtgg tacaccaaca cctgctacaa cacgcgtcgt acaaattgaa
     4021 cctgggccaa taccaacttt aacaatatct gcacccgctt caaataaatc ttttgttgct
     4081 tctgcagttg ctacgttacc tgctactaat gtgatttctg ggtaagtctt cttaatatgt
     4141 ttcacttgat cgataacacc tttagagtga ccatgtgctg tatcgataac taagacatcc
     4201 acacctgctt cgactaattt ttgagcacga atatcagtat cttttgaaat accaattgct
     4261 gcggctacaa gtagacgacc atgttcatct tttgctgcat tagggaattc gataactttt
     4321 tcaatatctt taatagtaat aagaccttct agacgtccgt ctttaactaa tggtaacttt
     4381 tcaatcttat gtttttggag aattttttct gcttcttcaa gtgttgtatt cactggagct
     4441 gtaattaaat tttcttgcgt cattacatct acaattttaa tcgagaagtc ttcaataaaa
     4501 cgtaagtcac ggtttgttaa aatacctact aagttgcgat cttctttatt atcaacaatt
     4561 ggtacacctg aaatacggta tttacccatt aatgcttctg cttcataaac gctttcttct
     4621 ggcgttaaga aaaatgggtt tgaaatgaca ccattttctg agcgttttac tttttgaact
     4681 tcgtccgctt gttcttcaac gcccatattt ttatgaataa cacctaaacc accttgacga
     4741 gccatagcaa tcgccatttt agattcagtt acagtatcca taccagcaga aataactgga
     4801 atatttaatt taactttgtc tgataattgt acgcttaaat caacgtcttt cggtaaaata
     4861 tcagattgtg ctggaattaa taacacatca tcaaacgtta atgattcttt tgcaaattta
     4921 ctttcccaca ttaaaaacag cctccatttt tcaaattaat tagttatatt atttcacatt
     4981 ttcttccgtt tgtttatact ttattccatt aaaaaagaaa ttaagaataa ttgcagagat
     5041 tgcgcctaaa acaattccgt tttgagtcaa ccatgcaaat tgttcaccta aacctttaaa
     5101 tgcttgtggt acagcgctta taccagtacc taatcctact gatacagcga taattaataa
     5161 attgttttga tttttaaaat cgatatgtcc taatatacta acaccatatg ccattaccat
     5221 gccaaacata gctatcatcg caccgcctaa cacaggtagc ggtatgatat ttgctaatgc
     5281 gccaagctta ggtatacaac cacatataag taataacacg accatgccgt atataacatt
     5341 gtttttctta gcgccggata aagaaacaag tcctacattt tgcgaatagg ctgtatacgg
     5401 aaatgaattg aatatagaac ctaacactat cgctagacct tccgcagtat aacctttacg
     5461 aaaatctttt ctttctaact tcttaccggt aatttcactt aacgcatgat agacacctgt
     5521 cgactcaatt aaactaacga tagctacaat aaagaacact aacgtcgatg tcacatcaaa
     5581 gctaaatcca gagaatctaa acggcactgg gatgcctaac caaccggcat gattgacttg
     5641 attaatatcg accatcccaa gtaagccagc acctatcgtt cctaaaacga gtccaattaa
     5701 tatggcaata ctcttaataa atccagttgt gaatctttgt aaaagaagaa taatgattaa
     5761 tgtcattaaa cctaacaaaa tgttcttaac atctccatag tcctttgcac cttgacctcc
     5821 agctaagtaa ttcattgcta ctggcattaa attgatacca atgatagtaa caacactacc
     5881 cgttactact ggtgggaaga attttacaag atgtgaaaag aaaggcgcga tgataataac
     5941 taatatccct gataaaaata gcgaaccata aagtacatct attcctttcg tttgaccaat
     6001 taaaatcatg ggcgcaacag ccgtgaatgt acatccaaga acgattggta atcctgttcc
     6061 tgttacttta ttggcttgta aaaatgtggc aaccccacac ataaatatat ctactgtaac
     6121 taagtaagcg atttgttcag gtgtaaactt caaacttgta ccaacaatga ttggaactaa
     6181 gatagcacct gcgtacatag ctaaaagatg ttgaacactt aggattaaat ttttcattat
     6241 tcttctccca ccaatgtcac tttgtttcct tctagtgaag caaccttgca gagagaagaa
     6301 actgttaaac ctgcttcttc taaacgttga tgcccatttt ggaaactctt ttcaacaaca
     6361 ataccaatac cagctgtctt agcattcgct tgctgtgcga tatcgtataa tcctaatgaa
     6421 gcatcaccat ttgctaaaaa gtcatcgatg ataagtacag tatcttcttc tgataaaaac
     6481 tcttttgaaa caatgaccgt acttgtttta tttttagtaa atgaatgaat agatgtttca
     6541 taataaccat ccgtcaaagt gctaggtttt gcttttttcg caaataaaca tggcacatca
     6601 aaatgcagtg cagccatgat tgcaggtgcg ataccggaag cttcaatggt taagatttta
     6661 gtaatccctt tatctttaaa ttgctcgtaa aaagtgcgac caacttcatt cattaacttt
     6721 gcatcaattt gatgatttaa aaatccatcg acttttaaaa tcttctcatc aatgacaacg
     6781 ccgtcttcct ttactttttg tcctagtaac tccactctta aaacctcctc agatttgtgt
     6841 gaaacatttt gctcttaaat tggtgctaga tacaaaaaaa tccccaaact aaataatagt
     6901 ttcagggttt atgagtgaac gaacatgcat aacgaatttg tcatgcaatc aatgtaaaag
     6961 aagtttcatc aaataaactg tgaccatcat ataaaatgat ataaatcacc caccatggtt
     7021 acaatttaat ggctgaagct actcctagta ttgtgttgtt actcatagtc atgtcgttca
     7081 aggcaacatg gtagaaactt ctaaagccat attctttaga ttatatgagt ttatgtaaat
     7141 tatttaacga taatagcaaa ttttcggcat tttttcaata actgcttagg taatctttta
     7201 atagttttat aaatgtacag agacgtttaa tgcgaatgaa gacttataac ttaataatgt
     7261 aagggtttta ctttataata agaagggtaa aagattaaat aaacaaattt ttaaaggggc
     7321 gacaactatg gcagatatta ctgtagtaaa tgacactggc gaattataca acgtaatcaa
     7381 tcaaaagaaa tctgaaggtt atttagaatc agagctaaca attattagta aaagtaaatt
     7441 acacctaaat gacttacacg actctgaaat ctcccttatc tcaacaagtg gaacatttag
     7501 tgatagaatg actaaactgt taacaggaga agatggtgaa catgcagttt tatcacgcta
     7561 caacttagcg cctgatgaat tagaaaaata taaacaactt attttagacg ataaaatgtt
     7621 agttgtagcg gttcgtgaca aatcatcaca tcaagaagtg catgaaaata attcagctta
     7681 tgaagagatt gatattacac attttgctga agcatctaaa ggtcccaaag cttagttatc
     7741 acactgaatt caaaatgaga ttactgtact gtctaattta agatagtaca gttttttata
     7801 ccatttaaaa gtttatgaac agtcttttac agcaggcgat tatgctataa tattatttaa
     7861 attggggagg tgttcttatg gaatttaaaa ccattcaatc tgtcaaagat ccacattaca
     7921 acgaagcact taaactttac gatactaagt taaatttatc tttaactgaa gataaacgta
     7981 tcatcaaacg ctcattagaa aacaacaaaa ccgaaaacga ttatgtcttt atcgtaggct
     8041 tagaaaacga tgttgttgtc agtctagcaa ctgcacatta tgaagccaca accaattcag
     8101 catttttaat ttatttattc gcaaaagacc tacccaacca tgatgagtta atgacgcaaa
     8161 cattacatca aattgaacat gaactaaact tattatcaaa ccttgttcat tctagaagta
     8221 ttaacttttt aatgatggaa gtccctaaag aacctgcaga tttaacacaa gataacggcc
     8281 tcattattga acaccgtaga cagtttttat acgaacatca atttgaaaga caaactgaaa
     8341 ttgattacat tcatccaact aatgatggtc acactaaaaa agtggactta tttttaaaga
     8401 aaaatattaa actgacaaag gatatctacg gtacaagtgt taaatcaaat tatattttga
     8461 agtatgtatt tgccaatggt atcgcacgtg aaattattta tgctttatta gaagaaatgg
     8521 atttacgtaa accattttaa acaaacttga aatcactaac aataacgttt aaactatgta
     8581 tgaagcaaga ctgacgtttc actgcccgta gacaaacgtc agtatacata aagtatatgc
     8641 agaaaggact ttaaagtatg ttaactaaag aatttgcaca acgcgtagaa ctaagtgaga
     8701 agcaagtacg taaaattgtt caacatttag aagaacgtgg ttaccaacta agcaagactg
     8761 aatatcgtgg tcgtgaagca actgatttca aagaagaaga tatcgagctt ttcaaagaca
     8821 ttgccgacaa agtaaaacaa acaaatagtt atgatctagc gtttgatgaa ttagaaaaag
     8881 aaaaagactt cctgcaagtc attgtcaaaa acgatgacaa aaacttacct actaatcaaa
     8941 atgtcgctca actagtagaa gatttacgcc tagaaatcca gaaaatgcgc gaagaacgtc
     9001 acctacttgg tcaaatgatg aatcaagtac atcagcaaca acaagaatta aaagaacttc
     9061 aaaatcaact tacatctaaa atcgattcaa atagcgaatc cttaaaagcc atccaaacat
     9121 cacaagaggc tatccaagaa gcgcaagcct ctcaagcaaa agcattagct gaatcaacaa
     9181 ataaagttga aaagaatgct gttactgaag ataaagctga cagtaaagat tcgaaggttg
     9241 ctggagtgaa tacatcaaca gacgctaaga cggatactaa agcagaaaat gcaggcgatg
     9301 gcactgctac taaagtagat aaagaggatc aaatttctgc aactgaagca attgaaaaag
     9361 ccagcgttga gcagtctaaa aatgacaatg cagctgagac ttcaaataaa gaagctacag
     9421 tagatgcaga agcgcaacat gatgctgaac aacaagtagc agaagcccat gcagaagctt
     9481 ctaaacaagc tacttcgaac gattcattgg aagcgaaagc agaaaatgac agcacagctt
     9541 cacagtcaga aatgtcagaa ccaaaacctc aagaagagaa aaaaggtttc ttcgcacgtt
     9601 tattcaacct gtaaacttgt gatttgaaca caaatttaat actcaattca tatatagctt
     9661 tgatttaaaa actgattttt ataaacctat agaactgtaa tttactttca aatttaatac
     9721 tcaattcata aaacctgaaa caagctgata tactccattc aatatctact ttgaagagag
     9781 catatcaaac taatttgttt caggtttttt aattattcat tatgattaat attgaatttt
     9841 gaataaattt ttatagtatg ttacttttaa atgggatggc ttctgtgtac ttctaaatag
     9901 attcatctta ataagtccat tcaatttaaa tgtttggctg tgttagtaac tgacgaatcg
     9961 cacaagtgca cactcatatt cacatttact acaaacgcct ttttgctcaa acaaaaatat
    10021 ttgtttacgg tagcttttga actaccacct gcacacacga acactcaaaa gatgctaatt
    10081 ttgattcgac agaatttttt acaacgtgtt tgttcgaaac gtcttttcaa ggttgatcat
    10141 ttattatctt ttcattcaat aaatatgagg ttagcaattt ttatcaaacc gccatagcca
    10201 catctcgatt caaggataaa tttgttttct catatcttat ctctcatgac agtgcacgat
    10261 atatatcttt tccaaatatt catcactttt ttcctgttaa aatcatttct attattaatg
    10321 ctttaatgac aacttattta atttattgca tttaatgccc tgcttcattt tcaaatatta
    10381 actttaatcg actagctcat cacactattt accctttcca cctatcacta ctgaattcaa
    10441 aacgatttgt ttacaaatcc ccttatgcca acggtcgaat ttcatcatgt ttacatttaa
    10501 ttgcaaatgc cctcttgaaa tattttaaaa ttaatattat tcttagcata ctagtcggaa
    10561 ttatattcaa aaatttgagg agtgacgttc atgaatgctt ttcttacact gattaatatt
    10621 attgtattgg tgattttcat cgtaatattg cacatgatgg ctcgcaaaca tatatctttt
    10681 gcgaaacgtg tgtttacagc tttagggatt ggtatagtat tcggtgtgtt attgcatctt
    10741 atttatggca cacattcgaa tgttattaca tcaacaagtg actggttcaa cattgtcgga
    10801 caaggttacg ttgcattgtt gcaaatgatt gttatgcctt taattttcat ttctattgta
    10861 gctgcattca ctaaaattca aatcggagaa aagtttgcta aaattggtag tctcattttt
    10921 atctttttaa ttggcactgt caccattgct gcgattgttg gtgttgtgta tgccttggtg
    10981 tttggtttag atgcatcaac aattaacctt ggtaacgctg aacaagcacg tggaagcgaa
    11041 attgctaaac aagcgaaaga tttaacagca catacgttac cacaacaaat tttggaatta
    11101 ttgcctaaaa atccattctt agatttcact ggacaacgtg caacttccac gattgctgtc
    11161 gtgatatttg cttcgtttat aggatttgct tatttacgcg tagcacgcaa acaacctgat
    11221 catggtgaat tgcttaagcg tgcgattgac gctatctatt cactagtaat ggcgattgtg
    11281 acgttcgtct tacgtttaac gccatacggt gtattagcaa ttatggccaa cacattatcg
    11341 acaagtgact ttggcgccat ttggacttta ggaaaattct taatcgcatc gtacgctgca
    11401 ttaattacga tgtatatcat tcacttaatt attttaagcc tgttaggtat tagcccaatt
    11461 cgctatgtta aaaagacttt ggaagtatta atctttgcat tcacatcacg ctcaagcgcg
    11521 ggtgccttac cattgaatgt acaaacacaa acaagacgtc taggcgtgcc agaaggtatt
    11581 gccaatttcg ctgcgacatt tggattgtcg attggacaaa atggttgtgc aggcatttac
    11641 cctgccatgc ttgcaattat ggtcgcaccc gtcgctaatg tagaaattga tttacaattt
    11701 attgtaacgt taatcgctgt cgtgattatt agttcattcg gcgttgctgg cgtcggtggc
    11761 ggggctacat ttgcatccat attggtgttg tcaacgttaa acttgccagt cgctttagcc
    11821 ggcgtgctca tctccgttga accattgatt gacatgggta gaacagcatt aaacgtgaac
    11881 gattcaatgc tagctggtac aggtaccgcc aagttaacta aacattggga taaagatact
    11941 ttcgattcaa atgataatgc tgcattaact tcacactaat tcattgcaag aaatacccgc
    12001 cccctctagc tatacttatc attttaagct agaggggggc gggttatttt ggtatcttgc
    12061 tatcgctgta ttaagcctga tttttgcaat tgttctaaca tatctaatct tgctttgttt
    12121 cctaggaaca tctcaatttg ctgcgaccat gtttctttgc gattcccgtt tgtacgttga
    12181 tcatagtact cgctgattgt ctggtcgtaa tctgccattt gtgcatactg tgtttcctta
    12241 tcagcatgat acttattatg atggaagaca tggtcaaatg gtaagcgtgg cttggctgca
    12301 ccattttcgt catctgcggg ttcccctact gccataccaa ataccgggaa gacatagtca
    12361 ggtaagtcta aaatttctcg aacgcgttca acatcatttc ttaatgatcc taaaaagaca
    12421 atgccatacc ccatatcttc agcagttacc gcaatatttt cggcaactaa tgctgcatcg
    12481 attgcaccta ctagcaaacc ttccgttgaa ccatatgcat tttccatatc agtttcagca
    12541 tgttgatcaa ctaaatgatg acgataataa tcaataacaa agacgaataa atagccattt
    12601 tctacaacat aaggttgtcc agaaacttct cgtaaatttt ctttaatctt ctcatcgtcg
    12661 ataccaataa ttgagtatgc ttgcaggaaa cttgacgtcg aagcgctttg tccagcttct
    12721 accaatttct taacaacgtc ttcacttaaa ggtttattct taaattttct aacagaatga
    12781 tgctttttca caagattata tacatgttct gacacgttac ccactcctcg atactttaca
    12841 attaatttaa aatcttcata ttgcaattgt acacgtccaa acttttttat agcaattatt
    12901 tgcttataag ttaataattg aactttttaa aatattgtct catactttaa aaatccagtt
    12961 tctcactcat taccttcatc catctcgaac aaatattctc acaccattat caataaggtt
    13021 gacttagttg agaatacaaa tcttcttttt ttacattttt tacattaaaa tcaagatatt
    13081 aaatatagac acaacctttt aaatcatcaa ctacaaaatc cattatcaaa gcactttata
    13141 ttatctttct ttattttaaa agtaatcatt cactttacaa agttatccag ttgactattc
    13201 tggatcaaaa tgtaataatg ctaactaaga gattagaatt attataatta agcgcaatca
    13261 attgatagtt ctaattcata cttaaattct taggaggaag atatttatgt cattaattaa
    13321 caaagaaatc ttaccattta cagcgcaagc tttcgatcca aaaaaagatc aatttaaaga
    13381 agttacacaa gaagatttaa aaggttcttg gagcgtagta tgcttctatc ctgctgactt
    13441 ctcattcgtt tgtccaactg aattagaaga cttacaaaac caatatgaag aattacaaaa
    13501 attaggcgta aatgtattct cagtatcaac tgatactcac ttcgtacaca aagcatggca
    13561 tgaccattca gatgcaatta gcaaaatcac ttacactatg attggtgacc catcacaaac
    13621 aatcactcgt aattttgatg tattagatga agctactggt ttagctcaac gtggtacatt
    13681 cattatcgac ccagacggtg ttgtacaagc atctgaaatt aacgctgacg gaattggccg
    13741 tgacgctagt acattagctc acaaaatcaa agcagctcaa tatgttcgta aaaaccctgg
    13801 cgaagtatgc ccagctaaat gggaagaagg cgctaaaaca ttgcaacctg gtttagattt
    13861 agtaggtaaa atctaaggag gcattacaac catgcttaat gctgatttaa aacaacaact
    13921 taaacaacta ttagaactaa tggagggcaa cgttgaattc gttgccagcc ttggttcaga
    13981 tgataaatcc aaagaactta aagatttgtt gacagaaatt actgatatgt cacctagact
    14041 atctctttct gaaaaatctt taaaacgtac accaagtttc tcagtcaatc gtcctggcga
    14101 agaaacaggt gtaacatttg caggtattcc attaggtcac gagtttaact cacttgtttt
    14161 agcaatttta caggttagtg gtcgtgcacc taaagaaaaa cagtcaatca ttgaccaaat
    14221 taaaaaatta gaaggttcat tccattttga aacattcatt agtttaacgt gtcaaaaatg
    14281 tcctgatgtc gttcaagcac ttaacttaat gagtgtgatc aaccctaaca tcacgcattc
    14341 tatgattgat ggtgcagtgt tccgtgaaga atctgaaaac atcatggcag tccctgctgt
    14401 ctttttaaat ggcgaagaat ttggcaatgg tcgtatgaca atccaagata ttctttcgaa
    14461 actaggcagt acggcagatg catctgagtt tgaaaataaa gaaccttatg atgtcttaat
    14521 cgttggtggt ggtcctgcta gtggtagtgc agcgatttac acagcacgta aaggtttacg
    14581 tactggtata gttgctgatc gtatcggtgg ccaagttaat gatactgctg gtattgagaa
    14641 cttcattact gttaaagaaa caactggttc tgaattttct tctaacttag cagcgcacat
    14701 tgatcaatat gacattgatg caatgacagg tatacgtgct acagatatcg aaaagactga
    14761 cgaagcaatt aaagttacgt tagaaaacgg tgctgtctta gaaagtaaaa cagtcattat
    14821 tgctactggt gcaggttggc gtaagctaaa cattccaggt gaagagcaat tgattaataa
    14881 aggtgttgca ttctgccctc actgtgacgg acctctattt gaaaataaag acgtagcagt
    14941 tatcggtggc ggtaactctg gggttgaagc agcaattgac cttgctggta tcgttaatca
    15001 tgttacatta ttcgaattcg ctagcgaatt aaaagcagac aacgtgttac aagatcgttt
    15061 acgttcttta tcaaatgttg atatcaaaac aaatgccaaa actactgaag ttgtcggaga
    15121 agaccatgtt acaggtatac gttacgaaga catgaacacc ggcgaagaac atctacttaa
    15181 cttagatggt atctttgttc aaattggttt acttccaaac acatcatggt taaacgatgc
    15241 tgttgaatta aacgaacgtg gtgaaattgt gattgatcgt aacaataata cgaatgttcc
    15301 tggaatattt gctgctggcg atgtcacaga tcagaagaac aaacaaatta tcatttcaat
    15361 gggcgctggt gcaaatgcag cattaaatgc ctttgactat attatcagaa actaaagttt
    15421 cattcatttc actgacagta tcttacattt gttaagatgc tgttattttt ttatcccgac
    15481 ataaaatcat gttatgataa acttaatata tacaacgaga tgtgcgataa tgcttaaagt
    15541 atgtacctct cgcaaacaaa tcaatatgaa aaatgatatt gagaaagaaa agtatgtgaa
    15601 cgaaattatt atgcttttac gtacgatacc tacgtctaaa ttagtacaac caattatgca
    15661 gttatttata gataaagcta tccttaacaa cgtccaaaat gatgcattat tgatagaaaa
    15721 agcaactcat gcacgtaatc atttacgtct atggtcattg caaggtcatc gtgacattcc
    15781 aaactaattc aatgttactc tattaaacat gaatacatat tttttcaatt aaagataaac
    15841 taaggagtta tattacatta tgaaaaagag attactacta agtacatttt tagcatcgac
    15901 attaattctt acaggttgcg cgtccgatca atctgataac gaagatcatc atacaagtac
    15961 tggcatccat gcacctaaaa gcgctaaaaa attagaaaca aaagatatct ttaactcaga
    16021 taagaaaaat agtgatatta gtgatgcaga gatgaagcaa gctatagaaa agtatttgtc
    16081 tgtaaatagc gatatacttg ataacaaata tattatgcaa cataaactag ataaacaaat
    16141 tgacagtcaa acaaaagtga ctgaaaaaca agcagaaaca cttagccact tatctaactt
    16201 agctgttaaa aacgatttgc atttcaagaa atttgtcact gaaaacaata ttcctaaaga
    16261 atataagaaa cccgttgaat taatgatgaa ttacttcaaa gctttaaata gtacaatcgc
    16321 caatgttgat gaagatattg aaaagcttag ctatcaaccg caaaataaaa tcaatgttgt
    16381 cgacgtgcca acaaaatatg ccggtgatgt taataaaaag caacaagata aaattaaaga
    16441 tttcttaaaa tctaaaggta tcaagagtga tgttatcgat aaataactga aagccatcat
    16501 tgcgaaatgt aacacatcat tacatgagtt ttaattcatg acaattcttt atctttaaaa
    16561 gtgactaatc aatttagcta aagtcatcat ttgggcatca agcagcatat tactgtttga
    16621 tgccttttta attgccttaa attctctatc tatgccaaaa ttcccattag ttgacgcatt
    16681 tgactatata cctaacatat tccatactta tattgactct ataaacaaag gatgatcatg
    16741 atgaaagttc gaattacttt tattatttta gcaattttat cgacgattgt ttgcttgttc
    16801 ttagcagcaa tgcatccaac aggaccaaac acagtaactt ttgaacagcc atatttattc
    16861 accctcaaca tcattataat ggtattagtc gcattacctt cacttgtttt agctatatat
    16921 gattatatga gttttagaat ttcttctgct attttacaat ttctaggggc tatctcttgg
    16981 ttctttttat cattgatatt atcgctcaca caatttacac cttttacatt agcgtcattt
    17041 ataacttcaa ttattttgtt cacaagcaca attatcacat tagccattgg tggtaagtct
    17101 gttgaaaaga atgattcccc ttaaattcca aatgaaaaaa aggttctgaa ggccgctata
    17161 aaacacagtt tttcagaacc tctatacttc tattcaatga tatatggttt gcaattttct
    17221 acctttaaat ccacagcttc tgcccttgaa actttgttaa aataaaccat caaacaacga
    17281 atgacaactt gatgtgcaac aatgacaata tcatcttttt gtgtatcttc attgacaaca
    17341 tgattcataa aatgttctac gcgttgatat acatcttcat aactttctcc ttcaggcgct
    17401 ttttgtgaaa aactatgacg aaagtcttta aagtttggat cattgaaata tttatcatat
    17461 ttcggattcg cactgatttc atctttatat tcaccctcaa atacgccaag tgaacgttct
    17521 cttaatagag gggtagtcgt tgatgcaatg tcatatggaa aaatatgttc aaacgtttgc
    17581 tgtgttctta ataagtctga aacatataca tgtttaatct gtttctcttt aaaataatca
    17641 cataaatcgt ctgcactttt tgtgccagta tccgttaacg gcacatctaa ttgtccacaa
    17701 aaataagatc gaaaatgttt attatcataa ttcgattttg attcgccatg tctaactaaa
    17761 taaatcgtca taatattact ccttacctta tgtatttcat atctaccata acactttgac
    17821 tactaattcg atatcaatct taatattcta ttctaaaaaa agaattaatt catattttaa
    17881 attaatgact ctaaaaatag tattgtcttt aatcaagtga tgtgttacta tatgggtgta
    17941 gttcttaaat gactacacag tcttttatat tcatgaacat aatactcctg gatggcgcaa
    18001 cccaacgtca tccttttttt atttgtcaaa tactcgcttt tttatttcca aaatttcctc
    18061 atattaattt attacttttt aatcctatct tatctacatt ttcaaatatt ataatacata
    18121 ttgaccattt tcacgcaaat aaaaaagatg acaactgaat gccatcttta tttcaatttc
    18181 caattgaatt tttttattat ttacgcatag ctcttaaaat taacgttacg attgcaatta
    18241 agataattga accaattaat gctggcaaga tgtaaatact tcctaattca ggaccccatt
    18301 gtccgaatag tttgccacct acccatgatc caataatacc tgcgataata ttgcctaaaa
    18361 taccacctgg gatatcttta cccataatag caccagcagc ccatccaatt aagccaccga
    18421 caattaacat tccaataaat ccaaacataa ttttcagtct cctttttcta tttattttgc
    18481 gttattctaa gtagtacccc ttatttacaa ttctaaaaca aattcaaatt atttttatcc
    18541 aaatattttt aaaagtagta attgaatatc aattttattc aatgtagcta tcgttattta
    18601 aagtctctgt accgataata tcatatacat ttacattatt ttttctgccg aattcatagc
    18661 ttgattattt tatgttatag gactagaata tacacatatt attagagcat ctttgaattt
    18721 taaatcaaga agcgaggtta atgaacaatg aatatgcata ttttatataa cttacgaact
    18781 aaacataatt tagaaattga cgaattagca cagcaattaa atgagaaata tggtactaaa
    18841 tatgaagcac atcaaatttg ggaatgggag aatcatcacc atgaacctaa atttaaagat
    18901 gccatgcatt tagctgactt ctttgatgca ccatatgaaa tgtttttaga aagtaaggtt
    18961 aaagaatatc agaaacattt agaagaagtc gatattcgca tggataaata gatgcaaata
    19021 aaccctcaca acacgtttgg catatatcct ttcaaatcta tactggatat attacattac
    19081 gttgtgaggg tattttatta attaatatga attaagacat tttacaagcg ttaatgcaac
    19141 gaatcttttt agtgatcttg ctcactcttt aatactttac cgttcttagc atcaacagta
    19201 acttcttgtt ttttattacc ttttttcaaa tcgatattgt aaacaagttt gccatcatct
    19261 ttttcaagtg accattcttt aatatcacca tcaaattctt tttgtccttc tttaatggct
    19321 tttttgtaat ctatagcatc gctatattta aagttatcat tttcattcat tgtatcttct
    19381 ttttcagtct ttttgttaat cactttttta tttttatcag caacaagtac ttctgactct
    19441 tcaccagatt tttgttgcgt cactttataa gcccattcac cattagaatt ttcaaatgaa
    19501 attcctttca acttttggcc tttgtaagtt tcttcagctt ttttcacagc atcttctggg
    19561 cttgttttaa catcttttaa agcaataaca tcttttgttg tattagtgtc ttgattagta
    19621 tttgactctg ttgattttgt ttcatctttt ggagtatcat tgccacatgc agtaagcacc
    19681 accgctgaca ttgataacac tgctaatgat tttaatttca taatatcact ctctcttcct
    19741 atttttgaaa ctcataacaa aagcttatat gctatataga ttgtattacc ccttgttttt
    19801 aattttattc ataattatta caaatatttt taaattaatc gtcatgcgtt actttcgttc
    19861 gtactccttt tataaatgaa ccatgtaata taagcatgct attatcgact cagtttgtct
    19921 aatgctttct ttggtacttc ttccttttca acttcttcaa aagtttctac atgatgacct
    19981 ttatgtgtaa ttttcaagta tctatgcggt ttaacatcaa atgtagcagt atacattaat
    20041 tgcgtctctt tcccttcttt attaaaaaca ctttgactat aacttcggag ttgatcatcc
    20101 attctagtag acacctctgt cgttttaaca taagaatcat ccttctttac taatgggtta
    20161 aattgatctg ttataccatg ggagtctatt gtttttaaaa tgaataaagc agcataagcg
    20221 ccaatgatag taagtacaag atatgttatt gtttttaaaa tcgttttcaa aagatcacct
    20281 ctgacaaaat ataaaatagg atgtatctga aaacaactta cataattgta attaaagtgt
    20341 aagtattagg agaaaatgat ggtatttgaa tctgaaagat acgaatcgtt tttaaactaa
    20401 gttattttat agagacttta ttatgaaatt gaaagaagtt aattttaagg ttgtcgaatg
    20461 taaaaacata ttgattaacc ataaaagaga aattattttt gtagatttcg gcataaacgt
    20521 cattaaagaa ttttctatat gatggtgcta atcataacaa agaaagctag gcacctttag
    20581 atacctaact ttcaaagtat tagcgataaa acactatata tactaattta gcttaatttc
    20641 aaacttgttc aatgtcatta acacttttca caagtttgaa agttacattt tttatatcgg
    20701 ctgtattaat ttttacattt tccctatctt tttgtagctc tttatgcgac tctaatgtat
    20761 atttaccacc atcttttgta tttatgacga tgttaccttt aggcaaatgt tctcccatat
    20821 acaagccata ggaaatatga gcaaatctta tgatatgatc caattctttt aaagtgacaa
    20881 cttctttatt aagagtaata ttcctcttag gtgtatacac tctgccagca actgtgtatg
    20941 ttccttctaa atgtatacga acttggtttt catttaaagg tctctctgaa taaacccaat
    21001 tcctagattt attagatttt ccatttattg tatccttgct gtatctatcg taaagttttt
    21061 taaccaaagc tttttctgaa ttatttggta cttcttcaac tttttgtaat tgtttatctt
    21121 gtacacttga ggaattttgt gttgacgcgt ctgcttttgg atatattcca aatgttcccc
    21181 catagatgat acctagcgat agaatagatt ttaatacgat tgaatttttt gagtcatatt
    21241 ttttgaacat atttaattac ctccttgatg taaagcttta tttgctacaa ttataaaaat
    21301 aatagacgtg ttcatgaatt aaattcatct taactcttga ttaactttaa tttgctacca
    21361 ctctgaattt aataactata aatcgtctac acataattgg acaaaatcta agagaataaa
    21421 atttgttaat ttaaaatagc aagcaattca aagttatatg tgtaatagat aaaatagata
    21481 tccctatagt gatgcgttac tagctaaaca taataacaca ttagaagata atgaagttaa
    21541 ggagttactg gattgtttcg actatgtaat taagtataaa aatatccaac gacaaaacgt
    21601 aattataaaa tggtaaaagc tatggtacag tttcaaattg ctaatgacat gcgtatcggt
    21661 gagctacttg caataaagag agtaaatata aactatgaag ataaaacgct agatatcgac
    21721 ggtaaagtta attggataac tgaaaaaaga cgggagcatt cggagtaaag gagacaactg
    21781 aaagaagtaa tagctataag gccacagggc tcactaccca aagcatcgac ttactaagaa
    21841 cacttatgct tggaatgata agtttattga tagagagtac atattcacaa atacgtctgg
    21901 tagccctatc gactcgaaca aaattagcca cattattaaa ggggggcgct gatattagtt
    21961 ctattaagaa acctataacg acgcatacat tacatcattc gcatatatct acacttgctc
    22021 aattaggaat taacttaaaa gcaatgcaag agcatgtagg tcattcagat tataaaaaaa
    22081 atctagagat atacacacat gttactaatc agatggcgaa agatatgatg aataaatttg
    22141 aacgattggg gagttaaaat tggaaaaaga tgatacacta gcagaaatta agcctatgct
    22201 caattttgat gagcaaatag cgaaattaaa acagatgaat atatttttta atattattga
    22261 caccgaaaaa gcaaatgaaa ttcttagaaa aaataattac ttcttcaaac tagcttattt
    22321 ccgaaaaaat ttcgaaaaaa agaatggcgg ctatttcata gaatttgctt atttatcaga
    22381 tttagcaact atagatatga aattaagata cacaatgttg catttaactt tagatattga
    22441 acatagttta aagtatctag tcttaaaact aataacagaa aataaccaag aagatggtta
    22501 taaaataata gatgagttct tatgtattga taaatcatat agcaattcaa attttgacac
    22561 aaattcaaga acaccagaag aagttatgga aaccaaaatc aaaaataaaa acgaaatatt
    22621 caagcatatg aataaacgag gacaactacc cgagaagttg aataaatact atcaaaatcc
    22681 acccgcatgg gtttgcattg aattcatgca actaggtcaa ttcgtttcgt ttctcaactt
    22741 ctattacaag aagtacaatg acgaagaatt gagagttgct aatattttaa tgcctttagt
    22801 taaaaatata agaaacaaat cagctcataa ccaacccatc atagcaaatc taaattatga
    22861 cagtagatta cctcaatatt tatttgaaaa agggaataat ataggcatat ctagaaacat
    22921 gttcggaata aaaaatttca tagatacttt cgctacgcta gaattacata atcaagtttg
    22981 tagtaatgca attatccaag caagatatca cgatttggac caacttcaaa agcgatataa
    23041 aagaaacgaa agctattata ataatgcatt agctatcaaa agatttttta tagctttaga
    23101 taaaattatt gacttcaaca gaccaaaagt ataaactatc tagtgaggaa agagacttat
    23161 aggtctcgcg agttatttta attcgtatgc aagaaaaaga agagctatgc attttattta
    23221 aaatgcgtag ttcttttttt atgcatctaa attcatatta tttttgcaat ataaacatat
    23281 ctttgtgcaa attccgaaca caaaacattc acatcatcct tttttgccct ttttctatac
    23341 cccaaaacac aaaaagcccc gtaagcctat gcctacgggg tttgacaata aattatatat
    23401 tattgttctt ctttaacata tggtaataat gccatatgac gagaacgttt gatagctgta
    23461 gtcaacatac gttgatattt agctgaagta ccagttacac gacgtggtaa aattttaccg
    23521 cgttctgaga taaaacgttt taataattca gtgtctttgt agtcgatatg tgtaatacca
    23581 tttgctgtga aatagcatac ttttttacga cgacgtccgc ctcttcttgg tccacctgcc
    23641 atgattgtgt gcctcctttg ataatttttt cgctttaatt tcgttaattt ttattagaat
    23701 ggtaagtcat catcacttat atcaatcggt ccgtttgcat ttgcaaatgg attatcagat
    23761 tgtttcgtgt ttgatgaatt attgtacgaa ttgttttgtc ctgattgttg accaccgaat
    23821 ccttgaccgt aatcttggaa ttcattttgt tgacgttggc caccattttg ttgcgcattt
    23881 ttaggttcaa ggaattgaac gctatcacac acaacttcag taacaaacac acgacgacct
    23941 tcttgatttt cataattacg ggattgtaag cgaccatcta caccagctaa actaccttta
    24001 gataaatagt tatttacatt atctgcttgt cttctaaaaa caacacagtt aataaaatct
    24061 gcttcgcgct ccccttgagc attcgtgaac gtacgattta ctgcaagagt gaatgtcgct
    24121 acactcacac ctgagggagt ggttctgtat tccggatctt tcgttaaacg acctactaat
    24181 acaactctat ttagcattta aacgccccct ctaattatta cttgtcttcg tcttcacgaa
    24241 taaccatgta acgaatgata tcgtcactga ttttagctag acgttggaat tcgtcagtag
    24301 ctttgttgtt atcagattta acacgtacga tgttgtagaa gccatctttg aaatcattga
    24361 tttcataagc taggcgacgt ttaccccagt cttttgcttc taaaacttct gcaccttcag
    24421 tagctaagat accgttgaaa cgttcaacta acgctttttt agcatcttcc tcaatgtttg
    24481 ggcgtacgat gtacataact tcatatgttc tcattttata tttgcacctc cttgtggtct
    24541 atacggctta tcaatcttaa aacagataag caaggaataa ttttcattac tcacaataaa
    24601 gaattatatc atgcgccatt actttttaca ataataattc aaactactct tcatatcatt
    24661 tttgatatta attcatttga aactttctat gatattttta aaaatacact tcacaaaagc
    24721 gaacatatgt tctataatag ttgtgaggtg gtaaggaatg aatttaaata ttgattggtc
    24781 taaagatttt caagaattcc aagagatact taatagtggt attcatcctg aatggcttta
    24841 ttgtgcaaag gctaatcttg ttttagagcc tgcttatact ggcgaaggca aacaattttt
    24901 cagcactcaa gatattatta acgcgagtaa aattattcca ttcttttaat aaattatacg
    24961 cataattaaa agaggcgaac aattgattcc gcctcttcta catatatact atttaattaa
    25021 cttcactcta tcgtttatac attaaatctg aaatgaacga tatcgccatc ttgcataata
    25081 tattctttac cttctaatcg ttgtctgccc gcttctttag cgccactttc gccaccatat
    25141 tgtacatagt cgtcataact tgttacttcg gcacggataa atccacgttc aaaatcagta
    25201 tgaatgatac cagcacattg aggtgcagtc ataccttgtt taaatgtcca agcacgtact
    25261 tcttgcacac cagcagtaaa atatgttgat aatcctaata attcataagt tgttctaatt
    25321 aatcgatcta atcctggttc ttcgatacct aaatcttcta agaacatttc tttatcttca
    25381 tcatctaatg tagcaatttc ttcttcaatt tttgcactaa taacaatcac ttcagagtct
    25441 tcttgcgctg catattcacg aatcgctttt actttatcat tatcatcatc accaatttca
    25501 tcttcaccaa cattagcgat ataaagcatt tttttagaag tcagtaattg cgcttgattc
    25561 acccattttt gatcttcttc attaaagtca atactacgag cgggtttacc attttctaaa
    25621 gcttctttaa tagttgttaa aatacgtact tccatttcag cagtcttatc tttttgacgt
    25681 gctaattttt caattctagg caaacgtttc tcaacagatt ctaagtccgc tagtactaat
    25741 tccatattaa taacttcaat atcatcaata gggtctactc gaccagcaac atgagttacg
    25801 ttatcatcat caaatgcacg aacgacctga caaatcgcat ctacttctct aatatgtgat
    25861 aagaatttat tacctaaccc ttctcccttt gaagcacctt tcacaatacc agcgatatct
    25921 gtaaattcaa atgtagtcgg caatgtcttt ttaggttgaa ccatttcttc taatttaagt
    25981 aatctagcat ctggcacttc tactatccct acattaggat caatcgtagc gaatggatag
    26041 ttcgctgcta aagcacctgc ttttgttatt gcattaaata atgttgattt accaacgttt
    26101 ggcaatccaa cgatacctgc tgttaaagcc attaatcatt ctcctatctt tgtgtatcat
    26161 catgagattc gatgattttt ttaagttttt tatcaaacgt ttgacgtgga atcataatac
    26221 ttctttgaca attttcacat ttaattctta tgtctgcacc cattctaata atcttaaaac
    26281 ggtttgttcc acacgcatgt tgttttttca tttctactat atcatttatt ccatattttg
    26341 acgccattaa atatgacctc catgtattat aaactactaa acaccgtttt cactatgatt
    26401 ataagcagtc ataattggtt gaggtgtttt aataccttct tgtaaaaaca ttttttgtac
    26461 ttctttgcga ataattcgag ctccagcaaa tccttcacct ggaattgttt ctgcagatat
    26521 tctcaatatt actcttgtat cttcaatagc atcaatacca ataacaaccg gatcactaac
    26581 aaataagtaa tatttactac gtaaagaagt aaatagtttg tttagttttt tatcaacatt
    26641 atcaatgttt tcttcgacag acactggaat tttaacgata gctgtaccat ttgtaattga
    26701 gtagttcgtt atttcaccca tactactatt tggtaaaatt gttaattctc ctgaaattgt
    26761 attgattcgt gttgaacgaa gtccaattga tttaactgtt ccctctgcta cagttgtacc
    26821 accgttattt atcttaacat aatcacctac atcaaattgg ctttcaaata taataaagaa
    26881 tcctgtaatt acgtctttaa ctatagtttg agcaccaaaa cctactgcta agcctacgac
    26941 accagcactg gcaattaccc cttcaacact aatgccaaat ttacttaaaa tcgtcgtaat
    27001 aactataaac caaacgatat acttcactac attttgaaca agagatatta aagttttaga
    27061 gcgctttttg ttactctttt tacttttatt ttgaatctta aatccctgtt caatcatttt
    27121 attcagtatt ttaataacta tgagggctac gataatataa ataacaatca tagcgatttt
    27181 agttgcaatg ttttcatatg tttctatttt tgttaatggc tcaaatagag atgaaataat
    27241 attcatgact tgattcatga taagcgttac tcccttctat atgatatatc aatattgtat
    27301 tcatattttt atatacttcc aacctacgaa agtctcaata tatctagaat caaatgttca
    27361 ctgattacaa tttatttaca cttgcacaaa gagttattat ataaaattgt gtaactattt
    27421 accataccta cgatttaatt gttcaattat tctcacaaaa tcttcttgtg aatcaaactc
    27481 aaatgagatt ttaccaaccg atttttttat tgatatatct actttggtac catactgttc
    27541 tcgcaactgt cgttcttgct gctttataaa tttaggctta gttatatcta ctttgtctgt
    27601 ttccgacttt gacgaaacat tttttaattc attaacatgg ttttctaaat atctgacact
    27661 ccacttttct ttaacaaccc gtttcgctaa cctaagcatt tgttgttcat ctttaattgc
    27721 caataacgtt cgtccatgtg cacttgtcag tcgcccatct tttaccatgt cagcaatctt
    27781 tttcggcaaa tgtaataacc tcaacatatt cgctatatac gggcgcgact tactcaatcg
    27841 tttcgctact tcttgttgtg taattttcaa atctgtcatc aaacgttgat aactttcagc
    27901 ttcttcaatc gcatttaagt cttctcgttg taaattttcg atgaccgcca gttccatcat
    27961 atcttcatct gttaaatctt tgataatcgc tgatacgtat tttagaccag caattttcga
    28021 agctctaaac cttctttcac caactacaat gtaataacct tgaactgttt ttctaagcac
    28081 aattggttgc aaaattccat attgcttaat tgaatctgcc aaatcattta aatgattttc
    28141 atcgaaagtt tttcggggct gatacggatt cggtttgata tccgatatat ctatttgctt
    28201 aatttgttca tcttttgttt tagtaatacg ttgatcttca ctttttgaca attcactcac
    28261 atcacttttt atttgataac aacagttaaa tatattttat gtattctaaa tgagtcagac
    28321 aaccattaac cacactttat ttaaaaaata attcattttt caacttcaag ataccaatta
    28381 caatttcaca aacaaattaa cttttaaatc aaaattttct gaataattgt tgacaaatct
    28441 ttttttactc tgtaagctaa ttaatatctt ataacagttt aatgaaacgt aaacacaata
    28501 aagaggaaag taaaacacac cctgcttata cagagagtct ttagtagctg agagaagatt
    28561 ttgaaagcgt gtttgaaaat ggccttggag tgttgatgcc aatatgaggt gtctacgggt
    28621 tcgcccgtta tagcgataca gtattaacat tgatgttaaa tggcgtactg gattctttac
    28681 gcacgatttt ttgttaataa gtatgggata gcacattact atatccttac ttactgactt
    28741 taattgtgat aattgttcag taagcatatt tacttttaat gcgtactgaa taaggttatt
    28801 tcagcgatgg aataacaaat aaaggtggta ccgcgaaaca taagctttcg tcctttttat
    28861 ccgattcatt cgggtacgaa ggacggaagc tttttttatt ttttcttata ggagggtctt
    28921 aatatgaagg atacacagtt agcccaaatc acattaaccg atgattcaac cggtgctata
    28981 gcgaatccaa tccatttatc tactgcctac aagcatccaa aactaggaca atcgacaggt
    29041 tttgattata cacgtactaa aaatcctaca cgctcaacat ttgaaacctg ttttgccaaa
    29101 cttgagcatg gtattgcatc attcgctaca tcaagtggaa tgtcagccat tcaattaata
    29161 tgtaatctat ttaaacctca tgatgaaatt ttagtttcat tcgatttata tggtggcaca
    29221 tttagattat ttgaatttta cgagcaacaa tacgatatca aatttaagta cgttgatttt
    29281 acagattatg aacaagttga aaaagaaatc actgataaaa cagttgcatt attcattgaa
    29341 ccaatatcta acccacaaat gattgctatt gatgtaaagc catactatca actttgtaaa
    29401 gctaaaggct tattgtcaat tatcgacaat acttttttaa caccttatct ttcaacacca
    29461 ctagcagaag gtgctgatat agtcttacat tcagccacga aatatattgg cggacataac
    29521 gatgtactag caggtgtcgt aaccgtcaaa gatgaatcac tcgcgcaaca gttgtttgat
    29581 tttcacaaca tgactggcgc aacactttca ccaatagata gttatttgtt gttacgtgga
    29641 cttaaaactt tgcatttacg cattgagcgt gcgcaatcaa acgctagaaa acttgctaaa
    29701 aaatgtcagt cacttcaagc aattgacgaa gtactatata gcgggcaaac tggcatgctt
    29761 agtttaagac ttaacaaggc ctatagcgtc gctaaattat tagaaaattt agacatttgc
    29821 atttttgcag aaagtttagg aggtactgaa acattagtga ccttccctta cacccaaaca
    29881 catgttgata tgccagatgc tgaaaaagat aaacgtggca ttgatgagta tttaatccgc
    29941 ttatcactag gtgttgaaaa ttatgaagac atcgaacgcg atatcatcca agcattagat
    30001 aaagctcaga ttggagagat tgtatgacac tttcaaaaga gacagaagtg atattcgatt
    30061 ggcgtagagg tgtggaatat cattcagcta acccaccact ctatgattct tcaacattcc
    30121 atcaaacaag tcttggtggc gatgttaaat atgattatgc acgaagtggc aaccctaacc
    30181 gtgaactttt agaagagaag ttagcacgat tagaacaggg aaaattcgct tttgcttttg
    30241 catcaggtat tgctgctatt tcagcagtac ttttgacttt caaatctggt gatcatgtca
    30301 tcttacccga tgatgtatat ggcggtactt ttcgcctcac tgagcaaatt ttgaatcgat
    30361 ttaatattga atttacaacc gtagatacta caaagctcga acaaatcgag ggtgccattc
    30421 aatcaaacac aaaattaatt tatatcgaaa caccatcgaa tccctgtttt aaaattactg
    30481 atatcaaagc tgtttctaaa atagccgaaa agcatgaact actggtagct gtggacaata
    30541 catttatgac accgttaggt caatcacctt tattacttgg cgctgatatt gtcattcata
    30601 gtgctacaaa atttttaagt ggacatagcg atttaattgc tggtgctgtc ataactaata
    30661 atgaggcaat tagtgacgct ctttatttaa tacaaaatgg tacaggcaat atgttatctg
    30721 ctcaggatag ctggacactt gctaaacatt taaaaacttt tccaatcaga tttaaacaat
    30781 ctgtcgaaaa cgctcaaaaa atcgtgtcat ttttaataaa gcaagatgaa atttcagaag
    30841 tttattatcc gggactcact actgctcatt tagaacaagc taaaaatggc ggtgccgtta
    30901 ttggctttcg tttagctgat gagtctaaag cacaacaatt tgtcgatgca ctgacattac
    30961 cactcgtttc agtgagtctg ggcggtgttg aaacgatcct ttcacatcca gcaacaatgt
    31021 ctcacgctgc actacctgaa gaagtgagac aagaacgtgg tatcactttc ggtctattcc
    31081 gattaagtgt tggtctcgaa gatcctgatg aactcattgc agacatcaaa tacgcattaa
    31141 aggaggcatt caatgagtca attcctcaca caattgaaag ataatgtttt agtagctgat
    31201 ggcgctatag gaaccatttt atactctgaa ggattagaca cctgtccaga agcatataat
    31261 cttagccatc cagataaagt tgaacgcatc catcgttcat atattgaagc cggtgctgat
    31321 gtcattcaaa ccaatactta tggtgcaaat tttgaaaagt taaaacgatt cggtcttgaa
    31381 gataaagtta aagcaataca tcaagccgcc gttcgcatcg caaaaaaagc agcaaataaa
    31441 gatacgtata tattaggcac agttggtggg tttagaggta tcaaacaaga ggatatcagc
    31501 ttacaaacta ttctttatca tactgaaatt caaatagaca ccttaattga agaaggcgtt
    31561 gacgcgctac ttttcgaaac gtattacgac ctagaagagt taacaaatgt catttcacga
    31621 acgagaaaga aatacgacat tccaatcatt gctcaattaa ccgcttcaaa cacaaattac
    31681 ttagttaatg gtcaggcaat caatgaagga ttaaaacaac tcgttcaatg tggtgcaaac
    31741 atcgtgggac tcaattgtca tcatggcccg caccatatgc aagagtcttt cacacatatt
    31801 gaattaccag agcacgcatt cttatcttgt tatccaaatg ccagcttatt agatattgaa
    31861 aatagtgaat ttaagtatag tgacaatgca caatatttcg gtcaagttgc tcaaaatcta
    31921 attcgcgaag gtgttcgttt aattggtggt tgctgtggta caacgccaga gcacatcaaa
    31981 tttattaaag aatctattca gacacttaaa cctgttaatg acaaaaaagt gattccgata
    32041 ccaacgaaag cacttttcaa tccatctcaa aataaagtta gacaatcatt aacatctaag
    32101 gttcaagaac gtccaaccgt tattatcgaa ttggatacac cgaaacattt agacacggat
    32161 agattttttg aaaatatcgc taaacttgat aaagctaatg tagatgcggt aacactcgca
    32221 gataattcat tggcaactgt cagaattagc aatattgctg ctgctagctt aattaagcaa
    32281 tattacaata ttgaaccact cgtacatatt acatgtcgag accgaaactt aatcggcttg
    32341 cagtcccatt tacttggatt atcgctcatt ggcgttaacg aaatattagc cataactggt
    32401 gatccttcaa aagttggtca cttaccaggt gcaaccaatg tctatgatgt taattctaaa
    32461 ggattaactg aactcgctct aagatttaat caaggtatta acactgacgg tgatgcgctg
    32521 aagaaacgta cacacttcaa catcgctggc gcctttaacc ctaatgttcg taaattatat
    32581 ggtgccgtca aaagattaga gaaaaagata gaaagcggaa tgtcttattt tataacacaa
    32641 cccgtgtaca gcaaagagaa aatcattgaa atttaccatg ccactaagca cttgaacaaa
    32701 ccatttttca taggcattat gcctatcgca agttacaaaa acgcactctt tttgcataat
    32761 gaagtgccag gaatcaagat gtcagatgaa attttacaac aatttgaagc agttaaagat
    32821 gataaagcca aaacacgaga actaagtctt aagctttcaa aggatttaat cgatactgtt
    32881 catgaatatt ttaatggttt atacattatc acaccgtttc aaaatgtcga agattcatta
    32941 gaacttgcag catactcaaa atctattact gctcacaagg aggcaatatt atgacaacaa
    33001 ttaaaacatc aaacttagga ttcccaagat taggtagaaa aagagaatgg aaaaaagcca
    33061 tcgaaagtta ttgggcaaag aagatttcta aagaagaatt agatcaaaca ttaactgatc
    33121 tacataaaga aaatttatta ttacaaaagt actatcactt agatagcatc ccagttggtg
    33181 atttctcttt atatgaccat atattagata cgtcattatt attcaacatc atccctgaac
    33241 gtttccaagg aagaactatt gatgatgatt tattatttga tattgctcgc ggtaataaag
    33301 accatgttgc aagtgcactt ataaaatggt ttaacactaa ctatcattac atcgtacctg
    33361 aatgggacaa tgttgagcct aaagtgagtc gcaatgtatt attagatcgc tttaaatatg
    33421 cccaatcttt aaacgttaac gctcaccctg tcattgttgg tccgattact tttgttaaat
    33481 tatcaaaagg cggtcaccaa acttttgaag aaaaagttaa aacgttatta ccactttata
    33541 aagaagtgtt tgaatcatta attgatgcag gtgctgagta cattcaagtt gatgagccaa
    33601 tcttagttac agacgacagc gaaagctatg aaaatattac acgtgaagct tatgactatt
    33661 tcgaaaaagc tggtgttgct aaaaaattag tcattcaaac atactttgaa cgtgcacatc
    33721 ttaaattctt aagttcttta cctgttggtg gtataggttt agactttgtc catgataatg
    33781 gctataacct taaacaaatt gaagctggag attttgataa atcaaaaaca ttatacgctg
    33841 gaattattga tggtcgtaat gtatgggcaa gtgacattga agctaaaaaa gtcttaatcg
    33901 ataaattgtt agcacacact aatgaacttg tcattcaacc atcatcttca ttattacatg
    33961 ttccagtatc tttagatgat gaaacattag atacaagtgt tggcgaaggc ttaagctttg
    34021 caactgaaaa attagacgaa ttagatgcat tgcgtcgcct atttaatcaa aacgatagtg
    34081 ttaaatatga taaattaaaa gcacgttatg agcgtttcca aaatcaatca ttcaaaaact
    34141 tagattatga tttcgaaagc gtgcgtactt caagacaatc accattcgcg caacgtattg
    34201 aacaacaaca aaaacgtttg aacttaccgg atttaccaac aacaactatt ggatcattcc
    34261 cacaaagccg agaagttcga aaataccgtg cagattggaa gaacaaacgc attacagacg
    34321 aagcatatga aacattctta aaaaatgaaa ttgctcgatg gattaaaatt caagaagaca
    34381 ttggcttaga tgtattagtt cacggtgaat ttgaacgtaa tgacatggtt gaattcttcg
    34441 gagaaaaatt acaaggtttc ttagtaacta aattcggttg ggtgcaatca tatggttcac
    34501 gtgccgtaaa accaccaatc atttatggtg atgtaaaatg gacagcgcct ttaactgttg
    34561 atgaaacagt ttatgcacaa agcttaacag ataaaccagt taaaggtatg ttaactggac
    34621 ctgtaacaat tctaaactgg tcatttgaac gtgttgattt accacgtaaa gtcgttcaag
    34681 atcaaattgc tttagcaatc aacgaagaag tattagcact tgaagctgca ggaatcaaag
    34741 ttatccaagt tgacgaacct gcattacgtg aaggcttacc attacgctct gaatatcacg
    34801 aacaatatct taaagatgct gttttatcat ttaaacttgc aacgtcttca gttcgtgatg
    34861 aaactcaaat ccatacacat atgtgttatt ctcaattcgg tcaaatcatt catgctattc
    34921 atgacttaga tgctgatgtt atttcaattg aaacatctcg tagccatggt gatttaatta
    34981 aagactttga agatattaat tatgatttag gtattggtct aggtgtatat gatattcata
    35041 gtccacgtat tccaacaaaa gaagaaatta ctacagcaat caatcgttca ctacaacaaa
    35101 tcgaccgctc attattctgg gtaaaccctg actgtggttt aaaaacgcga aaagaagaag
    35161 aagttaaaga tgcattgact gtgcttgtga atgctgttaa agctaaacgc caagaataat
    35221 cgcagcattt atcatataat aaactaaaaa cgggtgattt tatgacacaa tatcctttat
    35281 ggcaacaatt aaatacttta aaacaagcaa cttgggttga tttaacgcat acatttgatc
    35341 cggaaatacc acgttttagt gagtttgaaa aaggcgaagt ttcaacttta ttcacggtta
    35401 aagatcatgg tttctatgtg caacgttgga atattgtaac gcaatatggt actcacattg
    35461 atgcaccaat tcactttgtc gagaataaac gttatttaga agacattgat ttaaaagaat
    35521 tggtattgcc gttaattgta ttagactttt caacagaagt agcgaacaac aatgatttca
    35581 tcgtaacacg tgcgcatata gaagcatggg aaaaagagca tggtactatt gaacctggca
    35641 cttttgttgc acttcgtacc gattggtcaa aacgttggcc taatattgaa aagtttgaaa
    35701 acaaagatgc gaacggacaa caacatgcac cgggttgggg attagatgct ttgaagtact
    35761 taattgaaga acgtcgtgtt gaagctgttg gtcatgaaac attcgatacc gatgcatctg
    35821 tggacgttgt aaaaaatggt gatttagttg gcgaacgtta tattcttggt caggataaat
    35881 accaagtcga gttattaact aatttagatc aattaccaac tcgtggcgcc atcatttacg
    35941 ctatcagccc taaaccaaaa gatgcacctg ggttccctgt tagagcattt gcaattaaac
    36001 catcaaatga ctaatattac ccaataaatc cataaacaaa taaaaacagg ttatgccaac
    36061 atgtaattaa tactgttgtg ataacctgtt ttcttattat ttatactttg atacaactgc
    36121 agcgatagct tgaccgccac caatacacaa tgatgttaaa ccagtttcaa cttcatcatt
    36181 cagttgatgc aataatgtca ctaatactct agcaccagat gcaccaatag gatgtcctaa
    36241 tgcaatagcg ccacctttaa cattcacctt ttcaggaggt aattttaatt cacgatcaac
    36301 agctaatgat tgtgctgcaa atgcttcatt taattcaaat acatcaatat cgcttaattc
    36361 ttttttacta cgtttcaaag ccttttctac agcgccaact ggtgcaatac ccataataga
    36421 aggatctaca ccatgacttc caaagccatc aagcactgcc aatggttcga tatttaattc
    36481 tttagctttg tcttctgaca tgactaacat catcgcagca ccatcattga ttcctgatgc
    36541 attacctgct gtaactgtac cgtctttttt gaaagctggt cttaatcgac ttaatttttc
    36601 gactgataca ttttcacgta caccttcatc cttagtgact acgattggtt cacctttacg
    36661 ttgaggaatc gatactggaa ctatttcact atcaaattca ccattttgct gtgcacgtac
    36721 tgctttttgt tgtgagttta cagcaaatgt atcttgttct tctcttgaaa taccatattg
    36781 ctctactaaa ttttcagcag taatacccat atgatattga ttaaatacat ctgttaaacc
    36841 atcatatacc atgctatcaa ccattgattg atgtcccatt ttaaaaccaa agcgactgtt
    36901 gttgacaagc attggtgatt gagacatatt ctccataccg ccagctagca cgatgtcatt
    36961 ttcaccagtc acaatagatt gatatgctaa ttgaatcgac tttaacccag aaccacatac
    37021 tttattcacc gtaaatgcag gtactgtttc tggcaagcca cctttcatag cagcaattcg
    37081 tgctggattt tgtccttgtc ctgcttgtag tacgttaccg atgataactt catcaatctc
    37141 acttggattc aaacccgtct ctttaataat atgttctatt aaagtcgcac ctaaatcata
    37201 ggctggcacg tctttaaacg cacctccaaa aacgccaata ggtgtcctgt atgctgctgc
    37261 taatacgact ctcgtcatgt catattcatc tccttatgat atatacaatt ttattactaa
    37321 tacgtctaat gaaccaatac gccactaaca tccaatttat gaaaccaatt gctacgtatg
    37381 ttacattttc attcttgtta tgcatttaac aaatcatatt atacaatgat gtaatttgtt
    37441 tgggcaatcg gaaacgtaaa cggtttcact ttaacatttc accctcttaa atatgctcta
    37501 tcatcctcat ctatagtaca aaattatgct ttgatttacc acaaattatc attaatcatt
    37561 tcgcgtaatg actctaatta aattctatct atcattgcat cgctattcac agctggtttc
    37621 accatcaatt tctcatcaat tttttattac catgacgtct ccagtcaaat attaaatcgc
    37681 tgatgattgt taattccgca attaccttgc agtcacctct ccttccactt catcgccaaa
    37741 tctgccccta ttcactagaa aaaataaata gtatacttag taaattaatt acacatctta
    37801 aaggagttaa aattttatgg ttaatgcatt aacaccaaaa catttagctg aaaagcgtgc
    37861 aggattccat gagttgttct ttgatttaat tttcgtctat gccattcaaa aaattgcaca
    37921 tgtgatttta acaacacaaa acggttccat ttcagctgat ttatttttca aatacatcgt
    37981 catgagtttg ttcttatggt taatgtggtc tcatcaaaca ttttttacaa atcgatttgg
    38041 tcaagttaca ttcaaagacg tctcgtttat gatgtttaat atgttcatca tggtcttcct
    38101 atctaacagc ctatatccgg actttgaaaa gacattcttc ccattcttct tatgcgtggc
    38161 aattatgtat ttaagtatcg gattacagta tttattacat atacgtacag ggttagatta
    38221 tggcgataag cgtacatgtc aagcttttgc gagcgtagcc tttgtgattt catttttatc
    38281 atttctatca ttagtactac cacaaagtat ccattacatc cctggatttt taggcgtatt
    38341 cattgcagcg acaggactta ttccatttca gaaatatctt gtattatcac ctgttaatat
    38401 gatgcattta gtagaacgtt tttcgttact aacaattatt atctttggcg aggtactggt
    38461 tggtttagct tcgtcatcat ttagcattga tcattttagt tacatttata tattccaatt
    38521 tatgatttta attagtcttt tcggtgtata ttggatcatt actgaaaatt atattaatca
    38581 taaattaaca tctatcggtt tccgtttatc gtatacgcat ctattaatca atatcgcttt
    38641 aggtgtgatt aatgctgcaa ttgtttttag taataacaat aaactaaatg acttgtttga
    38701 aattaatatg atgtatatca gtgttttaat attctatatt ggattatggt taatcacgcc
    38761 ttatttccat aatgaactga caaacgcgaa gtatatttca tattcactag gtatactcgt
    38821 tatgtcttat attgtcagcc ttttatttaa aggtcacgac catgtaatga ttatctcagt
    38881 atcagttgca accttctgca tcatgctgat ttattttaaa aatcaacgtc tacgtaataa
    38941 acatgaataa atagtattta cctcggtcaa agtattggaa ctgaatccaa aagtgtcgaa
    39001 cttcacatta tacttttgtg acaaacttca gttatgctac atgatcgagg tttttaaata
    39061 tttccgagga aatcgttagc ctatacaatc atcaaatgat acttataaat aacatatatc
    39121 ctctaatccc cactatctaa aaggaaataa ttcccacaca acataaccac ctcaaaacaa
    39181 ataaatcaat atagatatgt cacctatact tatcccccac atttcattcc acaccaaaaa
    39241 gaacagatga caatcgtaaa gatttatcac ctgctctaaa tattatttca aatactatca
    39301 tcaccaaaat cgacaattat agttcttgtt tgttaaaaat tttaatagac aatatataag
    39361 aaacgctcgt tataactata ccaatgaccg catatgctat gacaactagc catccttcag
    39421 tgctaatttt ttcaaattct aatgcagatg caccactaac cataccatat ataaagaaaa
    39481 agaccacgaa agaaataagt agtagtatag atgcacatat cataatgaca ttggagtttt
    39541 cagcgccaaa tttaaatgtc aatgggaaaa tgatagagta tgcccctatg ataccaaaac
    39601 tcattaaacc tgacataata ccaatcatca cactttgggt cacaatcgta gtcacaacta
    39661 atccaatcat taaacttgca ccgaataaga ttaaataaaa ggcaaagtat gacttaatat
    39721 aatcactacg tttaaccggt aaagtagata cataatacat ccatcttgag tctttttcat
    39781 gtttaatatt atcagtaata ggtgtgatta acataacccc agccattgcc gaactcatca
    39841 acggattaaa tactgcaaag tatcctgcag ctataatagc gactataaaa taaatatatg
    39901 tttgctttct cgttgcataa aaactactta ggaacatacc tttcattata cttcacctcg
    39961 cattatgatt tttgtagcgt catcaatgtg ttttaaaggc tctgcatttt caatttctgc
    40021 ataatcttta actaaaattt gatatttccc ctttgacaat ctagaagcaa tgattaaatg
    40081 cttaggaatt tcaacatctt tatcttctgt cgtaacaatt ccatattgtg ctaaaagtat
    40141 atctttctgt tcagttaaaa tcattcgtcc atctttcata aacactaatt tatcagctaa
    40201 atgttctata tcttcagaaa tatgcgatga tattaagatg cctccacctt gtgcgacaaa
    40261 atcttctagt atttccatta cttcttctct tccagaaaca tccatacctg cagttgcttc
    40321 atctaagatt aataacttca catcatgaga aagcgcaatc gttaaagcta tcttcattcg
    40381 catccctctt gaaaaagttt taattttagt ttgtagtggt aactcgaaat atttgattaa
    40441 atcaaagaat ttttgactat tccaagtcat ataaatagat tgaaatactt tatcaatatc
    40501 tttaatagtc aatttattag gcactctcaa atcatcaaac actacaccta tgtgttcttt
    40561 atattcgaca tcatccacgg tatgttcttc tccaaaaaat gtgatactac cgttatcttt
    40621 atgtcgattg cctactagaa tattaattaa tgtcgattta cctgagccat ttttcccaat
    40681 taatccaact gtctcattag tagaaatcgt taaagatgca tcttgcaatt taaaatccga
    40741 atctttgtat tgtttgttca cactatctac gtttaacaat gttgtcatat ccatgctcct
    40801 ctttgtttaa ttttaataaa aacgtcttct cttcaataag taactaaagg cgttatatat
    40861 gaaaatagca atgataagta gcaaactaaa gctttgatta attccagtag taattgaata
    40921 aagcccaatt actacaatgg ctagtatcaa tattgataag ttgatcgcat atgttttaaa
    40981 taatgcaatt aattctatat ggcgttcacc ttcatccaat atttccaatc gcttttcagt
    41041 gtaattctta tctgcaattt ttggtattct gtcatcaaac cttctattaa acagtgtaaa
    41101 ttgtgtattg aaaatagcac tagcaaaaaa tggtattaaa aagaatagta ttgcatttgc
    41161 tgcagcgtgc cctaccacaa aaataagcaa tactaaaaaa gcaataactg tctgcagaat
    41221 acttaatata cttccattta aaacataacg attcgcaagc aactcatatt gatctgttgc
    41281 atcgatatct acctctttat ctacaagttg cttatacttc aatgcacgtc tttgattcat
    41341 caaaacaatg gcttctacca atatgataat aatcgtcgca acaatcgata ttacaacgac
    41401 attgttatat gtcgcaaacg tcaagttctc aataccaaat ccatcaaaat tacctaaaat
    41461 tccacctatg atacccccta caagtccacc cagtaaaaga tatccgatat atcttagtat
    41521 tttcatgcct catcctcctc aataataaaa acagtttcca ccgtttcatt gaaaatgcga
    41581 gcaattttta ttgccgttaa tactgatggc ataaaattgt ttcgctcaat tagcgatatg
    41641 gtttgtcttg aaacgcccgc ttgtttagca agttgcgttt ggtttaagcc atctcgtgct
    41701 cgtaattctt tcaatcgatt acgcacatcg catcaactcc ttaattacac tgtaaatgat
    41761 atgcgtcttt ttgacaacta tatttgtcaa atctacacca aaaaatatga ttatccacct
    41821 atgtatgaca ttttgaaaca aacacctcaa cgcctacaag tcataattgt ttactttcgt
    41881 tacaccttcc tgcataatta acagcattct aattttagta tgatgcacgc attttcacta
    41941 aatcaaacca ttcaaaggag actattatgg catttacatt atctgcaatt caacaagcac
    42001 atcaacaatt tactggtgtt gactttccaa aactattcaa agcttttaaa gatatgggga
    42061 tgacttacaa tatcgtcaac attcaagatg gcactgcaac atacgtacat caatcagaag
    42121 atgatatcgt tacgtcatct gtaaaaagta atcatcctgt tgctcaaaaa tcaaacaaaa
    42181 caatagttca agacgtctta actagacatc aacaagggca aacagatttt gaaacatttt
    42241 gtgatgaaat ggctgaagct ggcatttata aatggcatat cgatattcaa gcgggcactt
    42301 gtacttatat cgacttgcaa gaccaagctg ttatttcaga attaatccct caataaacta
    42361 tatttatagc aacattttaa ttatttcata aaattttatt gataatcatt atcgttcggt
    42421 ataaagtaaa tactatatac tacttatgag tgaggttgat tatcatgata actaacactt
    42481 ttattttagg catcacaggc ccaacaagtc ttgtcgtcat tagcattatc gctttaatta
    42541 tttttggtcc gaaaaaatta ccacaatttg gccgtgccat cggttctact ttaaaagaat
    42601 ttaaatctgc aacagaagat ttagataaag agtctcacga tacacccagt aaggaatcga
    42661 aacaacagcg agagcaatag cactgaccac accttactgg ttcactttag cgaactacgc
    42721 catcggttag taaaaatttt attgtcgttc gtcattacgg tcatcgtcgt atatgtttca
    42781 tcattttggt ggatgacacc attcataacg tatattaccc gtgcacatgt gtccttacat
    42841 gcattttcat tcacagaaat gatacaaata tacgtgatga ttatattttt catcgcgttt
    42901 tgtttcattt caccagtcat gttttatcaa ttgtgggcat tcattgcacc tggattacat
    42961 aataatgaac gtcaatttat ttataaatat agttttttca gcgtgttatt attctgtgct
    43021 ggcgtcgctt ttgcatttta tgttggcttt ccaatgatca ttcaattcgc gttaaaatta
    43081 tcattaactt taaacatttc gcctgtcatt ggctttaaag catatttgat tgaactcata
    43141 cgttggttat tcacatttgg tcttctattt caattaccaa tattatttat gggtcttgca
    43201 aaattcggtc ttatagatac cacatcattg aaacattatc gtaaatatat ttatttcgct
    43261 tgctttgtat tagcaagtat cattgcacca cccgatttaa cattaaatat attactcaca
    43321 ttgccactca tattgctctt tgagttcagt atgttcatcg ttaagttcac atgccgaggc
    43381 aaaccgccaa cacattaacc ttatacgaat caatgctgtg attatcgtta tactgcaata
    43441 ccgaatattt ccaatatagc aacaaaaaaa caggcactcg gcctgttttt tattttttaa
    43501 atttaaagat taagatagca actaccataa tataagcacc ttgtgctatc aatggttcat
    43561 aacttggata aaagcccaac cagttaatcg ttgggaatcc ttcaataaca tgtcttggca
    43621 tcgcacctaa taattgtaac ttttgaatac ttacgccaag cattttgaat cccataataa
    43681 aaataaagat cgacaacact ctaaatatat agaaaatagg tattaattta actataaatc
    43741 taaataataa tgcaaagatg attaaaataa cgatagctaa agcaatacca ataataaaat
    43801 ctttggtcgc tagctcacct atcatcccca tatagaaaat gataacctcg acaccttcac
    43861 gcaacacaga tattaaacca atcgtcgcta acaataccaa attaccatta ctaatcgcat
    43921 tagcatacat atttttaatc atgtcattcc aacgttttgc atttgaacgt ttgtgcatcc
    43981 aaacaccaac gataaacatt aatatgaccg caacgatacc taatcccgct tccatacttt
    44041 cacgaagaat gccactattc cctaaagttt ctacaaacgt aattgctaag ataatactca
    44101 gtacaagtcc ggcaattgca ccaccaatca cacttgcagt ccctttctta tcttttacat
    44161 tacgcgtcat ggtagtcaat gtcattacaa ttaacaacac ttctagccct tcacgtaaaa
    44221 agataatcat cacatcgacg aagctataac tatggccaac aacctcttta atttggttat
    44281 ttaaatctac taaaccatct ttcacatgtg ctttattatg ttcgtctaat acactttgat
    44341 aatatggtat tttatcttca attttcgtat acaaagcacc gtctttagtt tgaatttgac
    44401 cttcaacata cggccaagtt tctataaaat gtgtaagcgc agcatcagca tccgacaatt
    44461 gattgtcgtc gatagcttta atcgccttct ctaacgcatc atttaattgt gatacatggt
    44521 attgatcatt tgcagacgta ttactttttt tatcgacatg atcaatattt gatttaaaag
    44581 ttgtccaagc atgtgacact tttgccgtat ctaatggtga cttatgaatt gcaattctaa
    44641 gttgtaataa tgcgacttca atttgtccat attgatttgc gtcataattg cgaatcactg
    44701 tttcattact tgtccaaatc tgattcaaac tattgttcaa agattctaat tccgctttat
    44761 ttttatcttt aatcgctttt gtcatcgcag catctttagc atcgacttgc tgttgcaata
    44821 gtttaatttt agaacccgca tctttactag ccaatttctc ttcataagca attaatgact
    44881 tcgttaattg cgaaagtgta tctttttgat tatcattcgc ttttgcatct tcaagctttc
    44941 tcacatctga tttgacagca ttactttcac tattatcttc aagcgataat ttcttaactg
    45001 cacttaccac ttgctcaatt gctttctgct tattgtcatt cgatatcgaa ttattagaaa
    45061 gtgcagattt cgcatccgtt atcacactat atacatcact aatactttgt tgttctgctg
    45121 cctgactttt cagtaaccca aagctacaca ccatagcagc agttattagc attgctacaa
    45181 atttagtcaa ataatgtttc accaaggtat cctcccttac taacacctgg taatactaaa
    45241 aatgaagcag aacctctatg tgtaatatat tcatttaatt tatcattact acctaaatta
    45301 ttttgtatat cgataaattg ttttgtcgct ttttgaaaag caataaaaag taagcctgtt
    45361 tcgaagttac ctgtgcggtc atccgtacca tccacataat taaaggctct acgtaaaatt
    45421 gacgtatttg cttctttcgc tagcctcgta tgggcatctt tatcaataat atactcgcca
    45481 tgactatctt tcgcttttaa gtcaatttca tcaaactctt tcccacctgt taacggtgca
    45541 ccactatgtc gtttccgacc aaatgtagcc tcttgttctt ccagcgcagt acgatcccac
    45601 gtttcaatgt gtatttgaat acgtctgaca acgcaataag ttccatgttt cgcccatccg
    45661 tcatcaataa acacataatc tttaagttga ttattcttcc taggattaat tgttccatct
    45721 ttaaatgcca ttaaatttct aggtgtttcc ttacctttag cagagataaa accagattgc
    45781 gcccaacgta ccttaacaat atctcgaaat ggacgaacta aattatgaac cgcatgaaag
    45841 gatacttgcg aatcatttga gcatgcttga atcataatat caccatcgct gtaatcgtct
    45901 attaactgat cattcggaaa atgcggtaaa tctttaaagg catcgggaat tttactagat
    45961 aacccaattt tcttcatcaa agacttacta atcccaaagg taatcgttaa cttgcttgca
    46021 cctaatccta tcgattcacc ggtatctact ggtggcatta aaggattgtt actcggcttg
    46081 ccaactgtat caccatccat catacgatca gccataaccg tccacttttt aaacattgcc
    46141 ttaattgcat ctctatcttt tgacttcaaa tctaacgcaa cgaaattgca tgttttttgc
    46201 gtgggtgtgg taatgcctgg ttgcacttta ccataaaatt catacgcatc tttttccgga
    46261 tcttctggtg tattgaacat tgatttgaaa gaccacatgc taccaacacc acttgcgcca
    46321 attgcaacac cggcaccgcc aatacctaac attttcaaaa atgtacgtct tgaaaattgc
    46381 gtactatcgt taacttgttc ataatttgtc attcagtaat cacagccatt ttacttagtg
    46441 gctctcctaa tgcattaaca gcatccgcaa atgctttacg gtctttcttc gatacttttt
    46501 caaatgactc ataaccgccg ttgttatctt tatatttatc caataattga ttcactttat
    46561 cgaagttcat ttggatatca tcacttaatt ttttatcttt tttctctaaa ataggtttaa
    46621 ataagtcata aattttttgt gcgccttcaa cgttcgcttt aaaatcatat aaatctgtat
    46681 gtgaataaat ttcttcttca cctgtgattt tagaagttgc aacttcattt aataggtcaa
    46741 cagaaccttg taacattaat tttggtatga tatctaatgt atcagctttg gcatgcaatt
    46801 cttttgcatc tttcaataat tgttgtgcat cttttttagt cacatcatca attttcttat
    46861 cttcgtataa tgctttttca atcttatgat atcctgacca ttctttttcc tttttctctt
    46921 ctttcatatc tgcaagacgt gcatcaattt taggatctaa atctccaaat gcttctgcaa
    46981 ctggttcaga gcgttcataa tacatacgaa cttttggata taacgctttt gcttgggcca
    47041 tatcattatt ttcaatcgct ttaacaaatt tttctgtacc ttttaaaaat tcatttaact
    47101 gttcatcagt atatttatca tatgcttttg ttgcttgttt taattctgct ttaacaccat
    47161 catctttttt cgatgtcttt gaatcatcct tcttactatc gtcgttccca catgcagcaa
    47221 ttaataacgt tgatgctaat aatagcgttg ttaacttttt cattttgaca cctcattata
    47281 gaaattctat tatccccata gatgtgttct tataaatatt attttcgcat tccctacacg
    47341 ctaaaataat acattacact taaaacggct gttttaaagc atcctcccat aaacatcatc
    47401 tagttgataa taattatcaa aatcattata ttgttataaa ataatactgt caacaacctt
    47461 ttatttttaa aaattaaata aaagagcgct gccattttaa atgtcatcac tcttttgtaa
    47521 gtctaatttg tcatttttgg tcgtattctg attttaataa actatagatg taactcgatg
    47581 aataaatacc atttagtaat tcattgtcac gtaacatacc ttctctagta aatcccagcc
    47641 tttcaggaat agcccggctt ttttcattat taactgcggc actaatctca attcggttta
    47701 agtcaagctc ttcgaaacaa tactttatca atgcctcaac tgcttgtgtc ataatcccat
    47761 gaccctcaaa ttctttatct aaatagtacc ctaatgaagt ttttctgtgc atgtgattaa
    47821 tttcatgtaa accgatgaca ccaactagcg ttccttcata ccaaatgcca cactgaaatc
    47881 cattaccatc agcaaattgc aaaagtcctc ttttaataaa tgcacgcgta tctgatggtt
    47941 gctcagttgc atctacccaa ggtaaccatt ccctaagtga atttcttgaa cgattgacta
    48001 aattgaaaag cgcttctgtg tcatgagctt ctaaaatttt taatgttatt tgttcattca
    48061 ctttcattcc aaacatacca tcacatcctc attcattttt catataattc tgtaaattat
    48121 cattataata acatattaat gttacgcatt gtatcttaaa tttgttgtcc ttccccaact
    48181 tgcattgctt gtagaatttc ttttcgaaat tctctatgtt ggggccccgc caacttgcat
    48241 tgcttgtaga atttcttttc gaaattctct atgttggggc cccgccaact tgcattgtct
    48301 gtagaaatta cggacccaat ttctctatgt tggggcccat ccccaacttg cacattattg
    48361 taagctgact tttcgtcagc ttctttgttg gggccccgcc aataagcgtt gtagtgccta
    48421 ttactttgat tgatgtccaa gtttcctatc acacaactta atttaatcac tactttatta
    48481 ttcattccaa atttatattt aaaaatacga caaaacagtg ctaaaatgct attaaaggag
    48541 gcactgctca tggcatcatt gaaaaataag cattttatga ttgggctatc actaacattt
    48601 atagtcgcat tatttagctt tttagcagct aaattgccaa tcctagataa ggttggcgca
    48661 ttaactatcg cgatattaat cgctattcta tatcgtcact ttagaggata tcctgaacaa
    48721 tatagctcag gtattacgtt ttcatctaaa tatttattaa gatttgcaat catcctatat
    48781 ggacttaaac tcaatatatt cgatattatc ggtcaaggta gtaaactatt agccatcgat
    48841 gtaggtgtcg ttattttcag tattgtaatg atgctctttg tcaacaaact gttgcatggt
    48901 gacaaaaaca tcgcattatt actaggtgtc ggcacaggcg tttgtggtgc tgctgctatt
    48961 gccgcagtcg ctccaatatt caaatcacgt gaaaaggata cagctattag tatcggtatc
    49021 atcgcattga ttggtacgat attttcactt atatatacag ctatctacgc tatcttttca
    49081 atgacgacaa atgtttatgg cgcttggtct ggtgttagtc ttcatgaaat tgcacacgtt
    49141 gtcttagctg gtggctttgg tggtagtgat gcacttaaaa ttgcacttct tggtaaactt
    49201 ggtagagtat tcttactgat tccattaacc atcgtactta ttttaattat gcgtttccgt
    49261 tcatcagaat catctagcaa gggtcgaata agcattccat actttttaat tggatttgtc
    49321 attatggcct tagtgaatac atatgtaact attccgtcag cattgctaaa tattttaaat
    49381 actgtatcaa caatttgctt attaatggcc atggttgctt tagggttaaa tgttgcattt
    49441 aaagatctta aaaatcgcgc acttaaaccg cttatgacaa tcattattac ctcaatatgc
    49501 ttgtcatcac ttgcctttat cgtcgttcat tggctatata gttaatatga aaagacgctc
    49561 aaacacttac aaatttagtg tgccgagcgt cttattttta tactttaaaa gtcgtattgg
    49621 ttgttttctt cttcaaacac ttgttgttgt actttggcag ttcgcattgt ggattgtgcc
    49681 aacgctttta accgaaatac aacatcatca ttgacaattt gttgatttga aaaatctttc
    49741 tcttcaataa atacatacgt ttgcatcgta tgtgctttca tgtaactcaa tattggtttt
    49801 aaatgcattt caggaattaa ataatgttta ctagaacctg ctgtcgctac aagtcctatt
    49861 accttgtcac gaaacgcatt gactggaagt agatcaaaca catttttcaa agcaccaggg
    49921 atggaagctt gaaaaattgg aaaaccaata aaaatcacat cagcctgcat taacgacgtc
    49981 gttaatttat atacatctcc tgtagtatct agataattct ttccaacgct aaattctaat
    50041 tcaagttctc gtaaatccat caactctatt tgatgtccct cattgatgac ttctagttca
    50101 ttttttaaat catccatagc aattctcgtt ttagaaccta ctgtggaacc tgacaataat
    50161 acaatattca tgatgacgcc cctcctattt tgataaatgc tttttaatcg ccggtataat
    50221 gtcgttgcca attaactcaa tattcttcat aacattttca aatggcacac cgccaaaatc
    50281 aagctgtgcc ataaaacgtt gatgaccata caactcgtgt tgatacaata tcttttcaat
    50341 aatttgttgc gggcttccaa ccattagcgc ttctcgataa tctgacgaat tagcaaattg
    50401 ctgtttcgga taaccaacac cacgaataaa tgacatccct gtattcaaat gtggataaaa
    50461 ttctctcata gcatcctgag ttgtttcagc tgtataaaac agactcgctg tacttactgg
    50521 taaagactta ggcgaagcat cgaaacctgc ttcagttgcc gcttgacgat aagcatctat
    50581 agaaccttta aagttcattg ctgggccacc aagggttgta atcatcattg gcacaccttg
    50641 ttttcccgct ttaatagcac ttgcaggtgg accaccaaca gcacgccata ttggcaatat
    50701 attatcgatt ggtcttggga atattttcat atttctaagt tctggacgat attttccaga
    50761 ccaagtaata cgctcagttt tatttaactc taaaagtaaa cctaattttt cttcaaacaa
    50821 ttcatcatag tcttttaaat catagccaaa caagtcaaaa atacctgttc ttgatgctct
    50881 gccagctaca atttcggctc taccatgaga aatcaaatct aatgtcgcga agtcttcaaa
    50941 tactcttaca ggatctgttg cactaataat cgttgaagaa cttgaaactt taatatgctt
    51001 tgtcgcttgg gcaattgcac ctaacacaac cgtatgtgcc tgtgttgtaa aatgctcctg
    51061 atgactttca ccaactgcaa aaacatcaat acctgcttca tctgctaatt tacttgcttc
    51121 aataatttca ttaatacgtt gctcataact aactttttca cctttcaatg gattcaataa
    51181 atgatcacct aaggaataca aaccaaactc aagaggcgta tttttattca tttctaattt
    51241 ggccattaaa cattctcctt tatatttcgt gtaacttact ttcaatttgt tcacgttctg
    51301 cttctaaaaa gtcaggcaag ttcaattgac ttcctaattg ttcaacaggt gtatcaatag
    51361 taaatccagg cgcttcagtc gcaaattcat acataattga attatggcga tagtataatg
    51421 atttaaagaa atagcgatca attatacctg aattactttg tggttgttgt tgtaatttct
    51481 tgtaaattgc atctaagtca ctcatttgtg gtgtattaac tgcaatatga tggatataac
    51541 ctcgtccagg tctttcacgt tgtccctgtt gctcaataac tacaaaatcc gaatataaac
    51601 cttgtggtgc taatgtcagc acatcgaatg atttattatc tcttttgcga taacctaaga
    51661 cattttccaa aaattctacc gtacgcgctg catttctaac tcttaattcg actggcccta
    51721 ttcctaaaat ttgatatgct tgaggtattt cactataagc gttatgttgc cattgatgtg
    51781 gtacttcaaa actatcatta acaagcaata tgatttctaa gtcgtcttca tctttaaaga
    51841 caacaccttc ttgtccaaga tagtacaaac gttcagactt aataccatta ttctcaagac
    51901 gtttttcaaa ataatgaagt gccgcttgat ttggtactaa taatgaaaat cgataaatcg
    51961 tttcagtacc tggctgctta tgacccgcat tgggaatttc aaaaaagctt aaaattgttc
    52021 cggctgtacc tacttcgtcc ccataaaaca aatgatacat tgaaggattg tcttgattaa
    52081 ccgacttttc aactaatcgt aatccaagga catttgtgta aaaatcctta ttacgttttg
    52141 catcttttgt atacatggat atgtgatgat gccctactat attcatacta tccctcctat
    52201 tagtataaat tttataccag cttacataaa aaagatagtt atatgccatt taccccttgc
    52261 aaataaaaat atgtttgtac tcattcgtag atacacagct agtatgtata acgacataat
    52321 aattgcataa ttataaattt atgtgtagca atttattttt tctaaatgtt tataaaatac
    52381 ttcaataact aaatatgcaa gatttcacaa aagcatattg acaacgcttt catacatgtc
    52441 taatataagt ttatcgcaca aaatgcatat aaatacatat taaggaggat tttatgaatt
    52501 ttcttaaacc tgcaaagcat attaagcctt tgccagaaaa tcagatagat gatacctata
    52561 aacgattacg tctccaagta tttcttggta ttttcatcgg ttatgctggg tactatttat
    52621 tacgtaaaaa cttttcgtta gcgatgccgg cattgcaaga gcaaggtttt acaaaagcgg
    52681 aactaggttt tgcactttct gctgtttcca tcgcatatgg atttagtaag ttctttatgg
    52741 gtactgtaag tgatcggagc aatgctcgga tattcttagt tcttggatta gcactcactg
    52801 ctatcgtcaa tttgttaatg ggatttgtac cgttcttcac atcaggtatc ggtattatgt
    52861 ttgtcctatt attcttaaat ggatggtttc aaggtatggg ctggccacct tcaggccgtg
    52921 ttctcgttca ctggtttagt gtaagtgaac gcggaagtaa gactgccctt tggaacgttg
    52981 cgcataatgt tggtggaggt attatggcac ctattgctgc ttggggtatt acaacaactg
    53041 catttatcaa ctttggttat ttaaaaggtt tcgaaggtgt attcatttac cctgcactct
    53101 tagcacttat cattgccgca atttcatacg tattgattag agacacacct caatctcaag
    53161 gtttacctcc aatcgaaatt tataaaaatg actttgctac aagcgataag aaaacattag
    53221 aaacagaatt aactacaaaa gaaattttat ttaaatatgt actgaacaat aaatgggtat
    53281 gggcaattgc ctttgcaaat atatttgttt atttcgtgcg ttatggtgta cttgattggg
    53341 cgccagtcta cttaagtgaa gaaaaacatt tcgacttaaa agcatcaggt tgggcatact
    53401 tcttatacga atgggctgga attcctggta cattattatg tggttacatt tctgataaat
    53461 tattcaaagg tcgtcgtgga cctgcaggtt tcttctttat gttaggtgtc acagtatttg
    53521 tattaattta ttggttaaat cctccaggca atgcttggtt agacaatgtc tcattaattg
    53581 ccattggttt cttaatatat ggaccagtta tgttaattgg tttacaagca ttagattatg
    53641 tacctaaaaa agcagctggc acagcagctg gattaacagg attatttggt tatctgtttg
    53701 gtgctgtaat ggccaacatc gtcttaggtg ctgtagttga taaattcgga tgggatgtcg
    53761 gttttatttt attaacagca attagtgtgt ttgcaatgtt gagctttatc ctcacttgga
    53821 ataaagtagg acaagaaacc gttcatcatt aaatgataaa aaataaagtc atatggttat
    53881 cttatcgaaa gatgatatat tcatctctta taagttcaac catatgactt tttattagta
    53941 ttcaaaaaaa tatttacatt gccacttttg tgtttgccct gctgttttat tcaattgatt
    54001 acaccactta ggataaactc taaaagccat tttcccttga tacttagatg aagctaagat
    54061 acctttttct accaataatt ccctaggaaa tagaaagtag ccatttaatt catcatcgat
    54121 aacagcaaca atcaggtaat cagcaaactc ttcaattttg tatggccgat tataattatc
    54181 ttcgtctttt gtccaacatg tcacgaaata tcccgattta gtcggtgttt tcttagctaa
    54241 cctactttga tatgtttcct ctttaaagct aaatgttaat gcttcgtaat cttgattata
    54301 tttttcttca gttaaatctt taacttctga ttcttcacta aaaatatttt tcaacagtat
    54361 tttagattta cacatatgcc aatctcactt tattttttca taatcgtatc atatatttat
    54421 ttttttcgaa aaatacactt ccgaccgaaa tatactcagc cagaagtgga cgaaatattt
    54481 aaccttctat taattcagat gtatcaactg tcaaacgatc acgtaataaa tagacgatta
    54541 acattgctgc taaagcacaa agtgactcag caattaataa tgaccaaatg acacctgtta
    54601 gtccaaacaa agcattcata ataaataata ctggaatgat aattgcacct tgtaaaatgg
    54661 ccataattgt agcaccacga ccttgcccag tcgcttgaag cataccagta aacaagaaac
    54721 ctataccatt taataataat gatgccattg ttactttcaa aataaatgtc gccatctcaa
    54781 caatggcttg atcagtagta aatagtccga ccatatgatg tccaattgta aatacagcac
    54841 tcatacatac aacaaagata acgccgatag acatgataac tgctttgata acgtctttca
    54901 tacggccttt atttgccata aagttatatg caattagtgg tacaacacct tcacataatc
    54961 ccatgataat aagttctgga aattgcacaa gtctaaatga gataccataa cttgcaatcg
    55021 cgaagtttcc ataatgtgct aaaaataaat ttaaaactaa tcctgtgaat cccattaaga
    55081 tactcattaa aaatgcagga ataccgattt taaagatttc agaaagcatt tctttattag
    55141 gtttcgcaag tttaatatta actgacacaa cgtcactatt tttcataaaa taaatgataa
    55201 agaacagagc agcagcaaca ttactgattg cagtacccaa agctgcacca acaacgttta
    55261 aatcaaaacc aaaaattaaa attggatcta aaataatatt taagcctaca ctagctaaca
    55321 taccaatcat agaaaccatt ggtgccccaa ttgcacgtgc aaattgttct aatatgaaga
    55381 acaaaattac aaaaggtgca cttaaaaaca ttactttcaa ataattactt gttaaagcta
    55441 acgtttcacc tctcgcccct aaaattgctg cgatttgatc actgaatggt aaagtaacta
    55501 aaatcacgat aagtcctagt gcaataccac cataaataga gaaactactt acaaatttac
    55561 tcttactata gtctttcgca cctaataaac gtgaaatata agttcctgca ccaacgccaa
    55621 ataaattacc taaccccatt aagatagcaa atactggcag tgttagagag atagcagaaa
    55681 tcatgtggct atcttctaaa aatcctataa agtaaatatt taatatgcca taaataacgc
    55741 ttaataaagt ccctatcatc attggcaatg agaaatgcat catcgcttta aatactggcg
    55801 atttctcaaa ataatataat tgttcgtctt tcattgttca atactccttg tcttttccaa
    55861 taattagctt actaacaatt agatatctaa ctataatatt aaagacaaag tgactgattt
    55921 ctaccagtca cacttatcat ttattgtaaa ctagataaca ttttagttaa gtttgctttc
    55981 atttgttcat tttcttcttc agataactgc gatacgagtg tttgttccat ttcatcaaat
    56041 atcgaagtga atgcttctac gagtttaatc ccagaggtag tcagccctat attctttctt
    56101 ctcgtatctt gtgcatcgac atagcgatag atcagctttt tacgttcaag gttccttaat
    56161 aaattactga cagttggacc tgttcgttgt aatgctttag caatatcatt ttgtgtcagt
    56221 ccatcttgtt gatgtgcata aagataacct aacgtatgac cttgctcatt tgtaatatca
    56281 aattgctcta acttttgatc agccttttgt ttcatctcat gactaatcat tctaaataaa
    56341 tacgaataag tgaattccat ttattgcacc accatttcgt tagatgtcta actaaatata
    56401 ctgcgacatt tttaaattga caacatgaat atctaattta ttttaaaagt tcctataaaa
    56461 tcttgcgcca taaacatttt gatatgcaat ttttcggatt aaaatatgaa agagattgca
    56521 tatctacgtt tttaagaaat cgcttacaat tacaaatagg aggatattac gttgttaagt
    56581 tatagacaaa tcgaaatttt gtatctttta attcatgagc aaacgtttat tccaatcaat
    56641 accattgcta atcaacttgg tgtatcacct cgtaccattc aatatgatat agcatatatt
    56701 gagcaatatg ctgaaactta tcattaccaa gtcagccgta ataaagctgc aggcatcaaa
    56761 gtaacaacag ctcacgcgac actattaaat gaattagagc acaatctaac aaatcaaatt
    56821 catttttcaa aagatgaacg actcacacat atcgctttaa agttattcga aacaaccgat
    56881 cctgtttcaa caaagcaact tgcgcaagat gttaatgttt cgcgtcggac aattgcagat
    56941 gatattaaaa tgattcaagc ccaactagat caataccatt taaagttaaa ttatgtccac
    57001 aataaaggat tcaatattat tggtgaggaa gatcattatc gtaaagcgta tgcacacttt
    57061 atacatcaat atatgaaaca agctacacct tttatagagg cggatatctt taattcagaa
    57121 tcaatcgcat tggttcgccg tgccattatt aagacattaa atagtgaaaa ttatcattta
    57181 gttcagtcgg ctatcgatgg cttaatctat catatactca ttgccattca gcgtttaaat
    57241 gaaaattttt cgttcgatat acctatcaat gaaattgata aatggcgaca tactaatcag
    57301 tatgctattg cttcaaaaat gatagaaaac ttagaacgca gttgtaatgt cacatttcca
    57361 gagtctgaaa ttatctttat cacgttacat ttactaggct ctaaaatgac tgaacataca
    57421 gcatcttcaa ttacctttga ataccatgat ttatcgcaaa atatacatga attgatcact
    57481 tgtgttagcc aagaattagg cattgatatg tcaaaagaca acaagttaca taccagtctg
    57541 atcacacata tcaaaccagc tatacatcgt attaaatacg atatgctaca acctaatcct
    57601 ttgaggcaag aagttatgcg tcgctatcct caaatcattg aagccgttag caagcatatt
    57661 agtccaattg aacaagatgc tgctattcgc ttcaacgaag atgaattaac atacattaca
    57721 attcacttcg catcaagtat agagcgtgtt gcaacacata aacaatcaat gattaaggtt
    57781 gtcttactat gtggttctgg tataggcacg tcacaacttt taaaatcaaa actaaatcac
    57841 ctgtatcctg agtttcacat ttgggatgcc tattccattt atcaattgga agaaagtcga
    57901 ttattgcaag ataacattga ttatgtcatt tcaacagtac cttgtgaaat atcagctgta
    57961 ccagttattc atgtcgatcc atttatcaat caacaatctc gtcaaaaatt gaatcaaatt
    58021 atcaatgact caagagaaca acgagtcatg aaaatggcaa ctgatggcaa gtcactcgca
    58081 gatttattgc ctgaacatcg catcattata aataaacaac cattatcaat tgaatccgca
    58141 attgcagtgg ctgtgcaacc tttaatcaat gatggcattg tctattcaaa ttatacagct
    58201 gcaattttaa aacaatttga acaattcggg tcatatatgg tcattagtcc acatattgca
    58261 cttattcacg ctggtactga ttatgtacag aatggtgtag gtttcgcact aacatatttc
    58321 actgaaggga ttatctttgg tagtaaagct aacgatcccg ttcaccttgt aattacatta
    58381 gcaacggacc accccaatgc acatttaaag gcattgggac agttaagcga atgcttaagc
    58441 aacgacttat atcgacaaga tttcttagat gggaatattt ttaaaattaa acaacacatt
    58501 gctttaacta tgacaaagga ggcttaataa cgtgtcatta gacattttgt caacaacacg
    58561 catcattgta aaagaacaag taaatgattg gactgaagct ataactatag cttctcagcc
    58621 attactacaa gaacaaatta ttgaacaagg ctatgttcaa gcaatgattg atagcgttaa
    58681 tgaacttgga ccttatatcg ttatcgcacc tgaaattgca attgcacatg caagaccgaa
    58741 caatgacgta catcaagttg gtttaagtct attaaagttg aatcaacatg tggcattttg
    58801 tgatgaagat cactacgcat ctctcatttt tgtattgagt gccatcgaca atcattcaca
    58861 cttatctgta ttacaaaatt tagcaaccgt actgggcgat aaccaaacag tccagcaact
    58921 attaactgca acaaatgcac aagacattaa aaacatttta aaggagcatg attaatatga
    58981 aaattttagt agtatgtggc cacggtttag gaagtagttt tatggtagaa atgaacgcac
    59041 aagaagcact taggcaactt aatgcaccat ctgatatcga agttgaacat agtgacatta
    59101 tgacagcaag tccagagatg gctgacttgt ttatttgtgg tagagattta gctgaaaatg
    59161 ccgaacgtct aggggatgtc ttagttcttg ataatatttt agataaagct gaattacaac
    59221 aaaagctctc agaaaaatta caacaactta acatgattta aaggaggtac gacctatgca
    59281 agcaatcctt aattttatag tcgatatttt aagtcaacca gccattcttg ttgcactgat
    59341 tgcctttata ggtttaatcg ttcagaaaaa acctgccgca acgatcactt caggaaccat
    59401 taaaacgata ttaggcttct taattttaag tgcaggtgct gatgtcgtcg ttcgatctct
    59461 tgaaccattc ggcaaaatat tccaacacgc atttggtgtg caaggtatcg tacctaacaa
    59521 cgaagctatc gtctcactag ccttaaaaga ttttggaaca acagctgcac tcatcatggt
    59581 ctgtggcatg attgttaata ttttaattgc ccgcttcact aatttaaaat atatcttttt
    59641 aacaggtcat catacatttt acatggctgc gtttttagca atcattttaa cagtcagtca
    59701 tattaaaggc tggctaacga ttgttatcgg cgcactcgta ttaggattaa tcatggcagt
    59761 attacctgca ttactccaac ctacgatgcg aaaaattaca gggaatgacc aagtagcttt
    59821 aggtcatttt ggctcaatca gttactttgc cgcaggtgct gtaggtcaat tattcaaagg
    59881 taagtctaaa tcaacggaag agattaaatt tccaaaaggc ttaagtttct tacgagaaag
    59941 tacaattagt atctcgatta cgatggcatt actttacttc atcgcatgct tatttgcggg
    60001 cgttagttat gtacacgaat ctattagtga tggtcaaaac tttattgtct tttcattaat
    60061 tcaaggtgtg acatttgctg ctggtgtatt tattatttta acgggcgttc gtttaatctt
    60121 agctgaaatc gtcccagcat ttaaaggaat ttctgaaaag cttgtaccaa attctaaacc
    60181 tgcattagac tgccctattg tgttccctta tgcacaaaat gcagtattaa ttggattctt
    60241 tgtcagcttt attacaggtg tcatcggtat gtttatctta ttcttatttg gtggcgtcgt
    60301 cattttacct ggcgtagttg cacacttctt cttaggtgca acggctgctg tattcggtaa
    60361 tgcaagaggc ggtattaaag gtgctattgc tggcgccgct ctaaatggta tcctaatcac
    60421 gtttttacca ttattattct tgccattttt aggcgaatta ggtggtgctg caacaacatt
    60481 ctcagataca gactttttag ctgtcggtat cgtgttcggt aacgcagtaa aatatatggg
    60541 attatttggt gcgattctat ttattattat cgtaggtgcg acaacaattt tattaaaagg
    60601 ccgtcaaaaa gaacagcaat agtgttaacg tagaaatata aaacaccgtc acatattgag
    60661 tgaatgcccc ttttatcaag aggaaagcca cttacttatg gacggtgttt tgtattatat
    60721 taaatgatac ttagccatac tatcgacagc tgctaaaatt gcttcttctt gtgtcgcaat
    60781 cggttcccaa ccaagtaatg tttttgcacg ttcgttactt acattgcggt tcatatctaa
    60841 taaaagttta ccttctttag cttgatgatt aaatttagca cctagactca aaataaagtc
    60901 tggtaatttt ttagtagaaa ctttttgagc tatttcaggt ctcttttctt taattaattt
    60961 tgcaatttcc aacaaattaa tttgtccatc agccgtcgca ataaatcgct tgccattagc
    61021 ttgttcattt gtcattgcca aaatgtgcag ttcagctacg tctctcacat caacaacatt
    61081 taacggaatt tgcggtacac gtttcattga accattcaat aaattttcta ataaatgaaa
    61141 gcttcctgaa acgtgtgcat ctaatgatgg cccaaaaatt gcaactggat tgattgtggc
    61201 aaattctact gttgtatttt cattctcaac aaaatcccac gctgcctttt cagctaacaa
    61261 ttttgatttt tcatatactg ataagcctgg ttcatcttca tttgtccaat gactttcatt
    61321 tgtgattgaa tttttatctt tattactaaa accaactgca ccaaagtttg cagtcattac
    61381 cacacgttta acacccgcat gttctgcagc tcttaaaata cgttgtatac cttcaattgc
    61441 aggcttcgcc atcacttctg catcgtctgt tttaccgaaa aacaccggag atgctacact
    61501 caagacatac ttgcaatctt tcattgcttc atcccaatgt tcatcttgtg ataaatccgc
    61561 ttcgacaaac attaatcgct ctgtggaaat gccattgtct tgcattgttt taattacttt
    61621 atcagcttta cttaaatcac gtatcgtcgt ttgtacgtca taaccttgtt ctaataatcg
    61681 tgaaataatt cgcatgccaa caaaccctgt accaccggtt gctaatactt tattattcat
    61741 cacataatct cctctttgtg tctattgatt actcattata gcagtcatta tattttgtat
    61801 atatcaacag acttatattg cttaatattc tatatgaatt ataaaagtaa acatcattat
    61861 attccttaaa atattaaact catctatttt caaataccca atcatttaga aacaaaaacc
    61921 atatatatat catactttga atagttaaag gcaataattt ccactcatat gttcaacctt
    61981 caccaaacac tattgtcacc ttttcaagag caagcaaaca cttccaatga ttcagcatac
    62041 ataaaataac aatattaact taaaatcata tccactaatg cttctaccgt aacattgcta
    62101 aaataataaa cgatgtctaa ttgctttaac tgatgcgtta aatcttctct tgtcattttt
    62161 gttccttgta atgcttcttc cacatctttt atatcacctt gtccaaagaa atccccataa
    62221 atacgacaat ctgcgatacg attttgttca acagaaattg ttatgtctac cgtacctgaa
    62281 gataatcttt cacttcgatt gtattcatat ttgggtgact tgccataatt ccaatcccaa
    62341 tttttatact ttttatcagc taattcatca atcgcttccc aatctgcatc cgttaattca
    62401 tatcgtttcg cctctttaat gtcatcgatt cccaaaatct gcgtcaccat taaattttta
    62461 aattcttcaa tggttatatc acgatacttt tcatccagtg cttctctaag atgaccaaca
    62521 cgtgcgcgca cagatttaat ccctttcgat gcaatctttt tgcgattagg ctttaacact
    62581 ttatccattg cttcataatt aacatcaagt aatagcgaat aaccgccata aatacgatta
    62641 ttcattaatg tcattgcggc gcctgacact tttttaccat tcaatgttaa atcatttcta
    62701 ccgctttgta ccacatctgt tgcacctaat gtatgcaacg cctttatagc tggttgataa
    62761 aatcgttgaa aatcaccata aattgaagtg tcttgttcta aaatacaaca catattaacg
    62821 gcacctttat caacatacac agcgccacca ccagtatctc ggcgaactac ttgaatactg
    62881 tgtttatcta tataatcttg attcacttct atagcagtat tttgaaaacg tccaatttcc
    62941 acttttggat cacaataata agggaataaa atatcttcat ctaaaaagat atgctggtta
    63001 acataaactt gcatagcgag tgcaatcgca ccatcagtaa tatattctcc atttctaatc
    63061 ggttctatta agtacatctt ctgtctctcc aatgttgtta tttttcgttg tgctgtcgtt
    63121 ccggagtgct gctgtaatca atgttgagat atcctcagtt aaatgtatgg tacgttcttg
    63181 aattgaattc ggaatgcgat atgccttttt attcatcgtc atataaaggg cattttcatt
    63241 tttacgtgtc atacgctgaa aaggatgctt cacaaattgt ggtgtagtat aaccaattcc
    63301 aatttccaaa tacaacactt tatcatcttg atgttgctct agaaaagcat tataacgatg
    63361 tagttgcgca tgaaattcag catcttcaac catcccaact tccgctttac gtttattcac
    63421 ttccattggg gcatcacatt ttggacatct tggaatcatc tcccaaggta taagcatatc
    63481 ttgttgcgca acaaccattt tacgaattaa atcatcattg cgatacgttt gagcatgaca
    63541 atgctgacta cactgttgca gtatatactc cccttgtata tgaaatacat gagtcatatc
    63601 ataatcagct acatcgaaag cattatctgc attcgtagtt ataatgtggt actgtttacc
    63661 ttccaccaag gattttaaag cgaggtaaga ctgacctaca ggttgatcta aatagtttaa
    63721 tgtaataaaa cgactctcaa atgcccaata ctcttgccaa ctgccataag gatgtaaact
    63781 cgcttgcaac atatcaaaga agcgatattt ttcaataaaa tctgggaaat tttccgtaaa
    63841 acgctctcct acatatgtaa atccgtcaga tgcagacatg cctgcaccaa ttccaatcac
    63901 tatcgcatct gcttcatcaa tcgcagtacg caatacttca gcctgctttg tcttgtcatc
    63961 cattaacaga gacattgcat tccacttact actctgcatc acggttaaat gcctccttat
    64021 acagttgtaa atccttatct gtaaatacat tgaacacgac tttcaatgtt gaatttgttt
    64081 ctttgagata gctttctact gttcgaacag caatttctgc tgcttcatct tgaggaaaag
    64141 caaatacacc tgtagatata cagcaaaaag cgacatgatt taaactatgt tgatcagcca
    64201 atttaagaca gctaagataa catttagcta acaagtcctg attcatcttt gaaacaggca
    64261 atcgacgtat ttgcggacca accgtatgaa ttatatactt tgctgacaaa ttatatccac
    64321 gtgttatttt ggctttacct acaccttcat tgcgcccttg ttgtcgaatg atctctgcac
    64381 aatcaagtcg aacttgaaca cccgcttttg tatgaataat attatcaatg cagtcatgat
    64441 tagcttgcat acatcctaga aaacgactat ttgcagcatt aacaatagca tcgattttta
    64501 acgtcgtgat atcaccttgc caaacaaaga tattgtcacc ttttatcggc ttcaaatcct
    64561 tcaaatccgt aacatgttga cgattcaaat cacttaacat agcatcttgt acagctaaat
    64621 attcatcact tacaggtaat gccggtctga catttgctaa gcctcgatat aattcccaca
    64681 aatcttcaaa tgaagatggc attaccaata cgtcattgtc atttctctct cgatgcatat
    64741 cattgattaa atattcaagt ctcgctttat ttgattttaa cgtttccatt taagcctccg
    64801 gtaatgctag gaatgcttct ttatcgacat catccaattt gaacaaccaa ttttcttctg
    64861 gtttttcaga gtttaaaatt gtcggttctt cttccgcttt tgtatttcgc tcaataatcg
    64921 ttcctgacaa tggcgtttgc acatcaatga ccgttttcga tgcttcgata ctcacaattt
    64981 catcatccac tttaacttca tctggactta cgaattcaac ataacctact gtcccaatat
    65041 catcttgcaa ttcaggtgtc atactaaaca catacaaatc tcctactttt tctacccata
    65101 aataattggc taactttttc atcttatctt catcctttct cttctattta aaatgctaca
    65161 aataaatttc cgcgagtaat tttaatgttt tacaacgctg ttcaatacct ggaataagcg
    65221 gtgctactaa cacctcatca acttcaaacg tagcaatgaa atcatctaat tgtgctttaa
    65281 ccttttcttg tgtacctgca atgatgcgtg cttgatgtgc ttgaatcatc tctttgtctc
    65341 gatcattaag cttatacttt tgtgctgtgt ctactgaagg aaaatcttca aattctgcaa
    65401 attgtaattt acctaataac caaacatcta aggcatgttg taatgctgct acttccgctt
    65461 cgttatcagc tacaatgaca aatacagatg ccatcacctt tgcgtccatt ttaatcgttg
    65521 atgcttggaa atgttttttg taaatatcaa tgttatcctt cgctgcatgt atcgcattta
    65581 tatctggtag caaaaatgtt ccaacagaaa gccctatacc tagttcggca gctattttgg
    65641 cagatgttgc gctactactt aataaccaca tttctggaaa atgatcaatg tgtggttgga
    65701 cacctaacgt atgcgcactt ggtttatcct ttattgtaag ataatcacgt aataacgaaa
    65761 tcgattcatc gtaactatca tatgtaggat ttattccatc taaagcttgc tttaccatag
    65821 tagtacctgg attattacca atacctaaat caatacgatt tggatataac gctgccatca
    65881 ttctaaaatg ctcagcaatt ttataaggtc gatagtgcgg cagcatcaca ccaccagagc
    65941 caactcgtat gtgatttgtc tgcgccaatg tatgcatcat caaaagttct ggactactac
    66001 acgcaaacgc tggtacatta tgatgttccg taaaccaaat tcgcttaaag ccaagtcgat
    66061 ctgctaattt tgcaagtgtc actgaatctt gcaatgcctt ttgtgcatcc ttaccttcat
    66121 ctattaaggc atagtctaat acgcttaatt taaccaatcc gtcatctcca aacttatcct
    66181 gtcatgtcaa accgacataa cattttagcg ttcttaatac cattccctct tcatataccc
    66241 acgtatatga taacgttttt caattaactt ttatatcttt tcgcctttat ttttcttttt
    66301 catattcata ttttcagacc tacaaatgcc attcattagt ttaattttaa aaatactttc
    66361 catgtaccaa ttctattcta tcaagactgt tcatcattga ttattcattc tttccatggt
    66421 actttgaaaa caatattgaa tagaaaagga atcatagtat gtaccgatac aaaccacttt
    66481 tacaatcaat ccacttacct aatggcatca aaatttcgaa tcgctttgta ttatcaccaa
    66541 tgaccgtaaa cacatcaaca aaagaaggct atattacaaa agaagacttg gcttatgctg
    66601 cacgtcgctc taattcagct ggaatgcaag tcaccggcgc tgcttacatt gaaccttatg
    66661 gtcaattgtt tgaatatggc tttaatattg atcatgatgc ttgtatccct ggattaacta
    66721 acatggcatc tacgatgaaa caacatggta gcctcgctat tatccagcta gcgcatgctg
    66781 gtcgtttttc aaatcaagcc attttaaatt ttggaaaggt gtatggacca agccctatga
    66841 cattgcattc accgattgaa cacgatgtta tcgccatgtc tcatgagaaa atcaatagca
    66901 tcattcagca gtatcgcgat gctacattac gcgcgattaa agcaggtttt gatggtgtgg
    66961 aaatttcgat tgcacaacgt ttgctgattc aaacattttt ctcaactttt tcgaataaac
    67021 gtacagacca ttacggtgcc gactcattaa aaaatcgtgc aagattatgt ttagaagtta
    67081 tgcgtgcggt acaagaagtg attgataaag aagcacctga caattttatt ttaggatttc
    67141 gagcaacgcc agaagaaacc agaggcagtg atttaggata taccattgac gagttcaacc
    67201 aattaatcaa ttgggtcatg gacgtttcaa acatccaata cttagcaatc gctagctggg
    67261 gtcgacatat ttatcaaaat acgtctcgta caccaggtga tcatttcggt cgaccagtta
    67321 accaaattgt ctatgaacat ttagcaggtc gtatcccttt aattgcaagt ggcgggatta
    67381 attctccaga gtctgcttta gatgctttac aacatgcaga tatggtcggc atgtcttcgc
    67441 cttttgtcac agaacctgac tttgtgcata aacttgctga acagcgacca catgatatca
    67501 atcttgaatt ttctatggca gatttagaag atttagccat tccacatgct gcttttaaag
    67561 atattgttaa aatgatggat tatggggaag gtctaaagaa gcatacccgt gacgctttac
    67621 gtcaattgga acagaattat catgactcat cgtcttaaga ctatttttca tggaaattta
    67681 agacagtgtt ataatgacat caatatcaaa aataaggagc ctattaaatc gtgactgaaa
    67741 ttaaagataa agtaattact aaagatgcat ttgcattacc ttacacaatt attaaagcaa
    67801 aaaatcaacc aacaaaaggc gctattgtct acatccacgg tggtggatta atgttcggta
    67861 aagctaacga tttatcccca cagtatatcg atatccttac ggaacattac gatttaattc
    67921 aactaagtta tcgtttatta ccagaagtaa gtctcgattg cattattgag gatgtctacg
    67981 catcattcga tgcgattcaa tcacaatatt ctaattgccc tatttttacc tttggcagat
    68041 catcaggtgc atatttaagt ctattaattg cacgagacag agatattgat ggtgttattg
    68101 atttttatgg ttatagtcgc atcaacactg aaccttttaa aacaactaat agttattacg
    68161 caaaaatagc tcaaagcgta aacgaaacaa tgattgcaca actcacttca ccaacaccgg
    68221 ttgttcaaga tcaaatcgca caacgttttt taatctacgt ttatgcacgt ggcacaggta
    68281 aatggataaa tatgattaac attgctgatt atactaattc aaaatataat attgcaccag
    68341 atgaacttaa aacacttcca cctgttttca ttgcgcattg taatggcgat tatgatgttc
    68401 ccgttgagga aagcgaacat atcatgaatc atgttccaca ttcaacattt gaacgcgtga
    68461 ataaaaacga gcatgatttt gatcgtagac ctaatgacga agcaatcact atttatcgta
    68521 aagttgttga tttcttaaac gctataacaa tgatgtaata tatcattatt ttaaaaaact
    68581 caatttatca tcatgataaa cagttattcg atcaaccata ttattcatac aatttattaa
    68641 gctcataaac agatacgcct gtccctttag ttttcgctaa tgagacaggc gctttatttc
    68701 actttactat ttttaaattc aacactgtga tgctacttat atctgatgtg ccgtgataac
    68761 agcacgattt acatagcata ttaaattcag aagatgaatt taacttgctt tcaattgtgt
    68821 tcctttactt tcagtcgctt caacacgcaa caagtcattt ataatacctg tatagaagtt
    68881 ggcaagttct gcacctttac gtttgaaatc caggaagtcc acaccgataa aatcgacatg
    68941 atcccatcct tgtatgattg gtttaacttg ccagatacct ctgcgtgtgg caggttcatc
    69001 attcgtaaca ttaacaaatg gttgattgga cggatgtaat gacgaaatca ctggtacgac
    69061 accatcattt ttacgccatt cttctcttgc atcatgacca ataattctac tcgttgtagc
    69121 cattaagaaa aatgtaccta aatcaggatt ttcataacct aatggaccag tatgagatga
    69181 tacacctgta taagtcgtat acgtaatatt aggattcata cttgtcatgt tgttcaattt
    69241 tgcagagcca tctaacgtta aatcataggc agcattgtcg tctgatgtcc aaattttgct
    69301 tttactaacg cgttttatat agtcaatgta actctcattt ggtaattgtt taaagcccca
    69361 ttgcgttaat cctaaatcga tattcgaata cttgttaccc ataaatcgat ttaaagcgaa
    69421 catgattttt ctaacagctt ctgtatttcc aaacttatca gctgcttgtg aaccattatg
    69481 tggtgttgct aatgttgtga ttgatgcaac catattgtta tgaccaccag tgaataatgg
    69541 tgatatttct ccaccatgcg ctttatgata ggcaatttct tctttgttac catttcttaa
    69601 aaactcttcc attaaacgaa ttgtttgacc acccatacta tgccctacaa gatgtacctt
    69661 tttaccaggt tcccaattag gcatgattcc tttataagtc ttaccatagc gctcatgtcc
    69721 gtatttagct gcatgtgctg cgccataatc tacgcgacca cctttaatgt aataataaag
    69781 ttctacagcg cgatcatagt tactaccaaa tgcacttaca cttgcttgat gtacattata
    69841 gccttgcttt ctcaattctt cgataacttt aaatttattt ccaccccaat aatttggata
    69901 taaagcaggt gcattatcgc ctactaatcc taaaaatcca tgtacaaaaa caactggata
    69961 tttgttaagt ggttgtactt gattcgcttt aagtggtcga acctttttag catctgctgc
    70021 tgcatttgta gtcgaacgtg ttttaggcgc ttgaagcgca tctttgatta gttgtttatt
    70081 atcagtattt ttatctgtcg gtttctctgg ggaattttga ccatcgatat gtttacttaa
    70141 atcgccaact tgtggtttct gttcactttg gcgaacagta tcatcttgct ttgcatctat
    70201 gatttgatgc gcaggttgat gtgtatcttg ttgatttgga tgtttgtccg tggttgcatc
    70261 ttgtgctttt gttgatttag gtgcagtttt atcattagac gggggtgtag ttgaagttgg
    70321 tgctgcttta tcatgattgg gtattacctt ttgtgccgga atggatggtt gtgatttatc
    70381 aacatcattc gattgtgacg ttgtcgattg tgatccatta cgttcagcat gatgggtatt
    70441 ttgaacctga tcattttgac gttcagtatt attagtcgca ttattttggt gtgactgttt
    70501 agaaccttgt cgttcagaat cttgctttac ttgattatca ttttgcattc tgattgtttt
    70561 actattttgt gttgattgat gcttcgatga ttgaagcgta tctttacctt ctgtcactgt
    70621 tccactttta ccattctctt tatgcatatc gtctaattgc tttcctgact gcatttgatg
    70681 tgacgttatc gcattccctt gttctcccgg ttgatttagt gtttcttttt gtgccgctgc
    70741 attagttgat gttttttccg aggcttgtgc ttcatgtgat gacacaacaa acattgtagc
    70801 cgctaacact gacaccacgc ctattgaata ctttctaata ctatactttc tttcttcttg
    70861 tcctcttaac atataatcac ctcaaaagta tttttttgac cccctcttga gaatgaaaaa
    70921 caactgcacc ttcaatataa catgacatat attatttttt gattaagact acaaaattaa
    70981 taaaaattta ataatacgat attaaatcga tactaatcat ttacaaatat gtgtatttcc
    71041 aaataattta taaacacttt tagttgtggt gttgaatcaa cacaacaaca tttaagataa
    71101 atattttatt aagtaatata gtttcaatct atatataatt agttaatttg tattggtatg
    71161 aaaataattc aaactataca attatagtaa gttttcagat ttttctaaat taaaataatg
    71221 attcatctca ttaaggggaa gatgcatcat acagttttgt gtattcattt aaacaaaggg
    71281 gttgctttaa tgaatcaata tcattctaat gcacaacaac caagtgcatg gcgttttttt
    71341 gtctatagtt tagtgggcat actatgtttc tttattcctt ttacgattaa tggtaacaac
    71401 actattttcg tcgatcatgt tcatctagcc attcgctcaa tcataggtcc acttatgccc
    71461 tatgttgcac tgattatgat tttaattggt acagcgttac caatagtgag acgtactttt
    71521 atgacttcaa tcacaaactt ggtcattaca ttatttaaag ttgcaggtgc aatgatcggt
    71581 ataatgtatg tatttaaaat cggtccatca atactattta aagctaacta tggtccgttt
    71641 ttgtttgaaa aattaatgat gccattaagt atcttaattc cagtaggtgc aattgcgctt
    71701 tctttattag tgggctatgg cttattagaa tttgtcggtg tttatatgga gcctattatg
    71761 agacctattt ttaaaacacc aggaaaatcc gctgtcgatg cagtggcttc gtttgtcggc
    71821 agttattcct taggattatt gattactaat cgtgtctata agcaagggat gtacaacaaa
    71881 cgagaagcca cgattattgc gactggcttt tcaacagttt cagcaacttt tatgattatc
    71941 gttgctaaaa ctttaggatt aatgccgcat tggaatttat acttttggat aactttagtc
    72001 atcacatttg tcgtgactgc aattactgca tggctaccgc caatcagcaa tgaatcaaca
    72061 gaatattata acggacaaga aggagaacaa gaagttgcta ttgaaggaag cagactgaaa
    72121 actgcatatg cagaggcgat gaaacaaaat gcattaacac catctctcgt gaagaacgtt
    72181 tgggacaatt tgaaagacgg tttagaaatg actgttggta ttttaccttc tatattatcg
    72241 attggttttt taggactgat tgtagcgaac tatacaccat tcattgattg gcttggctat
    72301 atcttctatc catttattta tattttccca attgctgatc aggctttact agcaaaagcg
    72361 tcagcgattt ctattgtaga gatgtttcta ccatctttgt tagtaactaa agctgcaatg
    72421 agtactaaat ttgtcgtcgg tgtagtaagc gtatcagcca ttatcttttt ctcagcatta
    72481 gtgccatgta tactagcaac tgaaattaaa atacctgtct ggaaactcat catcatttgg
    72541 tttttacgcg tggcgttgtc gctattaatc accatccccg tcgctttact tatttttgga
    72601 taaagttgaa aataaaatca ctatcataaa caaacaaaac gagatgaacc cattacattc
    72661 attcagccac ctaagataat taggtgcctt taattaatga tggtcatctc gtttttttat
    72721 cgttatcatt taatcttcca taatttgaac aaaacgtttc gtaatttctt ttggtcgtgt
    72781 tatcgcacca ccaacgactg aacaatgaac gcctaagtcc atcacacgtt tatacatatc
    72841 cggtgtaatg acattacctt ccgcaataac ttttgcatca acactttgta gtacatcttt
    72901 taaaaattgg aagtcatttt gataaagtaa ttgtccttgc gtataactag tatagccatg
    72961 taacgtcgtg ccaatataat caaagccaag tcgtgcggca tttttagctt cttcaacggt
    73021 cgcgatatca gccatgattt caacgttcgg tgcatgtgtt ctaatatatg atactaattc
    73081 gtctaacgtt tctttcggac gttgctgtaa cgttgcatcc aatgcaatga cttcacattg
    73141 gctttctatc agttcatcaa cttcttttga cgttgcagta atgaaaacat ctgagtgatc
    73201 atagtcacgt ttcacaatgc caataactgg taaatctacc gtttctttaa ttgctaaaat
    73261 gtcttcctta gtatttgcgc gaataccaac agcaccacct tcatacgcag ctaatgccat
    73321 tttcgacata ataaaagatg aatgcaatgg ttcatctggt agtgcctgac aagatactat
    73381 taatccatgt ggtaacatta ttcctcactc cataagtcgt ttttcacgta aagtcattta
    73441 caatatatca ttaagataat ttttatcaat gctttttact atcttgaaaa tatttttcat
    73501 atataatagt aatcattaag atgaaggggt gacacaatga aatttgagaa tcgtgttcaa
    73561 cgttatcaac atttatttac aaaaactgat aaacgcatcg tcaattatat aagacaaaat
    73621 ggttatagcg atgccttttc aacgattaac tccttagccc atgcgattgg tacatcacca
    73681 gcaacgatga cacgctttag tcataagctg gattatgaga atttccaaga tttaaaattt
    73741 aatattcaac aagaaatgac agagacagtt attgaaaata gcccaattat tcaaagaatt
    73801 cataaatatc atcaacaaat cattcaacaa actggtgaat ttattgataa cgacattatc
    73861 caaaccttta tcgacaaact tcaatcaagt cgacatatac tctttgctgg actaggtagc
    73921 tctggtttat cagcgactga attttattat cgtatgattc gtatggggct aaaaggtaat
    73981 gttactaccg attcacattt aatgaaaata tcggcatccc tactatctca ttcggatatg
    74041 tttattgcta tgtcaaatag tggtaatact tcggaattaa tttctgcagc ggaagtcgcc
    74101 aaatctcatg gtgcatatgt cgttgccatc acaaattttg aaggtagtaa acttacagat
    74161 tgtgcagatt tagtactttt aacaacggat caatcgcgta ataccgacca tcaatttatc
    74221 aacacacaaa ttgcgacact ctttttaatc gatatcgtga gttatcattt attagaaaat
    74281 acgaatctga gtcaaactta tcaacatact aaatctatta tcctagacaa caaataacta
    74341 gtagtatatt caaatccacc tgcaactgta gacaatcatc gtgattgtcc caacgagttg
    74401 ctaggtgctt ttttaatttc aataccaaat atttttttac attttctaaa attttaatat
    74461 ctcagcttct tcaatttaat ttgcccgtgg cacactgttg gttgatatag tttagattgg
    74521 tcctagatag agtgtgatgt gtggaactaa caacagctct catctctcgt aacggtttca
    74581 aattctattt tagaatgact ccttctttca actatcattg caaacagcca tataatgctg
    74641 catcattttt actcttagtc gtttgtattg gtgcataaac atagtctttt ggtaaatagt
    74701 gtgcaacttt cggctcgata tatttaatga gattatctcc ttgttcagat ataccgcccc
    74761 caattaatat aagccctgga tcatacatga cctgtatttg ggcaatccct tctgctacat
    74821 cttctgccca ctcattcaat atttgttttg caatatcatc accttcttca gctgcttcaa
    74881 acaatactgg cacatgtgtg cttctcgtaa atcctccggc aatcatgcgc tttttcaatg
    74941 cactcgttgc agcacgttgc tcaaacgttg tattttcagt tggacgatac aataaatacc
    75001 caacttcatt tgccttatga agctcaccat tatcaatatg accttgatta ttcttgtacg
    75061 cacccccaat gcctgtacca agcgtcatac aaaagatccg ttctgcttga tattgatgta
    75121 atttcaattc gcctagtaat gcagcgttta catcattttt tactttgaca taaggagaca
    75181 gtgattttaa taatcgctta aaattagtac ctttataatt cggaatggtt ggccctgcgt
    75241 atacaatttc gcctttttgt tcatcaacaa cgcctgctga tgaaatacct atgacaggtt
    75301 ggatcaactg atattgcttc atatatcctg ttacaatctc atatactttg tcagtaataa
    75361 gctcactttt gttgtccggc gttgatattt gttgatagtc aaacatattc aattgcttat
    75421 caataactgc cgatttaatt tgagtgcctc caatatcgat tgcgatgtaa tacaccttac
    75481 tcactccatt tctattgatt ttgaaaaaca ttttcattaa ttatacataa atatgactac
    75541 aattttcaaa aagatattgt tacattttat gatagcgttt acaattatag ctgtaaacta
    75601 tattatcaaa tgatttttgg agggacttca taatgaacaa agatttaaaa ggtttatatg
    75661 cagcgttact cgttcctttt gatgaaaatg gtcaagtaaa tgaacaagga cttaaacaaa
    75721 ttgctcaaaa tgccattgaa actgaagaat tagacggtct ttatgtaaat ggtagctcag
    75781 gcgaaaactt tttattaaat acagagcaga agaagcaagt tttcaaggtt gccaaagagg
    75841 cagttgggga taaagtgaaa ttgattgctc aagtaggttc gttagattta aatgaagcca
    75901 ttgaacttgg aaaatatgcc acagaactcg gttatgatgc actttctgcc gtaacaccat
    75961 tctactatcc atttactttt gaagaaatta gagattacta tttcgatatt atcgaagcaa
    76021 ctcagaacaa tatgattatt tatgcaatac cagatttaac aggtgtgaat atttctattg
    76081 aacaattcag cgagctattt aatcatgaaa aaattgttgg tgttaaatat acagcgccaa
    76141 acttcttcct actcgaacgt attagaaaag cattcccaga caaattaatc ttatctggct
    76201 ttgatgaaat gttagttcaa gctacgattt ctggcgtaga tggtgcaatt ggttctacat
    76261 ataacgttaa tggtcgccgt gcaagaaaaa tcttcgactt agcacgacaa ggtcaaattc
    76321 aagaagctta ccaactgcaa catgattcaa acgacattat cgaaacagtg ttatcaatgg
    76381 ggatttatcc aacattgaaa gaaatattac gtcatcgtgg cattgatgca ggattaccga
    76441 aaagaccttt caaacctttt aacgaagcac atcgacaaac attagatcaa ctcattgcaa
    76501 aatacgattt atagacatca aagaatcaat acattgtaaa ggggatgttg cccatgaaag
    76561 aagttggatt tggcacacta aactgggttg ccgttatcat ttatctacta gctatgttgt
    76621 tcattggcgt ttattttacc aagcgcgcga gccaaagtac caatagtttc tttaccgcaa
    76681 gtggtcgctt gccatcttgg gtagttggct tttcaattta tgctactacg ttaagtgcga
    76741 ttacatttat gtcgacacca gagaaagcat ttttaacaga ttggtcatat atcgctggta
    76801 acattgctat cgtcgcaatt attccattac ttatttattt ctatgtccct ttctttaaaa
    76861 agttaaaggt aacatctgca tatgaatatt tagaagctag atttggccct agcatacgtg
    76921 tcattggctc attattattt gtcgtttacc atttagggcg tgttgcaatt gttatctact
    76981 taccaacatt agcaatcaca tctgtatcag acatgaaccc ttatatcgtt gcatcactcg
    77041 ttggtttact atgtatttta tatacatttt taggtggttt cgaaggtgtg gtttggagtg
    77101 atttcattca aggcgtcatt ttattaggcg gcgctttagt tattattatt ctaggtgttg
    77161 tgaacattaa aggcggtttc ggcactgtct ttgcagatgc gattgagcac aaaaaattaa
    77221 ttagtgcaga caattggaaa ctaaatactg cggcagctgc cattccaatt attttcctag
    77281 gaaatatttt caacaacttg tatcaataca cagcgagtca agacgtcgtg cagcgttatc
    77341 aagcttctga tagtttaaaa gaaacaaata aatcgttatg gacaaatggt atcctagctt
    77401 taatttcagc acccttattt tatggtatgg gtacaatgct gtattcattt tatacacatg
    77461 aagctgtttt accaaaaggc ttcaatacat catctgtagt gccatatttc attttgactg
    77521 agatgccacc atttgtagca ggattactta ttgcagccat tttcgccgct gcacagtcta
    77581 ccatttcatc tagtttaaat tctatatctg cttgtatttc aatcgacatt aagcaacgct
    77641 tcttcggaaa aggtagcgag cgacacgaag ttaactttgc acgtttcatt attatcattg
    77701 caggtatttt cggttttgga atgtcactat acttaattgc ttctaattca aatgacttat
    77761 gggatttatt cttgtttgtg actggattat tcggcgttcc attggctggt gtatttgcag
    77821 ttggtatttt cactaaacgt acgaatacat tcggtgttat ttgtggatta atattgggta
    77881 tcatctttgc ttatgtctat aatggtgttg gcaaaggtaa ctcacctttc tatgtatcta
    77941 ccatttcatt tacagttgct tttgtctttg cttatatact tagcttcatt gtcccttcaa
    78001 aacataaaaa agatataacg ggattaacaa tttttgaaaa agataaacca tcaacataca
    78061 tttcaaaaac ggctacgaaa aagtagattg ttatgataaa accccgtcac taagttatga
    78121 tgcgctgttg cgccaacttg gtgacggggt ttagctttgc catgaattta atttaggtac
    78181 ttcgattcat ttacaatact aagccaatga ttgatcctga aatgattgaa gctagagttg
    78241 aaccaagtag caacctcatt gcaaaggatg caactttttc tccttgttta tcactaatgc
    78301 ctttaattga acctacgatg ataccaaccg taccaaaatt agcgaagctt actaagtaaa
    78361 ctgaaatgat accttgtgtt cgagctgata catcacccag gacattttta aaatcaagca
    78421 ttgctacaaa ctcatttgta attaatttag tcgccattaa agagccagct ggaacagctt
    78481 cgctccatgg aatccccatt aagaatgcga ttggtgcaaa cacatagcca ataagctgtt
    78541 taaagttcaa accaacacta ccaaacatga tattaattgc ttccattaat gaaataaatg
    78601 ctaacaacat tacggctact acaacagcga ttttaaaccc atccatcgca ctatcaccaa
    78661 tcatttggaa aaaggcaact ttcttaggtt ttcctgtttt tccattcaat gttttagttt
    78721 ctgtggattt cgttaagtta tcaatttcaa catcagtatc atcagattta tagggattga
    78781 ttacactggc gatgataagc gcactaaaaa tatttaacat tactgctgta actacgaact
    78841 tgggttcaat catctgcata tatgaaccta gcattgccat actaacagca ctcataccag
    78901 acgtcgcaat tgtatataat ttcgctctag ataatcttgg aataatatct tttattgtta
    78961 aatatacttc tggttgccca aacattgctg ttgaaatagc aaaataactt tctaagcgcc
    79021 ccattctagt tattttatta atagcgatac ctacatattt gataataaat ggtaatacct
    79081 taatataatt aaagatgcct att
//
LOCUS       DAMQWL010000003        49925 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.003, whole genome shotgun sequence.
ACCESSION   DAMQWL010000003 DAMQWL010000000
VERSION     DAMQWL010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 49925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49925
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.003"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            207..1148
                     /locus_tag="PF788_000203"
     CDS             207..1148
                     /locus_tag="PF788_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDG6302496.1"
                     /translation="MTKKVYFNHDGGVDDLVSLFLLLQMENVQLIGVSTIGADCYLEP
                     SLSASVKIINRFSNEDIQVAPSYERGKNPFPKEWRMHAFFMDALPILNEPVKHVASNV
                     SDKEAFEDIIQTLKRQSEKVTLLFTGPLTDLAKALQKDSSIVQYIEKLVWMGGTFLPK
                     GNVEEPEHDGSAEWNAYWDPEAVKIVFDSDIEIDMVALESTNQVPLTLDVRQRWANER
                     QYTGIDFLGVSYAAVPPLTHFITNSTYFLWDVLTTAYIGNKDLVHSIEKKVDVISYGP
                     SQGKTFECKDGRKINVINHVDNNAFFDYITALAKKVN"
     gene            1269..1823
                     /locus_tag="PF788_000204"
     CDS             1269..1823
                     /locus_tag="PF788_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDG6302497.1"
                     /translation="MTTKQLVYTALMTAIIAILGLVPVIPLPFSSVPIVLQNIGIFLA
                     GVILGRKYGTLSVIVFLLLVVAGLPLLSGGRGGIGVFAGPSAGFLLLYPVVAFMIGAI
                     RDRFINEINFWILFVGILVFGVIALDVIGTLIMGMIINIPFTKAISISLAYLPGDILK
                     AIVASLIGTALLNHSQFRQIMGIK"
     gene            1895..2665
                     /locus_tag="PF788_000205"
     CDS             1895..2665
                     /locus_tag="PF788_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6302498.1"
                     /translation="MASISMSDIYCNGTIFENDDEQLIYLTPSFPQRYTSNTWIYKKT
                     PTQERWLKDLERQHQLHTNQGSNHYAFSFPENEQLDNHWMAMFKDMNFELGIMELYAI
                     ESDALANLPRNSDVEIAIVDESHIDAYLKVAYQFSLPFGKDYADAHEEMVREHYQKDV
                     IKRLVAYLNNEPIGVVDVIESENYIELDGFGVLEQFRHQGIGSTIQSLIGEYAISKNH
                     KPIILVADGEDTAKDMYAKQGYVYQSFCYQILKEDIGN"
     gene            complement(2837..3634)
                     /gene="fdhD"
                     /locus_tag="PF788_000206"
     CDS             complement(2837..3634)
                     /gene="fdhD"
                     /locus_tag="PF788_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDG6302499.1"
                     /translation="MNKDVSLGQPIVRYEDGKLFNTTDQYVTEFPLTIMVNGEEFATV
                     ICSPTNLEELVIGFLASEGAILKRDELKSVLIDDSKGFAHVELNKDLGDRFQYSTKRM
                     IASCCGKSREFYFQNDAAIAKTSMSKITLTPMQIINMMTRLQSASHIYQETGGLHNAA
                     ISDGLTFFVHRQDIGRHNALDKLYGFCIQRHITVRDKVLIFSGRISSEILIKAAKIGV
                     GVILSKSAPTTLAVTLANDLNITAVGFIRNGGFNIYSHPERIIDSEQ"
     gene            3924..4706
                     /gene="modA"
                     /locus_tag="PF788_000207"
     CDS             3924..4706
                     /gene="modA"
                     /locus_tag="PF788_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6302500.1"
                     /translation="MKLKRLFAVVIAMLLVLAGCSNSNDNNESKKDDADNGKKQEIQV
                     AAAASLTDVTKKLASEFKKEHKNADIKFNYGGSGALRKQIESGAPVDVFMSANTKDVD
                     ALKDKNKAHDTYKYAKNSLVLIGDKDSNYTSVKDLKDNDKLALGEVKTVPAGKYAKQY
                     LDNNNLFKEVESKIVYAKDVKQVLNYVEKGNAKQGFVYKTDLYKQNKKIDTVKVIKEV
                     ELKKPITYEAGATSDSKLAKEWMEFLKSDKAKEILKEYHFAA"
     gene            4720..5391
                     /gene="modB"
                     /locus_tag="PF788_000208"
     CDS             4720..5391
                     /gene="modB"
                     /locus_tag="PF788_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDG6302501.1"
                     /translation="MPDLTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKLLE
                     SLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHLPVVFTLTGAVIASVIVSFPL
                     MYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEF
                     GATLMVAGYIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNKDK
                     YKEVD"
     gene            5392..5997
                     /locus_tag="PF788_000209"
     CDS             5392..5997
                     /locus_tag="PF788_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDG6302502.1"
                     /translation="MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMI
                     AGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAE
                     PSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDT
                     TKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG"
     gene            6167..7171
                     /locus_tag="PF788_000210"
     CDS             6167..7171
                     /locus_tag="PF788_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HDG6302503.1"
                     /translation="MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGL
                     VRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDY
                     IAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKYRIPWIYGGVVQSTYTEAAF
                     IPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITY
                     GDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITH
                     DILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
                     "
     gene            7202..7708
                     /locus_tag="PF788_000211"
     CDS             7202..7708
                     /locus_tag="PF788_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaB"
                     /protein_id="HDG6302504.1"
                     /translation="MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDV
                     EVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEI
                     DGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELN
                     HLIHELTK"
     gene            complement(7710..8204)
                     /gene="moaC"
                     /locus_tag="PF788_000212"
     CDS             complement(7710..8204)
                     /gene="moaC"
                     /locus_tag="PF788_000212"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDG6302505.1"
                     /translation="MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQI
                     SNNTNTKGNVLNTAQIAGIMAAKNTSTLIPMCHPLPLTGIDVHFSWDETNAPLYTLNI
                     QTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQR
                     QSNQ"
     gene            8267..9526
                     /locus_tag="PF788_000213"
     CDS             8267..9526
                     /locus_tag="PF788_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDG6302506.1"
                     /translation="MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDI
                     VATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVR
                     IMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQV
                     INPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALA
                     EKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAE
                     VLFNKVAMRPGSVTTVAFVDGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQ
                     IIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPG
                     GSRGFKAGHTVDIILTESDAAEEELLL"
     gene            9523..10008
                     /gene="mobB"
                     /locus_tag="PF788_000214"
     CDS             9523..10008
                     /gene="mobB"
                     /locus_tag="PF788_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HDG6302507.1"
                     /translation="MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDI
                     QLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEG
                     FKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQL
                     T"
     gene            10022..10468
                     /locus_tag="PF788_000215"
     CDS             10022..10468
                     /locus_tag="PF788_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HDG6302508.1"
                     /translation="MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKT
                     EYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRK
                     DAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE"
     gene            10474..10707
                     /gene="moaD"
                     /locus_tag="PF788_000216"
     CDS             10474..10707
                     /gene="moaD"
                     /locus_tag="PF788_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin converting factor subunit 1"
                     /protein_id="HDG6302509.1"
                     /translation="MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINN
                     KKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG"
     gene            10714..11313
                     /gene="mobA"
                     /locus_tag="PF788_000217"
     CDS             10714..11313
                     /gene="mobA"
                     /locus_tag="PF788_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HDG6302510.1"
                     /translation="MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNE
                     IIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMIT
                     GKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFK
                     NVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL"
     gene            11333..12355
                     /gene="moaA"
                     /locus_tag="PF788_000218"
     CDS             11333..12355
                     /gene="moaA"
                     /locus_tag="PF788_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDG6302511.1"
                     /translation="MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFL
                     PKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLT
                     TNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL
                     NVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLT
                     MIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFY
                     GCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKIN
                     MNYIGG"
     gene            12550..12693
                     /locus_tag="PF788_000219"
     CDS             12550..12693
                     /locus_tag="PF788_000219"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302512.1"
                     /translation="MCKLAGPQHREFQKEILQTMQVGERGPNTEGDEKSAYNNVQVGG
                     APT"
     gene            complement(12750..12920)
                     /locus_tag="PF788_000220"
     CDS             complement(12750..12920)
                     /locus_tag="PF788_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302513.1"
                     /translation="MFRFISFGQLVVYSTTFIPKKDILQLNGMECDINVKEPLKIYYV
                     VILKSGIEMIFS"
     gene            13046..13396
                     /gene="sarV"
                     /locus_tag="PF788_000221"
     CDS             13046..13396
                     /gene="sarV"
                     /locus_tag="PF788_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator SarV"
                     /protein_id="HDG6302514.1"
                     /translation="MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEK
                     ISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLL
                     DKITKEIEVLSVTN"
     gene            complement(13498..14709)
                     /locus_tag="PF788_000222"
     CDS             complement(13498..14709)
                     /locus_tag="PF788_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6302515.1"
                     /translation="MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQ
                     AFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDG
                     SLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLG
                     MLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIA
                     KEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRL
                     MDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKV
                     SPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLI
                     HGRHVTRNAMN"
     gene            complement(14702..15142)
                     /locus_tag="PF788_000223"
     CDS             complement(14702..15142)
                     /locus_tag="PF788_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding protein"
                     /protein_id="HDG6302516.1"
                     /translation="MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKH
                     QPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEI
                     VCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLREAHND"
     gene            15304..16068
                     /locus_tag="PF788_000224"
     CDS             15304..16068
                     /locus_tag="PF788_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDG6302517.1"
                     /translation="MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGY
                     INENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKN
                     KLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKK
                     LQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIE
                     DGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV"
     gene            complement(16060..16311)
                     /locus_tag="PF788_000225"
     CDS             complement(16060..16311)
                     /locus_tag="PF788_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302518.1"
                     /translation="MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILS
                     IFFILIKSSRLNNILTILSIVLVIIHMGILAHSTYVYLY"
     gene            16700..17965
                     /gene="femX"
                     /locus_tag="PF788_000226"
                     /gene_synonym="fmhB"
     CDS             16700..17965
                     /gene="femX"
                     /locus_tag="PF788_000226"
                     /gene_synonym="fmhB"
                     /EC_number="2.3.2.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II:glycine glycyltransferase"
                     /protein_id="HDG6302519.1"
                     /translation="MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIA
                     VGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKA
                     YAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELL
                     NSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYD
                     ALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMKTSEKQAKKAQNMIND
                     AQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNH
                     HMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVL
                     NQPLYQLIEQVKPRLTKAKIKISRKLKRK"
     gene            18082..21249
                     /locus_tag="PF788_000227"
     CDS             18082..21249
                     /locus_tag="PF788_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDG6302520.1"
                     /translation="MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQN
                     PVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTD
                     MDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQ
                     LIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGL
                     FQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASP
                     QQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQ
                     VAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLR
                     NIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYR
                     RLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAI
                     AFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWI
                     VIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKY
                     LKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKH
                     PGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTY
                     DQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWS
                     EDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTT
                     RQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLA
                     PFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQ
                     GMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISS
                     TLLTLVVVPVIYEILFTLKKRFTKR"
     gene            complement(21436..21753)
                     /gene="mspA"
                     /locus_tag="PF788_000228"
     CDS             complement(21436..21753)
                     /gene="mspA"
                     /locus_tag="PF788_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane stabilizing protein MspA"
                     /protein_id="HDG6302521.1"
                     /translation="MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLA
                     LTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTI
                     VLF"
     gene            complement(21998..22162)
                     /locus_tag="PF788_000229"
     CDS             complement(21998..22162)
                     /locus_tag="PF788_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302522.1"
                     /translation="MSLENQLAELKYDYVRLQGDIEKRESLNLDTSALVRQLKDIENE
                     IRNVRAQMQD"
     gene            22295..23203
                     /locus_tag="PF788_000230"
     CDS             22295..23203
                     /locus_tag="PF788_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006190865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDG6302523.1"
                     /translation="MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSL
                     VIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGL
                     FAYPLIEVIWPKTGLIYFVMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQ
                     SVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPA
                     TIKYLCLHYGLALVAGLLVYVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTL
                     TFIGMTTNLTIIISIIILYVYQAVFV"
     gene            23374..23505
                     /locus_tag="PF788_000231"
     CDS             23374..23505
                     /locus_tag="PF788_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302524.1"
                     /translation="MYGAYLIYEYHQDFKSIANFKVLKRMINVMMCYCVLFLEPRIS"
     gene            complement(23622..24485)
                     /locus_tag="PF788_000232"
     CDS             complement(23622..24485)
                     /locus_tag="PF788_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake protein GlcU"
                     /protein_id="HDG6302525.1"
                     /translation="MQFLDFLIALLPALFWGSVVLINVFVGGGPYNQIRGTTLGALIV
                     GLGLLITGFAKFNNPTVIIVGLISGALWAFGQANQLKSISLIGVSNTMPVSTGMQLVG
                     TTLFSVIFLGEWSSMTQIIFGLIAMILLVTGVALTSLKAKNERQSDNPEFKKAMGILI
                     VSTVGYVGFVVLGDIFGVGGTDALFFQSVGMAIGGFILSMNHKTSLKSTALNLLPGVI
                     WGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGGIFILGERKDRRQMTGIWAGIIII
                     VIAAIILGNLK"
     gene            complement(24666..25553)
                     /locus_tag="PF788_000233"
     CDS             complement(24666..25553)
                     /locus_tag="PF788_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6302526.1"
                     /translation="MSIVQLYDITQIKSFIEHSNYESASYLYKLPQQYNEIDVLITDA
                     IESPGVFSIKENDSIKAIILSFAYDKNKFKVIGPFVADNYVLSVDTFETLFKAMTSNQ
                     PDDAVFNFSFEEGIQQYKPLMKVIQASYNFTDYYIEARTRLEEDMHQPNIIPYHKGFY
                     RAFSKLHTTTFKYQAQSPQDIIDSLDDHHHLFLFVSEGLLKGYLYLEIDSQQSIAEIK
                     YFSSHVDYRLKGIAFELLAYALQYAFDNFDIRKVYFKIRNKNNKLIERFNGLGFHINY
                     EYIKFKFESRNVKDQTIPE"
     gene            25619..25714
                     /locus_tag="PF788_000234"
     CDS             25619..25714
                     /locus_tag="PF788_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302527.1"
                     /translation="MILTCYNTFNTSFAIIEFKSKISGIDEARSK"
     gene            25740..27875
                     /locus_tag="PF788_000235"
     CDS             25740..27875
                     /locus_tag="PF788_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDG6302528.1"
                     /translation="MKSLILAEKPSVARDIADALQINQKRNGYFENNQYIVTWALGHL
                     VTNATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVKDIIIA
                     TDAGREGELVARLILDKVGNKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAAL
                     ARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSL
                     TVKGFDFQLESNQRYTNKETLEQMVNNLKNVDGKIKSVATKHKKSYPQSLYNLTDLQQ
                     DMYRRYKIGPKETLNTLQSLYERHKVVTYPRTDSNYLTTDMVDTMKERIQATMATTYK
                     DQARPLMSKTFSSKMSIFNNQKVSDHHAIIPTEVRPVMSDLSNRELKLYDMIVERFLE
                     ALMPPHEYDAITVTLEVAGHTFVLKENVTTVLGFKSIRQGESITEMQQPFSEGDEVKI
                     SKTNIREHETTPPEYFNEGSLLKAMENPQNFIQLKDKKYAQTLKQTGGIGTVATRADI
                     IDKLFNMNAIESRDGKIKVTSKGKQILELAPEELTSPLLTAQWEEKLLLIERGKYQAK
                     TFINEMKDFTKDVVNGIKNSDRKYKHDNLTTTECPTCGKFMIKVKTKNGQMLVCQDPS
                     CKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAHMDQRMKSKSSGKV
                     SRKEMKKYMNKNEGLDNNPFKDALKNLNL"
     gene            27988..29322
                     /locus_tag="PF788_000236"
     CDS             27988..29322
                     /locus_tag="PF788_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000800694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDG6302529.1"
                     /translation="MKNYFQFDKYGTNFKREILGGITTFLSMAYILAVNPQVLSLAGV
                     KGVSEDMKMDQGAIFVATALAAFVGSLFMGLIAKYPIALAPGMGLNAFFAFTVVLTMG
                     IPWQVGLTGVLFSGIFFAILTVTGFREVIINAIPYQMKMAVSAGIGLFITFVGLQSSG
                     IIVKNESTLVTLGHLTDPPVLLAIFGIVITVILYAIKLPGSIFIGMIITAIVGMFTGL
                     IQMPSGIVGKIPSIEPTFGAAFEAFKDPSQLLTIQFLIVILTFLFIDFFDTAGTLVAV
                     ATQAGIMKDNKLPRAGRALFSDSLATIVGSVFGTTTTTSYIESTSGVAVGARTGFASI
                     VTGCCFLLALFFSPLIAVVTSAVTTPALVVVGVLMAANFAEINWKSFEVAVPAFITII
                     MMPLSYSIATGIACGFIFYPITMLISKKHKEVHPIMYVLMVLFILYFIFVHG"
     gene            complement(29514..29903)
                     /locus_tag="PF788_000237"
     CDS             complement(29514..29903)
                     /locus_tag="PF788_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302530.1"
                     /translation="MKNGPKLSLALIGIFLILCEFFYGIPFLGATFILSFGWQPLLFN
                     ALLYLILTIILLVNRQNAIRPIAIIPIFGIVGSFLAIIPFLGILIHWILFFLMILFVL
                     VVLSAPTYIPNKNARVIYTQYKDGHRE"
     gene            30260..30568
                     /gene="rpsJ"
                     /locus_tag="PF788_000238"
     CDS             30260..30568
                     /gene="rpsJ"
                     /locus_tag="PF788_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDG6302531.1"
                     /translation="MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPT
                     EKSVYTIIRAVHKYKDSREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL
                     "
     gene            30596..31258
                     /gene="rplC"
                     /locus_tag="PF788_000239"
     CDS             30596..31258
                     /gene="rplC"
                     /locus_tag="PF788_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000160215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDG6302532.1"
                     /translation="MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVD
                     GYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVG
                     QEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDA
                     SRVFKGQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKG
                     NK"
     gene            31285..31908
                     /gene="rplD"
                     /locus_tag="PF788_000240"
     CDS             31285..31908
                     /gene="rplD"
                     /locus_tag="PF788_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDG6302533.1"
                     /translation="MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASL
                     RQGTHAVKNRSAVSGGGRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMP
                     KKMRRLALRSALSFKAQENGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENED
                     VNVELSARNIPGVQVTTAQGLNVLDITNADSLVITEAAAKKVEEVLG"
     gene            31908..32183
                     /gene="rplW"
                     /locus_tag="PF788_000241"
     CDS             31908..32183
                     /gene="rplW"
                     /locus_tag="PF788_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002506966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDG6302534.1"
                     /translation="MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEE
                     IFNVKVASVNIMNYKPKKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN"
     gene            32216..33049
                     /gene="rplB"
                     /locus_tag="PF788_000242"
     CDS             32216..33049
                     /gene="rplB"
                     /locus_tag="PF788_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDG6302535.1"
                     /translation="MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRN
                     NQGKLTVRHHGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADGEKR
                     YIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGA
                     SAQVLGKEGKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRP
                     TVRGSVMNPNDHPHGGGEGRAPIGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKK
                     K"
     gene            33116..33394
                     /gene="rpsS"
                     /locus_tag="PF788_000243"
     CDS             33116..33394
                     /gene="rpsS"
                     /locus_tag="PF788_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDG6302536.1"
                     /translation="MARSIKKGPFVDEHLMKKVEAQEGSEKKQVIKTWSRRSTIFPNF
                     IGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR"
     gene            33423..33776
                     /gene="rplV"
                     /locus_tag="PF788_000244"
     CDS             33423..33776
                     /gene="rplV"
                     /locus_tag="PF788_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000387528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDG6302537.1"
                     /translation="MEAKAVARTIRIAPRKVRLVLDLIRGKNAAEAIAILKLTNKASS
                     PVIEKVLMSALANAEHNYDMNTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRTSH
                     ITIVVSDGKEEAKEA"
     gene            33800..34453
                     /gene="rpsC"
                     /locus_tag="PF788_000245"
     CDS             33800..34453
                     /gene="rpsC"
                     /locus_tag="PF788_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDG6302538.1"
                     /translation="MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDN
                     ELKEASVSHVEIERAANRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINV
                     IEIKKVDLDARLVAENIARQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGAD
                     IARAEQYSEGTVPLHTLRADIDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK"
     gene            34456..34890
                     /gene="rplP"
                     /locus_tag="PF788_000246"
     CDS             34456..34890
                     /gene="rplP"
                     /locus_tag="PF788_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDG6302539.1"
                     /translation="MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITS
                     RQIESARIAMTRYMKRGGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRI
                     LFEVAGVSEEVAREALRLASHKLPVKTKFVKREELGGETNES"
     gene            34880..35089
                     /gene="rpmC"
                     /locus_tag="PF788_000247"
     CDS             34880..35089
                     /gene="rpmC"
                     /locus_tag="PF788_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002509269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDG6302540.1"
                     /translation="MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIR
                     TVRKTIARLKTVAREREIEQSKANQ"
     gene            35113..35376
                     /gene="rpsQ"
                     /locus_tag="PF788_000248"
     CDS             35113..35376
                     /gene="rpsQ"
                     /locus_tag="PF788_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011983253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDG6302541.1"
                     /translation="MSERNDRKVYVGKVVSDKMDKTITVLVETYKTHKLYGKRVKYSK
                     KYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEIVEESVII"
     gene            35408..35776
                     /gene="rplN"
                     /locus_tag="PF788_000249"
     CDS             35408..35776
                     /gene="rplN"
                     /locus_tag="PF788_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012727667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDG6302542.1"
                     /translation="MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVK
                     NATPGGVVKKGDVVKAVIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPV
                     ARELREGNFMKIVSLAPEVL"
     gene            35812..36129
                     /gene="rplX"
                     /locus_tag="PF788_000250"
     CDS             35812..36129
                     /gene="rplX"
                     /locus_tag="PF788_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDG6302543.1"
                     /translation="MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKH
                     QKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIK
                     SNN"
     gene            36156..36695
                     /gene="rplE"
                     /locus_tag="PF788_000251"
     CDS             36156..36695
                     /gene="rplE"
                     /locus_tag="PF788_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDG6302544.1"
                     /translation="MNRLKEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAV
                     QNSKVLDNAVEELELITGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDK
                     LISVSLPRVRDFQGVSKKAFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTA
                     NTDEEARELLANFGMPFRK"
     gene            36718..36903
                     /locus_tag="PF788_000252"
     CDS             36718..36903
                     /locus_tag="PF788_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HDG6302545.1"
                     /translation="MAKTSMVAKQQKKQKYAVREYTRCERCGRPHSVYRKFKLCRICF
                     RELAYKGQIPGVRKASW"
     gene            36935..37333
                     /gene="rpsH"
                     /locus_tag="PF788_000253"
     CDS             36935..37333
                     /gene="rpsH"
                     /locus_tag="PF788_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000178880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDG6302546.1"
                     /translation="MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEG
                     FIKNVEYVEDDKQGVLRLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLG
                     IALVSTSEGVITDKEARKRNVGGEIIAYVW"
     gene            37358..37894
                     /gene="rplF"
                     /locus_tag="PF788_000254"
     CDS             37358..37894
                     /gene="rplF"
                     /locus_tag="PF788_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDG6302547.1"
                     /translation="MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFK
                     QEENTIEVVRPSDSKEDRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKD
                     LILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGK
                     GIRYQGEYVRRKEGKTGK"
     gene            37925..38284
                     /gene="rplR"
                     /locus_tag="PF788_000255"
     CDS             37925..38284
                     /gene="rplR"
                     /locus_tag="PF788_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDG6302548.1"
                     /translation="MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQI
                     IDDNKGVTLAQASSKDSDIATTATKVELATKVGEAIAKKAADKGIKEIVFDRGGYLYH
                     GRVKALAEAARESGLEF"
     gene            38305..38805
                     /gene="rpsE"
                     /locus_tag="PF788_000256"
     CDS             38305..38805
                     /gene="rpsE"
                     /locus_tag="PF788_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDG6302549.1"
                     /translation="MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNG
                     RVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPG
                     TGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKT
                     VEELYN"
     gene            38822..39001
                     /gene="rpmD"
                     /locus_tag="PF788_000257"
     CDS             38822..39001
                     /gene="rpmD"
                     /locus_tag="PF788_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDG6302550.1"
                     /translation="MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIR
                     GQINKVKHLVTVEEK"
     gene            39018..39458
                     /gene="rplO"
                     /locus_tag="PF788_000258"
     CDS             39018..39458
                     /gene="rplO"
                     /locus_tag="PF788_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDG6302551.1"
                     /translation="MKLHELKPAEGSRKERNRVGRGVATGNGKTSGRGHKGQKARSGG
                     GVRPGFEGGQLPLFRRLPKRGFTNINRKEYAIVNLDQLNKFEDGTEVTPALLVESGVV
                     KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKGGAHEVI"
     gene            39458..40750
                     /gene="secY"
                     /locus_tag="PF788_000259"
     CDS             39458..40750
                     /gene="secY"
                     /locus_tag="PF788_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDG6302552.1"
                     /translation="MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAF
                     DNPQGSQGATELLNTFGGGALKRFSIFAMGIVPYITASIVMQLLQMDIVPKFSEWAKQ
                     GEVGRRKLNNVTRYLAISLAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAG
                     TAFLIWLGDQITQFGVGNGISIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVL
                     GLLVSLILLTVGAIYVLEAVRKIPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFA
                     MAFFLLPRTLTLFYPDKEWAQNIANAANPSSNVGMVVYIVLIILFTYFYAFVQVNPEK
                     MADNLKKQGSYVPGIRPGEQTKKYITKVLYRLTFVGSIFLAVISILPILATKFMGLPQ
                     SIQIGGTSLLIVIGVAIETMKSLEAQVSQKEYKGFGGR"
     gene            40767..41414
                     /locus_tag="PF788_000260"
     CDS             40767..41414
                     /locus_tag="PF788_000260"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDG6302553.1"
                     /translation="MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETE
                     LGKEAKSYMDRGELVPDEVTVGIVKERISEDDAKKGFLLDGFPRTIEQAEALNNIMSE
                     LDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEGICDIDGGKLYQR
                     EDDNPETVANRLSVNIKQSKPILDFYDQKGVLKNIDGSKDISDVTKDVIDILDHL"
     gene            41607..41825
                     /gene="infA"
                     /locus_tag="PF788_000261"
     CDS             41607..41825
                     /gene="infA"
                     /locus_tag="PF788_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017185218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDG6302554.1"
                     /translation="MAKQDVIELEGTVLDTLPNAMFKVELENGHEILAHVSGKIRMNY
                     IRILPGDKVTVEMSPYDLTRGRITYRYK"
     gene            41857..41970
                     /gene="rpmJ"
                     /locus_tag="PF788_000262"
     CDS             41857..41970
                     /gene="rpmJ"
                     /locus_tag="PF788_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDG6302555.1"
                     /translation="MKVRPSVKPICEKCKVIKRKGKVMVICENPKHKQRQG"
     gene            41993..42358
                     /gene="rpsM"
                     /locus_tag="PF788_000263"
     CDS             41993..42358
                     /gene="rpsM"
                     /locus_tag="PF788_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDG6302556.1"
                     /translation="MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTR
                     VKDLTDDELGRIREVVDGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKT
                     KNNARTRKGPVKTVANKKK"
     gene            42382..42771
                     /gene="rpsK"
                     /locus_tag="PF788_000264"
     CDS             42382..42771
                     /gene="rpsK"
                     /locus_tag="PF788_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016998822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDG6302557.1"
                     /translation="MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSW
                     SSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQS
                     AGLEVTAIRDVTPVPHNGCRPPKRRRV"
     gene            42846..43790
                     /locus_tag="PF788_000265"
     CDS             42846..43790
                     /locus_tag="PF788_000265"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011302606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDG6302558.1"
                     /translation="MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRIL
                     LSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVR
                     DEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLP
                     IGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMT
                     EHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQE
                     LADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED"
     gene            43807..44175
                     /gene="rplQ"
                     /locus_tag="PF788_000266"
     CDS             43807..44175
                     /gene="rplQ"
                     /locus_tag="PF788_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002450507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDG6302559.1"
                     /translation="MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVV
                     EKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTR
                     ILKQGPRRGDGAESVIIELV"
     gene            44713..45522
                     /locus_tag="PF788_000267"
     CDS             44713..45522
                     /locus_tag="PF788_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HDG6302560.1"
                     /translation="MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHN
                     GSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVK
                     YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALN
                     PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKG
                     TVYKEGTATEIFDNAEELTRIGLDLPFPIKINQMLGHQTSFLTYEGLVDQL"
     gene            45519..46379
                     /locus_tag="PF788_000268"
     CDS             45519..46379
                     /locus_tag="PF788_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HDG6302561.1"
                     /translation="MTIRFDNVSYTYQKGTPYQHQAIHDVNTEFEQGKYYAIVGQTGS
                     GKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDT
                     VEREMIFGPKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL
                     AMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKAIILISHDMNEVARYADEVIV
                     MKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQYDFEQKYQTKLKDIALTEEAFV
                     SLYKEWQHEK"
     gene            46369..47175
                     /locus_tag="PF788_000269"
     CDS             46369..47175
                     /locus_tag="PF788_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HDG6302562.1"
                     /translation="MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLT
                     YLWVFALILFIMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITI
                     ETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMI
                     MSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEE
                     LAVAMEVRGYDANVKRTSYRQLKWQLRDTISLTMIIPIAIILFVLKYSGV"
     gene            47180..47983
                     /gene="truA"
                     /locus_tag="PF788_000270"
     CDS             47180..47983
                     /gene="truA"
                     /locus_tag="PF788_000270"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDG6302563.1"
                     /translation="MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRI
                     HPSSRTDRGVHAIQQYFHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRY
                     DCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKT
                     EVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKL
                     LESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSLQND"
     gene            48223..48660
                     /gene="rplM"
                     /locus_tag="PF788_000271"
     CDS             48223..48660
                     /gene="rplM"
                     /locus_tag="PF788_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019468667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDG6302564.1"
                     /translation="MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVT
                     YTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLI
                     ENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG"
     gene            48674..49072
                     /gene="rpsI"
                     /locus_tag="PF788_000272"
     CDS             48674..49072
                     /gene="rpsI"
                     /locus_tag="PF788_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDG6302565.1"
                     /translation="MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFE
                     SLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKR
                     AGLLTRDPRMKERKKPGLKAARRSPQFSKR"
     gene            49617..>49925
                     /locus_tag="PF788_000273"
     CDS             49617..>49925
                     /locus_tag="PF788_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HDG6302566.1"
                     /translation="MRGDQRTQGEKSRKEGGKIFGSGSRAPIAISILVKDGSYNHDIY
                     YNDIGEYLTREQKLDTLMKHQSIVNLKSLNVLPDKNNDWINQRDINYENYLPMYDSKD
                     I"
BASE COUNT        17967 a         7442 c         9522 g        14994 t
ORIGIN      
        1 gctcaatgta tctctttatt aataagttat atcataatta ttttagtgca tactttatgg
       61 aagggatatc agggaatggc tttcaattaa agaagaggtt taaaaggatt acaacagaat
      121 gttatgattt tgtagaaaga tatataacaa cgttttataa aaacataata ttgttaatgg
      181 aaaatgaaat gtaaggggga tttcgagtga ctaagaaagt ttattttaac cacgatggtg
      241 gtgtagatga tttagtatct ctatttttat tattacaaat ggaaaacgtt caattgatag
      301 gggtcagtac aattggtgct gattgttatt tagagccatc tttgagcgca tcagtaaaaa
      361 ttattaatcg tttttcaaat gaagatattc aagttgcgcc atcatatgaa cgaggaaaaa
      421 atccatttcc taaagaatgg cgtatgcatg ccttttttat ggacgcattg ccaattttaa
      481 atgagccagt caaacatgtt gcttcaaatg tgagcgacaa agaagccttt gaagacatta
      541 ttcaaacttt aaagagacaa tcagaaaaag taacattatt atttacaggc ccgcttacag
      601 atttagcaaa agcactacaa aaagattcat ctatcgttca gtatatagaa aaattagttt
      661 ggatgggtgg caccttttta ccaaaaggaa atgttgaaga acctgagcat gatggttctg
      721 cagaatggaa tgcatattgg gatccagaag cggttaaaat tgtttttgat agcgatatag
      781 agattgatat ggttgcttta gaaagtacga atcaagtacc gctaacgtta gatgttagac
      841 aaagatgggc gaatgaacgc caatatacgg gcattgattt tttaggagta agttatgcag
      901 cggtaccacc attaacacac tttataacaa attctactta ctttttatgg gatgttttaa
      961 cgactgctta tattggtaac aaggacttgg ttcattcaat tgagaaaaaa gtcgatgtaa
     1021 taagttatgg accaagtcaa ggtaagacat ttgagtgtaa agatgggcgc aaaattaatg
     1081 tcataaatca tgtagataac aacgcatttt ttgattatat aactgcactt gctaaaaaag
     1141 taaattaaca gctgtgtaga ataattaagg ttttaattta tatagaacaa cttattgtaa
     1201 acttttcatt tcttaaagtt tacaatggtg ctataataat ggtcatgaaa tacgaaagga
     1261 agtaaaaaat gacaacaaaa cagttagtat atacagcttt aatgacagcg attatcgcta
     1321 ttttaggatt ggtaccggta attccactac cattttcttc agtaccaatt gtacttcaaa
     1381 acattggtat tttcttagca ggtgtgattt taggacgtaa atatggcaca ttaagtgtta
     1441 tcgtcttttt attattagta gttgctggct tgccattgtt atcaggtggt cgcggtggca
     1501 tcggtgtatt cgcaggtcct tcagcagggt ttttactatt atatccagtt gtagcattca
     1561 tgattggggc gattcgagat agattcatca atgaaattaa tttctggatt ttattcgttg
     1621 gtattttagt ttttggtgtt atagcattag atgttattgg tacattgatt atgggcatga
     1681 ttattaacat accatttacg aaagctattt caatttcatt agcttatttg cctggtgata
     1741 tattaaaagc aattgtagca agtttgattg gtacagcttt acttaatcac tcgcagtttc
     1801 gtcaaattat gggaataaaa taatcatatt taagatagta aagtaattga ataagttgct
     1861 ttgaaattta taaaagtgaa aggagtaggt gtcaatggct agtataagta tgtcagatat
     1921 atattgtaac ggcactatat ttgaaaatga cgacgagcag ttgatttatt taacgccttc
     1981 ttttccacaa cgatacacaa gtaacacatg gatatataaa aagacgccta cccaagagcg
     2041 atggctgaaa gacttagaac gtcaacatca attacataca aatcaaggtt caaatcatta
     2101 tgcgtttagt ttcccggaaa atgaacaact tgataatcat tggatggcta tgtttaaaga
     2161 tatgaatttt gaactaggta ttatggaatt gtatgccata gaaagtgatg cgcttgccaa
     2221 tttgccgcgt aactctgacg ttgaaattgc catcgttgac gagtcgcata tagatgccta
     2281 tttaaaagtt gcatatcagt ttagtttgcc atttggaaaa gactatgcag atgcacatga
     2341 agaaatggta agggaacatt atcaaaaaga tgtgattaaa cgcttagtag cttatttaaa
     2401 taatgaacct attggcgttg tagatgtcat tgaaagtgaa aattacattg aattagatgg
     2461 atttggtgta ttagaacaat ttcggcacca aggaattgga tctacaattc aatcgttgat
     2521 aggtgaatac gccatatcaa aaaatcacaa accaatcata ttagttgcag atggtgaaga
     2581 tacagcaaaa gatatgtatg caaagcaagg ttatgtctat caatcgtttt gttatcaaat
     2641 attaaaagaa gatattggaa attaacgatt gatgataggt ttgtattaga ataaaaaagc
     2701 agtaagctgg tttcgagtag aaatcaactt actgcttttt aaattgtttt gagctactta
     2761 tacttataaa aatagtgcgt ttaaattgtt gattcatgta gaatatcgtt cattatgaca
     2821 cactataatg aatatgttat tgttcagaat caatgatacg ttctggatga ctgtatatat
     2881 taaagccacc atttcgaata aatccaactg ccgtaatatt taggtcatta gctaaggtta
     2941 cagcaagcgt tgtcggagct gatttagata aaatgacgcc aacaccaatt tttgcggctt
     3001 taattaaaat ttctgatgaa atacgtccac taaaaattaa tactttatct cggacagtaa
     3061 tatgtcgctg aatacaaaat ccatataatt tatctagagc gttatgtcta ccaatgtctt
     3121 gtcgatgtac aaaaaatgtc aaaccatcgc ttatagcagc attatgtaag ccacctgttt
     3181 cttggtaaat atgacttgca ctttgtaatc gagtcatcat gttaataatt tgcattggag
     3241 ttaaagtgat tttagacata gatgttttag cgatagcagc atcattttga aaataaaact
     3301 cacgactctt tccgcaacaa gatgcaatca ttcgttttgt ggaatattga aagcgatcgc
     3361 ctaaatcttt attaagttca acatgggcaa aacctttact atcatcaatc agtacagatt
     3421 ttaattcatc tcgctttaaa atggcacctt ccgaagccag aaatccaatg actaactcct
     3481 caaggtttgt tggactgcat ataacagtcg caaattcttc accattcacc ataattgtaa
     3541 gtggaaattc tgtcacatat tgatctgttg tattgaataa ttttccatct tcatatctaa
     3601 caattggttg acctaaagat acatctttgt tcattatcta acccctttaa ttagcttaaa
     3661 ctttatttta aagcaatttg cttaaaattt taacatattt gcttaagttt gaaatttgat
     3721 tgataaaaat taatagcgag caatctgttt gatttaaatt gaattcgaga atatacatac
     3781 tagggcatca attaataaat atcaatctta tgcaaatttg acaattgttt gaatcaatat
     3841 ataaacaggc aacggttctt ttcaaatata atagtaagtg tataatgaaa atgtaaatat
     3901 tattaaaaat gggggttcac tcaatgaaat tgaaacgttt atttgctgtt gtgattgcaa
     3961 tgcttttagt attagctggt tgctctaatt ctaacgataa taatgaaagt aaaaaagatg
     4021 acgcagacaa tggtaagaaa caagagattc aagttgcagc ggcagcaagt ttaacagatg
     4081 taaccaagaa attagcttca gaatttaaaa aagagcataa aaatgctgat attaaattta
     4141 actatggtgg atcaggggca ttaagaaaac aaattgaatc aggcgcacct gttgacgtat
     4201 ttatgtctgc aaatactaaa gatgtagatg cattaaaaga caagaataaa gcgcatgata
     4261 catataaata tgcgaaaaat agtctagtat taattggtga taaagattca aattacactt
     4321 cagtaaaaga cttaaaagac aatgataaat tagcattagg tgaagtgaaa actgtaccag
     4381 caggaaaata tgcgaaacag tatttagata acaataactt atttaaagaa gtcgaaagta
     4441 aaatcgttta tgctaaagat gtaaaacaag tattaaatta tgttgaaaag ggtaatgcga
     4501 aacaaggttt tgtgtataaa actgacttat ataaacaaaa taaaaaaatt gatactgtaa
     4561 aagtaattaa agaagtagaa cttaagaagc caatcacata cgaagctggt gctacatcag
     4621 atagtaaatt agcaaaagag tggatggaat tcttaaaatc agataaagct aaagaaatac
     4681 taaaagaata ccactttgca gcataaggag ttgtaatcca tgcctgactt aacacctttt
     4741 tggatatcaa tacgagttgc tgtaatcagt acgattattg taacggtttt aggtattttt
     4801 atatctaaat ggttgtatcg tcgtaagggt tcgtgggtta aattattgga aagtttattg
     4861 atattaccta ttgttttgcc gccaacggta ttaggtttta ttctattaat catcttctcg
     4921 ccaagaggac caatcggtca attctttgcg aatgtactac atttacctgt agtgttcact
     4981 ttgacaggtg ctgtgatagc atctgtcatt gttagttttc cactaatgta tcaacatact
     5041 gtgcaaggct tcagaggtat agacacgaaa atgattaata cagctagaac gatgggagca
     5101 agtgaaacga aaattttcct caaattaatt ttaccattag ctaaacgctc tattttagca
     5161 ggtataatga tgagttttgc tcgtgcatta ggtgagtttg gtgctacatt aatggttgca
     5221 ggatatattc caaataaaac gaatacacta cctttagaaa tatacttctt agtggaacaa
     5281 ggtagagaaa atgaagcgtg gttatgggta ttagtgctag tcgcattctc tattgtggtt
     5341 atatctacaa ttaatttatt gaataaagat aaatataagg aggtcgacta gatgcttaaa
     5401 atcaatgtga aatatcaatt aaagaacact ttaattcgca tcaatataga tgatactgaa
     5461 ccaaaaattt atgcagttcg tggtccatct ggcattggta aaactactgt tttaaatatg
     5521 attgccggat tacgtaaagc agatgaagct attatcgaag tgaatgggca attacttact
     5581 gatacggcaa aaaacgtgaa tgttaaaatt caacaacgac gtattggata tctgtttcaa
     5641 gactaccaat tgtttcctaa tatgacggtc tataaaaata ttacttttat ggctgaacca
     5701 tctgaacaca tcgatcaatt aattcaaact ttaaacattg atcatttgat gaaacaatat
     5761 cctatgacat tgtcaggtgg agaggcacaa cgtgtagcac ttgcacgtgc acttagcacg
     5821 aaaccagatt taattttatt agatgaacct ttttctagtt tggatgatac tacaaaagat
     5881 gagagtatta cattagttaa acgtattttc aacgaatggc aaataccaat catatttgtg
     5941 acacattcaa actatgaagc agaacaaatg gctcatgaaa ttattacaat tgggtaatca
     6001 tttatttgcc attaaagagt ttagaacgta tttaaaattg tagaagtgaa tgcttctatc
     6061 agcattttaa tgatgtttta aactcttttt taggggcagt ttttttgaga gacattgacg
     6121 cgcgtcatat aatgaaagta atgataaaaa gaaaggataa cttaatgtga gtcaagaacg
     6181 ttattcaagg caaattttat ttaaacaaat aggtgaaata ggtcaaagca aaataaatca
     6241 aaaatgtgcg ttgattattg gtatgggcgc attaggtaca catgtggccg aaggacttgt
     6301 tagagcaggc attgccaaac taatcattgt tgatagagat tatattgaat ttagtaattt
     6361 acaaagacaa acattgttta ctgaagaaga tgctttgaaa atgatgccta aggtggttgc
     6421 agctaaaaag catttgctag cgttacgtag tgatgttgat attgatgatt atattgccca
     6481 tgtggattat tattttttgg aaacacatgg acaggacgtt gacgttatta ttgatgcaac
     6541 cgataacttt gaaacacgac aactgattaa tgattttgca tataaatatc gtataccttg
     6601 gatttatggt ggtgttgtac agagtacata tacagaagct gcatttatac ctggtaaaac
     6661 accttgcttt aactgtttgg taccacaatt gccagcatta aatttaacat gtgatacagt
     6721 aggggtcatt caacctgccg tgacgatggc aacaagttta caattaagag atgcgatgaa
     6781 agtattaacg gaacaaccaa ttgacacaaa aataacttat ggcgatattt gggaaggtag
     6841 tcattattca tttggtttca gtaaaatgca acgttcagac tgtacaactt gtggagatgt
     6901 accaagttat ccgtatttaa acaagaatga acaacgttat gcaacattgt gtggtagaga
     6961 cactgtacag tatgaaaatg catcaattac acacgacatt cttgttcaat ttttaaaaca
     7021 acatcagtta aattatcgca gtaattcgta tatggttatg tttgaattta aaggacaccg
     7081 cattgttgct tttaaaggtg gaaggttttt aatacatggc atgacacgca catcagatgc
     7141 cacacatcta atgaatttat tgtttggata aaaaaagata agacaaaagg agtgtaatat
     7201 tatgggcgaa catcaaaacg ttaaattgaa tcgtacagtt aaagcagccg tactaacggt
     7261 atcagatact agagactttg atacagataa aggtggtcaa tgcgtgcgcc aactattaca
     7321 agcagatgac gttgaagtga gtgacgcaca ttatacaatt gtgaaagatg aaaaagtagc
     7381 catcacgacg caggtgaaga agtggttaga agaagatatt gatgtcatca ttacgactgg
     7441 tggaacaggt attgcacaac gtgatgtgac gattgaagca gtaaaaccac ttttaactaa
     7501 agagatagat ggctttgggg aattgtttag atatttgagt tatgttgaag atgttggcac
     7561 gcgtgcatta ttgtctcgtg ctgtagcagg tacagttaat aataaattga tattttcgat
     7621 tccaggatca acaggcgcag ttaaattagc attagaaaag ctcattaaac cagaattaaa
     7681 tcatctgatt catgagctta caaaataatt tattgatttg attggcgttg aaaatctcca
     7741 gatttaccgc cagacttgct ttcaaggtag gtttcgccaa taatcatacc tttatcaact
     7801 gctttcgtca tgtcgtaaat ggttaaagcc gttgctgatg cagcggttaa agcttccatt
     7861 tcaacaccgg ttttgccagt tgtagagaca gttgtttgaa tgtttaaagt ataaaggggt
     7921 gcatttgttt catcccagct gaagtgaaca tctatgccag tcaatggtaa tggatggcac
     7981 atcggaataa gtgttgatgt atttttggca gccataatac cagcgatttg agcagtgttc
     8041 aatacattgc ctttggtatt ggtgttatta gaaatctgct taaaaatagt ttcatttaca
     8101 gtaatgcttg aatgagcgac agcagttctt tttgtaattt gtttgtctga tacatcgacc
     8161 attttggcgt ggccttgttg attaatatga gtaaactcag tcattttacc cctcctagtg
     8221 catctagtat atcatgaaaa aataaaagtt ttggagatga tttttaatgg tagtagaaaa
     8281 aagaaaccca atcccagtta aagaagcaat tcaacgtatc gttaatcagc agagttcaat
     8341 gccggcaatt acggtagcac ttgaaaaaag tctaaatcat atcttagcag aagatattgt
     8401 agctacttat gatataccaa ggtttgataa atcaccttat gatggttttg caattcgcag
     8461 tgttgattca caaggggcaa gtggtcagaa tcgcattgag tttaaagtga ttgatcatat
     8521 tggtgcaggt tcagtttctg ataaattagt tggggatcac gaagcggtgc gtattatgac
     8581 tggagcacaa atacctaatg gcgcagatgc tgttgttatg tttgaacaaa cgattgaact
     8641 agaagataca tttacaattc gtaaaccatt ttcaaaaaat gaaaatatat ctttaaaagg
     8701 tgaagaaaca aagacaggcg atgttgttct aaaaaaagga caagtaatta atccaggggc
     8761 tatcgcggtc cttgcaacat atggctatgc agaggttaaa gttattaagc aaccgagtgt
     8821 cgctgttatt gcaacaggaa gcgaattatt agatgttaat gatgtattag aagatggaaa
     8881 aattcgtaac tctaatggcc caatgattcg tgccttagca gaaaaattag gtcttgaagt
     8941 tggtatttac aaaacacaaa aagatgattt agatagtggc atccaagtcg ttaaagaagc
     9001 tatggaaaaa catgatatcg ttattacaac gggcggagtt tctgttggag attttgacta
     9061 tttacctgag atttataagg ctgtaaaggc ggaagtgtta tttaataaag tagcaatgcg
     9121 tcctggtagc gtaacaacgg ttgcatttgt agatggaaag tatttgtttg gattatctgg
     9181 aaatccatca gcttgtttta caggatttga actatttgtg aaaccagctg ttaaacatat
     9241 gtgtggcgca ctagaagtct tcccgcaaat aattaaagca acattaatgg aagattttac
     9301 caaggcaaac ccattcacac gatttatacg tgctaaagca acgttaacaa gtgctggagc
     9361 tactgtagta ccttcaggat tcaataaatc aggtgcggtt gtagcgattg cacatgctaa
     9421 ctgtatggtc atgttaccag gagggtcacg tggttttaaa gcggggcata cagtagatat
     9481 tatattgact gaatctgacg ctgctgaaga ggaacttctt ttatgatttt acaaattgta
     9541 ggttacaaaa agtctggtaa gacaacattg atgaggcata ttgtctcttt cttaaagtca
     9601 catggttata cagttgctac tattaaacat catgggcatg gtaaggaaga tattcaatta
     9661 caggattcag acgtcgatca catgaagcat tttgaagcgg gggcagatca aagtattgta
     9721 caaggttttc aatatcagca aactgtaaca cgtgtagata atcaaaatct tactcaaatt
     9781 attgaaaaat ctgttacaat tgacaccaat atcgtattag ttgaaggctt taaaaatgct
     9841 gattttgaaa aagtcgtagt ctatcgaaat gaagaagagt tgcaagtatt acaacaattg
     9901 tcgaatgttt gttatagcat taatgtaagg gagcatgaag attttacagc atttgagcaa
     9961 tggttattaa ataaaattaa aaatgattgt gatacacaat taacatagag gattgaaatg
    10021 aatgaaacaa tttgaaatcg tgacagaacc gatacaaaca gaacaatatc gtgaattcac
    10081 tataaatgaa tatcaaggtg cagtagttgt ttttaccggt catgttcgcg aatggactaa
    10141 aggcgtcaaa acggaatatt tagaatatga agcgtatatt ccaatggctg aaaagaaatt
    10201 ggcacaaatt ggagatgaaa taaatgaaaa atggcctgga acgataacga gtattgttca
    10261 tagaataggg ccattacaaa tttcagatat cgctgtatta attgcggttt cttcaccgca
    10321 tcgtaaagat gcctatcgag caaatgaata tgcaattgag cgtataaaag aaattgttcc
    10381 gatttggaaa aaagaaattt gggaagatgg ttcaaaatgg caagggcatc aaaaagggaa
    10441 ttatgaagaa gcgaagaggg aggaataaga gagatgaagg tactttactt cgcagaaatt
    10501 aaagatatat tacaaaaagc acaggaagat attgtgcttg aacaagcatt gactgtacaa
    10561 caatttgaag atttattgtt tgaacgttat ccgcaaatca ataataaaaa gtttcaagtt
    10621 gctgtaaatg aggaatttgt acaaaaatcg gatttcattc aacctaatga tactgttgca
    10681 ttaattccac cggttagtgg aggttaaggg agcatgaaag caataattct tgcaggtggt
    10741 cattcagtgc gatttggtaa gcccaaagct tttgcggaag tgaacggtga gaccttttat
    10801 agtagagtaa ttaagacatt agaatcaaca aatatgttca atgaaattat tattagtaca
    10861 aatgcgcaat tggcaacgca atttaaatat ccaaatgttg ttatagatga tgagaatcat
    10921 aatgataaag gtccattagc aggaatttat acaatcatga agcaacatcc tgaagaagaa
    10981 ttgttttttg tcgtttctgt tgatacacca atgattactg gtaaagctgt aagcacgttg
    11041 tatcagtttt tagtttctca tcttattgaa aatcatttag atgtcgcagc ttttaaagaa
    11101 gatggacgtt ttattccaac aattgcattt tatagtccga atgcattagg cgctataact
    11161 aaagcactac attctgataa ttacagtttt aaaaatgtat atcatgaatt atcaacggat
    11221 tatttggatg taagggatgt agatgcgccc tcatattggt acaaaaatat aaattatcag
    11281 catgatttgg acgctttaat tcaaaaattg taagctgtta ggaggtccac aaatggtaga
    11341 acaaataaaa gataaactag gacgtcccat ccgtgactta cggttatctg tgacagatcg
    11401 gtgtaacttt aggtgtgatt attgcatgcc taaagaggta tttggagatg atttcgtatt
    11461 tttacctaaa aatgaacttt taacgtttga tgaaatggct agaatcgcta aggtatatgc
    11521 agaattaggt gtaaaaaaaa tacgcattac aggtggagaa ccattgatgc gacgggattt
    11581 agatgtactt atagctaaat taaatcaaat cgatggtatt gaagatattg gtttgactac
    11641 aaatggtttg ttattaaaaa agcatggaca aaagttatat gatgctgggc tgcgcagaat
    11701 taatgtcagt ttggatgcta ttgatgatac gctatttcaa tcaatcaata atcgtaatat
    11761 taaagcgact acgattttag aacaaattga ttacgcgacg tctattggtt tgaatgtaaa
    11821 agtaaatgtt gttatacaaa aaggtattaa cgatgatcaa atcataccaa tgcttgaata
    11881 ttttaaagat aaacatatag agattcgatt tatagaattt atggatgttg gtaatgataa
    11941 tggatgggat ttcagtaaag ttgtaactaa agatgaaatg cttacaatga tagagcagca
    12001 ctttgaaatc gatcctgtag aaccaaaata ttttggggaa gtagcaaaat attatcgcca
    12061 taaggataat ggtgttcaat ttggtttgat tacaagtgtt tcacaatcat tttgttctac
    12121 atgtacacgc gcaaggctgt catcagatgg gaagttttac ggatgtttat ttgcaactgt
    12181 cgatggattt aacgttaaag cgtttattcg ttctggcgtg accgacgaag aattaaaaga
    12241 acaatttaaa gctttatggc aaataagaga tgatcgatat tcagatgaga gaactgctca
    12301 aacagttgcc aatcgtcaac gtaaaaagat aaacatgaat tatattggtg gttaatgtgt
    12361 agggaccact acatattaaa tcattagaga tgttttaata tttctgtctt actccctaaa
    12421 atacaatatt atttattaaa gtaaaaacgg tcatatctat gccagattta atagaaatga
    12481 tcgtttttaa agtttttaca agttggcggg gccccaacac agaagctgac agaaagtcag
    12541 cttacaataa tgtgcaagtt ggcggggccc caacatagag aatttcaaaa agaaattcta
    12601 cagacaatgc aagttgggga acggggcccc aacacagaag gtgacgaaaa gtcagcatac
    12661 aataatgtgc aagttggcgg ggccccaaca tagagaattt caaaagaaat tctacagaca
    12721 atgcaagttg gggatcaacg aaataaattt tatgagaata tcatttctat cccactctta
    12781 agaatcacta cataataaat ctttagtggt tctttaacat tgatgtcaca ctccatgcca
    12841 ttgagttgta atatatcttt tttaggtata aatgttgtcg aataaacaac aagttgtcca
    12901 aaagatataa atctaaacaa gatatagcca gcaatttaat atttgtaata gataaaatgc
    12961 taagtttgat atataataaa tttaagtaat tgtataataa tatgaattac aaacatctaa
    13021 gaagaaacat aggaggcatc atattatgag taataaagtt caacgtttta tagaagcaga
    13081 aagggagtta agtcagttaa agcactggtt aaaaacaaca cataagattt caattgaaga
    13141 atttgtagtc ctttttaaag tgtatgaagc tgaaaagatt agcggtaaag aattgaggga
    13201 tacattacat tttgaaatgc tatgggatac aagtaaaatc gatgtgatta tccgtaaaat
    13261 ctataaaaaa gagcttattt ctaaattgcg ttctgaaacg gatgaaagac aagtattcta
    13321 tttctatagt acttctcaaa agaaattgtt agataaaatt actaaagaaa tagaagtgtt
    13381 aagcgttaca aactaaaaac ttaaaaagca tgccaatcag tacatcataa ttgcgtcttg
    13441 gggacagaca aatgatgaat agagattggc atgcttttta tttttgaata taaatattta
    13501 gttcatggca tttctagtta catgacgtcc atgaattaag aagtaaacaa gcatagtaat
    13561 gattgctaaa gcggccataa agccgaagat ttcactatat gaaaacatat gagtaaataa
    13621 cccaaggaat gatggaccga agccgacacc tgcatctaga ccaacgtaaa aagtagatgt
    13681 cgcgatacca tatttaatcg ggggtgagac ttttatcgca atagattgca ttgcagatga
    13741 taaatttcca taccctaaac ctaggcaagc accagcaagt aatattaacc agctttgata
    13801 gcttgaaatt aagcatacaa atgaaaggaa aagcatgata aatgctgggt agacaataat
    13861 attttcattt ttatcatcca tcaatctacc agcaataggt ctagtaatta acgatgctat
    13921 agcatagcaa ataaagaaat agcttgctgc agtgactagg tgtcgctcta aagcaaatgc
    13981 ttgtaaataa gttaggatgg acgcataggt aacgccaatt aaaagcataa ttacagcaac
    14041 aggaatggcc tcttttgcaa taaattgatg aatactaaat cttggtttat caatgacatt
    14101 agtttcagtt ttgttatttg ttacttcgaa atcaactttt ataaataatg agataatgag
    14161 tccgagtatg cctaatatga cacaaataat aaacagtaag tcaattgcgt attttgtaat
    14221 aagtaacatg cctagaaatg ggccaatcgc tgtacctaat actaaactta aggaaaataa
    14281 actgatgcct tcactttttc tattaacagg ggtaacgtat gccgcaatag tacctgttgc
    14341 agttgtcaca actgcagttg cgataccgtt tatgagacgt acaaagatta aaaaagctaa
    14401 agatccatca ataaaataaa gtaattgcgt gataattaaa gcaattaaac caataaataa
    14461 taatcgttta ggtccgattt gatttacaaa tttacctgta gcaaatcgac caattaaaga
    14521 cccgacaata aatagtccta caactaatcc ggctaatgaa tcggaagcgt cgaaagcttg
    14581 cttactatag ccagcaataa ctacaagtaa caaatacatg cataggtata cgataaagtt
    14641 gactaaaaag ttaattgtaa aacttttggt gaaaataggt gatttattta atgagccttg
    14701 attagtcatt gtgtgcctcc cttaataata tttcatgaat ttgattcatc acatttatgg
    14761 tttcttgcat ttgatcttgc gaaatgtttg ttttggcaac tactgcttgt tggagctttt
    14821 gtacatcaag acaaacaatc tcatataatt catgcccttt aggtgttaaa gttaaaaact
    14881 tttgtcgttt atcctctaaa ctgttttcta ctgttataag gtcattttct attagagctt
    14941 ttaaagtttt tcttgcagta ggcttttcaa ttgcacgtct atgtgaaatt tcaatgagag
    15001 tagtgggctg atgtttagcg atatcgcgta agattaacca ttggccataa tatatattgt
    15061 gtttttctaa aatcggctcg gctaatttta aataggggcg atatattgtt ataaaactat
    15121 tgaaaaattc ttgtgatagc atagtgacat ctcctaagac aaaatagtta gcttagctaa
    15181 cctttttaca acaatagtaa ttataaaacg ggagcaatta gaaatcaata tataattatt
    15241 aagagcaaaa ataattatac tttgttaaaa taagcgtaat tacatgtaaa tagggggata
    15301 ctaatgatat tgaaatttga tcacatcatt cattatatag atcagttaga tcggtttagt
    15361 tttccaggag atgttataaa attacattca ggtgggtatc atcataaata tggaacattc
    15421 aataaattag gttatatcaa tgaaaattat attgagctac tagatgtaga aaataatgaa
    15481 aagttgaaaa agatggcaaa aacgatagaa ggcggagtcg cttttgctac tcaaattgtt
    15541 caagagaagt atgagcaagg ctttaaaaat atttgtttgc gtacaaatga tatagaggca
    15601 gttaaaaata aactacaaag tgagcaggtt gaagtagtag ggccgattca aatggaaaga
    15661 gatacacata aagatggtaa ggtaaagtgg caattgcttt atataatgaa tcaggatgat
    15721 gatgaaatta agccaccatt ttttattcaa tgggaagaaa gtgattccat gcgtactaaa
    15781 aaattgcaaa aatattttca aaaacaattt tcaattgaaa ctgttattgt gaaaagtaaa
    15841 aaccgatcac aaacagtatc gaattggttg aaatggtttg atatggacat tgtagaagag
    15901 aatgaccatt acacagattt gattttaaaa aatgatgata tttattttag aattgaagat
    15961 ggtaaagttt caaaatatca ttcggttatc ataaaagacg cacaagcaac ttcaccatat
    16021 tcaattttta tcagaggtgc tatttatcgc tttgaaccat tagtataaat atacgtaagt
    16081 gctatgagcg agaatgccca tatgaataat gacaagcaca atggaaagaa tcgttaatat
    16141 attatttaat cgtgatgact taattaaaat gaaaaagatt gataatataa atgtgaaaaa
    16201 gataagtata acccgtaaac taaagtaatt cacggtgaga ggttgactca atgtcataat
    16261 gattgcaacg atgttcataa ttataaatag acttaaaata attgttctca tatcaaacac
    16321 ctcattgtta gattattgac attataacag gggtaattgt atatgaacat taatgtggtt
    16381 gcttgaggaa aaatttattc attgaagtca agttggttca ttttagaaat gaatatcgtg
    16441 ttagatgatg aaagtatatt gaagtatagg taactagttg aaaagtatta attgtacgat
    16501 aacattaaat ttaacacgaa acatagatat aaaatgattc acaattaaaa tgggtaaatt
    16561 tgaacttgct aaactattaa ttggagcatg gacatttcaa aaataagagt tcaaatctta
    16621 cacaagctct gaatcgacac tataagatac aaactgtata attaaaggta ttgttaaata
    16681 gaaggagata tcataaatca tggaaaagat gcatatcact aatcaggaac atgacgcatt
    16741 tgttaaatcc cacccaaatg gagatttatt acaattaacg aaatgggcag aaacaaagaa
    16801 attaactgga tggtacgcgc gaagaatcgc tgtaggtcgt gacggtgaag ttcagggtgt
    16861 tgcgcagtta ctttttaaaa aagtacctaa attaccttat acgctatgtt atatttcgcg
    16921 tggttttgtt gttgattata gtaataaaga agcgttaaat gcattgttag acagtgcaaa
    16981 agaaattgct aaagctgaga aagcgtatgc aattaaaatc gatcctgatg ttgaagttga
    17041 taaaggtaca gatgctttgc aaaatttgaa agcgcttggt tttaaacata aaggatttaa
    17101 agaaggttta tcaaaagact acatccaacc acgtatgact atgattacac caattgataa
    17161 aaatgatgat gagttattaa atagttttga acgccgaaat cgttcaaaag tgcgcttggc
    17221 tttaaagcga ggtacgacag tagaacgatc tgatagagaa ggtttaaaaa catttgctga
    17281 gttaatgaaa atcactgggg aacgcgatgg cttcttaacg cgtgatatta gttactttga
    17341 aaatatttat gatgcgttgc atgaagatgg agatgctgaa ctatttttag taaagttgga
    17401 tccaaaagaa aatatagcga aagtaaatca agaattgaat gaacttcatg ccgaaattgc
    17461 taaatggcag cagaagatga aaacatctga aaagcaagct aaaaaagcgc aaaatatgat
    17521 taatgatgcg caaaataaaa ttgctaaaaa tgaagattta aaacgagacc tagaagcttt
    17581 agaaaaggaa catcctgaag gtatttatct ttctggtgca ctattaatgt ttgctggctc
    17641 aaaatcatat tacttatatg gtgcgtcttc taatgaattt agagattttt taccaaatca
    17701 tcatatgcag tatacgatga tgaagtatgc acgtgaacat ggtgcaacaa cttacgattt
    17761 cggtggtaca gataatgatc cagataaaga ctcagaacat tatggattat gggcatttaa
    17821 aaaagtgtgg ggaacatact taagtgaaaa gattggtgaa tttgattatg tattgaatca
    17881 gccattgtac caattaattg agcaagttaa accgcgttta acaaaagcta aaattaaaat
    17941 atctcgtaaa ttaaaacgaa aatagattaa cgactgaaat ctgaacgctc ataagactgt
    18001 catttgcgtt cagatttttt tacacaatat agaatggttg agtaaaatat ttttgaatat
    18061 agtgaaagag ggggaagtac tgtgataaaa aagctattac aattttcttt agggaataag
    18121 tttgctatct ttttaatggt tgttttagtt gtcttgggcg gtgtatatgc gagtgctaaa
    18181 ttgaaattag aattactacc aaatgtacaa aatccagtta tttcagttac aacaacaatg
    18241 ccgggtgcaa cgccacaaag tacccaagat gaaataagta gtaaaattga caatcaagta
    18301 agatcattgg catatgtgaa aaatgttaaa acgcaatcca tacaaaatgc ttcaattgta
    18361 acagttgaat atgaaaataa tacagatatg gataaagcag aagaacagct taaaaaagaa
    18421 atcgataaaa ttaaatttaa agatgaagtt ggtcaaccag aattaagacg taattcgatg
    18481 gatgcttttc cggttttagc atattcattt tcaaataaag agaatgactt gaaaaaagta
    18541 acgaaagtac tgaatgaaca attaatacca aaattgcaaa cggtagatgg tgtgcaaaat
    18601 gcgcaattaa atgggcagac gaaccgtgaa atcaccctta aatttaagca aaatgaactt
    18661 gaaaaatatg ggttgactgc tgatgatgta gaaaactatc taaaaacggc aacaagaaca
    18721 acgccacttg gattgttcca atttggtgat aaagataaat caattgttgt tgatggtcaa
    18781 tatcaatctg ttgatgcttt taaaaacata aatattccat taacgttggc aggaggacaa
    18841 gggcaatctc aatcccaaag tgacaataaa caaaattcag ccatgtcaga cgttaatcag
    18901 gcatcaccac agcaaaattc aaaagcgtca gcaccaaata atataagtgg tatgccgaca
    18961 gcgaaactag gagatttagc tgatattaca gttggtgatg tgcgtacttc tatttctaaa
    19021 acgaatggaa aggatgcggt taatctacaa ataactaaag ctcaagatgc caatacagtt
    19081 caagtagcca aagatgtaca acgtaaaatt gatacattcg ttgatgaaaa taaagatttt
    19141 aatgtcacaa aaacaatgga tactgcaaag cctgttgaga aatcacttta tacgatggtt
    19201 gaaaaagcat cattaggtac aatcgtggca attatagtta ttttgctgtt tttaagaaac
    19261 attcgtacga cggcaatttc tattatatcg attccgttat cacttcttat ggcgcttatt
    19321 gctctgaaat tgagtgatgt ttcattgaat atactaacgt taggtgcatt aacagtagcg
    19381 attggacgtg tgatagacga ttcgattgta gttgttgaaa atatttatcg acgcttaaca
    19441 gattcagaag aacaactaaa aggtgaaaat ttaattatca gtgcgacaac tgaagtattt
    19501 aaaccaataa tgtcatcgac actagttact attatcgtct tcttaccact tgtgtttgta
    19561 tcaggttcag taggcgaaat gtttagacct tttgcattgg ctattgcatt tagtttatta
    19621 gcatcgttat tagtgtcaat tacactcgtt ccagcgttgg cagctacact atttaaaaaa
    19681 ggcgttaaac gtcgtaataa acaacatcaa gaaggattag gtgttgttag tacaacttat
    19741 aaaaaagtat tacattggtc attaaatcat aagtggattg taattatatt aagtacatta
    19801 attttggttg caactattgt atttggagga ccgagactag gcactagctt tatttcagca
    19861 ggtgacgata aatttttagc tattacttat acaccgaagc ctggtgaaac ggagcaagca
    19921 gtgttgaatc atgcgaaaga tgttgaaaaa tatttaaaac agaaaaagca tgtaaaaaca
    19981 attcaatact cagttggcgg tagtagtcca gtagatccaa cgggtagtac aaatagtatg
    20041 gcaatcatgg ttgaatatga taatgacacg cctaattttg atgtagaagc ggataaggtt
    20101 attaaacatg cagatggctt taaacatcct ggagagtgga aaaatcaaga tttaggaaca
    20161 ggtgcaggta ataaatctgt agaggttact gtaaaaggtc catcaatgga tgccataaaa
    20221 tcaactgtaa aagatattga acagaaaatg aaacaggtta aaggactagc caatgtcaaa
    20281 tctgatttat cgcaaacata tgatcagtat gaaattaaag tcgatcaaaa taaagcggca
    20341 gaaaatggta tttctgcaag tcaacttgca atgcacttga atgaaaactt accagaaaaa
    20401 acagttacga ctgttaaaga aaatggtaaa actgttgatg ttaaagtcaa acaaaataag
    20461 caaacagact ggtcagaaga taagttgaat aatataactt tgaaaaagcc gactggtggt
    20521 acgattaaat tgggagatat cgctacgtta gttaaaacaa cgacaccaag taaattgacg
    20581 caagaacaag gagattatgc aacgacggta tctgctaaag taacaaataa agatgtgggt
    20641 ggcacaacac gacaagtgat gtctaaaata aataatttgg acaaaccgaa taatgtaaag
    20701 gttaatatcg gtggtgcatc agatgatatt aacaatgcaa tgacacaatt agcctttgca
    20761 atgttagctg caatcattat cgtatattta atcctagtta ttacatttaa aggtggccta
    20821 gcaccattta caattttatt ctctttacca tttacagtta tcggtgtaat tattgcacta
    20881 ttaatcacag gagaaacaat atcagtacca agtttaattg gtatgctaat gttaattgga
    20941 atcgtagtaa caaatgccat tgtgttaata gaccgtgtta ttaataatga gcaacagggc
    21001 atggagatga aagaagcatt aatcgaagca ggcggtacta gaattagacc gatattaatg
    21061 acggcgattg caacaattgg tgcattagtt cctttgttat ttggtcaaga tagctcgatt
    21121 cttatttcga aaggattagc tgctacagtt attggtggtt taatttcatc aactttatta
    21181 acacttgtag ttgtaccagt aatatatgaa attctcttta ctttaaaaaa acgattcact
    21241 aaacgataga taatataaaa gccataaaag cggtcatgat attgactact tttatggctt
    21301 tttaaaattt gaaattttag accttatttc acgtgcgatt taatcgatgt gttaataaaa
    21361 caatactggc attcaacatg taatccgata ataaaataag gttgcaatta tgttattgca
    21421 tattttgttt attacttaga ataatacgat ggttaagatg aaatatatga caaagataaa
    21481 taatgacatt aaattcaaga tgtttacgcc ttttagatct tttttaagca ttttaaatcc
    21541 tgtcacttcg acattaccga ctaagagtaa taagacgata aatacccacc aattctcttt
    21601 tggaaaactc atcgtcgtta atgctaagac gaataataac aacacaccca taataattct
    21661 caaaatgcga gtaaatacaa cttccatttt aaaaatacta ataaaactaa caattagata
    21721 aagtattgct agtaaaatca gataaaattg catatgataa cttcctctcc gtttcaaagg
    21781 gttcatgtag tacagcagcg tagaaaacat aaatagcagt gttgggatag atatgcgtgt
    21841 atgttgttaa tgaaacacta aatcataaca cgacaacatc ttgtgattct agatgtaatt
    21901 gagcgaaaaa tgaagcaatt catcaatata acgtattcag agcaatgcta gtcaaattta
    21961 tgtaacaaaa agcatttatt gcttgaatga tagattatta atcttgcatt tgagcacgaa
    22021 cgtttctaat ttcattttca atatctttaa gttgacgaac aagtgcggaa gtatctaaat
    22081 tcaaagattc ccgtttttct atgtcacctt gaagacgaac ataatcatat ttaagttcgg
    22141 ctagttggtt ttctaaagac atactataac actcctttga aatataatta agtgcattta
    22201 atgtagatta tagcatgaaa cagtagactt ctaaaatatc tgtggagtat gttaaagtta
    22261 taaattatga agattattga aagaagggat aacagtgaca gaacaattta ctatgattat
    22321 tttattaatt gcgcttggtt actttttgaa gcgcattaat tttataaaag caacagatag
    22381 tcaagtcatt gctacattag ttcttaatgt cacactccca tctttagtta ttgtgaattt
    22441 aaacagtgca gaattaaaat tgtcattctc cattttacca attttaatga ttatatatgg
    22501 tattgtggcg aaaatgattg ctgtctggtt ttttagaaaa tatgataatc acatgcgtgg
    22561 atcagtaggt atgatgactg gtgctatgaa tattggattg tttgcatatc cactaattga
    22621 agtgatatgg cctaaaacgg gacttattta ttttgttatg gctgatatag gtggtgcctt
    22681 tgtgatgttt ggaattactt actttgtagg tagctacttt agtgaaggta gtgatcaatt
    22741 cgattttaaa tatttaggta agaaattatt acaatcagtg ccactcgtta catacattgt
    22801 aatgtttata ttgaatataa gtcacatcca tttaccacat gtggcaatcg atttctttag
    22861 catactttcc catgcaaata tgccgttatc aatgattttg ctaggtgtca tgttgaattt
    22921 tactctggaa agaaagtata tacctgctac tattaaatat ttatgtttgc attatggatt
    22981 agcattagtt gcgggattgt tagtatatgt gttgttacca gtatcagatg atatgattaa
    23041 gacgacattg ttggtcactt ggatgttccc ggtaggtgtt gcaattattt cttatggtat
    23101 tcagtttaaa tatcgaacac tgacatttat aggtatgacg accaatttga caatcattat
    23161 tagtatcatt attttgtacg tgtatcaggc agtgtttgtc tagtttacac atttgaaaat
    23221 aaaatccatt ttagtattcg tagaaaatga gagccccctt taccacaata tgtaaatgta
    23281 tattgtgaaa agggggcttt tatttatgac atagttgttc aactcataca ttcaagttga
    23341 taatgcagtg cgttatgcag ctatccactt catatgtatg gcgcatactt gatatatgaa
    23401 tatcatcaag attttaaaag tatcgctaat tttaaagtct taaaacgcat gattaatgtc
    23461 atgatgtgtt attgcgtttt gtttttagag ccacgtattt cctaggacat atagaggaac
    23521 attcaacgta aaattcccga aaattaattt taatcattct ataagtgaat ggttattttc
    23581 agaagtgatt acatttttac gttacatgag tatttaactt tctatttcaa attacctaga
    23641 attatagcag ctatcacgat aataataata cctgcccaaa tacccgtcat ctgacgacga
    23701 tcttttcttt ctcctaaaat gaaaataccg cctaaggttg aaacgataac aagtaactgt
    23761 gataatgaga aacttgtagc tacaccaact tttggttgag aatagaacat gaacaagtta
    23821 ccaattcccc aaatcacacc tggcaataga ttaagtgctg ttgatttaag tgatgtttta
    23881 tgattcatgg ataggataaa gccaccaatt gccataccga cagattggaa gaacaatgca
    23941 tcagttccac caacaccaaa gatgtcacca agtacaacga aacctacata tccaactgta
    24001 gatacaatta aaatacccat tgctttttta aattcaggat tatctgattg acgttcattt
    24061 ttagctttaa gtgaagtaag tgctacacca gtaactaata atatcatggc gattaaacca
    24121 aagataattt gagtcattga agaccattca cctaaaaaga taacgctgaa taatgttgta
    24181 ccaactaatt gcatacctgt agaaactggc atagtatttg atacaccgat taaactaata
    24241 gatttaagct gattcgcttg tccaaacgcc cataatgcac cagaaataag accgacaata
    24301 attacagtag gattattgaa ttttgcgaaa ccagtaataa gtaaacctaa tccaacaatg
    24361 agtgcgccta gcgtcgtacc acgaatttgg ttgtaaggtc caccgccgac gaacacatta
    24421 ataagaacga cacttcccca gaataaagca ggtaaaagtg cgattaagaa atcaagaaat
    24481 tgcaagacta ctcactctcc tatactattt atgcaagtgc tccccttaat tgacacttgc
    24541 atgttattgt aaagcattct gccctaatag taaaaaacaa ctacttataa ttttcaatat
    24601 ttacaaaaag tagaaaaacc cacaatacat gctaatgatg tactgtaggg tatttgcttg
    24661 gtgttttatt cagggattgt ttgatctttt acgttacgtg attcgaattt gaatttaatg
    24721 tactcatagt tgatatggaa acctagacca ttaaatcgtt cgatgagttt attattttta
    24781 ttacgaattt taaaataaac ttttctaata tcaaaattat caaaagcata ttgcaatgca
    24841 tacgcaagca actcgaaagc gatacctttc aaacggtaat ctacatgaga actgaagtat
    24901 ttaatctcgg cgattgactg ttgtgaatca atttcaaggt ataaataacc tttaagtaaa
    24961 ccttcgctaa caaataaaaa caaatgatga tggtcgtcta aactatcaat gatatcttgt
    25021 ggtgactgtg cctgatattt aaatgtagtt gtgtgtaatt tgctgaaagc acgataaaac
    25081 cctttgtgat aaggaatgat atttggttgg tgcatatctt cttctaatct tgtacgggct
    25141 tctatgtaat agtcagtgaa gttataactt gcttgaataa ctttcattaa tggtttgtat
    25201 tgttgaatgc cttcttcaaa agaaaagtta aagacggcat cgtcaggttg gttcgaagtc
    25261 attgctttaa atagcgtttc aaacgtatcg acagataata cataattgtc agccacgaaa
    25321 gggcctatga ctttgaattt atttttatcg tatgcaaaag acaatatgat tgctttgatt
    25381 gaatcgtttt ctttaatcga aaatacacca ggtgattcaa tcgcatcggt tattaataca
    25441 tctatttcat tgtactgttg aggaagttta tataagtatg atgctgattc ataattcgaa
    25501 tgttcaatga acgattttat ttgtgtaata tcatataact gaactatgct catgtcatta
    25561 cctccgtact ttttgttact tttattatat agtatttcaa ctgaaatgaa agttaatagt
    25621 gatattaaca tgttacaata catttaacac atcatttgca atcattgaat ttaaatcaaa
    25681 gattagtgga atagatgaag cacgttcgaa ataaaagaac gtatgagaaa ggataattta
    25741 tgaaatcttt aatattagct gaaaaaccat cagtcgcaag agatattgct gatgctttac
    25801 aaataaatca gaagcgtaat ggttactttg aaaataacca atatattgtc acgtgggcgt
    25861 taggtcatct agtgacaaat gcgacacctg aacaatacga taaaaattta aaggaatggc
    25921 gattagaaga ccttccaatt atacctaaat atatgaaaac tgttgttatt ggtaaaacaa
    25981 gcaaacaatt taaaacagta aaagcgttaa ttttagataa taaagtgaaa gatattatta
    26041 ttgcaacaga tgctggacga gaaggtgaac tagttgcaag attgattttg gataaagttg
    26101 gtaacaaaaa gccaatccgt cgattatgga ttagctcagt tactaaaaaa gctattcaac
    26161 aaggttttaa aaatttaaaa gacggtcgtc aatataacga tttgtattat gcagcgttag
    26221 cgagaagtga ggcagattgg attgttggga ttaatgcaac gcgtgcacta acaacaaagt
    26281 atgatgcaca gctatccctg ggacgtgttc agacaccaac gattcaatta gtaaatacac
    26341 gacaacaaga gattaatcag ttcaaaccac aacaatactt tacattatca ttaacggtaa
    26401 aagggtttga ttttcagcta gaatcaaatc agcgatatac caataaagaa actttagaac
    26461 agatggttaa taatttgaaa aatgtcgatg gtaagattaa atctgttgct actaaacata
    26521 agaagtcgta tccgcaatca ctgtacaatt taacagattt acaacaagat atgtatagac
    26581 gttataaaat tggacctaaa gaaacattga atacacttca aagcttatat gagagacata
    26641 aagtcgtaac ctatccaaga acagattcaa actatttaac aactgatatg gtagatacta
    26701 tgaaagaacg tattcaggcg acgatggcaa caacatataa agaccaagca cgcccattaa
    26761 tgtctaaaac attttcatca aaaatgtcga tatttaataa tcaaaaagta tctgatcacc
    26821 atgcaattat tcctacagaa gtgagacctg tcatgtcaga cttaagtaat agagaattaa
    26881 agttatacga tatgattgtc gagcgttttt tagaagcttt aatgcctccg cacgagtatg
    26941 acgcgataac tgtaacttta gaggttgcag ggcacacatt tgttttgaaa gagaatgtaa
    27001 caactgtttt aggttttaaa tctattagac aaggtgaatc tattacagag atgcaacagc
    27061 ctttttcaga aggcgatgaa gtgaagattt caaaaacaaa tattagagaa catgaaacaa
    27121 cacctccaga atattttaat gaaggttcgt tattaaaagc gatggagaac cctcagaact
    27181 ttattcaatt gaaggataaa aaatatgcgc aaactttaaa acaaacaggt ggtatcggca
    27241 cagttgcaac aagggccgac attatcgata aattatttaa tatgaatgcc attgaatcaa
    27301 gagacggtaa aattaaagta acgtcaaaag gtaaacaaat attagaatta gcaccagaag
    27361 aattaacgtc gccactttta actgcacaat gggaagaaaa attactttta attgaacgtg
    27421 gtaaatatca ggcgaaaaca tttattaatg aaatgaaaga ttttacgaaa gatgttgtaa
    27481 atgggattaa aaatagtgat cgtaaatata aacacgataa tttaacaacc acagaatgcc
    27541 caacgtgtgg taaattcatg attaaagtta aaactaaaaa tggtcagatg cttgtgtgcc
    27601 aagatccatc ttgtaagacg aaaaagaatg tacagcgcaa aacaaatgca agatgtccaa
    27661 actgtaaaaa gaaattaacg ttgtttggta aagggaaaga agcggtatat cgttgtgttt
    27721 gtggacattc tgaaacgcaa gcacatatgg atcagcgtat gaagtctaaa tcctctggta
    27781 aagtatctcg taaagaaatg aaaaagtata tgaataaaaa tgaaggttta gacaataatc
    27841 cgtttaaaga tgcattaaag aacttgaatt tatagataaa atcgaacaaa gttgaatcag
    27901 aaaaacgaaa agttcgcttt tggtattgtt ttttattaag aatgatatta aactattaag
    27961 gtattttaaa aaaaggagca tccattcgtg aaaaactatt tccagttcga taaatatgga
    28021 acaaacttta aaagagaaat cttaggcggt atcacaactt tcttatctat ggcctatatt
    28081 ttagcagtta acccgcaagt tttaagttta gcaggtgtta aaggcgtatc agaagatatg
    28141 aaaatggacc aaggtgccat ttttgtagcg actgcattag cagcatttgt aggctcgcta
    28201 ttcatggggc taatagctaa atatccaatt gcgttagcac caggtatggg attaaatgca
    28261 ttctttgcat ttactgttgt gttaaccatg ggtattcctt ggcaagttgg tttaacaggc
    28321 gttttattct caggtatatt ctttgcgata ttaaccgtca cagggtttag ggaagttatt
    28381 attaatgcaa ttccttatca aatgaagatg gctgtttcag caggtatagg attattcatt
    28441 acatttgtag gtttacaaag ttcgggtatt atagttaaaa atgaatctac attagtaaca
    28501 ttgggacatt taactgatcc accagtactt ttggcgatat tcggtatcgt tattacagtt
    28561 attttatatg caattaaatt gccgggttct atctttatcg gtatgatcat cacagcaatc
    28621 gttggtatgt tcactggatt gattcaaatg ccatctggta ttgtgggtaa gattccaagt
    28681 attgaaccaa cgttcggtgc tgcatttgaa gcgtttaaag acccaagtca attattaacg
    28741 atacagttct taattgttat tttaacgttc ttatttattg atttctttga tacagctggt
    28801 acattagtag ctgttgctac tcaagcaggt attatgaaag ataataaatt accaagagct
    28861 ggtagagcat tgttctcaga ttctttagct acgattgtag gatcagtttt tggaacaact
    28921 acaacaactt cttatatcga atcaacttca ggtgttgctg taggtgctag aacaggattt
    28981 gctagtatcg taacaggttg ttgtttccta ttagcgctgt tctttagtcc gttaatcgct
    29041 gttgtaacaa gtgcagttac gacaccagcc ttagtggtgg taggtgtatt aatggctgca
    29101 aactttgctg agataaactg gaaaagtttt gaagttgcag tgccagcctt cattacaatc
    29161 attatgatgc ctttatcata ttcaattgca actggtattg cgtgtggatt tattttctat
    29221 ccaattacaa tgcttatctc taaaaaacat aaagaagtac atccgataat gtatgtatta
    29281 atggtactat tcattctgta cttcatattt gttcatggtt aaatccagac acaaaaaacg
    29341 actgccaatg attggtagtc gtttttttct ttgaagtaag gataaaataa gaagcgaaat
    29401 aacataaagc gatattatga atgtctttaa atatccgata taaatatact tcttttaaaa
    29461 ttgttggacg tgtttcttct atattatata cctaattaaa aaggttttaa gaattattct
    29521 ctatgtccat ctttgtattg tgtgtaaatg acacgagcat ttttattagg tatataggtt
    29581 ggcgctgata atacaactag gacaaataga atcattagga aaaataaaat ccaatgaatc
    29641 aaaattccta agaaggggat aatagctaaa aaactaccta ctataccaaa tattggaata
    29701 atcgctatag gtctaatcgc attttgtcta ttcactaata atataatagt aagaattaga
    29761 taaagtaatg cattaaagag taaaggctgc catccaaaac ttaaaataaa cgttgcacct
    29821 aaaaaaggaa tgccatagaa aaactcacaa agtattaaaa agatacctat aagtgctaaa
    29881 gataattttg gtccattttt catattcatt caccaccgtt cttatgacta attatataga
    29941 ataattttca atgataataa taaaatgatt caaggtacga atttacaata aagaaggaaa
    30001 taaaaaatat ctcgaaaata gttgaactga ctaagtatat aaagtaaaat ataaaagtat
    30061 gtgttagaca gatagaaaaa ttatgtgaaa agccttgatt tatcgatgtt tttcgtgtaa
    30121 tataactaac gttggacttt aagaaaagcg atgaagcgaa aggttactga cacacccggc
    30181 cgctttgcca tggcgctgtg taagatagtt ttcgtggaga agtctatcac taaatgtaga
    30241 cgaataagga gggaaaatta tggcaaaaca aaaaatcaga atcagattaa aagcttatga
    30301 tcaccgcgta attgatcaat cagcagagaa gattgtagaa acagcgaaac gttctggtgc
    30361 agatgtttct ggaccaattc cgttaccaac tgagaaatca gtttacacaa tcatccgtgc
    30421 cgtgcataag tataaagatt cacgtgaaca attcgaacaa cgtacacaca aacgtttaat
    30481 cgatattgta aacccaacac caaaaacagt tgacgcttta atgggcttaa acttaccatc
    30541 tggtgtagac atcgaaatca aattataata gacaatttta ggaggtggac tttcgatgac
    30601 caaaggaatc ttaggaagaa aaattgggat gacacaagta ttcggagaaa acggtgaatt
    30661 aatccctgta acagtagtag aagctaaaga aaatgttgta ttacaaaaga aaactgtaga
    30721 agttgatgga tacaacgcaa tccaagttgg atttgaagac aaaaaagcat acaaaaaaga
    30781 tgcaaaatct aataaatatg ctaataaacc agctgaaggt cacgctaaaa aagctgacgc
    30841 agcacctaag cgcttcattc gtgaattccg caatgtagac gtggatgctt acgaagtagg
    30901 tcaagaagtc tcagtagata cttttgtagc tggcgacgtt attgacgtaa caggcgtatc
    30961 aaaaggtaaa ggtttccaag gtgcaattaa acgccacgga caatctcgtg gacctatgtc
    31021 acacggttct catttccaca gagcaccagg ttctgtaggt atggcttcag atgcttctag
    31081 agtatttaaa ggccaaaaaa tgccaggacg tatgggtgga aacactgtaa ctgttcaaaa
    31141 cttagaagta gttcaagttg acacagaaaa caaagttatc ttagtaaaag gtaacgtacc
    31201 tggacctaaa aaaggtttag tagaaatcag aacttcaatt aaaaaaggta ataaataata
    31261 agaagtgaaa ggaggaaatg cataatggct aattatgatg ttttaaaatt agacggaact
    31321 aaatcaggtt caatcgaatt aagcgatgca gtattcggta ttgagccaaa taatagcgtt
    31381 ttattcgaag ctattaattt acaacgtgct tcattacgtc aaggtacgca tgctgttaag
    31441 aatcgttcag cagtaagcgg tggcggacgt aaaccatgga agcaaaaagg aacaggtcgt
    31501 gctcgtcaag gtacaatccg tgctccacaa tggcgtggcg gtggtatcgt attcggacca
    31561 actccaagaa gttatgcata caaaatgcct aagaaaatgc gtcgtttagc tttacgctca
    31621 gcattatctt tcaaagctca agagaatggc ttaactgtag ttgacgcatt caacttcgaa
    31681 gctccaaaaa ctaaagaatt caaaaatgta ttatctacat tagaacaacc taaaaaagta
    31741 ttagtagtta ctgaaaacga agatgtaaat gttgaattat cagcacgcaa catccctggc
    31801 gttcaagtga caactgctca aggtttaaat gttttagata tcactaatgc tgacagctta
    31861 gtaattactg aagctgctgc taaaaaagtt gaggaggtgc tcggataatg gaagcaagag
    31921 atattcttaa gcgccccgta atcactgaga aatcttctga agcaatggct gaagacaaat
    31981 acactttcga cgttgatact cgtgttaaca aaacacaagt aaaaatggca gttgaagaaa
    32041 tcttcaacgt aaaagttgca agtgttaata tcatgaatta caaacctaag aaaaaacgta
    32101 tgggccgtta ccaaggctat acaaacaaaa gaagaaaagc gattgtaact cttaaagaag
    32161 gatcaatcga cttatttaac taataaaaca attaccatta aggaggtaag cgacaatggc
    32221 tattaaaaag tataagccaa taacaaatgg tcgtcgtaat atgacttcgt tagatttcgc
    32281 agaaatcacg aaaactacac ctgaaaagtc attattaaaa ccgctaccga aaaaagcggg
    32341 acgtaacaac caaggtaaat tgactgtaag acaccatggt ggtggacaca aacgtcaata
    32401 ccgtgttatc gatttcaaac gtaacaaaga tggtatcaat gcaaaagttg attctattca
    32461 atatgatcca aaccgctcag caaacatcgc tttagttgta tatgcagacg gtgaaaaacg
    32521 atatatcatt gctcctaaag gattagaagt aggtcaaatc gttgaaagtg gtgctgaagc
    32581 tgacatcaaa gttggtaacg cattaccatt acaaaacatt ccagttggta cagtagtaca
    32641 caacatcgag cttaaacctg gtaaaggtgg acaaatcgct cgttcagctg gtgcaagtgc
    32701 tcaagtactt ggtaaagaag gtaaatacgt attaatcaga ttaagatctg gtgaagttcg
    32761 tatgatctta tctacttgcc gtgctacaat cggtcaagtt ggtaacctac aacacgaatt
    32821 agttaacgtt ggtaaagccg gacgttcaag atggaaaggt atccgtccaa cagttcgtgg
    32881 ttctgtaatg aaccctaacg atcacccaca cggtggtggt gaaggtcgtg ctcctatcgg
    32941 tagaccatct ccaatgtcac catggggtaa acctacgctt ggtaagaaaa ctcgtcgtgg
    33001 taaaaaatca tcagacaaac ttatcgttcg tggacgtaag aaaaaataat ataatcaact
    33061 tatttgggtg tgcggcttaa agctgcacgc acataataag aagggaggcg cccaaatggc
    33121 tcgtagtatt aaaaaaggac ctttcgtcga tgagcattta atgaaaaaag ttgaagctca
    33181 agaaggaagc gaaaagaaac aagtaatcaa aacatggtca cgtcgttcta caattttccc
    33241 taatttcatc ggacatactt ttgcagtata cgacggacgt aaacacgtac ctgtatatgt
    33301 aactgaagat atggtaggtc ataaattagg tgagtttgct cctactcgta cattcaaagg
    33361 acacgttgca gacgacaaga aaacaagaag ataatatcta ttaagtagag gaggacatcc
    33421 taatggaagc aaaagcggtt gctagaacaa taagaatcgc acctcgtaaa gtaagactag
    33481 ttcttgactt aatcagaggt aaaaatgctg ctgaagctat tgcaatttta aaattaacaa
    33541 acaaagcttc atcaccagta attgaaaaag tattaatgtc cgctttagct aatgctgaac
    33601 ataactatga catgaacaca gatgaattag tagttaaaga agcatatgct aacgaaggac
    33661 caacattaaa acgtttccgt ccacgtgcgc aaggtcgtgc aagtgcgatt aacaaacgta
    33721 caagccacat tacaatcgtc gtaagtgacg gtaaagaaga agctaaagaa gcttaattaa
    33781 cttttaagga gggaatactg tgggtcaaaa aattaatcca atcggacttc gtgttggtat
    33841 tatccgtgat tgggaagcta aatggtatgc tgaaaaagac ttcgcttcac ttttacacga
    33901 agatttaaaa atccgtaaat ttattgataa tgaattaaaa gaagcatcag tttctcacgt
    33961 agagattgaa cgtgctgcaa accgtatcaa cattgcaatt catactggta aacctggtat
    34021 ggtaattggt aaaggcggtt cagaaatcga aaaattacgc aacaaattaa atgcgttaac
    34081 tgataaaaaa gtacacatca acgtaattga aatcaaaaaa gttgatcttg acgctcgttt
    34141 agtagctgaa aacatcgcac gtcaattaga aaaccgtgct tcattccgtc gtgtacaaaa
    34201 acaagcaatc actagagcta tgaaacttgg tgctaaaggt atcaaaactc aagtatctgg
    34261 tcgtttaggc ggagctgaca tcgctcgtgc tgaacaatat tcagaaggaa ctgttccact
    34321 tcatacgtta cgtgctgaca tcgattatgc acacgctgaa gctgacacta cttacggtaa
    34381 attaggcgtt aaagtatgga tttatcgtgg agaagttctt cctactaaga acactagtgg
    34441 aggaggaaaa taataatgtt actaccaaaa cgtgtaaaat atcgtcgtca acatcgtcct
    34501 aaaacaactg gtcgttctaa aggcggtaac tacgtaacat ttggtgagtt tggtttacaa
    34561 gctacaacaa cgtcttggat cacatctcgt caaatcgaat ctgctcgtat agcaatgaca
    34621 cgttacatga aacgtggcgg gaaagtttgg attaaaatct tcccacatac accatatact
    34681 aaaaaacctt tagaagtacg tatgggtgct ggtaaaggtg cggttgaagg ctggatcgca
    34741 gttgttaaac caggtagaat tttattcgaa gttgctggcg tttctgaaga agttgcgcgt
    34801 gaagcactac gtttagcaag tcacaaactt ccagtaaaaa ctaagtttgt aaaacgtgag
    34861 gaattgggtg gtgaaacaaa tgaaagctaa ggaaattaga gacttaacca cttcagaaat
    34921 cgaagaacaa atcaaatctt caaaagaaga gctttttaac ctacgctttc agttagctac
    34981 aggtcaatta gaagaaactg cacgtattcg tacagtaaga aaaacgattg cacgtctaaa
    35041 aactgttgct cgtgaaagag aaattgaaca aagtaaggct aatcaataat taagtaagag
    35101 gaggttacaa aagtgagcga aagaaacgat cgtaaagttt atgtaggtaa agttgtttca
    35161 gacaaaatgg acaagactat tacagtactt gttgaaactt acaaaacaca caaattatac
    35221 ggtaaacgag taaaatactc taaaaaatac aaaactcatg atgaaaacaa ttcagctaaa
    35281 ttaggagaca ttgttaaaat tcaagaaact cgtcctttat cagcaacaaa acgttttcgt
    35341 ttagtagaga ttgttgaaga gtcagtaatt atttaataca agtttagaga taagggaggt
    35401 ttaactaatg atccaacaag aaacacgctt gaaagtagca gacaactctg gtgctcgtga
    35461 agttcttaca atcaaagtat taggtggatc tggtcgtaaa acagcaaaca tcggcgatgt
    35521 tatcgtatgt actgttaaaa atgcaacacc aggtggcgtt gttaaaaaag gtgacgttgt
    35581 caaagctgta atcgtacgta ctaagtcagg tgttcgtcgt aatgacggtt catacatcaa
    35641 atttgatgaa aatgcatgtg ttatcatccg tgatgacaaa ggcccacgtg gtactcgtat
    35701 cttcggacct gttgctcgtg aattacgtga aggtaacttc atgaaaatcg tatcattagc
    35761 accagaagta ctttaattaa taacaaccaa tacaaataag gaggtgccca catgcatatc
    35821 aaaaaaggtg acaacgttaa agttatcgca ggtaaagaca aaggtaaaga aggtaaagta
    35881 attgctactc tacctaaaaa agaccgtgtc gttgtggaag gtgttaacat tatgaaaaaa
    35941 caccaaaaac caactcaatt aaatcctgaa ggtggaatct tagaaacaga ggcagcaatc
    36001 catgtttcta atgtacaatt attggaccct aaaacaaacg aaccaactcg tgtaggttac
    36061 aaatttgttg atggtaaaaa agttcgtatc gctaaaaaat ctggcgaaga aattaaatct
    36121 aataattaat aacaagttga aaggaggatc ccactttgaa ccgtttaaaa gaaaagttta
    36181 acactgaagt tactgaaaac ttaatgaaaa aattcaatta tagttcagta atggaagtac
    36241 caaaaataga taaaatcgtt gtgaacatgg gtgtaggtga cgcagtacaa aattctaaag
    36301 tattagacaa tgctgttgaa gaattagaat tgatcactgg tcaaaaacca ttagtaacta
    36361 aagctaaaaa atcaatcgcg actttccgtt tacgtgaagg tatgccaatc ggtgcgaaag
    36421 taacacttcg cggtgaaaga atgtatgaat tcttagacaa attaatttca gtatcattac
    36481 cacgtgtacg tgacttccaa ggtgtttcta aaaaagcatt tgacggacgc ggtaactaca
    36541 ctttaggtgt taaagaacaa ttaattttcc cagaaatcga ctatgataaa gtaagtaaag
    36601 ttagaggaat ggatattgtt atcgtaacga ctgctaacac tgatgaagaa gctcgtgaat
    36661 tgttagctaa cttcggtatg ccattccgta aataattatt taaaggaggc taattaagtg
    36721 gctaaaactt caatggttgc taagcaacaa aaaaaacaaa aatatgcagt tcgtgaatac
    36781 actcgttgtg aacgttgtgg ccgtccacat tctgtatatc gtaaatttaa attatgccgt
    36841 atttgtttcc gtgaattagc ttacaaaggc caaatccctg gcgttcgtaa agctagctgg
    36901 taataaaaaa gagtctgaaa ggaggcaaca atcaatgaca atgacagatc caatcgcaga
    36961 tatgcttact cgtgtaagaa acgcaaacat ggtgcgtcac gagaagttag aattacctgc
    37021 atcaaatatt aaaaaagaaa ttgctgaaat cttaaagagt gaaggtttca ttaaaaatgt
    37081 tgaatacgta gaagatgata aacaaggtgt acttcgttta ttcttaaaat atggtcaaaa
    37141 cgatgagcgt gttatcacag gattaaaacg tatttcaaaa ccaggtttac gtgtttatgc
    37201 aaaagctagc gaaatgccta aagtattaaa tggtttaggt attgcattag tatcaacttc
    37261 tgaaggtgta atcactgaca aagaagcaag aaaacgtaat gttggtggag aaattatcgc
    37321 atacgtttgg taataaaaaa taaggaggtg ccataacatg agtcgtgttg gtaagaaaat
    37381 tattgacatc cctagtgacg taacagtaac ttttgatgga aatcatgtaa ctgttaaagg
    37441 tcctaaaggt gaattatcaa gaactttaaa tgaaagaatg acattcaaac aagaagaaaa
    37501 cacaattgaa gttgtaagac catctgattc taaagaagat agaacaaacc atggtacaac
    37561 tcgtgcttta ttaaacaata tggtacaagg tgtttctcaa ggatacgtaa aagtacttga
    37621 acttgttggt gtaggttacc gtgctcaaat gcaaggtaaa gacttaatcc ttaacgttgg
    37681 ttattctcac ccagtagaaa ttaaagctga agaaaacatt actttctcag ttgagaaaaa
    37741 cacagtcgtt aaagttgaag gtatttcaaa agaacaagtt ggagcattag catctaacat
    37801 ccgttcagta agacctccag agccttacaa aggtaaaggt attcgttacc aaggtgaata
    37861 cgttcgccgt aaagaaggta aaactggtaa ataatagata aactctaaag aaaggagtat
    37921 tgaaatgatc agtaaaattg ataaaaataa agtgcgttta aaaagacatg ctcgtgttcg
    37981 tactaactta tcaggtacag ctgaaaagcc acgtttaaac gtatatcgtt caaacaagca
    38041 tatctacgct caaattattg atgataataa aggcgtaaca ttagctcaag cttcttcaaa
    38101 agacagcgac attgctacta cagcaactaa agttgaatta gcaactaaag tcggtgaagc
    38161 aattgctaaa aaagctgctg acaaaggcat taaagaaatc gtatttgacc gtggaggata
    38221 tttatatcac ggacgtgtta aagcattagc tgaagcagca agagaaagcg gattagaatt
    38281 ttaatttaaa ggagggacaa atacatggct cgtagagaag aagagacgaa agaatttgaa
    38341 gaacgcgttg ttacaatcaa ccgtgtagca aaagttgtaa aaggtggtcg tcgtttccgt
    38401 ttcactgcat tagttgtagt tggagacaaa aatggtcgtg taggtttcgg tactggtaaa
    38461 gctcaagagg taccagaagc aatcaaaaaa gctgttgaag cagctaaaaa agatttagta
    38521 gttgttccac gtgttgaagg tacaactcca cacacaatta ctggccgtta cggttcagga
    38581 agcgtattta tgaaaccggc tgcacctggt acaggagtta tcgctggtgg tcctgttcgt
    38641 gccgtacttg aattagcagg tatcactgat atcttaagta aatcattagg atcaaacaca
    38701 ccaatcaaca tggttcgtgc tacaatcgat ggtttacaaa accttaaaaa tgctgaagat
    38761 gttgcgaaat tacgtggcaa aacagtagaa gaattataca attaaggagg gaaaactagt
    38821 tatggctaaa ttacaaatta ccctcactcg tagtgttatt ggtcgtcctg aaacacaacg
    38881 taaaactgtt gaagctttag gtcttaaaaa gactaacagt tcagtagttg ttgaagataa
    38941 ccctgctatt cgtgggcaaa tcaacaaagt taagcactta gtaacagtag aagaaaaata
    39001 atcaaggagg tgccgaaatg aaattacatg agttaaaacc ggcagaaggt tcacgtaaag
    39061 aacgcaatcg tgttggacgt ggtgttgcga caggtaacgg taaaacaagt ggtcgcggac
    39121 acaaaggtca aaaagctcgt tcaggcggtg gtgtaagacc aggatttgaa ggtggtcaat
    39181 taccattatt ccgtcgttta ccaaaacgtg gttttactaa cataaatcgt aaagaatatg
    39241 ctattgttaa cttagaccaa cttaataaat ttgaagatgg tactgaagta actccagctt
    39301 tattagtaga atctggtgtt gttaagaatg aaaaatctgg tatcaaaata ctaggtaatg
    39361 gttcacttga taagaaattg acagtgaaag ctcataaatt ctcagcttca gcagcagaag
    39421 ctattgatgc taaaggtgga gcacacgagg tgatctaatg attcaaaccc ttgtgaactt
    39481 ctttagaaca aaagaggttc gtaacaagat tttcttcaca ctagcaatgt tagtaatttt
    39541 taaaataggg acttatatac cagctccagg agtaaatcct gcagcttttg ataatcccca
    39601 aggttctcaa ggtgccactg agttattaaa tacttttggt ggcggagcct tgaaacgatt
    39661 ttctattttt gcaatgggta ttgtacccta catcactgca tcaatcgtaa tgcaattatt
    39721 acaaatggat attgtcccta aattctcaga atgggcaaaa caaggtgaag taggtagaag
    39781 aaagttaaat aacgttactc gttatttagc aatttcttta gcatttatcc aatctatagg
    39841 tatggcattc caatttaata attatctcaa aggtgcgctg attatcaatc agtcaattat
    39901 gagttattta ttaatagcac tagttttgac agcaggaact gctttcttaa tatggcttgg
    39961 tgatcaaatc actcagttcg gtgttggtaa tggtatttct attatcatat ttgcgggtat
    40021 tttatcaacg ttgccagcca gtctaattca atttggacaa actgcgttcg ttgggcaaga
    40081 agatacatca ttagcatggt tgaaagtatt aggactttta gtgtcactga tactattaac
    40141 tgtaggtgct atttatgtac ttgaagccgt tcgtaaaatt ccgattcaat atgctaagaa
    40201 acaaactgct caaagattag gttcacaggc aacttatcta cctttaaaag tgaactcagc
    40261 cggtgttatt cctgtaatct ttgcaatggc gttcttctta ctgcctagaa cattaacgtt
    40321 gttctatcca gataaagaat gggcacaaaa cattgcgaat gctgcaaatc cttcaagtaa
    40381 tgttggtatg gttgtatata ttgtactaat tatactattc acatacttct atgcatttgt
    40441 acaagttaat ccggaaaaaa tggctgataa ccttaagaaa caaggtagct atgttccagg
    40501 tattagacct ggtgaacaaa ccaaaaaata tattactaaa gttttatatc gtttaacttt
    40561 tgtaggttct atcttcttag ccgttatttc aattctaccg atattagcaa ctaagtttat
    40621 gggattacca caatcaattc agattggtgg tacaagttta cttatcgtta ttggtgtagc
    40681 gattgaaaca atgaaatctt tagaagctca agtatctcaa aaagaatata aaggctttgg
    40741 tggtagataa ttttaggagg gcacttatga atatcatttt gatgggttta cctggcgcag
    40801 gtaaaggaac tcaagcaagt gaaattgtca agaaattccc aataccccac atttcaactg
    40861 gtgacatgtt cagaaaagct ataaaagaag aaactgaatt aggtaaagaa gctaagtctt
    40921 atatggaccg tggcgaatta gttcctgatg aagtgactgt aggtatcgtt aaggaaagaa
    40981 tttctgaaga cgatgcaaaa aaaggctttt tattagatgg cttcccaaga acaatcgagc
    41041 aagctgaggc attaaataat attatgtctg agcttgacag aaacattgat gctgtcatca
    41101 atatcgaagt tccggaagaa gaattaatga accgtcttac aggtcgtcga atctgtgagt
    41161 catgtggtac aacgtatcat cttgtattta atcctccgaa ggtcgaaggt atttgtgata
    41221 tcgatggtgg taaattgtat caacgagaag atgataatcc tgaaacggta gctaatcgtt
    41281 tgagtgttaa tattaaacaa tctaagccta ttttagattt ctatgatcaa aaaggtgtat
    41341 tgaaaaatat tgatggttca aaagatatta gcgacgttac caaagatgtc attgatattt
    41401 tagatcattt gtaatagatc aacttttagc ggtctatttt aagtgaggca tgatttaatc
    41461 atattagata gatgagagtg gcaattaacg ataattaatt cccgtaattt ttgtttaact
    41521 tataaaatta atcactgata gattcgtaac aataaagttg tctattgacg attaccttac
    41581 tattgcaaaa agggggaagt taatcaatgg ctaaacaaga tgtaattgaa ttagaaggta
    41641 ctgtattaga tactttaccg aacgcaatgt ttaaagtaga attagaaaat ggtcatgaga
    41701 ttttagctca cgtaagtggt aaaatcagaa tgaattacat tcgtattcta cctggcgaca
    41761 aagtaactgt tgagatgtct ccgtacgatt taacacgcgg aagaattact tatcgttata
    41821 aataatcgtc actccataat atagggaggt ataaaaatga aagtaagacc atcagtaaaa
    41881 cctatttgcg aaaaatgtaa agtcattaaa cgtaaaggta aagtaatggt aatttgtgaa
    41941 aatccaaaac acaaacaaag acaaggttaa taaaagagag gtgtaaatta atatggcacg
    42001 tattgcagga gtagatattc cacgtgaaaa acgcgtagtt atctcattaa cttatatata
    42061 cggtatcggt acgtcaactg ctcaaaaaat tcttgaagaa gctaacgtat cagctgatac
    42121 tcgtgtgaaa gatttaactg atgacgaatt aggtcgcatc cgtgaagttg tagacggtta
    42181 taaagtcgaa ggtgacttac gtcgtgaaac taacttaaat atcaaacgtt taatggaaat
    42241 ttcatcatac cgtggtatcc gtcaccgtcg tggtttacca gttcgtggtc aaaaaacgaa
    42301 aaacaacgcg cgtactcgta aaggaccagt taaaacggta gctaacaaga aaaaataata
    42361 ggtaaaggag gcaaatttta aatggcacgt aaacaagtat ctcgtaaacg tagagtgaaa
    42421 aagaatattg aaaatggtgt agcacacatc cgttcaacat tcaacaacac tattgtaact
    42481 atcactgatg agttcggtaa tgctttatca tggtcatcag ctggtgcatt aggattcaaa
    42541 ggatctaaaa aatcaacacc atttgcagca caaatggctt ctgaaactgc atctaaatca
    42601 gctatggagc atggtttaaa aacagttgaa gtaacagtta aaggacctgg tccaggtcgt
    42661 gaatcagcta ttcgtgcatt acaatctgca ggtttagaag taactgcgat cagagacgtt
    42721 actccagtac ctcataacgg ttgtcgtcca ccaaaacgtc gtcgtgtata atttatgatg
    42781 gtattgttac aggtcactga gcaaacattt taaattaagt cgacgtatat aaggaggata
    42841 tttaaatgat agaaatcgaa aaacctagaa ttgagacaat tgaaattagt gaagatgcta
    42901 aattcggtaa gttcgttgtt gaaccactag aacgtggcta cggtactaca ctaggaaact
    42961 ccttacgtcg tatcctacta tcttcattac caggtgcagc cgttaagtat attgaaattg
    43021 agggagtttt acatgaattc tcagcagtag acaatgtagt tgaagatgtt tctacaatta
    43081 ttatgaacat taaacaatta gcattgaaaa tttactctga agaagataaa actttagaaa
    43141 ttgatgtacg tgatgaaggc gaagtaacag caagcgacat tacacatgat agtgatgttg
    43201 aaattttaaa cccagagctt aaaattgcaa cagtatctaa aggtggtcac ttaaaaattc
    43261 gtctagttgc taacaagggt agaggttacg cattagcaga acaaaataat actagtgatt
    43321 taccaattgg tgtaatccct gttgattcat tgtattcacc tgttgaacgt gtgaactata
    43381 ctgttgaaaa tacacgtgta ggtcaaagca gtgattttga taaattaaca ttggatgttt
    43441 ggactaatgg ttcaatcaca ccacaagaat cagtttcatt agcagcaaaa ataatgactg
    43501 aacacttgaa tatcttcgtt ggtcttactg atgaagcgca aaacgctgaa atcatgattg
    43561 aaaaagaaga agatcaaaaa gaaaaagtat tagaaatgtc tattgaagaa ttagacttat
    43621 ctgtacgttc atataactgc ttaaaacgcg caggaatcaa ttctgttcaa gagttagctg
    43681 acaaatctga agctgacatg atgaaagtgc gtaatttagg tcgtaaatct ttagaagaag
    43741 ttaaatacaa attagaagat ttaggattag gattaagaaa agaagattga taaaggaggt
    43801 taactcatgg gttacagaaa attaggtcgt acttctgatc aacgtaaagc tatgttacgt
    43861 gacttagcta catcacttat tattagtgaa cgtattgaaa ctacagaagc tcgtgcaaaa
    43921 gaagttcgca gtgttgttga gaaattaatc actttaggta aaaaaggaga tttagcttct
    43981 cgtcgtaatg cagctaaaac tttacgtaat gttgaaatct taaacgaaga tgaaactaca
    44041 caaactgcac ttcaaaaatt atttggtgaa atcgcagagc gttacacaga acgtcaaggt
    44101 ggttacactc gtatccttaa acaaggccct cgtcgcggtg acggtgctga atcagtaatt
    44161 atcgaattag tataagaatt tatataaata cactaactac ttttatataa agcaaatgag
    44221 tgcaacgata atgtttgcca catacaaata ttgtctagct cagagtaccc catcaactaa
    44281 ataaagattt aaagcgtgaa ctcaacaaac ttatgatggg gtgcgcgctt ttttattgaa
    44341 taaaatatcg gacttatgaa cagaaatgtt tttaagtccg atttctttat atttactttt
    44401 ttgagtgcga atctaaaaat atgatgaagc tagtttgatc aatttcacta gaactgaatg
    44461 aagtgaaagt attatcgttg aatcaaacgc gaccacccct atattagtaa atcatttatt
    44521 ttattaacgt ttatacataa ttgttagaga ggaataaaag tccttatcat tagttgttaa
    44581 acaacacttt aaagactaga aatgagtcag aaaatactag taatatatag agaacccagt
    44641 caatgtcata tacagcgatt tataaatatt gtaaaatatg atagatacac gaatcgtaaa
    44701 ggagagagac aagtggagga taagaattca gttattgtat ttaaaaatgt ttcatttcaa
    44761 tatcaaagtg atgcatcctt cacattgaaa gatgtttctt ttaatatacc taaaggtcag
    44821 tggacatcta ttgttggtca taacggttct ggaaaatcta caattgccaa gttaatgatt
    44881 ggcatagaga aagttaaatc tggagaaatt ttttataata atcaagctat aactgatgat
    44941 aattttgaaa agttaagaaa agacatagga attgtatttc agaatccgga taatcaattt
    45001 gttggttcaa ttgtaaaata cgatgtggca tttggactcg aaaatcatgc ggttccatat
    45061 gacgaaatgc atagaagagt cagcgaagca cttaaacaag ttgatatgtt agaacgtgca
    45121 gattatgaac ctaatgcatt atcgggggga cagaagcagc gtgtggctat agcaagtgta
    45181 ttagcactta acccctctgt cattatatta gatgaggcga cttctatgtt agatcctgat
    45241 gcacgtcaaa atttattgga tttagtgaga aaagttaaat cagaacataa tattacaatc
    45301 atttctatta cgcatgattt atctgaggcg atggaagcag atcatgttat cgttatgaat
    45361 aaagggactg tctataaaga aggcacagcg actgaaattt tcgacaatgc agaagagtta
    45421 acaagaatag gtctagattt gccattccca atcaaaataa atcaaatgct gggacaccaa
    45481 acatcattct taacttatga agggctggtg gatcaactat gactatacgg tttgacaatg
    45541 taagttatac ctatcaaaaa gggacaccat atcagcatca agctattcat gatgttaata
    45601 cagaatttga acaaggtaaa tattacgcca tcgttggaca aacgggtagt ggtaaatcaa
    45661 cgttgataca aaatattaat gcgctgttaa agccgactac tgggacagtt acagttgatg
    45721 acattactat tacacataag accaaagata aatatattag acctgtaaga aaaagaattg
    45781 gaatggtatt tcaatttccc gaatctcaat tatttgagga cacagtagag cgtgaaatga
    45841 tatttggacc taaaaacttt aaaatgaatt tagatgaagc caaaaactat gcccatcgtc
    45901 tgttgatgga tttaggcttt tcaagagatg taatgtcaca atcaccattt caaatgtcag
    45961 gtggacaaat gcgtaaaata gcgattgtat cgatattggc aatgaatcct gatattatcg
    46021 tggttgatga acctacagca ggacttgatc cacaaagtaa acgacaagta atgagattac
    46081 taaagtcact acaaacagat gaaaataagg caattatcct aatttcacat gatatgaatg
    46141 aagtcgcgcg ttatgcagat gaagtcatcg ttatgaaaga aggtagtata gtgtcgcaaa
    46201 catcaccaaa agagctcttc aaagataaaa aaaaattggc ggattggcat attggtttgc
    46261 cagaaattgt tcagttacaa tatgactttg aacaaaaata tcaaacaaaa ttaaaagata
    46321 ttgccttaac tgaagaagca tttgtaagct tgtataagga gtggcaacat gaaaaataaa
    46381 ttgattatag ggcgatattt accaattaat tcttttgttc atcatcttga tccaagagca
    46441 aagttaatgt ttgtttttct ttttattata ttaatatttt tctgtcattc accattaaca
    46501 tatctttggg tgtttgcact tatcttattc attatgagat tagcaaaaat tcaattatgg
    46561 ttcctaatca aaggtttaac accaatattt ttctttttaa tcttcacatt aatgatgcat
    46621 atatttttaa ctaaaggtgg atatgtatta gttgaatggc atggcatcac gattgaaact
    46681 aatggtattt tagaagggct atatatatca ctgcgtttaa ttgggattgt aatgattgca
    46741 acaattatga cactatctac aagtccaatt gatttaacag atgcgtttga aagattactt
    46801 gcaccactaa agatgtttaa attaccagtt catcaattaa gtatgataat gtccattgcg
    46861 ttacgattca tcccgacgtt aatggatgag ttagataaaa tcattttggc gcaaaagtcg
    46921 cgtggttctg aaataagttc agggaacatt gcaacacgta ttaaatcatt tattccatta
    46981 ctagtgccac tattcatctc agctttccaa cgcgccgaag aattagcggt cgcaatggaa
    47041 gttaggggtt atgatgccaa tgttaagaga acgagctaca gacagcttaa atggcaattg
    47101 agagatacga tatctttaac catgattatc ccaattgcaa ttattttatt cgtattaaaa
    47161 tattcaggag tgtaaattca tgcgtatatt agtagaaatt gcgtatcaag gaaataattt
    47221 tctaggtttt caaattcaac aaaatggtcg aacggtacag caacaatttg aaaagctatt
    47281 acaacgcatg cataaaagac atgtgagaat ccatccttca agtaggactg atagaggtgt
    47341 acatgcgata cagcaatact ttcatttcga cacagagctg aatataccta tgtcacaatg
    47401 gcaatatgca atgaaccgaa cgttacctga tgatatttat gtcaacaatg tagttacagt
    47461 cgatgacgat tttcattgtc gttatgattg tgtaggtaaa cgttatcgct acaaagtata
    47521 tcaagcacaa caccgcgatc catttcaaag tggtttgaaa acatttattc ctgaaacgtt
    47581 ggatttaggt aaaatgaaca gagcggcgca acaattcata ggtacacatg attttacggg
    47641 attttgttcg caaaaaactg aagtagaaag caaagttaga acattatacc aaagtgaaat
    47701 cgtaaagaca gatgatggct ttgattatat tgtcactgga tctggatttt tatataacat
    47761 ggtgcgtgtc ttagttgcat ttttaataga agttggaaaa gggcgacatg aagtatctga
    47821 tgtaccaaaa cttcttgaat caaagaatcg taagaatgta cctttcactg caccggctga
    47881 aggattatat ttagagaaaa tttatttaga tgaaaatgag ttattaaaag actttggtaa
    47941 cgatatcaaa atacatcgta aaaaatcatt acaaaatgac tgattgccat tgacaaaaag
    48001 cttgtgaaat tataagatta ttaacggtat tgttttatat ccaccccacg ataagccccg
    48061 gaaacttatt gtgttacaag atatataagc agaaacgaac aacagttaac aaaataaatg
    48121 aaattaaacg ttttaaaaat gaaacaaatg aaatcatcta ttaggttatg aaactgttta
    48181 tagcttgaat agaagcattt attttttagg aggacaatta ttatgcgtca aacatttatg
    48241 gcaaatgaat caaacattga gcgcaaatgg tatgttatcg atgctgaagg ccaaacatta
    48301 ggtcgtttat catcagaagt agcatctatc ttacgcggta aaaataaagt aacttacaca
    48361 ccacacgttg atactggtga ttatgtaatc gttattaatg catcaaaaat cgaatttact
    48421 ggtaacaaag aaactgacaa agtttactac cgtcactcaa atcacccagg tggtatcaaa
    48481 tcaatcactg ctggtgaatt aagaagaact aacccagaac gtttaattga aaactcaatt
    48541 aaaggtatgt taccaagcac tcgtttaggc gaaaaacaag gtaaaaaatt atttgtatat
    48601 ggtggcgctg aacatccaca cgctgcacaa caaccagaaa actacgaatt acgtggttaa
    48661 ttagaaggag gaaatgactt tggcacaagt tgaatataga ggcacaggcc gtcgtaaaaa
    48721 ctcagtagca cgtgtacgtt tagtaccagg tgaaggtaac atcacagtta ataaccgtga
    48781 cgtacgcgaa tacttaccat tcgaatcatt aattttagac ttaaaccaac catttgatgt
    48841 aactgaaact aaaggtaact atgatgtttt agttaacgtt catggtggtg gtttcactgg
    48901 acaagctcaa gctatccgtc acggaatcgc tcgtgcatta ttagaagcag atcctgaata
    48961 cagaggttct ttaaaacgcg ctggattact tactcgtgac ccacgtatga aagaacgtaa
    49021 aaaaccaggt cttaaagcag ctcgtcgttc acctcaattc tcaaaacgtt aattgtcgga
    49081 cgatatatac aaaacacctc gatattatgt cgaggtgttt ttttgcgttt ttgcggcgaa
    49141 tatggaatgt gtagaatata aatgaatttt taccttccca ccataaaaga tgaagaacca
    49201 tgaaatgtgg agaacaataa atagttgata ttctgttatt tttttggaag tgaagtgatt
    49261 tgaatacttt actctaaacg ataaaaggtt aaaaaaacaa caaaaagaaa atattactgt
    49321 cataattgga aatacaccgt attctgctgg tcaatctagt gtaaataatg ataataaaaa
    49381 aatgaatatg aaaaattaaa tgcaaaaata gcaaatacct atgcaaattt ttcaacagca
    49441 aatttaaaaa aatcattata tgattcgtat atacaggctt ttcgatgggc aactgataga
    49501 gttggaaaaa aggtattata ggatttgtaa caaatggatc atttattgat agtcaaagca
    49561 ctgatggatt tagaaaagtt ttatacgatg aatttaacta tctgtacata attaatttga
    49621 gaggcgacca acgaacacag ggtgaaaaat caagaaaaga aggtggaaaa atatttggat
    49681 caggaagtag agcaccgata gctatatcta ttttagttaa agatggaagt tacaatcacg
    49741 atatctatta taatgacatt ggtgaatatt taactagaga gcaaaaatta gatactttaa
    49801 tgaaacatca atcaattgtg aatttgaaaa gtttgaatgt tttacccgat aaaaacaatg
    49861 attggattaa tcaacgagac ataaactatg agaattattt accaatgtat gattccaagg
    49921 atatt
//
LOCUS       DAMQWL010000004        44840 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.004, whole genome shotgun sequence.
ACCESSION   DAMQWL010000004 DAMQWL010000000
VERSION     DAMQWL010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 44840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 44840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..44840
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.004"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            431..631
                     /locus_tag="PF788_000274"
     CDS             431..631
                     /locus_tag="PF788_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001059082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDG6302567.1"
                     /translation="MNNGTVKWFNAEKGFGFIEQENGGDVFVHFSGIASDGYKTLEEG
                     QKVTFEITEGQRGDQAVNVQTV"
     gene            complement(758..1327)
                     /locus_tag="PF788_000275"
     CDS             complement(758..1327)
                     /locus_tag="PF788_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDG6302568.1"
                     /translation="MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDI
                     HNLLMMCELFNVTLDDLVKGTIPFVPDIKAQRSLNLWTYVMLIFMTLAAILMGPLVVY
                     WNWTWGVTVAIILGIGFYASMKIEDLKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNT
                     MTNALSIISVIGILSLIIFLSVYLANKFL"
     gene            complement(1587..1982)
                     /locus_tag="PF788_000276"
     CDS             complement(1587..1982)
                     /locus_tag="PF788_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3147 family protein"
                     /protein_id="HDG6302569.1"
                     /translation="MKLTLMKFFVGGFAVLLSYIVSVTLPWKEFGGIFATFPAVFLVS
                     MFITGMQYGDKVAVHVSRGAVFGMTGVLVCILVTWMMLHMTHMWLISIVVGFLSWFIS
                     AVCIFEAVEFIAQKRLEKHSWKAGKSNSK"
     gene            complement(2050..2403)
                     /locus_tag="PF788_000277"
     CDS             complement(2050..2403)
                     /locus_tag="PF788_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3147 family protein"
                     /protein_id="HDG6302570.1"
                     /translation="MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFL
                     AAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLTSLYIKHKGYRKGAIFTVV
                     CWFVISLAIFSIRHL"
     gene            complement(2856..3695)
                     /gene="noc"
                     /locus_tag="PF788_000278"
     CDS             complement(2856..3695)
                     /gene="noc"
                     /locus_tag="PF788_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion protein"
                     /protein_id="HDG6302571.1"
                     /translation="MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQP
                     RQVFEPNKIKELAESIHEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVI
                     IRDMDDEETAVVALIENIQRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIA
                     NKLRLLKLAPKVLLRLREGKITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRV
                     RQKTGPEKVKAQNLRFAQDVTQARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRI
                     YKR"
     gene            complement(3738..4457)
                     /gene="rsmG"
                     /locus_tag="PF788_000279"
     CDS             complement(3738..4457)
                     /gene="rsmG"
                     /locus_tag="PF788_000279"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDG6302572.1"
                     /translation="MTVEWLAEQLKEHNIQLTETQKQQFQTYYRLLVEWNEKMNLTSI
                     TDEHDVYLKHFYDSIAPSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSL
                     NKRIQFLNHLASELQLQDVSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLP
                     LVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKR
                     QTPKKYPRKPGTPNKTPLLEK"
     gene            complement(4457..6334)
                     /gene="mnmG"
                     /locus_tag="PF788_000280"
     CDS             complement(4457..6334)
                     /gene="mnmG"
                     /locus_tag="PF788_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501497.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDG6302573.1"
                     /translation="MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMP
                     CNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLY
                     QQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGE
                     IILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPG
                     DDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPS
                     IEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMM
                     RAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGKV
                     LNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGY
                     ELGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGILAID
                     LLRRPEMTYDIILELLEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKI
                     PEDLDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQRVS
                     D"
     gene            complement(6401..7780)
                     /gene="mnmE"
                     /locus_tag="PF788_000281"
     CDS             complement(6401..7780)
                     /gene="mnmE"
                     /locus_tag="PF788_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDG6302574.1"
                     /translation="MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLND
                     VPSHTINYGHIIDPESKEVIEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELT
                     MTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLI
                     KKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIM
                     REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDT
                     AGIRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIV
                     NKMDLEQNIDINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYV
                     SNSRHISLLKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQ
                     LFSQFCLGK"
     gene            complement(7919..8272)
                     /gene="rnpA"
                     /locus_tag="PF788_000282"
     CDS             complement(7919..8272)
                     /gene="rnpA"
                     /locus_tag="PF788_000282"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDG6302575.1"
                     /translation="MLLEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFR
                     LGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSL
                     EHVLKIAKVFNKKIK"
     gene            complement(8393..8530)
                     /gene="rpmH"
                     /locus_tag="PF788_000283"
     CDS             complement(8393..8530)
                     /gene="rpmH"
                     /locus_tag="PF788_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000240855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDG6302576.1"
                     /translation="MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLS
                     A"
     gene            9261..10622
                     /gene="dnaA"
                     /locus_tag="PF788_000284"
     CDS             9261..10622
                     /gene="dnaA"
                     /locus_tag="PF788_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDG6302577.1"
                     /translation="MSEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLS
                     SIPFNANWLNQQYAEIIQAILFDVVGYEVKPHFITTEELANYSNNETATPKETTKPST
                     ETTEDNHVLGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGL
                     GKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLI
                     DDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIV
                     DITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLL
                     GKPITTELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPR
                     QIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEI
                     RNV"
     gene            10900..12033
                     /gene="dnaN"
                     /locus_tag="PF788_000285"
     CDS             10900..12033
                     /gene="dnaN"
                     /locus_tag="PF788_000285"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000969809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDG6302578.1"
                     /translation="MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVI
                     LTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQ
                     FQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETR
                     PVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDN
                     EEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAID
                     RASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYM
                     MDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTY"
     gene            12414..12659
                     /gene="yaaA"
                     /locus_tag="PF788_000286"
     CDS             12414..12659
                     /gene="yaaA"
                     /locus_tag="PF788_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HDG6302579.1"
                     /translation="MIILVQEVVVEGDINLGQFLKTEGIIESGGQAKWFLQDVEVLIN
                     GVRETRRGKKLEHQDRIDIPELPEDAGSFLIIHQGEQ"
     gene            12656..13768
                     /gene="recF"
                     /locus_tag="PF788_000287"
     CDS             12656..13768
                     /gene="recF"
                     /locus_tag="PF788_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDG6302580.1"
                     /translation="MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIY
                     TLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQS
                     RLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
                     NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDK
                     EALSLNYLPSLKFDYAQNEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNG
                     MDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTI
                     QHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK"
     gene            13778..15712
                     /gene="gyrB"
                     /locus_tag="PF788_000288"
     CDS             13778..15712
                     /gene="gyrB"
                     /locus_tag="PF788_000288"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDG6302581.1"
                     /translation="MVTALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGL
                     HHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVI
                     LTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQF
                     DLKEVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERD
                     EENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATN
                     LLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAII
                     SIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA
                     RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSR
                     TQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTD
                     ADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLK
                     SELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD
                     VVENRRQFIEDNAVYANLDF"
     gene            15749..18412
                     /gene="gyrA"
                     /locus_tag="PF788_000289"
     CDS             15749..18412
                     /gene="gyrA"
                     /locus_tag="PF788_000289"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HDG6302582.1"
                     /translation="MAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKP
                     VHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYP
                     LVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVL
                     PARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDF
                     PTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEK
                     IAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVN
                     MIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHID
                     EIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLN
                     YISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIV
                     ITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGR
                     VYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKRGVV
                     KRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRP
                     LGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGK
                     GIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRL
                     GDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGTEQQREAVVNDETPGNAIHTEVID
                     SEENDEDGRIEVRQDFMDRVEEDIQQSSDEE"
     gene            complement(18499..19311)
                     /locus_tag="PF788_000290"
     CDS             complement(18499..19311)
                     /locus_tag="PF788_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002461649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HDG6302583.1"
                     /translation="METLNSINIPKRKEDSHKGDYGKILLIGGSANLGGAIMLAARAC
                     VFSGSGLITVATHPTNHSALHSRCPEAMVIDINDTKMLTKMIEMTDSILIGPGLGVDF
                     KGNNAITFLLQNIQPHQNLIVDGDAITIFSKLKPQLPTCRVIFTPHLKEWERLSGIPI
                     EEQTYERNREAVDRLGATVVLKKHGTEIFFKDEDFKLTIGSPAMATGGMGDTLAGMIT
                     SFVGQFDNLKEAVMSATYTHSFIGENLAKDMYVVPPSRLINEIPYAMKQLES"
     gene            19637..21151
                     /gene="hutH"
                     /locus_tag="PF788_000291"
     CDS             19637..21151
                     /gene="hutH"
                     /locus_tag="PF788_000291"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HDG6302584.1"
                     /translation="MTLYLDGETLTIEDIKSFLQQQSKIEIIDDALERVKKSRAVVER
                     IIENEETVYGITTGFGLFSDVRIDPTQYNELQVNLIRSHACGLGEPFSKEVALVMMIL
                     RLNTLLKGHSGATLELVRQLQFFINERIIPIIPQQGSLGASGDLAPLSHLALALIGEG
                     KVLYRGEEKDSDDVLRELNRQPLNLQAKEGLALINGTQAMTAQGVISYIEAEDLGYQS
                     EWIAALTHQSLNGIIDAYRHDVHAVRNFQEQINVAARMRDWLEGSTLTTRQSEIRVQD
                     AYTLRCIPQIHGASFQVFNYVKQQLEFEMNAANDNPLIFEEANETFVISGGNFHGQPI
                     AFALDHLKLGVSELANVSERRLERLVNPQLNGDLPAFLSPEPGLQSGAMIMQYAAASL
                     VSENKTLAHPASVDSITSSANQEDHVSMGTTAARHGYQIIENARRVLAIECVIALQAA
                     ELKGVEGLSPKTRRKYDEFRSIVPSITHDRQFHKDIEAVAQYLKQSIYQTTACH"
     misc_binding    21224..21440
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            21530..22816
                     /gene="serS"
                     /locus_tag="PF788_000292"
     CDS             21530..22816
                     /gene="serS"
                     /locus_tag="PF788_000292"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDG6302585.1"
                     /translation="MLDIRLFRNEPDTVKSKIELRGDDPKVVDEILELDEQRRKLISA
                     TEEMKARRNKVSEEIALKKRNKENADDVIAEMRTLGDDIKEKDSQLNEIDNKMTGILC
                     RIPNLISDDVPQGESDEDNVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAAKVSG
                     ARFVYLTNEGAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDL
                     FKVEKEGLYTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLI
                     RLHQFDKVEMVRFEQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKT
                     YDLEVWLPSYNDYKEISSCSNCTDFQARRANIRFKRDKAAKPELAHTLNGSGLAVGRT
                     FAAIVENYQNEDGTVTIPEALVPFMGGKTQISKPVK"
     gene            23466..24161
                     /locus_tag="PF788_000293"
     CDS             23466..24161
                     /locus_tag="PF788_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDG6302586.1"
                     /translation="MTTHLSFRQGVQECIPTLLGYAGVGISFGIVASSQNFSILEIVL
                     LCLVIYAGAAQFIMCALFIAGTPISAIVLTVFIVNSRMFLLSMSLAPNFKTYGFWNRV
                     GLGSLVTDETFGVAITPYLKGEAINDRWMHGLNITAYLFWAISCVAGALFGEYISNPQ
                     TLGLDFAITAMFIFLAIAQFESITKSRLRIYIVLIIAVIVMMLSLSMFMPSYLAILIA
                     ATISAALGVMMEQ"
     gene            24158..24487
                     /locus_tag="PF788_000294"
     CDS             24158..24487
                     /locus_tag="PF788_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDG6302587.1"
                     /translation="MITHMNMLILILLCGIVTLLIRIIPFIMISKVQLPDVVVRWLSF
                     IPITLFTALVIDSIIQQTPHGEGYTLNIPYIIALIPTVILSIITRSLTITIISGIVIM
                     AALRFFF"
     regulatory      24692..24790
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            24850..25818
                     /locus_tag="PF788_000295"
     CDS             24850..25818
                     /locus_tag="PF788_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDG6302588.1"
                     /translation="MTNYTVDTLNLGEFITESGEVIDNLRLRYEHVGYHGQPLVVVCH
                     ALTGNHLTYGTDDYPGWWREIIDGGYIPIHDYQFLTFDVIGSPFGSSSPLNDPHFPKK
                     LTLRDIVRANERGIQALGYDKINILIGGSLGGMQAMELLYNQQFEVDKAIILAATSRT
                     SSYSRAFNEIARQAIHLGGKEGLSIARQLGFLTYRSSKSYDERFTPDEVVAYQQHQGN
                     KFKEHFDLNCYLTLLDVLDSHNIDRGRTDVTHVFKNLETKVLTMGFIDDLLYPDDQVR
                     ALGERFKYHRHFFVPDNVGHDGFLLNFSTWAPNLYHFLNLKHFKRK"
     gene            26109..27047
                     /locus_tag="PF788_000296"
     CDS             26109..27047
                     /locus_tag="PF788_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YybS family protein"
                     /protein_id="HDG6302589.1"
                     /translation="MGVAYVFSKIQPKATIIATIALVFVALALYLVPGLGLIFALFAT
                     IPGIVLWNKSIQSFGISALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSKE
                     RILYVTTVAMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQIL
                     EEGFRQATVQLPGFIIIITFLIVLINLIVTFPILRKFKIATPVFKPLFAWQMSGILLW
                     IYIIVIICLLFTGQPSVFQSILLNFQLVLSLVMYIQGLSVIHFFGKAKGLPNAVTILL
                     LVIGTILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK"
     gene            27062..29029
                     /gene="gdpP"
                     /locus_tag="PF788_000297"
     CDS             27062..29029
                     /gene="gdpP"
                     /locus_tag="PF788_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP phosphodiesterase GdpP"
                     /protein_id="HDG6302590.1"
                     /translation="MNRQSTKKALLIPFVIMIITAIVLMGVWFIFNSLIALIASIVLV
                     VMIIVSIILFRQALMKMDSYVDGLSAQISTTNNKAIKHLPIGIIVLDENDHIEWVNQF
                     MTDHMEANVISESVNEVFPNILKQLDRVKSVEIEYNQYHFQVRYSENDHCLYFFDITE
                     QVQTNELYENSKPIIATLFLDNYDEITQNMNDTQRSEINSMVTRVISRWATEYNIFFK
                     RYSSDQFVAYLNQKILADLEESKFDILSQLREKSVGYRAQLTLSIGVGEGTENLIDLG
                     ELSQSGLDLALGRGGDQVAIKSINGNVRFYGGKTDPMEKRTRVRARVISHALKDILAE
                     GDKVIIMGHKRPDLDAIGAAIGVSRFAMMNNLEAYIVLNETDIDPTLRRVMNEIDKKP
                     ELRERFITSDDAWDMMTSKTTVVIVDTHKPELVLDENVLNKANRKVVIDHHRRGESFI
                     SNPLLIYMEPYASSTAELVTELLEYQPTEQRLTRLESTVMYAGIIVDTRNFTLRTGSR
                     TFDAASYLRAHGADTILTQHFLKDDVDTYINRSELIRTVKVEDNGIAIAHGSDDKIYH
                     PVTVAQAADELLSLEGIEASYVVARREDNLIGISARSLGSVNVQLTMEALGGGGHLTN
                     AATQLKGVTVEEAIAQLQQAITEQLSRSEDA"
     gene            29026..29472
                     /gene="rplI"
                     /locus_tag="PF788_000298"
     CDS             29026..29472
                     /gene="rplI"
                     /locus_tag="PF788_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDG6302591.1"
                     /translation="MKVIFTQDVKGKGKKGEVKEVPVGYANNFLLKKNYAVEATPGNL
                     KQLELQKKRAKQERQQEIEDAKALKETLSNIEVEVSAKTGEGGKLFGSVSTKQIAEAL
                     KAQHDIKIDKRKMDLPNGIHSLGYTNVPVKLDKEVEGTIRVHTVEQ"
     gene            29504..30904
                     /gene="dnaB"
                     /locus_tag="PF788_000299"
     CDS             29504..30904
                     /gene="dnaB"
                     /locus_tag="PF788_000299"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDG6302592.1"
                     /translation="MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFY
                     RGAHQHIFRAMMHLNEDNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNV
                     QYYTDIVSKHALKRRLIQTADSIANDGYNDELELDAILSDAERRILELSSSRESDGFK
                     DIRDVLGQVYETAEELDQNSGQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTA
                     FALNIAQKVATHEDMYTVGIFSLEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSR
                     FTIAVGKLSRTKIFIDDTPGIRINDLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRAS
                     DNRQQEVSEISRTLKALARELECPVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDA
                     DIVAFLYRDDYYNRGGDEDDDDDGGFEPQTNDENGEIEIIIAKQRNGPTGTVKLHFMK
                     QYNKFTDIDYAHADMM"
     gene            31182..32465
                     /locus_tag="PF788_000300"
     CDS             31182..32465
                     /locus_tag="PF788_000300"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDG6302593.1"
                     /translation="MSSIVVVGTQWGDEGKGKITDFLAEQSDVIARFSGGNNAGHTIQ
                     FGGETYKLHLVPSGIFYKDKLAVIGNGVVVDPVALLKELDGLNERGIPTSNLRISNRA
                     QVILPYHLAQDEYEERLRGDNKIGTTKKGIGPAYVDKVQRIGIRMADLLEKETFERLL
                     KSNIEYKQAYFKGMFNETCPSFDDIFEEYYAAGQRLKEFVTDTSKILDDAFVADEKVL
                     FEGAQGVMLDIDHGTYPFVTSSNPIAGNVTVGTGVGPTFVSKVIGVCKAYTSRVGDGP
                     FPTELFDEDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLSINSIDVL
                     TGLDTVKICTAYELDGKEITEYPANLDQLKRCKPIFEELPGWTEDVTNVRTLEELPEN
                     ARKYLERISELCNVQISIFSVGPDREQTNLLKELW"
     gene            32895..32969
                     /locus_tag="PF788_000301"
     tRNA            32895..32969
                     /locus_tag="PF788_000301"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32928..32930,aa:Glu,seq:ttc)
     gene            32977..33049
                     /locus_tag="PF788_000302"
     tRNA            32977..33049
                     /locus_tag="PF788_000302"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:33010..33012,aa:Asp,seq:gtc)
     gene            33669..34370
                     /locus_tag="PF788_000303"
     CDS             33669..34370
                     /locus_tag="PF788_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6302594.1"
                     /translation="MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYE
                     EEPDIVLLDIMLPGRDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTK
                     PFSTRELIARVKANLRRHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTH
                     REFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEY
                     IVTRRGVGYFLQQHE"
     gene            34383..36209
                     /gene="walK"
                     /locus_tag="PF788_000304"
     CDS             34383..36209
                     /gene="walK"
                     /locus_tag="PF788_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     WalK"
                     /protein_id="HDG6302595.1"
                     /translation="MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNNLEKELLDN
                     FKKNITQYAKQLEISIEKVYDEKGSVNAQKDIQNLLSEYANRQEIGEIRFIDKDQIII
                     ATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVYNIPVKVDKKV
                     IGNIYIESKINDVYNQLNNINQIFIVGTAISLLITVILGFFIARTITKPITDMRNQTV
                     EMSRGNYTQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGI
                     IATDRRGRIRIVNDMALKMLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDL
                     NEEEGLIARVNFSTIVQETGFVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLT
                     SMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEI
                     IDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRG
                     DKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGL
                     AISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIEDGDWDE"
     gene            36202..37536
                     /locus_tag="PF788_000305"
     CDS             36202..37536
                     /locus_tag="PF788_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001060131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302596.1"
                     /translation="MNNKEHIKSVILALLVLMSVVLTYMVWNFSPDIANVDNTDSKKS
                     ETKPLTTPMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHV
                     RRDHNLMIPDLNSDFILFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDN
                     IVLYAISKDRHDYVKLTTTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAP
                     SKPEKLKTYRMVFNTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKY
                     HYKNLSEDEASSSKMEETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGY
                     PTFNKEGSNQIQVTWGEKGVFDYRRSLLRTDVVLNSEDNKSLPKLESVRSSLANNSDI
                     NFEKVTNIAIGYEMQDNSDHNHIEVQINSELVPRWYVEYDGEWYVYNDGRLE"
     gene            37537..38325
                     /locus_tag="PF788_000306"
     CDS             37537..38325
                     /locus_tag="PF788_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system regulatory protein YycI"
                     /protein_id="HDG6302597.1"
                     /translation="MNWKLTKTLFIFVFILVNIVLVSIYVNKVNRSHINEVESNNEVN
                     FQQEEIKVPTSILNKSVKGIKLEQITGRSKDFSSKAKGDSDLTTSDGGKLLNANISQS
                     VKVSDNNLKDLKDYVNKRVFKGAEYQLSEISSDSVKYEQTYDDFPILNNSKAMLNFNI
                     EDNKATSYKQSMMDDIKPTDGADKKHQVIGVRKAIEALYYNRYLKKGDEVINARLGYY
                     SVVNETNVQLLQPNWEIKVKHDGKDKTNTYYVEATNNNPKIINH"
     gene            38715..39515
                     /locus_tag="PF788_000307"
     CDS             38715..39515
                     /locus_tag="PF788_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDG6302598.1"
                     /translation="MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFS
                     QIDRNIQDLNGILVTHEHIDHIKGLGVLARKYQLPIYANEKTWQAIEKKDSRIPMDQK
                     FIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
                     GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAAHAMTDVITGNTKRIYL
                     SHLSQDNNMKDLARMSVGQVLNEHDIDTEKEVLLCDTDKAIPTPIYTI"
     gene            39743..42061
                     /gene="adsA"
                     /locus_tag="PF788_000308"
     CDS             39743..42061
                     /gene="adsA"
                     /locus_tag="PF788_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG-anchored adenosine synthase AdsA"
                     /protein_id="HDG6302599.1"
                     /translation="MKALLLKTSVWLVLLFSVMGLWQVSNAAEQHTPMKAHAVTTIDK
                     ATTDKQQVPPTKEAAHHSGKEAATNVSASAQGTADDTNSKVTSNAPSNKPSTVVSTKV
                     NETRDVDTQQASTQKPTHTATFKLSNAKTASLSPRMFAANAPQTTTHKILHTNDIHGR
                     LAEEKGRVIGMAKLKTVKEQEKPDLMLDAGDAFQGLPLSNQSKGEEMAKAMNAVGYDA
                     MAVGNHEFDFGYDQLKKLEGMLDFPMLSTNVYKDGKRAFKPSTIVTKNGIRYGIIGVT
                     TPETKTKTRPEGIKGVEFRDPLQSVTAEMMRIYKDVDTFVVISHLGIDPSTQETWRGD
                     YLVKQLSQNPQLKKRITVIDGHSHTVLQNGQIYNNDALAQTGTALANIGKITFNYRNG
                     EVSNIKPSLINVKDVENVTPNKALAEQINQADQTFRAQTAEVIIPNNTIDFKGERDDV
                     RTRETNLGNAIADAMEAYGVKNFSKKTDFAVTNGGGIRASIAKGKVTRYDLISVLPFG
                     NTIAQIDVKGSDVWTAFEHSLGAPTTQKDGKTVLTANGGLLHISDSIRVYYDINKPSG
                     KRINAIQILNKETGKFENIDLKRVYHVTMNDFTASGGDGYSMFGGPREEGISLDQVLA
                     SYLKTANLAKYDTTEPQRMLLGKPAVSEQPAKGQQGSKGSKSGKDTQPIGDDKVMDPA
                     KKPAPGKVVLLLAHRGTVSSGTEGSGRTIEGATVSSKSGKQLARMSVPKGSAHEKQLP
                     KTGTNQSSSPEAMFVLLAGIGLIATVRRRKAS"
     gene            42429..42908
                     /gene="rlmH"
                     /locus_tag="PF788_000309"
     CDS             42429..42908
                     /gene="rlmH"
                     /locus_tag="PF788_000309"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020363758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDG6302600.1"
                     /translation="MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAP
                     ENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSD
                     FVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK"
     gene            43230..44486
                     /locus_tag="PF788_000310"
     CDS             43230..44486
                     /locus_tag="PF788_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3578 domain-containing protein"
                     /protein_id="HDG6302601.1"
                     /translation="MIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQL
                     KVHIKEDKYSVVGKVATGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSL
                     NQGWSKISDMFPRDKNAAKQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKND
                     YPSGYSHGSIRFKYYDLNEGFTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDE
                     IQEDSEIEEIRTAQKDKTLKEVEAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGK
                     VGEKLALNYFNELIDNKIDEDKKEQFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEK
                     FIEIKTSTSSSIEEPFFMSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYS
                     EFKDVDDLIDKVFNVEAIQYKVFGEK"
     gene            complement(44594..>44840)
                     /locus_tag="PF788_000311"
     CDS             complement(44594..>44840)
                     /locus_tag="PF788_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001105942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HDG6302602.1"
                     /translation="KVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAK
                     NTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS"
BASE COUNT        15594 a         7176 c         8226 g        13844 t
ORIGIN      
        1 cttattattt aaaacgtcgt gaagaaaaag gcaagtaagc acattccatc ggtatagaac
       61 attgctatga cctttcaagt cagattttaa tatcaacaag tagcgtttat cgctgcttgt
      121 tttttatgga ttgcttataa aatcatcatg tttaaacgat atgtcacttt gaaaactagc
      181 aaacaccata aaagactaca atttttttat ttttataaac ccctttaaat caacgtttct
      241 aaggttttta aaaatctttt ttaatttatt ttcaaaaaac actgtacatt atgccaatat
      301 gagcgtatag ttggtcttac gtaataaaag ctcgtgaatt aaattgtagt gtatttgttt
      361 agaatatcct cttttttagt tatgaatttg ttacaaatat taagtgcaaa agcacacgga
      421 ggttttctat atgaataacg gtacagtaaa atggtttaac gcagaaaaag gttttggttt
      481 catcgaacaa gaaaatggcg gagacgtatt cgtacatttc tcaggtatcg ctagcgatgg
      541 ctacaaaact ttagaagaag gtcaaaaagt tactttcgaa atcactgaag gtcaacgtgg
      601 agaccaagca gttaacgtac aaactgttta atcttacaac ataaaacgac tcattataaa
      661 tgaatcgctt tgattaccaa caaggttcta aatcttgttg gtattttttt atgctatttt
      721 ggataatata aataatatga gacgatacca cgatgattta taaaaactta tttgccaaat
      781 acacactaag gaaaattatg aggctgagta taccaattac tgatataata gaaagcgcat
      841 ttgtcatcgt atttctagct ttagtcgttt gtacttcact aggatctttt ccattcataa
      901 aagcaacaat tcgatcgtag ttgtccattt tatgcacttt ttttaaatct tctattttca
      961 tagatgcata aaaacctatt cccaaaatga ttgccaccgt tacaccccaa gtccaattcc
     1021 aataaacaac taaaggtccc attaaaattg cagctaatgt catgaaaata agcatcacat
     1081 atgtccataa gttaagactt cgttgcgctt taatatcagg tacaaatgga atggtccctt
     1141 ttactaaatc atctaaagtt acattgaaca attcacacat cattaataag ttatgtatgt
     1201 ctggtaagct tttgtcattt tcccaattag aaatactctg cctagataca tataactttt
     1261 cagcaagata ttcttgtgaa taaccatctc gttccctata ctttttaatt tgtttactca
     1321 gattcaatta catacgcctc cagtcaatta gtacaatcat tacaatcaga ctatcagata
     1381 aagttaaatc aagtcacctt tatgattgac taaatgtttt gacatacgac aacatcgggg
     1441 ttcgaagact cccttaagac agacctgtat gattacgcgc ttgtaatttt ctcaatgcca
     1501 acttgaattt cacttattaa tgatgcaact tttccatgct attcaatgct tgcaaagtta
     1561 gtcctagtta agagattacg ttcacactat ttactattcg attttccagc tttccaacta
     1621 tgcttttcta atcttttttg tgctataaat tctaccgctt caaaaataca tactgcactg
     1681 atgaaccagc ttaggaaacc aacaacaatg ctaatcaacc acatgtgcgt catatgtaac
     1741 atcatccatg taactaaaat acaaactaat acccctgtca taccaaacac tgcgccacga
     1801 cttacatgca cagcgacttt atcaccatat tgcatacctg taataaacat agacactaaa
     1861 aatactgccg gaaacgttgc aaatataccg ccaaattctt tccaaggtag tgttacagat
     1921 acaatataac ttaataatac tgcaaatccc cccacaaaaa atttcattaa tgttaatttc
     1981 atgatgttct gcctccaata atttattact taataactga atacaactaa ttatcacgca
     2041 ttttccaaac tataaatgtc taatactgaa tattgcgagg gaaatgacaa accaacaaac
     2101 aactgtgaat attgcgcctt tccgataacc tttatgctta atgtagagag atgtcaaaaa
     2161 tacagttaat atacaagaca gaataccgac aattgctcca gtactaagat tcatcgacat
     2221 ctccactaat tgcgtaccac gatgatctaa agctaatgcg ataatagccg caagaaagac
     2281 tgccggcata gtagctataa tacctcctaa cttaccacct accttatcag caataattga
     2341 agctaatgca acagcgatac caccaatgac aaaatgaaga attgcacttc caattgaaaa
     2401 catcttcaac gtacctttct ataattaatt caatacaaaa cgtatcattc acacaaagtg
     2461 taaaacttaa attttctact gtaaaggcaa ctcaagcgat gttcataaag ctttcatgat
     2521 actttcataa actagcaata aagggttcaa atgaaagtat atccagctca aattagggag
     2581 tgggacagaa atgatatttt cgcaaaattt atttcgtcgt cccaccccag caaggttgac
     2641 tagaattgaa aaaagcttgt tacaagcgca ttttcgttca gtcaactact gccaatataa
     2701 cttcgtagag catagaacat tgatttatgt accagcctga tcaacatata aatataaatt
     2761 tttatgtttc acgtaaaaca aaaaaaaaga caaagctgtt atgatcttag ctttgtcttt
     2821 tatgtgttag tcatcatgta tacgacatcc tactactaac gtttatatat tcgaattttt
     2881 atttcataat aatcttcatg atctttgtct ttatgctcaa catgtaatcc tgtttgttga
     2941 atcgcttgga tacttttgcc tacctcatct cgtgcttgag tgacatcttg tgcaaagcga
     3001 aggttttgtg ctttgacttt ttcgggcccc gttttttggc gtactctatc ttcagtctgt
     3061 ttcacattta gcttttgtgc aatgacttgc tcaatcaacg cttcttgttc gctatcagac
     3121 aatgataata ccgctctcgc atgacgttca gtaattttac cttctcttaa gcgaagtagt
     3181 actttcggcg ccaacttcaa taaacgcaac ttatttgcaa taaagctttg acttttacct
     3241 aaactttttg ccaattcact ttgcgttgta tcaccaattt ccaataattt cttataggct
     3301 tccgcttctt caacaacaga caaattttct ctttgaatat tctcaattaa tgcaacaaca
     3361 gccgtctctt catcatccat atcacgaata ataacgtctg cttgaggtaa atttagtgat
     3421 tgtattgctc taaatcggcg ctctccagca ataatttcaa acatatcttc ttcaatcggt
     3481 cttacaacaa taggttgtag taaaccatgt tcatgtattg attcagcaag ttctttaatt
     3541 ttatttggtt caaacacctg tcttggttga taacggttgg gaacgatacg ttcaatttga
     3601 atggattcaa cattactatt gcgatcttct tcaatatgtc caatgatgtc atctttgttt
     3661 ttcaaaccaa ataattttga aaaaggtttt ttcattatcc attcgctcct tttatgttag
     3721 ttgtaaagga ttatgcatta tttttcaagt aaaggagtct tattaggcgt ccctggtttt
     3781 cttggatact ttttcggcgt ctgtcttttt ttatcaataa tgaacatctg gcgctctcca
     3841 gcatcttctg gcaattcaaa ggtatgtgtt tctgtaacat taccacctaa cacactaatt
     3901 gcaaattttg cttcttctaa ttcttcttca ccttttgaag attttaatgc aacaaactgt
     3961 ccaccttttt taactagcgg taaacacaat tcacttaaca cggataatct agctactgct
     4021 cttgcagtaa caacatcata agactccctg tagacaccct taccaaatgt ttctgctcta
     4081 tcgtgtataa agctgacatc ctgtaattgt aattctgacg ctaaatggtt taaaaattga
     4141 atacgcttat ttaatgaatc aacaatcgtc acttttaact gcggaaacat tatttttaac
     4201 ggaatacttg gaaaaccagc tccagcgcct acatcacata tacttatagg ctgattaaaa
     4261 tcaaaataaa aactaggtgc aatggaatca taaaaatgtt tcaaatatac atcgtgttca
     4321 tctgtaatac ttgtcaaatt catcttttca ttccattcaa caagtaaacg ataatatgtt
     4381 tgaaactgtt gtttttgagt ctcagttaat tgaatattat gttcttttaa ttgttctgct
     4441 aaccattcta cagtcattag tcactcaccc tttggagttt accttgttct aagtaaatca
     4501 ataatataga tatgtctgct ggatttaccc ctgatattct agaagcttgt gcaatattta
     4561 aaggttttac ttctgataat ttttctcgcg cttcagtcgc caaactatca atcttactat
     4621 aatctaagtc ttctggaatt ttcttctctt ccatacgctt aactttctca acttgttgta
     4681 gtgatttatt gatataacct tcatattttg tttgtatttc tacttgttct tcaacatctg
     4741 cattcaattg atgttcttct tctaaaagtt ctaaaattat atcgtaagtc atttcaggtc
     4801 tgcgtaataa atcgatagct aaaataccat cttttaagcg agaaccacca tgttgttcaa
     4861 taatcgcttg cgtatgttcg tttggtttaa tacgaatatc tgataaacgc ttaatttccg
     4921 catcaatttg ctgacgtttt tcattaaaac gtgcatatct ttcttcagaa atcataccaa
     4981 gttcatatcc catatccgtc aatctcaaat cagcattatc atgacgtagt aacaaacgat
     5041 attctgcacg tgatgttagt aaacgataag gttcattagt acctttagtt acaagatcat
     5101 cgattaagac accaatatat gcatctgaac gacttaatat cttttcgcct gtgtttaaca
     5161 ctttacctgc agcgttaata cctgccatca atccttgtcc tgctgcttct tcataaccag
     5221 atgtaccatt aatttgacct gcagtatata agtttttaat cattttcgtt tcaagtgtag
     5281 gccataactg cgttggcaca atcgcatcat attcaattgc gtagccggca cgcatcatat
     5341 ctgctttttc aagacctggt atcgtctcta acatttgacg ttgcacatgt tcaggaagac
     5401 ttgtagacaa tccttgcaca tatacttcat ttgtattacg accttcaggc tctaagaaaa
     5461 gttgatgtcg cggcttatca ttaaatcgaa caaatttatc ttcaattgaa gggcaataac
     5521 gtggcccggt tcctttaatc atccctgaat acattgcaga tagatgtaaa ttatcatcga
     5581 taactttgtg tgtttcagca ttagtatacg ttagccaaca tggcaattga tctaatatat
     5641 attctgttgt ttcaaagctg aatgcacgac ctacatcgtc acctggttgt atttcagtct
     5701 tcgaatagtc aattgttttt gaatttacac gcggtggtgt acctgtttta aaacgaacaa
     5761 tatcaaaacc aagttctctt aaattgtctg ataatgtgat tgatggtaat tggtgatttg
     5821 gtccacttga atacttcata ttacctaaaa tgatttcacc acgtaaaaat gttcccgttg
     5881 taataattac tgctttagat aaatactctg taccaatatt tgtacgtaca cctttaactt
     5941 cattatcttc tataataagt tcgtctacca taccttgcat tatatgcaaa ttttcttcat
     6001 cttcaatcac gcgtttcatt tcttgttgat aaagtacttt atctgcttgc gctcttagtg
     6061 ctcttacagc aggtccttta cctgtattta acattctcat ttgaatgtgt gttttatcga
     6121 ttgtttttgc catttgtcca cctaaagcat caatttcacg aacaacgata cctttagctg
     6181 gtccacctac agatgggtta catggcataa atgcaatatt atctaaattt attgttagca
     6241 ttaatgtttt agcaccacgt cttgcagatg ctaaacctgc ttctacacct gcatgtcccg
     6301 cacctataac gattacatca tattcttgaa ccacaatata aacctcctta tttgatatct
     6361 tactagcctt cttaagacgg tattccgtct atttcaatta ctatttacct aagcagaatt
     6421 gactgaataa ctgatcgatg agttcatcac ttgcagtctc accaataatt tctcctaata
     6481 tttcccaagt tctagttaaa tcaatttgta ccatatccat aggcacacca gattctgctg
     6541 catcaatcgc atcttgtatc gtttgtcttg cttgttttaa taatgaaata tgtcttgaat
     6601 tagaaacata agtcatatct tgattttgta cttctccacc aaagaacaaa tctcgaattt
     6661 gtatttctaa ttcatcaata ccttcttgtt ttaacattga agtttgaatt aatggcgtat
     6721 cacctatcat atctttaact tcattaatat ctatgttttg ctctaaatcc attttattaa
     6781 caattacgat tacatcttca tttttaacca cttcatataa tgtgtaatct tcttgagtca
     6841 atgcttcgtt attgtttaat acaaataaaa ttaagtctgc ttggctaaga gcctttctag
     6901 agcgttcaac accaatcttc tctactatat cttctgtctc acgtatacca gcagtatcaa
     6961 ctaatcttaa tggcacgcca cgaacattga cgtactcttc taagacatct ctagtagtac
     7021 ctgctacctc agttacaatc gctttattat cttgtattaa attatttaac atcgatgatt
     7081 tacctacgtt tggtttacca acaataactg tagataaacc ttcacgcata attttaccct
     7141 gcgcaccggt atctaataaa cgattaattt cctgtttgat ttctttagac tgctctaaaa
     7201 gaaattcagt agtcgcatct tcaacatcat cgtattcagg ataatcaata ttcacttcca
     7261 cttgagcgag tatctctaat atagattgac gttgtttttt gattaagtca cttagacgac
     7321 cttcaatttg attcatcgca actttagaag ctctatctgt cttcgagcga ataaagtcca
     7381 taactgcttc agcttgagat aaatcaatac gaccatttaa aaaggcacgt tttgtaaatt
     7441 cacctggctc agccattcta gcgccatatg tcatagtaag ttccagcact ctattaatcg
     7501 ttaaaatacc accatgacaa ttaatttcta taatatcttc gcgtgtaaat gtttttggcg
     7561 ctcttaacac agacaccata acttcttcaa tcacttcttt agactctgga tcaataatat
     7621 gaccgtaatt aatcgtatgt gatggaacat catttaaaag atgttttcct ttatataatt
     7681 tgtcagcaat ttcaacggct tgcggtccag acaatcgaac aattccaatt gccccttcac
     7741 ccattggtgt tgaaatactc gtaattgtat ctaaatccat attgctactc gcctccttca
     7801 acgatgtgaa tacattttaa agtaagttat tataacccta aggtcagtct tacgtttgtc
     7861 tgaggtaaga cttcgggatg tgttgagtgg ttaatgtttt ccttccccta ccctatcctt
     7921 acttaatctt tttattaaaa actttggcaa ttttaagtac gtgctcaaga ctattctgta
     7981 tttgtaaagt cgtcatatct ttagctggct gtcttgctat tacaataata tctttggcca
     8041 atatatgcga cttatgtact ttgaaatttt cacgtattgc tcttttaatc ttgtttctta
     8101 acactgcatt acctagtttt ttagaaacac taatacctaa gcgaaaatgg tctatttctt
     8161 tattattaca agtgtataca acaaattgtc tgttggctac agaatgacct tttttatata
     8221 ttctctgaaa atctgcattc tttttaattc ggtaagcttt ttccaataac atcactcgct
     8281 tatttatcgt ttttatttga agctatattt aaacttctat tgagcttata acataaattt
     8341 ctatttattc ttaatttaaa cgaaaaaaaa gatcactgat gagtcagtga tcttatgcag
     8401 ataaaacttt acggccttta cgacgacggc gcgctaaaac tttacggcca ttttttgtgc
     8461 tcatgcgttt tctgaaacca tgaactttac tatgtttacg tttatttggt tgataagtac
     8521 gttttaccat gcaaaacacc tccatcttta tacagttatc taatatacca gattatgcag
     8581 actctgatca ctttaataga taagattttg cgtttcttag attaaaattc tcgtattagc
     8641 tcattgatta tctagtcata attcaagcaa ctactacaat ataacaaaat cctatttata
     8701 acgcaagttc attttatact actgctcaat ttttttactt ttatcgatta aagatagaaa
     8761 tacacgatgc gagcaatcaa atttcataac atcaccatga gtttggtccg aagcatgagt
     8821 gtttacaatg ttcgaacacc ttatacagtt cttatacata ctttataaat tatttcccaa
     8881 actgttttga tacactcact aacagatact ctatagaagg aaaagttatc cacttatgca
     8941 catttatagt tttcagaatt gtggataatt agaaattaca cacaaagtta tactattttt
     9001 agcaacatat tcacaggtat ttgacatata gaggactgaa aaagtataat tgtgtggata
     9061 agtcgtccaa ctcatgattt tataaggatt tatttattga tttttacata aaaatactgt
     9121 gcataactaa taagcaagat aaagttatcc accgattgtt attaacttgt ggataattat
     9181 taacatggtg tgtttagaag ttatccacgg ctgttatttt tgtgtataac ttaaaaattt
     9241 aagaaagatg gagtaaattt atgtcggaaa aagaaatttg ggaaaaagtg cttgaaattg
     9301 ctcaagaaaa attatcagct gtaagttact caactttcct aaaagatact gagctttaca
     9361 cgattaaaga tggtgaagct atcgtattat cgagtattcc ttttaatgca aattggttaa
     9421 atcaacaata tgctgaaatt atccaagcaa tcttatttga tgttgtaggc tatgaagtta
     9481 aacctcactt tattactact gaagaattag caaattatag taataatgaa actgctactc
     9541 caaaagaaac aacaaaacct tctactgaaa caactgagga taatcatgtg cttggtagag
     9601 agcaattcaa tgcccataac acatttgaca cttttgtaat cggacccggt aaccgctttc
     9661 cacatgcagc gagtttagct gtggccgaag caccagccaa agcgtacaat ccattattta
     9721 tctatggagg tgttggttta ggaaaaaccc atttaatgca tgccattggt catcatgttt
     9781 tagataataa tccagatgcc aaagtgattt acacatcaag tgaaaaattc acaaatgaat
     9841 ttattaaatc aattcgtgat aacgaaggtg aagctttcag agaaagatat cgtaatatcg
     9901 acgtcttatt aatcgatgat attcagttca tacaaaacaa ggtacaaaca caagaagaat
     9961 ttttctatac ttttaatgaa ttgcatcaga ataacaagca aatagttatt tcgagtgatc
    10021 gaccaccaaa ggaaattgca caattagaag accgattacg ttcacgcttt gaatgggggc
    10081 taattgttga tattacgcca ccagattatg aaactcgaat ggcaattttg cagaagaaaa
    10141 ttgaagaaga aaaattagat attccaccag aagctttaaa ttatatagca aatcaaattc
    10201 aatctaatat tcgtgaatta gaaggtgcat taacacgttt acttgcatat tcacaattat
    10261 taggaaaacc aattacaact gaattaactg ctgaagcttt aaaagatatc attcaagcac
    10321 caaaatctaa aaagattacc atccaagata ttcaaaaaat tgtaggccag tactataatg
    10381 ttagaattga agatttcagt gcaaaaaaac gtacaaagtc aattgcatat ccgcgtcaaa
    10441 tagctatgta cttgtctaga gagcttacag atttctcatt acctaaaatt ggtgaagaat
    10501 ttggtgggcg tgatcatacg accgtcattc atgctcatga aaaaatatct aaagatttaa
    10561 aagaagatcc tatttttaaa caagaagtag agaatcttga aaaagaaata agaaatgtat
    10621 aagtaggaaa ctttgggaaa tgtaatctgt tatataacag cactaatgat aacaatcatt
    10681 ttttacattt ctatatgcta atgtggcaag atgagcaaaa ctcattttgt ggataatgtt
    10741 taaaagtcat acacaccata cacaagttat caacatgtgt ataacttcgc caaatctatg
    10801 tttttaagac ttatccacca atccacagca cctactacta ttactaagaa cttaaaacct
    10861 atataattat atataaacga ctggaaggag ttttaattaa tgatggaatt cactattaaa
    10921 agagattatt ttattacaca attaaatgac acattaaaag ctatttcacc aagaacaaca
    10981 ttacctatat taactggtat caaaatcgat gcgaaagaac atgaagttat attaactggt
    11041 tcagactctg aaatttcaat agaaatcact attcctaaaa ctgtagatgg cgaagatatt
    11101 gtcaatattt cagaaacagg ctcagtagta cttcctggac gattctttgt tgatattata
    11161 aaaaaattac ctggtaaaga tgttaaatta tctacaaatg aacaattcca gacattaatt
    11221 acatcaggtc attctgaatt taatttaagt ggcttagatc cagatcaata tcctttatta
    11281 cctcaagttt ctagagatga cgcaattcaa ttgtcggtaa aagtgcttaa aaacgtgatt
    11341 gcacaaacaa attttgcagt gtccacctca gaaacacgcc cagtactaac tggtgtgaac
    11401 tggcttatac aagaaaatga attaatatgc acagcgactg actcacaccg cttggctgta
    11461 agaaagttgc agttagaaga tgtttctgaa aacaaaaatg tcatcattcc aggtaaggct
    11521 ttagctgaat taaataaaat tatgtctgac aatgaagaag acattgatat cttctttgct
    11581 tcaaaccaag ttttatttaa agttggaaat gtgaacttta tttctcgatt attagaagga
    11641 cattatcctg atacaacacg tttattccct gaaaactatg aaattaaatt aagtatagac
    11701 aatggggagt tttatcatgc gattgatcgt gcctctttat tagcgcgtga aggtggtaat
    11761 aacgttatta aattaagtac aggtgatgac gttgttgaat tgtcttctac atcaccagaa
    11821 attggtactg taaaagaaga agttgatgca aacgatgttg aaggtggtag cctgaaaatt
    11881 tcattcaact ctaaatatat gatggatgct ttaaaagcaa tcgataatga tgaggttgaa
    11941 gttgaattct tcggtacaat gaaaccattt attctaaaac caaaaggtga cgactcggta
    12001 acgcaattaa ttttaccaat cagaacttac taaaaataaa tataaataaa ggatgacgtg
    12061 attaattaaa acgtcatcct ttattttttg gcaaaaataa ttctaggtgc gtatgtaaaa
    12121 taaatttggc agcattttaa acagcaaata aaagacgcca attaaattta tgacaaatgt
    12181 atccaaaatt taataagtgt gcttatatgc cctttaaatt taaaatttta atagtcaata
    12241 acaagttgaa tataaaagtt aaacgccgtt aaatagcgtt aaaaaattga aaatgacagt
    12301 attgccaaaa aataagaatt aattatttat atgtaaacgg tttctacctc tattttaaat
    12361 gaaatttgtg acaaaaaaag gtataatata ttaatgacat acaaagaaat ggagtgatta
    12421 ttttggttca agaagttgta gtagaaggag acattaattt aggtcaattt ctaaaaacag
    12481 aagggattat tgaatctggt ggtcaagcaa aatggttctt gcaagacgtt gaagtattaa
    12541 ttaatggagt gcgtgaaaca cgtcgcggta aaaagttaga acatcaagat cgtatagata
    12601 tcccagaatt acctgaagat gctggttctt tcttaatcat tcatcaaggt gaacaatgaa
    12661 gttaaataca ctccaattag aaaattatcg taactatgat gaggttacgt tgaaatgtca
    12721 tcctgacgtg aatatcctca ttggagaaaa tgcacaagga aagacaaatt tacttgaatc
    12781 aatttatacc ttagctttag caaaaagtca tagaacgagt aatgataagg aactcatacg
    12841 ttttaatgct gattatgcta aaatagaagg tgagcttagt tatagacacg gcacgatgcc
    12901 attaacaatg tttataacta aaaaaggtaa acaagtcaaa gtgaatcact tagagcaaag
    12961 tcgtctaact caatatattg gacacctcaa tgtggttcta tttgcgccag aagatttgaa
    13021 tattgtaaaa ggctctcctc aaataagacg acgctttata gatatggagt tgggccaaat
    13081 ttctgctgtt tacttaaatg atttagctca ataccaacgt attttaaagc aaaagaataa
    13141 ttacttaaag cagttacaat taggccaaaa aaaggactta acaatgttgg aagtattaaa
    13201 tcagcagttt gctgaatatg caatgaaagt aactgataaa cgtgcacatt ttattcaaga
    13261 gctagagtcg ttagctaaac cgattcatgc tggtatcaca aatgataaag aagcgttgtc
    13321 gctgaattat ttacctagtc ttaaatttga ttatgctcaa aatgaagcgg cacgacttga
    13381 agaaattatg tctattctta gcgataatat gcaaagagaa aaagaacgag gcattagctt
    13441 attcggacca catcgagatg atataagttt tgatgtgaat ggcatggatg ctcaaacata
    13501 tggttctcaa ggacagcaac gtacaacggc tttgtccatt aaattagctg aaattgagtt
    13561 aatgaatatc gaagttgggg aatatcccat cttattatta gacgatgtac tcagtgaatt
    13621 agatgattcg cgtcaaacgc atttattaag tacgattcag cataaagtac aaacatttgt
    13681 cactacgaca tctgtagatg gtattgatca tgaaatcatg aataacgcta aattgtatcg
    13741 tattaatcaa ggtgaaatta taaagtaaca gaaagcgatg gtgactgcat tgtcagatgt
    13801 aaacaacacg gataattatg gtgctgggca aatacaagta ttagaaggtt tagaagcagt
    13861 acgtaaaaga ccaggtatgt atataggatc gacttcagag agaggtttgc accatttagt
    13921 gtgggaaatt gtcgataata gtatcgatga agcattagct ggttatgcaa atcaaattga
    13981 agttgttatt gaaaaagata actggattaa agtaacggat aacggacgtg gtatcccagt
    14041 tgatattcaa gaaaaaatgg gacgtccagc tgtcgaagtt attttaactg ttttacatgc
    14101 tggtggtaaa tttggcggtg gcggatacaa agtatctggt ggtttacatg gtgttggttc
    14161 atcagttgta aacgcattgt cacaagactt agaagtatat gtacacagaa atgagactat
    14221 atatcatcaa gcatataaaa aaggtgtacc tcaatttgac ttaaaagaag ttggcacaac
    14281 tgataagaca ggtactgtca ttcgttttaa agcagatgga gaaatcttca cagagacaac
    14341 tgtatacaac tatgaaacat tacagcagcg tattagagag cttgctttct taaacaaagg
    14401 aattcaaatc acattaagag atgaacgtga tgaagaaaac gttagagaag actcctatca
    14461 ctatgagggc ggtattaaat cgtacgttga gttattgaac gaaaataaag aacctattca
    14521 tgatgagcca atttatattc atcaatctaa agatgatatt gaagtagaaa ttgcgattca
    14581 atataactca ggatatgcca caaatctttt aacttacgca aataacattc atacgtatga
    14641 aggtggtacg catgaagacg gattcaaacg tgcattaacg cgtgtcttaa atagttatgg
    14701 tttaagtagc aagattatga aagaagaaaa agatagactt tctggtgaag atacacgtga
    14761 aggtatgaca gcaattatat ctatcaaaca tggtgatcct caattcgaag gtcaaacgaa
    14821 gacaaaatta ggtaattctg aagtgcgtca agttgtagat aaattattct cagagcactt
    14881 tgaacgattt ttatatgaaa atccacaagt cgcacgtaca gtggttgaaa aaggtattat
    14941 ggcggcacgt gcacgtgttg ctgcgaaaaa agcgcgtgaa gtaacacgtc gtaaatcagc
    15001 gttagatgta gcaagccttc caggtaaatt agccgattgc tctagtaaaa gtcctgaaga
    15061 atgtgagatt ttcttagtcg aaggggactc tgccgggggg tctacaaaat ctggtcgtga
    15121 ctctagaacg caggcgattt taccattacg aggtaagata ttaaatgttg aaaaagcacg
    15181 attagataga attttgaata acaatgaaat tcgtcaaatg atcacagcat ttggtacagg
    15241 aatcggtggc gactttgatc tagcgaaagc aagatatcac aaaatcgtca ttatgactga
    15301 tgccgatgtg gatggagcgc atattagaac attgttatta acattcttct atcgatttat
    15361 gagaccgtta attgaagcag gctatgtgta tattgcacag ccaccgttgt ataaactgac
    15421 acaaggtaaa caaaagtatt atgtatacaa tgatagggaa cttgataaac ttaaatctga
    15481 attgaatcca acaccaaaat ggtctattgc acgatacaaa ggtcttggag aaatgaatgc
    15541 agatcaatta tgggaaacaa caatgaaccc tgagcaccgc gctcttttac aagtaaaact
    15601 tgaagatgcg attgaagcgg accaaacatt tgaaatgtta atgggtgacg ttgtagaaaa
    15661 ccgtagacaa tttatagaag ataatgcagt ttatgcaaac ttagacttct aagcgctgtg
    15721 aactgaactt ttgaaggagg aactcttgat ggctgaatta cctcaatcaa gaataaatga
    15781 acgaaatatt accagtgaaa tgcgtgaatc atttttagat tatgcgatga gtgttatcgt
    15841 tgctcgtgca ttgccagatg ttcgtgacgg tttaaaacca gtacatcgtc gtatactata
    15901 tggattaaat gaacaaggta tgacaccgga taaatcatat aaaaaatcag cacgtatcgt
    15961 tggtgacgta atgggtaaat atcaccctca tggtgactta tctatttatg aagcaatggt
    16021 acgtatggct caagatttca gttatcgtta tccgcttgtt gatggccaag gtaactttgg
    16081 ttcaatggat ggagatggcg cagcagcaat gcgttatact gaagcgcgta tgactaaaat
    16141 cacacttgaa ctgttacgtg atattaataa agatacaata gattttatcg ataactatga
    16201 tggtaatgaa agagagccgt cagtcttacc tgctcgattc cctaacttat tagccaatgg
    16261 tgcatcaggt atcgcggtag gtatggcaac gaatattcca ccacataact taacagaatt
    16321 aatcaatggt gtacttagct taagtaagaa ccctgatatt tcaattgctg agttaatgga
    16381 ggatattgaa ggtcctgatt tcccaactgc tggacttatt ttaggtaaga gtggtattag
    16441 acgtgcatat gaaacaggtc gtggttcaat tcaaatgcgt tctcgtgcag ttattgaaga
    16501 acgtggaggc ggacgtcaac gtattgttgt cactgaaatt cctttccaag tgaataaggc
    16561 tcgtatgatt gaaaaaattg cagagctcgt tcgtgacaag aaaattgacg gtatcactga
    16621 tttacgtgat gaaacaagtt tacgtactgg tgtgcgtgtc gttattgatg tgcgtaagga
    16681 tgcaaatgct agtgtcattt taaataactt atacaaacaa acacctcttc aaacatcatt
    16741 tggtgtgaat atgattgcac ttgtaaatgg tagaccgaag cttattaatt taaaagaagc
    16801 gttggtacat tatttagagc atcaaaagac agttgttaga agacgtacgc aatacaactt
    16861 acgtaaagct aaagatcgtg cccacatttt agaaggatta cgtatcgcac ttgaccatat
    16921 cgatgaaatt atttcaacga ttcgtgagtc agatacagat aaagttgcaa tggaaagctt
    16981 gcaacaacgc ttcaaacttt ctgaaaaaca agctcaagct attttagaca tgcgtttaag
    17041 acgtctaaca ggtttagaga gagacaaaat tgaagctgaa tataatgagt tattaaatta
    17101 tattagtgaa ttagaagcaa tcttagctga tgaagaagtg ttattacagt tagttagaga
    17161 tgaattgact gaaattagag atcgtttcgg tgatgatcgt cgtacagaaa ttcaattagg
    17221 tggatttgaa aacttagagg acgaagactt aattccagaa gaacaaatag taattacact
    17281 aagccataat aactacatta aacgtttgcc ggtatctaca tatcgtgctc aaaaccgtgg
    17341 tggtcgtggt gttcaaggta tgaatacatt ggaagaagat tttgtcagtc aattggtaac
    17401 tttaagtaca catgaccatg tattgttctt tactaacaaa ggtcgtgtat acaaacttaa
    17461 aggttacgaa gtgcctgagt tatcaagaca gtctaaaggt attcctgtag tgaatgctat
    17521 tgaacttgaa aatgatgaag tcattagtac aatgattgct gttaaagacc ttgaaagtga
    17581 agacaacttc ttagtgtttg caactaaacg tggtgtcgtt aaacgttcag cattaagtaa
    17641 cttctcaaga ataaatagaa atggtaagat tgcgatttcg ttcagagaag atgatgagtt
    17701 aattgcagtt cgcttaacaa gtggtcaaga agatatcttg attggtacat cacatgcatc
    17761 attaattcga ttccctgaat caacattacg tcctttaggc cgtacagcaa cgggtgtgaa
    17821 aggtattaca cttcgtgaag gtgacgaagt tgtagggctt gatgtagctc atgcaaacag
    17881 tgttgatgaa gtattagtag ttactgaaaa tggttatggt aaacgtacgc cagttaatga
    17941 ctatcgctta tcaaatcgtg gtggtaaagg tattaaaaca gctacgatta ctgagcgtaa
    18001 tggtaatgtt gtatgtatca ctacagtaac tggtgaagaa gatttaatga ttgttactaa
    18061 tgcaggtgtc attattcgac tagatgttgc agatatttct caaaatggtc gtgcagcaca
    18121 aggtgttcgc ttaattcgct taggtgatga tcaatttgtt tcaacggttg ctaaagtaaa
    18181 agaagatgca gaagatgaaa cgaatgaaga tgagcaatct acttcaactg tatctgaaga
    18241 tggtactgaa caacaacgtg aagcggttgt aaatgatgaa acaccaggaa atgcaattca
    18301 tactgaagtg attgattcag aagaaaatga tgaagatgga cgtattgaag taagacaaga
    18361 tttcatggat cgtgttgaag aagatataca acaatcatca gatgaagaat aataaaaaat
    18421 aagacttccc tatatgtagg ggagtcttat ttttatgcta gaaagtaatg ctttactata
    18481 ttcaatgatt agtaatgact aactttctaa ttgtttcatt gcgtaaggta tttcattgat
    18541 aagtcttgat ggtggcacca catacatatc ttttgcaagg ttttcgccaa taaaactatg
    18601 tgtatatgtg gcactcataa ccgcttcttt taagttatca aattgaccga caaagcttgt
    18661 aatcatacca gcaagtgtat cgcccatacc accagtcgcc attgctgggc taccgattgt
    18721 caatttaaag tcttcatctt taaagaaaat ttcagtacca tgttttttaa gtacaacagt
    18781 tgcacctaaa cgatcaactg cttcacgatt acgctcatat gtctgttcct caataggaat
    18841 accacttaat cgttcccatt ctttgaggtg tggtgtaaag atcacacgac atgtaggtaa
    18901 ttgcggtttc agtttactaa agattgtaat cgcatcgccg tctacgatta aattttgatg
    18961 cggttgtata ttttgtagta ggaatgtaat ggcattattt cctttgaaat caacgccaag
    19021 acctggacca attagtatac tgtcagtcat ttcaatcatt ttcgtcaaca ttttcgtatc
    19081 attaatatca ataaccatcg cttctgggca acgagaatgt aatgctgaat gatttgttgg
    19141 atgtgtagct acagtgatta aaccactacc gctaaataca catgcacgag ccgctaacat
    19201 aatggcacca cctaagttag cagatccacc aattaataaa attttgccat aatcaccttt
    19261 atgtgaatct tctttacgct taggaatgtt aatagaattt aacgtttcca tagtgatata
    19321 acctcccatg taaaagcctt ttccgaattt attcaatttt aaaaatatat agtaactttt
    19381 aacaaaatgt attataaatt tctgaattca ttattatttg tcgttaaata caatagaaaa
    19441 tactatacct gtatatgcaa ttcgtcaata gataaattat taaatatgct tacaacaatc
    19501 ttaatatcct ttaacgcact acaatagtgc tctgataata ggttataaat gtacgtaaaa
    19561 ccattgtttc aataaaaatg aaaacgtata cttcaagaag gatgggttac ttaatataaa
    19621 caagggggta acatatatga ctttatattt agatggtgaa acactaacaa ttgaggatat
    19681 taaatcattt ttacaacaac aatcaaagat tgaaattatt gatgatgcgt tagaacgtgt
    19741 caaaaaaagt agagcggtag ttgaacgtat tattgaaaat gaggaaacgg tttacggtat
    19801 tactacaggt tttgggttat ttagtgatgt acgtatagac ccgacgcaat ataatgaatt
    19861 acaagtgaat ctgatacgct cacatgcctg tggactaggt gagccatttt caaaagaagt
    19921 agcattagtc atgatgattt tacgattgaa tacattatta aaaggtcatt caggtgccac
    19981 tttagaatta gtgagacaat tacaattttt tataaatgaa cgtattatac cgataatccc
    20041 acagcaaggc tctctcggtg catcaggaga tttagcgcca ttatcacatt tagcattagc
    20101 attaattggt gaagggaaag tattgtacag aggggaagaa aaggatagtg acgatgtatt
    20161 aagagaatta aatagacaac ctttgaacct tcaggctaaa gaaggtttag cattgattaa
    20221 tggtacgcaa gctatgacag ctcaaggtgt cattagttat atagaagcag aagatttagg
    20281 ttaccaatct gaatggattg ctgcattaac gcatcagtct cttaatggca ttatagatgc
    20341 atatcgacat gatgtgcacg cagttcgtaa ttttcaagaa cagattaatg tggcagcgcg
    20401 tatgcgtgat tggttagaag gatcaacatt aacgacgcga caatcagaaa tacgtgtaca
    20461 agatgcatat acgttgcgtt gtataccaca aatccatggc gcgagttttc aagtattcaa
    20521 ttatgttaaa cagcaattag aatttgaaat gaatgcggct aatgataatc cacttatatt
    20581 tgaggaagca aatgaaacgt ttgttatttc aggtggtaac ttccatggac aacctattgc
    20641 ttttgcatta gatcatctta aattaggtgt aagtgaatta gcaaacgtat cggaacgtcg
    20701 tctagagcga ctagtaaatc ctcaattaaa tggtgattta ccagcatttc ttagtccaga
    20761 gccaggattg caaagtggcg cgatgattat gcaatatgct gctgcaagtc tcgtttctga
    20821 aaataaaact ttagcgcatc cagcgagtgt tgattctatc acttcatctg cgaaccaaga
    20881 agatcacgta tctatgggaa ctacagctgc tagacatggt tatcaaatta ttgaaaatgc
    20941 aagacgtgtg ctggcaatcg aatgtgttat tgcattacaa gcagcagagt taaaaggtgt
    21001 tgaaggatta tcaccaaaaa cacgtcgcaa gtatgatgag tttcgaagta tcgtgccatc
    21061 cattacacat gatcgtcaat ttcataaaga tattgaagcg gttgcacagt atttaaagca
    21121 atcaatttat caaacgactg catgtcacta aatcgacatg agtgatgttt gaaatcgtta
    21181 cttgaaaaag caaatatagt ttgctatatt aaaaataact taataagaca ttgttcgtag
    21241 gacaagtaat atatagtgtt cgatatcaga gagcttgtgg ttagtgtgaa caagaatcaa
    21301 catatatatg aatctaccta cttaatttaa aagaacaatc ggtgataacc gttattttag
    21361 tgaagtgcaa tttaggttta gtgtatcttt ataacttaaa ttgttaaata gggtggcaac
    21421 gcgtagacca cgtcccttgt agggatgtgg tcttttttta ttttctaaaa aataaagacg
    21481 tacgtcattc cataataaat gataattatt tgggaaagga tgaaggttaa tgttagacat
    21541 tagattattc agaaatgagc ctgacacagt taagagcaaa attgaattac gtggagatga
    21601 tccaaaagtt gtagatgaaa ttttagaatt ggatgagcaa cgacgtaaat taattagtgc
    21661 aacagaagaa atgaaagcac gtcgtaataa agtaagcgaa gaaatcgcat taaaaaaacg
    21721 taataaagaa aatgctgatg atgtgattgc tgaaatgcgc acattaggtg acgatattaa
    21781 agaaaaagat agtcaattaa atgaaattga taataaaatg acaggtatcc tttgtcgtat
    21841 tccaaattta ataagtgatg atgtacctca aggtgaatct gatgaagata acgttgaagt
    21901 taaaaagtgg ggtacaccac gtgagttttc atttgaaccc aaagcacatt gggatattgt
    21961 agaagaattg aaaatggctg attttgatcg tgcagcaaaa gtttcaggtg cgcgttttgt
    22021 atatttaaca aatgaaggtg cgcaattaga gcgtgcttta atgaactata tgattacaaa
    22081 acatacaaca caacatggtt atacagaaat gatggtacca cagcttgtga acgcagatac
    22141 aatgtatggt acaggtcaat tacctaaatt tgaagaagat ttatttaaag tagaaaaaga
    22201 aggattatat acaattccaa ctgctgaagt accattaacg aatttctacc gtaatgaaat
    22261 tattcaacca ggtgtacttc ctgaaaaatt cactggtcaa tctgcatgtt tccgtagtga
    22321 agcaggatca gcaggtagag atacaagagg attaattcgt ttacatcaat tcgataaagt
    22381 ggaaatggta cgttttgaac aacctgaaga ttcatggaat gctttagaag aaatgacaac
    22441 aaacgcagaa gcaattctag aagagttagg tttaccatac cgtcgtgtta ttttatgtac
    22501 aggtgatatt ggatttagtg caagcaaaac atatgattta gaagtttggt taccaagcta
    22561 caatgattat aaagaaatta gttcatgctc aaactgtacg gatttccaag cgcgtcgtgc
    22621 taacatccgc ttcaagcgtg acaaagcagc taaaccagaa ttagcacata cattaaatgg
    22681 tagtggttta gcagttggac gtacatttgc tgctattgtt gaaaattacc aaaatgaaga
    22741 tggaacagta acaattccag aagcattagt accatttatg ggtggtaaaa cacaaatttc
    22801 aaaaccagtt aaataaaggc tttagctaca agctttaaaa agtatatatc tacgtatact
    22861 taaagcaagg gcaagatact ttaaataata ttttaaaaag tggtgacgaa gctgtcgcca
    22921 ctttttttgt gctgtaaaag tataatagtg agccaatgca cataacaaca ataaattaag
    22981 tttgtggttt aatggggtga acgcatttca ttatagcaac aatacgggat aattatgatg
    23041 aactaaaaca atctaaaacg taacaagttt gagcatcacc aatataggaa aggaagcgat
    23101 aaaatactga tttcgttgat atgtagtatg agttatatcg atggagtagg gtagggggag
    23161 gggatgatta taagggagtg gtacatgaat caatatccca gactcatcat cagatataaa
    23221 aatttataaa attgatactt aaaaacaact acaaatccat agaaaatatg gaggtagtct
    23281 taaataaaaa attgaaaatt ctcaaaaata aaaagttaat atgaagctga ctaaagactc
    23341 cggtatgtct aacctcagac aaactgatgt ctaatgttat tgcttagggt atagaactgt
    23401 attagactag gtatattatt ttttcgtaat tatataaata taaagtggca aaggaggtaa
    23461 ttgagatgac aacacattta agttttagac aaggcgtgca agagtgtatc ccaacattat
    23521 tgggttatgc cggtgttggt atttcatttg gtattgtggc ttcgtctcaa aactttagta
    23581 ttttagaaat tgtcttgtta tgtcttgtta tatatgccgg tgctgcgcaa tttattatgt
    23641 gcgcgttgtt tatagcaggt acacctatat cagcgattgt actaactgta tttatcgtaa
    23701 attcaagaat gttcctttta agtatgtcgc ttgcaccaaa cttcaagaca tatgggtttt
    23761 ggaaccgtgt tggattaggt tcattagtaa ctgacgaaac gtttggcgtc gccattacac
    23821 cttatttaaa aggagaagct atcaatgatc gttggatgca tggtcttaac atcacagcat
    23881 atttattttg ggcaatttca tgtgtagctg gggctttatt tggcgaatat atctcaaatc
    23941 cgcaaacgct agggttagat tttgctatca cggctatgtt tatctttttg gccattgcgc
    24001 aatttgaatc aattactaaa tcgcgattaa gaatttacat agtactcatt attgccgtca
    24061 tagtaatgat gttatcgcta agtatgttta tgccttcata tctagcaata ttaattgcag
    24121 ccacaatttc agcagcgtta ggagtgatga tggaacaatg ataactcata tgaacatgtt
    24181 aatacttatt ttattgtgtg gtatcgtaac gctattaatt cgaattatac cttttatcat
    24241 gatttcaaaa gtgcaattgc ctgatgtcgt ggttcgatgg ctatcattta tcccaatcac
    24301 actatttacg gcacttgtca ttgacagcat tattcaacag acgcctcatg gtgaggggta
    24361 tacattaaac atcccttaca ttatcgcgct cattccgacg gttattttat ctataatcac
    24421 gcgtagttta actattacaa ttattagtgg gattgttatc atggcagcat tacgattttt
    24481 cttttaaaaa taactgaaaa tcattgaaca gatatttaaa cttaggtaaa ctgttagtaa
    24541 tcagaaaatt ctgatataca aatcgtctat gttaagattg ggaatcgtgt atacgtaagc
    24601 gatttggcta acgcatgaca atgataacaa cattttaaat gataaaagta attcatcact
    24661 gaatctcaac taacacataa caatttcata tttcttattg tgagaagttg agggacttgg
    24721 ccctgtgata cttcagcaac cgactttata gcacggtgct aaaaccaacg agttactcga
    24781 atgataagta taaagacttc ttacttttca atagggtgag aagttttttt gtttaaggag
    24841 gaaagaacaa tgacaaatta cacagtagat actttaaatt taggggaatt tattacagaa
    24901 tctggggaag tcatagataa cttgcgtttg agatatgagc atgtcggtta tcatggacaa
    24961 ccattagttg tagtttgtca tgcattaact ggcaatcatt taacatatgg aacagatgat
    25021 tatccgggtt ggtggcgaga aattattgat gggggatata tacccattca cgattatcaa
    25081 tttttaacat ttgatgttat tggtagtcct ttcggttcaa gttcaccttt aaacgaccct
    25141 cattttccta aaaaattaac attaagagat atagtcagag cgaatgaacg aggtatacaa
    25201 gcccttggtt atgataagat taatatttta atagggggaa gtcttggagg tatgcaagca
    25261 atggaactac tctacaatca acagtttgaa gtagataaag ccattatcct tgctgcaaca
    25321 agtcgaacat catcttatag tagagctttc aatgaaattg caaggcaagc cattcatctt
    25381 ggtggtaagg aaggtctaag tattgcacgc caattaggtt ttttgacata tcgatcatca
    25441 aaaagttatg atgaacgttt cacgccggat gaagtagtcg cataccaaca acatcaaggt
    25501 aataaattta aagaacattt tgatttgaat tgttatctga cactgctaga tgtattggat
    25561 agtcacaaca ttgaccgagg tcgcacagac gtaacgcatg tttttaaaaa tttagaaaca
    25621 aaagtgttaa cgatggggtt catagatgat ttgctatatc cggatgatca agttcgtgca
    25681 ttaggtgaac gttttaaata tcatcgtcat ttcttcgtgc ctgataatgt tgggcatgat
    25741 ggattcctac taaactttag tacctgggca cctaacttat atcatttctt aaatttaaag
    25801 cattttaagc gtaagtaata atatatattt tcaaagaatg aagccactaa atcacagtta
    25861 tcatattcaa aaacatctag agtacatgag agtggaaatg tattgtaaat ctaaatcaag
    25921 cttgattgct atgtagtggg attaaataat catgttgaaa atgaaagcac acaaaagcga
    25981 ttcaaatgag tatgttaatt acttataaaa catgaaagtt attattcaat taaatgaaat
    26041 agaagcatac aatctataaa ttgttaattt tcattaaaga ggttaaaata atagctatag
    26101 ttaaaaatat gggagtggct tatgtgtttt caaaaataca acctaaagca acaataattg
    26161 caacgattgc gttggtattt gtcgctttag ctttatatct agtgcctggt ttaggactaa
    26221 tatttgcatt atttgcaacc ataccaggta tcgttttatg gaataaatca atacaatctt
    26281 tcgggattag tgcacttatt acagtaatta taacaactgt tttaggtaat actttcgttt
    26341 taagtgccat catattagtc ttaattgcaa gtttaattat tggtcaattg ctcaaagaaa
    26401 gaacgtctaa agaaagaata ttatacgtaa caacagtagc gatgagctta atttcattaa
    26461 tcgcttttat gttactacaa acattcggaa ggattccacc atcagcgagc atagtaaaac
    26521 ctttcaagca aacattacat gaagcgatta cgatgagcgg tgccgatgcg aatatgaccc
    26581 aaatattaga agaagggttt agacaagcga ccgttcaatt accaggtttc atcattatca
    26641 ttacattttt aatcgtctta attaacttaa tcgttacatt tccgatttta cgaaaattta
    26701 aaatcgctac acctgtattt aagccacttt tcgcgtggca aatgagcggt attttattat
    26761 ggatatacat tattgttatc atatgtttat tatttacagg tcaaccgagt gtgttccaga
    26821 gcattctttt aaacttccaa cttgtgttat cattagtaat gtatattcaa ggtttaagtg
    26881 ttattcattt ctttggtaaa gcgaaaggtt tgccgaatgc agtaacgatt ttactattgg
    26941 ttatcggtac aatactgaca cctacgacac atattgtagg actacttggt gttatcgatt
    27001 taagtttgaa tttgaagcga atcatgaaaa ataattctaa aaagtgaata gaggtggaat
    27061 aatgaatcgg cagtccacta agaaagcttt actaatacca tttgtcatca tgatcatcac
    27121 agcaattgtt ttaatgggtg tatggtttat ctttaatagt cttatagcac taattgcatc
    27181 tatcgttctt gtcgtgatga ttattgttag catcatttta ttcagacaag ctttaatgaa
    27241 aatggatagt tatgtagatg gtttgagtgc tcaaatttca acaacaaata ataaagcaat
    27301 caaacattta ccaattggta tcattgtttt agatgaaaat gatcacatcg aatgggttaa
    27361 ccaatttatg acagatcata tggaagcgaa tgtcatttct gaatctgtaa atgaagtatt
    27421 tccaaacatt ttaaagcaat tagatagagt gaaatccgtt gaaatagaat ataatcagta
    27481 tcatttccaa gtacgttatt ctgagaatga tcactgcctc tatttctttg atataactga
    27541 acaagtacaa acaaatgaac tatatgaaaa ttctaaacca atcattgcga cattattttt
    27601 agataactac gatgagatta cgcaaaatat gaatgatacg cagcgttcgg aaatcaactc
    27661 aatggtaacg cgtgtcatta gtcgatgggc aactgagtat aatatatttt tcaaaagata
    27721 cagttccgat caattcgtag cctatttaaa tcaaaaaata ttagctgact tagaagaatc
    27781 taaatttgat atcttgagtc aattacgtga aaaaagtgtt ggttatcgtg cccaattaac
    27841 attaagtatc ggtgttggtg aaggtactga aaatttaatc gacttaggtg aattatcaca
    27901 atcaggccta gacttagcat taggacgcgg tggcgaccaa gttgcaatta aaagtattaa
    27961 tggtaatgtg cgtttctatg gcggtaagac tgacccgatg gagaaacgta ctcgtgtaag
    28021 agcacgtgtg atctcacatg cgttaaaaga tatccttgca gagggtgaca aagtcattat
    28081 catgggacat aaacgtcctg acttagatgc aattggtgca gcaatcggtg tgtctagatt
    28141 tgcaatgatg aataatttag aagcatacat cgtattaaat gagactgaca ttgatccaac
    28201 attacgacgc gtgatgaacg aaatagataa aaagccagag ttaagagagc gatttattac
    28261 atcagatgat gcttgggata tgatgacatc taagacaacc gtagtgattg ttgatacgca
    28321 taaaccggaa ctggttttag atgaaaatgt cttaaataaa gcaaaccgta aagttgttat
    28381 cgatcatcat agacgtggtg aaagcttcat ctctaatcca ttgttgatat atatggaacc
    28441 atacgcaagt tcgacagctg aattggtaac agagttactg gaatatcaac caacagaaca
    28501 acgtttaaca cgtcttgaat caacagtgat gtatgcaggt attattgtag atacaagaaa
    28561 ctttacatta cgaacaggat caagaacatt cgatgcagcg agttatttac gtgcacatgg
    28621 tgcagatacg attttaacgc aacatttctt aaaagatgat gtggatactt acattaatcg
    28681 atctgaatta attcgaactg taaaagttga agataatggc atagccattg cgcatggttc
    28741 agacgataaa atttatcatc cagtaacagt tgcacaagca gcagatgaac tgttaagttt
    28801 agaaggtatt gaagcatcat atgttgttgc gagacgtgaa gataatctga ttggtatatc
    28861 tgcgcgttca ctcggttcag taaatgtcca gttaacaatg gaagcacttg gtggcggtgg
    28921 acatttaacc aatgcggcaa cacaacttaa aggtgtgaca gtcgaagagg cgatagcaca
    28981 attacaacaa gcaattacag aacaattaag taggagtgaa gatgcatgaa agtaattttt
    29041 acacaagatg ttaaaggtaa aggtaaaaaa ggtgaagtta aagaagtacc agtaggttat
    29101 gcaaataact tcttattgaa aaagaattat gctgtagaag caacaccagg taaccttaaa
    29161 caattagagt tacagaaaaa acgtgcaaaa caagaacgcc aacaagaaat tgaagatgct
    29221 aaagcattaa aagaaacgtt atcaaacatt gaagttgaag tatcagcaaa aactggtgaa
    29281 ggtggtaaat tgtttgggtc agtaagtaca aaacaaattg ccgaagcact aaaagcacaa
    29341 catgatatta aaattgataa acgtaaaatg gatttaccaa atggaattca ttccctagga
    29401 tatacgaatg tacctgttaa attagataaa gaagttgaag gtacaattcg cgtacacaca
    29461 gttgaacaat aaagttggat tgaaataaga ggtgtaacca ttcatggata gaatgtatga
    29521 gcaaaatcaa atgccgcata acaatgaagc tgaacagtct gtcttaggtt caattattat
    29581 agatccagaa ttgattaata ctactcagga agttttgctt cctgagtcgt tttatagggg
    29641 tgcccatcaa catattttcc gtgcaatgat gcacttaaat gaagataata aagaaattga
    29701 tgttgtaaca ttgatggatc aattatcgac ggaaggtacg ttgaatgaag cgggtggccc
    29761 gcaatatctt gcagagttat ctacaaatgt accaacgacg cgaaatgttc agtattatac
    29821 tgatatcgtt tctaagcatg cattaaaacg tagattgatt caaactgcag atagtattgc
    29881 caatgatgga tataatgatg aacttgaact agatgcgatt ttaagtgatg cagaacgtcg
    29941 aattttagag ctatcatctt ctcgtgaaag cgatggcttt aaagacattc gagacgtctt
    30001 aggacaagtg tatgaaacag ctgaagagct tgatcaaaat agtggtcaaa caccaggtat
    30061 acctacagga tatcgagatt tagaccaaat gacagcaggg ttcaaccgaa atgatttaat
    30121 tatccttgca gcgcgtccat ctgtaggtaa gactgcgttc gcacttaata ttgcacaaaa
    30181 agttgcaacg catgaagata tgtatacagt tggtattttc tcgctagaga tgggtgctga
    30241 tcagttagcc acacgtatga tttgtagttc tggaaatgtt gactcaaacc gcttaagaac
    30301 gggtactatg actgaggaag attggagtcg ttttactata gcggtaggta aattatcacg
    30361 tacgaagatt tttattgatg atacaccggg tattcgaatt aatgatttac gttctaaatg
    30421 tcgtcgatta aagcaagaac atggcttaga catgattgtg attgactact tacagttgat
    30481 tcaaggtagt ggttcacgtg cgtccgataa cagacaacag gaagtttctg aaatctctcg
    30541 tacattaaaa gcattagccc gtgaattaga atgtccagtt atcgcattaa gtcagttatc
    30601 tcgtggtgtt gaacaacgac aagataaacg tccaatgatg agtgatattc gtgaatctgg
    30661 ttcgattgag caagatgccg atatcgttgc attcttatac cgtgatgatt actataaccg
    30721 tggcggcgat gaagatgatg acgatgatgg tggtttcgag ccacaaacga atgatgaaaa
    30781 cggtgaaatt gaaattatca ttgctaagca acgtaacggt ccaacaggca cagttaagtt
    30841 acattttatg aaacaatata ataaatttac cgatatcgat tatgcacatg cagatatgat
    30901 gtaaaaaagt ttttccgtac aataatcatt aagatgataa aattgtacgg tttttatttt
    30961 gttctgaacg ggttgatata tgttaagttt gtgtattgaa agtgataaat tagtactgtc
    31021 aacgcctctg ttaaagggtt tttaggacgt tgaaaacgat ttgttaaaat gatttttctt
    31081 ttaaaaaggc cgaaaatcaa tgttcgattt ttatttgcat tatggtctcg atattggtag
    31141 aatatcaaat ggttaaatga gaaaaacttg gaggtgctca catgtcatca atcgtagtag
    31201 ttgggacaca atggggagac gaaggaaaag gaaaaataac ggatttcttg gcagaacagt
    31261 cagatgttat cgcgcgtttt tcaggtggta ataatgcagg ccataccatt caatttggcg
    31321 gagaaacata taaattacat ttagtaccat ctggtatctt ttacaaagac aaattagcgg
    31381 taatcggtaa cggagtcgtt gttgatccag ttgcactatt gaaagaatta gacggattaa
    31441 atgaacgtgg cattcctaca agtaatttac gtatatctaa tcgtgcgcaa gtgattttac
    31501 catatcactt agcacaagat gaatatgaag aacgtttacg tggtgacaat aagattggta
    31561 caactaaaaa aggtatcggt ccagcatatg tagacaaagt tcaacgtatc ggtattcgta
    31621 tggcagattt acttgaaaaa gaaacattcg aaagattatt aaaatcaaac attgaatata
    31681 aacaagcata tttcaaaggt atgtttaacg aaacatgtcc atcatttgat gatatctttg
    31741 aagaatatta tgcagcaggt caacgtctaa aagaatttgt aacagacaca tcaaaaatct
    31801 tagacgatgc atttgtagca gatgaaaagg tacttttcga aggtgcgcaa ggtgtaatgt
    31861 tagatatcga ccatggtaca tatccattcg ttacatcaag taatccaatt gcaggtaacg
    31921 ttactgttgg tacaggtgta ggtcctacat tcgtttcaaa ggtaattggt gtatgtaaag
    31981 cttatacatc acgtgttggt gatggtccat tccctactga attattcgat gaagatggac
    32041 atcatattag agaggttggt cgtgaatacg gtacaacaac aggacgtcca cgtcgtgtag
    32101 gttggtttga ttcagttgta ttacgtcact ctcgtcgtgt aagtggtatt acagatttat
    32161 ctattaactc aatcgatgtt ttaacaggcc tagacacagt gaaaatctgt acagcttatg
    32221 aattagacgg taaagaaatt actgagtacc cagcaaactt agatcaatta aaacgttgta
    32281 aaccaatctt tgaagagtta ccaggttgga cagaagacgt aacaaatgtg cgtactttag
    32341 aagaattacc tgaaaatgca cgtaaatatt tagagcgtat ttcagaatta tgtaatgtac
    32401 aaatttctat cttctcagtt ggtccagata gagaacaaac aaacctatta aaagaattgt
    32461 ggtagaactt tatataagtc atacacaatg attataaata catgagcctt ctatctttat
    32521 tggtaggagg cttttgttat gcttgcttct gtatcgattc gattatttag ataaaaaata
    32581 ctaacgtaaa ggcgatattt gctagtcata atttagaaga ttagatgata tttaacgaaa
    32641 attaagatga aatacttgaa tgtaagaagt ctgatgtcga aaatagctat taaaatagag
    32701 tagacgtaag tgtaaatgaa agcacctaaa atagaaaaat ttcaaaaata gcgtaattat
    32761 tataatgaat agactgccaa taaaatgcaa tttttcactt ataacattct tcaaaaaata
    32821 atagcaaaat tatgtaaaaa atatcttgtc atggcaagat tggctgtgct ataatctatc
    32881 ttgtgcttaa gaacggctcc ttggtcaagc ggttaagaca ccgccctttc acggcggtaa
    32941 cacgggttcg agtcccgtag gagtcaccat tttttaggtc tcgtagtgta gcggttaaca
    33001 cgcctgcctg tcacgcagga gatcgcgggt tcgattcccg tcgagaccgt acaaatgcct
    33061 atccaagagg ataggcattt ttttgcgttt aatattatat taataaaaga tatatggacg
    33121 aatgataatc atattgattt atctgttcgt ccattttctt taaaatgtat gaacctcaag
    33181 taacttagtg gttggatatg aaagataaac gtagacaata aaatctttat tagacgtaca
    33241 aacatatgct actgtcaaca tatttcttcg ttgtgatatg ccaccagtcc tccataacat
    33301 caattgttaa agtaacgaat aacgaataat gatatttatt ttctgagcaa tgacgtgcaa
    33361 ctagaagttg ccattatcct aattttatta ttggaataga gacctcatca ttgtgttaaa
    33421 tatcattgtc acaatccgcc gtgagaaact aataaaaaat agtaatatat aagtttatat
    33481 tggaaaatag aattaatagc ttataaatgg taaattatat aataggttac tatacgttat
    33541 aagacggaaa atgcgcacaa taacaaaaat agtaagcgac atcctgtgat tttttacaca
    33601 aacataaacg ataaagaaca aaaaatgata aaataatatt aatgatttaa gaaaagaggt
    33661 ttatgcaaat ggctagaaaa gttgttgtag ttgatgatga aaaaccgatt gctgatattt
    33721 tagaatttaa cttaaaaaaa gaaggatacg atgtgtactg tgcatacgat ggtaatgatg
    33781 cagtcgactt aatttatgaa gaagaaccag acatcgtatt actagatatc atgttacctg
    33841 gtcgtgatgg tatggaagta tgtcgtgaag tgcgcaaaaa atacgaaatg ccaataataa
    33901 tgcttactgc taaagattca gaaattgata aagtgcttgg tttagaacta ggtgcagatg
    33961 actatgtaac gaaaccgttt agtacgcgtg aattaatcgc acgtgtgaaa gcgaacttac
    34021 gtcgtcatta ctcacaacca gcacaagaca ctggaaatgt aacgaatgaa atcacaatta
    34081 aagatattgt gatttatcca gacgcatatt ctattaaaaa acgtggcgaa gatattgaat
    34141 taacacatcg tgaatttgaa ttgttccatt atttatcaaa acatatggga caagtaatga
    34201 cacgtgaaca tttattacaa acagtatggg gctatgatta ctttggcgat gtacgtacgg
    34261 tcgatgtaac gattcgtcgt ttacgtgaaa agattgaaga tgatccgtca catcctgaat
    34321 atattgtgac gcgtagaggc gttggatatt tcctccaaca acatgagtag aggtcgaaac
    34381 gaatgaagtg gctaaaacaa ctacaatccc ttcatactaa acttgtaatt gtttatgtat
    34441 tactgattat cattggtatg caaattatcg ggttatattt tacaaataac cttgaaaaag
    34501 agctgcttga taattttaag aagaatatta cgcagtacgc gaaacaatta gaaattagta
    34561 ttgaaaaagt atatgacgaa aagggctccg taaatgcaca aaaagatatt caaaatttat
    34621 taagtgagta tgccaaccgt caagaaattg gagaaattcg ttttatagat aaagaccaaa
    34681 ttattattgc gacgacgaag cagtctaacc gtagtctaat caatcaaaaa gcgaatgata
    34741 gttctgtcca aaaagcacta tcactaggac aatcaaacga tcatttaatt ttaaaagatt
    34801 atggcggtgg taaggaccgt gtctgggtat ataatatccc agttaaagtc gataaaaagg
    34861 taattggtaa tatttatatc gaatcaaaaa ttaatgacgt ttataaccaa ttaaataata
    34921 taaatcaaat attcattgtt ggtacagcta tttcattatt aatcacagtc atcctaggat
    34981 tctttatagc gcgaacgatt accaaaccaa tcaccgatat gcgtaaccag acggtcgaaa
    35041 tgtccagagg taactatacg caacgtgtga agatttatgg taatgatgaa attggcgaat
    35101 tagctttagc atttaataac ttgtctaaac gtgtacaaga agcgcaggct aatactgaaa
    35161 gtgagaaacg tagactggac tcagttatca cccatatgag tgatggtatt attgcaacag
    35221 accgccgtgg acgtattcgt atcgtcaatg atatggcact caagatgctt ggtatggcga
    35281 aagaagacat catcggatat tacatgttaa gtgtattaag tcttgaagat gaatttaaac
    35341 tggaagaaat tcaagagaat aatgatagtt tcttattaga tttaaatgaa gaagaaggtc
    35401 taatcgcacg tgttaacttt agtacgattg tgcaggaaac aggatttgta actggttata
    35461 tcgctgtgtt acatgacgta actgaacaac aacaagttga acgtgagcgt cgtgaatttg
    35521 ttgccaatgt atcacatgag ttacgtacac ctttaacttc tatgaatagt tacattgaag
    35581 cacttgaaga aggtgcatgg aaagatgagg aacttgcgcc acaattttta tctgttaccc
    35641 gtgaagaaac agaacgaatg attcgactgg tcaatgactt gctacagtta tctaaaatgg
    35701 ataatgagtc tgatcaaatc aacaaagaaa ttatcgactt taacatgttc attaataaaa
    35761 ttattaatcg acatgaaatg tctgcgaaag atacaacatt tattcgagat attccgaaaa
    35821 agacgatttt cacagaattt gatcctgata aaatgacgca agtatttgat aatgtcatta
    35881 caaatgcgat gaaatattct agaggcgata aacgtgtcga gttccacgtg aaacaaaatc
    35941 cactttataa tcgaatgacg attcgtatta aagataatgg cattggtatt cctatcaata
    36001 aagtcgataa gatattcgac cgattctatc gtgtagataa ggcacgtacg cgtaaaatgg
    36061 gtggtactgg attaggacta gccatttcga aagagattgt ggaagcgcac aatggtcgta
    36121 tttgggcaaa cagtgtagaa ggtcaaggta catctatctt tatcacactt ccatgtgaag
    36181 tcattgaaga cggtgattgg gatgaataat aaggagcata ttaaatctgt cattttagca
    36241 ctactcgtct tgatgagtgt cgtattgaca tatatggtat ggaacttttc tcctgatatt
    36301 gcaaatgtcg acaatacaga tagtaagaag agtgaaacga aacctttaac gacacctatg
    36361 acagccaaaa tggatacaac tattacgcca tttcagatta ttcattcgaa aaatgatcat
    36421 ccagaaggaa cgattgcgac ggtatctaat gtgaataaac tgacgaaacc tttgaaaaat
    36481 aaagaagtga agtccgtgga acatgttcgt cgtgatcata acttgatgat tcctgatttg
    36541 aacagtgatt ttatattatt cgattttacg tatgatttac cgttatcaac atatcttggt
    36601 caagtactga acatgaatgc gaaagtacca aatcatttca atttcaatcg tttggtcata
    36661 gatcatgatg ctgatgataa tatcgtgctt tatgctataa gcaaagatcg ccacgattac
    36721 gtaaaattaa caactacaac gaaaaatgat cattttttag atgcattagc agcagtgaaa
    36781 aaagatatgc aaccatacac agatatcatc acaaacaaag atacaattga tcgtacgacg
    36841 catgtttttg caccaagtaa acctgaaaag ttaaaaacat atcgcatggt atttaacacg
    36901 attagtgttg agaaaatgaa tgctatacta tttgacgatt caaccatcgt tcgtagttca
    36961 aagagtggtg ttacaaccta caacaataat acaggtgtcg caaactataa cgataaaaat
    37021 gaaaaatatc attataaaaa cctgtccgaa gatgaagcga gttccagcaa aatggaagaa
    37081 acgattccag gaacctttga ttttattaat ggtcatggtg gtttcttaaa cgaagacttt
    37141 agattgttta gtacgaataa tcagtcaggc gagttaacat atcaacgttt ccttaatggt
    37201 tatccaacgt ttaataaaga aggttctaat caaattcaag tcacttgggg tgaaaaaggc
    37261 gtctttgact atcgtcgttc gttattacgc accgacgttg ttttaaatag tgaggataat
    37321 aaatcgttgc cgaaattaga gtctgtacgt tcaagcttag cgaacaatag tgatattaat
    37381 tttgaaaaag taacaaacat cgctatcggt tacgaaatgc aggataattc agatcataat
    37441 cacattgaag tgcagattaa cagtgaactc gtaccgcgtt ggtatgtaga atatgatggc
    37501 gaatggtatg tttataacga tgggaggctt gaataaatga actggaaact gacaaagaca
    37561 cttttcattt tcgtgtttat tcttgtcaac atcgtgttag tatcgattta tgttaataaa
    37621 gtcaatcgct cacacattaa tgaagtcgag agtaacaatg aagttaattt tcagcaagaa
    37681 gaaattaaag taccgactag tatattgaat aaatcagtta aaggtataaa attagagcaa
    37741 attacagggc gatcaaaaga ctttagttct aaagctaaag gcgattcgga tttgaccaca
    37801 tcagatggtg gaaaattatt gaatgcgaac attagtcaat cggtaaaggt cagtgacaat
    37861 aacttaaaag atttgaaaga ttatgttaac aagcgcgtat ttaaaggtgc tgaatatcaa
    37921 ttaagcgaga ttagttcaga ttctgtaaaa tatgaacaaa cgtatgatga ttttccgatt
    37981 ttaaataaca gtaaagcgat gttgaacttt aatatagaag ataacaaagc gactagttat
    38041 aaacaatcaa tgatggatga cattaagccc acagatggtg cagataagaa gcatcaagtg
    38101 attggtgtga gaaaagcaat cgaggcatta tattataatc gttacttgaa aaaaggtgat
    38161 gaagtcatta atgctagact cggttactac tcagtcgtga atgaaacgaa tgttcaattg
    38221 ttacaaccaa actgggaaat taaagtgaag catgacggta aggataaaac gaatacttac
    38281 tatgtcgaag cgacaaataa taaccctaaa attattaatc attaatatga atcgtaataa
    38341 gctagcattg caagctcatc atatgtgaga agcggtgcta gcttttttgc tggtacggtt
    38401 tattatggct gatgtttttg cgtctccaac gtgcgcattt attcatattt taagtagaac
    38461 cgcattgtaa aattagtgta actgttattt taaaaacttt agtatttgtc taatcattgt
    38521 tataataatt aagaaattca ttgcacgtga ttatcaaaat ttaaatataa gaaaccggtc
    38581 gatgaactaa agttacataa taggaaaggt atacaaaaca gctaatatac tgatagtttc
    38641 tgtagggaaa atcgtatatt tgcactgatg tatattgcag tcatatagag agattgactg
    38701 tttaaagaga aaggatgagc cgcttgatac gcatgagtgt attagcaagt ggtagtacag
    38761 gtaacgccac ttttgtagaa aatgaaaaag gtagtctatt agttgatgtt ggtttgactg
    38821 gaaagaaaat ggaagaattg tttagtcaaa ttgaccgtaa tattcaagat ttaaatggta
    38881 ttttagtaac ccatgaacat attgatcata ttaaaggatt aggtgttttg gcgcgtaaat
    38941 atcaattgcc aatttatgcg aatgaaaaga cttggcaggc aattgaaaag aaagatagtc
    39001 gcatccctat ggatcagaaa ttcattttta atccttatga aacaaaatct attgcaggtt
    39061 tcgatgttga atcgtttaac gtgtcacatg atgcaataga tccgcaattt tatattttcc
    39121 ataataacta taagaagttt acgattttaa cggatacggg ttacgtgtct gatcgtatga
    39181 aaggtatgat acgtggcagc gatgcgttta tttttgagag taatcatgac gtcgatatgt
    39241 tgagaatgtg tcgttatcca tggaagacga aacaacgtat tttaggcgat atgggtcatg
    39301 tatctaatga ggatgcggct catgcaatga cagacgtgat tacaggtaac acgaaacgta
    39361 tttacctatc gcatttatca caagacaata acatgaaaga tttggcgcgt atgagtgttg
    39421 gccaagtatt gaacgaacac gatattgata cggaaaaaga agtattgcta tgtgatacgg
    39481 ataaagctat tccaacgcca atatatacaa tataaatgag agtcatccga taaagttccg
    39541 cattgctgtg agacgacttt atcgggtgct tttttatgtt gttggtggga aatggctgtt
    39601 gttgagttga atcggcttga ttgaaatgtg taaaataatt cgatattaaa tgtaatttat
    39661 aaataattta cataaaatca atcattttaa tataaggatt atgataatat attggtgtat
    39721 gacagttaat ggagggaacg aaatgaaagc tttattactt aaaacaagtg tatggctcgt
    39781 tttgcttttt agtgtaatgg gattatggca agtctcgaac gcggctgagc agcatacacc
    39841 aatgaaagca catgcagtaa caacgataga caaagcaaca acagataagc aacaagtacc
    39901 gccaacaaag gaagcggctc atcattctgg caaagaagcg gcaaccaacg tatcagcatc
    39961 agcgcaggga acagctgatg atacaaacag caaagtaaca tccaacgcac catctaacaa
    40021 accatctaca gtagtttcaa caaaagtaaa cgaaacacgc gacgtagata cacaacaagc
    40081 ctcaacacaa aaaccaactc acacagcaac gttcaaatta tcaaatgcta aaacagcatc
    40141 actttcacca cgaatgtttg ctgctaatgc accacaaaca acaacacata aaatattaca
    40201 tacaaatgat atccatggcc gactagccga agaaaaaggg cgtgtcatcg gtatggctaa
    40261 attaaaaaca gtaaaagaac aagaaaagcc tgatttaatg ttagacgcag gagacgcctt
    40321 ccaaggttta ccactttcaa accagtctaa aggtgaagaa atggctaaag caatgaatgc
    40381 agtaggttat gatgctatgg cagtcggtaa ccatgaattt gactttggat acgatcagtt
    40441 gaaaaagtta gagggtatgt tagacttccc gatgctaagt actaacgttt ataaagatgg
    40501 aaaacgcgcg tttaagcctt caacgattgt aacaaaaaat ggtattcgtt atggaattat
    40561 tggtgtaacg acaccagaaa caaagacgaa aacaagacct gaaggcatta aaggcgttga
    40621 atttagagat ccattacaaa gtgtgacagc ggaaatgatg cgtatttata aagacgtaga
    40681 tacatttgtt gttatatcac atttaggaat tgatccttca acacaagaaa catggcgtgg
    40741 tgattactta gtgaaacaat taagtcaaaa tccacaattg aagaaacgta ttacagttat
    40801 tgatggtcat tcacatacag tacttcaaaa tggtcaaatt tataacaatg atgcattggc
    40861 acaaacaggt acagcacttg cgaatatcgg taagattaca tttaattatc gcaatggaga
    40921 ggtatcgaat attaaaccgt cattgattaa tgttaaagac gttgaaaatg taacaccgaa
    40981 caaagcatta gctgaacaaa ttaatcaagc tgatcaaaca tttagagcac aaactgcaga
    41041 ggtaattatt ccaaacaata ccattgattt caaaggagaa agagatgacg ttagaacgcg
    41101 tgaaacaaat ttaggaaacg cgattgcaga tgctatggaa gcgtatggcg ttaagaattt
    41161 ctctaaaaag actgactttg ccgtgacaaa tggtggaggt attcgtgcct ctatcgcaaa
    41221 aggtaaggtg acacgctatg atttaatctc agtattacca tttggaaata cgattgcgca
    41281 aattgatgta aaaggttcag acgtctggac ggctttcgaa catagtttag gcgcaccaac
    41341 aacacaaaag gacggtaaga cagtgttaac agcgaatggc ggtttactac atatctctga
    41401 ttcaatccgt gtttactatg atataaataa accgtctggc aaacgaatta atgctattca
    41461 aattttaaat aaagagacag gtaagtttga aaatattgat ttaaaacgtg tatatcacgt
    41521 aacgatgaat gacttcacag catcaggtgg cgacggatat agtatgttcg gtggtcctag
    41581 agaagaaggt atttcattag atcaagtact agcaagttat ttaaaaacag ctaacttagc
    41641 taagtatgat acgacagaac cacaacgtat gttattaggt aaaccagcag taagtgaaca
    41701 accagctaaa ggacaacaag gtagcaaagg tagtaagtct ggtaaagata cacaaccaat
    41761 tggtgacgac aaagtgatgg atccagcgaa aaaaccagct ccaggtaaag ttgtattgtt
    41821 gctagcgcat agaggaactg ttagtagcgg tacagaaggt tctggtcgca caatagaagg
    41881 agctactgta tcaagcaaga gtgggaaaca attggctaga atgtcagtgc ctaaaggtag
    41941 cgcgcatgag aaacagttac caaaaactgg aactaatcaa agttcaagcc cagaagcgat
    42001 gtttgtatta ttagcaggta taggtttaat cgcgactgta cgacgtagaa aagctagcta
    42061 aaatatattg aaaataatac tactgtattt cttaaataag aggtacggta gtgttttttt
    42121 atgaaaaaaa gcgataaccg ttgataaata tgggatataa aaacgaggat aagtaataag
    42181 acatcaaggt gtttatccac agaaatgggg atagttatcc agaattgtgt acaatttaaa
    42241 gagaaatacc cacaatgccc acagagttat ccacaaatac acaggttata cactaaaaat
    42301 cgggcataaa tgtcaggaaa atatcaaaaa ctgcaaaaaa tattggtata ataagaggga
    42361 acagtgtgaa caagttaata acttgtggat aactggaaag ttgataacaa tttggaggac
    42421 caaacgacat gaaaatcacc attttagctg tagggaaact aaaagagaaa tattggaagc
    42481 aagccatagc agaatatgaa aaacgtttag gcccatacac caagatagac atcatagaag
    42541 ttccagacga aaaagcacca gaaaatatga gtgacaaaga aattgagcaa gtaaaagaaa
    42601 aagaaggcca acgaatacta gccaaaatca aaccacaatc cacagtcatt acattagaaa
    42661 tacaaggaaa gatgctatct tccgaaggat tggcccaaga attgaaccaa cgcatgaccc
    42721 aagggcaaag cgactttgtt ttcgtcattg gcggatcaaa cggcctgcac aaggacgtct
    42781 tacaacgcag taactacgca ctatcattca gcaaaatgac attcccacat caaatgatgc
    42841 gggttgtgtt aattgaacaa gtgtacagag catttaagat tatgcgagga gaagcatatc
    42901 ataaatgatg cggttttttc agccgcttca taaagggatt ttgaatgtat cagaacatat
    42961 gaggtttatg tgaattgctg ttatgttttt aagaagctta tcataagtaa tgaggttcat
    43021 gatttttgac atagttagcc tccgcagtct ttcatttcaa gtaaataata gcgaaatatt
    43081 ctttatactg aatacttata gtgaagcaaa gttctagctt tgagaaaatt ctttctgcaa
    43141 ctaaatatag taaattacgg taaaatataa ataagtacat attgaagaaa atgagacata
    43201 atatatttta taataggagg gaatttcaaa tgatagacaa ctttatgcag gtccttaaat
    43261 taattaaaga gaaacgtacc aataatgtag ttaaaaaatc tgattgggat aaaggtgatc
    43321 tatataaaac tttagtccat gataagttac ccaagcagtt aaaagtgcat ataaaagaag
    43381 ataaatattc agttgtaggg aaggttgcta ctgggaacta tagtaaagtt ccttggattt
    43441 caatatatga tgagaatata acaaaagaaa caaaggatgg atattatttg gtatatcttt
    43501 ttcatccgga aggagaaggc atatacttat ctttgaatca aggatggtca aagataagtg
    43561 atatgtttcc gcgggataaa aatgctgcaa aacaaagagc attaacttta tcttccgaac
    43621 tcaataaata tattacatca aatgaattta atactggaag attttattac gcagaaaata
    43681 aagattcatc ttatgattta aaaaatgatt atccatcagg atattctcat ggatcaataa
    43741 gattcaaata ttatgatttg aatgaaggat tcacagaaga agatatgcta gaggatttaa
    43801 agaaattttt agaactattt aatgaattag cttcaaaagt tacaaaaaca tcctatgata
    43861 gcttggtcaa tagcatagac gaaatacagg aagacagcga aattgaagaa attagaacag
    43921 cacaaaaaga taagacactc aaggaagtgg aagcacctaa aggaataatt ccaaaatata
    43981 aaaaaggtgt atcaaagact actaaaaatg attcagaaat tgaaaaatca aataaagaga
    44041 ataaattaac cggtaaagtt ggagaaaaat tagcgctaaa ttactttaat gagctaattg
    44101 ataataaaat agacgaagat aagaaagaac agtttaggaa tattttaaat gataatccag
    44161 gctctcaaca cggtcatggc tatgatttag tagcttttga tccaacaaat acagataaag
    44221 ctgtagaaaa atttattgaa attaaaacat ctacatcttc tagtattgag gaaccatttt
    44281 ttatgtcgct aaatgaaatg tttgctatga aagaatataa gcagaaatat ttaatattaa
    44341 gaatatttaa tgtttccggt aaagaaccac aattttattt tatagatcca tatgcaaatt
    44401 attctgaatt taaagatgta gatgatctca ttgacaaagt atttaatgta gaagctattc
    44461 agtataaagt ttttggcgaa aaatgattac ttgaacaaga gctaaaataa aattgtgatc
    44521 taataaaaat agaaggttct gttgcaaagt aaaaaaatat agctaaccac taatttatca
    44581 tgtcagtgtt cgcttaactt gctagcatga tgctaatttc gtggcatggc gaaaatccgt
    44641 agatctgaag agacctgcgg ttctttttat atagagcgta aatacattca atacctttta
    44701 aagtattctt tgctgtattg atactttgat accttgtctt tcttacttta atatgacggt
    44761 gatcttgctc aatgaggtta ttcagatatt tcgatgtaca atgacagtca ggtttaagtt
    44821 taaaagcttt aattacttta
//
LOCUS       DAMQWL010000005        44788 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.005, whole genome shotgun sequence.
ACCESSION   DAMQWL010000005 DAMQWL010000000
VERSION     DAMQWL010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 44788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 44788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..44788
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.005"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..146)
                     /locus_tag="PF788_000312"
     CDS             complement(<1..146)
                     /locus_tag="PF788_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6302603.1"
                     /translation="MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIE
                     HNYL"
     gene            complement(422..1123)
                     /gene="isaA"
                     /locus_tag="PF788_000313"
     CDS             complement(422..1123)
                     /gene="isaA"
                     /locus_tag="PF788_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase IsaA"
                     /protein_id="HDG6302604.1"
                     /translation="MKKTIMASSLAVALGVTGYAAGTGHQAHAAEVNVDQAHLVDLAH
                     NHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADY
                     TTSYNQGSNVQSISYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSS
                     AAQIMAQRTGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTNTVDQQINA
                     AVKAYKAQGLGAWGF"
     gene            complement(1731..2786)
                     /locus_tag="PF788_000314"
     CDS             complement(1731..2786)
                     /locus_tag="PF788_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIC"
                     /protein_id="HDG6302605.1"
                     /translation="MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDY
                     HPIFKTLLGVVVAIQFTVPALIGALVAMKFDLSPLAIAVVASAAYVGSGAAQFKNGAW
                     MITGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTKM
                     ITTAIGNMVNGFTELQPIVMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIG
                     ISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNMVKYPILMLPILTTAIVSGLVSA
                     LVGIHGTKESAGFGFIGMVGPINAFKFMEVDSAWLSVLLIVVAFFVVPFVTAWLADII
                     YRKVFRLYTNDIFKFMG"
     gene            complement(2913..3041)
                     /locus_tag="PF788_000315"
     CDS             complement(2913..3041)
                     /locus_tag="PF788_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302606.1"
                     /translation="MDFKNEDKIKVYCNNMFEKLPISLSENSEFCDILFFIVLSYR"
     gene            3196..3765
                     /locus_tag="PF788_000316"
     CDS             3196..3765
                     /locus_tag="PF788_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDG6302607.1"
                     /translation="MMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIAT
                     LNRATFYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDA
                     AKSCELNSEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLA
                     LHWFNTSQETADVFIDRNLPFLIHHIAHF"
     gene            3963..4463
                     /locus_tag="PF788_000317"
     CDS             3963..4463
                     /locus_tag="PF788_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302608.1"
                     /translation="MTSIFVFAYLNNTSGNMLFRQQMICACLLANVRHSSIVCLNNIC
                     CIVDMRCLNTKIGGIDVSETDEPQGFERTHNILNINQSSLGVVTYITNKLKSTLKQHI
                     IIARGKKRIDYRLSYNFYTTYYDNVEIKKIDCEYTYAMPIAILIRHTMSFDNAHFFAQ
                     LRHPVL"
     gene            4683..4913
                     /locus_tag="PF788_000318"
     CDS             4683..4913
                     /locus_tag="PF788_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HDG6302609.1"
                     /translation="MKILDRINELANKEKVQPLTVAEKQEQHALRQDYLSMIRGQVLT
                     TFSTIKVVDPIGQDVTPDKVYDLRQQYGYIQN"
     gene            complement(5063..5440)
                     /locus_tag="PF788_000319"
     CDS             complement(5063..5440)
                     /locus_tag="PF788_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDG6302610.1"
                     /translation="MIQSMWFNLHVQDLEKSAQFYKALGFKINRNPQMLDKMVGIQIG
                     QTTVILIENKHFQNVSQQSLNTEPNEVMISLGVNTNEEVDQLVNKVKEAGGTVVQEPT
                     VSQGFYGAMFKDLDGHHFNFLVC"
     gene            complement(5457..6278)
                     /locus_tag="PF788_000320"
     CDS             complement(5457..6278)
                     /locus_tag="PF788_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NmrA/HSCARG family protein"
                     /protein_id="HDG6302611.1"
                     /translation="MKDILVIGATGKQGNAVVKQLLEDGWYVSALTRNKNNRKLSDIG
                     HPHLSIVEGDLSDNVSLQSAMKGKYGLYSIQPIVKDDVSEELRQGMKIIEIAEQENIQ
                     HIVYSTAGGVNRNRTGPHFEVLAKIENRLMESNINATVIKPSFFMDNFLRIAKVEDER
                     ITLPEFINPNIKFTMISSIDIAKIASYIFAHPQSFTHQSIEIGSDEVTLSEAATIFSE
                     VTGKSTVIEGEFVSGVAEKQWLEEKGYEVDFELMAEINPTRLSLSDWLKVQNYNK"
     gene            complement(6298..6597)
                     /locus_tag="PF788_000321"
     CDS             complement(6298..6597)
                     /locus_tag="PF788_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2316 family protein"
                     /protein_id="HDG6302612.1"
                     /translation="MSLNKEQRRITAEELQAHFEASTLSVQMIAEKLNVTTEDVEKVL
                     AMTAPLGIFSHQLQRFIHLVWDVRDVINDNIKGNGQTPEPYTYLKGEKEDYWFLR"
     gene            6728..7285
                     /locus_tag="PF788_000322"
     CDS             6728..7285
                     /locus_tag="PF788_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDG6302613.1"
                     /translation="MRKDAKENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTL
                     YRHFKDKSDLCYYVIQRDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALL
                     QCIEAGNNKLRFYQSAFYQELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIE
                     HRHISIEAYRNYLLNIYLDEVGRND"
     gene            7278..7982
                     /locus_tag="PF788_000323"
     CDS             7278..7982
                     /locus_tag="PF788_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HDG6302614.1"
                     /translation="MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQ
                     KLGVHYVQLDVTSDYSVKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEV
                     YQTNVFGIVRMMNTFVPLLEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSS
                     KSAVTMLTLQYAKGLPNMQINAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGA
                     DGPTGTFINGDGEMPW"
     gene            8080..9090
                     /locus_tag="PF788_000324"
     CDS             8080..9090
                     /locus_tag="PF788_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDG6302615.1"
                     /translation="MKSITFEEHYVIEDIQKETMNAISADPKGVPMKVMLEGLEKKTG
                     FTNADELSHHDERIQFMNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIA
                     QYPNRFVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYDIIFKT
                     AENLDVPIYLHPAPVNSDIYQSYYKGNYPEVTAATFACFGYGWHIDVGIHAIHLVLSG
                     IFDRYPKLNMIIGHWGEFIPFFLERMDEALFAEHLNHPVSYYFKNNFYITPSGMLTKP
                     QFDLVKKEVGIDRILYAADYPYIEPEKLGVFLDELGLTDEEKEKISYTNGAKLLGLSP
                     NN"
     gene            9110..9940
                     /locus_tag="PF788_000325"
     CDS             9110..9940
                     /locus_tag="PF788_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6302616.1"
                     /translation="METLELQGAKLRYHQVGQGPVLIFIPGANGTGDIFLPLAEQLKD
                     HFTVVAVDRRDYGESELTEPLPDSASNPDSDYRVKRDAQDIAELAKSLSDEPVYILGS
                     SSGSIVAMHVLKDYPEVVKKIAFHEPPINTFLPDSTYWKDKNDDIVHQILTEGLEKGM
                     KTFGETLNIAPIDAKMMSQPADTEEGRIEQYKRTMFWLEFEIRQYTHSNITLDDFTKY
                     SDKITLLNGTDSRGSFPQDVNFYINKETGIPIVDIPGGHLGYIQKPEGFADVLLNMWG
                     "
     gene            complement(10087..10977)
                     /locus_tag="PF788_000326"
     CDS             complement(10087..10977)
                     /locus_tag="PF788_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HDG6302617.1"
                     /translation="MKIVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSV
                     DGALVSEDIPLSELTEGCICCAMKADVSEQLHQLYLKEQPDIVFIECSGIAEPVSVLD
                     ACLTPILAPFTTITHMIGVIDASMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKIDSAD
                     VETTSKLLKDLEVINPEADIQVGMHGSVTLPISVRQMTATSDNKHKSLHQMINHQFVQ
                     SPVKCTKAEFIKRLACLPSHIYRLKGFMTFEDTAHTYLIQFTQGQYELTPVAFSKKVP
                     EYLVLIGKGISKEDYQCLEQ"
     gene            complement(11075..12415)
                     /locus_tag="PF788_000327"
     CDS             complement(11075..12415)
                     /locus_tag="PF788_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000895187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HDG6302618.1"
                     /translation="MLEVKYDMRTGHYTPIPNEPHYLVISHADKLTATEKAKLRLLII
                     KQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPI
                     GIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVV
                     ILISLSTAIIDQTGLKSWMIWAIEPSMLWIGLQGNDIVPLLEGFGCNAAAISQAAHQC
                     HTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLK
                     KNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPI
                     LNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLV
                     FFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII"
     gene            complement(12409..13515)
                     /locus_tag="PF788_000328"
     CDS             complement(12409..13515)
                     /locus_tag="PF788_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HDG6302619.1"
                     /translation="MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKH
                     WPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYEL
                     NIFENTVVTNISVDDAYYTIATTTEIYHADYIFVATGDYNFPKKPFKYGIHYSEIEDF
                     DNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQR
                     LGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVLTPHEPILATGFDATKNPI
                     VQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLT
                     QREGLPAKQDVIENYQKNQMYLDDYSCCEVSCTC"
     gene            complement(13849..14145)
                     /locus_tag="PF788_000329"
     CDS             complement(13849..14145)
                     /locus_tag="PF788_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4176 domain-containing protein"
                     /protein_id="HDG6302620.1"
                     /translation="METIGSIIYLKEGSQKLMIINRGPIVEIENQKYMFDYSACKYPI
                     GVVEDEIYYFNEENIDSVIFKGYSDQDEVRFQELFENMKQNLDSEIQRGEVTQQ"
     gene            complement(14133..14501)
                     /locus_tag="PF788_000330"
     CDS             complement(14133..14501)
                     /locus_tag="PF788_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302621.1"
                     /translation="MSNKLDEINKIITAKHEQMDDLYDEKREVKALIDESDALNHSID
                     QLYQHLGERYYSSNMASRMEQFRDEFHFAKRRSTEALYEQQQQIQHGIRKVEEEMIDL
                     EMRRNVEIETVTKEENKWKQ"
     gene            complement(14516..14794)
                     /locus_tag="PF788_000331"
     CDS             complement(14516..14794)
                     /locus_tag="PF788_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04197 family type VII secretion effector"
                     /protein_id="HDG6302622.1"
                     /translation="MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNN
                     NAHSVIDDLMSKNQSVAEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN"
     gene            complement(15136..16002)
                     /locus_tag="PF788_000332"
     CDS             complement(15136..16002)
                     /locus_tag="PF788_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HDG6302623.1"
                     /translation="MNEQWLEHLPLKDIKEISPVSGGDVNEAYRVETDTDTFFLLVQR
                     GRKESFYAAEIAGLNEFERAGITAPRVIASGEVNGDAYLVMTYLEEGASGSQRQLGQL
                     VAQLHSQQQEEGKFGFSLPYEGGDISFDNHWQDDWCTIFVDKRLDHLKDELLNRGLWD
                     ANDIKVYDKVRRQIVAELEKHQSKPSLLHGDLWGGNYMFLQDGRPALFDPAPLYGDRE
                     FDIGITTVFGGFTSEFYDAYNKHYPLAKGASYRLEFYRLYLLMVHLLKFGEMYRDSVA
                     HSMDKILQDTTS"
     gene            16220..17284
                     /locus_tag="PF788_000333"
     CDS             16220..17284
                     /locus_tag="PF788_000333"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDG6302624.1"
                     /translation="MYKLIKPFLFKIEPEKAHGLTIDALKTLQKFPVLFPVVDKLFTY
                     KNPTLSQTIQGNTYDNPIGLAAGFDKSCEVPKALEHLGFGALELGGITPKPQPGNPQP
                     RMFRLLEDDALINRMGFNNIGMNKALSHLRKNAYQVPVGINVGVNKMTPYEARYQDYI
                     KVIDTFKHDVSFFTVNISSPNTENLQNFHDKDEFSMLCQALTAFKKQHDVTVPIYLKL
                     TSDMDFDGLKALLPAITETFDGIILANTTRQRDGLTSANKVEEGGLSGRPLFERNLKL
                     IKYAYQQTNGEFLIIGTGGVFSTEDAIKMMRHGASLIQIYSSLVIEGPGLTKKMNKGI
                     ARYLKDHHFDNVSDIIGLDA"
     gene            17439..17714
                     /locus_tag="PF788_000334"
     CDS             17439..17714
                     /locus_tag="PF788_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302625.1"
                     /translation="MTKETDNKKTVATSDNKDTQQQNQPEEDERQGLNGYRKTDLDLE
                     IEQELREMMKTGENETKNDYKKFKVFSLISTLVIVILAIIRFVHKMM"
     gene            complement(17900..18622)
                     /locus_tag="PF788_000335"
     CDS             complement(17900..18622)
                     /locus_tag="PF788_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDG6302626.1"
                     /translation="MINAEPIISKMKNQKINYDKVLKKLIGQWEREAIRPKILLHSCC
                     APCSTYTLEFLTQYADIAIYFANSNIHPKNEYLRRAKVQEQFVEDFNRKTGANVKYIE
                     APYEPHKFVKMVKDKELADEKEGGLRCTACFEMRLDIVAKAAVEHGYDYFGSAITLSP
                     KKNAQLINELGMDVQKIYDVNYLPSDFKKSKGYERSIEMCNDYNIFRQCYCGCVFAAM
                     QQGIDFKTVNKEAKAFLEQYPD"
     gene            18976..19425
                     /locus_tag="PF788_000336"
     CDS             18976..19425
                     /locus_tag="PF788_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HDG6302627.1"
                     /translation="MTALFPYIAFENSKEALAYYEEVFGATDVKRLEVGEEQASHFGM
                     TKEEAQEATMHAEFEVLGVKVLCSDSFGRADKINNGISLLIDYDVNNKEDADKVEAFY
                     EQIKDHSSIEIELPFADQFWGGKMGVFTDKYGVRWMLHGQDYTAIQQ"
     gene            complement(19506..20093)
                     /locus_tag="PF788_000337"
     CDS             complement(19506..20093)
                     /locus_tag="PF788_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDG6302628.1"
                     /translation="MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRS
                     TFYTHYYDKYDLLEKLEDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKD
                     IAFYQLMFRMGKDSNIHEKLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFI
                     RHWVEDPNRIDKVDLIRHFNTIVNQGPATIIKNIQ"
     gene            complement(20071..20169)
                     /locus_tag="PF788_000338"
     CDS             complement(20071..20169)
                     /locus_tag="PF788_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302629.1"
                     /translation="MPIINVGDLWDNEHNVYNHWGGLDINDYRSTY"
     gene            20226..21908
                     /locus_tag="PF788_000339"
     CDS             20226..21908
                     /locus_tag="PF788_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HDG6302630.1"
                     /translation="MNQHLLGNPKLTVTHVNEVKAGINHIVVDSVQYGNQEMIMEKDV
                     TVEMRDGEKLYINIFRPNKDGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSF
                     TPEESPDPGFWVPNDYVVVKVALRGSDKSKGVLSPWSKREAEDYYEVIEWAANQSWSN
                     GNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGLNDMYREVAFHGGIPDTGFYRFWT
                     QGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQVPLSQIKTPLLTCASWSTQGLHNR
                     GSFEGFKQAASEEKWLYVHGRKEWESYYARENLERQKSFFDFYLKEENNDWKDTPHVI
                     YEVRDQFYKGEFKSASAFPLPNAEYTPLYLNAENHTLNHAKISSAHVAQYDSEDKQQD
                     VSFKYTFDKDTELVGNMNLKLWVSTKDSDDMDLFAGIKKLDRRGNEVNFPDFNHIENG
                     QVATGWLRVSHRELDQEKSSIAQPWHKHETELKLSQDEIVPVEIELLPSGTLFKQGET
                     LEVVVKGSEIVIGNSTPGMKTRYEHEETVNKGMHMIYTGGKYDSQLIIPIVN"
     gene            complement(22037..22420)
                     /locus_tag="PF788_000340"
     CDS             complement(22037..22420)
                     /locus_tag="PF788_000340"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015901315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDG6302631.1"
                     /translation="MIRTMMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKV
                     AIVNNNNGARFETYVIAGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHA
                     PKVAVMNEDNVIIEMIHEKENTIVL"
     gene            complement(22422..23273)
                     /locus_tag="PF788_000341"
     CDS             complement(22422..23273)
                     /locus_tag="PF788_000341"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDG6302632.1"
                     /translation="MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRE
                     SVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPG
                     ELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQ
                     MVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGE
                     RQSKVIIDRVTEYLESHISGRIEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLID
                     NIIIGAE"
     gene            complement(23266..24084)
                     /gene="panB"
                     /locus_tag="PF788_000342"
     CDS             complement(23266..24084)
                     /gene="panB"
                     /locus_tag="PF788_000342"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017431941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDG6302633.1"
                     /translation="MKTVSQLIDMKQKQTKISMVTAYDFPSAKQVEAAGIDMILVGDS
                     LGMTVLGYESTVQVTLADMIHHGRAVRRGAPNTFVVVDMPIGAVGISMTQDLNHALKL
                     YQETNANAIKAEGAHITPFIEKATAIGIPVVAHLGLTPQSVGVMGYKLQGATKEAAEQ
                     LILDAKNVEQAGAVALVLEAIPNDLAEEISKHLTIPVIGIGAGKGTDGQVLVYHDMLN
                     YGVEHKAKFVKQFADFSVGVDGLKQYDQEVKSGAFPSEEYTYKKKIMNEVNNND"
     gene            24157..25017
                     /locus_tag="PF788_000343"
     CDS             24157..25017
                     /locus_tag="PF788_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDG6302634.1"
                     /translation="MLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPH
                     APAQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHLTHLAHEDTLIILAQNGYGQLE
                     HISFKNVCQAVVYISGQKKGDVVTHFRDYQLRIQDNALTRQFRDLVQDSQIDIVLEAN
                     IQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRTLCRQLLLDGCRVAQAEGLNFSE
                     QTVDTIMTIYQGYPDEMGTSMYYDIAHQQPLEVEAIQGFIYRRAREHNLDTPYLDTIY
                     SFLRAYQQNM"
     gene            complement(25103..25807)
                     /gene="budA"
                     /locus_tag="PF788_000344"
     CDS             complement(25103..25807)
                     /gene="budA"
                     /locus_tag="PF788_000344"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HDG6302635.1"
                     /translation="MTNVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDG
                     EVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNE
                     MLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFT
                     PELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVK
                     AKIDYKDVAEEIREAE"
     gene            complement(26085..27044)
                     /locus_tag="PF788_000345"
     CDS             complement(26085..27044)
                     /locus_tag="PF788_000345"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HDG6302636.1"
                     /translation="MKTFGKKVVLIGDGSVGSSYAFAMVTQGVADEFVIIDIAKDKVK
                     ADVQDLNHGTVHSPSPVDVKAGEYEDCKDADLVVITAGAPQKPGETRLQLVEKNTKIM
                     KSIVKSVMDSGFDGYFLIAANPVDILTRFVKEYTGLPAERVIGSGTVLDSARLQYLIS
                     QELGVAPSSVDASIIGEHGDTELAVWSQANVAGISVYDTLKEQTGSEAKAEEIYVNTR
                     DAAYEIIQAKGSTYYGIALALMRISKAILNNENNVLNVSIQLDGQYGGHKGVYLGVPT
                     LVNQHGAVKIYEMPLSAEEQALFDKSVKTLEDTFDSIKYLLED"
     gene            27731..29179
                     /locus_tag="PF788_000346"
     CDS             27731..29179
                     /locus_tag="PF788_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDG6302637.1"
                     /translation="MGSFFNKIARKEDPAIYQNKDGHLKRTLRVRDFLALGVGTIVST
                     SIFTLPGIVAAEHAGPAVALSFLLAAIVAGLVAFTYAEMAAAMPFAGSAYSWVNVLFG
                     EFFGWVAGWALLAEYFIAVAFVASGFSANLRGLVKPIGIELPAALSNPFGTNGGFIDI
                     IAAIVILLTALLLSRGMSEAARMENILVILKVLAIILFVIVGLTAINVSNYVPFIPEH
                     KVTATGDFGGWQGIYAGVSMIFLAYIGFDSIAANSAEALDPQKTMPRGILGSLSVAIV
                     LFIAVALVLVGMFHYSQYANNAEPVGWALRQSGHGVVAAIVQAISVIGMFTALIGMML
                     AGSRLLYSFGRDGLLPSWLSHLNDKHLPNRALVILTIIGVLIGSMFPFAFLAQLISAG
                     TLVAFMFVSLAMYRLRKREGKDLPIPAFKLPLYPVLPAITFVLVLLVFWGLGFEAKLY
                     TLIWFIVGIILYLSYGLRHSKKNDVAEYHPPK"
     gene            complement(29260..30597)
                     /locus_tag="PF788_000347"
     CDS             complement(29260..30597)
                     /locus_tag="PF788_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDG6302638.1"
                     /translation="MSKAHQLIQEDEHYFAKSGRIKYYPLVIDHGYGATLVDIEGKTY
                     IDLLSSASSQNVGHAPREVTEAIKAQVDKFIHYTPAYMYHEPLVRLAKKLCEIAPGDF
                     EKRVTFGLTGSDANDGIIKFARAYTGRPYIISFTNAYHGSTFGSLSMSAISLNMRKHY
                     GPLLNGFYHIPFPDKYRGMYEQPQANSVEEYLAPLKEMFAKYVPADEVACIVIETIQG
                     DGGLLEPVPGYFEALEKICREHGILIAVDDIQQGFGRTGTWSSVSHFNFTPDLITFGK
                     SLAGGMPMSAIVGRKEIMNCLEAPAHLFTTGANPVSCEAALATIQMIEDQSLLQASAE
                     KGEYVRKRMDQWVSKYNSVGDVRGKGLSIGIDIVSDKKLKTRDASAALKICNYCFEHG
                     VVIIAVAGNVLRFQPPLVITYEQLDTALNTIEDALTALEAGNLDQYDISGQGW"
     gene            30855..31271
                     /locus_tag="PF788_000348"
     CDS             30855..31271
                     /locus_tag="PF788_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302639.1"
                     /translation="MRLKVLFHFIAAIFISFMLLWMTMLFDLISNQSHLKALLLNLDF
                     LIPSDNTPYILEIICHLLIGSVIYFVFVLLFHTSKRLYYLCYIPLFFLFIALYPFLVF
                     IAQRPIFQFSVTELIGWIITHIFFMSLMALVIPRIK"
     gene            31394..32284
                     /locus_tag="PF788_000349"
     CDS             31394..32284
                     /locus_tag="PF788_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002478556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose bisphosphate aldolase"
                     /protein_id="HDG6302640.1"
                     /translation="MNKEQLEKMKNGKGFIAALDQSGGSTPKALKEYGVNEDQYSNED
                     EMFQLVHDMRTRVVTSPSFSPDKILGAILFEQTMDREVESKYTADYLADKGVVPFLKV
                     DKGLAEEQNGVQLMKPIDNLDNLLDRANERHIFGTKMRSNILELNEQGIKDVVEQQFE
                     VAKQIIAKGLVPIIEPEVNINAKDKAEIEKVLKAELKKGLDSLNADQLVMLKLTIPTE
                     PNLYKELAEHPNVVRVVVLSGGYSREKANELLKDNAELIASFSRALASDLRADQSKEE
                     FDKALGDAVESIYDASVNKN"
     gene            complement(32477..33973)
                     /gene="mqo"
                     /locus_tag="PF788_000350"
     CDS             complement(32477..33973)
                     /gene="mqo"
                     /locus_tag="PF788_000350"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HDG6302641.1"
                     /translation="MAKSNSKDIVLIGAGVLSTTFGSMLKEIEPDWNIHVYERLDRPA
                     IESSNERNNAGTGHAALCELNYTVLQPDGSIDIEKAKVINEEFEISKQFWGHLVKSGS
                     IENPREFINPLPHISYVRGKNNVKFLKDRYEAMKAFPMFDNIEYTEDIEVMKKWIPLM
                     MKGREDNPGIMAASKIDEGTDVNFGELTRKMAKSIEAHPNATVQFNHEVVDFEQLSNG
                     QWEVTVKNRLTGEKFKQVTDYVFIGAGGGAIPLLQKTGIPESKHLGGFPISGQFLACT
                     NPQVIEQHDAKVYGKEPPGTPPMTVPHLDTRYIDGQRTLLFGPFANVGPKFLKNGSNL
                     DLFKSVKTYNITTLLAAAVKNLPLIKYSFDQVIMTKEGCMNHLRTFYPEARNEDWQLY
                     TAGKRVQVIKDTPEHGKGFIQFGTEVVNSQDHTVIALLGESPGASTSVSVALEVLERN
                     FPEYKTEWAPKIKKMIPSYGESLIEDEKLMRKIRKQTSKDLELGYYEN"
     gene            34269..34598
                     /locus_tag="PF788_000351"
     CDS             34269..34598
                     /locus_tag="PF788_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302642.1"
                     /translation="MAYSILNLYSILIQYKCKINHKKDIQYLHPRKTLQLPLILKIIL
                     NLALIGIVIIVLTHTEFQLNAGDSNVFLLNWDIRGLTSYIFSFLILVALVSKLILIFI
                     TRRQRTS"
     gene            complement(34658..36256)
                     /locus_tag="PF788_000352"
     CDS             complement(34658..36256)
                     /locus_tag="PF788_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDG6302643.1"
                     /translation="MQKSALFAPEKYNIISEIEKYSHIPDKKAILYHNTEGEDISVTY
                     QQLIEQSNKVGNVLASHGLSKGDKVLIMMPRSIATYELYIAALKLGVAIIPCSEMLRT
                     KDLQYRITHGEINAVIALEPFTVEFEKIKEYDALTKFVIAGQKDGWISLEAEKENASN
                     KLEMADTTRDDMAILSYTSGTTGNPKAVTHCHGWGFAHLQMAPKHWLCINEDDLVWAT
                     AAPGWQKWVWSPFLSVLGSGATAFVFNGRFSPETYLELLQKYQINVLCCTPTEYRMMA
                     KLQNLNDYDLTHLHSAVSAGEPLNREVVEQFKKYFNLTVRDGYGQTESTLLIGFLKDT
                     PQRIGSMGKGIPGSSVTVVDDEGNSVPANTKGNIAVPLDLPALFKGYYKEPERTAKAQ
                     TGKYYITGDLAHVDDDGYFWFEGRRDDIIISSGYTIGPFEVEDALTNHPAVKECAVVA
                     KPHDIRGNIVKAFVILQDHTAGDDTLVKELQQFVKNEVAPYKYPREIEFVDDLPKTNS
                     GKIRRVELRDAEIEKWQQQKDSNQ"
     gene            complement(36450..36893)
                     /locus_tag="PF788_000353"
     CDS             complement(36450..36893)
                     /locus_tag="PF788_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HDG6302644.1"
                     /translation="MKIYDEYRSYVIEELDDCLTIQKNNDTAYYDVLEAINDLSNDSL
                     CVLNHLYINEGQEETFEQKFLRRNKHLKNVDGFKALRFLRPRTAGRHYIIITLWENRQ
                     AFYHWQNSAEYKHTHKHRGTSKGADVKIINRELSYNIRIELADMV"
     gene            complement(37174..37386)
                     /locus_tag="PF788_000354"
     CDS             complement(37174..37386)
                     /locus_tag="PF788_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterile alpha motif-like domain-containing
                     protein"
                     /protein_id="HDG6302645.1"
                     /translation="MSFYEYIQTFKDDKTPLGELAIWIKEDDSFPKQEKLTENILSYF
                     HQMSNIDHEFLEIVKRSLSLYDQLKS"
     gene            complement(37664..39373)
                     /gene="betA"
                     /locus_tag="PF788_000355"
     CDS             complement(37664..39373)
                     /gene="betA"
                     /locus_tag="PF788_000355"
                     /EC_number="1.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choline dehydrogenase"
                     /protein_id="HDG6302646.1"
                     /translation="MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDY
                     FWDLFIQMPAALMFPSGNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQ
                     RGNPMDYEGWAEPEGMETWDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPAT
                     NPLFQSFFDAGVEAGYHKTPDVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKN
                     LTVETRAFVTEIHYEGRRATGVTYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGD
                     SEFLKSKGIEPRVHLPGVGENFEDHLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIF
                     TRTGAAASNHFEGGGFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMY
                     SNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEI
                     SPGPEVQTDEEILDWVRRDGETALHPSCSAKMGPASDPMAVVDPLTMKVHGMENLRVV
                     DASAMPRTTNGNIHAPVLMLAEKAADIIRGRKPLEPQYIDYYKHGVHDENEGAIEVKP
                     YAK"
     gene            complement(39634..41124)
                     /gene="betB"
                     /locus_tag="PF788_000356"
     CDS             complement(39634..41124)
                     /gene="betB"
                     /locus_tag="PF788_000356"
                     /EC_number="1.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="betaine-aldehyde dehydrogenase"
                     /protein_id="HDG6302647.1"
                     /translation="MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGT
                     KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTL
                     EESYADMDDIHNVFMYFAGLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPL
                     LQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGD
                     VMSGHKEVDLVSFTGGIETGKHIMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQ
                     ALNGGYFHAGQVCSAGSRILVQNSIKDKFEQALIDRVKKIKLGNGFDADTEMGPVIST
                     EHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVF
                     GPVVTVEGFETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPY
                     FAQAPWGGYKQSGIGRELGKEGLEEYLVSKHILTNTNPQLVNWFSK"
     gene            41193..41288
                     /locus_tag="PF788_000357"
     CDS             41193..41288
                     /locus_tag="PF788_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302648.1"
                     /translation="MKNVSIYKTTQELSFVSSLDFYLTKHLTLML"
     gene            41377..41940
                     /locus_tag="PF788_000358"
     CDS             41377..41940
                     /locus_tag="PF788_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GbsR/MarR family transcriptional regulator"
                     /protein_id="HDG6302649.1"
                     /translation="MTRSQNKQQQLEQAKDIVINSIGQTMDLYGTNRSVGNLYGTMVF
                     EGSMTLDEMRHQLQMSKPSMSAGVKKLQEFDIVKQQFTRGSRKQHFIAEKDFFIFFRN
                     FFTKKFQREIDINVEAVKDAQAIINSLLESSDLTEAETQEAQKIKSQLDHTHVYYEWL
                     EQLTEAIESGEIFKYFPIPEQPSDSEN"
     gene            complement(42128..42814)
                     /locus_tag="PF788_000359"
     CDS             complement(42128..42814)
                     /locus_tag="PF788_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDG6302650.1"
                     /translation="MTNQFKNKQSKLHDSLESITKNLYATPTSELPFDNRFLFKSFIL
                     KRETGNIVIYHSGHLGDSQQDIASLGGVSKVLMNHDHESIGGSNQVEAPYFIHENDVA
                     ALKHKISVQKQFSNRVMLDKDLEVIPAPGHTPGTTLFLWDDGHHRYLFTGDFICFEGK
                     RWRTVILGSSDREKSIQSLEMVKELDFDVLVPWVTIKDEPLVYFVENEYEKREQIQNI
                     IDRVREGENS"
     gene            complement(43078..44700)
                     /locus_tag="PF788_000360"
     CDS             complement(43078..44700)
                     /locus_tag="PF788_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501390.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDG6302651.1"
                     /translation="MKKEKVMDWTTFIGTVAVLLFAVIPMMAFPKASEDIITGINSAI
                     SDSIGSIYLFMGLAIFCFVMYIAFGKYGNVTLGKASDKPEFNTFTWAAMLFCAGIGSD
                     ILYWGVIEWAFYYQVPPNGAKSMSDEALQYATQYGMFHWGPIAWAIYVLPALPIGYLV
                     FVKKQPVYKISQACRPILKGQTDKFVGKVVDILFIFGLLGGAATSLALGVPLISAGIE
                     RLTGLDGKNMILRSAILLTITVIFAISSYTGLKKGIQKLSDINVWLSFVLLAFIFIIG
                     PTVFIMETTVTGFGNMLRDFFHMATWLEPFGGIKGRKETNFPQDWTIFYWSWWLVYAP
                     FIGLFIARISKGRRLKEVVLGTIIYGTLGCVLFFGIFGNYAVYLQISGQFNVTQYLNT
                     HGTEATIIEVVHHLPFPSLMIVLFLVSAFLFLATTFDSGSYILAAASQKKVVGEPLRA
                     NRLFWAFALCLLPFSLMLVGGERALEVLKTASILASVPLIVIFIFMMISFLIILGRDR
                     IKLETRAEKLKEVERRSLRIVQVSEEEQDDNL"
BASE COUNT        14324 a         8356 c         6950 g        15158 t
ORIGIN      
        1 ttcaaatagt tatgttcgat gttctccaaa tcaggttgat catctctatc aatttttata
       61 ttaaattcat ttttttgaat cgataaaata aactcgatta gctcttcctt ataagaccta
      121 ttatattcaa ttatgtttat agccattttt atctcctttt tcatttaatt taattataaa
      181 atgtgcgttt agtttgtatc tagtgtactc agtacagcct caaatgaagt ttcattccac
      241 ttggcactta ataaagacaa gtattttagc agtaatacaa taaagtccaa taaatttccc
      301 taacttcaat atccactttt taaaaaatgt atttttaatt aataaaaaaa ctctccccaa
      361 tttctatggg aagagctata tatttaatgt ctaaacatta cttttattta ttatgaagga
      421 attagaatcc ccaagcacct aaaccttgtg ctttgtatgc tttaacagct gcgttgattt
      481 gttggtcaac agtgtttgtt ggaccccaac ctggcatagt ttggaataaa cctgaagcac
      541 ctgatgggtt gtaagcattt acttgaccat ttgattcacg agcgatgatt gcagcccatg
      601 tagaagctga aacaccagta cgttgagcca tgatttgagc tgctgatgaa ccagtagcac
      661 ctgcagtatt accattgctt aatctcactg aacttgaagt agttgaagtg ctgtagttat
      721 ggtaagttgg agctgaaaca gcttcaacgt ttgagttact tgattgtgca ttgtagctta
      781 ttgattgtac atttgaacct tggttgtatg aagtagtgta gtctgcacct gcaacgtttg
      841 agaaaccagc agtttgacca ttagctgctt catagctcca tgaccatgta gtaccatttg
      901 aagtgaagtt atattggaaa ccatctttta caaagtggat gtcatatgca ccatctttga
      961 ttggagctgc atttaattga tcttggtgat tatgcgctaa gtcaactaag tgtgcttgat
     1021 caacgtttac ttcagcagcg tgtgcttgat gtcctgtacc tgctgcgtaa cctgttacac
     1081 ctaatgccac tgctaatgat gatgccataa ttgtcttttt catagtaaaa aatcctccag
     1141 taataattgt aagtttatgt ttttagtaat tatattttga atttgaatgt cgtagtgcaa
     1201 gtttaaattg tcttttattt ctttcaacgg tactcactat atcacaaaaa accagccagt
     1261 aaattacact ttctttacaa aacattacaa tatcaagtgt tatttgtaat gttgaaatat
     1321 ggctgtttta tactgtaatg tgaaatatgt gccctttaga atccaatcaa cccttgaaat
     1381 agtctttaac acataagatt tttactatat ttagctcaac tattacagct ttcgtaatat
     1441 tacagattgt atttttgtta catagctgta atatatctga catgtaactt ctcttatttt
     1501 cgtacattaa acgcaattaa aaagcaatca acaaatatgt ttctacacat gtattgattg
     1561 ctattattgt tgtatattca aagttttaaa acacacatct tttgtgaatt gtcttatctt
     1621 ttattagcgc aaataaactg cagctcaatt atattgttca acttcattct cgcaattcac
     1681 aataacatta aataattttt ggtctcatat tttcaaaaaa catactgtta ttatcccatg
     1741 aatttaaaaa tatcattagt atataaacga aacactttac gataaatgat atctgcaagc
     1801 caagctgtta caaatggtac aacaaagaac gctactacaa ttagtaagac actcaaccaa
     1861 gcagaatcaa cctccataaa tttaaatgca ttaatcggtc ctaccattcc tataaaacca
     1921 aatccagctg actctttcgt tccatgaata cctactaatg ctgataccaa acctgataca
     1981 atggctgtcg ttaatattgg taacataaga attggatatt tcaccatatt aggtatcatc
     2041 attttaacgc ctccaaagaa gacggataac ggcaccccta aacgattcac tttacttgta
     2101 ccaattatca atactgcttc agtcgcggag ataccaattg acgctgatcc agctgctaaa
     2161 cctgtaatac ctatcgcaaa ggcaatggcc acagttgata gtggcgaaat aataataaga
     2221 ctaaatacca ttgaaatcaa aatactcatg acaatcggtt gtaattctgt aaaaccatta
     2281 accatattac cgatggctgt tgtaatcatt ttcgtatacg gcaatattaa aacaccaatt
     2341 gcacctgaaa taccgccaac aactgttggg aatacaatca atgccatact acctacgcga
     2401 tgttgaataa gtaaaatgaa taacactgca atcgctgctg taatcattgt attaattaaa
     2461 tcaccaatac ccgtaatcat ccaagcacca tttttaaact gcgctgcacc gcttcctaca
     2521 tatgctgcac ttgccacaac agcaattgct aatggcgata ggtcaaattt catggcaacc
     2581 aatgcaccaa tcaaagcagg tactgtaaat tgaattgcaa cgacaacgcc taataacgtt
     2641 ttaaaaatcg gatgataatc cataaagtat ttaaaaattt ctccaagtat cgcattagga
     2701 actaaacccg caacaatacc tatggcgaca cctgataaaa ctctaaatat aaaatctttg
     2761 ggtgtaattg ttttaattga tgtcataata tcatccttcc atttatgtat atacatctgt
     2821 atgcaaataa taaagagcct taagttataa gctgccacta gcttaaattc taagatgtgc
     2881 atgccgatgt tgttatattt aggctagcag tatcatctat aactcaagac tatgaaaaat
     2941 agtatatcac aaaattctga attttcagat aaagaaattg gcaatttttc aaacatattg
     3001 ttacaataca cttttatttt atcttcattt ttaaaatcca ttaatacaat agaagaaaga
     3061 cattcaaatg cttaccaaaa aggtacatta tttgttagga gcgtatcagc acttacatat
     3121 catcaacaca attgacaata taatagaaga tactgataat aagtgttaaa acaacagatg
     3181 ttaggtagtg aacaaatgat ggaaagtaaa tccatagatc caagaatcgt tagaaccaaa
     3241 caattgcttg tcgatgcttt tcttaaaatt tctagagaaa agaaattatc tcaaattaca
     3301 gttaaagata tcactgatat tgctacgcta aatcgtgcaa cattttacgc tcatttcact
     3361 gataaagaag acctcctaga ctacacatta tctgtaacca ttttaaaaga cttgaatgat
     3421 aatttgagca tttctaatgt cattaatgaa aaggttctgc gtaatatttt catttcaatt
     3481 gcgagttata tcaaagatgc tgcaaagtct tgcgaattaa atagtgaagc attttgcaac
     3541 aaagcacatc aacgtattaa taatgaatta gaagatattt ttgcgattat gttagaaaac
     3601 agctatccgg agcatcaacg agatatcatt gtaaatagtg cgagtttttt agcagctggt
     3661 atctcaggct tagcattaca ttggtttaac acgagtcaag agacagccga tgtgtttatc
     3721 gatcgcaacc ttccattttt aattcatcat atagcacatt tttaataaaa cttggtattt
     3781 agtcatgcat cttgaaatca ctatgtgact taggttcata cttgtacaca caataaaatt
     3841 taacgtatta cgattgatta gccgtgtcta ggacataaat caacgtccta tactctacaa
     3901 tgtcatatta gcagtcgtta actgaatgaa aataagcttg tcattaaaac atatagattt
     3961 tagtgacaag catttttgtt tttgcgtact taaacaacac ttcaggcaat atgttgttta
     4021 ggcaacaaat gatatgtgcg tgtttattgg caaacgtacg acatagtagt atagtatgtc
     4081 taaacaacat atgttgcata gttgatatgc gttgtttaaa tactaagata ggagggattg
     4141 acgtgagcga gacagatgaa cctcaggggt ttgaacgcac gcataatata ttaaatatta
     4201 atcagagtag tctgggtgta gtgacataca ttacaaataa attaaagtcg acgttgaagc
     4261 aacacataat aattgctcgt ggtaaaaagc gaatcgacta tcgactgtcg tataactttt
     4321 acactacgta ttatgataat gtagaaatca agaaaatcga ctgtgaatat acctatgcta
     4381 tgcccattgc aattttaata agacacacga tgtcattcga caatgctcat ttctttgctc
     4441 agttacgtca tcctgtctta taaaacaaca ttgcagacat gtatatcaaa cgacacttca
     4501 ataacatcac tttgccatcg tactactagt aaaatcgtgt ctcaaatccc ttattttaat
     4561 tccaaaaatc tgctggtcaa aagaccgaga aactaaaaac attacttaat gtgttgataa
     4621 attaccatat aaaaataatc tcaaaatata tcaacacttg attctaagga ggatatgaca
     4681 atatgaaaat tttagataga attaatgaac ttgcaaataa agaaaaagta caaccactta
     4741 ctgtagctga aaaacaagaa caacatgcat tgcgtcaaga ctacttaagc atgatccgag
     4801 gacaagtatt aacaacattt tccacaataa aagtggttga tccaatcggt caggatgtca
     4861 caccagataa agtttatgat cttcgccaac aatacggtta tattcaaaat taatatttgc
     4921 tcacgaggta ttgcacttaa ggtgccaact gacctcataa acaaagccca tactgattga
     4981 agacactaat gtgtcgcacc atggtgcaca ttacgcttca tctctgtatg ggctttttat
     5041 ttattctttt gagaatttca ttttagcaga ccaaaaaatt aaaatggtgt ccatcaagat
     5101 ctttgaacat tgctccataa aacccttggc ttactgttgg ttcttgaacg actgtgccac
     5161 ccgcttcttt cactttattc accaactggt caacttcttc atttgtgttc acacctagag
     5221 aaatcatcac ttcatttggt tcagtattaa ggctttgctg acttacattt tgaaaatgct
     5281 tgttttctat taaaattacg gttgtttgac ctatttgaat gccgaccatt ttatctaaca
     5341 tttgtgggtt tctatttatt ttaaatccta acgctttata aaactgtgcg ctcttttcta
     5401 aatcttgcac atgcaaatta aaccacattg attgaatcat gattgcaccc cattcattac
     5461 ttattatagt tttggacttt aagccaatca cttaatgata atcttgttgg atttatttca
     5521 gccattaatt caaagtctac ttcataacct ttttcttcca accattgctt ttctgcaaca
     5581 ccactaacaa attctccttc tataacagta gatttacctg tcacttcact aaaaattgtt
     5641 gctgcttcac ttaatgtaac ttcatcggaa ccaatctcta ttgattgatg cgtaaagctt
     5701 tgtggatgtg caaaaatata cgatgcaatt ttagctatat caatagaaga aatcattgtg
     5761 aattttatat tcggattaat aaattctggt aatgtaatac gttcatcttc gactttagca
     5821 atgcgtaaaa aattatccat aaagaatgat ggtttgataa ctgttgcatt tatattagat
     5881 tccattaatc tattttctat ttttgctagt acttcaaagt gtgggccagt tcgatttcga
     5941 ttaacccctc ccgcagtact atacacaata tgttgaatat tttcttgctc agctatttca
     6001 attatcttca taccttgtct taattcttcg ctaacatcat ctttaacgat tggctgaata
     6061 ctgtataagc catacttacc tttcatcgct gattgcaaac taacattatc actcagatca
     6121 ccttcaacga ttgataaatg cggatgtcct atgtctgaaa gtttacgatt attcttattt
     6181 ctagttaatg cacttacata ccatccatcc tctaacaact gttttacaac tgcattacct
     6241 tgcttccctg ttgcgcctat tactaaaata tctttcattt tagatccact cctcttttta
     6301 tcttaaaaac caatagtcct ctttttcacc ttttaaatac gtatatggtt ctggtgtttg
     6361 tccatttcct ttaatattgt cgtttattac atctctgaca tcccatacta aatgaataaa
     6421 tcgttgtaat tgatgactaa aaatgcctag tggcgctgtc atagctaata ctttttccac
     6481 atcttctgta gtgacattca gtttttcagc aatcatttga accgataagg tagatgcttc
     6541 gaaatgtgct tgcaactctt cagctgtgat gcgtctttgc tctttattta aagacattat
     6601 caacactctt ttcttttatg atatttaata gttattgcaa attcattgct aactttctta
     6661 acacgtttta taataaacgg agagttatcc gtttgtcaat tttagagaat tttaagtagg
     6721 tgtaatcatg cgaaaagatg caaaagagaa taggcaacga attgaagaaa tagcgcacaa
     6781 actttttgat gaagaaggcg ttgaaaacat tagtatgaat cgtattgcta aagaactagg
     6841 tatcggtatg gggacattgt atcgacattt caaagataaa agcgatttat gctactacgt
     6901 catacaaaga gaccttgata tttttatcac tcattttaag caaattaaag atgactatca
     6961 ttctaattat gaggttatgc aagtgtcgtt agattatctt ttacaattta aaatcgataa
     7021 taaggcacta ctgcaatgta ttgaagcagg caacaataaa ttacgttttt accaaagcgc
     7081 attttatcaa gaattatttg atttttatta tgacttattt aaaagcgatg acgacactta
     7141 cacgaagttc aaaacagata tgctgttgca atcattatca actagtgtat ttgccttcca
     7201 aatagagcat cgccatattt caattgaagc gtacagaaat tatttattaa acatttattt
     7261 agatgaggtg ggacgtaatg actaaaattg tgttaatcac aggaggcaat aaagggttag
     7321 gctatgcaag tgcagaggca cttaaagcat tgggttacaa agtttatata ggttctcgga
     7381 atgatgtaag aggacaacaa gcatcacaaa aattaggtgt tcattatgta caattagatg
     7441 ttacaagtga ctactcagtc aaaaatgctt ataacatgat tgctgaaaaa gaaggccgtc
     7501 ttgatatcct cattaacaat gcaggtatat ctggtcaatt ttcagcacct tccaaattga
     7561 cacctcgtga cgttgaagaa gtatatcaaa cgaatgtatt cggtatcgta cgaatgatga
     7621 atacattcgt ccctctctta gaaaaatctg aacaacctgt tgtcgtcaac gtatcaagtg
     7681 gtttaggttc atttggaatg gttacaaacc ccgaaacagc tgaatctaaa gtgaattcat
     7741 tagcttattg ttcgtctaaa tcggcagtaa caatgctaac gctacaatac gctaaaggat
     7801 tacctaacat gcaaatcaat gctgctgatc caggcgctac aaatactgat ttagttggtg
     7861 attttagtaa taattccaaa cacgtttctg aaggaatcaa gccaatcatt caattagcaa
     7921 cgattggtgc agatggccca acaggtacat ttattaatgg cgatggagag atgccttggt
     7981 agatcaattt tatgttacaa acattgaaat tagaggtata taaaaaatgc ttctgcaata
     8041 gatgcaataa acatgcaata caatatggag gcgaagtaaa tgaaaagtat tacgtttgaa
     8101 gaacattatg tcattgaaga tattcaaaaa gaaacgatga atgcgatatc agcagatcct
     8161 aaaggtgtac cgatgaaagt aatgttagaa ggccttgaaa aaaagacagg ttttacaaat
     8221 gccgacgaat tatcacatca tgatgaacgt atccaattta tgaataatca agacgttcaa
     8281 attcaagtct tatcttatgg aaatggttct ccttcaaatt tggttggtca gaaagccatt
     8341 gaattatgtc aaaaagcaaa tgatcaattg gcaaactata ttgcacaata tcccaatcgc
     8401 tttgtaggct ttgcaacttt acctatcaat gagcctgaag ccgcagcgcg agaattcgaa
     8461 cgttgcatca atgatttagg attcaaaggt gcgctcatta tgggacgtgc acaagatggt
     8521 tttcttgatc aagacaaata tgacattatt ttcaaaacag ctgaaaattt agacgtaccg
     8581 atttatctac atcccgcgcc agttaacagt gacatttatc aatcatacta taaaggaaat
     8641 tatcctgaag taactgcggc aacatttgct tgttttggtt atggttggca cattgatgtc
     8701 ggcattcatg caatacatct agtattatct ggtatttttg atcgttatcc aaagttaaat
     8761 atgattattg gacattgggg tgagtttatc ccattcttct tagaacgtat ggatgaagct
     8821 ttattcgctg aacatttgaa ccaccctgta agctattact ttaaaaataa tttttatatc
     8881 acaccgagtg gcatgttaac gaagccacag tttgatttag tcaagaaaga agtaggtatt
     8941 gatagaattc tttatgctgc tgattatcca tatattgagc ctgaaaaatt aggtgtattt
     9001 ttagatgaac tgggtttaac agatgaagaa aaagagaaaa taagttatac aaatggtgct
     9061 aaattattag gtttatcacc taacaattaa caaatggagg tcattgaata tggaaacttt
     9121 agaattacaa ggcgctaaat tacgatacca ccaagtcgga caaggacccg tgctcatctt
     9181 tattcctggt gcaaacggta ccggagacat ttttctgcct cttgcagaac agttaaaaga
     9241 ccattttact gttgtagccg ttgatcgtcg tgattatgga gaaagcgagt taactgaacc
     9301 actccctgat tccgcttcaa accctgacag tgattatcgt gtcaaacgcg acgcacagga
     9361 cattgccgaa cttgcaaagt cattaagtga tgaacctgtc tatatattag gttcaagttc
     9421 aggttcaatc gttgcgatgc atgtgttaaa agattaccct gaagtcgtta aaaagattgc
     9481 atttcacgaa ccaccaatta atacattttt accagacagt acttattgga aagataaaaa
     9541 tgatgacatt gtgcatcaaa ttttaacaga aggcttagaa aaaggcatga aaacatttgg
     9601 cgaaacatta aatatcgcac caattgatgc aaaaatgatg tctcaacctg ctgatactga
     9661 agaaggacgt atagaacagt acaaacgtac gatgttctgg ttagaatttg aaattagaca
     9721 atatacgcat tcaaatatta ctttggatga tttcacaaaa tacagcgata aaatcaccct
     9781 actaaatggg acagattcta gaggctcctt cccacaagat gttaactttt atataaataa
     9841 agaaactggc atacctattg tagatattcc aggcggtcac ttaggttata ttcaaaaacc
     9901 tgaaggcttt gctgatgtat tattaaatat gtggggttaa ttgattgttc tctaataaaa
     9961 cagcttggac agttttcaaa ttatatttga tggctgacca agcttatttt tatttacgct
    10021 taaacgttca aatcaactcg ttattataca tgaaggcatg ttaaccattc tcttccactg
    10081 aaaacactac tgttccaaac attgatagtc ttcttttgaa ataccctttc cgataagcac
    10141 caaatattct ggcacttttt ttgaaaatgc tacaggtgtt aattcatatt gtccttgtgt
    10201 aaattgaatg agatacgtat gtgcggtgtc ttcaaatgtc ataaaccctt tcaacctata
    10261 aatatgagac ggaaggcatg ctaaacgttt tataaactct gctttagtac atttgactgg
    10321 tgattgcaca aattgatgat taatcatttg atgtaaagac ttatgtttat tgtcagaagt
    10381 tgctgtcatt tgtctaactg atattggcaa agtgacgctg ccatgcatac cgacttgtat
    10441 atcggcctct gggttaataa cttctaaatc tttcaatagt ttgctcgttg tttcaacatc
    10501 tgctgaatct attttattaa caaataagac agaacaatat gctaattgct cataaaataa
    10561 gccttggatg tctttaggga atgatttaat gtgtttatac atgcttgcgt ctattacacc
    10621 aatcatatgt gtaattgttg taaacggagc taaaataggc gttaaacaag catctaagac
    10681 agagaccggt tctgcaatcc cactacattc aataaataca atgtctggtt gctcttttaa
    10741 atataattga tgtaactgtt ctgatacatc tgctttcatt gcacaacaga tacacccctc
    10801 tgtcagttca cttaaaggta tgtcttcaga tactaaggca ccatcaacac tcattttccc
    10861 aaattcattc atgatgactg ctggtttcag cgattccttt aatgattcag cgagcaaatg
    10921 atttaagaca gtcgttttac cgccacctaa aaacccacct ataataacta ttttcatctg
    10981 cgactctcct cttatacttc atatgaatag catattccaa gatagatctc ctattgactg
    11041 acatgactct atattcagtt atagttcatt ttttttaaat aatcagcatt actattttaa
    11101 caatgatgcc tacaccaata actaaagaca atgatgtcac catttgcttt ccaattaatt
    11161 ttagtgctga ctgaccacct aaatgtttca aaagcatcgt cattgtgacc gagcacgctg
    11221 taaatgttga actaaaaaac acaagtagta gtaactgtgt tgctgtcatt ccttgtaata
    11281 aggcgccctg atgcaaatta aacaagagca tgccgtcttt tcgaatcatt gaaaataaaa
    11341 tccctggtga caattctgac gagatgccta ataacgataa tataggtgta aatatttgtg
    11401 ataaaacatt caaaattggc gttagtgata aaatactaac aataagacag attgtgataa
    11461 aaataggtag cgcttgaacg ataaacattt gtatattttg ccacatttgt agcaacattt
    11521 gacgtatatt tggcatatgt aattgcctat cataaggtag cggaacgcta agttgttgat
    11581 cattcttttt caaccatatc ctattatgta agatgccacc taaaagtact aatattaagt
    11641 acggcataaa tagccatgac tttccagcta cactaaaaat agataatgtc gcacctattt
    11701 gataactaca agaactacca aagcttatta aactcataca ctgtgtcttc gtgcaggtat
    11761 ggcattggtg tgctgcttgt gaaatagctg ctgcattaca tccaaaccct tctaatagtg
    11821 gcacgatatc attaccttgt aatcctatcc ataacattga cggttcaatt gcccatatca
    11881 tccatgattt gagtcctgtt tgatcaatta tagcagttga taaactaatc aatattacaa
    11941 ccggcaatgc ccatacgagc gaatatgttc caagtgatag cacaccataa tcaccaaata
    12001 atatatgctg taatatatcg tgattgagca atgttgtttg agttaaatat tctatccatg
    12061 ctgacacata ctgattttga aaccaatctg aaaattgata agcgataccg attggcaatg
    12121 caaacattaa aaatatcaac aaccaggcta aaaatgtcgc acttatttta ggtcttaaat
    12181 gtcgtcgctc atgttgaaat agtgtcaatt gttctatcac atgttcactc gctataggcg
    12241 aagaaactac actttctgcc aatgaaatat ctaatttctg ttttatgatt aataatctta
    12301 atttcgcttt ttctgttgcg gtaagtttat ccgcatgact aataaccaaa taatgaggtt
    12361 cattaggtat gggcgtataa tgcccagttc tcatatcata tttcacttct aacatgtgca
    12421 tgacacttca caacatgaat aatcatctaa atacatttga tttttttgat aattttcaat
    12481 gacatcttgt ttagctggta agccttcccg ctgtgttaaa agatgtgcaa gtactgcaaa
    12541 tcgcgctcta aatttataga tatagcataa tttggcatta tcattttcaa ctgttgcacc
    12601 aatcataaaa atattcggat aacgtgtcga ttcatcatgt gttgttaatt taatatcttg
    12661 atttgttgtc acaaataatt gttgaacgat tggatttttt gttgcatcaa agccagttgc
    12721 tagtattggt tcatgaggtg taagcacact ttgtccgcta tcaaaactga tatgatactg
    12781 tccattgtta aaatcaatat ctttaactgt ataatgtaca ttcatttcga tgcgagcacc
    12841 ttgcttaatg acattaccta gtcgctgacg tgtataaggt gacaatctaa cactaggatc
    12901 agcatccgga tcatttaaac cggttgtgct agtataaagt gcgatgtcag agccattttt
    12961 tgcaagttga tatgcagcat caaagccact ttcattacct ccgataacca catattgccc
    13021 cttattaaag ttatcaaagt cttcaatttc actataatga ataccatatt taaatggctt
    13081 tttagggaaa ttataatcac ctgttgcgac aaagatataa tccgcgtgat atatctctgt
    13141 tgtcgttgca atcgtataat atgcatcatc tacagatata tttgtgacaa ctgtattttc
    13201 aaagatattc agctcgtaat ggttggcaac cacttgtaaa tattcagcat atgtttctcc
    13261 ggaaatatgt tcttcattaa atgtaaatgc tggtgaagta tccatggaaa ttgcattcat
    13321 atcaggcatg ccaaatccat tagacgtaaa tgatggcgtg atcgtacggg tcgatttcgg
    13381 ccaatgttta aatgaatgtc ctactgttcc tttttctaaa ataatgacat ctgttatacc
    13441 gaaatctttt aaggtaatgg ccatacctat acctgcagca ccggcaccga taatagccac
    13501 tttatgatgt tgcatattaa cactccctca atgatctatt tcaagttatt gtttttgatt
    13561 ataaatcgta ataattacga tttataaagt atagacctat ccttgagaaa tttcaatatt
    13621 aaaagaaaaa cttccgttat tgtagagaat tcatctacat ttcggaagtt ggtatgtgtc
    13681 tttttttaaa atttaaggct gctacgttta gttcaaatga ttatgaatga catttcatgg
    13741 tatcatccag cctcagtact tggagataac attttggcgg tgagacagaa atcatatttt
    13801 tacaaaattt atttcgtcgt cccaccccaa taaagaaaaa gtatttcttt attgttgtgt
    13861 aacttctcca cgttgtattt cactatccaa attttgtttc atattttcaa acaactcttg
    13921 aaatctaacc tcatcttgat cagaataacc tttaaaaata actgaatcta tattttcctc
    13981 gttaaaataa taaatttcat cttctacaac accaatcgga tatttacatg cagaatagtc
    14041 aaacatatac ttttgatttt caatttctac aattggtcct ctattaataa tcattaactt
    14101 ttgcgaacct tcttttaaat aaataatgct tcctattgtt tccatttatt ttcctccttt
    14161 gtcaccgtct caatttcaac attccttcgc atttccaagt caatcatctc ttcttccact
    14221 ttacgaatgc catgttgaat ttgctgttgc tgctcgtata acgcttccgt tgaacgtcgt
    14281 ttcgcaaaat gaaattcatc gcggaactgt tccatacgac tagccatatt gctactataa
    14341 taacgctcac ctaaatgttg atataattga tctatcgaat gattaagcgc atcactttca
    14401 tctatcaatg ctttaacctc tcgcttttca tcatataagt catccatttg ctcatgtttc
    14461 gctgtgatta ttttattgat ttcatccagt ttattcgaca tcatttcacc acgttttaat
    14521 ttttaccaat ttcattacca atcattacgt cagtttggtc aaaagcctca ccaacttttt
    14581 gtatattatc gctcgcagtt cgtattgctt cagcaacaga ttgattctta ctcatcaaat
    14641 catctatcac actatgagca ttattatttc cacttactgt tgtactttca tctttatccg
    14701 gtttcgacac attattacat gtttcaacag cgcttttaat agatgatgat gcactattgg
    14761 tcttaaaaat atcactttga actgtactca tcatttacac ctctctccat ttaaattatt
    14821 ttaaaattat tagaaactgt atcaatatat gatattcaaa cattcaatta tacttaaata
    14881 ttgttttatg attatattca aaattattgt atcaataaat atgtatcatt cctagaattt
    14941 tattgaacaa aaagttataa aatcactttt attgtaactc aaccttgttt tacattacag
    15001 aaattaacaa tagcgattaa aattttattt tccaacaata aaaacgcaca aatattttta
    15061 ttgaggcagc tgtatcgctt ctcattgtaa aaatatctgt gcatattatc tatttatctc
    15121 aatctaacgt cttaactaac ttgttgtatc ttgtaaaatc ttatccatag aatgcgcaac
    15181 actatcacgg tacatctcac caaatttcaa taaatggacc atcaataaat ataaacgata
    15241 aaattcaagt ctataggatg caccttttgc gagtggataa tgtttattat acgcatcata
    15301 aaattcgctc gtaaaaccac caaataccgt tgtaataccg atatcgaatt ctctgtcacc
    15361 atataatggc gctggatcaa ataacgccgg acgaccatct tgtaagaaca tataattacc
    15421 accccatagg tcaccatgta ataaagacgg tttactttga tgcttttcta attccgccac
    15481 aatttgacgt cgcactttgt catatacttt gatatcgttg gcatcccata gccctctatt
    15541 tagcaactca tctttcaaat ggtccaagcg tttgtcgaca aaaatggtac accaatcgtc
    15601 ttgccaatga ttatcaaaag aaatatcgcc accttcataa ggtaatgaga agccaaattt
    15661 gccttcttct tgttgctgac tgtgtaattg agctacgagt tgccctaatt ggcgttgact
    15721 ccctgaagcc ccttcttcta aatacgtcat cactaaatac gcatcaccgt taacctcgcc
    15781 acttgcaatt actctaggtg ccgtgatacc tgcacgttca aattcattta aacctgcaat
    15841 ttctgcagca taaaatgatt ctttacgtcc acgttggaca agtaagaaaa atgtatccgt
    15901 atctgtttcg actcgatatg cttcgtttac atcaccacca ctcactggtg aaatctcttt
    15961 aatatctttt aaaggtaaat gctctaacca ttgttcattc atacaaacac cttccaatct
    16021 acttacttta tactataata ttgcctaatt aggatgattt aatcttaaaa acgttattca
    16081 aacttgcgtc aattttcaaa actttttagt tttaactagg aaattatgta tggaaatgct
    16141 agtctattaa aagaatatat ttcacatata ttaagttgag gatagtaagc ctcaaatata
    16201 atgaaatagg agcatactca tgtacaaatt aattaaacct ttcttattca aaatcgaacc
    16261 cgaaaaagca cacggactaa ctatcgatgc attaaaaacg ttacaaaagt ttccggtttt
    16321 attcccagtc gtcgataaac tatttactta taagaatcca acgttatcac aaacgataca
    16381 aggtaatacg tacgacaatc caattggctt agcagctggt ttcgacaaat cttgcgaagt
    16441 accaaaagca ttggaacacc ttggattcgg tgctttagaa ttaggtggta tcacacctaa
    16501 acctcaaccg ggtaaccctc aaccacgcat gtttagatta ttagaagatg acgccttgat
    16561 aaatcgaatg ggcttcaata atattggtat gaacaaagca ctaagtcatt tgcgtaaaaa
    16621 tgcttatcaa gtacctgttg gtatcaatgt tggtgtgaat aaaatgacac cttatgaagc
    16681 gcgttatcaa gattatataa aggttattga tacgtttaaa cacgacgttt catttttcac
    16741 agtcaacatc agttctccaa atactgaaaa tcttcaaaac ttccatgata aagatgaatt
    16801 ttcaatgtta tgccaagctt taacagcatt taaaaaacaa catgatgtaa cagtgccaat
    16861 ttatttaaaa ctaacgtctg atatggattt cgatggctta aaagcactat taccagcgat
    16921 tactgagaca tttgacggta tcatcttagc aaacacaacg cgacaacgag atggtttaac
    16981 ttctgctaat aaagtcgaag aaggcggttt gagtggtcgt ccattatttg aacgtaattt
    17041 aaaattgatt aagtatgctt atcagcaaac aaatggtgaa tttttaatta taggtacagg
    17101 cggcgtattc agtactgaag atgcaatcaa aatgatgcgt cacggtgcgt cacttattca
    17161 aatttattca tcacttgtta ttgaaggccc aggtttaact aagaaaatga acaaaggcat
    17221 cgcacgttac ttaaaagatc atcattttga caatgtcagt gatattatag gactagatgc
    17281 ctaatccaac atagtcaaat aatactttaa aacttgctga atcgtcttat taaaattatg
    17341 atataactca agaagatata tttatcacca tttttcaaaa taatggctta aatatcacat
    17401 atcattaaat atagcgtttt ataacggagg cgtttgttat gactaaagaa acagataata
    17461 aaaaaacagt agcgacttct gacaacaaag acacacagca acaaaatcaa cctgaagaag
    17521 atgaacgtca aggtttgaat ggttatcgta aaacagatct tgatttagaa atcgagcaag
    17581 agctacgtga aatgatgaaa acaggagaaa atgaaacgaa aaatgactat aaaaagttta
    17641 aagtgttttc acttatttca acacttgtca ttgtcatttt agcaattata agatttgttc
    17701 ataaaatgat gtaattagag tgagacattg ttttatgtct caggatccag ttattcatta
    17761 tatctacaat atttacgatt atataaataa cccgagattt tagtatgatt catttcacta
    17821 aaatctcggg tttctatttg ataattttta atgggatatg gcatgtatac gttcttgcct
    17881 tttatctcat ttccaatgat taatctggat attgttctaa aaatgctttc gcttctttat
    17941 taactgtttt aaaatcaata ccttgttgca tcgctgcaaa gacacatcca caataacact
    18001 gcctaaagat attatagtca ttacacattt ctatggaacg ctcataacct ttacttttct
    18061 taaaatcact tggcaaatag ttcacatcgt atattttttg gacatccata ccaagttcat
    18121 tgattaattg tgcgttcttt ttaggtgata atgtgattgc actgccaaaa taatcatagc
    18181 catgttctac agctgctttc gctacaatat ccaaacgcat ttcaaaacaa gcggtacaac
    18241 gtaagccgcc ttctttttca tcagctaatt ctttatcctt caccattttc acaaacttat
    18301 gcggttcata aggtgcttca atatacttca cattcgcacc agtcttgcga ttaaaatctt
    18361 ccacaaattg ttcttgcact ttagcacgtc gtaagtactc atttttcgga tgaatatttg
    18421 aattcgcgaa ataaattgca atgtctgcat attgtgttaa aaactctaat gtatatgtac
    18481 tacaaggtgc acaacaacta tgcaataaga ttttaggtct gattgcttct ctttcccact
    18541 gcccgattaa tttcttcaac accttgtcat aattaatttt ttgatttttc attttactga
    18601 taataggttc agcattaatc atgatttaac ctcccacatt taatcattaa cttctattat
    18661 atatgattca tattaaatgt cagtcaaaaa agttagaaat tcattttaat gcatttatat
    18721 ttcgaaaatc ccttatgtat ctaaaagcat tttttaaact tgaattttaa aacactaaac
    18781 aacacatacg tctctgtgtc attttcattt tttgtatgtc atatatatgt ttacttcatt
    18841 taaatcaatt tcatcttata atttatcgtg tattttacaa aagattgact tcaattcatc
    18901 gtaaaagtta tacttttgcc attttttaat gtaacatggt gttagtaata aaaataatac
    18961 attgaggtgt tttacatgac agcattattc ccttatatcg cttttgaaaa ttcaaaagaa
    19021 gcccttgcat attacgaaga agtatttggt gcaactgacg ttaaacgttt agaagttggc
    19081 gaagaacaag cgtcacattt tggtatgact aaggaagaag cgcaagaagc aactatgcat
    19141 gctgaatttg aagtgcttgg cgtaaaagtg ttatgttctg attcttttgg tcgcgctgac
    19201 aaaattaata atggcatatc attattaatt gattatgatg ttaacaataa ggaagatgct
    19261 gataaagttg aagcattcta tgagcaaatt aaagatcatt cttcaattga aatagaatta
    19321 ccgtttgctg accaattctg gggtggcaaa atgggcgtct ttaccgataa atacggtgtt
    19381 cgttggatgt tacatggtca agactatact gcaatccaac aataatgtta ttgataaaga
    19441 tatcatttaa taagcttatg ttatttagca aggcaagcca ctctcgattc atggcttgcc
    19501 ttattttatt gtatattttt aattatcgtt gctggccctt gattgacaat cgtattaaaa
    19561 tgccttatta agtcaacttt gtctatacgg tttggatctt ctacccaatg tcttataaaa
    19621 gacaatcccg cacctgaaac ataactcatg aaataagaaa atggtatacc attaatttga
    19681 tcattttcat ttttataacg ttgtaaatga cacataatta aatcataaag tttttcgtgg
    19741 atatttgaat ctttacccat acgaaacatc aattgataaa atgcgatgtc tttttctatc
    19801 atttctatta aaacggtcat aatttgatgt atgttatccg tggataactt aactgctcca
    19861 tttaacttct catcatgaat gaagtctctt atttcctcca actgctggtc ctctaatttt
    19921 tcaagcaaat catacttatc ataataatgc gtataaaatg tactacggtt aacatcagct
    19981 aaatctgcaa tttgttgcac agtaatctct tctaattggt gttgatgtaa aagttcaata
    20041 aatgcatttc tcattgcaac ttgtgatttt ctaatacgtc gatctatagt catttatatc
    20101 aagtcctccc caatgattat aaacgttatg ttcattatcc cacaaatctc caacattgat
    20161 gattggcaca caatgtttac ctgtttaata taggtgatac aaacaaacag aaaaaggtga
    20221 taacaatgaa ccaacattta ctaggaaatc caaaattaac tgtaactcat gtcaatgaag
    20281 ttaaagccgg tattaaccac atcgttgtcg acagtgttca atatggaaat caagaaatga
    20341 ttatggaaaa agatgtcact gtggaaatgc gcgatggcga aaaattatat attaatattt
    20401 tcagaccaaa taaagatggc aaattccctg tagttatgtc tgcagatact tacggtaaag
    20461 ataataagcc taaaatcaca aatatgggtg ccctttggcc aacattaggt accattccga
    20521 catctagttt tacacctgaa gaatcaccag acccaggatt ttgggtgcca aatgattatg
    20581 ttgtagttaa agttgcatta cgcggtagtg acaaatccaa aggcgtctta tctccatggt
    20641 caaaaagaga agcggaagat tattacgaag tgattgaatg ggcagcaaat cagtcatgga
    20701 gtaatggaaa tatcgggaca aatggtgttt cttatcttgc ggtgactcaa tggtgggtcg
    20761 catcattaaa tccaccacat ttaaaagcaa tgattccttg ggaaggctta aatgatatgt
    20821 atagagaagt agcctttcac ggaggtatac cagatactgg cttttatcgt ttctggactc
    20881 aaggtatttt tgcgagatgg acagataatc caaatatcga agatttgatt caagcacaac
    20941 aagaacatcc tctgttcgat gatttttgga aacagcgtca agtgccatta tcacaaatta
    21001 aaacacctct actaacatgt gctagttggt ctacacaagg tttgcacaac cgtggctctt
    21061 ttgaaggatt taaacaagct gcatctgaag aaaaatggct atatgtgcat ggacgtaaag
    21121 agtgggaaag ttactacgct agagaaaatc tcgaacgcca aaaatcattc tttgattttt
    21181 accttaaaga agaaaataac gattggaaag atacgcctca tgtcatttat gaagttagag
    21241 atcaatttta taaaggcgaa ttcaaatcag cgtcagcgtt ccctttacct aacgcagaat
    21301 atacaccatt gtatttgaat gctgaaaatc acacattgaa tcatgcaaag attagtagcg
    21361 cgcatgtcgc acaatatgac tctgaagata aacaacaaga tgtaagtttt aaatatacgt
    21421 ttgacaaaga tactgagtta gttggaaaca tgaacttaaa actatgggta agcactaaag
    21481 actcagatga tatggattta tttgcaggta ttaaaaagtt agatcgtcgt ggtaatgaag
    21541 ttaacttccc tgattttaat catattgaaa atggtcaagt agctactggt tggttacgcg
    21601 tatcacatcg tgaattagat caagaaaaat cctcaatcgc gcaaccttgg cataaacatg
    21661 aaacagaatt aaagttgtca caagatgaga ttgtacctgt tgaaatcgaa ttgttacctt
    21721 caggcacgct atttaaacaa ggcgaaacat tggaagttgt tgtaaagggt agtgaaattg
    21781 taattggtaa tagtactcct ggcatgaaaa cacgttatga acatgaagaa accgtaaata
    21841 aaggcatgca catgatttat actggtggta aatatgattc acaattaatc attcctatcg
    21901 ttaattgata tgcagcaatt acggtcgctt ttgattaaaa gtgacatagt gataggactg
    21961 tataacaaga gaaagccaca cgcttggaat cttaaaccaa ggtgtggccc tttttattat
    22021 tgatggctat ttaattttat aacactatcg tattttcttt ttcatgaatc atttcaataa
    22081 tgacattatc ttcattcatt actgctactt taggtgcatg gtttttaatt tcttcttcat
    22141 tcaactgtgc ataagtcatg attatgacta catcgcctac ttcaacaagt cttgacgctg
    22201 caccgtttaa acaaatttta ccactacctc tttcaccagc tattacgtat gtttcaaaac
    22261 gtgcaccatt attattattc acgatggcta ctttttcatt tggcaagatg tctaccgctt
    22321 ccaatatatc tgaatcaatc gtaatgctac ctacataatt taaatttgac tcagtcactc
    22381 ttgctctatg aattttagca ttcatcattg ttcttatcac tttattcagc tccaattatt
    22441 atattatcta ttaaacgcgc ttttgaaaat ttaacagcta acgagataaa tatgcgtcca
    22501 gttatttcgt gttgttctac taattgagga taactataaa cagcaacttc ttcaatgcgt
    22561 ccacttatat gtgattcaag atattcagta accctgtcta taattacttt actttgacgt
    22621 tcaccgtctt gatacaacgc ttgtgctaat agcaaacttt tacttaaatg taccgcttct
    22681 tgtcgttctt gctccgttaa ataaacattt cttgaacttt tcgccaaacc atctgcttct
    22741 cgaacgatat caataccaat aatttcaacg gcatgattga agtcttttac catttgctcg
    22801 acaatagcca attgctgggc atctttttta ccaaaataag cataatccgg cataacaata
    22861 ttaaatagct tattaactac tgttaccacc ccatcaaaat gccctggacg cttcgctcct
    22921 tctaacacat cagctaatgg gcctactttg acatcaatac ctaattcacc tggatacata
    22981 tcttctactg caggatgaaa aacaatgtcc gctcctactt ctgatactaa ttctaaatct
    23041 ttatcaattt gtctcggata agcatcgaaa tcttcgtttg gaccaaattg taatggatta
    23101 acaaatacac tcacaattgt aatatcattt gtactaactg attcgcgtac catcgttaaa
    23161 tgtccatcat gtaaggcacc cattgttggg ataaaaccaa tcgttgtgcc tgagcgtttg
    23221 gctgctttaa caatgtgttg catctctttt accgtagtaa tcagcttagt cattgttatt
    23281 aacctcattc ataattttct ttttatacgt atattcttct gatggaaatg caccagattt
    23341 aacttcttga tcgtattgtt ttaaaccatc cacaccaaca ctaaaatcag caaattgctt
    23401 cacaaatttc gctttatgtt caacaccata atttaacata tcgtgataaa ccaatacttg
    23461 accatctgta ccttttcctg caccaatacc aatgactgga attgttaagt gcttgctaat
    23521 ttcttctgct aaatcatttg gaattgcttc aagtactaac gcaactgcac cagcttgttc
    23581 tacatttttc gcgtctaaaa taagttgctc cgctgcttct ttcgttgcac cttgtaattt
    23641 ataccccata acgccaacac tttgaggtgt taatcctaaa tgtgcaacaa caggaatacc
    23701 aattgccgtt gctttttcaa taaatggtgt aatatgcgct ccttctgctt taattgcatt
    23761 tgcattcgtc tcctgataaa gctttagagc atgatttaag tcttgtgtca tagagatgcc
    23821 tactgcacca atcggcatat caacaactac aaatgtattt ggtgcgcctc ttcttactgc
    23881 acgaccgtga tgaatcatat ctgctaacgt cacttgtacg gtactttcat aacctaatac
    23941 agtcatacca agtgaatccc caacaagaat catatcaata cccgctgctt ccacttgttt
    24001 agcacttgga aaatcataag ctgttaccat agaaatttta gtttgctttt gtttcatatc
    24061 tattaattga cttactgttt tcaatgttat tcaacctctt tttgcagtat tattagaaat
    24121 agtataatga atcttttata gaaaggaaag aagaagatgt tatcagttgc gattatcggc
    24181 ccaggcgctg tcggtacaac tattgcctat gaattacaac aatcattgcc tcatacaacg
    24241 cttatcggga gacacgccaa aacaataaca tattatactg taccacatgc acctgcacaa
    24301 gatattgttg tgaaaggtta tgaagatgtc acaaacacat ttgatgttat tattattgca
    24361 gtcaaaacac atcaacttga tgcagttatt cctcatttaa ctcatcttgc acatgaggac
    24421 acgctcatca ttttagccca aaatggttat ggtcaactcg aacatatttc atttaaaaac
    24481 gtatgccaag cagttgtcta tataagtggt caaaagaaag gcgatgttgt tacgcacttc
    24541 agagattatc aattacgtat acaagataat gcattaactc gacaatttag agatttggtc
    24601 caagacagtc aaatcgacat tgtattagaa gcaaatattc aacaagctat ttggtataaa
    24661 ttgttagtta acttgggcat taattctatc acagcactcg gtagacagac cgttgcaatc
    24721 atgcataatc ctgaaatacg tacactgtgt agacagctat tactagatgg ttgtcgtgtt
    24781 gcacaggcag aggggttaaa cttttcagaa caaactgtcg atactattat gactatatat
    24841 caaggttatc ccgacgaaat gggaacgagc atgtattacg acattgcgca tcagcaacct
    24901 cttgaagtcg aagcgattca aggctttatt tatcgacgtg cacgtgaaca caatcttgac
    24961 accccatatc ttgatactat ttatagcttt ttacgcgcgt atcaacaaaa tatgtaagca
    25021 catatataat ataaaaagac cttaacgatg catttagaac cacctgttcc taatatcgct
    25081 aaggtctttt aattatatta gactattcag cttctctaat ttcttctgcc acatctttat
    25141 agtctatttt cgctttaaca aacgtctcgt tatttaccgg gaaatgttgt tggaatgttt
    25201 caaagttttg tatctcaacg acaacgtcat ccacttcaaa gtcaagaaca tgtccaccat
    25261 aagctctttc atcatccgca aaatgtatat gaaaaccagc agaccctacg ccatgaaata
    25321 attctggtgt aaaaaatcca acaatggcac cacgaatatc ttgtcttttt tcctcaggtt
    25381 gtctgcgtgc tgaatcaatc aaacgtgtat atggcggttg ctgagcaggc atcattcgta
    25441 catgcatatg tttaaatgtg ccataaattt taacagccga aaataaattc tcacttaaca
    25501 tttcattttt aatttgtgca aatacatcat cttgtgataa ttgttgcaat ggaaatgtct
    25561 tactcgcttt aaaattagta atcgatgcat acggtacttt ctcatcgcct tttaattcta
    25621 taaattcttt atgctcgtta gcatgatatg cctttccgtc taaaaatatt acttcgccat
    25681 cagaccctgt taacgttgca atccctaaat tcccatgttc taacaattca ttaattgtag
    25741 ctgtgccttc tagtaagcca gccattaacg tacctaatgt accatgttga tacaagacat
    25801 tcgtcattcc aaaaccatct ccctatagtt attcctcgtt gtcatgctct acttcgtgat
    25861 taatgcagaa ctactttcct ttatactcaa tgacgcctca acatttttat tcatgtcact
    25921 aaattttcac gagtcataat actttattca attattattt tacgcaaaag tattgcctct
    25981 atcaatgctt gctaaaaaaa tggacctatc agtgccacgt gttactgcaa cactaataga
    26041 tcctcttacc attaaaatat ttctaattaa tacttaaaat aggcttagtc ttctaataaa
    26101 tatttaattg aatcaaatgt atcttctaat gttttaacag atttatcgaa caacgcttgt
    26161 tcttcggcac ttaatggcat ttcataaatt ttaactgcgc catgttggtt aactaatgtt
    26221 ggtacaccta ggtaaacgcc tttgtgacca ccatattgac catctaattg tatagaaaca
    26281 tttaagacat tattttcatt atttaaaatg gcttttgaaa tgcgcatcaa tgctaatgca
    26341 ataccatagt atgttgaccc tttagcttgg ataatttcat aagcagcgtc acgtgtattc
    26401 acataaattt cttccgcttt agcttcgcta ccagtttgtt cttttaatgt gtcatatact
    26461 gaaatacctg ctacatttgc ttgtgaccaa actgcaagtt cagtatcacc atgctcgcca
    26521 ataatactag cgtcaacact tgaaggtgca acaccaagtt cttggctaat taaatattgt
    26581 aaacgtgcac tgtccaatac agtacctgaa ccgataacac gctctgctgg taatccagta
    26641 tattctttta caaatcttgt taaaatgtct acagggtttg ccgcgattaa gaaatatcca
    26701 tcaaagccac tatccataac actcttaacg atgctcttca taatcttagt atttttttca
    26761 actaattgta aacgtgtttc acctggcttt tgaggtgcac cagctgtaat aacaactaaa
    26821 tctgcatctt tacagtcttc gtattcacct gctttcacat caactggtga aggactgtgg
    26881 actgtaccat ggtttaaatc ttgaacatct gcttttactt tgtcttttgc aatgtcaata
    26941 attacaaatt catcagcaac accttgcgta accattgcaa aggcatagct tgatcctaca
    27001 gatccatctc cgattaatac aaccttttta ccaaatgttt tcataattat gtctcctaac
    27061 ctaattgaat ttattttaca cgtgactaca cgtaaaaata tctatactga aattaaagat
    27121 taacaatttt attttattat aatattatgc taccaaatta caaacataaa actgagatgt
    27181 aagcggagtc aaattacact ctatcgccaa taaatattga tatctcaagc tttagcacgt
    27241 aatttgaaat ttgtgacaat ttttagcatt ctaaaattgc gtaacgacgc tatttaaagg
    27301 ctttaacaaa ctattgagct ttctattttt ttcattttaa aaaggatggc tattcgactt
    27361 aaatgactta ctatataacc tcctattttc cgccttaccc tcatcatatt tgatgcatca
    27421 ttttatagtc aaagaattac atttcataca aactagccaa tcagacataa acatgaaatt
    27481 gattttaaaa atataatgtg caaaattgtt agaaaattag caaaaaatag tacttattca
    27541 tttaatatct gttataatca gttttatcat ttaaaaaatc tatggatgtt atcaagacaa
    27601 gtcattaata cgtaacataa agttgtgatt tttcagaatt tttagacaaa atattgatta
    27661 tttgtgctat gatataacat attaaaaaac accgtataga attgtttatg aatgtttggg
    27721 aggaaagttt atgggaagtt ttttcaataa aatagcacga aaagaggatc cggctatcta
    27781 tcaaaataaa gatggtcatt taaagcgtac acttcgggtg cgtgatttct tagctttagg
    27841 tgtaggaaca attgtatcga catctatctt tacgctacct ggcattgttg ctgcagaaca
    27901 tgcaggaccg gccgttgcgt tatcattctt actcgctgct attgttgctg gtttagttgc
    27961 atttacttat gcagaaatgg ctgccgctat gccatttgca ggttcagcct attcttgggt
    28021 caatgtatta tttggtgaat tttttggatg ggttgccggt tgggctctat tagctgaata
    28081 ttttatcgcc gtagcctttg ttgcatcagg attctcagcg aatttacgcg gacttgtgaa
    28141 accaattggc atcgaattac ctgcagcatt atcaaatcca tttggtacaa atggcggttt
    28201 tatcgatatt attgctgcta tcgttatttt attaactgca ttattactat cacgtggtat
    28261 gtcggaagca gctcgtatgg aaaatatttt agttatttta aaagtattag ctattatttt
    28321 atttgtcatc gtaggtttaa cagcaataaa tgttagtaac tatgtgccat ttattccaga
    28381 acacaaagta actgctacag gtgactttgg tggatggcaa ggcatatatg ctggtgtttc
    28441 aatgattttc ttagcgtata tcggtttcga ttctatcgca gcaaactcag cagaagcact
    28501 tgatcctcaa aagacaatgc ctagaggtat tcttggttct ttaagcgttg ctatcgtatt
    28561 atttattgct gtagcacttg tgttagttgg tatgttccat tactcacaat acgcaaacaa
    28621 tgctgaacct gttggttggg ctttacgtca aagtggtcat ggtgttgtag cagctattgt
    28681 tcaagctatc tctgttatcg gtatgtttac agcattaatt ggtatgatgt tagcaggctc
    28741 acgtttactt tattcatttg gacgtgacgg cttattacct tcatggttaa gccacttaaa
    28801 cgacaaacat ttacctaatc gcgcactagt tatacttact attattggtg ttttaattgg
    28861 ttctatgttc ccattcgcat ttttagcaca attaatttca gcaggtacac ttgttgcatt
    28921 tatgttcgtt tcattagcaa tgtatcgttt gagaaagcgt gaaggtaaag atctaccaat
    28981 tcctgcattt aaattacctt tatatcctgt gttaccagca attacatttg ttttagtatt
    29041 gctagtattc tggggattag gattcgaagc gaaattatac actttaattt ggtttattgt
    29101 tggtatcatc ctatatttaa gttatggact tagacattct aagaaaaatg acgtagctga
    29161 ataccaccca ccaaaataaa aaataaaaaa aatcatttcc catctgatta acatccagat
    29221 gtggaaatga ttttttattt tatattaaga taatcgctat taccaacctt gtccagatat
    29281 gtcatattga tctaagttac ctgcttccaa agcagtcagt gcatcttcta tagtgtttaa
    29341 cgccgtgtct aattgctcat atgttattac caatggcggt tggaatcgca acacatttcc
    29401 tgctacagct ataataacta cgccatgctc aaagcagtaa ttacaaattt taagtgccgc
    29461 actggcatca cgtgttttga gttttttgtc ggaaacaata tcaataccaa tgctcagacc
    29521 tttacctcta acatcgccta cactattgta tttagatacc cattgatcca ttcgtttcct
    29581 aacatattcc cctttttccg cactagcctg aagaagcgac tgatcttcaa tcatttgaat
    29641 tgtggctaat gcagcttcac aactaactgg attagcacct gttgtaaata aatgtgctgg
    29701 tgcttctaaa caattcataa tctctttgcg tccaacaatt gctgacatag gcataccacc
    29761 tgctaaggat tttccgaaag tgattaaatc aggcgtaaaa ttaaaatgcg agactgaact
    29821 ccatgtacct gttctcccaa aaccttgttg aatatcatcg acagcgatta aaataccatg
    29881 ttcacgacaa atcttttcta acgcttcaaa ataccctgga actggttcta aaagtccacc
    29941 atcgccttgt atcgtttcaa taacaataca tgctacttcg tcagcaggta catacttcgc
    30001 aaacatttct tttaagggtg ctaaatattc ttctactgaa ttagcttgtg gctgctcgta
    30061 cataccacga tatttatctg gaaacggaat atgataaaaa ccattcaata acggaccata
    30121 atgtttgcgc atatttaaac taatagctga catagacaat gagccaaaag ttgaaccatg
    30181 atatgcatta gtgaaactaa tgatataagg acgccctgta tatgctctgg caaatttaat
    30241 gatgccatca tttgcgtctg atccggttaa tccgaaggtc actctttttt caaaatctcc
    30301 aggtgcaatc tcacaaagct tcttagctaa acgtaccaac ggttcatgat acatatatgc
    30361 tggtgtataa tgaataaatt tatcaacttg tgcctttatc gcttctgtta cttctctagg
    30421 tgcatgacct acgttttgag aactcgcact cgataacaaa tcgatatatg tcttcccctc
    30481 aatatcaacc aatgttgctc catatccatg atcaatcact aacggataat atttaatacg
    30541 tcctgatttc gcaaaataat gttcatcctc ttgaattaat tgatgtgctt tactcatata
    30601 cattcccctc ccattgacag tattaatgtg caagcaaagt ggcctctctt aaatcgatta
    30661 taaaatccga tttaaaatcc tgctcaaata ccgtcatgcc tctatgaata ctatccaata
    30721 tactaataaa attcagattt gtaaatatat tctgataatt aagaatttta tatcaatcta
    30781 ctttgtttat gcgcataatt ttgttcgatt agggaattgt ttactatatt ccatttgact
    30841 ctgaggtgat acgaatgcgt ttaaaagtat tgttccattt cattgctgct attttcatat
    30901 cattcatgtt gctatggatg accatgttgt ttgacttaat aagcaatcaa tcacatttaa
    30961 aagctttatt attgaattta gattttctaa ttccttctga caatacacca tatattctag
    31021 aaataatatg tcacttacta attggtagcg tcatttattt tgtatttgtg ttgctgtttc
    31081 atacttctaa aaggctttac tatctatgtt atatcccttt atttttctta tttatagcat
    31141 tgtatccctt tttagtattt attgcgcaac gtccaatttt tcaatttagt gtgacagaat
    31201 taatcggttg gattattaca catattttct ttatgtcatt aatggcgtta gtcataccta
    31261 gaataaaata atatttttaa ttaaactgac aattattttt cacattttat acacttttca
    31321 aggtttatga cttgagaaat gttctcattt ttatcatact ggaggtgtat tgaaaagtta
    31381 aggagtggaa agtatgaata aagagcaatt agaaaaaatg aaaaatggaa aaggctttat
    31441 tgccgcatta gaccaaagtg gtggtagtac accaaaagca cttaaagaat atggtgtaaa
    31501 cgaagatcaa tatagcaatg aagacgaaat gttccaactt gttcacgata tgcgtacacg
    31561 tgtggtaact tcaccttcat tctcaccaga taaaattttg ggtgctattc ttttcgaaca
    31621 aacaatggat cgcgaagtag aaagcaaata cactgcagat tacttagctg ataaaggtgt
    31681 tgttccgttc ttaaaagtag acaaaggtct tgctgaagag caaaatggtg ttcaattaat
    31741 gaaaccaatc gacaacttag acaatttatt agaccgtgca aacgaacgtc acatttttgg
    31801 tacaaaaatg cgttctaaca ttttagaatt aaatgagcaa ggtatcaaag acgttgttga
    31861 acaacaattt gaagttgcta aacaaattat tgctaaaggt ttagttccaa ttatcgaacc
    31921 agaagttaat attaatgcaa aagacaaagc tgaaattgaa aaagtattaa aagctgaact
    31981 taaaaaaggt ttagatagct taaatgctga tcaattagta atgttgaaat taacaattcc
    32041 tactgaacca aacttataca aagagttagc tgaacatcct aatgttgttc gtgtcgttgt
    32101 attatcaggt ggttacagca gagaaaaagc aaatgaatta cttaaagata acgctgaact
    32161 tatcgcaagt ttctcacgtg cattagctag tgatttaaga gctgatcaat ctaaagaaga
    32221 attcgataaa gctttaggtg atgctgtaga atcaatctac gacgcatctg taaacaaaaa
    32281 ctaatttata cattaaacta ttttttgata taaactacta aaaaggactc atacatgtgc
    32341 tttaaaggca ttgtgtatga gtcttttttg attaaagttg attttgccgt atgtattaga
    32401 ttacgtaaaa aaatcggaca gctgaaaaat ctttaagatt tctcagttgt ccgattttaa
    32461 atatagctat tagaatttag ttttcgtagt aacctaattc taagtctttt gaagtttgtt
    32521 tacggatttt tctcattaat ttttcgtctt caattaatga ttcaccgtat gatggaatca
    32581 ttttcttaat tttaggtgcc cattcagttt tgtattcagg gaagttacgt tctaatactt
    32641 ctaacgcaac tgaaactgaa gttgaagccc ctggtgattc acctaataat gcaattacag
    32701 tgtggtcttg tgagttaacc acttctgtac cgaattggat gaatccttta ccgtgttcag
    32761 gtgtatcttt gataacttgt acacgtttac cagcagtgta taattgccaa tcttcattac
    32821 gtgcttctgg atagaaagta cgtaagtggt tcatacaacc ttcttttgtc ataattactt
    32881 ggtcaaatga gtatttaatt aaaggtaagt ttttaactgc tgctgctaat aaagttgtaa
    32941 tgttgtatgt tttaacagac ttgaataaat ctaagttaga accatttttc aagaatttag
    33001 gtccaacatt agcaaatggt ccaaataata atgttctttg accatcaatg taacgcgtat
    33061 ctaaatgagg tacagtcatt ggtggtgtac caggtggctc tttaccataa actttggcat
    33121 cgtgttgttc aataacttgt gggtttgtac aagctaagaa ttgaccactg atagggaatc
    33181 cacccaaatg tttactttca gggatacctg ttttttgtaa taatggaatt gctccaccgc
    33241 cagcaccgat gaatacgtag tcagttactt gtttgaattt ctcaccagtt aggcgatttt
    33301 taacagtaac ttcccattga ccatttgata attgttcaaa atcaacaact tcatggttaa
    33361 attgcactgt agcatttgga tgtgcttcaa tgcttttagc cattttacgt gttaattcac
    33421 cgaagtttac atctgtacct tcgtcaattt tacttgccgc catgatacca gggttatctt
    33481 cacggccttt catcatcaat ggaatccatt ttttcattac ttcgatgtct tcagtatatt
    33541 cgatattatc gaacataggg aaagctttca tcgcttcgta acgatctttt aagaatttaa
    33601 cattgttttt acctctaaca taactgatgt gtggtaatgg attgataaat tctcttgggt
    33661 tctcgatgct accgcttttc actaagtgac cccagaattg ttttgaaatc tcaaactctt
    33721 cgttaatcac tttcgctttt tcgatgtcga tagaaccatc aggttgtaaa actgtgtagt
    33781 tcaactcaca taatgctgca tgacccgtac cagcattatt tctttcgttt gaactttcga
    33841 ttgcaggacg atccaagcgt tcgtaaacgt ggatattcca gtctggctca atttctttta
    33901 acattgaacc aaatgttgtg ctaagtacac cggctccaat taaaacgatg tctttactat
    33961 tagacttagc cattggtttc acctctccaa aaattgtaaa tgtgtatcat caatatgaaa
    34021 gttacataaa actgacatat ttctttaaaa tatcaacgcc attgataact tcctgtttta
    34081 attgatacgc tgtaacaaaa tactatagtt agtgcttaca tgtatatgtt aaagcaagca
    34141 gtggtaaatg taaattataa ttattcatta actttgcaat atattaaatc ttttattcat
    34201 agaagataaa tatcaaatca atcataatta tttgacaaca aatagctaac gattgtttta
    34261 atctacattt ggcttatagc attttaaacc tatactctat tttgatacaa tataagtgta
    34321 aaatcaatca taaaaaggat attcaatatc tgcatccaag aaaaacatta caattacctt
    34381 taatattgaa aattattttg aatcttgcac ttataggtat tgtaattatc gttctaacac
    34441 atactgagtt tcaacttaat gccggtgata gtaatgtgtt tttattaaac tgggatattc
    34501 gaggtttaac atcttatatt ttctcattct taatactggt tgcgcttgtt tctaaactaa
    34561 ttttaatatt tataactaga cgacaaagaa catcataaat aaacaagcag tccagtgcgt
    34621 atcatcatac cttacgcatt ggactgcttt gctatgttta ttgattgcta tctttttgtt
    34681 gttgccattt ttctatttca gcatctcgta gttcaacacg acgaatttta cctgagtttg
    34741 tttttggtaa gtcgtcaacg aattcaatct ctctcggata tttatatggt gcaacttcat
    34801 ttttaacaaa ttgttgtagt tctttaacta acgtatcatc acccgcagta tggtcctgta
    34861 aaataacgaa tgctttaaca atatttcctc gtatatcatg aggttttgct actacagcac
    34921 attctttaac ggctggatga ttcgttaacg catcttcaac ttcaaaaggc ccaatcgtat
    34981 agcctgaact aataataatg tcatctcgac gtccttcaaa ccagaaataa ccatcatcat
    35041 ctacatgagc taagtcacca gtgatgtagt atttacctgt ttgcgctttc gccgtacgtt
    35101 ctggctcttt ataataccct ttgaaaagtg ctggcaaatc aagtggtact gcaatattcc
    35161 ctttcgtatt agcaggtacg ctattcccct catcatctac tacagtgacc gaactacccg
    35221 gaatgccttt acccattgat ccaatcctct gtggtgtatc ttttaaaaag cctataagca
    35281 aggtactttc agtctggcca tatccatctc ttacagttaa attaaagtat ttcttgaatt
    35341 gttcaactac ttctcgattt agtggctcac ctgcagaaac ggcactatgt aaatgcgtta
    35401 agtcataatc atttaagttc tgtaatttag ccatcatacg atattctgtc ggtgtacaac
    35461 ataaaacatt aatttgatat ttttgaagca attctaagta tgtttcagga ctgaaccttc
    35521 cattaaatac aaaagcagtt gcacctgaac ctaatacaga taagaaagga ctccataccc
    35581 atttttgcca acctggtgct gctgttgccc aaactaagtc atcttcatta atacataacc
    35641 aatgttttgg tgccatttgt aaatgtgcaa atccccatcc atgacaatgt gtaacggctt
    35701 taggattgcc agttgtacca gatgtatatg acagaatcgc catatcatca cgcgtcgtat
    35761 ctgccatttc tagtttgtta cttgcgtttt ctttttcagc ttcaagtgaa atccatccat
    35821 ctttttgacc ggcaataaca aatttagtta acgcatcata ttctttaatt ttttcaaatt
    35881 caactgtgaa tggctctagt gcaataactg cattaatttc accatgtgtg atacggtatt
    35941 gtaaatcttt agttcttagc atttcagaac atggaatgat tgcaacacct aattttaaag
    36001 cagcaatata taattcatac gtcgcaatag atcgtggcat cataatgagt actttatcgc
    36061 ctttagataa accgtgcgat gctaaaacat tacctacttt attagactgt tcaatgagct
    36121 gttggtaagt gactgatata tcttcgcctt cagtattatg atataaaatt gcctttttat
    36181 ctggtatgtg gctatatttt tcgatttccg aaataatgtt atatttttca ggcgcgaata
    36241 gagctgactt ttgcataact aacttccttt catacatcca cttttcctgt gatgaacatt
    36301 gtaattttat aaatgaatta tatacatcat acgcctatct ttacagaatt ttcaattaaa
    36361 tagggttaaa taccaaagtc ctcgacacta cactttgaca tgacgtagca ttcaaggact
    36421 ttcaaatgat tgagggttga tatctcgggc tagaccatat cagctaattc aatacgaata
    36481 ttgtatgata attcacgatt aattattttt acatctgcac ctttcgaagt gccacgatgc
    36541 ttgtgtgtat gcttgtactc agctgaattt tgccaatgat aaaatgcttg cctattttcc
    36601 cacagcgtaa taatgatata gtgtctacca gctgttctag gtcttaaaaa ccttaatgct
    36661 ttaaatccat caacgttttt taaatgctta ttacgtcgca aaaatttttg ctcgaatgtt
    36721 tcttcttgtc cttcgttaat atataaatga tttaacacac ataatgaatc atttgataaa
    36781 tcatttatcg cttctagcac atcgtaatat gcagtgtcat tatttttttg tattgtgaga
    36841 caatcatcca gttcttctat tacataactt ctatattcat cataaatttt cataataaat
    36901 gccttcattt catttatatt tttggtcata ttactttata tctattacta attcattccc
    36961 gtatttatta attacaatca tagtttggct tctttttaaa agataagact ttgtaaaaag
    37021 tattaatatt tcatgcaaat gggggacagg agtcgcccac tatttttgtg tcttcaattt
    37081 catgatcatt atttaacatt agtcatgaaa atagccgaca acttcatctg tgaaatcacc
    37141 ggccttttat tttagctaac tttatttctg attttacgat tttaattgat catacagaga
    37201 aagtgatctt tttacaattt ctaaaaactc atgatctata ttggacattt gatgaaaata
    37261 agacaaaatg ttttctgtta gcttctcttg ttttgggaat gaatcatctt ctttaatcca
    37321 aatcgctaat tcgcctaatg gtgttttatc atctttaaat gtttgtatat attcgtaaaa
    37381 gctcatagta ttccttctct caatttactt atataaatcc taccacgaaa gctttcaaga
    37441 aaacacaatt aaatgtctat ttagtgaact ttttaaggtt gtgcactctt ttaatgtctg
    37501 ccaattaggt caattaatca tcacaatgta caattaactc tattttcagt tcatatactc
    37561 acacaccgtt tttgaacaac acattaactt ctcatttaga taaaacgcaa aaaagcctgg
    37621 caccaataca atagatgcca gactaagagt ctactatata aatttattta gcgtatggtt
    37681 ttacttcgat tgcaccttca ttttcatcat gaacaccatg cttataataa tcaatatatt
    37741 gtggctctaa aggctttctg ccacgtataa tgtctgctgc tttttcagct aacattaaaa
    37801 caggtgcgtg tatattgcca tttgtcgtac gtggcatagc tgatgcatca actacacgta
    37861 aattttccat accgtggact ttcattgtta acgggtcaac tactgccatt ggatctgaag
    37921 caggacccat tttagcacta caagatgggt gtaatgctgt ttcaccatct ctacgaaccc
    37981 aatcaagaat ttcttcgtct gtttgcactt ctggtcctgg tgaaatttct ccaccattga
    38041 atggatccat tgctttttga gataagatat ttcttgctac acgaattgct tctacccatt
    38101 cttttttatc ttcttctgtt gataaataat taaagcggat acttggtttt tcgaatggat
    38161 ctttagattt gattttcaag ctaccacgag agtttgaata cattggtcct acgtgaactt
    38221 gataaccatg tgcgaccgct gccttttgac catcatatct tacagctatt ggtaagaaat
    38281 ggaacattaa gttaggataa tcaacttcgt tatttgaacg tacaaatccg ccaccttcaa
    38341 aatggttaga tgctgctgca cctgtacgtg tgaaaatcca ttgtaaacca ataaatggca
    38401 tgcgcttgat atctaagctt ggctgtaatg atacaggttc cttacattta tgttgaatgt
    38461 atacctctaa gtgatcttca aagttttcac ccacaccagg taaatgaaca cgtggctcaa
    38521 tgccttttga ttttaggaac tctgaatcac cgataccaga taattgtagt aattgtggcg
    38581 tattgaatgc cccaccagac aaaatgactt cattagcatc gatggtatgt agtttgccat
    38641 ttttcttata cgtaacacca gttgctcttc taccttcata atgaatttca gttacaaagg
    38701 cacgtgtttc aacggttaag tttttacgct tcatcgctgg atgtaaatat gctcttgaag
    38761 ctgacattcg gcgaccacga tgtacttgac tatcgaacgg tccaaaacct tcttgtctaa
    38821 atccattcac atcaggtgtt ttatgatagc ctgcttcaac acctgcatca aagaatgact
    38881 ggaataaagg attcgttgct ggccctcgtt ttaacttaat tggtccatca tggcctctaa
    38941 atttatcata aggcgctgca ccgtatgttt tttctaattt tttaaaatac ggtaaacagt
    39001 gcgcaaaatc ccaagtttcc ataccttctg gttctgccca gccttcatag tccattggat
    39061 taccacgttg ataaatcatg ccattaatcg aacttgatcc acctaaaact ttacctcggg
    39121 catgtgctac tttacgaccg cccatatgtg gttcttcatc tgttgaataa atccaatcgt
    39181 aaaatttatt gcctgaaggg aacattaacg cagcaggcat ttggataaat aaatcccaaa
    39241 aataatcact gcgacccgct tctaatacta agacttcttt atctttatct tcactcagac
    39301 gattacctag tacagaacct gcactgcctc ctccaatgat gacataatca tatgatttgt
    39361 ttttgttact catcgttatg acctccaaag tttgttgtat ttcaaagtga gtattgcatg
    39421 aaatatttgt tagtggctga ttggttatcg ttgaattgct aaacttagct aaccaaaaca
    39481 ctcgcttttc cttttacgat tgttactaac agtaatgaaa taatctatga ttcattttgc
    39541 gtttagtcca aattatcaat caacatttcg ccacttatac aaaacaaagt gagtgtcttg
    39601 tgttcttaca atggcactca ccttatctaa tttttatttg ctaaaccaat tcactaattg
    39661 tggatttgta tttgttaaaa tgtgttttga aacaaggtac tcttctaagc cttctttgcc
    39721 taattctcta ccgatacctg attgtttgta tccaccccat ggcgcttgtg caaaatatgg
    39781 atggaaatca ttaatccaca ccgttccaag tttcaacttg ttagcaacgc gttgtgcttt
    39841 tccaatatct ttagaaaata cagcacctgc taaaccatat atagaatcat tcgctaattg
    39901 aatcgcttct tgttcagttt caaagccttc tacagtaacg acaggtccga aaacctcttc
    39961 ttgtacaata cgcattgacg tatcacaatt tgtaatgact gttggctcga agaatagacc
    40021 atcttttaaa tcatctctat ctggacgttt accaccaaca gcaattgttg cgccttctgc
    40081 tttagctaca tccatataag attcgatctt attacgatgt tctgttgaaa tcactggtcc
    40141 catttcagta tcagcatcaa aaccattacc taatttgatt tttttcacgc gatcaataag
    40201 tgcttgctca aatttgtctt taatactgtt ttgtactaat attcttgatc ctgctgaaca
    40261 aacttgacct gcatggaaat atccaccatt taacgcttgg tctactgcca attcaaaatc
    40321 agcatcatca aagataatgt ttggattttt accgccaagt tccaaggcaa tattcgtaac
    40381 attattagca gcatttttca taatatgctt accagtctca atgccacctg taaatgatac
    40441 aaggtcaacc tctttatgac ctgacattac gtcaccaact tcagaacctg cacctagaat
    40501 aagattaatt gttcctttag ggaaaccaac ttcttccatt aattcaaaaa cacgtattgt
    40561 tgttaatggt gtaatttcac ttggtttcat aactagtgaa caacccgtag caagcgctgg
    40621 cgcaattttc catgatgctt gtaataacgg ataattccaa ggtgtaattt gtgtaactac
    40681 acctactggt tctttaacaa ttttgctttc tgtatctgga attggtgaat caatcatttc
    40741 gccaccgtct ttatctgcta atccagcaaa atacataaac acattatgaa tatcatccat
    40801 atctgcatat gattcttcta acgtttttcc agtatctaat gtttctaatc gtgctaacgc
    40861 ttcgcgatgt tctttaatct tgtccgcgat ggcacgtact tttttacctc ttgtttcagc
    40921 agtttcttgc gaccattcac cagactcaaa cgcacgtctt gcagctaaga ttgcacgttc
    40981 tgcatcctct tttgtccctt cagaaaccgt aaatatcact tcttgattgt aaggattgat
    41041 aatatctctt gtatttttat tcgcgctttc aacccactca ccatcaatat attgacgctg
    41101 agataaatgt tttaaaagtt ccattcaaca acctccgtta agtttgttaa atttttattt
    41161 aacgaatttt acaaacttat gttagcatag aaatgaaaaa tgtgtcaatt tacaaaacaa
    41221 ctcaagaatt aagttttgta agttcgttag atttttattt aacgaaacat ttaactttaa
    41281 tgctttaaat atttttaatg tcttttttta gaaaaggttt tataatgtat tagtatttat
    41341 tttaacgtga ccaaaatgat gtacggaggt gcaatgatga ctcgttctca gaacaaacag
    41401 caacaattag aacaagcaaa agatattgta attaattcaa ttggacagac aatggatttg
    41461 tatggcacta atagaagtgt aggaaactta tatggcacaa tggtgtttga aggcagtatg
    41521 acgcttgatg aaatgcgtca tcaattgcaa atgagcaaac caagtatgag tgctggcgtt
    41581 aagaaattgc aggaatttga tattgttaaa caacaattta cgagaggaag ccgcaaacaa
    41641 cattttatcg ccgagaaaga ctttttcatc tttttccgaa actttttcac taaaaaattc
    41701 cagcgtgaaa ttgacatcaa tgtcgaagca gtaaaagatg ctcaagctat tatcaattca
    41761 ttacttgaaa gcagtgattt aactgaagct gaaacacaag aggcacaaaa aattaaatct
    41821 cagcttgatc atacacatgt ttattacgaa tggttagaac agttaaccga agcgattgaa
    41881 agcggtgaaa ttttcaaata tttcccaatt ccagaacagc cttctgattc tgaaaattaa
    41941 aattgactca aacaacgaca atgatgatta tgcatgataa aaacaatgca ataggtccac
    42001 gaaataaacg gtaatttcta tctcaataaa tagaaattac cgtttttgtt ttatatgaca
    42061 atcaattatg gaggtatttt ctagggcttt cttagattcg ttacattgct tcgccaatat
    42121 atttcaatta gctattctcg ccctcacgta ctctatcaat aatattttgt atttgttcac
    42181 gtttttcata ttcattttct acaaaataaa ctaacggttc atctttgata gtaacccaag
    42241 gtacaagtac atcaaaatct aattctttaa ccatctctaa actttgaata gatttttctc
    42301 tatcacttga acctaatata actgtacgcc atctcttccc ttcaaaacat ataaaatctc
    42361 cagtaaataa gtaacggtga tgaccatcat cccataaaaa tagtgtcgtc cctggtgtat
    42421 gtccaggcgc gggaataact tctaaatcct tatccaacat tacacgatta ctaaattgtt
    42481 tttgaacaga aatcttatgt ttcagtgcag ccacatcatt ttcatgtata aagtaagggg
    42541 cttcaacttg attagaacct cctatagatt catgatcatg attcatcaat acttttgaaa
    42601 caccacctaa tgatgcaatg tcttgttggg agtcacctaa gtgtccggaa tgatagataa
    42661 caatattacc tgtttcacgt tttaaaataa aagatttaaa tagaaatcga ttatcaaaag
    42721 gcagttccga agtaggtgtc gcatataagt tttttgtgat ggattctaaa ctgtcatgta
    42781 atttggactg tttattttta aattgattag tcattttatt tcatccttcg attaatttga
    42841 attgtacata cgcagtaccc tttatttaat ttaataatca atgagagtct ttcaaacttc
    42901 gatttagaat atgcttcata caataaataa gtacttggag cactaaaaaa ttaaatcttt
    42961 tagtacaaca ttaatgaaaa cctaaaagtt catcctacaa tgctactaaa aaaaggggaa
    43021 tggaacagaa atgatatttt cacaaaattc atttcgtcgt cccagacccg ctttgaatta
    43081 taaattatcg tcttgttctt cttctgatac ttgaacgatt cgcaatgaac gacgttcaac
    43141 ttcttttaat ttttcagcac gcgtttcaag tttaattcta tcgcgcccta aaatgattaa
    43201 aaatgatatc atcatgaaaa taaaaataac aattaatggc acacttgcca gtattgaagc
    43261 agttttcaat acttctaatg cacgttcacc accaactagc atcaatgaaa atggcaataa
    43321 gcacaatgca aatgcccaga ataaacgatt ggcacgtaat ggttcgccta ccactttttt
    43381 ctgagatgct gccgctaaaa tatatgaacc cgaatcaaat gttgttgcta agaataagaa
    43441 agcagatact aagaatagta caatcatcaa tgatgggaat ggtaaatgat gcaccacttc
    43501 aataatggtt gcctctgtac catgtgtatt taaatattgt gttacattaa actgtccaga
    43561 aatttgtaaa tacacagcat agttaccaaa aataccaaag aataatacgc atccaagcgt
    43621 tccataaata attgttccta gcacgacttc tttaaggcgt cgaccttttg aaattctagc
    43681 gataaataaa ccgataaatg gcgcatatac taaccaccat gaccagtaga atattgtcca
    43741 gtcttgtggg aaattcgttt cttttcgacc tttaatacca ccgaatggtt ctaaccatgt
    43801 tgccatatga aagaaatctc tcaacatatt tccgaaccct gtcactgtcg tttccataat
    43861 aaaaacagtc ggtccaataa taaatataaa ggctaaaagt acaaaggata gccaaacgtt
    43921 gatatcactt aacttttgaa tacctttttt caatcctgta tatgaactaa tggcaaatat
    43981 aaccgtgatt gttaataaaa tggccgaacg taaaatcata tttttaccat ctaaaccagt
    44041 taatctttct atgcctgcag aaattaatgg cacacctaac gctagtgatg ttgccgcacc
    44101 acctagcaat ccaaagataa ataagatatc tacaacttta cctacaaatt tatctgtttg
    44161 accttttaaa atcggacgac aagcttgact aattttatac accggttgtt ttttaacaaa
    44221 tactaaataa ccaattggta atgctggtag aacataaata gcccaagcaa ttggccccca
    44281 gtggaacata ccatattgcg tcgcatattg gagtgcttca tcactcatac ttttcgcgcc
    44341 atttggtgga acttgatagt aaaaagccca ttcaataacg ccccagtata aaatatcaga
    44401 gcctatgcct gcacaaaaca gcattgccgc ccatgtaaat gtattaaatt ctggtttatc
    44461 acttgcttta ccaagtgtga cattaccata tttaccaaat gcgatataca ttacaaagca
    44521 aaaaatcgcc agccccataa ataaatatat cgaaccaatt gaatcagaaa tggcactatt
    44581 aataccagtg atgatatctt cacttgcttt tggaaaagcc atcataggta taactgcaaa
    44641 aagaagtaca gctactgtcc ctataaaggt cgtccagtcc ataactttct cttttttcaa
    44701 ttgtgctccc cctaattatt aattttatga atcctgtttc gatttatctc aaaatgtaat
    44761 aattatattg attcacaaaa ttgacaat
//
LOCUS       DAMQWL010000006        41534 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.006, whole genome shotgun sequence.
ACCESSION   DAMQWL010000006 DAMQWL010000000
VERSION     DAMQWL010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 41534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41534
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.006"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(443..541)
                     /locus_tag="PF788_000361"
     CDS             complement(443..541)
                     /locus_tag="PF788_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302652.1"
                     /translation="MNWIIELDLWLWCVGAINLINAVNDYANEILL"
     gene            complement(746..1342)
                     /gene="recR"
                     /locus_tag="PF788_000362"
     CDS             complement(746..1342)
                     /gene="recR"
                     /locus_tag="PF788_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009383386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDG6302653.1"
                     /translation="MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFA
                     KALVDVKRELTYCSVCGHITENDPCYICEDKQRDRSVICVVEDDKDVIAMEKMREYKG
                     LYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
                     KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM"
     gene            complement(1349..1666)
                     /locus_tag="PF788_000363"
     CDS             complement(1349..1666)
                     /locus_tag="PF788_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002479279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDG6302654.1"
                     /translation="MRGGGNMQQMMKQMQKMQKKMAQEQEKLKEERIVGTAGGGMVAV
                     TVTGHKEVVDVEIKEEAVDPDDIEMLQDLVLAATNEAMNKADELTQERLGKHTQGLNI
                     PGM"
     gene            complement(1756..3453)
                     /gene="dnaX"
                     /locus_tag="PF788_000364"
     CDS             complement(1756..3453)
                     /gene="dnaX"
                     /locus_tag="PF788_000364"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDG6302655.1"
                     /translation="MNYQALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFS
                     GPRGTGKTSIAKVFAKAINCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVD
                     EIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH
                     KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDAL
                     SIMDQAIAFGDGTLTLQDALNVTGSVHDEALDHLFDDIVQGDVQASFKKYHQFITEGK
                     EVNRLINDMIYFVRDTIMNKTSEKDTEYRALMNLELDMLYQMIDLINDTLVSIRFSVN
                     QNVHFEVLLVKLAEQIKGQPQVIANVAEPAQIASSPNTDVLLQRMEQLEQELKTLKAQ
                     GVSVAPVQKSSKKPARGIQKSKNAFSMQQIAKVLDKANKADIKLLKDHWQEVIDHAKN
                     NDKKSLVSLLQNSEPVAASEDHVLVKFEEEIHCEIVNKDDEKRSSIESVVCNIVNKNV
                     KVVGVPSDQWQRVRTEYLQNRKNEGDDMPKQQAQQTDIAQKAKDLFGEETVHVIDEE"
     gene            complement(3522..4046)
                     /locus_tag="PF788_000365"
     CDS             complement(3522..4046)
                     /locus_tag="PF788_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDG6302656.1"
                     /translation="MQIYLSTLTELDYDKSLNSIEESFDDNPETSWQARAKVKHLRKS
                     PCYNFELEVIAKNENNDVVGHVLLIEVEINSDDKTYYGLAIASLSVHPELRGQKLGRG
                     LVQAVEERAKAQEYSTVVVDHCFDYFEKLGYQNAAEHDIKLESGDAPLLVKYLWDNLT
                     DAPHGIVKFPEHFY"
     gene            complement(4184..4285)
                     /locus_tag="PF788_000366"
     CDS             complement(4184..4285)
                     /locus_tag="PF788_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302657.1"
                     /translation="MKTIQRIIRGTCLWEVAFLYVKFDSSELDVQFE"
     gene            complement(4354..4623)
                     /gene="ffs"
                     /locus_tag="PF788_000367"
     ncRNA           complement(4354..4623)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PF788_000367"
                     /product="signal recognition particle sRNA large type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01854"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01854"
     gene            complement(4685..5413)
                     /gene="treR"
                     /locus_tag="PF788_000368"
     CDS             complement(4685..5413)
                     /gene="treR"
                     /locus_tag="PF788_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HDG6302658.1"
                     /translation="MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRE
                     TVRKALDLLALDGMIQKIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVV
                     NEVVEAHEVPEVQHALNINSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVA
                     SDSIYDYLEKVLNLNISYSSKSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMP
                     FQYNISKHLANEFKFNDFSRRRIK"
     gene            complement(5438..7078)
                     /gene="treC"
                     /locus_tag="PF788_000369"
     CDS             complement(5438..7078)
                     /gene="treC"
                     /locus_tag="PF788_000369"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HDG6302659.1"
                     /translation="MSKEIDWRKSVVYQIYPKSFNDTTGNGIGDINGIIEKLDYIKLL
                     GVDYIWLTPVYESPMNDNGYDISNYLEINEDFGTMDDFEKLIKVAHQKDLKVMLDIVI
                     NHTSTEHEWFKEARKSKDNPYRDYYFFRSSEDGPPTNWYSKFGGNAWKYDSETDEYYL
                     HLFDVSQADLNWDNPEVRQSLYRIVNHWIDFGVDGFRFDVINLISKGEFKDSDKIGKE
                     FYTDGPRVHEFLHELNRQTFGNTDMMTIGEMSSTTIENCIKYTQPERQELNSVFNFHH
                     LKVDYVDGEKWTNAKLDFHKLKEILMQWQRGIYDGGGWNAIFWCNHDQPRVVSRFGDD
                     TSEEMRIQSAKMLAIALHMLQGTPYIYQGEEIGMTDPHFTSIAQYRDVESINAYHQLL
                     SEGHAEADVLAILGQKSRDNSRTPMQWSDDVNAGFTAGKPWIDISENYHQVNVRQALQ
                     NKESIFYTYQKLIQLRHTHDIITYGDIVPRFMDHDHLFVYERHYKNQQWLVIANFSAS
                     AVDLPEGLAREGCVVIQTGTVENNTISGFGAIVIETNA"
     gene            complement(7142..8569)
                     /gene="treP"
                     /locus_tag="PF788_000370"
     CDS             complement(7142..8569)
                     /gene="treP"
                     /locus_tag="PF788_000370"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
                     /protein_id="HDG6302660.1"
                     /translation="MAVKREDVKAIVTAIGGKENLEAATHCVTRLRLVLKDESKVDKD
                     ALSNNALVKGQFKADHQYQIVIGPGTVDEVYKQFIDETGAQEASKDEAKQAAAQKGNP
                     VQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGLFGPKALIEMYPQIADISNIIN
                     VIASTAFIFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAKGNIPTWNLF
                     GLEIKQLNYQGQVLPVLIAAYVLAKIEKGLNKVVHDSIKMLVVGPVALLVTGFLAFII
                     IGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITGLHHMFLAVDFQLMGSS
                     LGGTYLWPIVAISNICQGSAAFGAWFVYKRRKMVKEEGLALTSCISGMLGVTEPAMFG
                     VNLPLKYPFIAAISTSCVLGAIVGMNNVLGKVGVGGVPAFISIQKEFWPVYLIVTAIA
                     IVVPCILTIVMSHFSKQKAKEIVED"
     gene            complement(9040..9132)
                     /locus_tag="PF788_000371"
     tRNA            complement(9040..9132)
                     /locus_tag="PF788_000371"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9094..9096),aa:Ser,seq:tga)
     gene            complement(9401..10864)
                     /locus_tag="PF788_000372"
     CDS             complement(9401..10864)
                     /locus_tag="PF788_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HDG6302661.1"
                     /translation="MGEFKGFMKYDKQYLGELSLVDRLKHHKAYQQRFTKEDASIQGA
                     RCMDCGTPFCQTGQQYGRETIGCPIGNYIPEWNDLVYHQDFKTAYERLSETNNFPDFT
                     GRVCPAPCESACVMKINRESIAIKGIERTIIDEAFENGWVAPKVPSRRRDEKVAIVGS
                     GPAGLAAAEELNLLGYQVTIYERARESGGLLMCGIPNMKLDKDVVRRRIKLMEEAGIT
                     FINGVEVGVDIDKATLESEYDAIILCTGAQKGRDLPLEGRMGDGIHFAMDYLTEQTQL
                     LNGEIDDITITAKDKNVIIIGAGDTGADCVATALRENCKSIVQFNKYTKLPEAITFTE
                     NASWPLAMPVFKMDYAHQEYEAKFGKEPRAYGVQTMRYDVDDKGHIRGLYTQILEQGE
                     NGMVMKEGPERFWPADLVLLSIGFEGTEPTVPNAFNIKTDRNRIVADDTNYQTNNEKV
                     FAAGDARRGQSLVVWAIKEGRGVAKAVDQYLASKVCV"
     gene            complement(10882..15381)
                     /gene="gltB"
                     /locus_tag="PF788_000373"
     CDS             complement(10882..15381)
                     /gene="gltB"
                     /locus_tag="PF788_000373"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HDG6302662.1"
                     /translation="MHNEKLIKGLYDYREEHDACGIGFYANMDNKRSHDIIDKSLEML
                     RRLDHRGGVGADGITGDGAGIMTEIPFAFFKQHVTDFDIPGEGEYAVGLFFSKERILG
                     SEHEVVFKKYFEGEGLSILGYRNVPVNKDAIAKHVADTMPVIQQVFIDIRDIEDVEKR
                     LFLARKQLEFYSTQCDLELYFTSLSRKTIVYKGWLRSDQIKKLYTDLSDDLYQSKLGL
                     VHSRFSTNTFPSWKRAHPNRMLMHNGEINTIKGNVNWMRARQHKLIETLFGEDQHKVF
                     QIVDEDGSDSAIVDNALEFLSLAMEPEKAAMLLIPEPWLYNEANDANVRAFYEFYSYL
                     MEPWDGPTMISFCNGDKLGALTDRNGLRPGRYTITKDNFIVFSSEVGVVDVPESNVAF
                     KGQLNPGKLLLVDFKQNKVIENNDLKGAIAGELPYKAWIDNHKVDFDFENIQYQDSQW
                     KDETLFKLQRQFAYTKEEIHKYIQELVEGKKDPIGAMGYDAPIAVLNERPESLFNYFK
                     QLFAQVTNPPIDAYREKIVTSELSYLGGEGNLLAPDETVLDRIQLKRPVLNESHLAAI
                     DQEHFKLTYLSTVYEGDLEDALEALGREAVNAVKQGAQILVLDDSGLVDSNGFAMPML
                     LAISHVHQLLIKADLRMSTSLVAKSGETREVHHVACLLAYGANAIVPYLAQRTVEQLT
                     LTEGLQGTVVDNVKTYTDVLSEGVIKVMAKMGISTVQSYQGAQIFEAIGLSHDVIDRY
                     FTGTQSKLSGISIDQIDAENKARQQSDDNYLASGSTFQWRQQGQHHAFNPESIFLLQH
                     ACKENDYAQFKAYSEAVNKNRTDHIRHLLEFKACTPIDIDQVEPVSDIVKRFNTGAMS
                     YGSISAEAHETLAQAMNQLGGKSNSGEGGEDAKRYEVQVDGSNKVSAIKQVASGRFGV
                     TSDYLQHAKEIQIKVAQGAKPGEGGQLPGTKVYPWIAKTRGSTPGIGLISPPPHHDIY
                     SIEDLAQLIHDLKNANKDADIAVKLVSKTGVGTIASGVAKAFADKIVISGYDGGTGAS
                     PKTSIQHAGVPWEIGLAETHQTLKLNDLRSRVKLETDGKLLTGKDVAYACALGAEEFG
                     FATAPLVVLGCIMMRVCHKDTCPVGVATQNKDLRALYRGKAHHVVNFMHFIAQELREI
                     LASLGLKRVEDLVGRTDLLQRSSTLKANSKAASIDVEKLLCPFDGPNTKEIQQNHNLE
                     HGFDLTNLYEVTKPYIAEGRRYTGSFTVNNEQRDVGVITGSEISKQYGEAGLPENTIN
                     VYTNGHAGQSLAAYAPKGLMIHHTGDANDYVGKGLSGGTVIVKAPFEERQNEIIAGNV
                     SFYGATSGKAFINGSAGERFCIRNSGVDVVVEGIGDHGLEYMTGGHVINLGDVGKNFG
                     QGMSGGIAYVIPSDVEAFVENNQLDTLSFTKIKHQEEKAFIKQMLEEHVSHTNSTRAI
                     HVLKHFDRIEDVVVKVIPKDYQLMMQKIHLHKSLHDNEDEAMLAAFYDDSKTIDAKHK
                     PAVVY"
     gene            15562..16446
                     /locus_tag="PF788_000374"
     CDS             15562..16446
                     /locus_tag="PF788_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDG6302663.1"
                     /translation="MEIKQLRYFIEVAKREHISETALELNIAQSAISRQITLLEQELN
                     VSLFKKQGRNITLTSEGKLLFNEALRIIEHLDSTIEQFQSHGLTKNKSIYIGYDESDV
                     SHMLLPLIQTFHLQNDTHVIPSLLEHDTIINSVLNGNIDIGFTELTPEIRKHKQLHML
                     PLFEEHYHLYAPSDDPITMATHPPLIQFEHSHIYCLAPFAETVKKQLRKITKSDVYTI
                     SSQPLAQYLLRQKEGYIISSQNIHLPESKSWIDIKLDHTELKRTICAITKEPYTKSDI
                     GILLTLIQQLMTKTSTFH"
     gene            16561..17679
                     /locus_tag="PF788_000375"
     CDS             16561..17679
                     /locus_tag="PF788_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibE/F family protein"
                     /protein_id="HDG6302664.1"
                     /translation="MFLKYRNLFTKPFNIILGLFCIAFIGAILFTFNNENFYNKPIGQ
                     IIDVKHVSSTPTKDAQNNRDIKYKNQLKVKILNGQFAGETTTINHQYVKSQADSEAFR
                     THEKVLLHISNKPSDAYIIEKKRDTLTVIITGLFLLTVLLVGRKVGLQSILSLILNSI
                     AILIAIYIHIQHSNINLFLLMTIAMICSTILTLLLVTGWHMRTLITIASTIIGTFLSI
                     GLTELIIYMADGKGIKYETMNFLSLPPKDIFLASVLIGSLGAIMDVAITIASGMHEIL
                     QRTPHISMRRWALAGRNIGQDIMGTMTNILLFSYLSGALPMFLIFLKNANTVTYTISM
                     NWSLEIARALTGGIGIVLTIPITILFMEIFETLRRAKQ"
     gene            17676..18458
                     /locus_tag="PF788_000376"
     CDS             17676..18458
                     /locus_tag="PF788_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibE/F family protein"
                     /protein_id="HDG6302665.1"
                     /translation="MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLI
                     IFGVPIYVVTFFFCIIIGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGH
                     LQGFSTEQQDETYVYSMNIGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNP
                     TLTQYELFQSGMRVGREILATSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFA
                     QEFISIILGGIAVAISIPITAWITAFLIKRPSRQRKNDESIN"
     gene            complement(18627..19112)
                     /locus_tag="PF788_000377"
     CDS             complement(18627..19112)
                     /locus_tag="PF788_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6302666.1"
                     /translation="MTNNDTIMLRHYVPQDYSMLEAFQLSESDLKFVKTPEENITAAM
                     SDNERYPIVVMDGRQCVAFFTLHRGKGVAPFSDNQDAVFFRSFSVDQRYRNRGIGKVV
                     MEKLASFITSTFQDINEIVLTVNTDNPHAMALYRQQGYQYMGDSMFVGRPVHIMALTI
                     K"
     gene            complement(19102..19497)
                     /locus_tag="PF788_000378"
     CDS             complement(19102..19497)
                     /locus_tag="PF788_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDG6302667.1"
                     /translation="MIKCVCLVEETADKILLVQVRNREKYYFPGGKIEEGESQVHALL
                     REVKEELNLTLTMDEIEYVGTIVGPAYPQQDMLTELNGFRALTKIDWENVTINNEITD
                     IRWIDKDNDALIAPAVKVWIETYGGKHDK"
     gene            19646..19915
                     /locus_tag="PF788_000379"
     CDS             19646..19915
                     /locus_tag="PF788_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302668.1"
                     /translation="MAKRSKSQRLSSLLNVAGFIVDGYNGYKYHAKNKKLVYLSLGLS
                     TVGTVLDFYISIKSPRKFKKAVAVVTLITNGARLFTSIRKVKHEY"
     gene            complement(20100..21104)
                     /gene="aaa"
                     /locus_tag="PF788_000380"
     CDS             complement(20100..21104)
                     /gene="aaa"
                     /locus_tag="PF788_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autolysin/adhesin Aaa"
                     /protein_id="HDG6302669.1"
                     /translation="MQKKVIAAIIGTSAISAVAATQANAATTHTVKPGESVWAISNKY
                     GISIAKLKSLNNLTSNLIFPNQVLKVSGSSNSTSNSSRPSTNSGGGSYYTVQAGDSLS
                     LIASKYGTTYQNIMRLNGLNNFFIYPGQKLKVSGTASSSNAASNSSRPSTNSGGGSYY
                     TVQAGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKLKVTGNASTNSGSATTTNRG
                     YNTPVFSHQNLYTWGQCTYHVFNRRAEIGKGISTYWWNANNWDNAAAADGYTIDNRPT
                     VGSIAQTDVGYYGHVMFVERVNNDGSILVSEMNYSAAPGILTYRTVPAYQVNNYRYIH
                     "
     gene            complement(21436..22278)
                     /gene="gmpC"
                     /locus_tag="PF788_000381"
     CDS             complement(21436..22278)
                     /gene="gmpC"
                     /locus_tag="PF788_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter
                     glycylmethionine-binding lipoprotein"
                     /protein_id="HDG6302670.1"
                     /translation="MKRLIGLVIVALVLLAACGGNNDKKVTIGVASNDTKAWEKVKEL
                     AKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTV
                     LAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVK
                     DITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAV
                     KPYINIVAVNDKDLDNKTYAKIVELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIET
                     SLAK"
     gene            complement(22315..22974)
                     /locus_tag="PF788_000382"
     CDS             complement(22315..22974)
                     /locus_tag="PF788_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6302671.1"
                     /translation="MFGSDLDSAQLLQALYETLYMVSIALFLGAVIGIPLGVLLVITR
                     KQGIWPNIVIHQVLNPLINILRSLPFIILLIAIVPFTKLVVGTSIGTTAAIVPLTVYV
                     APYIARLVENSLLEVDEGIIEAAKAMGASPLQIIRYFLIPEALGSLVLAITTAIIGLI
                     GSTAMAGAVGGGGIGDLALVYGYQRFDTTVIIITVIVLVIIVQVIQTLGNVLARFIRR
                     H"
     gene            complement(22978..24003)
                     /locus_tag="PF788_000383"
     CDS             complement(22978..24003)
                     /locus_tag="PF788_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HDG6302672.1"
                     /translation="MIEFRQVSKTFNKKKQKIDALKDVSFTVNRNDIFGVIGYSGAGK
                     STLVRLVNHLEAASNGQVIVDGHDITNYSDKMMRDIKKDIGMIFQHFNLLNSATVFKN
                     VAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK
                     ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGK
                     VVETGTVKEVFSHPKTTIAQNFVSTVIQTEPSTSLIRRLNDEQVGDFKDYKIFVEETQ
                     VTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNMDQQFEDTAINQYFKEKN
                     IQFEEVH"
     gene            complement(24297..25439)
                     /locus_tag="PF788_000384"
     CDS             complement(24297..25439)
                     /locus_tag="PF788_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDG6302673.1"
                     /translation="MNKKTKLIHGGHTTDDYTGAVTTPIYQTSTYLQDDIGDLRQGYE
                     YSRTANPTRSSVESVIATLENGKHGLAFSSGVAAISAVVMLLDKGDHIILNSDVYGGT
                     YRALTKVFTRFGIEVDFVDTTHTDSIVQAIRPTTKMLFIETPSNPLLRVTDIKKSAEI
                     AKEHGLISVVDNTFMTPYYQNPLDLGIDIVLHSATKYLGGHSDVVAGLVATSDDKLAE
                     RLAFISNSTGGILGPQDSYLLVRGIKTLGLRMEQINRSVIEIIKMLQAHPAVQQVFHP
                     SIESHLNHDVHMAQADGHTGVIAFEVKNTESAKQLIKATSYYTLAESLGAVESLISVP
                     ALMTHASIPADIRAKEGITDGLVRISVGIEDTEDLVDDLKQALDTL"
     gene            complement(25423..26337)
                     /locus_tag="PF788_000385"
     CDS             complement(25423..26337)
                     /locus_tag="PF788_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HDG6302674.1"
                     /translation="MITYDLIGNTPLVLLEHYSDDKVKIYAKLEQWNPGGSVKDRLGK
                     YLVEKAIQEGRVRAGQTIVEATAGNTGIGLAIAANRHHLKCKIFAPYGFSEEKINIMI
                     ALGAEVSRTSQSEGMHGAQLAARSYAEKYGAVYMNQFESEHNPDTYFHTLGPELTSAL
                     QQIDYFVAGIGSGGTFTGTARYLKQHHVQCYAVEPEGSVLNGGPAHAHDTEGIGSEKW
                     PIFLERRLVDGIFTIKDQDAFRNVKSLAINEGLLVGSSSGAALQGALNLKAQLSEGTI
                     VVVFPDGSDRYMSKQIFNYEENNNEQEN"
     gene            complement(26554..27891)
                     /locus_tag="PF788_000386"
     CDS             complement(26554..27891)
                     /locus_tag="PF788_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDG6302675.1"
                     /translation="MKRQQSQWKSSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFL
                     AMFLIFTIFVGLPLLIMEFTVGKMGRTYTTQIYSKLTGKKWLNIIGWNGNLAVFILFG
                     FYSVIGGWIVIYIGQVLWQLVIFQRINHLQEMNFEAVISNPWLTVLGQGIFIFATMII
                     VMLGVEKGLEKASKVMMPLLFVFLIVIVIKSLTLDGALEGVKFILQPRVSEITADGIL
                     FALGQSFFTLSLGTTGMITYASYASKDMTIKSSAISIVVMNIFVSVLAGLAIFPALHS
                     FGYEPQEGPGLLFKVLPMVFSQMHLGTLFYLGFLVLFLFAALTSSISLLELNVSNFTK
                     NDNTKRKKVAVIGSILVFIISIPATLSFGILKDVRFGAGTIFDNMDFIVSNVLMPLGA
                     LGTTLVVGQLLDKKLLQQYFGKDRFRLFSGWYYLIKYAMPVVIILVFIVQLFS"
     gene            complement(28056..28169)
                     /locus_tag="PF788_000387"
     CDS             complement(28056..28169)
                     /locus_tag="PF788_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302676.1"
                     /translation="MGIAPEVVMWRDVGDIDGVVCGEILAHVYSVEPENLM"
     gene            complement(28347..29081)
                     /locus_tag="PF788_000388"
     CDS             complement(28347..29081)
                     /locus_tag="PF788_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase"
                     /protein_id="HDG6302677.1"
                     /translation="MRIKTPSPSYLKGTNGHAILLLHSFTGTNRDVKHLAAELNDQGF
                     SCYAPNYPGHGLLLKDFMTYNVDDWWEEVEKAYQFLVNEGYESISATGVSLGGLMTLK
                     LAQHYPLKRIAVMSAPKEKSDDGLIEHLVYYSQRMSNILNLDQQASSAQLAAIDDYEG
                     EITKFQHFIDDIMTNLNVIKMPANILFGGKDAPSYETSAHFIYEHLGSVDKELNGLKD
                     SHHLMTHGEGRDILEENVIRFFNALT"
     gene            complement(29118..29792)
                     /locus_tag="PF788_000389"
     CDS             complement(29118..29792)
                     /locus_tag="PF788_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDG6302678.1"
                     /translation="MIDKKLTSPKMTVPLFLIALIVFIGMFYSVVTNQEWLKNIDMGS
                     LTWFTDYFGEPQRQYVNNLFNYYMTFSAEIGDVKGVVLISIIVTIILFIKQRHLAVWF
                     VTYLVSGVIMNKLIKDTVLRPRPYNHLAVDTGFSFPSGHSNASTLLYFALMIIIISLA
                     AKTITKVLSALVMGILWLSILFCRLYFHAHYFSDVIGGTSLAIIWVALFLMVYPYFIN
                     HRRQRV"
     gene            29830..30246
                     /locus_tag="PF788_000390"
     CDS             29830..30246
                     /locus_tag="PF788_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302679.1"
                     /translation="MLSIISMCHKFHFTDNIKIIKFILLCILQIKHCIIEITIFCYFQ
                     FSTIYIYYTEGVRRINRVIFVYIALIITLVRFFTPIHPSFSNLIYWIFVLYFIPIILC
                     VIGFKAEKLIATMVIIPNFLGILYRLYAYVTHILFM"
     gene            complement(30475..30837)
                     /locus_tag="PF788_000391"
     CDS             complement(30475..30837)
                     /locus_tag="PF788_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2294 domain-containing protein"
                     /protein_id="HDG6302680.1"
                     /translation="MKRTKGEIEAEISKAITQWEKDFLGRGSLSVKSDILRDMVIISL
                     QGILTPAEYRVCSTNEGLLNIKRTRSELVESGEQDLNDIIFKITGIKVMSFHSDLSTV
                     TGERIIVFKLEDNLEKHI"
     gene            complement(30999..33704)
                     /locus_tag="PF788_000392"
     CDS             complement(30999..33704)
                     /locus_tag="PF788_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbcC family protein"
                     /protein_id="HDG6302681.1"
                     /translation="MTTQLNINSVIENAKRVITPLSPISIFAARNPWEGLEADTFEDV
                     AKWLRDVRDVDIFPNKALIESAVARGELDESVFNQLVTDMLLEHHYNIPQHYINLYID
                     NIKTLKDVPASYMNHSNVDVVADLLLEKSKRDMAESYHHYDVRPMSDAIIDEQGEPLS
                     EQVNRQMIKWTKLYIDQFLSSWTMPKREQSFYHAWLHLAQHDHSFTKAQRQVIKGLPN
                     DPEMTIESVLTHFSIDQEDYQAYVEGHLLALPGWAGMLYYRSQQHYFEQHLLTDYLAI
                     RLVVEQLLVGDEFKSVAKDCESRSENWFKQTVASWCYYSDMPSDVLLQHDVNEIQTFI
                     HFAATMNKNVFKNLWLIAWEMTYESQLKQKIKAGHESVAGALDVNQVNVSENDNANQP
                     HSVLLNDTQAVDENNSELNQMGTSTKAQIAFCIDVRSEPFRRHIEAAGPFETIGIAGF
                     FGLPIQKDAVDEQFKHDSLPVMVPPAYRIKEFADRYDMNVYRQQQQTMSSMFYTFKLM
                     KNNVMPSLLLPELSGPFLSLSTIVNSIMPRKSRASLQKIKQKWLKKPETKLTIDREFD
                     RTSDLPVGFTEQEQIDFALQALKLMDLTEAFAPFVVLAGHASHSHNNPHHASLECGAC
                     GGASSGFNAKLLAMICNRPNVRQGLKQSGVYIPETTVFAVAEHHTSTDTLAWVYVPDT
                     LSSIALDAYESLNDAMPMISEHANRERLDKLPTIGRVNHPVEEAQRFASDWSEVRPEW
                     GLAKNASFIIGRRQLTKGIDLEGRTFLHNYDWRKDKDGTLLNTIISGPALVAQWINLQ
                     YYASTVAPHFYGSGNKATQTVTSGVGVMQGNASDLMYGLSWQSVMAADRTMYHSPIRL
                     LVVIQAPDYVVARLLANNEHFARKVSNHWLRLMSVNEEGRFKSWI"
     gene            complement(33717..35201)
                     /locus_tag="PF788_000393"
     CDS             complement(33717..35201)
                     /locus_tag="PF788_000393"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase subunit 5"
                     /protein_id="HDG6302682.1"
                     /translation="MLSFQLLFSLFVIALIIALISGLLFLAPVMPMRYIKLHLYILVM
                     PVLFAVIGFFGIHGQHVLGPFKIDRLSWLLAGFVMALGFIIQKFSMRYLLGDHHYRHY
                     FPLFTAITSFASLAWMSEDLRLMALCWGITLLCLTLLMNVNRFWKVPRESAKLSSMTF
                     LCGWLAFVGAIVTIYIATGEWRVPQHIVHPTWSLLTNVLLVLAVMIPAAQFPFHRWLI
                     ESVTAPTPVSAIMHAGIVNAGGVILTRFAPIFDNGFALSLLLILSSISVLLGSGISLV
                     QVDYKRQLVGSTMSQMGFMLVQCALGVYSAAIIHLILHGIFKATLFLQSGSIVKRFNI
                     PKQASAKDAYGWIVMGRVLAIIVAFLFWMSSDRSAYEVLSALILGWSLLVSWNQMVAF
                     SKGRMARLVGMILIAIVTFIYVITHNYFYAVLQNITTHATTPPTVSVIISVVILIFGS
                     LLSIWVARHRYSKAFAVLYVWLVNLGEARSKAIESHPNYLKKYL"
     gene            35722..35787
                     /locus_tag="PF788_000394"
     CDS             35722..35787
                     /locus_tag="PF788_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014373781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenol-soluble modulin PSM-alpha-1"
                     /protein_id="HDG6302683.1"
                     /translation="MGIIAGIIKVIKSLIEQFTGK"
     gene            35819..35884
                     /locus_tag="PF788_000395"
     CDS             35819..35884
                     /locus_tag="PF788_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014373780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenol-soluble modulin PSM-alpha-2"
                     /protein_id="HDG6302684.1"
                     /translation="MGIIAGIIKFIKGLIEKFTGK"
     gene            35936..36004
                     /locus_tag="PF788_000396"
     CDS             35936..36004
                     /locus_tag="PF788_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014373779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenol-soluble modulin PSM-alpha-3"
                     /protein_id="HDG6302685.1"
                     /translation="MEFVAKLFKFFKDLLGKFLGNN"
     gene            36068..36130
                     /locus_tag="PF788_000397"
     CDS             36068..36130
                     /locus_tag="PF788_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014532416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenol-soluble modulin PSM-alpha-4"
                     /protein_id="HDG6302686.1"
                     /translation="MAIVGTIIKIIKAIIDIFAK"
     gene            complement(36789..37991)
                     /locus_tag="PF788_000398"
     CDS             complement(36789..37991)
                     /locus_tag="PF788_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HDG6302687.1"
                     /translation="MAKIPVTVLSGYLGSGKTTLLNHILQNREGRRIAVIVNDMSEVN
                     IDKDLVADGGGLSRTDEKLVELSNGCICCTLRDDLLKEVERLVKKGGIDQIVIESTGI
                     SEPVPVAQTFSYIDDELGIDLTAICRLDTMVTVVDANRFVHDINSEDLLMDRDQSVDE
                     TDERSIADLLIDQVEFCDVLIINKIDLISEEELAKLEKMLSALQPTAKIIKTTNSEVD
                     LKEVLNTQRFDFEKASESAGWIKELESGGHASHTPETEEYGISSFVYKRRLPFHAKRF
                     NDWLESMPNNVVRSKGIVWLAQYNHVACLLSQAGSSCNIHPVTYWVASMSEAQQTQIL
                     AERQDVAAEWDPEYGDRHTQFVIIGTELDEEKLTKELDACLVNAQEIDADWQQFEDPY
                     QWQIRPAR"
     gene            38110..38370
                     /locus_tag="PF788_000399"
     CDS             38110..38370
                     /locus_tag="PF788_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302688.1"
                     /translation="MSALLYNGDKDISHERESRCINMLFVILVLYVTGIAFILLSVFG
                     SKTEGLSTKHTLYTIGSAIITIAIFISIGYAIQYLTAALYGL"
     gene            complement(38660..38974)
                     /locus_tag="PF788_000400"
     CDS             complement(38660..38974)
                     /locus_tag="PF788_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302689.1"
                     /translation="MTLIEPDMTLRMPDISTTVETLNLISKMEAQKENIRTVIAPEHK
                     HKYKDIENGLKGEEKVLIEQMAQHCEAFKANFKGAAQGDWVKSAMSEIDSIKDDLKKI
                     NS"
     gene            complement(38993..39316)
                     /locus_tag="PF788_000401"
     CDS             complement(38993..39316)
                     /locus_tag="PF788_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302690.1"
                     /translation="MMFNQINNKNELEESYESEKKRIENELQNLNELRHRTRKENERS
                     YDVFQYLKHEMNYSEDAQRKMTRNIEAYEQEINEIIRKQEWKLEEYKEDLKKSYEKQL
                     DKLSD"
     gene            complement(39313..40641)
                     /locus_tag="PF788_000402"
     CDS             complement(39313..40641)
                     /locus_tag="PF788_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302691.1"
                     /translation="MLSRKYKIDLKAINQNTESTSAISKASYEVENANNNGLSKRDVI
                     NQFNDLKKMKKFPSNLEYVDSYTDSLTGVTTSAFLNKDTGKVTLGMTGTNLQDEAFKK
                     LKEGEFSRQNVTNALETVKDGYADLKILYSPASDQNYRYANTQEFINKIKSKYDIDFI
                     TGHSLGGRDAVVLGMSNGIPNIVVYNPAPISITSLNPNSPDGKRLLELYKNYKGNITR
                     FVAENDALTENLKKYKHYVFFGNDKVFKNGKGHEMEGFLTEEEQKAIKKELKKLQGYA
                     EENNKSFVKNSNNAISKLASIELLRANMMTTNGGGLSSSQQKVLESLTALTIAQSFSQ
                     LIDDEINQIKKMYNEKKKKFGKNWEDAQKAGKAVGEDLSVNGVLNALDEGQVNESSMV
                     REPEQMISAKERQLSTIGSSVSNYIMRVRLSINEIVDKDQVLASQIGGLL"
     gene            complement(40631..41443)
                     /gene="lpl10"
                     /locus_tag="PF788_000403"
     CDS             complement(40631..41443)
                     /gene="lpl10"
                     /locus_tag="PF788_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001801842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl10"
                     /protein_id="HDG6302692.1"
                     /translation="MEYIKKIALYMSVLLLIIFIGGCGNMKDEQKKEEQTNKTDSKEE
                     QIKKSFAKTLDMYPIKNLEDLYDKEGYRDGEFKKGDKGTWTILTGFSKSNKPGVLDDE
                     GMVLYLNRNAKKATGYYFVNKVYDDISKNHNEKKYRVELKNNKIVLLDNVEDKKLKQK
                     IENFKFFSQYADFKDLKNYQDGNITTNENVPSYEAQYKMNNSDKNVKKLREIYPITTN
                     NSPNLKLYIDGDIKGSSVGYKKIEYKFSKDKGQETTLRDYLNFGPSEGENVE"
BASE COUNT        12997 a         8515 c         5970 g        14052 t
ORIGIN      
        1 tttcttaccg acaagaatta attatacatt ttattaacat ttaagtcaat aactttttaa
       61 aattaatttt cgttagtaat tcaagttatt tcttaagttg agttgttttg tttgcctcaa
      121 caaataaata ctatacaggc tttcaaactg cttaacaaca gtaaaaatta cacctttgtc
      181 atctgtactg aacgccctta tcctaaaaat cgaacttaaa aaatccccac ttataaatag
      241 tacgtttttt agaacaagaa acagattttt ctctaaccat atcaatcaaa aaaaacgcaa
      301 aacagaacgt tattttttta ccagaaatta aaaataaatt tacaagtttt aaataatctc
      361 tcaaaacacc gctatacagg ctgatttaat aagctttaga ccaaagaagt acaacttact
      421 aagccagcat ctatcatttc aattacaaaa gaatttcatt tgcatagtca ttaaccgcat
      481 ttatcaaatt aatagcacca acacaccata accatagatc taattcgata atccaattca
      541 catcattact attagaagta acaaatcaca accaacggct tgcttcctaa agattaccca
      601 tccctcagta aaactaggta aaccatacca ccgccacacc gcaaataaag tagtacatca
      661 caccacacca taaaaaaagc cacaatgatt acactgtgac ttttcttact atagtattaa
      721 aatcaaaaat gtttaataga agacattaca tttctgttct acctgcgatt gctttagata
      781 atgttacttc gtcagcatac tctaaatcgc cacctaccga taacccttgt gctaatctcg
      841 tcactttgat acctataggc ttaactaatc tagaaatata catggctgta gattccccct
      901 ctaagttcgg gttcatagct aagattaatt cgctaacttc atcgtttttc aagcgttcaa
      961 tcaatgaagg aatattaata tcttctggtc caatgccatc cataggcgaa atagacccat
     1021 gtaaaacgtg atataaacct ttgtattctc tcattttttc catagctatg acatctttgt
     1081 catcttccac aacacaaata actgaacgat ctctttgctt atcttcacaa atataacatg
     1141 gatcattttc agtaatgtga ccacatacgc tacaatatgt taattctctc ttaacatcta
     1201 ctaatgcttt ggcaaactga acaacatcgt cttctttcat atctaaggta tgaaaagcca
     1261 gacgttgggc tgtctttgga ccaatgcctg gcaatttcat aaagctatca ataagttttg
     1321 atataggttc tggataatgc atctatgatc acattccagg gatgtttaag ccttgagtat
     1381 gtttacctaa acgttcttga gtaagctcat cagctttatt catcgcttca ttagtagctg
     1441 ctaacactaa gtcttgtagc atttcaatat cgtctgggtc tacagcttct tctttgattt
     1501 caacgtcgac aacttcttta tgaccagtta cagtaactgc aaccatgcca ccgccagctg
     1561 ttcctacaat acgctcttct ttaagttttt cttgttcttg agccattttc ttttgcattt
     1621 tttgcatttg tttcatcatt tgttgcatgt ttccgccacc gcgcatattc catttcctcc
     1681 ttgaaaatca ataaatattt atcaataaaa tgatgtttct ttcattatac atacgattat
     1741 atcgcttgtc atgtatcact cttcatctat cacatgtaca gtttcttcac cgaaaagatc
     1801 ttttgctttt tgagcaatat ctgtttgttg tgcttgttgc tttggcatat catcgccttc
     1861 gtttttacga ttttgtaaat attccgttcg aactctttgc cattgatctg atggtacacc
     1921 aacaacttta acgtttttat taacgatatt acatacaaca ctttctatac tactacgttt
     1981 ctcgtcgtct ttattgacga tttcacaatg gatctcttcc tcaaatttca caagtacgtg
     2041 atcttcactt gccgccacag gttccgaatt ttgcaataaa ctaacgagtg attttttatc
     2101 attatttttg gcatgatcaa tcacttcttg ccaatgatct ttcaacaatt tgatatctgc
     2161 cttattcgct ttatctagca cttttgcaat ttgttgcatt gaaaatgcat ttttagattt
     2221 ttgtatgcct ctcgcaggct ttttcgaaga tttttgaaca ggagcgacac tcactccttg
     2281 tgcttttagt gtttttagtt cttgctctaa ctgttccata cgttgcaaca atacatctgt
     2341 gtttggcgat gaagcaattt gtgctggttc agctacattc gcaatcactt gtggttgacc
     2401 cttaatctgc tcagctaatt ttactaacaa cacttcaaaa tgaacgtttt gattcacact
     2461 aaaacgaatc gacactaatg tatcattaat aagatcaatc atttgatata acatatctaa
     2521 ttctaagttc atcagtgctc gatactcagt atctttctca gatgttttat tcataatcgt
     2581 atctctgaca aaataaatca tatcatttat taggcgattc acttctttac cttctgttat
     2641 aaactgatgg tattttttaa aagatgcttg tacgtcacct tgtacaatat catcaaacaa
     2701 gtgatccaac gcttcatcat gtacgctacc tgtgacattc aacgcatctt gcaatgttaa
     2761 cgtaccatca ccaaatgcaa tagcctgatc cataatactt aatgcatcac gcataccccc
     2821 ttcagacgct ttagcgataa atgccaaggc ttcatcttca cattcaattt gttgtgcatc
     2881 tgctacaaat tttaaacgtt caacaatttg atctaggcta attgctttaa aatcaaaacg
     2941 ttgtgcccta gaaatgattg ttggagggat tttatgtggt tctgtcgttg ccaatataaa
     3001 aatagcgtgt gctggaggtt cttctaacgt ctttaaaagg gcattaaaag cacctgttgt
     3061 tagcatgtgc acctcatcta taatataaac tttatatttc gattcacttg gtgcatattt
     3121 aactttgtct ctaatatttc ttatttcatc aaccccatta ttactagcag catcaatttc
     3181 tatcacatct gaattagtcc cctgcgtaat gcctttacaa atatgacatt cattacaagg
     3241 ttctccatca gtgctattta gacagttgat tgctttagca aacactttgg caatactcgt
     3301 tttccccgta cctctcggac cactaaaaat ataagcatgc gactgttttt ctttcgaaat
     3361 cgcattgcgc aatgtcttcg tgacatgttc ttgtccgacg acatcctcga aactttgggg
     3421 tctgtacata cgatataagg cttgataatt caagttagca cctccataaa caattacctc
     3481 tcattatagc atgataatac ctttacttct taattgaaca attaataaaa atgttctgga
     3541 aattttacga ttccgtgtgg tgcatccgtc aaattatccc ataaatattt tacaagtaac
     3601 ggtgcatcac cagattctaa tttaatgtca tgctcagcag cattttgata acccaacttt
     3661 tcaaagtagt caaaacaatg gtctacaaca accgtactat actcttgtgc tttggcacgc
     3721 tcttctactg cttgaaccaa gccacgacct aatttttgtc cacgtaattc aggatgaact
     3781 gataaagagg caatcgccaa accataatac gtcttatcat cactattaat ttctacttca
     3841 attaataaaa cgtgtccaac gacatcgtta ttttcatttt tcgctattac ttctaattca
     3901 aaattatagc aaggagattt tcttaaatgt tttactttcg cacgtgcttg ccaactcgtt
     3961 tcaggattat catcaaaact ttcttcaata ctatttaaag atttatcata atctaactct
     4021 gttaaagtac ttaaatatat ttgcatatgt cctccgtagg catttgattg tcaataatca
     4081 taacgtatct cattaataat tctattgtaa gatactcccc ctcatttcac catcatttct
     4141 ttatcatcaa attataactt cttacttttc attgacacaa aaatcattca aactgcacat
     4201 cgagttcact tgaatcaaac ttcacatata aaaaagctac ttcccacaaa catgttccac
     4261 gtataatacg ctgaattgtc ttcaagaaag tagcttctat aattatatat tttcaactct
     4321 taataatcgg tttaatattt aaaaaataaa aaaccgtgca cctaagcatc gaacgtaatt
     4381 cacgaacgta accaaagtcg ttagctaaat ctcggctacc ctacggcaca tatgatgatc
     4441 cacttaatgc tgcttccgtc aggacctgac atggttcatg ggttcatatt gcataggacc
     4501 gaaatcttca aacactacgt gctttgggca gacttcgcaa aaatacggcc tcaacaaagg
     4561 aattaagcct cgcataaagc ggatttcgag tacagggaac cgctacctcc ccacctagca
     4621 cggcaagata tatattacta tattttaata gttaattgca agtataaatc atttatatca
     4681 ttgtttactt tatacgacgt cttgagaagt cattaaattt aaattcattt gcaagatgtt
     4741 ttgaaatatt atattgaaac ggcattgtat tttctaaata cacaatactt cgaactgttg
     4801 ctgaataagc caccgataca tcaccaaaca attgatatgc ttgttcatca aacggttcaa
     4861 aagtaataga cttacttgaa taactaatat taagatttaa taccttttcc aaataatcat
     4921 aaatagaatc actcgcaaca tcattaccta tatctgaaac aatcgacttt agaaaataat
     4981 cttcatcaac aatcttcaca tgttggttaa gccgacgagt tctaacaata tgaatgagtg
     5041 attcactaga attgatgttt aaagcatgtt gaacttctgg aacttcatgc gcttcaacaa
     5101 cctcattcac aacaacttca gttaaatatg cgacgcccat ttcttcttgc atttctttaa
     5161 aactaacaag ttcagaaaat ggaaactctg taacctcctg ataaatgaca agtgaccctt
     5221 taccatgaat cttttgaatc atgccgtcta atgccaacaa atctaatgcc ttacgcacgg
     5281 tctctcgaga tgactggtac aattgcacca aatcatgttc agacggaatt tgttcaccat
     5341 attgaatctg cccgtttaat atatcttctt tcaacgcctc ataaatcttc ataaactttt
     5401 tttgtttcgc catataaacg catccactca atttatttta cgcgtttgtt tcgattacaa
     5461 ttgcaccaaa cccgcttatc gtattatttt ccactgtgcc tgtttgaatc acaacacaac
     5521 cttctctagc caatccttct ggcaaatcaa cagccgatgc tgagaaattc gcaattacta
     5581 gccattgttg attcttataa tgacgttcat aaacaaataa atgatcatga tccataaaac
     5641 gtggcacaat gtctccatac gtaataatat catgcgtatg tcttaattgt attaattttt
     5701 gatacgtata gaaaatagac tctttattct gaagtgcttg tctaacgttg acctgatgat
     5761 aattttccga aatatcaatc caaggcttac cagctgtaaa tccagcatta acatcatcac
     5821 tccattgcat aggcgttctc gaattgtctc gtgacttctg tcctaaaatc gctaacacat
     5881 ccgcttcagc atgcccttca cttaacaact gatggtaggc attaatcgat tcaacatcac
     5941 gatattgtgc tattgatgta aaatgtgggt ccgtcatacc aatttcttca ccttggtaaa
     6001 tatatggcgt cccttgcaac atatgcagtg cgatagctaa cattttagca ctttgtatcc
     6061 tcatctcttc cgacgtatca tcaccaaatc tagacactac ccgtggctga tcatgattac
     6121 accagaaaat cgcgttccat ccgccaccgt cataaatacc tcgttgccat tgcatcagaa
     6181 tttcctttaa cttatgaaaa tcaagcttcg catttgtcca cttttcacca tcaacataat
     6241 caacctttag atgatgaaaa ttaaaaacac tattcaattc ttggcgttct ggttgtgtat
     6301 acttaataca attttcaatc gtcgtcgaag acatttctcc tatagtcatc atgtcagtgt
     6361 taccaaacgt ttgacgattt aattcatgca gaaactcatg cactctagga ccatccgtat
     6421 aaaattcttt acctattttg tcagagtcct taaattcacc tttagaaatt aagttaatga
     6481 catcaaatcg aaaaccatca acgccgaagt ctatccaatg attgactatg cgatataacg
     6541 attgacgtac ttccggatta tcccaattta aatcagcttg actgacatca aataaatgta
     6601 aataatattc atctgtctca gaatcatact tccatgcatt accaccgaat ttagaatacc
     6661 aatttgttgg cggcccgtct tcagatgatc tgaaaaagta ataatctcta taagggttat
     6721 ctttagattt acgggcttct ttaaaccatt catgctccgt cgacgtatga ttaatgacaa
     6781 tatctaacat cactttcaag tctttttgat gcgcaacttt gattaacttt tcaaaatcat
     6841 ccatcgttcc aaagtcttca ttgatttcta aataattgct gatatcatag ccattatcat
     6901 tcatcggtga ttcatacact ggtgttaacc aaatataatc aacacccaat aacttgatat
     6961 aatccaattt ttctataatt ccattgatat ctcctatacc attccccgtc gtatcattaa
     7021 acgacttagg ataaatttga tatacaacgg attttctcca atctatttct ttcgacacac
     7081 aattaccacc ttataacgta ataaaggacg tccaaataac gaacgcccct tttttatttt
     7141 attaatcttc aacaatttct ttcgcttttt gtttactaaa atgagacatc acaattgtta
     7201 gtatacatgg tacaacaata gcaatagctg tcacaataag atatactggc caaaattctt
     7261 tttgaattga aatgaatgct ggcacgccac caacaccaac ttttccaagt acgttattca
     7321 taccaacgat tgcccccaat acacaagacg ttgatatcgc agcgataaat ggatatttca
     7381 gaggtaagtt cacaccgaac atggctggtt cagtaacacc taacatacca gaaatacaag
     7441 atgttaatgc caagccttct tctttaacca ttttacgacg tttatagaca aaccatgctc
     7501 caaatgctgc agagccctga caaatattgg aaatcgcaac aattggccat aaatacgtac
     7561 cgcctaagct gctacccatc aattggaaat ctactgctaa aaacatatgg tgtagtcctg
     7621 taattacaag tggtgcatat aacaatccat atattgctcc gccaagccat cctgcatgtt
     7681 ggaatataaa tgtaacacca gatgtaatac ctgtaccaat caataacgca actggtccaa
     7741 tgataataaa tgctaaaaat ccagtaacta aaagcgctac gggtccaacg accaacattt
     7801 ttatcgaatc gtgaacgact ttatttaatc ctttttcaat tttagctaga acgtaagctg
     7861 caattaaaac tggcaacact tgaccttggt aattcaactg cttaatctct aagccaaata
     7921 agttccacgt cggaatattc ccttttgcca aatcatactg agatactaat tgcggatgca
     7981 ttaaaatcaa acctaagact atgcctagaa tcggactacc accaaataca cgcatactac
     8041 tccaaccaat taatgctggt aagaaaataa atgccgtact cgcaatcaca ttaatgatgt
     8101 ttgaaatatc agcaatttgt ggatacatct caataagtgc ttttggacca aataaacctt
     8161 tcattgtaag taaattattg attcccatta acaaaccagc tgtcacaatc gcaggtaata
     8221 ttggtataaa aatatccccc aacaatttga tcaaacgttg tactggattc cctttttgtg
     8281 cagctgcttg tttcgcttca tctttcgaag cttcttgagc acctgtttca tcaataaact
     8341 gcttatacac ttcatcgact gttcctggac caatgacaat ttgatattga tggtctgctt
     8401 taaactgccc cttgaccaac gcgttattac ttaatgcgtc tttatcaact ttactttcat
     8461 ccttcagcac taaacgtaat cgtgttacac aatgcgttgc agcttcaaga ttttcttttc
     8521 ccccaatagc ggttacgatg gcttttacat cttctctttt tacagccata tatttcactc
     8581 ccttaatgtc ttaaaacgag tataacttgt ctagacaagt tatgtaaagg ctttcaacaa
     8641 aatattttta ttttgtcaca attatctggg gtagccattt cagaaaatca atgagccata
     8701 acgacatatg tagcaataac tcctcgctac aattgcgtta ttaacaatac ctcaccacgc
     8761 tctcaccatt ataaagtgta gatgcatggc caactcctaa attgaaaaat gcatatctat
     8821 aaatagcaaa cttgtccaca caagccatcc atcatatttc acaaaacaaa aaagacattt
     8881 agctatgtat attgcacaag ccaaatgccc ttccaatctc aatgccttat catttctatt
     8941 atcaaaaatt acgagccatt caaagacaaa taaaaaaggt aaatactcaa aatttgagca
     9001 cttaccttca ttatatatag aatttaatat aaatattgat ggcggaggaa gagggattcg
     9061 aacccccgcg agccgttaag cccctgtcgg ttttcaagac cgatcccttc agccggactt
     9121 gggtattcct cctaaacaca atatttatca tatatgaacg ttctgtaaaa gtcaatattg
     9181 tttttaagca ttacatgatt accacaaatc attgtcttcc actacagttg acctataaac
     9241 gaatgtaaaa aatcactact tataattaat ctatttgttg tcttacaaac ctttgttttt
     9301 aggttacaaa gatggcatgt gacgttgata gatactagat tttttcaaac tcgattcagc
     9361 atgtcacaac gtcaacgtaa ccaccatttc catacaaaga ttatacacaa actttactag
     9421 ctaaatactg atctactgct ttcgctacgc ctctaccttc tttaattgcc catacaacta
     9481 aactttgacc acgtctagca tctccagcag caaatacctt ttcattatta gtttgatagt
     9541 ttgtatcatc cgccacgatt cgatttctat ccgttttaat gttaaaagca ttcggtactg
     9601 ttggttctgt accttcgaag ccgattgata ataatacaag gtcagcaggc caaaatcttt
     9661 caggtccttc tttcatgacc ataccatttt cgccttgctc taaaatttga gtatacaaac
     9721 cacgtatgtg tcctttatcg tcaacatcgt aacgcattgt ttgaacacca tatgcacgtg
     9781 gttccttacc aaacttagct tcgtactctt ggtgcgcata gtccatttta aacaccggca
     9841 ttgctaaagg ccatgatgca ttttctgtaa atgtaattgc ttctggcaat ttcgtatatt
     9901 tattaaattg aacaatcgat ttacaatttt ctcttaatgc tgtcgctaca cagtctgccc
     9961 ctgtatcacc agcaccaatg ataatgacat tcttatcttt tgcagttatt gttatatcat
    10021 caatttctcc atttaacaac tgcgtttgtt cagttaaata atccatagcg aaatgtatac
    10081 catcacccat gcgtccttct aaaggtaaat ctctaccttt ttgtgcacca gtacataata
    10141 taatggcatc atactcagat tctaacgttg ctttatcaat atcaacgccg acttcaacac
    10201 cattaatgaa agtaatgccc gcttcttcca ttaacttaat acgacgtcga accacatctt
    10261 tatcaagttt catattcgga ataccacaca ttaataaacc gcctgattct ctagcacgtt
    10321 cataaatagt tacttgatat cctagtagat taagttcttc agcagcagct aatcctgctg
    10381 gaccgcttcc aacgattgcc actttttcat ctctacggcg actcggaact ttcggcgcta
    10441 cccaaccatt ttcaaaagct tcatcaataa ttgtgcgttc aataccttta atcgcaatcg
    10501 attctctatt aatcttcatc acacaagcac tttcgcatgg tgcaggacat acacgccctg
    10561 taaagtcagg aaagttattt gtttcgctta agcgttcata agcagtttta aaatcttgat
    10621 gatacactaa gtcgttccat tcaggaatgt agtttccaat tggacaacct attgtttccc
    10681 taccatactg ttgtccggtt tgacaaaacg gcgttccaca atccatacat cgtgcacctt
    10741 ggatagaggc atcttcttta gtaaatcgtt gttgatatgc tttatgatgc ttcaaacggt
    10801 ctaccagtga taattcacct aagtactgtt tgtcatactt cataaatcct ttaaattcac
    10861 ccatcgtatc tccccctttc cttaatacac aacggctggt ttatgtttag catcgattgt
    10921 tttactgtca tcgtaaaatg cagctaacat cgcttcatct tcattgtcat gtaatgattt
    10981 gtgcaaatga attttttgca tcattaattg ataatcttta ggaataactt taacgacgac
    11041 atcttcaatg cgatcaaaat gttttaacac atgaatcgct ctcgtactat tcgtgtgtga
    11101 cacatgttct tccagcattt gcttaatgaa tgctttttct tcttggtgtt taatctttgt
    11161 aaacgaaagc gtatctagtt gattattttc aacaaaagct tctacatcag acgggataac
    11221 gtaagcaata ccaccactca taccttgacc gaagttctta cctacatcac ctaaattaat
    11281 gacatgtcca ccagtcatat actctaatcc atggtcgccg ataccttcaa cgacaacatc
    11341 tacaccacta tttctaatac agaatctttc tcctgcacta ccgttaataa atgccttacc
    11401 acttgtcgca ccatagaatg agacgttacc agcaataatt tcattttgtc gttcttcaaa
    11461 aggtgctttg acaatgaccg taccaccaga taatccttta ccaacatagt cattcgcatc
    11521 tccagtatga tgaatcatta agcctttcgg tgcatatgct gcaagacttt gaccagcatg
    11581 accattcgta taaacattaa ttgtattttc aggaagtcct gcttctccat attgtttcga
    11641 aatctcacta cctgtaataa cccctacatc acgttgttca ttatttactg taaagctacc
    11701 tgtatagcga cgcccttcag caatatatgg cttcgttact tcatataaat ttgttaaatc
    11761 aaatccatgc tcaagattat gattttgttg aatttctttt gtgtttggcc catcgaaagg
    11821 acataacagt ttttcaacat caatactagc cgctttgcta ttcgctttta atgttgatga
    11881 tcgttgtaat aaatcagttc ttccaactaa gtcttctaca cgtttcaaac ctaaagatgc
    11941 taaaatttct cttaattctt gtgcaataaa atgcataaaa ttaacaacat gatgtgcttt
    12001 acctctatat aaagcacgta aatctttgtt ttgagttgca actcctactg gacatgtatc
    12061 tttatggcat acacgcatca taatacagcc caacaccact aatggtgcag ttgcaaatcc
    12121 aaattcttcc gctccaagcg cacatgcgta cgctacatct ttaccagtta ataacttacc
    12181 gtctgtttct aacttaacac gacttcttaa gtcatttagt tttaatgttt gatgtgtttc
    12241 tgctaaacca atctcccaag gaacaccggc atgctgaata ctcgttttgg gtgaagcccc
    12301 tgtaccacca tcgtaaccac tgatgacaat tttatctgca aatgcttttg ccaccccaga
    12361 tgcaatggta ccaacacctg ttttcgaaac taattttacc gcgatatctg catctttatt
    12421 cgcatttttc aaatcatgta tcagttgcgc taaatcttct attgaataaa tatcatgatg
    12481 tggcggtggt gaaatcagac cgatacctgg cgttgaccct cttgtcttcg caatccacgg
    12541 atatacctta gtaccaggta attgaccacc ttcaccaggc tttgcacctt gcgcaacttt
    12601 aatttgaatt tctttggcat gttgtaaata atcactagtt acaccaaaac gcccagaagc
    12661 aacttgttta atcgcactta ctttgttgct tccatcaact tgtacttcat aacgttttgc
    12721 atcttcgcca ccttcaccac tattactctt tccacctaat tggttcatgg cttgtgctaa
    12781 cgtttcatgt gcttccgctg aaatcgatcc ataactcatc gcccctgtat taaagcgttt
    12841 gacaatgtca cttaccggtt caacttggtc gatgtcaatc ggtgtacatg ctttaaattc
    12901 aagtaaatgt ctaatgtgat ctgttctatt tttgttcacc gcttcagagt atgctttaaa
    12961 ttgcgcatag tcattttctt tacatgcgtg ctgcaataag aaaatagatt ccggattaaa
    13021 agcatgatgt tgaccttgtt gtctccattg gaatgtacta cctgatgcaa gataattatc
    13081 atcactttgt tgacgtgctt tattttcagc atcaatttga tcaatcgaaa taccagataa
    13141 cttagactgt gtcccagtaa aataacgatc aatcacatca tgagacaagc caatcgcttc
    13201 aaatatttgt gccccttgat aactttgcac tgtcgaaatt cccatcttag ccattacttt
    13261 aatgacacct tctgacaata catccgtata tgtcttaaca ttatcgacaa cggtgccttg
    13321 taacccttct gtcaatgtca gttgttcaac tgtacgttgc gctaggtatg gcacaattgc
    13381 attcgcgcca tatgcgagta aacaagcaac atgatgcact tctcgtgtct caccagattt
    13441 agcgactaaa cttgtagaca tacgtaaatc tgctttaata agtaattgat gcacatgact
    13501 tattgcgagt aacatcggca ttgcaaagcc attgctatca actaatccac tatcatctaa
    13561 cactagaatt tgagcgcctt gctttacagc attcactgct tctcggccta atgcttctaa
    13621 cgcatcttcc aaatcccctt catataccgt tgataaataa gttaatttaa aatgttcctg
    13681 atcaatcgct gctaagtgtg attcattcaa taccggcctt ttcaattgaa tacgatctaa
    13741 aaccgtttcg tcaggtgcta gtaagttacc ttcgccacct aaataagaaa gttcactcgt
    13801 tacgattttt tcacgatacg catcaattgg tggattcgta acttgtgcaa acagctgttt
    13861 aaagtaatta aatagtgatt ctggtcgctc gttcaacact gcaattggcg catcatatcc
    13921 cattgcaccg ataggatcct tcttaccttc tacaagttcc tgaatatact tatgaatctc
    13981 ttctttcgtg tatgcaaact gacgttgtaa tttaaataac gtctcatctt tccattgcga
    14041 atcttgatat tgtatatttt caaaatcaaa gtcaacttta tggttatcaa tccacgcttt
    14101 atatggtaat tctccagcaa tcgcaccttt taaatcatta ttttcaatga ctttattctg
    14161 tttaaaatca acaagcaata actttccagg attcaattga cctttaaaag caacattact
    14221 ttcaggtacg tccacaacac ccacttcaga tgaaaagaca ataaagttat ctttagtaat
    14281 cgtataacga cctggacgta atccatttct atctgtaagc gcgccaagtt tgtcaccgtt
    14341 acagaacgaa atcattgtag gaccatccca cggttccatt aaataactat aaaattcata
    14401 aaacgcacgt acatttgcat cattcgcttc attatataac caaggttcag gtatgagtaa
    14461 catcgctgcc ttttctggct ccatggctaa cgataagaac tctagcgcat tatctacaat
    14521 ggcagagtca ctaccatcct catcgacaat ttgaaacact ttatgttgat cctcgccaaa
    14581 taatgtttcg attaatttat gttggcgtgc tcgcatccag tttacattac ctttaatcgt
    14641 gttaatctca ccattatgca ttaacatacg gttaggatgt gcccttttcc aactcgggaa
    14701 tgtattcgta ctaaatctcg aatgcactaa ccctagcttt gattgatata aatcatccga
    14761 taaatctgta tatagttttt taatttggtc tgatcgtaac caacctttat atacaattgt
    14821 tttgcgtgat aagctcgtaa aatacaattc taaatcgcac tgagtcgaat agaactctaa
    14881 ttgttttctc gctaaaaaca aacgcttttc aacatcttca atgtccctaa tatcaataaa
    14941 cacttgttga atgactggca tcgtatctgc tacatgttta gcaatggcat ctttattaac
    15001 tggtacatta cgataaccaa gaattgataa cccttcgcct tcaaaatatt ttttaaaaac
    15061 tacttcatgt tcagaaccta aaatgcgttc tttggaaaaa aataacccca cggcatattc
    15121 accttcacct gggatatcaa agtccgttac atgttgtttg aaaaatgcaa aaggtatttc
    15181 agtcataata cctgcgccat caccagtgat gccatctgcg ccgaccccgc ccctgtgatc
    15241 taagcgtcgc aacatttcaa gcgatttatc aatgatgtcg tgagaccttt tattatccat
    15301 attcgcataa aaaccaatac cacacgcatc atgttcctca cgatagtcat ataagccttt
    15361 aattaatttc tcattgtgca tgatgcacac ccctttttta gaatattctg atattagtta
    15421 ttaatgataa ttactataat ctaaaaaatt tatcttttca atatataaaa tagaagatat
    15481 tcatctaaaa aatagaacat ttatcaataa tattgctata atagttacaa aacactcatt
    15541 tttggaggtg cctatatcgc tatggaaatt aaacaattaa gatattttat cgaggtcgct
    15601 aaaagagaac atatctccga aacagcactt gaactaaaca ttgctcaatc agcgataagc
    15661 cgtcaaatta cattattaga acaagaactt aatgtgtctt tatttaaaaa gcaaggacgc
    15721 aatattacgc tcacatctga agggaaatta ttatttaatg aagctctgcg tattattgaa
    15781 catttagata gcacgattga acaatttcaa agccatggat taactaaaaa taaaagtatc
    15841 tacattggct atgatgagag tgacgtatcc cacatgttac taccacttat ccaaacgttt
    15901 catttacaaa atgatacaca tgtcataccg agcttattag aacatgacac aattataaat
    15961 agcgtattaa atgggaatat agacattggt ttcacggaac ttacaccaga aatacgtaaa
    16021 cacaaacaat tacatatgct acctttattc gaagagcact atcatttata tgcgccttca
    16081 gacgatccaa ttacgatggc gacacaccca ccattaattc agtttgagca tagtcatatt
    16141 tattgcttgg caccatttgc cgaaactgta aaaaaacaat tgcgcaagat tactaaatca
    16201 gatgtataca caatcagtag ccaaccactt gcgcagtatc tccttcgtca aaaagaaggt
    16261 tacatcattt catcacaaaa tatacattta ccagaatcta aatcatggat agatataaaa
    16321 ttagatcata ctgaattaaa aagaacgata tgtgctatta caaaggagcc ttatacaaag
    16381 agtgatattg gcatattatt aacacttatt cagcaattaa tgactaaaac gtctacattc
    16441 cattaagtaa ttcgatgcta tcaatgatga ttttcgtttt acacttagca gtaatatctt
    16501 tgaaaataaa aaattaaggg cgtataatca ccatattaat tcattcatag aattggggtt
    16561 ttgtttttga aatatagaaa tttatttaca aagccattta atataatttt aggtttgttc
    16621 tgcatcgcat tcattggtgc tattttattt acattcaata atgagaactt ttacaacaaa
    16681 ccaattggtc aaattataga tgtcaaacat gtttcttcga cacctacaaa agatgcacaa
    16741 aataatcgtg atattaaata taaaaatcaa ttaaaagtca aaatattaaa tggtcaattt
    16801 gctggagaaa cgacgacgat taatcatcag tacgtcaaat cgcaagcaga ttctgaggca
    16861 tttcgcacac acgaaaaagt attattacat atttctaaca agccgagtga tgcttatatt
    16921 atagaaaaga agcgtgatac cttaacggtt atcatcactg gtttgttctt attaactgta
    16981 ttattggttg gtcgcaaagt cggactgcaa tcgattttat cgttaatctt gaattctatt
    17041 gccatattaa tcgcaattta cattcatatt caacatagca atattaattt attcttactc
    17101 atgaccattg ccatgatctg ttcaacaata ctcactttat tgctcgttac aggctggcat
    17161 atgcgtacac tcattaccat agccagtaca attatcggaa cttttttgag tataggttta
    17221 acagaattaa tcatatatat ggcagatggt aaaggcatta aatatgaaac gatgaacttt
    17281 ttatcattac caccgaaaga tatcttccta gcctcagtgt taataggttc acttggcgct
    17341 attatggatg ttgcaattac aattgctagt ggtatgcatg aaattttaca gcgtacgcca
    17401 cacatttcaa tgaggagatg ggcgcttgct gggcgaaaca tcggccaaga tattatggga
    17461 acaatgacta acatcttatt attctcatat ttatccggtg cactacctat gtttttaatc
    17521 tttttaaaaa atgccaatac agtgacttat actatttcga tgaattggtc gttagaaatt
    17581 gcgcgcgcac taacaggtgg tataggtatc gtacttacaa ttcctatcac aatattgttt
    17641 atggaaatat ttgaaacatt aaggagggcg aaacaatgaa tgctgtattt atattggcgt
    17701 tattgctcct ctttctgatg ataattttcg gaggtaaaaa gggattcatc tcttatttaa
    17761 ccctattttt aaatttcgct attttaatta ttagtattgt attgattatt tttggcgtac
    17821 cgatttatgt cgtcacattc tttttctgca ttattattgg cgcttgtaat ttattcgtac
    17881 tcaatagtta caatgttaaa acacaagctg catttatcag cactatcgtt acaacaatat
    17941 tgttgattac actcatttat ttatcggtct acttcggtca tctacaaggc ttttcaaccg
    18001 aacaacaaga tgaaacatat gtgtattcaa tgaatattgg cattgatatg gttcaattta
    18061 tggtgttcac tattattctt gctgttattg cagctgtgat agatttaaca attaccatta
    18121 gttcacccat ttatgaattg catcaagtga atccaacgct tacgcaatac gaattattcc
    18181 aatctggcat gcgtgttggt agagaaattt tagcgacatc tgcgaacacg atttaccttg
    18241 ccttttttgg tggccaactt gctttattta tttggttttt caaacttaaa tattcatttg
    18301 gtcatattat aaactcgaaa atatttgccc aagaatttat ttctattatt ttaggcggta
    18361 ttgccgttgc aatcagtatt ccgattacgg cttggattac ggcattttta ataaaaagac
    18421 catctcgaca gcgcaaaaat gatgagtcta tcaattaatc gcaactagca atataactta
    18481 agttaagcga cctgtggata tatgtcaatt gttcactagg tcgcttttta ctatagtaaa
    18541 ttgtccgatg atctataaca aaaagcacct ttattcatca ttaattgttg tggtcgacga
    18601 tgagtaaaga tgcttttaaa tttaatttat tttatagtta acgccataat atgaacaggt
    18661 cttccgacga acatactatc tcccatatat tgatatcctt gttggcgata aagtgccatg
    18721 gcatgtggat tgtcagtatt aaccgttaac acaatctcat taatatcctg aaatgttgaa
    18781 gtgataaatg acgccaattt ttccattacc actttaccta ttcctctatt acgataacgt
    18841 tgatcaacac taaatgacct gaaaaatact gcatcttggt tatcgctaaa tggtgcgacc
    18901 ccttttccac gatgtaatgt aaaaaaggcc acacattgcc tgccatccat tacaacgatg
    18961 ggataccttt cattatcaga cattgcagct gtaatatttt cctctggcgt tttaacaaac
    19021 ttcaaatcac tttcacttaa ttgaaaagct tctaacatcg aataatcttg tgggacataa
    19081 tgtcgtaaca tgatggtgtc attatttgtc atgtttacca ccataagttt caatccaaac
    19141 tttgacagca ggcgcaatca acgcatcatt atctttatca atccagcgta tatccgtaat
    19201 ttcattattg atagttacgt tttcccaatc gattttggtt aatgcgcgaa atccatttaa
    19261 ctcagttaac atatcctgtt gtggatatgc aggacctaca attgtcccga catattcaat
    19321 ttcatccatt gttaatgtta aatttaattc ttcttttact tctcttaaca gcgcgtgtac
    19381 ttgtgattcc ccttcttcta ttttaccacc cgggaaataa tacttttcgc gattccttac
    19441 ttgaacaagc aatattttat cagctgtttc ttcaactaaa cagacacatt taatcatctt
    19501 tgacacccca actttgtgaa atcaattttt caaattatac tgtacaatta tgttatcata
    19561 tatgagtagt tatagcgcaa aacgttagca attcagcgca cccaactttt catataaaca
    19621 gaagatacta gggggaatta ttattatggc aaaacgttcc aaatcacaac gtttatcaag
    19681 tttactaaat gtcgcaggtt tcatagtcga cggctacaat ggctataaat atcatgctaa
    19741 aaataaaaaa ttagtatatc tttcattagg tttaagcact gtaggaaccg tgttagactt
    19801 ttacatttca attaagtcac cacgtaagtt caaaaaagca gtggcagttg ttactttaat
    19861 aacaaacggt gctagattat ttacaagcat tcgcaaagta aaacatgaat actaattcag
    19921 aaaaggattg gtcgaacata gaacatgaag ttcattcgac caatcctttt tcatatacaa
    19981 aaattcctat tacaacaatc acgactttga tagccccgcc ataaaattta ggattcaatc
    20041 caacttttca gcttgtgaaa tgtaatagga attcattata tatttatata cgtaagactt
    20101 tagtgaatat atctataatt atttacttgg taagctggta ccgttctgta agttaaaata
    20161 cctggtgcag ctgaatagtt catttctgaa actaaaatac taccatcgtt atttacacgt
    20221 tctacaaaca taacatgacc atagtaacct acatctgttt gagcgataga acctacagta
    20281 ggtctattgt cgatagtgta accatctgct gccgctgcgt tatcccagtt attagcattc
    20341 caccaataag tactaatacc tttaccaatt tcagcacgac gattaaatac atgatatgta
    20401 cattgacccc atgtatataa gttttggtga ctgaatactg gtgtattgta acctctattt
    20461 gtcgttgttg cagatcctga gttcgtagat gcattaccag ttactttcaa tttttgaccc
    20521 ggatatataa agaaattatt taagccattt aagctcataa ttttttgata agttgtacca
    20581 tattttgatg caattaatga caatgagtca cctgcttgta ctgtatagta tgatccgcca
    20641 cctgagttcg ttgatggacg gctactattg ctcgcagcgt tacttgagct agcagtacct
    20701 gatactttta atttttgacc tggataaata aagaaattat ttaaaccatt aagtcgcata
    20761 atgttttggt aagttgtacc atattttgat gcgattaatg ataatgagtc gcctgcttgt
    20821 actgtgtagt atgatccgcc acctgagttc gttgatggac ggctactatt actcgtagaa
    20881 ttacttgagc cagatacttt tagtacttgg tttgggaaaa ttagattaga tgttaaattg
    20941 tttaatgact ttaatttagc aatcgaaatc ccatacttat ttgaaattgc ccacactgat
    21001 tcacccggtt ttactgtgtg agttgtagcc gcatttgctt gagttgccgc aacagcgcta
    21061 atcgcgcttg tcccaataat agctgcaatt actttttttt gcactttaaa atcctcctct
    21121 tgcttaactt tcctaacatt cttttatccg aatttatgaa tactacatca ttatacgatt
    21181 ttattatgta taataggttg atgtttgatg acattatgat tacaaaaaaa tcatatactg
    21241 tatcatcaaa ttttataatt accccttaaa attattacaa cttattagat tttacaatat
    21301 ctaaattatt acaatttcat aatatttcac tataaaatga ttacaatccc tttctctatt
    21361 ggaaataatt ttattctcca acaataacgc cctacaaaca taagcatgaa ctttgcttgt
    21421 aggacgcaat ataatttatt ttgctaatga cgtttctatt gccttaatct catctttaga
    21481 taaattaaca ggtttctctc catctttgac atcttcctgc aacgcttttt gagcttcttt
    21541 tgaatgatac aattctacga ttttagcata tgttttgtta tccaagtctt tgtcattaac
    21601 tgcaacaata ttaatatatg gctttactgc atctgaattt gatttttcta aaaatatcgg
    21661 atcattttta ggatctttac ccgctttagt tgctacaccg ttattaataa ctgcaatatc
    21721 gacatcagat aaagcacgtg cagtttgttg tgcatctact gcagtaattt ttaaatgttt
    21781 tggatttgac gttatatctt tcaccgtgcc tgctaatccg aaatcttttt tcagttttat
    21841 taaaccagct gcttctaata gtttaagtgc acgtgcttgg tttgacacat catttggaat
    21901 gacaacttta gcaccatctt taaccttttt gacatcttta attttatctg agtaaatgcc
    21961 caacggtgct aaaactgttg tacttaatgc tgaaatcttt gttcctttat gcgccttttt
    22021 atattgatct aaaaatgcaa aatgttggaa tgcattcata tcaatatcac catcatttaa
    22081 tgctttattc ggtaaattgt aatctgagaa gtgcttaatc tccacatcaa tatcatcttt
    22141 tttagctaat tctttaacct tctcccaagc cttagtgtca tttgatgcga caccaattgt
    22201 tactttttta tcattgttac caccacacgc tgctaataat acaagtgcta cgataactaa
    22261 cccaatcaat cttttcattc tatcaattcc tttcaaaatc ttcactatat atcattaatg
    22321 tctacgtatg aatctagcta gaacattccc tagcgtttga atcacttgga caataatgac
    22381 taatacaata acggtaataa taatgaccgt cgtatcaaat ctttgataac catacactaa
    22441 agctaagtct cctataccac caccgccaac agctcctgcc atcgccgtac ttccaataag
    22501 tccaataatc gcagtggtaa ttgctaatac taacgaacct aaagcttcag gaattaaaaa
    22561 atatctaatg atttgtagtg gtgaagcgcc catcgctttc gccgcttcaa taatcccctc
    22621 gtctacttcc aataatgagt tttcaacaag tcttgcaatg taaggtgcca catatactgt
    22681 taaaggcacg atggcagcag tcgtaccaat tgaagtacct actactaatt ttgtgaatgg
    22741 cacaatcgca attaacaaaa taataaatgg tagtgacctt aaaatattga ttaaaggatt
    22801 taaaacttga tgtatcacta tattgggcca tatgccttgt tttcgagtaa ttaccaataa
    22861 gacacctaat ggaataccaa tcactgctcc taaaaataaa gcaatagata ccatatatag
    22921 cgtttcgtac aatgcttgta ataactgtgc actgtctaaa tcagaaccaa acatatgtta
    22981 atgcacctcc tcaaattgaa tatttttctc tttgaaatat tgatttattg ccgtgtcttc
    23041 aaattgttga tccatattaa atcgaagcca catataacat acggtgttac cttgtatttc
    23101 tgacatagat gaaaataaaa ttttaacctc tctgccacaa atttgaatca agtcatttat
    23161 aatcggttgt gtcacctgag tttcctcgac gaagatttta taatctttaa aatcgccaac
    23221 ttgttcgtca ttcaatcgac gaatcaatga tgtacttggc tcagtctgta taactgtaga
    23281 cacaaaattt tgagcaatcg tcgttttagg atgactaaac acctctttaa cagttcctgt
    23341 ttcaaccact ttcccctttt ccattacagc aacacgatta caaatgtctt taataacgcg
    23401 catttcatgt gtaatcatca taattgtaat gccaaaggtt tgattgacat tctttaataa
    23461 cgtcaatatc gaagcagtcg ttgctggatc caatgcgctt gttgcttcat cgcataggag
    23521 tattttcgga ttagtaacaa gcgctcttgc aatagccacc ctttgcttct gcccaccaga
    23581 taattcatca ggaaattggt cttttttatc actcaatcct acaaattcaa gcatttccgt
    23641 tactcgttgc ttaatttctg ttttgctttt cttacttaaa atgagtggca ttgctacatt
    23701 tttaaatacg gtagctgaat ttaataaatt gaaatgctga aatatcatac cgatatcttt
    23761 cttaatatcc ctcatcattt tatcgctata attcgtaata tcatgtccat ctacaatcac
    23821 ttgtccattc gaggcagctt caagatgatt cacgagtctt accaacgtac tttttcctgc
    23881 accactatat ccaatcacac caaaaatatc attgcgattg accgtaaatg atacgtcctt
    23941 caaagcatct attttttgct tctttttatt aaaggtctta cttacctgtc gaaactcaat
    24001 catcatcgcc cctcctacaa attcttatta atccactagg aataagagca ttatatgtaa
    24061 aattgcatat atcgtcaata caatttgccg aattttctaa aaaattaaaa aataagtaat
    24121 tcatgtgaca atgacgaatt gtgagactac tatgacattt atcaaattaa atccataaaa
    24181 atgtccacca atcctccaca acgcaattac taaatattaa catcgcacaa aaaagcacta
    24241 gcatattcaa gaacaacaaa cgttgaactc aaaatatatg ccagtgctgc tattatttat
    24301 aaagtatcta gtgcttgttt taaatcatcg actaaatctt cagtatcttc aatacctaca
    24361 gaaattctta caagtccgtc tgtaatacct tctttagctc gaatatctgc tggaatggat
    24421 gcatgtgtca tcaatgcagg tactgaaatt aaactttcca ctgcacctaa actttcagct
    24481 aatgtgtaat acgatgttgc tttaatcaat tgtttggcac tttctgtatt tttcacttca
    24541 aatgcaatca cacctgtatg gccatccgct tgagccatat ggacatcatg atttaaatga
    24601 ctttcaatac ttggatggaa cacttgttgc acagctggat gtgcttgtaa cattttaata
    24661 atttcaataa cgctgcgatt aatttgttcc atacgtaaac ctaatgtttt aatacccctc
    24721 acaagtaaat agctatcttg aggtcctaaa atgccacctg ttgaatttga aataaatgct
    24781 aaacgttctg caagcttgtc atccgatgtt gcaactaaac cagcaacgac atcactatgt
    24841 ccacctaaat atttcgttgc agaatgtaag acaatatcga tacctaaatc taatggattc
    24901 tgataataag gtgtcataaa tgtgttatca acaactgaaa tcaaaccgtg ttctttcgca
    24961 atttcagcag actttttaat gtcagtaaca cgtaataatg gattagaagg tgtttcaata
    25021 aacaacatct ttgttgttgg gcgtatcgct tgtacaattg aatctgtatg cgttgtatct
    25081 acaaaatcca cttcaatgcc aaatcgtgta aatacttttg tcaatgcgcg ataagtaccg
    25141 ccgtatacat ctgaatttaa aataatatga tctcctttgt ccaacagcat aacaactgca
    25201 ctgattgctg caacacctga actaaatgca aggccatgtt tgccattttc taatgtcgca
    25261 ataacgcttt ctacagaact tcttgttgga ttcgcagtac gagaatattc atatccttga
    25321 cgtaaatcac caatatcatc ttgtaaatat gtacttgttt gataaattgg tgttgtaacg
    25381 gcacctgtat aatcgtctgt tgtgtgccca ccatgaatta atttagtttt cttgttcatt
    25441 attattctcc tcataattaa atatttgctt agacatatat cgatcactac catctggaaa
    25501 tacgacaaca atcgtacctt cagataattg cgcttttaaa ttcaatgcac cttgtaatgc
    25561 tgcacctgaa gaactgccta ctaacaaccc ttcatttata gccaaacttt tgacatttcg
    25621 aaaggcatct tgatctttaa tcgtaaatat cccatctaca agacgtctct ctaaaaatat
    25681 cggccatttc tcagaaccga taccttcagt gtcatgtgca tgagctggcc ctccatttaa
    25741 cacggaccct tctggctcaa cggcataaca ttgcacgtga tgttgcttta aataacgtgc
    25801 ggtacctgta aatgtaccgc cagagccaat accagccaca aaataatcaa tttgctgtaa
    25861 tgctgaagtc aattcgggtc ccaatgtatg aaaatatgta tccggattat gttcggattc
    25921 aaattgattc atataaacgg caccatattt ttcagcatag gaacgtgcag ctaattgtgc
    25981 cccatgcata ccttcagact gactcgtcct tgaaacttct gcaccaagcg ctatcataat
    26041 attaatcttt tcttctgaaa aaccatacgg cgcaaagatc ttacatttca aatgatgtct
    26101 attcgctgca atagctaacc ctatgcctgt attaccagca gtcgcttcaa caatagtttg
    26161 acctgcacgc acacgccctt cttgaattgc cttctctact aaatatttcc cgagtctgtc
    26221 tttaacactg cctccaggat tccattgttc aagcttggca taaattttaa ctttatcatc
    26281 actataatgt tctaacagta ctaatggtgt attgccaatt aaatcataag taatcataga
    26341 tgcaccctca tctgacatgc cgatcaaatg aatgaaacct ttcttcatgt ctcaatttta
    26401 attcttactt ttcagataag aattataaac gacattttgt tattttgcaa ttatctaagt
    26461 ttcgattaat tcagaaccag tactaaattt tcaattccaa acaaaaaaac acctgagcaa
    26521 cacaaatact tgtgtgtcag atgcttctat atattaacta aataattgca cgataaagac
    26581 taaaataata acgacaggca tcgcatactt aattaagtaa taccaaccac tgaataatct
    26641 aaatcgatct ttaccaaaat attgttgtaa taatttttta tctaataatt gtcctacgac
    26701 aagcgtagta cctaatgcgc ctaatggcat caatacattc gaaacgatga aatccatatt
    26761 atcaaaaatc gttcccgcac cgaatcttac atcttttaag ataccaaaag ataaggttgc
    26821 tggaatacta atgataaata ctaaaatact accgatcact gcgacttttt tacgttttgt
    26881 attgtcattc ttcgtgaagt tagaaacatt taattctaat aaagaaatag atgacgttaa
    26941 agccgcaaat aagaacagca ctaagaatcc caaatagaat aatgtgccta gatgcatttg
    27001 actaaagacc attggcagta ctttaaataa taatccaggc ccttcttgtg gttcatagcc
    27061 aaaactatgt aaagccggaa atatagctag acctgccaat acagatacaa agatattcat
    27121 aacaacgata gaaatagctg atgacttaat cgtcatgtct ttagaggcat aactcgcata
    27181 agtaatcata cctgtagttc ctaatgataa cgtaaagaat gattgaccta gcgcaaacaa
    27241 gatgccatca gcagtaatct ctgatactct tggttgtaaa ataaatttca caccttctaa
    27301 ggcgccatct aatgttaaag acttaatcac aatgacgatt aaaaagacaa acagcaatgg
    27361 catcataact ttcgatgcct tttctaatcc tttttcaaca cctaacatga caataatcat
    27421 cgtagcgaat atgaatatac cttgccctag aacggttaac caaggatttg atattaccgc
    27481 ttcaaaattc atttcttgga gatgattgat gcgttgaaat ataactaatt gccataatac
    27541 ttgtccgatg taaatgacaa tccaaccacc gataacacta tagaagccaa ataaaataaa
    27601 cactgccaaa ttaccgttcc agccaatgat attgagccat tttttaccag ttaatttact
    27661 atatatttgt gttgtatatg tccgtcccat tttcccaaca gtgaattcca taatgagtaa
    27721 tggcaaccca acaaaaatgg tgaatattaa gaacatagct agaaaggcac cgccgccata
    27781 aatccctgcc atatatggga atttccacat ggcaccaaga ccgattgcag aacccgcact
    27841 agctaaaata aatccagttg atgacttcca ttgtgattgt tgtcttttca tcattcacat
    27901 ctcctttaaa gcgttaaagc gtctacgtgt ttaagtaaca ctctaacatg tatgtaaata
    27961 acatgcaata cacctgcatc aaaattgttt cattaatacg gtagcacctg gatttatcat
    28021 aatataatca actcttgtaa tgtgttgtca ttacgctaca ttaaattttc tggttcaacg
    28081 ctgtatacgt gcgccaatat ctcgccacat acaacaccat ctatatcccc aacatctcgc
    28141 cacataacaa cttcaggtgc aatgcccata aaatttccac gacattacaa tacaaatcaa
    28201 cttctggtat aactccataa tatttccacg acatcacact acaaattaac tttagctaag
    28261 ttccctatac tatcacgcca caaaaaacac tcaaatgaca aatataataa catcgtcact
    28321 caagtgttaa tttttaaaat cttcaattat gttaaagcat tgaaaaagcg aataacattt
    28381 tcttctaaaa tatctctgcc ttctccatgc gtcattaaat gatgcgaatc cttcagacca
    28441 tttaattctt tgtctactga tcctaaatgt tcataaataa aatgtgcact tgtttcatag
    28501 gatggcgcat ctttaccacc aaataatata ttagctggca ttttaataac atttaaattt
    28561 gtcatgatat catcaataaa atgttgaaac ttcgtaattt caccttcata atcatcaatt
    28621 gctgctaatt gcgcactcga tgcttgctga tctaaattta aaatattcga catgcgttga
    28681 ctataataaa ctaaatgttc tattaagcca tcgtcactct tttcctttgg tgctgacatg
    28741 acagcgatac gtttcaaagg atagtgttgc gccaatttta atgtcattaa tccacctaaa
    28801 gacacacccg ttgcactgat agattcataa ccttcattga ctaaaaattg gtaagctttc
    28861 tcaacttctt cccaccaatc atctacatta tatgtcatga aatctttcaa caataaacca
    28921 tgacctggat aattcggtgc ataacaacta aatccttggt catttaactc agctgcaaga
    28981 tgcttcacat cccgatttgt acctgtaaat gaatgtaata ataatatcgc atgtccattt
    29041 gtgcctttta aatacgatgg actcggtgtt ttaattctca tttttctata tacctccact
    29101 atgtctaaag atgtttgcta aacgcgttgt cgtcgatgat taataaagta tgggtatacc
    29161 attaagaata acgctaccca aatgattgct agtgacgtgc cgccaatgac atctgaaaag
    29221 taatgtgcat gaaaataaag gcgacaaaat aatatgctaa gccataatat tcccataacc
    29281 aacgcactca acacttttgt tattgtctta gcagcaagtg aaataataat gatcattaag
    29341 gcgaaatata ataatgtgct ggcgttggaa tgtccactcg gaaatgaaaa gcctgtatca
    29401 acggctaaat gattatatgg tcttggacgt aatacagtat ctttaattaa tttgttcatg
    29461 atgacacctg aaaccaaata tgtcacaaac caaaccgcta aatgcctctg tttaataaac
    29521 agtatgattg tgacgataat ggaaatcaac acgacacctt tgacatctcc aatttccgca
    29581 ctaaacgtca tatagtaatt aaacaaattg ttaacatact gacgttgtgg ctcaccgaaa
    29641 taatctgtaa accatgttaa tgatcccata tctatatttt taagccattc ttgatttgtc
    29701 actacactgt aaaacatacc tataaataca atcagcgcga ttaaaaataa aggcactgtc
    29761 attttcggtg atgttaattt tttatctatc atcttacaat ctcctcgtat catcattttc
    29821 attttacaaa tgttatccat aatatcaatg tgccacaaat ttcactttac cgacaatatc
    29881 aaaattataa agttcatatt gttatgtata ttgcaaataa aacattgtat aattgaaata
    29941 acaatatttt gctattttca atttagtacg atttatattt attatacaga gggggtaagg
    30001 cgtatcaata gagttatttt tgtctatata gcgttaatca ttacattagt tagattcttt
    30061 acccctattc atccatcatt ttcaaatttg atttactgga tatttgtatt atattttatt
    30121 cctattatac tatgcgttat cggtttcaag gccgaaaaac ttattgcaac aatggtcatt
    30181 atacctaatt ttttaggaat actttatcga ttatatgcct acgtcacaca tatactcttt
    30241 atgtaaaagg atagtgggca tgtctcgcaa caaatatgct tgcgtcgact tgtcaccatt
    30301 cgcaaatttt atgacatacg cctttcacgg gctatattca gacccacgca ttcatccacg
    30361 taataaacac atcatgtaat agaaaaacag cacacccaaa tatatggcgt tgcgctgttt
    30421 aaccaagcat acttctatag ctttaataag ccagcagaag catacctaac cttcttaaat
    30481 atgcttttcc aaattatcct caagtttgaa tacgataata cgttcacctg taactgtact
    30541 taaatcacta tggaagctca tcactttgat acctgtaatt ttaaaaatga tatcattcaa
    30601 atcttgctca ccggattcaa ctaattcaga acgtgttcgt ttaatattta ataatccttc
    30661 attcgtacta catacacgat attcagctgg cgttaagata ccttgtaaac taataatcac
    30721 catatctctt aaaatgtctg atttaactga caaggaacct ctgccaagga aatctttttc
    30781 ccattgcgta atggctttac tgatttcagc ttcgatttca cctttcgttc ttttcatatc
    30841 actaactcca ataatattaa aattgattac ttcatctttg tatcgttatc acgacatcaa
    30901 ctattacatt aagtttatca tttttagtat attttaagaa gctagaacat tgtagatatg
    30961 atgatatatt agttacttag catcgcaaca tatcatcgtt aaatccaact tttaaaacgc
    31021 ccttcctcat taacgctcat taaacgcagc caatgattag acaccttcct agcgaaatgc
    31081 tcattattcg cgagtagtct tgctacaaca tagtcgggtg cctgaataac gacaagtaaa
    31141 cgaattggcg aatgatacat cgtccgatca gcagccataa cagattgcca tgataagcca
    31201 tacatcagat cactcgcatt accttgcatg acaccaacac ctgacgtgac ggtttgtgtc
    31261 gctttattcc cacttccgta aaaatgcggc gcaactgtcg acgcataata ttgtaaatta
    31321 atccattgtg ccacaagtgc cggaccagaa atgatggtat ttaataatgt gccatcttta
    31381 tctttacgcc aatcataatt gtgtaaaaat gtccgccctt ctaaatcaat gccttttgtt
    31441 aattggcgtc gtccaattat aaatgatgca tttttagcca atccccattc tggacgtacc
    31501 tcactccaat cactcgcaaa ccgctgcgct tcttccactg gatgattcac acgaccaatc
    31561 gttggcagtt tgtccaaacg ttcgcgattc gcgtgttcag aaatcatcgg catcgcgtca
    31621 ttcaatgatt catatgcatc taaagcaata gaagataatg tgtctggcac atatacccat
    31681 gccaacgtat cagtagacgt atgatgttct gctaccgcaa aaacagttgt ctctggaata
    31741 tacacacctg attgttttaa tccttgtctg acatttggac gattacatat catcgctaat
    31801 aacttagcat taaaaccgct tgatgcgcca ccacaagccc cacattcaag tgatgcatga
    31861 tgtggattat tgtgagaatg actagcatga cctgctaaca caacgaacgg cgcaaatgct
    31921 tcggttaaat ccatcaattt caacgcttgt aacgcgaaat caatttgctc ttgctcagta
    31981 aatccaacag gtaagtctga tgttcggtca aactcacgat caatcgtcaa ctttgtttca
    32041 ggctttttca accacttttg ttttattttt tgtaaagacg cgcgactttt tctaggcata
    32101 atcgaattga caatggtact taagcttaaa aatggcccac ttaattcagg caataacaga
    32161 ctaggcatga cattattttt catcaattta aatgtgtaaa acatcgatga cattgtctgt
    32221 tgctgttgtc gataaacatt catatcgtag cggtctgcaa attctttaat gcgatatgcc
    32281 ggcggtacca tgacaggtaa tgaatcatgt ttgaattgtt cgtctacggc atctttttga
    32341 ataggtaatc caaagaagcc tgcaatacca atcgtttcaa agggccctgc tgcttcgata
    32401 tgtctacgaa atggttctga acgaacatct atacaaaatg caatttgcgc tttcgttgat
    32461 gtgcccatct gatttagctc gctattattt tcatcaactg cttgtgtgtc atttaacaat
    32521 actgaatgtg gctgattagc gttatcattt tctgagacat ttacttggtt tacatctaat
    32581 gcgcccgcca cactttcatg acctgcttta attttttgtt ttaactgaga ttcgtatgtc
    32641 atttcccagg caattagcca taaattttta aatacatttt tattcatagt tgctgcaaaa
    32701 tgaataaacg tttgaatttc attgacgtca tgttgtagta atacatcgct aggcatatca
    32761 ctgtagtaac accatgatgc aacagtttgc ttaaaccaat tttccgatct actttcacaa
    32821 tctttagcga ctgacttaaa ctcatcacca actagcaatt gttcgacaac taaccgaatt
    32881 gccaaataat ccgttaacaa atgttgttca aagtaatgct gttgtgaacg gtaatacaac
    32941 atacctgccc aacccggtaa cgccaaaaga tgtccttcaa cataagcttg gtagtcttcc
    33001 tgatctattg aaaaatgagt taatactgac tctatcgtca tttcaggatc attgggtaag
    33061 cctttaatca cttggcgctg tgctttagta aaactatggt catgttgcgc taaatgcaac
    33121 catgcatggt aaaaactttg ctcacgcttc ggcattgtcc aactcgatag aaattgatcg
    33181 atataaagtt tcgtccattt aatcatttga cgattcactt gttcgctaag tggctcacct
    33241 tgttcatcta ttattgcatc actcatcgga cgtacatcat agtgatgata tgattcagcc
    33301 atatcacgtt ttgatttttc taatagtaga tcagcaacaa catcaacatt tgaatgattc
    33361 atatatgatg caggtacgtc ttttaatgtt ttaatgttat caatataaag attgatgtag
    33421 tgttgcggga tattgtagtg atgttcaagt aacatatcag taacaagttg attaaagaca
    33481 ctttcatcta attcaccacg tgccacagcg ctttctatta atgctttatt tgggaaaata
    33541 tccacatctc gaacatcacg taaccatttt gcgacatctt caaacgtatc cgcttctaat
    33601 ccttcccatg gatttcgtgc tgcaaaaatc gaaattggtg ataatggtgt aataacacgt
    33661 ttcgcatttt caatgactga attgatattt aactgtgttg tcataccttt cacctcctat
    33721 aaatacttct tcaaataatt cggatgactt tctatcgctt tcgagcgtgc ttcacctaga
    33781 ttaactaacc acacgtacaa taccgcaaaa gccttagagt atcgatgccg cgccacccaa
    33841 atacttaata aactgccaaa gattaaaata acaacactaa tgatgacact cactgtaggc
    33901 ggcgttgtcg catgtgttgt tatattttgt aatacagcgt aaaaataatt atgtgtgatg
    33961 acgtagataa atgtcacgat tgcaatcaaa atcataccaa caagacgtgc catgcgtcct
    34021 ttactaaagg ctaccatttg attccaagat acaagtaatg accatcctag aatgagtgca
    34081 cttaacactt catatgcact tctgtcacta ctcatccaaa atagaaatgc cacgataata
    34141 gctaatacac gtcccatgac aatccagcca taagcgtctt tagcagatgc ttgttttgga
    34201 atattgaatc gcttcacgat agaacctgat tgtaaaaata atgttgcttt aaaaataccg
    34261 tgcaatatta aatgaataat cgctgctgaa tatacaccca atgcacattg aactaacata
    34321 aagcccattt gactcatcgt agagcccact aattggcgtt tatagtcaac ttgaactaag
    34381 ctaatacccg atcctaacaa tacagaaata ctagaaagga taagtaataa tgataacgca
    34441 aatccattat caaatatcgg cgcaaaacga gttagaataa caccacctgc attcacaatt
    34501 cctgcatgca taattgccga tactggcgtt ggtgccgtta cagattcaat caaccatcga
    34561 tgaaaaggaa attgtgctgc cggtatcatg acagctaata caagtagtac attcgtcaac
    34621 aatgaccatg tcggatgaac tatatgttgt ggtacccgcc actcgccagt cgcaatataa
    34681 atagttacaa ttgctccaac gaatgcaagc caaccacata aaaatgtcat gcttgataat
    34741 ttcgcagact cacgtggcac tttccaaaaa cgattaacgt tcatcagcaa tgttaaacat
    34801 aataatgtaa taccccagca gagtgccatc agtcttaagt cttcagacat ccatgctaaa
    34861 gatgcaaacg acgtaatcgc agtgaacaat ggaaagtaat gtctataatg atgatcacct
    34921 agtaaatatc gcattgaaaa cttttgaata ataaagccaa gcgccattac aaagccagct
    34981 aataaccaag ataaacgatc tattttaaat ggacctaaga catgttgacc atgaataccg
    35041 aaaaagccaa tgactgcaaa taatactggc atgactagta tgtataaatg taatttaata
    35101 tatctcattg gcataactgg tgctaaaaac aacaagccac ttatcaatgc aatgataagc
    35161 gcaataacaa acagtgaaaa tagcaattga aaacttaaca ctgcataacc tccttatttc
    35221 taatctctcg cataattgct tatgtataaa aataaaaacc tacaatagta gattctgtac
    35281 ataatggcag aaaatttact attgcaggtt tcagtttaac tagacactgc atcacggtac
    35341 gttgatatac cttgttgcag tgttctcttt aagcgtgctc ccatgcacat atgtatataa
    35401 aatgttactt ctgtctgttc aattcatctt cataaatatg ctttgcctag acgagaccta
    35461 acgtgttatt cgttttaaac ttataacata aaatataatt aaatttctgc ttcatgtcaa
    35521 attcatgagc ttaacctcta ttaaaccaat gattgtaaag attttgtaaa tgcacctgta
    35581 cagttaggca gtatttcccg tccttttaaa ataaaaaatt cgcagttatg atcataacaa
    35641 ttcaagttag gaaaaaaatc aattacgcac aagataacta tgtacaatga agttaactca
    35701 taagcaaagg aggtaatctt aatgggtatc atcgctggca tcattaaagt tatcaaaagc
    35761 ttaatcgaac aattcactgg taaataagat ttcataacaa acaaaggagg tctttcacat
    35821 gggtatcatt gcaggaatca ttaaattcat taaaggatta attgagaaat tcactggtaa
    35881 gtaagttata aaaatctcat agatatgaac atcttatttg aagggggcca ttcacatgga
    35941 attcgtagca aaattattca aattctttaa agatttactt ggtaaatttt taggtaacaa
    36001 ctaatctcaa acattaacga tcaacaactc atcactatgt taaatcaaca tacaggagga
    36061 caaaacgatg gctattgtag gtactatcat taaaatcatc aaagcaatta tcgacatttt
    36121 cgcaaaataa tttaagcgaa ttgaatactt aaaattctca ggccactata ccaataggga
    36181 tggtggcttt gctttgtgtt gatttattga tgtgaggtga gtcttgttag tttgttgcaa
    36241 ataaatggtc ttggtgtttt ttgtatagga cgttcttagt gggacatacg gaatattcgt
    36301 gatctttgta gtctgacgcg ttatattttt gtggcgtgtt ttatgtttga tactcgagtt
    36361 ctgagacatt catgatttgg catgcgaaat cttaatgatt ttcatgatct agcgcaagat
    36421 atattggcca cgtgcggaat tgcgttgcac gtttagactg aaacactcgt gtgaccgtaa
    36481 gtgttaatag tacattgata gctgcattta cttcactcat ttttatgact gttaaacaat
    36541 gattgtacct tcaattaaca gttggtacga tggttttgcc atttttcatc aacgtaaata
    36601 taaaaaggac taagacacat acatgtccta gccctatgga taaaatgcaa atttctgctt
    36661 tatcaaaact atcacacttt agatagattg aaaacaaaaa gatcctaaga acaccttaac
    36721 tttttattaa ttgtcataaa ttgcaaacaa ttaagccaca attcaaaaat gattatactt
    36781 cattcaactt atcgtgctgg tctaatttgc cattgatatg gatcttcaaa ttgttgccaa
    36841 tctgcatcaa tttcttgcgc attgactaag catgcgtcga gttcttttgt taatttttct
    36901 tcatctaatt ctgtaccaat aatgacaaat tgtgtatgac gatcgccata ttctggatcc
    36961 cattcagctg cgacatcttg acgttctgct aatatttgtg tttgttgcgc ttcagacata
    37021 ctagccaccc aatatgtaac tggatgaata ttgcaagatg accctgcttg agataataaa
    37081 catgctacgt gattgtattg tgctagccat acgatacctt ttgatcgaac gacattattt
    37141 ggcatgcttt ctaaccaatc attgaacctt ttagcatgga aaggtagacg acgtttatat
    37201 acaaacgatg atataccata ttcttctgtt tcaggtgtat gcgatgcatg cccaccagac
    37261 tcaagttctt tgatccatcc tgctgactcg ctcgcttttt caaaatcaaa acgctgcgta
    37321 ttcaagactt cttttaaatc tacttcagaa tttgttgtct taataatttt agcagtcggt
    37381 tgcaatgcgc ttaacatttt ttctaacttc gctagttctt cttcactaat taaatcaatt
    37441 ttattaataa tcaatacatc acaaaattca acttggtcaa ttaataaatc agcaatcgaa
    37501 cgctcatctg tttcgtcaac gctttgatca cgatccatca ataaatcttc tgagttgatg
    37561 tcatgtacga agcggttagc atccacaact gtaaccattg tatctaaacg gcaaatcgct
    37621 gtaagatcaa tgccaagttc atcatcaata tatgagaaag tttgtgcaac aggtactggc
    37681 tctgaaatcc ctgttgactc aataacaatt tgatcgatgc cacctttttt cactaaacgc
    37741 tcaacttctt ttaataaatc gtctctaagt gtacaacaga tacaaccatt agaaagttcg
    37801 actaattttt catctgtacg cgatagtccc ccaccatctg cgacaagatc tttatcgata
    37861 tttacttcac tcatatcatt tacaattacc gcgatacgtc gaccttctcg attttgtaaa
    37921 atatgattta acaacgttgt cttccccgag cctaaataac cacttaatac cgtaactgga
    37981 attttagcca tatatatacc ctcacttcaa tttatttgta aataggaata attccgtttt
    38041 acattatata ggagcgtttc ctctttcgca atcttcgata ataaaaaaat agtatactta
    38101 attaaattat tgagcgcttt actttataat ggagacaaag atatatctca cgaaagagaa
    38161 tcgaggtgta taaacatgtt atttgtcatt ttagttttat atgttactgg tattgcattt
    38221 attctactca gtgtttttgg ttcaaagact gaaggattat ctacgaaaca tactttatat
    38281 accattggca gtgctattat aacgattgct attttcattt caattggcta tgccattcaa
    38341 tacttaactg cagcgcttta tggtttgtaa ggtgaaggtg atgagtaacg ggtagttcgg
    38401 gagaggttaa cttgcgttga ttttgataaa gtgatcatag cttttagtac ttgaggattt
    38461 ttattgttgc tgttacgaat gtggtcatgt ttaatgcggg acagtaattt aagttgtttt
    38521 tttacaattg agagtgtgat atttcgattc ggttcgaatt actttacatg ggaataatat
    38581 aaattaaaaa gaagcggcct agtgtcagtt gtgaatatac tgaacattgg tcgctttatt
    38641 tagtagtatg atatgtagtt tagctattaa tttttttcag gtcatcctta atgctgtcta
    38701 tctcagacat ggcactttta acccaatctc cttgagctgc acctttaaaa ttagctttaa
    38761 aagcttcgca atgttgcgcc atttgttcaa ttaatacttt ttcttcacct tttaatccgt
    38821 tttcaatatc tttgtattta tgcttatgtt caggtgcaat aactgtgcga atattttctt
    38881 tttgcgcttc cattttagat atgagattaa gtgtttctac tgtagtactt atatctggca
    38941 ttcttaaggt catatctggt tctattagag tcatttaatc tcctccaaat tatcagtcac
    39001 ttagcttatc taactgcttt tcataagact tttttaagtc ttctttatat tcttctaatt
    39061 tccattcttg ctttctaatt atctcattga tttcttgctc atacgcttct atatttctcg
    39121 tcattttcct ttgggcatct tcactataat tcatttcgtg cttcaaatat tgaaaaacat
    39181 cataactacg ctcattttct tttcgagttc tatgcctaag ttcatttaaa ttttgcagtt
    39241 cattctctat acgttttttc tcagattcat atgattcttc taattcattt ttattattaa
    39301 tttgattaaa catcatagta atccacctat ttgtgatgca agcacttgat ctttatcaac
    39361 gatttcatta atactgagtc taactctcat aatataattt gatacagaag accctatcgt
    39421 tgaaagttgt ctttcttttg cagatatcat ttgttcaggt tctcttacca tactactttc
    39481 attcacttga ccttcatcta aagcattgag aactccattt acactcaaat cttcacctac
    39541 agcttttcca gctttttgag cgtcttccca attttttcca aatttctttt tcttttcatt
    39601 atacattttt ttgatttgat taatttcatc gtctatcagt tgactgaatg actgcgcaat
    39661 tgttaaagct gttaaacttt ctaaaacttt ttgctgcgaa gaagataatc ctcctccatt
    39721 tgtagtcatc atatttgctc taagtaattc tatactagct aatttagaga tagcattatt
    39781 tgaattcttt acaaatgact tattattttc ttctgcataa ccttgtagtt ttttaagttc
    39841 tttttttata gctttttgtt cttcttcggt cagaaagcct tccatttcat gacctttacc
    39901 atttttaaag actttatcat taccgaaaaa aacataatgc ttatatttct tcagattttc
    39961 tgtcaatgca tcattttctg caacaaacct agtaatatta cctttataat ttttatataa
    40021 ttctaataaa cgttttccat ctggggaatt aggattcaaa ctagttatag aaataggagc
    40081 tggattataa accacaatgt tcggaatacc attactcatt cctagaacta ccgcatctct
    40141 tccacctagt gaatgtccag taataaaatc aatgtcatac ttacttttta ttttatttat
    40201 aaattcttgt gtattcgcat atctatagtt ttgatcagat gcaggagaat ataatatttt
    40261 aagatctgca tatccatctt taactgtttc caaagcattg gtaacatttt gtcttgaaaa
    40321 ttcaccttct tttaactttt taaaggcttc gtcttgtaaa ttagtcccag tcatcccgag
    40381 agttactttg cctgtatctt tatttaaaaa agcagaagtt gttactccag taagagaatc
    40441 agtgtaacta tcaacatatt caagattaga agggaatttt ttcatttttt tcaaatcatt
    40501 aaattgatta atcacgtctc tttttgatag accattatta ttagcattct caacttcgta
    40561 tgacgctttc gaaatagcac ttgtagactc agtattttga ttaattgctt ttaaatctat
    40621 tttatacttc ctactcaaca ttctcacctt cagacggtcc aaaattcaaa taatctctta
    40681 atgttgtctc ttgaccttta tcttttgaaa atttatattc tattttttta tatcctactg
    40741 agcttccttt tatatcacca tctatatata attttagatt tggagagtta ttagttgtaa
    40801 ttggataaat ttctctaagt ttttttacat ttttatcact attgttcatt ttatattgtg
    40861 cttcatagct cggtacgttt tcattagttg ttatatttcc atcttgataa ttttttaaat
    40921 ctttaaaatc agcatactga ctaaaaaatt taaaattttc aattttttgt ttaagttttt
    40981 tgtcttctac attatccaaa agaacaatct tattattttt tagttcaaca cgatattttt
    41041 tctcattatg atttttgcta atatcatcat aaactttatt tacaaaataa taacctgttg
    41101 cctttttggc atttctatta agatataaca ccatgccttc atcatctaat actcctggtt
    41161 tgttactttt tgaaaaacct gtaagtatag tccacgtacc tttatcgcct tttttaaact
    41221 caccatctcg atatccttct ttgtcgtata aatcctcgag attcttaatt ggatacatat
    41281 ctaacgtttt cgcaaaactc tttttgattt gttcttcttt tgaatctgtt ttattcgttt
    41341 gttcctcttt tttctgttca tctttcatat ttccacatcc cccaataaaa atgattaaaa
    41401 gtaatacact catgtacaaa gcaatttttt ttatatactc catcatttca catctctctg
    41461 ttttaatttt ataaacattt gaatatttca tacaacttat taaaatagtg attattcaac
    41521 ttttatgtta tcaa
//
LOCUS       DAMQWL010000007        40401 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.007, whole genome shotgun sequence.
ACCESSION   DAMQWL010000007 DAMQWL010000000
VERSION     DAMQWL010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 40401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40401
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.007"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..151
                     /locus_tag="PF788_000404"
     CDS             <1..151
                     /locus_tag="PF788_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302693.1"
                     /translation="VVNGTYYFHGHIVPGWQGVKKMFDTAEELETYIKQHGLEYEEQK
                     QLTLF"
     gene            166..408
                     /locus_tag="PF788_000405"
     CDS             166..408
                     /locus_tag="PF788_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016170782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1024 family protein"
                     /protein_id="HDG6302694.1"
                     /translation="MNNREQIEQSIISASAYNGNDTEGLLKEVEDVYKKAQAFDEILE
                     GLPNAMQDALKEDIGLDEAVGIMTGQVVYKYEESEE"
     gene            408..614
                     /locus_tag="PF788_000406"
     CDS             408..614
                     /locus_tag="PF788_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000097971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lar family restriction alleviation protein"
                     /protein_id="HDG6302695.1"
                     /translation="MSSPKIKPCPFCGGLADIRYSFDTLLIECTNKNCKLQPSTWSHV
                     HTNNAEKLIKIWNKRKDLEEQEND"
     gene            607..1137
                     /locus_tag="PF788_000407"
     CDS             607..1137
                     /locus_tag="PF788_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001669788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HDG6302696.1"
                     /translation="MTNTLTVDQLQELLQIQKEFDDRIPTLNLQDSKVAYVVEFFEWF
                     NTLETFKNWKKKPGKPLDVQLDELADMLAFGLSIANQQSDDMEEILDYVEDGIFTDCI
                     DSVEIDFNDSDIVDEFMSDIDELYNGWFSINLFLPFAIAIQYYTIDKLISAYKKKMER
                     NHARQDGTADTEKGYV"
     gene            1174..1380
                     /locus_tag="PF788_000408"
     CDS             1174..1380
                     /locus_tag="PF788_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1381 domain-containing protein"
                     /protein_id="HDG6302697.1"
                     /translation="MTQYLVTTFKDSTGRKHTHITKAKSNQSYTVVEAESKEEAKEKY
                     EAQVKRDAVIKLGQLFENIRECGK"
     gene            1377..1580
                     /locus_tag="PF788_000409"
     CDS             1377..1580
                     /locus_tag="PF788_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001072796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302698.1"
                     /translation="MNQLRILLHDGSSLILHEDELFNEIVFVLDDFRNDDDYLTIEKD
                     YGRELVLNKGYIVGINVEEADDD"
     gene            1573..1809
                     /locus_tag="PF788_000410"
     CDS             1573..1809
                     /locus_tag="PF788_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000608273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302699.1"
                     /translation="MINIPKMKFPKKYTEIIKKYKNKTLEEKAKIEDDFIKEINDKDS
                     EFYSPMMANMNEHELRAMLRMMPSLIDTGDDNDD"
     gene            1799..2185
                     /locus_tag="PF788_000411"
     CDS             1799..2185
                     /locus_tag="PF788_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015978254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302700.1"
                     /translation="MMIKKLKNMDWFDIFIAGILRLFGVIALMLVVISPIYTVASYQN
                     KEVHQGTITDKYNKRQDKEDKFYIVLDNKQVIENSDLLFKKKFDSADIQARLKVGDKV
                     EVKTIGYRIHFLNLYPVLYEVKKVDK"
     gene            2185..2358
                     /locus_tag="PF788_000412"
     CDS             2185..2358
                     /locus_tag="PF788_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000595244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator RinB"
                     /protein_id="HDG6302701.1"
                     /translation="MIKQILRLLFLLAMYELGKYVTEQVYIMMTANDDVEAPSDFAKL
                     SDQSDLMRAEVSE"
     gene            2359..2760
                     /locus_tag="PF788_000413"
     CDS             2359..2760
                     /locus_tag="PF788_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000286967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302702.1"
                     /translation="MYSKESIVNMIGTHKMKCNVLADVIPEYDSNSIAQYGIQATLPK
                     PQGENSSKVEDVVVRLERANKRYAQMLKEVEFINQSQQRLGHVDFCFLELLKKGYNRD
                     AIIKKMPNSKLNRNNFLARRDELAEKIYLLQ"
     gene            3111..3605
                     /locus_tag="PF788_000414"
     CDS             3111..3605
                     /locus_tag="PF788_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000594087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDG6302703.1"
                     /translation="MIKLTPKQEKFVLGLIEGKSQRKAYIDAGYSTKGKSGEYLDKEA
                     STLFKNRKVSGRYEKLRQEVAEQSKWTRQKAFEEYEWLKNVAKNDIEIEGVKKATADA
                     FLASLDGMNRMTLGNEVLANKKIETEIKMLEKKIEQIDKGDSGTEDKIKQLHDAITEV
                     IVNE"
     gene            3598..4821
                     /locus_tag="PF788_000415"
     CDS             3598..4821
                     /locus_tag="PF788_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001037586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HDG6302704.1"
                     /translation="MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDL
                     FLRELMRVRKIADEEGIETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFML
                     FGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDT
                     NPDHPEHWLLKDYIENTDPKAGILSYQFKLDDNNFLNDRYKESIKASTPSGMFYERNI
                     NGMWVSGDGVVYADFDLNENTIKADELNDIPIKEYFAGVDWGYEHYGSIVLIGRGIDG
                     NFYFIEEHAHQFKFIDDWVVIAKDIVCRYGNINFYCDTARPEYITEFRRHRLRAINAD
                     KSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRY
                     AIYTHTKPERLRRVK"
     gene            4818..6242
                     /locus_tag="PF788_000416"
     CDS             4818..6242
                     /locus_tag="PF788_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016528746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDG6302705.1"
                     /translation="MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTH
                     IDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTY
                     DLDENAEKNEKLKKFITNFVIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKN
                     IDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNTYYYVFRGEGIDALQE
                     VGRYEHLFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLR
                     GMGMSEEMIQETQKSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVN
                     FNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLNDD
                     SYLNLIFKFTRNIPVNKLEESQVLINLKGQVSERTRLGQSQLVDDVDYELDEMEKESL
                     EFNDKLPDIYEGDANDKSQNNQSE"
     gene            6211..7161
                     /locus_tag="PF788_000417"
     CDS             6211..7161
                     /locus_tag="PF788_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDG6302706.1"
                     /translation="MTNPKITNQNDIDEYIEGLISKAEKPIEQLFANRLKEIKQIIAD
                     MFEKYQSDDVYVTWTEFNKYNRLNKELTRIGTMLTDDYRQVAKMIQKSQEDAYIEKFL
                     MSLYLYEMASQTSMQFDVPSKEVIKSAIEQPIEFIRLMPTLQKHRDEVLKKIRMHITQ
                     GIMSGEGYSKIAKAIRDDIGMSKAQSLRVARTEAGRAMSQAGLDSAMVAKDNGLKMKK
                     RWHATKDTRTRDTHRHLDGESVEIDQNFQSSGCVGQAPKLFIGVNSAKENINCRCKLL
                     YYIDKDELPTVMRVRNDDGENEVIPFMNYREWEKHKRKKK"
     gene            7257..7841
                     /locus_tag="PF788_000418"
     CDS             7257..7841
                     /locus_tag="PF788_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001019221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4355 domain-containing protein"
                     /protein_id="HDG6302707.1"
                     /translation="MNIEEVKSFFEEHKDDKEVKDYLNGLKTVSVDDVKGFLDTEEGK
                     RFIQPELDRYHSKGLESWKEKNLENLIEQEVRKRNPEQSEEQKRISALEKELEKRDAE
                     AKREKLRSNALGKAQELNLPTSLVDRFLGDSDEDTEQNLKALKETFDKYVQEGVESKF
                     KSSGRDVKESQNQDLDPSNVKSIEEMAKEINIRK"
     gene            7858..8772
                     /locus_tag="PF788_000419"
     CDS             7858..8772
                     /locus_tag="PF788_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000235170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDG6302708.1"
                     /translation="MTTPTYTPGNVILSDFKNGVIPAEQGTLIMKDIMANSAIMKLAK
                     NEPMTAQKKKFTYLAKGVGAYWVSETERIQTSKPEYAQAEMEAKKIGVIIPLSKEFLK
                     WTAKDFFNEVKPLIAEAFYKAFDQAVIFGTKSPYNTSTSGKPLVEGAEEKGNVVTDTN
                     NLYVDLSALMATIEDEELDPNGVLTTRSFRSKMRNALDANDRPLFDANGNEIMGLPLS
                     YTGADVYDKKKSLALMGDWDYARYGILQGIEYAISEDATLTTLQASDASGQPVSLFER
                     DMFALRATMHIAYMNVKPEAFATLKPTE"
     gene            8784..8927
                     /locus_tag="PF788_000420"
     CDS             8784..8927
                     /locus_tag="PF788_000420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302709.1"
                     /translation="MANPAEEIKVKKDNMTITVTKKAFDSYYSLVGYKEVKSRRTTSD
                     KSE"
     gene            8933..9283
                     /locus_tag="PF788_000421"
     CDS             8933..9283
                     /locus_tag="PF788_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016528745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail adapter protein"
                     /protein_id="HDG6302710.1"
                     /translation="MTLYEDVKLLLKKNGVEVKSDEEEIFKMEVDGILEDVRDITNND
                     FMKDGQVIYPYSIKKYVADVLEYYQRPEVKKNLKSRSMGTVSYTYNDGVPDYISGVLN
                     RYKRAKFHPFKPIR"
     gene            9295..9630
                     /locus_tag="PF788_000422"
     CDS             9295..9630
                     /locus_tag="PF788_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001652287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HDG6302711.1"
                     /translation="MFNPYDEFPHTISIGSIKKVGEYPIIQERFVNDKTIKGFMDTPT
                     TSEQLKFHQMSQEYDRNLYVPYDLPISKNNLFEYEGRIFSIEGDSVDQGGQHEIKLLR
                     LKQVPYGKG"
     gene            9617..10030
                     /locus_tag="PF788_000423"
     CDS             9617..10030
                     /locus_tag="PF788_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002480803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDG6302712.1"
                     /translation="MAKVKYGNWDLVKELEEFEEETIKWAKKGIAKTINKIYNTAVAL
                     APVDMGFLKESIDFMYKDGGLTGIISVGAEYAIYVEYGTGIYATGPGGSRAKKLPWSY
                     EDEDGEWHTTYGSPAQPFWNPAIDEGRAFFNKYFS"
     gene            10043..10468
                     /locus_tag="PF788_000424"
     CDS             10043..10468
                     /locus_tag="PF788_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000270192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3168 domain-containing protein"
                     /protein_id="HDG6302713.1"
                     /translation="MWVSVEPELTNQIYKRLISDPNINKLVDDRVFDVVQDDAVYPYI
                     VVGESNVTNNESSATMRETVGIVIHVYSQFATQYEAKLILNAIGYVLNRPIEIENYEF
                     QFSRIDSQAVFPDIDRFTKHGTIRLLFKYRHKKKNEGVY"
     gene            10469..11026
                     /locus_tag="PF788_000425"
     CDS             10469..11026
                     /locus_tag="PF788_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000057584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDG6302714.1"
                     /translation="MAQKNYLAVVRPAETDLDLVDALLLADLQEGGHTIENDLAEIVR
                     GGKTDYSSNAMSESFKLTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERNKRADGKHHG
                     MFGYVVPESFEMSFDDESDKIELSLKVKWNTAEGAEDNLPKEWFEAAGAPTVEYEKFG
                     EKVGTFENQKKASVVSDSHTEDHSM"
     gene            11093..11599
                     /locus_tag="PF788_000426"
     CDS             11093..11599
                     /locus_tag="PF788_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000134337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302715.1"
                     /translation="MTEFNPITTLKINDGEKDYEVEAKVTFAFDRKAEKFSEDSEDGR
                     KGAMPGFNVIFNGLLESRNKAILQFWECATAYLKNPPTREQLEKAIDDFITENEDTLP
                     LLQGALDKLNNSGFFKRESRSYWMTLNKAPNMAKSEDKEMTKAGIEMMKENYKEIMGA
                     EPYTITQK"
     gene            11644..11928
                     /locus_tag="PF788_000427"
     CDS             11644..11928
                     /locus_tag="PF788_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000880587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302716.1"
                     /translation="MLALTPAEWRDWLIGGQDRYLDQRQLLIEQAQANGLVQASKRLT
                     SMIRDIEKQRYEIREPGSYARVQKARLEEEKRRRELFKEGTRKFLESKGG"
     gene            11932..14817
                     /locus_tag="PF788_000428"
     CDS             11932..14817
                     /locus_tag="PF788_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase"
                     /protein_id="HDG6302717.1"
                     /translation="MDTHFMAKIMANIRDFQSNVRKAQRLAKTSVPNEIETDVKADIS
                     RFQRALQRAKAMAQKWREHNVKIDGNNSPLKRAIASAKTMLATLHNKTIKVNFDTRGM
                     TKTQILTKALNQSLTDYSEKMDALATKIRTFGTIFAQQVKGLMIASIQALIPVIAGLV
                     PAIMAVLNAVGVLGGGVLGLVGAFSVAGLGVVGFGAMAISALKMVEDGTLAVTKEVQN
                     FRDASDQLKTTWRDIVKENQASIFNAMSAGIRGVTSAMSQLKPFLSEVSMLVEANARK
                     FEDWVKHSETTKKAFEALNSIGGAIFGDLLNAAGRFGDGLINIFTQLMPLFKFVSQGL
                     QNMSIAFQNWANSVAGQNAIKAFIDYTTTNLPKIGQIFGNVFAGIGNLMIAFAQNSSN
                     IFDWLVKLTSQFRAWSEQVGQSQGFKDFISYVQENGPTIMQLIGNIVKALVAFGTAMA
                     PIASKLLDFITNLAGFIAKLFEAHPAVAQIIGVIGILGGVFWALMAPIAAVSSVLSNV
                     FSMTLLNVVKRILDLTRITGVVSKAFGLLTGAFTSISWPILAVVAVIGVFIGILVYLW
                     KTNEKFRKTITEAWNGIKTAVSGAIQGVVDWLTQLWGKIQSTLQPIMPILQMLGQIFM
                     QVLGVLVIGIITNVMNIIQGLWTLITIAFQAIGTVISVAVQIIVGLFTALIQLLTGDF
                     SGAWETIKTTVTNVLDTIWQYMQSVWESIIGFLTGVMNRTLSMFGTSWSQIWSTITNF
                     VSSIWNTVTSWFSRVASSVAEKMGQALNFIIIKGSEWVSNIWNTVTSFASKVADGFKR
                     VVSNVGDGMSDALGKIKSFFGDFLNAGAELIGKVAEGVANAAHKVVSAVGDAISSAWD
                     SVTSFVSGHGGGSGLGKGLAVSQAKVMATDFGSAFNKELSSTLTDSIVDPVSTSIDRH
                     MTSDVQHSLKENNRPIVNVTIRNEGDLDLIKSRIDDMNAIDGSFNLL"
     gene            14832..15773
                     /locus_tag="PF788_000429"
     CDS             14832..15773
                     /locus_tag="PF788_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001604155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HDG6302718.1"
                     /translation="MIAHDIEVIRNGSQYRVSDNPFTYNHLEVVEYNVTGAGYHRNYS
                     DIEGIDGRFHNYAKEELKKVELKLRYKVPKIAYASHLKSDVQALFAGRFYLRELATPD
                     NSIKYEHILDIPKDKQAFELDYVDGRQLFVGLVSEVSFNTTQISGEFSLSFETTELPY
                     FESVGFSTDLESDNDPEKWSVPDRLPTNEGDKRRQMTFYNTNSGEVYYNGDVPLTQFN
                     QFNVVEIELAEDVKANDKDGFTFYTDKGNISVIKEVDLKAGDKIIFDGKHTYRGYLNI
                     DSFNKTLEQPVLYPGWNRFKSNKVMKQITFRHKLYFR"
     gene            15784..17670
                     /locus_tag="PF788_000430"
     CDS             15784..17670
                     /locus_tag="PF788_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001122001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDG6302719.1"
                     /translation="MPILLKSLQGVGHAINVSTKVSKKLNEDSSLDLTIIENASTFDA
                     IGAITKMWTITHVEGEDDFNEYVIVILDKSTIGEKIRLDIKARQKELDDLNNSRIYQE
                     YNESFTGVEFFNTVFKGTGYKYVLHPKVDASKFEGLGKGDTRLEIFKKGLERYHLEYE
                     YDAKTKTFHLYDELSKFANYYIKAGVNADNVKIQEDASKCYTFIKGYGDFDGQQTFAE
                     AGLQIEFTHPLAQLIGKREAPPLVDGRIKKEDSLKKAMELVIKKSVTASISLDFVALR
                     EHFPEANPKIGDVVRVVDSAIGYNDLVRIVEITTHRDAYNNITKQDVVLGDFTRRNRY
                     NKAVHDAANYVKSVKSTKSDPSKELKALNAKVNASLSINNELVKQNEKINAKVDKMNT
                     KTVTTANGTIMYDFTSQSSIRNIKSIGTIGDSVARGSHAKTNFTEMLGKKLKAKTTNL
                     ARGGATMATVPIGKEAVENSIYRQAEQIRGDLIILQGTDDDWLHGYWSGVPIGTDKTD
                     TKTFYGAFCSAIEVIRKNNPDSKILVMTATRQCPMSGTTIRRKDTDKNKLGLTLEDYV
                     NAQILACSELDVPVFDAYHTDYFKPYNPAFRKASMEDGLHPNEKGHEVIMYELIKDYY
                     SFYD"
     gene            17683..19581
                     /locus_tag="PF788_000431"
     CDS             17683..19581
                     /locus_tag="PF788_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302720.1"
                     /translation="MAYGLITSLHSMTGRKIVAQHEYNYRLLDEGMSKLEKMFIYHQK
                     EEIYAHSAKQIKYLNDSVEDYLTYLNGRFSNMVLGHNGDGINEVKDARVDNTGYGHKT
                     LQDRLYHDYSTLDTFTKKVEKAVDEHYKEYRATEYRFEPKEQEPEFITDLSPYTNAVM
                     QSFWVDPRTKIIYMTQARPGNHYMLSRLKPNGQFIDRLLVKNGGHGTHNAYRYIDGEL
                     WIYSAVLDGNKNNKFVRFKYRTGEITYGNEMQDIMPNVFNDRYTSAIYNPVENLMIFR
                     REYKASERQLKNSLNFVEVRSADDIDKGIDKVLYQMDIPMEYTSDTQPMQGITYDAGI
                     LYWYTGDSNTANPNYLQGFDIKTKELLFKRRIDIGGVNNNFKGDFQEAEGLDMYYDLE
                     TGRKALLIGVTIGPGNNRHHSIYSIGQRGVNQFLKNIAPQVSMTDSGGRVKPLPIQNP
                     AYLSDITEVGHYYIYTQDTQNALDFPLPKAFRDAGWFFDVLPGHYNGALRQVLTRNST
                     GRNMLKFERVIDIFNKKNNGSWNFNPQSAGYWEHIPKSITKLSDLKIVGLDFYITTEE
                     SKRFSDFPKDYKGIAGWVLEVKSNTPGNTTQVLRRNNFASAHQFFVRNFGTGGNSGWS
                     IIEGKEVE"
     gene            19581..21404
                     /locus_tag="PF788_000432"
     CDS             19581..21404
                     /locus_tag="PF788_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HDG6302721.1"
                     /translation="MLVDNFSKDDNLIELKTTSQYNPVIDTNISFYESDRGTGVLNFA
                     VTKNNRPLSISSEHVKTSIVLKTDDYNVDRGAYISDELTVVDAINGRLQYVIPNEFLK
                     HSGKVHAQAFFTQHGSNNVVVERQFSFDIENDLVSGFDGITKLVYIKSIQDTIEAVGK
                     DFNQLKQNMANTQTLIAKVNDSATKGIQQIEIKQNEAIQAITATQTSATQAVTAEFNK
                     IVEKEQTIFARVNEVEQQINGADLVKGNSTVNWQKSKITDDYGKAIESSEQSIDSVLS
                     TVNTSRIIHITNATDAPEKTDIGTLEKPGQDGVDDGSSFDESTYTSSKSGVLVVYVVD
                     NNTARATWYPDDSNDEYTKYKIYGTWYPFYKKNDGNLTKQFVEEISNNALNQAKQYVD
                     GKFQSTSWQQHKLTEHNGQSIQKNLYNAKGNLEALGAGNYYVTSVPDLPGIVESYEGY
                     LSVFVKDDANKLFNFTPSNSKKVYTRSITNGRLDSQWATPNEHKTAVLFDGAANGVGT
                     RINLTEAYTNYAILFISGTYPGGVIEAFSLTSIPNAIQLSKTNVVDSDGNGGGSYECL
                     ITKESGTTLKIDNDVYLDLGSKTGSGANANRVTINKIVGWK"
     gene            21404..21781
                     /locus_tag="PF788_000433"
     CDS             21404..21781
                     /locus_tag="PF788_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2977 domain-containing protein"
                     /protein_id="HDG6302722.1"
                     /translation="MKITVNDKNEVIGYVNTGGLRNSLDVDDNNVPIKFKEEFEPRKF
                     VFTNGEIKYNSNFEKEDVPNASSQQSESDLSDEELRGMVASMQMQVTQVNILAMELKQ
                     QNAMLTQQLTELKAGKTNTEGDV"
     gene            21791..21964
                     /locus_tag="PF788_000434"
     CDS             21791..21964
                     /locus_tag="PF788_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XkdX family protein"
                     /protein_id="HDG6302723.1"
                     /translation="MKMIYPTFKDIKTFYVWGCYKNDQIKWYVDMGVIDKEEYALITG
                     EKYPETKDEKSQV"
     gene            22005..22304
                     /locus_tag="PF788_000435"
     CDS             22005..22304
                     /locus_tag="PF788_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2951 domain-containing protein"
                     /protein_id="HDG6302724.1"
                     /translation="MFGFTKRHEQDWRLTRLEENDKTMFEKFDRIEDSLRTQEKIYDK
                     LDRNFEELRRDKEEDEKNKEKNAKNIRDIKMWILGLIGTILSTFVIALLKTIFGI"
     gene            22441..24315
                     /locus_tag="PF788_000436"
     CDS             22441..24315
                     /locus_tag="PF788_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016187665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HDG6302725.1"
                     /translation="MGLPNPKTRKPTASEVVEWAKSNIGKRINIDNYRGSQCWDTPNF
                     IFKRYWGFVTWGNAKDMANYRYPKGFRFYRYSSGFVPEPGDIAVWHPGNGIGSDGHTA
                     IVVGPSNKSYFYSVDQNWVNSNSWTGSPGSLVRHPYVSVTGFVRPPYSKDTSKPSSTD
                     TSSASKANDSTITGEAKKPQFKEVKTVKYTAYSNVLDREEHFIDHIVVMGDERSDIQG
                     LYIKESMHMRSVDELYTQRNKFISDYEIPHLYVDREATWLARPTNFDDPRHPNWLVIE
                     VCGGRTDSKRQFLMNQIQALIRGVWLLSGTDKELSETTLKVDPNIWRSMKDLINYDLI
                     KQGIPDDAKYEQVKKKMLETYIKRDILKRENIKEVTTKTTIRISDKTSVDSASTRGPT
                     ASDEKPSIVTEKSPFTFQQALDRQMSRGNPKKSHTWGWANATRAQTSSAMNVKRIWES
                     NTQCYQMLNLGKYQGVSVSALNKILKGKGTLDGQGKAFAEACKKNNINEIYLIAHAFL
                     ESGYGTSNFANGKDGVYNYFGIGAYDNNPNYAMTFARNKGWTSPAKAIMGGASFVRKD
                     YINKGQNTLYRIRWNPKNPATHQYATAIEWCQHQASTIAKLYKQIGLKGIYFIRDKYK
                     "
     gene            24328..25566
                     /locus_tag="PF788_000437"
     CDS             24328..25566
                     /locus_tag="PF788_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HDG6302726.1"
                     /translation="MYKIKDVETRIKNDGVDLGDIGCRFYTEDENTASIRIGINDKQG
                     RIDLKAHGLTPRLHLFMEDGSIFKNEPLIIDDVVKGFLTYKIPKKVIKHAGYVRCKLF
                     LEKEEEKIHVANFSFNIVDSGIESAVAKEIDVKLVDDAITRILKDNATDLLSKDFKEK
                     IDKDVISYIEKNESRFKGAKGDKGEPGQPGAKGEAGKKGEQGAPGKNGTVVSINPDTK
                     MWQIDGKDTDIKAEPELLDKINIANVEGLEDKLQEVEKIKDTTLNDSKTYTDSKIAEL
                     VDSAPESMNTLRELAEAIQNNSISESVLQQIGSKVSTEDFERFKQSLNSLYADKNHSH
                     TIKQIEGLENALSKKSDINHSHDERYLLSSNAFTKEEADKLYQPIGSSQPSLNIWTGS
                     ETEYNYLYQKDPNTLYLIKG"
     gene            25571..25966
                     /locus_tag="PF788_000438"
     CDS             25571..25966
                     /locus_tag="PF788_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302727.1"
                     /translation="MEGNFKNVKKLIYEGEEYTKVYAGNIQVWKKPSSFVIKPLPKNK
                     YPDSIEESTAKWTINGVEPNKSYQVIIENVRSGIMRISQTNLGSSELGISGVNSGVAS
                     KNINFSNPSGMLYVTISDVYSGSPTLTIE"
     gene            26022..26459
                     /locus_tag="PF788_000439"
     CDS             26022..26459
                     /locus_tag="PF788_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HDG6302728.1"
                     /translation="MDINWKLRFKNKAVLTGLVGALLLFIKQVTDLFGLDLSTQLNQA
                     SAIIGAILTLLTGIGVITDPTSKGVSDSSIAQTYQAPRDSNKEEQQVTWKSSQDSSLT
                     PELSTKAPKEYDTSQPFTDASNDVGFDVNEYHHGGGDNASKIN"
     gene            26440..27885
                     /locus_tag="PF788_000440"
     CDS             26440..27885
                     /locus_tag="PF788_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDG6302729.1"
                     /translation="MQAKLTKKDFIEWLKTSEGKQFNVDLWYGFQCFDYANAGWKVLF
                     GLLLKGLGAKDIPFANNFDGLATVYQNTPDFLAQPGDMVVFGSNYGAGYGHVAWVIEA
                     TLDYIIVYEQNWLGGGWTDGIEQPGWGWEKVTRRQHAYDFPMWFIRPNFKSEITPRSV
                     QSPTQAPKKETAIPQPKAVELKIIKDVVKGYDLPKRGGNPKGIVIHNDAGSKGATAEA
                     YRNGLVNAPLSRLEAGIAHSYVSGNTVWQALDESQVGWHTANQLGNKYYYGIEVCQSM
                     GADNATFLKNEQATFQECARLLKKWGLPANRNTIRLHNEFTSTSCPHRSSVLHTGFDP
                     VTRGLLPEDKRLQLKDYFIKQIRAYMDGKIPVATVSNESSASSNTVKPVASAWKRNKY
                     GTYYMEESARFTNGNQPITVRKVGPFLSCPVGYQFQPGGYCDYTEVMLQDGHVWVGYT
                     WEGQRYYLPIRTWNGSAPPNQILGDLWGEIS"
     gene            complement(28529..28609)
                     /locus_tag="PF788_000441"
     CDS             complement(28529..28609)
                     /locus_tag="PF788_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302730.1"
                     /translation="MFLIFSVLQQNGIKNGIICSYFSFTY"
     gene            28956..29117
                     /locus_tag="PF788_000442"
     CDS             28956..29117
                     /locus_tag="PF788_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302731.1"
                     /translation="MNEQQTIEQIKARLNKFIEDIDHVNPDEVRVEDIDEWIGLLDQL
                     EEKVKLVSK"
     gene            29248..29763
                     /locus_tag="PF788_000443"
     CDS             29248..29763
                     /locus_tag="PF788_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HDG6302732.1"
                     /translation="MTKKVAIILANEFEDIEYSSPKEALENAGFNTVVIGDTANSEVV
                     GKHGEKVTVDVGIAEAKPEDYDALLIPGGFSPDHLRGDTEGRYGTFAKYFTKNDVPTF
                     AICHGPQILIDTDDLKGRTLTAVLNVRKDLSNAGAHVVDESVVVDNNIVTSRVPDDLD
                     DFNREIVKQLQ"
     gene            30104..30913
                     /gene="sgtB"
                     /locus_tag="PF788_000444"
     CDS             30104..30913
                     /gene="sgtB"
                     /locus_tag="PF788_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional peptidoglycan glycosyltransferase
                     SgtB"
                     /protein_id="HDG6302733.1"
                     /translation="MKRSDRYSNSNEHFEHMKHEPHYNTYYQPVGKPPKKKKSKRILL
                     KILLTILIIIALFIGIMYFLSTRDNVDELRKIENKSSFVSADNMPEYVKGAFISMEDE
                     RFYNHHGFDLKGTTRALFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVA
                     HRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHITVLQSAI
                     LASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQLNR"
     gene            31174..31992
                     /gene="recX"
                     /locus_tag="PF788_000445"
     CDS             31174..31992
                     /gene="recX"
                     /locus_tag="PF788_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDG6302734.1"
                     /translation="MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQ
                     LEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEVIQYLQKEEISEQAISEVIEYCY
                     REKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEIFTELYREQQELDD
                     IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEAVLDDLLQ
                     RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYKYDKIKAKLEESGIADGTEEIE"
     gene            31970..32284
                     /locus_tag="PF788_000446"
     CDS             31970..32284
                     /locus_tag="PF788_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000435810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhH family protein"
                     /protein_id="HDG6302735.1"
                     /translation="MEQKKLSEMSEPELRHEIQLYKEKMRKAEMNGILNEYDVYQSKV
                     IVAESYLVDRKKIEIGKIYKLTDGSNQYFKVERLKGIFAWGFRFNSDEPEEGLPIALL
                     QL"
     gene            32299..33816
                     /locus_tag="PF788_000447"
     CDS             32299..33816
                     /locus_tag="PF788_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6302736.1"
                     /translation="MGSSIVLKLLKVTHYYRNKQNKKWYLPFGYDAEDIDLNNISLHI
                     YQGEALGIIGEPESSKALVGQLLAGAIKPDKGKVVCTEDLFYGYIEDQSLIHQTVEAY
                     TAQLVQLFPYEINDHKAEQIIQYAHLGDYKTKPVNHISKAAYAQLLLSIARSSKSNII
                     ILNHVIDYLTPQFMERAIELTNDYIENNLTIVSIGDDIDKISQVSNYIAWFSHGQLRM
                     EGSLKQVIPSFKEHERDRLSLNSKEEIENFDLDWKKNRTRIPEMTYNFKRVERYNHAK
                     PPKFLVRFWTLASGTILGLALMMLLIFNNIGIISITDFTNRATMQNENKDPYGEKLAY
                     GIAFNGSVDMQGDKQVTIPKYSVVTITGENSKNYRVTADNKTYYVSKDKLEYFNPAGL
                     YQTHSFKKLAPYMKSNYSNYYAYFNSQLHKKHSSVIKTLVPDDDNRFVASVTQQPIQL
                     LFNDNNQLYGFVYPIVDKKELKDKFNINNNIWITKVGNGYCIANLKEDKWIYIEL"
     gene            33825..34661
                     /locus_tag="PF788_000448"
     CDS             33825..34661
                     /locus_tag="PF788_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302737.1"
                     /translation="MLDNIILYFKNLPHTKRYVTERLKQSWKSFLIVLAACLILIIAS
                     ETLFSFSHLTDVKEVRWLFRIIVLIVFAVVMFTIYISYHHYMNDFLVTKLFNISAATP
                     VVIMSILSFIMLVILTMISALVKPVNFETSYIALFYFIVMATIFVGLISVTFGLIRLL
                     TEKINIIFYGVCVLCFLLLPIIFIPNPNHVFINHILMLNPMYYIVNGIAQSIIFGISS
                     MENIPYHFYFILFLCLIAAVNFVLARYTTHAIYNKTSKVTQTDNQQDVSNDSTDEADT
                     SS"
     gene            complement(34922..35899)
                     /locus_tag="PF788_000449"
     CDS             complement(34922..35899)
                     /locus_tag="PF788_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDG6302738.1"
                     /translation="MDTATHIAIGVGLTALATQDPAMASTFGATATTLIVGSLIPDGD
                     TVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFSGTNPFHVWMWAQLAVFL
                     HVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFTVLCIGIVLWVIGLHPFAVFFP
                     IIALLIIYYMIRFKMRAVIKQQALKAIQQEHHPVKVFVAPTIKFMEWRVAIQTDAHDY
                     VGKAYGRNVVFSDKVERQTLSTDSILWKVKGNKDIRTFLNFSSIYRWQTTTLADGSTE
                     IRLIDLRYLKNDHYSFVAIAHVTNDNVIDHSYIGWVFTEDKLQRKLYAK"
     gene            36051..37088
                     /gene="mutY"
                     /locus_tag="PF788_000450"
     CDS             36051..37088
                     /gene="mutY"
                     /locus_tag="PF788_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDG6302739.1"
                     /translation="MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQ
                     VKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVHDKYEG
                     LVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQST
                     RKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKL
                     PVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKI
                     GHDIQPVETPIFELKHQFTHLTWKIKVYAVSGAINIETLPDDMIWFDLSDRDQYTFPV
                     PMSKIYQFING"
     gene            37390..37932
                     /locus_tag="PF788_000451"
     CDS             37390..37932
                     /locus_tag="PF788_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HDG6302740.1"
                     /translation="MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGG
                     NDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEAL
                     KYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKG
                     PFAPDFIKVWKERYKKIRQY"
     gene            38223..39959
                     /locus_tag="PF788_000452"
     CDS             38223..39959
                     /locus_tag="PF788_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAV1866 family putative multidrug efflux ABC
                     transporter"
                     /protein_id="HDG6302741.1"
                     /translation="MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGV
                     INNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYN
                     HLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD
                     VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAI
                     EDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSIT
                     VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIE
                     IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD
                     VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA
                     AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL
                     DLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ
                     GAYEHLYSIQNL"
     gene            39968..40060
                     /locus_tag="PF788_000453"
     CDS             39968..40060
                     /locus_tag="PF788_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302742.1"
                     /translation="MFDFSTILKRKFVTGWWGHNIEKAVRDFLN"
     gene            complement(40150..>40401)
                     /locus_tag="PF788_000454"
     CDS             complement(40150..>40401)
                     /locus_tag="PF788_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HDG6302743.1"
                     /translation="YNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIV
                     AAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL"
BASE COUNT        14685 a         5883 c         8066 g        11767 t
ORIGIN      
        1 tgtagtaaac ggcacttatt actttcatgg gcatatcgta ccaggttggc aaggcgttaa
       61 aaagatgttt gatacagcag aagagctcga aacatatata aagcaacatg gtttggaata
      121 cgaggagcag aagcaactaa ctttatttta gaggagatgg aaatgatgaa taaccgcgaa
      181 caaattgaac aatcaattat cagtgctagt gcctataacg gtaatgacac agagggatta
      241 ctaaaagagg ttgaagacgt gtataagaaa gcgcaagcgt ttgatgaaat acttgagggt
      301 ttacctaatg ctatgcaaga tgcactcaaa gaagatattg gtcttgatga agcagtaggg
      361 attatgacgg ggcaagtggt ctataaatat gaggagagtg aagagtgatg agtagtccga
      421 aaattaagcc ctgccctttt tgtggcggtc tagcagatat acgatatagc tttgatacat
      481 tattaattga atgtactaat aaaaattgca aactacaacc atctacatgg tcacacgttc
      541 ataccaataa tgcagaaaaa cttataaaaa tttggaataa aagaaaagat ttagaggagc
      601 aggaaaatga ctaacacatt aacagtagat caattacaag agttattaca aatacaaaag
      661 gagtttgacg atagaattcc aacacttaat ttacaagata gtaaggttgc gtatgttgtt
      721 gaattctttg aatggtttaa tacattggaa acgtttaaaa actggaaaaa gaaaccaggt
      781 aagccattag atgtgcagtt agatgagtta gcagacatgt tggcgtttgg attgagtatt
      841 gcgaatcaac aatcagacga tatggaagaa attttggatt atgtagaaga tggcattttt
      901 accgattgta tagatagtgt tgaaattgat tttaatgaca gtgatatagt tgatgaattt
      961 atgtcagata tagacgaatt atacaacggt tggtttagta ttaatttatt cttaccattc
     1021 gctattgcaa tccaatacta cactatcgac aaactcatct cagcttataa aaagaaaatg
     1081 gagcgaaatc atgcaagaca agatggaaca gcagacacag aaaaaggtta cgtgtaaaga
     1141 catcttagat cgagtcaagg aggttttggg gaagtgacac aatacttagt cacaacattc
     1201 aaagattcaa caggacgtaa acatacacac ataactaaag ctaagagcaa tcaaagctat
     1261 acagttgttg aggcagagag taaagaagaa gcaaaagaga agtacgaggc acaagttaaa
     1321 agagatgcag ttattaaatt aggtcagttg tttgaaaata taagggagtg tgggaaatga
     1381 atcagctgag aattttatta catgacggta gtagtttgat attacatgaa gatgaattat
     1441 ttaacgaaat agtatttgtt ttggatgatt ttagaaatga tgatgactat ttaacgatag
     1501 aaaaagatta tggcagagaa cttgtattga acaaaggtta tatagttggg attaatgttg
     1561 aggaggcaga cgatgattaa catacctaaa atgaaattcc cgaaaaagta cactgaaata
     1621 atcaaaaaat ataaaaataa aacacttgaa gaaaaagcta agattgaaga tgatttcatt
     1681 aaagaaatta atgataaaga cagtgaattt tacagtccta tgatggctaa tatgaatgaa
     1741 catgaattaa gggctatgtt aagaatgatg cctagtttaa ttgatactgg agatgacaat
     1801 gatgattaaa aaacttaaaa atatggattg gtttgatatc tttattgctg gaatactgcg
     1861 attattcggc gtaatcgcac tgatgcttgt tgtcatatct cctatctata cagtggctag
     1921 ttaccaaaac aaagaagtac atcaagggac aattacagat aaatataaca agagacaaga
     1981 taaagaagac aagttctata ttgtgttaga caacaagcaa gtcatcgaaa actctgactt
     2041 actattcaaa aagaaatttg atagcgcaga catacaagct aggttaaaag taggcgacaa
     2101 agtagaagtt aaaacgattg gttatagaat acacttttta aatttatatc cggtcttata
     2161 cgaagtaaag aaggtagata aataatgatt aaacaaatat taagactatt attcttacta
     2221 gcgatgtatg agttaggtaa gtatgtaact gagcaagtat atattatgat gacggctaat
     2281 gatgatgtag aggcgccgag tgacttcgca aagttgagcg atcagtctga tttgatgagg
     2341 gcggaggtgt cagagtagat gtatagcaaa gagtcaattg ttaatatgat aggcacacat
     2401 aaaatgaagt gtaatgtatt agcagatgta ataccggaat atgatagcaa ttcaattgca
     2461 cagtatggca tacaagcaac gttgccgaaa ccacaagggg aaaactcaag taaagttgaa
     2521 gatgttgttg tgaggcttga gagagcaaat aaaaggtatg ctcagatgtt aaaagaagtt
     2581 gagtttataa atcaatcaca acagagatta ggacacgttg acttttgttt cttagagtta
     2641 ttgaagaaag gttataacag ggatgcgatt atcaagaaga tgcctaactc taaattaaac
     2701 agaaacaact tcctagcacg ccgtgatgag ttagcagaaa agatttatct actacagtga
     2761 cgaaaatgac gaaaatgaca gaaatgacga aaatgacact atttttaaac tgtgaattaa
     2821 ttttatataa ttgatttgta agaattatct taagacgtgg ggtaatagcc acattagatg
     2881 ttctcatcga tgtgattgag aagtgacaaa catgtaaagt tgatatgtta cgctattgat
     2941 cacttactac ctgcctatat ggtgggtagt ttaattcttg cattttgagt cataactatt
     3001 ttcctccttt cgcatttatt gaacgtagct cctgcacaag atgtaggggc atttttgtat
     3061 ttaaataact agagtaatta acgtaaaggc gtgtgataca gtgaaaacaa ttgattaaat
     3121 taacaccgaa gcaagaaaag tttgtgctag gactcataga gggcaagagc caacggaaag
     3181 catatattga cgcagggtat tcgactaaag gtaagagtgg ggaatatcta gataaagaag
     3241 cgagtacact ttttaaaaat cggaaggttt ccggaaggta cgaaaaattg cgtcaagaag
     3301 tagctgaaca atcaaaatgg acacgccaaa aagcctttga agaatatgag tggctaaaga
     3361 atgtagctaa gaatgacatt gaaatagagg gagtgaagaa agcgacagct gatgcattcc
     3421 tcgctagttt agatggtatg aatagaatga cgttaggtaa cgaagtttta gctaacaaga
     3481 aaatagaaac tgaaattaag atgcttgaga agaagattga acaaatagat aaaggtgaca
     3541 gtggaacaga agataaaatc aaacaacttc acgacgcaat aacggaagtg atcgtcaatg
     3601 aataaactta aatctttata tacggacaaa caaattgaaa tattgaaaca aacgcaaaaa
     3661 caagattggt ttatgttaat taatcacgga gctaagcgta caggtaaaac aatattaaac
     3721 aacgacttat ttttacgtga gttaatgcgt gtgcgaaaga tagcagacga agaaggaatt
     3781 gagacacctc aatatatact tgctggtgca acattaggta cgattcaaaa aaacgtacta
     3841 atagagttaa ctaacaaata tggcattgag tttaattttg ataaatacaa ttcattcatg
     3901 ttatttggcg ttcaagtggt tcagacaggt cacagtaaag taagtggtat aggagctata
     3961 cgtggtatga catcgtttgg tgcatatatc aacgaagcgt cgttagcgca tgaagaagtg
     4021 tttgacgaga ttaagtcacg ttgtagtgga actggtgcaa gaatattggt agataccaac
     4081 cctgaccatc ccgaacattg gttgttgaaa gattacatcg aaaatacaga tcctaaagca
     4141 ggtatactga gttaccaatt taagctcgat gacaataact ttcttaacga tagatataaa
     4201 gagtctatta aggcttcaac accatcaggt atgttctacg aacgcaatat caacggtatg
     4261 tgggtgtctg gtgacggtgt agtatatgcc gactttgatt tgaatgagaa tacgattaaa
     4321 gcagatgaat tgaacgacat acctatcaaa gaatactttg ctggtgtcga ctggggttac
     4381 gagcattatg gatctattgt gttaatagga cgaggtatag atggtaactt ttattttatt
     4441 gaggagcacg cacaccaatt taagtttatt gatgattggg tggttattgc aaaagatatt
     4501 gtatgtagat atggcaatat taatttttac tgcgatactg cacgacctga atacatcact
     4561 gaatttagaa gacatagatt acgtgcaatt aacgctgata aaagtaaact atcgggtgta
     4621 gaggaagttg ctaagttgtt caaacaaaac aagttacttg ttctttatga taatatggat
     4681 aggtttaagc aagaggtatt taaatatgtt tggcacccta caaacggaga gcctataaaa
     4741 gaatttgatg acgtgttgga ctcgttaaga tatgccatat acacacatac taaacctgaa
     4801 cgattaagga gggtgaaatg acattgtata agttaataga tgatattgaa gcacaaggaa
     4861 tattgcctaa gcatattgag gctctaatag agtcacataa agacgataga gagagaatgg
     4921 ttaatctcta taatagatac aagacacata ttgactatgt accaatattc aaacgtcgac
     4981 caattgaaga aaaagaagat tttgaaactg gtggaaatgt aaggcgatta gacgtgtctg
     5041 ttaataacaa acttaacaac tcttttgaca gcgaaattgt tgatacacgt gttggttatt
     5101 tacatggtgt tcctgttact tatgatttag atgaaaacgc agaaaaaaac gaaaagttga
     5161 aaaagtttat aaccaacttt gtcattagaa atagtgttga tgatgaggat tctgaaatag
     5221 gtaaaatggc agcaatttgc ggatatggcg ctaggttagc atatattgat acgaatggtg
     5281 atattaggat taagaatata gatccctata atgttatttt tgttggcgac aatattttag
     5341 aacctacata ctcgttgcgc tacttttatg aaaaagatga tgataatggc actgattatg
     5401 tgtacgcaga gttttacgat aatacttatt attatgtatt tcgaggagaa ggtattgacg
     5461 ctttgcaaga agttggacga tatgaacatt tatttgatta caatccattg tttggtgtac
     5521 ctaacaacaa agagatgata ggagatgctg aaaaggttat tcacttaatt gacgcatatg
     5581 atttaacaat gagcgatgca tcaagtgaga ttagtcagac acgtttagca taccttgtgt
     5641 tacgcggtat gggtatgagc gaagaaatga ttcaagaaac acaaaagagt ggcgcatttg
     5701 agttgttcga caaagatatg gacgttaaat acttaacaaa agacgtaaat gacacaatga
     5761 ttgagaacca tttagatcga attgaaaaga atatcatgcg ttttgcaaag tcagtaaact
     5821 ttaattctga cgagtttaat ggaaatgtac ctatcattgg aatgaaactt aagcttatgg
     5881 ctttagagaa caagtgtatg acgtttgagc gtaagatgac agctatgttg aggtaccaat
     5941 tcaaagttat tttatctgca ttaaagcgta aagggtacaa cttaaatgat gatagttatt
     6001 taaatctgat atttaagttc actcgaaaca ttccagttaa taagttagaa gaatcacaag
     6061 tgctaatcaa ccttaagggg caagtttcag aacgaacaag gttgggacaa tcacaactag
     6121 ttgatgatgt tgattacgaa ttagacgaaa tggaaaaaga aagtcttgaa tttaatgaca
     6181 aattacctga tatatatgaa ggtgacgcaa atgacaaatc ccaaaataac caatcagaat
     6241 gatattgatg agtatatcga gggtttaatc tctaaagcag aaaaaccaat agaacaacta
     6301 tttgctaatc gacttaaaga gatcaaacaa atcatcgcag atatgtttga aaagtatcaa
     6361 agtgatgatg tgtatgttac atggactgaa ttcaataaat acaacaggct caataaggag
     6421 ttaactcgta taggtacaat gttgactgat gactataggc aagtagctaa gatgattcag
     6481 aagtcacagg aagatgctta tatcgaaaag ttccttatga gcctttattt atatgaaatg
     6541 gcgagtcaaa catctatgca gtttgatgtt ccgagtaaag aggtaatcaa atcagctatt
     6601 gaacaaccta ttgagttcat tcgtttaatg ccaacactac aaaaacatcg tgatgaagta
     6661 ttgaaaaaga tacgtatgca cattacacaa ggtattatga gtggagaggg ttactctaag
     6721 atagctaaag caatacgtga tgatattggc atgtctaaag ctcaatcatt gcgtgtggct
     6781 cgcacagaag caggcagagc aatgtcgcaa gctgggcttg atagtgcaat ggttgctaaa
     6841 gataatgggt tgaagatgaa gaaacgttgg catgctacca aagatacacg tacacgcgat
     6901 actcatcgcc atttagatgg tgaatctgta gaaatagacc aaaactttca atcaagtggg
     6961 tgcgttggac aagcaccaaa gctatttatc ggtgtaaaca gtgcgaaaga gaatattaat
     7021 tgtcgttgta aattactcta ttacattgat aaagatgaat tacccactgt gatgagagtg
     7081 cgtaatgatg atggtgaaaa tgaagttata ccattcatga attatcgtga gtgggaaaaa
     7141 cacaagagga aaaagaaata atgtatctat cgaccttagc atgtcgttaa actgcttttt
     7201 attatgcact tttcggactg ttagggtacg cgaagggcaa aaaggagttt tgatatatga
     7261 atatcgaaga agttaagtct ttttttgaag aacacaaaga cgataaagaa gtaaaagatt
     7321 atctaaacgg acttaagacg gtgtctgttg atgacgttaa aggcttttta gatacagaag
     7381 aaggtaaacg attcattcaa cctgaattag atcgttatca ttcgaaagga ttagaatcat
     7441 ggaaagagaa aaatcttgag aatctaatcg aacaagaagt acggaagcgt aatcctgagc
     7501 aatcagaaga acaaaaacgt attagtgctc ttgaaaaaga gttagaaaaa cgcgacgcag
     7561 aggcaaaacg tgagaagtta agaagtaacg cgctaggtaa agcgcaggaa ctaaatttac
     7621 caacatcctt agttgataga tttttaggcg attctgatga agatactgaa caaaacttaa
     7681 aagctttaaa agaaacattt gacaagtatg ttcaagaagg tgttgagtct aaatttaaat
     7741 cgagtggaag agatgttaaa gaatcacaaa atcaagattt agacccttca aatgtaaagt
     7801 ccattgaaga aatggcgaaa gaaatcaata ttagaaaata aagtgaggta ataaaatatg
     7861 acaactccaa catacacgcc aggcaatgtt attttatcgg attttaaaaa cggcgttatt
     7921 ccagcagaac aaggtacttt aatcatgaaa gacattatgg ctaattcagc aattatgaaa
     7981 ttagctaaaa atgagccaat gacagcacaa aagaaaaaat ttacttactt agctaaaggt
     8041 gtaggcgcct actgggtatc agaaacggaa cgtattcaaa cttctaagcc tgaatatgca
     8101 caagcagaaa tggaagctaa gaaaattggt gtaattattc cgttatcaaa agagtttctt
     8161 aaatggactg caaaagattt ctttaatgag gttaaacctt taattgcaga ggcgttttac
     8221 aaagcgtttg accaagctgt tatctttggt actaaatcac cttacaacac ttcaactagt
     8281 ggtaaaccgc ttgttgaagg cgcagaagag aaaggtaacg ttgttacaga tactaataat
     8341 ttatacgtag acctttcggc attaatggct actattgaag atgaagagtt agatccaaac
     8401 ggagtattaa ctacacgttc attcagaagt aaaatgcgta atgctttaga tgctaatgac
     8461 agaccattat ttgatgctaa cgggaacgag attatgggat taccactatc ttatactgga
     8521 gcggatgtat acgacaaaaa gaaatcgtta gcactaatgg gtgattggga ttacgcacgt
     8581 tacggtatct tacaaggtat tgagtatgca atttctgaag atgccacgtt aacgacgtta
     8641 caagcatcag atgcttctgg ccaaccagta tcattatttg aacgtgatat gttcgcttta
     8701 cgtgcgacga tgcatattgc atacatgaac gttaaaccag aagcgttcgc aacgcttaaa
     8761 ccaactgaat aggaggagat atgatggcta atcctgcaga agagattaag gtaaaaaaag
     8821 acaatatgac tattactgtt acaaagaagg catttgactc ttattacagt cttgtcggtt
     8881 acaaagaggt taaatcacgt cgtactacgt ctgataagag cgagtgataa aaatgactct
     8941 ttatgaagat gttaaacttt tactcaagaa aaatggagtg gaagttaaaa gtgatgaaga
     9001 agaaatattt aagatggaag ttgacggaat actagaagat gttagggata taacaaacaa
     9061 tgattttatg aaagatggtc aagtcattta tccttactca atcaaaaagt atgtcgcaga
     9121 tgtcctagag tattatcaac gacctgaagt taaaaagaat ttaaagtcaa gaagtatggg
     9181 gacagtgtcg tacacttata acgatggtgt ccctgattac attagtggag tattaaacag
     9241 gtataaacga gcaaagtttc atccgtttaa accaataagg tagaggtgtt gtttgtgttt
     9301 aacccatacg acgaattccc tcacactatt tctattggaa gtatcaaaaa agtaggagag
     9361 tatccaatta tacaagagcg ctttgtaaac gataaaacaa ttaaaggatt tatggatacg
     9421 cctactacat ctgaacaact aaaatttcat caaatgtcac aagaatatga cagaaaccta
     9481 tatgtacctt atgacttgcc aatatctaaa aacaatttat ttgagtatga gggtagaatc
     9541 tttagtattg aaggtgattc tgtagatcag ggcggacaac atgaaattaa gttactacga
     9601 cttaagcagg tgccatatgg caaaggttaa gtatggtaat tgggacttag ttaaggaact
     9661 tgaggagttc gaggaagaaa cgattaaatg ggctaaaaaa ggcatagcca agacaattaa
     9721 caaaatatat aatactgcag ttgcgttggc tccggttgac atgggttttt taaaagaaag
     9781 tatcgacttt atgtataaag acggtgggct tacaggcatc atcagtgtag gcgctgaata
     9841 cgctatatac gttgagtatg gaacgggtat ctatgctact ggtcccggtg gtagtagagc
     9901 aaaaaaactc ccttggtctt atgaagatga agatggagaa tggcacacta cttacggtag
     9961 tccagcgcaa cctttttgga acccagctat cgatgaaggc agagcattct tcaataagta
    10021 tttttcatag aggtggttaa atatgtgggt atcagttgaa cctgaactta caaatcaaat
    10081 atataaaaga ttaatctcag accctaacat taacaaacta gttgatgata gggtctttga
    10141 cgttgttcaa gatgacgctg tttacccata tattgttgtg ggtgaatcta acgtcactaa
    10201 caacgaatct agtgcaacaa tgagagaaac ggtcggtatt gtcatacatg tgtattcaca
    10261 gttcgctaca caatacgagg ctaagctcat tttaaatgcg ataggctatg tgcttaacag
    10321 gcctatagag atagaaaatt atgaatttca atttagtcgt atcgatagtc aagcggtatt
    10381 ccctgatata gacaggttta ctaagcatgg cacgatacgg cttttattta agtacagaca
    10441 taaaaagaaa aacgaaggag tgtattaaat ggcgcaaaaa aactatttag cggttgtacg
    10501 tccagctgaa actgatttag atttagttga tgctttatta ttagctgact tacaagaagg
    10561 tggacatacg attgaaaatg atttagctga aatagtacga ggcggtaaaa cggactattc
    10621 ttccaatgca atgtcagaat catttaaatt aacgattggt aatgtgcctg gagacaaagg
    10681 aattgaagca gtgaaacacg ctgtacaaac aggtggacag ttgcgtatat ggctttatga
    10741 gcgtaataaa cgtgcagacg gtaaacatca cggaatgttt ggttatgttg ttccagaatc
    10801 atttgaaatg tcgtttgatg atgaaagtga caaaatcgaa ctgtcattaa aagttaaatg
    10861 gaatacagcg gaaggcgctg aagataactt gccaaaagaa tggttcgaag ctgcaggtgc
    10921 tcctacagtt gaatacgaaa agttcggcga aaaagtaggt acgttcgaga atcaaaagaa
    10981 agctagtgtt gtatctgatt cacacacgga agaccattct atgtaaacta atagatcaag
    11041 ggggcgtaag ctccctattt ttttataaaa aaattgaaaa gaggtatata ttttgactga
    11101 atttaatcca attacaacat taaaaattaa tgacggagaa aaagattacg aagtagaagc
    11161 aaaagtaaca tttgcatttg accgaaaagc tgaaaaattc tcagaagata gcgaagatgg
    11221 gagaaaagga gcaatgccag gattcaatgt tatctttaac ggtttgctag aatctagaaa
    11281 caaagcgatt ttacaatttt gggaatgtgc tactgcttat ttaaaaaacc caccaactcg
    11341 agaacaatta gaaaaagcga ttgatgattt catcactgaa aacgaggata ctttgccgtt
    11401 attacaaggg gctttggaca aacttaacaa tagtggtttt ttcaagaggg agagtcgctc
    11461 gtactggatg acattgaaca aagcaccgaa tatggccaaa agcgaggaca aagaaatgac
    11521 gaaagcaggc atagaaatga tgaaagagaa ttacaaggaa atcatgggcg cagaacctta
    11581 cacgattact caaaaataag gcaactgaca gctagatatt taggatatat ccctgaacat
    11641 gaattgttag cactaacacc tgctgaatgg cgtgattggc ttattggtgg tcaggatagg
    11701 tacctagatc aaagacaatt attaattgaa caagcgcaag ctaacggctt agtacaagct
    11761 tctaagaggc taactagtat gattcgtgac attgagaaac aacgttacga aataagagaa
    11821 cctggtagct atgctcgtgt acaaaaagct agattagaag aagaaaaaag aagacgtgaa
    11881 ctcttcaaag aaggcacaag aaaattcctt gaatcgaaag gaggttagcc tttggatact
    11941 cattttatgg caaagattat ggccaatatt agagatttcc aaagcaacgt aaggaaagct
    12001 caacgattag caaagacgtc tgtaccaaac gaaattgaaa cagatgtaaa agcagatatt
    12061 tcaagattcc aaagagcttt acaacgcgct aaagctatgg cgcaaaaatg gcgtgaacat
    12121 aacgttaaaa tagatggtaa taattcaccg ttaaaacgtg caattgctag tgcaaaaacg
    12181 atgttggcca cgttacacaa caaaacaata aaagttaatt tcgatacgag aggtatgaca
    12241 aaaacccaaa ttttaactaa ggcactgaat cagtccttaa ctgattatag tgagaaaatg
    12301 gacgcgctag ctactaaaat tcgtacattt ggtacaattt ttgcacaaca agttaaaggc
    12361 ttaatgattg ctagtataca agcattgata ccagtgattg ccggattagt acctgcaata
    12421 atggcagtac ttaatgcggt tggtgtatta ggtggtggcg ttttaggttt agttggcgca
    12481 ttctctgtcg caggtcttgg agttgttggc tttggtgcaa tggctattag cgctcttaaa
    12541 atggttgaag atggaacatt ggcagtaaca aaagaagttc aaaactttag agatgcgagc
    12601 gatcagttaa aaactacatg gcgtgatatt gttaaagaga atcaagcaag tatctttaat
    12661 gcgatgtcag caggtatcag aggtgttaca agtgcgatgt ctcaattaaa accattctta
    12721 tctgaagtat ctatgctggt tgaagcaaac gcacgcaagt ttgaggattg ggttaaacat
    12781 tctgaaacaa ctaagaaagc atttgaagca ttgaatagca taggtggcgc aatcttcgga
    12841 gatttattga acgctgcagg aagatttggc gacggattaa ttaacatttt cactcaatta
    12901 atgccgttgt tcaaatttgt gtctcaagga ctacagaaca tgtccatagc tttccaaaat
    12961 tgggctaata gtgtggctgg tcagaatgct attaaagcgt ttattgacta cactaccact
    13021 aacttaccta agattggtca gatatttggc aatgtgttcg ctggtattgg taatttaatg
    13081 attgcttttg ctcaaaacag ttctaacatt tttgactggt tagttaaatt aacttctcaa
    13141 tttagagcat ggtcagaaca agtaggacaa tcacaaggat ttaaagactt tatcagttac
    13201 gttcaagaga atggtcctac tattatgcag ttaatcggta atatcgtaaa agcgttagtg
    13261 gcatttggta ctgcaatggc tcctatagct agtaaattac tagatttcat tactaattta
    13321 gctggattta tcgccaaact attcgaagca cacccagcag tcgctcaaat tatcggtgtt
    13381 atcggtattt taggtggcgt attttgggct ttaatggctc cgatcgcagc tgttagcagt
    13441 gtgttaagta atgtgtttag tatgacttta ttgaatgttg tcaaaagaat actggattta
    13501 actagaataa ctggggtggt aagtaaagcg ttcggtttat tgactggtgc tttcacaagt
    13561 atttcttggc caatattagc agtagttgca gtcattggtg tattcattgg tattcttgtt
    13621 tatttatgga aaacaaacga gaaattcaga aaaacaataa cagaagcttg gaacggtatt
    13681 aaaacagcag tttccggtgc gattcaaggt gtagtagatt ggttaactca attgtggggc
    13741 aaaattcaat caacattaca gccgatcatg cctattttgc aaatgttagg tcaaatattc
    13801 atgcaagttt taggtgtttt agtcataggt atcatcacaa acgttatgaa tatcatacaa
    13861 ggattgtgga ccttaattac aatcgcgttc caagccatag gaacagtaat atccgtagca
    13921 gtccaaatca tagtaggttt gttcactgct ttaattcagt tgcttactgg agacttctca
    13981 ggtgcttggg agactattaa aactacggtt accaatgtac ttgatacgat ttggcaatac
    14041 atgcaatcag tttgggagtc aattatcggc tttttaactg gcgtaatgaa tcgaacgctt
    14101 tctatgtttg gtacaagttg gtcacagata tggagtacaa tcactaattt tgttagcagt
    14161 atttggaaca ctgttacaag ttggttcagt cgtgttgctt cgagtgtagc cgaaaaaatg
    14221 ggacaagcac taaactttat tatcataaaa ggttctgaat gggtttctaa catttggaat
    14281 acagttacaa gtttcgcgag taaagtagct gatgggttta aaagagttgt ctcaaatgta
    14341 ggagacggta tgagtgatgc acttggtaag attaaaagtt tcttcggtga tttcttaaat
    14401 gccggagcgg aattaatcgg caaagtagct gagggtgtag ccaatgctgc gcacaaagtt
    14461 gttagtgcag taggcgatgc aatttcatct gcatgggact ctgtaacttc attcgtaagt
    14521 ggacacggcg gaggtagtgg cttaggcaaa ggtttagcgg tatcacaagc taaagtaatg
    14581 gctacagact ttggcagtgc ctttaataaa gagctatcct ctactttgac agatagtata
    14641 gtagatcctg taagtacttc tatagacaga cacatgacta gcgatgttca acatagctta
    14701 aaagaaaata atagacctat tgtgaatgta acgattagaa atgagggcga ccttgattta
    14761 attaaatcac gcatcgatga catgaacgct atagacggaa gtttcaactt attataaggg
    14821 aggtttgtta gttgatagcg cacgatatag aagtaataag gaatggttcg cagtatcgcg
    14881 tcagtgacaa tcctttcact tataatcact tggaagtagt tgaatataac gttacaggcg
    14941 caggatatca tcgtaactat tctgatatag agggtattga tggtagattt cataattacg
    15001 ctaaagaaga acttaaaaaa gtagagctta agctaaggta taaagtacct aaaattgctt
    15061 atgcttcaca tttaaagtca gacgtccaag cactatttgc tggacgtttt tatttaaggg
    15121 aattagctac accagacaat tcaattaagt atgagcatat attagatata ccaaaagaca
    15181 aacaagcatt tgagcttgat tatgttgatg gacgacaact ttttgtagga ctagtaagtg
    15241 aagtttcttt taacacaact caaatatcag gggaattttc tttgtcgttt gaaacaaccg
    15301 aactaccata ctttgaaagt gtcggtttta gtactgatct tgaaagtgat aacgaccctg
    15361 aaaaatggtc ggtacctgat agattgccta caaacgaagg tgataagagg cgtcaaatga
    15421 cattttacaa cactaactca ggagaagttt attataacgg tgatgttcct ttaacacagt
    15481 ttaatcagtt taatgttgtt gaaatagagt tagccgaaga tgttaaagct aatgataagg
    15541 atggattcac tttctataca gataaaggaa atatctcagt tattaaggaa gttgatttaa
    15601 aagccggaga taaaataatc ttcgacggta aacataccta tagaggttat ttaaatatag
    15661 attcttttaa taaaacttta gaacaaccgg ttttatatcc aggctggaat cgattcaagt
    15721 ctaataaagt aatgaaacaa attacattta gacacaaatt atattttaga taaggagtag
    15781 cctatgccaa ttttattaaa aagtctacag ggtgtagggc acgctattaa tgttagtaca
    15841 aaagtaagta aaaagttaaa tgaagatagt tctttggatc taactattat cgagaacgcg
    15901 agtacgtttg acgcaatagg tgctataact aaaatgtgga cgatcactca tgttgaaggt
    15961 gaagatgatt tcaacgaata tgtaattgtc atacttgata agtctactat tggtgaaaaa
    16021 ataaggcttg atatcaaagc tagacaaaaa gaacttgatg accttaacaa ttctaggatt
    16081 taccaagagt ataacgaaag ttttacaggc gttgagttct tcaatactgt ctttaaagga
    16141 acgggttata agtatgtatt acatccaaaa gtagatgcat ctaaattcga gggattaggc
    16201 aaaggagata cacgattaga aatctttaaa aaaggacttg agcgttatca tctcgaatat
    16261 gaatacgatg caaagactaa aacgtttcat ttgtatgatg aattatctaa gtttgccaat
    16321 tattacatta aagctggtgt gaatgctgat aacgtcaaaa tacaagaaga cgcatctaaa
    16381 tgttatacct ttattaaagg ttatggtgat tttgatggac aacagacttt tgcagaagcg
    16441 ggactacaaa ttgaattcac tcatccatta gcacaattga taggtaaaag agaagcgcca
    16501 ccacttgttg atggacgtat taaaaaagaa gatagtttaa aaaaagcaat ggagctagtg
    16561 ataaagaaaa gtgtcactgc ttctatttcc ttagattttg tagcgttacg tgaacacttc
    16621 ccagaagcta accctaaaat aggtgatgtt gttagagtgg tggattctgc cataggatat
    16681 aacgacttag tgagaatagt cgaaatcact acacatagag atgcgtacaa taatatcact
    16741 aagcaagatg tagtattagg agactttaca aggcgtaatc gatacaacaa agcagttcat
    16801 gatgctgcaa attatgttaa aagcgtaaaa tctacaaaat ccgacccatc taaagaacta
    16861 aaagcattaa acgcaaaagt taacgcaagt ttatccataa ataatgaatt ggttaagcag
    16921 aatgaaaaaa taaacgctaa agtcgataag atgaatacta aaacagttac aactgctaat
    16981 ggtacgatca tgtacgactt tactagtcaa tcaagtataa gaaacatcaa atcaattgga
    17041 acgattggcg actctgtagc tagagggtcg cacgcaaaaa ctaatttcac agaaatgtta
    17101 ggcaagaaat tgaaagccaa aacgaccaac cttgcaagag gtggcgcaac aatggcaaca
    17161 gttccaatag gtaaagaagc ggtagaaaac agcatttata gacaagcaga gcaaataaga
    17221 ggagacctaa tcatattaca aggtacagat gatgactggt tacacggtta ttggtcaggt
    17281 gtaccgatag gcactgataa aacggataca aaaacgtttt acggtgcctt ttgttctgca
    17341 attgaagtta ttagaaagaa taatccggat tcaaaaatac tagtgatgac agctacaaga
    17401 caatgcccta tgagtggtac aacaatacgc cgtaaagaca cggacaaaaa caaactaggg
    17461 ttaacacttg aggactatgt aaacgctcaa atattagctt gtagtgagtt agatgtacca
    17521 gtgtttgacg catatcacac agattacttt aagccataca atccagcttt tagaaaagcg
    17581 agcatggagg acggcttaca ccctaacgaa aaaggtcacg aggttattat gtacgagtta
    17641 atcaaagatt attacagttt ttatgactaa aggaggcaac caatggctta cggattaatt
    17701 acaagtttac attcaatgac aggtcggaaa atagttgctc aacatgagta taactatcgc
    17761 ttgttagatg aaggcatgag caaacttgag aaaatgttta tataccatca aaaagaagaa
    17821 atatacgcac actcagcgaa acaaattaaa tacttgaatg acagtgttga agattattta
    17881 acgtatttaa atggccgttt tagcaatatg gtactaggtc ataacggcga cggtatcaac
    17941 gaggtaaaag acgcgcgtgt tgataatact ggttatggtc ataagacatt gcaagatcgt
    18001 ttgtatcatg attattcaac actagatact ttcactaaaa aggttgagaa agctgtagat
    18061 gaacactata aagaatatcg agcgacagaa taccgattcg aaccaaaaga gcaagaaccg
    18121 gaattcatca cagatttatc gccatatact aacgcagtaa tgcaatcatt ttgggtagac
    18181 cctagaacga aaattattta tatgacacaa gctcgtccag gcaatcatta catgttatct
    18241 agattaaaac ctaacgggca atttattgat agattacttg ttaagaatgg tggtcatggt
    18301 acgcacaatg cgtatagata cattgatgga gaattatgga tttattcagc ggttttggac
    18361 ggtaacaaaa acaacaagtt tgtacgcttt aaatatagaa ctggagagat aacatacggt
    18421 aatgaaatgc aagatatcat gccgaatgta tttaacgata gatatacgtc ggcaatttat
    18481 aatccagtag aaaatttaat gattttcaga cgtgaatata aagcttccga aagacaactt
    18541 aagaattcgt tgaactttgt tgaggttaga agtgctgatg atattgataa aggtatagac
    18601 aaagtattgt atcaaatgga tatacctatg gaatacactt cagatacaca acctatgcaa
    18661 ggtatcactt atgatgcagg tatcttatat tggtatacag gtgattcgaa tacagccaac
    18721 cctaactact tacaaggttt cgatataaaa acaaaagaat tgttatttaa acgtcgtatc
    18781 gatataggcg gtgtgaataa caactttaaa ggagacttcc aagaggctga gggtctagat
    18841 atgtattacg atctagaaac aggacgtaaa gcacttttaa ttggggtaac tattggacca
    18901 ggtaacaaca gacatcactc aatttattct atcggtcaaa gaggtgtaaa ccaattctta
    18961 aaaaacattg cacctcaagt atcaatgact gattcaggcg gacgtgttaa accgttaccg
    19021 atacagaacc cagcatatct aagtgatatt acggaagttg gtcattacta tatctatacg
    19081 caagacacac aaaatgcgtt agatttcccg ttaccgaaag cgtttagaga tgcaggttgg
    19141 ttctttgatg tactgcctgg tcattataat ggtgcgttaa gacaagtact aactagaaac
    19201 agcacaggta gaaatatgct caaatttgaa cgtgttatcg acatctttaa caagaaaaac
    19261 aacggttcat ggaattttaa cccacaaagt gctggttatt gggaacatat ccctaagagc
    19321 atcacgaaat tgtctgattt aaaaattgtt ggtttagact tctatatcac cactgaagaa
    19381 tcaaaacgtt tttctgactt ccctaaagat tacaaaggta ttgcaggctg ggtgttagaa
    19441 gtaaaatcaa atacaccggg taacacaaca caagtgctaa gacgtaataa ctttgcttct
    19501 gctcaccagt ttttcgttag aaactttggt actggtggta atagtggttg gagcataata
    19561 gaaggtaagg aggttgaata atgttagtag ataatttttc aaaagatgat aacttaatcg
    19621 agttaaaaac aacatcacaa tataatccag ttattgacac aaacatcagt ttctatgaat
    19681 cagatagagg aactggtgtt ttaaattttg cagtaactaa gaataacaga ccgttatcta
    19741 taagttctga acatgttaaa acttccatag tgttaaaaac cgatgattat aacgtagata
    19801 gaggcgctta tatttcagac gaattaacgg tagtagacgc aattaatggg cgcttgcaat
    19861 atgtgattcc aaatgaattt ttaaaacatt caggtaaggt acatgctcag gcattcttca
    19921 cgcaacatgg gagtaacaac gtagttgttg aacgtcaatt tagtttcgat attgaaaatg
    19981 atttagtcag tgggtttgat ggcataacaa agcttgttta tatcaaatct attcaagata
    20041 ctatcgaagc tgtcggtaaa gactttaacc aattaaagca aaatatggct aatacacaaa
    20101 cgttaatagc aaaagtgaat gatagtgcga caaaaggcat tcaacaaatc gaaatcaagc
    20161 aaaacgaagc tatacaagct attactgcga ctcaaactag tgcaacacaa gctgttacag
    20221 ctgaattcaa taaaatagtt gaaaaggagc aaacgatatt tgcgcgtgtc aatgaagttg
    20281 agcaacaaat caatggtgct gaccttgtca aaggcaactc gacagtcaat tggcaaaagt
    20341 ctaagattac tgatgattat ggcaaagcga ttgaatcgtc tgagcagtcc atagatagcg
    20401 ttttaagcac agttaacaca tctaggatta ttcatattac taacgcaaca gatgcgccag
    20461 aaaagacgga tataggcacg ttagagaagc ctggacaaga tggtgttgat gacggttctt
    20521 cgttcgatga atcaacttat acatcaagca aatctggtgt gttagttgtt tatgttgttg
    20581 ataataatac tgctcgtgca acatggtacc cagatgattc aaacgatgag tacacaaaat
    20641 acaaaatcta cggcacgtgg tacccgtttt ataaaaagaa tgatggaaac ttaactaagc
    20701 aatttgttga agaaatatct aacaacgctt taaatcaagc taaacagtat gtagatggta
    20761 agtttcaaag tacaagttgg caacaacata aattaacaga acataacggt caatcaatcc
    20821 aaaagaactt atataacgcc aaaggtaatt tagaagcatt gggcgctggg aattattacg
    20881 taacaagtgt acctgattta ccaggtattg ttgaaagtta cgaaggctac ttatcagtat
    20941 ttgttaaaga tgatgcaaat aagttattca acttcacacc ttcaaactct aaaaaagttt
    21001 atacacgatc aatcacaaat ggtcgattag actcacaatg ggctacacct aacgaacata
    21061 aaacagccgt gttattcgac ggtgctgcaa acggtgtagg aacaaggatt aatttaaccg
    21121 aagcttatac aaattatgca attctattca taagcggtac ttatccaggt ggtgttattg
    21181 aagcattcag tttaacctct ataccaaatg cgattcaatt aagtaaaaca aatgtagttg
    21241 actcagacgg taacggtggt ggtagttatg aatgcttaat aactaaagaa agtggtacga
    21301 cgttaaaaat cgataacgat gtgtaccttg atttaggcag taaaacaggt tctggtgcta
    21361 atgcaaacag agttacgata aataaaattg tggggtggaa ataatgaaaa tcacagtaaa
    21421 cgataaaaac gaagttatcg gatacgttaa tactggcggt ttacgcaata gtttagatgt
    21481 agatgataac aatgtgccta tcaaattcaa agaagagttt gaacctagaa agtttgtttt
    21541 cactaacggc gaaattaaat ataacagcaa ttttgaaaaa gaagacgtac cgaatgcatc
    21601 aagccaacaa agtgaatcag atttgagtga tgaagaactt cgcggaatgg ttgcaagtat
    21661 gcaaatgcag gtgacgcaag taaacatttt ggcgatggaa ttaaagcaac aaaacgctat
    21721 gttaacacaa cagttgactg aactaaaagc tggtaaaaca aatacagagg gggacgttta
    21781 aatggagaaa attaagatga tttatccaac tttcaaggac attaaaactt tttatgtgtg
    21841 gggttgctat aaaaatgacc aaattaagtg gtacgtagac atgggtgtaa tcgacaaaga
    21901 agaatatgca ttgatcactg gagaaaaata tccagaaaca aaagatgaaa agtcacaggt
    21961 gtaatgcttg tggcttttta atttaacgca aagtaggtgg cgtaatgttt ggctttacca
    22021 aacgacacga acaagattgg cgtttaacgc gattagaaga aaatgataag actatgtttg
    22081 aaaaattcga cagaatagaa gacagtctga gaacgcaaga aaaaatttat gacaagttag
    22141 atagaaattt cgaagaacta aggcgtgaca aagaagaaga tgaaaaaaat aaggaaaaaa
    22201 atgctaaaaa tattagagac atcaagatgt ggattctagg attaataggg acgattctaa
    22261 gtacatttgt tatagccttg ttaaaaacta tttttggcat ttaaaggagg tgattaccat
    22321 gcttaaaggg attttaggat atagcttctg ggcgtgcttc tggtttggta aatgtaaata
    22381 acagttaaga gtcagtgctt cggcactggc tttttatttt gattgaaatg aggtgcatac
    22441 atgggattac ctaatccaaa gactagaaag cctacagcta gtgaagtggt ggagtgggca
    22501 aagtcgaata ttggtaagag gattaatata gataattatc ggggcagtca atgttgggat
    22561 acacctaact ttatttttaa aagatattgg ggttttgtaa catggggcaa tgctaaggat
    22621 atggctaatt acagatatcc taagggtttc cgattctatc gttattcatc tggatttgta
    22681 ccggaacctg gagacatcgc agtttggcac cctggcaacg gaataggttc ggacggacac
    22741 accgcaatag tagtaggacc atctaataaa agttattttt atagcgttga ccaaaactgg
    22801 gttaattcta atagttggac aggttctccg ggaagtttag taagacaccc ttatgtaagt
    22861 gttacaggct ttgtgagacc tccatattca aaagatacta gcaaacctag tagtactgat
    22921 acaagttcag catcaaaagc caatgactca acaattactg gcgaagcgaa gaaaccgcaa
    22981 tttaaagaag ttaaaacagt aaaatacact gcttacagca atgttttaga tagagaagag
    23041 cacttcattg accatatagt tgtaatgggt gatgaacgtt cagatattca aggattatat
    23101 ataaaagaat caatgcatat gcgttctgta gacgaactgt atacgcaaag aaataagttt
    23161 ataagcgatt atgaaatacc gcatttatat gtcgatagag aggctacatg gcttgctaga
    23221 ccaaccaatt ttgatgaccc gcgtcaccct aattggctag ttattgaagt atgtggtggt
    23281 cgaacagata gtaagcgtca attcttaatg aaccaaatac aagctttaat acggggtgta
    23341 tggttgttgt caggaacaga taaagaatta tctgaaacaa cgttaaaggt agaccctaat
    23401 atttggcgta gtatgaaaga tttaattaat tacgacttga ttaagcaagg tataccggat
    23461 gacgcaaagt atgagcaagt caaaaagaaa atgcttgaga cgtacatcaa acgagatata
    23521 ttaaaacgag aaaatattaa agaagtaact acaaaaacaa caataagaat tagtgataaa
    23581 acatcggttg acagtgcgtc aacaagagga cccactgcat cagacgaaaa accaagcatc
    23641 gttactgaaa aaagtccgtt cacgttccag caagcactgg atagacaaat gtctaggggt
    23701 aacccgaaaa aatctcatac atggggctgg gctaatgcaa cacgagcaca aacgagctca
    23761 gcaatgaatg ttaagcgaat atgggaaagt aacacacaat gctatcaaat gcttaattta
    23821 ggcaagtatc aaggcgtttc agttagtgcg cttaataaga tactcaaagg gaaaggaacg
    23881 ctagacggac aaggcaaagc atttgcagaa gcctgtaaga aaaacaacat taacgaaatc
    23941 tatttgatcg cgcacgcttt cttagaaagt ggatacggaa caagtaactt cgctaacgga
    24001 aaagatggag tatacaacta cttcggcatt ggcgcttacg acaacaatcc taactacgca
    24061 atgacgtttg caaggaataa aggttggaca tctccagcaa aagcaatcat gggcggtgct
    24121 agcttcgtaa gaaaggatta catcaacaaa gggcagaata cactgtacag aatcagatgg
    24181 aatcctaaga atccagctac gcaccaatac gctactgcta tagagtggtg ccaacatcaa
    24241 gctagtacaa tcgctaagct atataaacaa atcggcttaa aaggtatcta ctttataaga
    24301 gataaatata aataaagagg tgtgtaaatg tacaaaataa aagatgttga aacgagaata
    24361 aaaaatgatg gtgttgactt aggtgacatt ggctgtcgat tttacactga agatgaaaat
    24421 acagcatcta taagaatagg tatcaatgac aaacaaggtc gtatcgatct aaaagcacat
    24481 ggcttaacac ctagattaca tttatttatg gaagatggct ctatattcaa aaatgagccc
    24541 cttattatcg acgatgttgt aaaagggttc cttacctaca agatacctaa aaaggttatc
    24601 aaacacgctg gttatgttcg ttgtaagctg tttttagaga aagaagaaga aaaaatacat
    24661 gtcgcgaact tttctttcaa tatcgttgat agtggcattg aatctgctgt agcaaaagaa
    24721 atcgatgtta aattggtaga tgatgctatt acgagaatct taaaagataa cgcgacagat
    24781 ttattgagca aagactttaa agagaaaata gataaagatg ttatttctta catcgaaaag
    24841 aatgaaagta gatttaaagg tgcgaaaggt gataaaggcg aaccgggaca acctggtgca
    24901 aaaggtgaag caggtaaaaa aggagaacaa ggcgcacccg gtaaaaacgg tactgtagta
    24961 tcaatcaatc ctgacactaa aatgtggcaa attgatggta aagatacaga tatcaaagca
    25021 gaacctgagt tattggacaa aatcaatatc gcaaatgttg aagggttaga agataaattg
    25081 caagaagttg aaaaaatcaa agatacaact ctcaacgact ctaaaacgta tacggattca
    25141 aaaattgctg aactagttga tagcgcgcct gaatctatga atacattaag agaattagca
    25201 gaagcaatac aaaacaactc tatttcagaa agtgtattgc aacagattgg ctcaaaagtt
    25261 agtacagaag attttgagag attcaagcaa tcattaaaca gtttgtatgc agataaaaat
    25321 catagtcata caatcaaaca gattgaagga ttagaaaatg ctttatcaaa aaaatcagac
    25381 ataaatcaca gtcatgatga acgttatctt ttatcatcaa atgcttttac aaaagaggaa
    25441 gcagataaac tttatcaacc tatcggttct tcgcagccgt cactgaatat ttggacaggc
    25501 agtgaaacag aatataatta tttgtatcaa aaagacccta atacacttta cttaattaag
    25561 gggtgatttt atggaaggta attttaaaaa tgtaaagaag cttatttacg aaggcgaaga
    25621 atatacaaaa gtatatgctg gaaatatcca agtatggaaa aagccttcat cttttgtaat
    25681 aaaaccctta cctaaaaata aatatccgga tagcatagaa gaatcaacag caaaatggac
    25741 aataaatgga gttgaaccta ataaaagtta tcaggtgata atagaaaatg tacgtagcgg
    25801 tataatgagg atttcgcaaa ctaatttagg gtcaagtgaa ttaggaatat caggagtcaa
    25861 tagcggagtt gcaagtaaaa atatcaactt tagtaatcct tcagggatgt tgtatgtcac
    25921 tataagtgat gtttattcag gatctccgac attgaccatt gaataatttt aaacgactaa
    25981 tttttagtcg tttttttatt ttggataaaa ggagcaaaca aatggatatt aactggaaat
    26041 tgagattcaa aaacaaagca gtactaactg gtttagttgg agcattgttg ctatttatca
    26101 agcaagtcac ggatttattc ggattagatt tatctactca attaaatcaa gctagcgcaa
    26161 ttataggcgc tatcctcacg ttacttacag gtattggcgt tattactgac ccaacgtcaa
    26221 aaggcgtctc agattcatct atagcacaga catatcaagc gcctagagat agcaataaag
    26281 aagaacaaca agttacgtgg aaatcatcac aagacagcag tttaacgccg gaattaagca
    26341 cgaaagcacc aaaagaatat gatacatcac aacctttcac agacgcctct aacgatgttg
    26401 gctttgatgt gaatgagtat catcatggag gtggcgacaa tgcaagcaaa attaactaaa
    26461 aaagatttta tagagtggtt gaaaacttct gagggaaaac aattcaatgt ggacttatgg
    26521 tatggatttc aatgctttga ttatgccaat gctggttgga aagttttgtt tggattactt
    26581 ctgaaaggtt taggtgcaaa agatatacca tttgcaaaca atttcgatgg actagctact
    26641 gtataccaaa atacaccgga ctttttggca caacccggcg acatggttgt attcggtagc
    26701 aattacggtg caggatacgg acacgtagca tgggtaattg aagcaacttt agattatatc
    26761 attgtatatg agcagaattg gctaggcggt ggctggactg acggaatcga acaacccggc
    26821 tggggttggg aaaaagttac aagacgacaa catgcttacg atttccctat gtggtttatc
    26881 cgcccgaact tcaaaagcga aataacacca cgatcagttc aatctcctac acaagcacct
    26941 aaaaaagaaa cagcaattcc acaacctaaa gcggtagaac ttaaaattat caaggatgtg
    27001 gttaaaggtt atgaccttcc taaacgtggt ggtaatccta aaggtattgt cattcataat
    27061 gacgcaggaa gcaaaggggc gacagcggaa gcttatcgca acggattagt taacgcacct
    27121 ttatcgagat tagaggcagg tattgcacat agttatgtat caggtaacac agtgtggcaa
    27181 gctttagatg aatcacaagt aggttggcat actgctaacc aattaggcaa taaatattat
    27241 tacggtattg aagtgtgtca atcaatgggt gcagataacg cgacattctt aaaaaatgaa
    27301 caggcaactt tccaagaatg cgctagattg ttaaaaaaat ggggtttacc agcaaacagg
    27361 aacacaatca gattacacaa cgaattcact tcaacatcat gtccacacag aagctcagta
    27421 ttacacactg gttttgaccc agtaactcgc ggtctattgc cagaagacaa gcggttgcaa
    27481 cttaaagact actttatcaa gcagattagg gcgtacatgg atggtaaaat accggttgcc
    27541 actgtctcta atgagtcaag cgcttcaagt aatacagtta aaccagttgc aagtgcatgg
    27601 aaacgtaata aatatggtac ttactacatg gaagaaagtg ctagattcac aaacggcaat
    27661 caaccaatca cagtaagaaa agtggggcca ttcttatctt gtccagtggg ttatcagttc
    27721 caacctggtg ggtattgtga ttatacagaa gtgatgttac aagatggtca tgtttgggta
    27781 ggatatacat gggaggggca acgttattac ttgcctatta gaacatggaa tggttctgcc
    27841 ccacctaatc agatattagg tgacttatgg ggagaaatca gttagaatga catagtcatg
    27901 tctatttaag caggtgcgtt acatacctgc tttctattta catttaaaga taaaatgtgc
    27961 tattatttta ctagaacttt ttaacatttc tctcaagatt taaatgtaga taacaggcag
    28021 gtactacggt acttgcctat tttttatgat ataatgtaat tacattacca gtaaccaatc
    28081 tggcttaaaa ccacatttcc ggtagccaat ccggctatgc agaggactta cttgcgtaaa
    28141 gtagtaagaa gctgactgca tatttaaacc acccatacta gttgctgggt ggtttttatg
    28201 ttataatata aatgtgaaat ggtcattctt gaaatgactc ggtcgctact ggcacagact
    28261 gtttaaagtg tcaccacaac atgaactgag aattcatatg acgttgctga cgagcgacaa
    28321 agctctgtgt tcctgaatgg gagtaagttt atgtggtggt acataacaag tcgctgaaat
    28381 atttgcgaca taataaaaca tattatcggt tttattatgt gctgcaggca caccttaacc
    28441 atccatacta gttactgggt ggttgttttt tatgttatat tataaatgat caaaccacac
    28501 cacctattaa tttaggagtg tggttgtttt aatatgtgaa gctaaaataa ctacaaatga
    28561 taccattttt gataccattt tgttgtaaaa cagaaaaaat aaggaaaata aaaaaggtaa
    28621 aaaacgcatt aaatcaacgt ttattgtctc atgaaattta aatgtatata aatttcactt
    28681 cccatggatc attgtaaatg ctaacaggtt gcttcaattt gacgctattc atcgtcttaa
    28741 acttccttct ttctatttgg ttcatatcgg tatgatacca cttcgtatta tcactcgtaa
    28801 caaattatct cttaatttta gttaattgaa aaggggattt ttaaaagtca aaataatttg
    28861 aatgtcataa atatagctaa gattatatcg ctttaacgca atttctgtta ggataataat
    28921 gaaaaagaaa acaaaataaa aggagttaac tttttatgaa tgaacaacaa acaatcgaac
    28981 agataaaagc gcgtttaaat aagtttattg aggatatcga tcatgtaaat cctgatgaag
    29041 tacgtgttga agatatagat gaatggattg gattgttaga tcagcttgaa gaaaaggtta
    29101 aattagtatc taagtaaatg ccacataaga tgtgttaggg ttagatatcg cgacagtcgc
    29161 ttaatatttt ttatatcttg tatgtttaat cactgattta cttgtctata gtaattatat
    29221 caatgatata tagaaaggtg atttgcaatg actaaaaaag tagcaattat tctagcaaac
    29281 gaatttgaag atatagaata ttcaagccct aaagaggcat tagagaatgc aggctttaat
    29341 actgtagtga ttggagatac tgcaaatagt gaagttgttg gtaaacacgg tgaaaaagtt
    29401 actgtcgatg taggcattgc agaagctaaa ccagaagatt atgatgcatt attaattcct
    29461 ggaggatttt caccagatca tttacgtgga gatacagaag gtcgatatgg cacatttgct
    29521 aaatacttta ctaaaaatga tgtaccaaca tttgccattt gtcatgggcc acaaatacta
    29581 atagatacag acgatttaaa aggtcgtacg ttaacagcag tattaaatgt acgcaaagat
    29641 ttatcaaatg caggcgcaca tgtagttgat gagtcagtag ttgtagacaa caatattgta
    29701 acaagtcgag taccagacga tttagatgat tttaatcgag aaatcgttaa acaattacaa
    29761 tagaagtatt gtggttatcg attgttaaaa tttatatatt ttcgtttgaa atgaaatatg
    29821 gattttagtt ttaataaatg aataacaaat aaaaggtcgt ctctattggc atttaatagg
    29881 gatggtcttt tatttttata aaatataaca atatttgaca tgattaatat ttaaaattgc
    29941 aatgatttat ctataatttt ttcaaaaaac aaaaaagtaa gtatgatggc gtatacgatt
    30001 gtaagccctt ggactgattt tcccaaaaag tgtagcctat ttgtgatagt actggtaaac
    30061 tcaaggtata tactaagtga gttttaaaag aaggagcaaa cgcatgaaaa gaagcgatag
    30121 gtactcaaac tcaaatgaac attttgagca tatgaaacac gaacctcact ataatacgta
    30181 ttatcaacca gttggcaaac cgccgaaaaa gaaaaaaagt aaacgaatac tattaaaaat
    30241 attattaacc attctaatca ttatcgcatt gtttattggt atcatgtatt ttttatctac
    30301 acgcgataat gtggatgaac taagaaaaat tgaaaataaa agtagttttg tgtcagctga
    30361 taacatgcca gagtatgtta aaggtgcctt tatttcaatg gaagatgaac gattctacaa
    30421 tcatcatgga ttcgatttga aaggtacaac tagagcttta ttttcaacga ttagcgacag
    30481 agatgtgcaa ggtggtagta ccattacaca acaagttgtc aaaaattatt tttatgataa
    30541 tgatcgttca tttactagaa aagtaaaaga attatttgta gctcatcgag ttgaaaaaca
    30601 atataataag aacgaaattt taagctttta tttaaataat atttactttg gggataatca
    30661 atatacgctt gagggcgcag caaaccatta ctttggaaca accgtgaata aaaatagtac
    30721 aacaatgtct cacataacag ttttacaaag cgctatttta gctagtaaag tcaatgcacc
    30781 tagcgtatat aatatcaata atatgtcaga gaattttacg caacgtgtaa gcacgaactt
    30841 agaaaaaatg aagcaacaaa attatatcaa tgaaacacaa tatcaacagg ctatgtcaca
    30901 attaaatcgt taaatacttg cattcatgtg taagatgctt ggaactataa tgtagaaggt
    30961 ttaattgaaa tgtcataatg ataaagttga attgtttctg ctttataaat tttacagatt
    31021 tgcttgtaat cacactttca ttttaaaaga tgatagtgtg attttttgtt agcatcgaaa
    31081 aatatttaaa gttaaacatt tgctatagga agtggcttat tgaataataa aagagtattg
    31141 tattaaaact taagaaagta acggggtgat ccagtgccga agattactaa aatagaagtt
    31201 caaaagaaaa acaaagaacg gtttaatctt tttttagacg aacaatttga aatgggtata
    31261 gatattgata cattagtcaa atttaattta aaaaaagggc aacaacttga agctgctgac
    31321 atggcagaga ttcaaaagta tgatcattat cgcataggtt taaataaagc aatccaatat
    31381 ttatcatata aaaagagaac tgaaaaagaa gttatacaat atttacaaaa agaagagata
    31441 tcagagcaag cgatttctga agtgattgaa tattgttatc gcgaaaagtt aatcgaccat
    31501 caagattatg cggaaagttt aaaaaataca atgattcgca cgacagataa aggacctaaa
    31561 atttatcaac aaaaactata tcaacttggt atagaaccaa atatcattga aatatttaca
    31621 gaactttata gagaacaaca ggaacttgat gatattatcc aaattgctga aaaaatatct
    31681 aaaacaaaaa aagggccaca aaataaagtt aaagaaaaag taatgcaatc tttaattcaa
    31741 aaagggtttg aaatggaaac cattcatgct gtattgaatg aaatggattt tacacaagat
    31801 gaagcggttt tagacgattt attacaacga gatttagaaa aaatttataa taaaaatcga
    31861 aagaagtaca cgcaacagaa attaatttca aaaactatcg aaggccttat gagaaaagga
    31921 tataaatatg ataaaattaa agctaaatta gaagaaagtg gtattgccga tggaacagaa
    31981 gaaattgagt gagatgtctg agccagaatt aagacacgaa atacaacttt ataaagagaa
    32041 aatgagaaaa gctgagatga atggtatttt aaatgaatat gacgtttatc aaagtaaagt
    32101 aattgttgcc gaaagttact tagtagacag aaaaaagata gaaattggta aaatttataa
    32161 actgactgat ggcagtaatc aatattttaa agtagaaaga ttaaaaggta tttttgcgtg
    32221 ggggtttaga tttaatagcg atgaacccga agaaggatta cctatagcgt tattacaatt
    32281 atagaaggat gaaaatagat gggaagttca attgttttaa agttactaaa agtaacacac
    32341 tactatagga ataaacagaa taagaaatgg tatttacctt ttggatatga tgctgaagat
    32401 atcgatttaa acaatattag tttacatatt tatcaaggag aagcattagg tataattggt
    32461 gaacctgaat cttccaaagc gttggtaggt caattgttgg caggtgcaat taaacctgat
    32521 aaaggtaaag tagtttgtac tgaagatttg ttctacggat atattgaaga tcaatcgtta
    32581 attcatcaaa ctgttgaagc ttatacagcg cagttagttc aactatttcc atatgaaatt
    32641 aatgatcata aagctgaaca gattattcaa tatgcacatt taggtgatta taaaacgaag
    32701 ccggttaacc atatttcgaa agcggcatac gctcaattac tattaagtat tgcacgctca
    32761 tcaaaatcaa atattattat tttaaatcat gttattgact atttaacacc acaatttatg
    32821 gaacgtgcga ttgaattaac aaatgattat attgaaaata atttaacgat tgtgtcaatt
    32881 ggtgatgata ttgataaaat ttcacaagtg agtaactaca tagcttggtt ttcacatggt
    32941 caattaagaa tggaagggtc acttaaacaa gttattccat cttttaaaga acatgaacgt
    33001 gatcgattaa gtctaaactc aaaagaagaa attgaaaact ttgatttaga ttggaaaaag
    33061 aatcgtacaa gaataccaga gatgacctat aatttcaaac gtgttgagcg ctataatcat
    33121 gcaaaaccgc ctaagttttt agtgcgtttt tggactttgg cctcaggtac tattttaggc
    33181 ttagcattga tgatgttgct cattttcaat aatataggaa ttatttcgat aacagatttt
    33241 acgaatcgtg ctacgatgca aaatgaaaat aaagatccat atggcgaaaa gttagcttat
    33301 ggaattgctt ttaatggcag tgtggatatg caaggggata aacaagtcac aattccaaaa
    33361 tatagtgtag ttacaattac tggcgaaaat agtaaaaatt atcgtgttac cgccgataat
    33421 aagacttact atgttagtaa agataaatta gaatatttta acccggcagg tttatatcaa
    33481 acgcatagtt ttaaaaaatt agcaccatat atgaaatcaa attatagtaa ttactatgca
    33541 tactttaata gtcaattaca taaaaagcat agttcagtta taaaaacttt agttcctgat
    33601 gatgataacc gtttcgttgc atccgttaca caacaaccga tacaattact tttcaatgat
    33661 aataatcagt tatacggttt tgtttatcca attgtagata aaaaagaatt aaaagataag
    33721 tttaatatta acaataacat ttggattact aaagttggga atggatattg tattgccaat
    33781 ttgaaagaag acaaatggat ttatattgaa ttgtaggtgt aaagatgcta gataatatta
    33841 ttttatattt taaaaactta ccgcatacta aaaggtatgt aacagaacgt ttaaaacaaa
    33901 gttggaaaag ttttctaatc gtattagctg catgtttaat acttattatt gcaagtgaaa
    33961 cgctattttc ctttagtcat ttgaccgatg ttaaagaggt gagatggtta tttagaatca
    34021 ttgtattgat tgtttttgcg gtagtgatgt tcacaattta tatctcttat catcattata
    34081 tgaatgactt tttagttact aagttattta atatttccgc agcgacgcca gtagttatta
    34141 tgtctatttt aagttttatt atgctagtca ttttgacgat gattagtgca ttggttaaac
    34201 cagtaaactt cgaaacatca tatatagcgc tattctattt tattgtgatg gcaactattt
    34261 ttgtaggatt aatatccgtt acttttggtc ttattcgact gttaactgaa aaaataaata
    34321 tcatatttta tggggtttgt gtattgtgtt tcttattgtt accaattatt ttcataccaa
    34381 atccaaatca tgtatttatc aatcacatcc taatgctaaa tccaatgtat tacattgtta
    34441 atggtatagc acaatctatc atatttggta tatcaagtat ggaaaacatt ccatatcatt
    34501 tttactttat tttattctta tgtttaatag ctgcagtaaa tttcgtatta gcaaggtata
    34561 cgacacacgc aatttataat aaaacatcta aagtgacaca aactgataat caacaggatg
    34621 tttcaaatga tagtacagac gaggcggata cttcttcatg atgtttagct gacctgttgt
    34681 gtaaattaat ctgtgagaat cagaaacaat tagaatatca tctagatatt gttttcctat
    34741 actgattttg atatttcgag tcattaaagg tagtttgtta gcaacaatat aaattttaga
    34801 ttttgtaaaa gcattcatag ttttacatta aaaaaccgga cagagtaaaa atcgttttga
    34861 ttttcattct gcccggttgt tcatttttta tagattaact ttagtgaata ataacttgaa
    34921 attatttagc atacagttta cgttgtaact tatcttctgt aaatacccag ccaatataag
    34981 agtggtctat gacattatcg tttgttacat gtgcaattgc cacaaatgaa taatgatcat
    35041 tttttaaata acgcaaatca atcaaacgaa tttcagtaga accatctgct aacgttgttg
    35101 tttgccaacg atagattgat gaaaagttta aaaaagtacg tatatcttta ttacctttga
    35161 ctttccataa aatggagtct gttgataatg tttgacgttc cactttatca ctaaacacca
    35221 cattcctacc atatgctttt ccaacatagt catgtgcatc agtttgtatc gcgacacgcc
    35281 attccataaa ttttattgtt ggcgcaacaa atactttaac agggtgatgc tcttgttgaa
    35341 ttgcttttaa agcttgttgc ttaattacgg ctctcatttt aaaacgaatc atgtaataaa
    35401 tgattagtaa agcgattata ggaaagaaga ctgcaaatgg atgcaagcct ataacccata
    35461 atacaatacc aatacaaaga actgtgaaaa taatagggtc aaatgtgtta atcacactta
    35521 attgaatcca tttgtttgtg ataggtctaa gcgcttgtgt accataagaa ttgaatatat
    35581 ctacaaagac atgtaaaaat actgcgagct gagcccacat ccatacatga aatgggttgg
    35641 ttccactaaa gaacgtgaat attaaaaatg taattaaaat tggccatagt attgtgaaag
    35701 ggatggaatg cgtgatacct ctatgatgcg aaatatatgt tgcattgtcc tttaatttaa
    35761 gaacagtatc cccatcagga attaatgaac caacgataag ggttgtagct gttgcaccaa
    35821 acgtagaagc cattgctgga tcttgagttg caagtgctgt aaggcccacc ccaattgcga
    35881 tatgtgttgc agtgtccata tcagttcact catttcataa tattatatat actattataa
    35941 tccaatttcg caaataacta aattaactta catactaacc atgattttaa tgtacaataa
    36001 aaacattatg agtaaagaca attaattttg gtgaggaaag ggttttataa atgtatcagc
    36061 agtctagttt taaagaaaat ttgatacact ggtttgatga aaatcaaaga gaaatgccat
    36121 ggcgacaaac gaccaatccg tactatattt ggttaagtga ggtcatgtta caacagacac
    36181 aagttaaaac agttattgac tattatcatc gttttgttga acgatttcca actgtggaag
    36241 ttttgagtca agcttcggaa gatgaagtgt taaagtattg ggaaggctta ggatattata
    36301 gtagagctcg aaattttcat acggcgatta aagaagttca tgataaatat gaaggcttag
    36361 ttcccaaaga tcctgatcaa tttaaagcgt taaaaggtgt tggcccatac acacaagctg
    36421 cagtaatgag cattgcatat aatgtaccac tagcaactgt agacggaaat gtttttcgag
    36481 tatggtctag attgaatgat gactatcgag atattaaatt acaatcgacg aggaaatcgt
    36541 acgaacaaga attattaccg tatgttacta cagaagctgg aacgtttaat caagctatga
    36601 tggaattagg ggcgttaatt tgtacaccaa aaaatccatt atgcttattt tgtccagttc
    36661 aagaaaactg tgaggcattt gataaaggta catttgaaaa gttacctgtt aaatctaaaa
    36721 atgtaagtaa aaaagtaatt gagcaatccg tctttttaat tagaaataat caaggtcaat
    36781 atctgttgca aaagcgtagc gaaaaattat tgcatggtat gtggcaattt cctatgtttg
    36841 aaagtgagca tgctagacgt aaaatgactg aaaaaatcgg tcatgacatt caaccagtag
    36901 aaacacctat ttttgagttg aagcatcaat ttactcattt aacatggaag attaaagtat
    36961 acgccgtttc aggagcaatt aacattgaaa cattaccaga tgacatgatt tggtttgatt
    37021 taagtgatcg agatcaatat acattccctg tacctatgtc aaagatttat caatttataa
    37081 atgggtaaca ttcgatgatt ggtaatatta tcggaaaaca tagtgacatt aattttaaaa
    37141 agtataaatg atatctttaa atctcataga ataacaatgt caaaaagtta aagtgttgat
    37201 atataaaagt gatgatttta tatactttaa atgggacatg taaatctctg ttgtagtact
    37261 tagcaatatt accgagttta attattaagt agtaaaatct tatttcgtaa aaatatgtat
    37321 ttatataata ctatttctga aatatgctat aatttataat ggttaaatta acagaaggtg
    37381 gtgtggagta tggtcagaga atccatacct aaagaagggg aaaacattaa aattcagagt
    37441 tataaacatg atggtaagat tcatcgcgtt tggtctgaaa caacaatatt aaagggtact
    37501 gatcatgttg tcattggtgg aaatgatcat acgttagtga ctgaaagtga cggaagaact
    37561 tggataacac gtgaaccggc aattgtttac tttcactcag aatattggtt taatgttatc
    37621 tgcatgttta gagaagatgg aatttattac tattgcaatt tgtcatcacc atttgtttgt
    37681 gatgaagagg cattaaaata tatagactat gatttagata ttaaagtata tccaaacgga
    37741 aagtatcatt tattagatga agatgaatat gagcaacata tgaatcaaat gaattatccg
    37801 catgatattg atattatttt aagacgcaac gtggacattc ttcaacaatg gatagaacag
    37861 aagaagggcc cattcgcgcc agattttatc aaagtttgga aagaacgtta caaaaaaatt
    37921 agacagtatt aagcaaataa agtgtaaata ctgattaaat catttatatt gacttagtga
    37981 tgtaaagaag tatgataact tttgctgtcg tgtggggaca cagtatccat agattaaatt
    38041 gaatagaata taacatacga ataagacaac gtatttaatc acatgaatat gacagaggtt
    38101 gagatatctt aattttaaaa atgtaaattg taagaagaat ttacatctac aaattatgta
    38161 tccaacctct attcattttt atgcttatga ataggatagg gcaatagatt aggggggatt
    38221 gtatgattaa acgatatttg caatttgtta agccatacaa atatcgtatt tttgcaacga
    38281 ttattgttgg gataattaag tttggtatac caatgcttat accactatta attaaatatg
    38341 caatagatgg cgtgattaat aaccacgcac taacgactga tgaaaaagtt catcatttaa
    38401 ctattgccat tggtatcgca ttatttattt ttgtaatagt gagaccacca attgaattta
    38461 tacgtcaata tttggcgcaa tggacaagta ataaaatatt gtatgatata cgtaaaaagt
    38521 tatacaacca tttacaagct ttaagtgcga gattttatgc taataatcaa gtaggtcaag
    38581 taatatctag agtgattaat gatgttgaac aaacaaaaga tttcatttta accgggttaa
    38641 tgaatatttg gttagattgt ataacaatta ttattgcact atccataatg ttctttttag
    38701 atgtgaaatt gactttagca gcactgttta tcttcccatt ttacatttta acggtgtacg
    38761 ttttctttgg aagattaaga aaattgacac gtgaaagatc tcaagcatta gctgaggttc
    38821 aaggattctt gcatgaacgt gttcaaggta tttcagtcgt taaaagtttt gcgattgaag
    38881 acaatgaagc gaaaaacttt gataaaaaga atactaattt cctaacacgt gcgttgaaac
    38941 atacaagatg gaatgcctat tcctttgccg caattaatac agttacagat attggaccaa
    39001 ttattgtcat cggtgttggt gcatatcttg ctatttctgg atcaatcaca gtaggtacac
    39061 ttgcagcatt tgttggatac ttagagttat tgttcgggcc tttacgtcgt ttagtcgcat
    39121 catttacaac tttaacgcaa agttttgctt caatggaccg tgtattccaa ttaattgatg
    39181 aagattatga catcaaaaat ggtgttggtg ctcaacctat tgaaattaaa caaggtcgta
    39241 ttgatattga tcatgttagt tttcaatata acgataacga agctccaatt ttaaaagata
    39301 ttaatttgag tattgaaaaa ggagaaacag ttgctttcgt aggtatgagt ggtggtggta
    39361 aatcaacatt aattaactta ataccgagat tttacgatgt aacttctggg caaattttaa
    39421 tagatggtca caacattaaa gattttttaa cgggaagttt aagaaatcaa ataggattgg
    39481 tgcaacagga taatatttta ttctctgata cagttaagga aaatatttta cttggtcgtc
    39541 caacagcaac agatgaagaa gtagttgaag cggcgaaaat ggctaatgca catgacttta
    39601 ttatgaactt gccacaggga tatgacactg aagtaggtga acgaggtgtt aaattatcag
    39661 gtggtcaaaa acaaagatta tcgattgcta gaatattttt aaataatccg ccaattctta
    39721 tcttggatga agcaacaagt gcacttgatt tagaaagtga atccattatt caagaagcat
    39781 tagatgtgtt gagtaaagat cgaacgacac ttatcgtagc gcatcgcttg tccactatta
    39841 cacatgctga caaaattgtc gtaattgaaa atggacatat tgttgaaaca ggtacgcatc
    39901 gtgaattgat tgcaaaacaa ggtgcttacg agcatttata tagcattcaa aacttataaa
    39961 gtattagttg tttgacttca gtacaatctt gaagagaaaa tttgtaacag gatggtgggg
    40021 tcataacata gaaaaagcag taagagattt tcttaattga aaataatctt actgcttttt
    40081 taaatttaat ttcgagattc aatattagtt tatctcattg tggcattaat tgataaaatt
    40141 gttttaatgt tataaatcaa agtcttcttc aacaatttca atgtctgcat cagatctatg
    40201 atatgtgaaa aagctaattc ttatgcggtc taaatgctct aaatggtgtc gatactcttc
    40261 gatggctgca acaatttgca taacattggc aaacgaatat tccgtttgat aaggatgatt
    40321 tattaactca tgctgaaatg tggacaataa atcttttttc tgcggattat ctaactcata
    40381 atcaacatgt gtcacattat a
//
LOCUS       DAMQWL010000008        39805 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.008, whole genome shotgun sequence.
ACCESSION   DAMQWL010000008 DAMQWL010000000
VERSION     DAMQWL010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 39805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39805
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.008"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            63..1250
                     /locus_tag="PF788_000455"
     CDS             63..1250
                     /locus_tag="PF788_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000026193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6302744.1"
                     /translation="MSIMRLFTFILSIFIVGMVEMMVAGIMNLMSQDLHVSEAVVGQL
                     VTMYALTFAICGPILVKLTNRFSSRPVLLWTLLIFIIGNGIIAVAPNFSILVVGRIIS
                     SAAAALIIVKVLAITAMLSAPKNRGKMIGLVYTGFSGANVFGVPIGTVIGDLVGWRYT
                     FLFLIIVSIIVGFLMMIYLPKDQEIQRGPVNHETPSHENHVTSKILRPAEVAKYLIIT
                     FLVLIANSVTFVFINPLILSNGHDMSFVSLALLVNGIAGVIGTSLGGIFSDKITSKRW
                     LMISVSIFIVMMLLMNLILPGSGLLLAGLFIWNIMQWSTNPAVQSGVIQHVEGDTSQV
                     MSWNMSSLNAGIGVGGIIGGLVMTHVSVQAITYTSAIIGALGLIVVFTLKNNHYAKTF
                     KSS"
     gene            complement(1312..2664)
                     /locus_tag="PF788_000456"
     CDS             complement(1312..2664)
                     /locus_tag="PF788_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase/lipase family protein"
                     /protein_id="HDG6302745.1"
                     /translation="MKINTTGGQIHGITQDGLDIFLGIPYAEPPVHDNRFKHSTLKTQ
                     WSEPIDATEIQPIPPQPDNKLEDFFSSQSTTFTEHEDCLYLNIWKQHNDQTKKPVIIY
                     FYGGSFENGHGTAELYQPAHLVQNNDIIVITCNYRLGALGYLDWSYFNKDFHSNNGLS
                     DQINVIKWVHQFIESFGGDANNITLMGQSAGSMSILTLLKIPDIEPYFHKVVLLSGAL
                     RLDTLESARNKAQHFQKMMLDYLDTDDVTSLSTNDILMLMAKLKQSRGPSKGLDLIYA
                     PIKTDYIQNNYPTTKPIFACYTKDEGDIYITSEQKKLSPQRFIDIMELNDIPLKYEDV
                     QTAKQQSLAITHCYFKQPMKQFLQQLNIQDSNAQLWLAEFAWHDTSSAHYRSAYHILD
                     MVFWFGNLQILAAHQYPTTAHLKFLSRQMQNDLANFAKSGKMPWPMYHNERRYYRTYQ
                     "
     gene            complement(3272..4909)
                     /locus_tag="PF788_000457"
     CDS             complement(3272..4909)
                     /locus_tag="PF788_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HDG6302746.1"
                     /translation="MNKDKQLHNDKINLSQLVLLGLGSLIGSGWLFGAWEASSIAGPA
                     AIISWVLGFLVIGTIAYNYIEIGTMFPQSGGMSNYAQYTHGSLLGFIAAWANWVSLVT
                     IIPIEAVSAVQYMSSWPWHWAKPMRYLMENGSISTYGLLAVYLIIVIFSLLNYWSVKL
                     LTSFTSLISVFKLGVPMLTIIMLMLSGFDTSNYGHSASTFMPYGSAPIFAATTASGII
                     FSFNSFQTIINMGSEIKNPEKNIARGIAISLSISAVLYIILQSTFITSMPQSMLQHSG
                     WNGINFNSPFADLAILLGINWLAILLYIEAFVSPFGTGVSFVAVTGRVLRAMEKNGHI
                     PKFLGKMNEKYHIPRVAIIFNAIISMIMVTLFRDWGTLAAVISTATLVAYLTGPTTVI
                     ALRKMGPTMTRPFRAKILKVMAPLSFVLASLAIYWAMWPTTAEVILIIILGLPIYFFY
                     EYRMNWRNTKKQIGGSLWIIVYLIVLSILSFIGSKEFKGLNMIHYPFDFIVIIIVALI
                     FYYIGTTSSFESVYFRRATRINTKMRESLNNESKSSH"
     gene            5089..5688
                     /locus_tag="PF788_000458"
     CDS             5089..5688
                     /locus_tag="PF788_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI family protein"
                     /protein_id="HDG6302747.1"
                     /translation="MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWM
                     HPCYTLNNKNVVLIHGFKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTE
                     IQARTEEIKYYLAEAIKAEKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTP
                     GRQHQYIYHIGQAKRSETRQKRVEKYINQILEGKGMHDK"
     gene            5692..5832
                     /locus_tag="PF788_000459"
     CDS             5692..5832
                     /locus_tag="PF788_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302748.1"
                     /translation="MSKAYRLYNNIQDDTKQPMAHAVGCFFRCVCHGQHFDVGIPLQA
                     WE"
     gene            5912..6031
                     /locus_tag="PF788_000460"
     CDS             5912..6031
                     /locus_tag="PF788_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302749.1"
                     /translation="MGGCPSVTMDACALLQKFDFCNNISHFRHFFAIKQPIER"
     gene            6358..7584
                     /locus_tag="PF788_000461"
     CDS             6358..7584
                     /locus_tag="PF788_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6302750.1"
                     /translation="MLSIKHLTKIYSGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTA
                     LRMINRMIEATEGQIEIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPK
                     LLKWTKEEKDKRAKELIKLVDLPESFLERYPAEISGGQQQRIGVVRALAAEQDIILMD
                     EPFGALDPITRDTLQDLVKTLQRKLGKTFIFVTHDMDEAIKLADKICIMSEGKVVQFD
                     TPDNILRHPANDFVRDFIGQNRLIQDRPNDKTVEGVMIKPITIQAEATLNDAVHIMRQ
                     KRVDAIFVVDSNNHLLGFLDIEDINQGIRGHKSLRDTMQQHIYTVQIDSKLQDSVRTI
                     LKRNVRNVPVVDDQQRLVGLITRANVVDIVYDTIWGDSEDTVQTEHVGEDTASSKVHE
                     QHTTNVKVRDIGDDKS"
     gene            7581..8216
                     /locus_tag="PF788_000462"
     CDS             7581..8216
                     /locus_tag="PF788_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6302751.1"
                     /translation="MIEFLHEHGGQLMSKTLEHFYISIVALLLAIIVAVPIGILLSKT
                     KRTANIVLTVAGVLQTIPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQ
                     NIDSNIKEAGKSMGMTQFQLMKDVELPLALPLIIGGIRLSSVYVISWATLASYVGAGG
                     LGDFIFNGLNLYDPLMIVTATVLVTALALGVDALLALVEKWVVPKGLKVSG"
     gene            8233..9174
                     /locus_tag="PF788_000463"
     CDS             8233..9174
                     /locus_tag="PF788_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6302752.1"
                     /translation="MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSE
                     SQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGA
                     LKEAPIKNPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDL
                     AKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDALNSEKLDVAL
                     GYSTDGRIAAYDLKVLKDDKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSE
                     MQRLNYEADGKGKEPAVVAEEFLKKHHYFDKQKGGHK"
     gene            9174..9869
                     /locus_tag="PF788_000464"
     CDS             9174..9869
                     /locus_tag="PF788_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6302753.1"
                     /translation="MEGNLLQQLFNYYVTNFGYLWDLFFKHLLMSVYGVLFAALIGIP
                     LGILLARYTKLSGFVITIANIIQTVPVIAMLAILMLVMGLGSETVVLTVFLYALLPII
                     KNTYTGIASVDANIKDAGKGMGMTRNQVLRMIELPLSVSVIIGGIRIALVVAIGVVAV
                     GSFIGAPTLGDIVIRGTNATDGTTFILAGAIPIAIIAIVIDVLLRFLEKRLDPTTRHR
                     KNQSNHRPQSINM"
     gene            10163..11563
                     /locus_tag="PF788_000465"
     CDS             10163..11563
                     /locus_tag="PF788_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6302754.1"
                     /translation="MDTSKQFRGDNRLLLGIVLGVITFWLFAQSLVNLVVPLQSTYSS
                     DVGTINIAVSLSALFAGLFIVGAGDVADKFGRVKITYVGLILNVVGSLLIIITPLPAF
                     LIIGRIIQGLSAACIMPSTLAIINEYYIGTRRQRALSYWSIGSWGGSGICTLFGGLMA
                     TYIGWRSIFVVSILLTLLAMYLIKHAPETKAEPIKGMKAEAKKFDVIGLVILVVTMLS
                     LNVIITQTSHFGLVSPLILGLIVVFICSLVGFVYYENKIKHPLVDFSIFKNRGYSGAT
                     ISNFLLNGVAGGALIVINTYYQQQLGFNSSQTGYISLTYLITVLSMIRVGEKILSQHG
                     PKRPLLLGSGFTVIGLILLSLTFLPEVWYIISSIVGYLLFGTGLGLYATPSTDTAVAS
                     APDDKSGVASGVYKMASSLGNAFGVAVSGTVYTVLAANLNLNLGGFTGMMFNALLAIV
                     AFLVILLLVPKNQTNL"
     gene            11789..12724
                     /locus_tag="PF788_000466"
     CDS             11789..12724
                     /locus_tag="PF788_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HDG6302755.1"
                     /translation="MKIAIAGSGALGSGFGAKLFQAGYDVTLIDGYTSHVEAVKQHGL
                     NITINGEAFELNIPMYHFNDQPDESIYDVVFLFPKSMQLKEVMEDMKPHIDNETIVVC
                     TMNGLKHEEVIAQYVAQSQIVRGVTTWTAGLESPGHSHLLGSGPVEIGELVDEGKENV
                     IKVADLLNEAELNGVISKDLYQSIWKKICVNGTANALSTVLECNMASLNESSYAKCLI
                     YKLTQEIVHVATIDNVHLNVDEVFEYLVDLNEKVGAHYPSMYQDLIVNNRKTEIDYIN
                     GAVATLGKQRHIEAPVNRFITDLIHTKESQRHAQD"
     gene            13046..13897
                     /locus_tag="PF788_000467"
     CDS             13046..13897
                     /locus_tag="PF788_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDG6302756.1"
                     /translation="MSKIFVTGATGLIGIKLVQRLKEEGHEVAGFTTSENGQQKLAAV
                     NVKAYIGDILKADTIDQALADFKPEIIINQITDLKNVDMAANTKVRIEGSKNLIDAAK
                     KHDVKKVIAQSIAFMYEPGEGLANEETSLDFNSTGDRKVTVDGVVGLEEETARMDEYV
                     VLRFGWLYGPGTWYGKDGMIYNQFMDGQVTLSDGVTSFVHLDDAVETSIQAIHFENGI
                     YNVADDAPVKGSEFAEWYKEQLGVEPNIDIQPAQPFERGVSNEKFKAQGGTLIYQTWK
                     DGMNPIK"
     gene            complement(13989..15485)
                     /locus_tag="PF788_000468"
     CDS             complement(13989..15485)
                     /locus_tag="PF788_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HDG6302757.1"
                     /translation="MTTKKLYFLSISIIILVAISIAIYITLNSNTKTRLTNDSQQQID
                     TIIEHDLQKGHIPGASILIVKNGKVFLNKGYGYQDVDKKVKASPTTKYEIASNTKAFT
                     GLAILKLAQEGRLNLNDAVSKHVPHFKMNYNGQNETITIKQLLAQTSGIPSDITSEDS
                     VTSKNNRLNDVTRAIMGDELHHKPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSW
                     LKPLHMTHTSFKQTNYKSKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEH
                     WIKFQLNPPDKYKSLVQQSHKNLSSTIGEPNANAYASGWFTNNDEHLVFHSGTLDNFS
                     SFILLNPKQNYGIVVLANLNSEYVPKLVEHLNTQIVNHKRYSTVASMLNQYKDQFNIV
                     TVLMTTLILLAFIFSAYRAWQMRHGQILLRRSKRIAVLSWLSLCICIALALILYALPY
                     LILGSNNWSFVLTWLPIEIKLALITTLIALFSTLIVILLFLHTKITKT"
     gene            15717..17546
                     /locus_tag="PF788_000469"
     CDS             15717..17546
                     /locus_tag="PF788_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HDG6302758.1"
                     /translation="MFNQFKRLIIGQPKKNRELKDEKISKFKGLAILSSDALSSVAYG
                     PEQILITLSVVGAVATWYTLPIAGAVLILLAALIMSYRQIIYAYPKGGGAYMVSKTNL
                     GEKWGLLAGGSLLVDYILTVAVSISSGADAFVAAFPSLYGHKVLIACLLVLFILILNL
                     RGLTESATVLSYPVYLFIIGLVILIFIGTFRVATGDIQPHMHASVGTAVPGVTLFLLL
                     KAFSSGASSLTGVEAISNAVTNFREPSAKNAVKTLIAMGSILAFLLVGIVGLAYVYGI
                     LPQTETTVLSQLAMQIFGDNAAFYFVQATTVMILVLAANTGFTAFPMLAASMSKDKYM
                     PRMFTVRGDRLGYSNSIIILGVLAIILIIVFDGMTEDLIPLYAVGVFIPFTLAQFGMV
                     IKWIHERPKNWLSKLSVNLLGGIVTFIVFMILLITKFSQVWPILIFLPFVVIFFLKIN
                     KHYRDIAEQLRSDIDVLNVDVVDRNLAIVPITSITTAVDKSIYYAQMLANNDVIAVHV
                     SFGDEDEKAFQEKWKRHFPDVRLVILHSEYRSIIRPISRFIDKINRKANDQNYMITVV
                     IPEFITKKRWHNLLHNQTSLRMKLYLIYQKNVNVCTIPFKLKK"
     gene            complement(17686..19764)
                     /locus_tag="PF788_000470"
     CDS             complement(17686..19764)
                     /locus_tag="PF788_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDG6302759.1"
                     /translation="MALLEAFLIFIFAVIISSVINNRFPQIPTAFIQIALGVVIFIIP
                     IQVDFQFNSEVFMFAVIAPLLFVEGTHVSRTKLLEYRKPILLMSMALVFATVVGVGYF
                     IHWIWPALPMPAAFAIAAILCPTDAVAVSAITRGKLLPKGSMTILEGESLLNDAAGII
                     SFKIAVTALVTGTFSLFQAVEQFIISTILGVLIGAIIGFVVVRIRIDLTANKGLKDNN
                     TLTFIQLLTPFVVYFLAEEVHASGIIAVVIAGLIHGLERDRLIRAQTELQMNYHQIWN
                     TFSYALNGFVFVVLGFMIPTVVIDIFQTEPDNFSFLIVITILIAIAIYACRFVWVYFW
                     YKDFYFPKNIQSYLDEEHDSHETPPSRVRYAFIMTMCGIHGTISLSMALTLPFIITKG
                     QAFEYRNDLLFIASFMVLISLILAQIVLPLITPSAEDTTFKGMTYQSAKIFIVQKVIQ
                     HFKNESKKDKNDTNYRPVLNQYYGELLFLLNSEPDNQNTKELKRLEDIAKVIETSTLE
                     RLIDKGKATYQDINNYRNIVELTETHRTASFVEKFANFFKMLWLRLKAMKHYKALNKE
                     SKKQEFENSFKDVQKIMRIVNHNIILRLKEEQNSTNVLEVSLVINHYYDMSRSLKWRA
                     QRRKERQENSNQIIPQAMFHNHKLEALYLQRHLLDELIRKNKINNIVAAQIRENINYN
                     EIVLSLQSKH"
     gene            complement(19902..21311)
                     /locus_tag="PF788_000471"
     CDS             complement(19902..21311)
                     /locus_tag="PF788_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDG6302760.1"
                     /translation="MARKLHRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLF
                     TYMIIGVVLFAFMRALGELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLCWIVSSM
                     SDLTAMGQYFAFWYPQVPNWITVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIIA
                     MVIVGLVLIFFSFKTHYGHASFTNLISHGGMFPGGTFGFLMSFQIAVYSFIGIELIGV
                     TAGETKDPEKTLPKAINNVPIRILLFYIGGLLVIMSVIPWNDIDPNSSPFVKLFTLIG
                     VPFAAGVVNFVVLTAAASATNSGIYSNSRILFGLSQQGLGPKVLNKTNSHGVPYLSML
                     VSSIALLIAALLNYIFPNAIQLFIYVTTLSTVLFLVVWAMIIVAYLMYLKKHPEAHKN
                     SKFKLIGGKPIAYIILAFFFFVFILLFFSDETRAAIYISPFWFIFLFFFYKKYKTNAE
                     KLAYEQRQNDSGHFRYDNQ"
     gene            21597..22403
                     /locus_tag="PF788_000472"
     CDS             21597..22403
                     /locus_tag="PF788_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDG6302761.1"
                     /translation="MKIGTIADLHIDRHNKKTSEDYLEALVEIVKYKKLDILLIAGDI
                     SNHYQLTHQFITQLTKQLDIPVKFVPGNHDLWEVESMTTQDIWNNYKSMSQCLVGKPF
                     IVNEEWAIIGHTGWYDYSFAAQRFSLDELQKGKHYGATWQDKERISWGISDQNLSKIA
                     AEQVKKDILEVGNRRVILVTHVVTHPDFIVPMPHRIFDFYNAFIGTSDFNPLYAMFDI
                     PYSIMGHVHFRKSVIDDGRCYLCPCLGYPRQWRSEDIYQEINETIQIIEI"
     gene            complement(22466..23122)
                     /locus_tag="PF788_000473"
     CDS             complement(22466..23122)
                     /locus_tag="PF788_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001080277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HDG6302762.1"
                     /translation="MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEI
                     MRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDL
                     KGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPL
                     WSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
                     "
     gene            23235..23708
                     /locus_tag="PF788_000474"
     CDS             23235..23708
                     /locus_tag="PF788_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDG6302763.1"
                     /translation="MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIA
                     DLQLKNNGDLAGILGLCIPELDGKMSYMIAVTGDNSADIEKYDVITLASSKYMVFEAQ
                     GAVPKAVQQKMEEVHHYIHQYQADTVKSAPFFELYQDGDTTSEKYITEIWMPVKG"
     gene            complement(23831..25042)
                     /locus_tag="PF788_000475"
     CDS             complement(23831..25042)
                     /locus_tag="PF788_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HDG6302764.1"
                     /translation="MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDF
                     GSTTSEIQLTLSFTMIGLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQL
                     PLFLTLRFIQGLTGGGVIVIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGL
                     ALSVATWRSIFTILTIVALIILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAF
                     IIPMLLQGLTYVMLFSYSSASPFITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLV
                     EKLHRHILLIILTIIQVVGVALIILTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMA
                     MEERTGGSGNASSLLGLFQFILGGAVAPLVGLKGEFNTSPYMIIIFITAILLVSLQII
                     YFKMIKKQHVA"
     gene            complement(25224..25883)
                     /locus_tag="PF788_000476"
     CDS             complement(25224..25883)
                     /locus_tag="PF788_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302765.1"
                     /translation="MKRTDKYRDSYQYDNQNQNHRRQSEDASYRQQYAKGDPEEHPER
                     YYNGRDYRREQILEEENEKSRRSKKWLYIIIAILLIIVAIFVTRALLNNDSDKVSNDP
                     KVSQNYKKQVENQDGQINQQVDNAKENIKNNQKTDDIIKNLQNQIDNLKQQEQNKADS
                     KLTQFYQDQINKLTEANNALKNNASQGKIESMLNDINTKFDSIKSKLESLFKDDNGGA
                     N"
     gene            complement(25943..27085)
                     /locus_tag="PF788_000477"
     CDS             complement(25943..27085)
                     /locus_tag="PF788_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDG6302766.1"
                     /translation="MQLQKIVIAPDSFKESMTAQQVGNIIKQAFTNVYGNTLHYDIIP
                     MADGGEGTTDALMHATGATKYTVIVNDPLMRPIEACYARADEQQIAIIEMAAASGLDL
                     LEKEERNPLYTSSYGTGELIKDALNHGAKTIILGIGGSATNDGGTGMLSALGVKFTDV
                     NGDLLQMNGANLAHIAQIDITNLDSRLKEVTFKVACDVSNPLLGENGATYIYGPQKGA
                     DAKMIPKLDFAMSHYHDKIKMCTGKSVNQIPGSGAAGGMGAALLAFCETTLTKGIDVV
                     FDITDFHQRIKDADLVITGEGRMDYQTIFGKTPVGVALAAKQYHIPVIAICGSLGENY
                     QHVYDFGIDSAYSIISSPSTLEDVLQNSEQNLLNTATDIARILKLQ"
     gene            27353..27739
                     /gene="gtxA"
                     /locus_tag="PF788_000478"
     CDS             27353..27739
                     /gene="gtxA"
                     /locus_tag="PF788_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase GtxA"
                     /protein_id="HDG6302767.1"
                     /translation="MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLLHIEYMISHI
                     TGFLVAFVISYYLNCYFVYRVKPTWRKFISFPITQIVNVSLQTVLLYVFVSWLNLPAE
                     IAPFAGLIITIPITFILSKWILKDSN"
     gene            27873..27980
                     /locus_tag="PF788_000479"
     CDS             27873..27980
                     /locus_tag="PF788_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Fst family toxin"
                     /protein_id="HDG6302768.1"
                     /translation="MFNLLINIMTSAISGCLVAFFAHWLRTRNNKKGDK"
     gene            28608..30371
                     /locus_tag="PF788_000480"
     CDS             28608..30371
                     /locus_tag="PF788_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6302769.1"
                     /translation="MNNQTNWIKILSGFASDSKWKIMLSILLSIISVFSGLVPYWAVF
                     KIILMMINNTYTINSIMVYIFIALIAYISQVCCFGASTMLSHITAYEILSEIRKKLAQ
                     KLMRLPLGVVESKKIGELKNIFVDKVETIELPLAHMIPEVIGNLLLSAAIFLYIMLID
                     WRMASALLVTIPISIFAFKKVMSGFNETYAEQMKSNNYMNSAIVEFIEGIEVIKTFNQ
                     SQSSYKKYKDAVDNYKIHTLNWFKNTWGYMNLGASVLPSTFLGILPVGMYLISINQLN
                     YAEFFLCIVLSLGVVAPIKNFTNYVNHLKSIQYALTEVNQILSLEELVLSTKFKKPQH
                     YEIAFNNVGFSYNKDKDDLVFKHLSFTVPENNFTAIVGASGSGKSTIAKLISRYWDVT
                     SGEITIGGINIKDIESKQLNDLVGFVGQDNFLLNLTFKENIKLGNPEATDEAVEKAAK
                     LAQCHEFIEKLPDGYDTNVGTVGDKLSGGEKQRVTIARMILKDAPIIVLDEATVYVDP
                     DNEQKIQEALNVLTQDKTLIVIAHRLSTIQHADQIIVLGKQQILEKGSHHLLLKLNGN
                     YKKMWDTHMHTKDWGINTGHN"
     gene            30396..32129
                     /locus_tag="PF788_000481"
     CDS             30396..32129
                     /locus_tag="PF788_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6302770.1"
                     /translation="MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIF
                     NNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKL
                     KNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDVVVNGYILITVLILSLLVVSWQ
                     VSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKEN
                     TSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLP
                     TLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNEN
                     IAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIR
                     IDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCH
                     DFIMSLPEGYQTMLNEKGSNLSGGEKQRISIARAILKDAPIIILDEATASIDPENEQL
                     IQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFI
                     RIKSKSAGWKL"
     gene            32360..32527
                     /locus_tag="PF788_000482"
     CDS             32360..32527
                     /locus_tag="PF788_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302771.1"
                     /translation="MQLLILTDIFYRIAVYICPNSLRSLSHFNSKVKILPKFIVILRS
                     LNSCFLEKHAP"
     gene            32581..33267
                     /gene="bioD"
                     /locus_tag="PF788_000483"
     CDS             32581..33267
                     /gene="bioD"
                     /locus_tag="PF788_000483"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDG6302772.1"
                     /translation="MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQ
                     DGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDK
                     EFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDY
                     VNQNVSASNFLIMNRYTDSYIEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLI
                     GVKNELHTTT"
     gene            33245..34603
                     /gene="bioA"
                     /locus_tag="PF788_000484"
     CDS             33245..34603
                     /gene="bioA"
                     /locus_tag="PF788_000484"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDG6302773.1"
                     /translation="MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDT
                     NGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEI
                     TPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAV
                     SVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIA
                     GFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHED
                     VQPDIMCLGKAITGGYLPLAATLTSKKIYNAFLSDSHGVNTFFHGHTYTGNQIVCTVA
                     LENIRLYEKRKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKT
                     PLEIEKVERIVRNCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDR
                     KC"
     gene            34605..35612
                     /gene="bioB"
                     /locus_tag="PF788_000485"
     CDS             34605..35612
                     /gene="bioB"
                     /locus_tag="PF788_000485"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDG6302774.1"
                     /translation="MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYF
                     GKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGT
                     YCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYN
                     HNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFAL
                     KEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNL
                     RSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNEVSRA
                     N"
     gene            35590..36705
                     /locus_tag="PF788_000486"
     CDS             35590..36705
                     /locus_tag="PF788_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDG6302775.1"
                     /translation="MKFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSND
                     YLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILN
                     SGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLEK
                     YPNQNIPKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGV
                     DILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLIN
                     ADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFT
                     SYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED"
     gene            36716..37408
                     /locus_tag="PF788_000487"
     CDS             36716..37408
                     /locus_tag="PF788_000487"
                     /EC_number="6.2.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxyhexanoate--CoA ligase"
                     /protein_id="HDG6302776.1"
                     /translation="MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENG
                     QPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETV
                     YTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPY
                     VKGELCVSDDLTYTTGYFAAAKIGYHRLFDIKPVNTRYGGRIIFVDDCIDLNHYISFL
                     ESTPKQVVYETV"
     gene            37419..37886
                     /locus_tag="PF788_000488"
     CDS             37419..37886
                     /locus_tag="PF788_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueT transporter family protein"
                     /protein_id="HDG6302777.1"
                     /translation="MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLIL
                     AFFGIKKYFLGGLLSSLLLLVFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLAS
                     VLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR"
     gene            complement(37938..38915)
                     /gene="hlgB"
                     /locus_tag="PF788_000489"
     CDS             complement(37938..38915)
                     /gene="hlgB"
                     /locus_tag="PF788_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-component gamma-hemolysin HlgAB/HlgCB subunit
                     B"
                     /protein_id="HDG6302778.1"
                     /translation="MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTL
                     YKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKL
                     YWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNG
                     NTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNEL
                     FLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMD
                     LYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK"
     gene            complement(38917..>39805)
                     /gene="hlgC"
                     /locus_tag="PF788_000490"
     CDS             complement(38917..>39805)
                     /gene="hlgC"
                     /locus_tag="PF788_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bi-component gamma-hemolysin HlgCB subunit C"
                     /protein_id="HDG6302779.1"
                     /translation="NPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQF
                     DFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSL
                     INYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQ
                     NSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFN
                     PSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNY
                     TVKYEVNWKTHEIKVKGQN"
BASE COUNT        13411 a         5814 c         7399 g        13181 t
ORIGIN      
        1 ttaataaatc gttattctaa gggaaatgaa tatcggaaat tttgtttgaa aggagtttta
       61 aattgtcaat catgcgacta tttacattca ttttaagtat ttttatcgta ggaatggttg
      121 aaatgatggt tgcaggaatt atgaacttga tgagtcagga cttacatgta tcagaagctg
      181 tcgttggtca attagtgaca atgtacgctt taacatttgc gatatgtgga cctattctgg
      241 ttaaattaac gaaccgtttt tcatcaaggc ctgtattatt atggacatta cttatattta
      301 tcattggtaa tggcattatt gctgtagcgc caaatttttc aatattagta gttggtagaa
      361 ttatctcatc tgcagcagca gcactaatta tcgtaaaagt attagctatt acagcgatgt
      421 tatcagcacc taaaaatcgt ggtaaaatga ttggacttgt ctatacaggg tttagtggtg
      481 ctaatgtttt tggtgtacca attggaacgg ttatcggcga tttagtaggt tggcgctata
      541 catttctatt cttaattatt gtgagtatta ttgttggctt cttgatgatg atctatttac
      601 cgaaggatca ggaaatacaa cgaggccctg tgaatcatga gacaccatct catgaaaatc
      661 atgttacttc gaaaatatta agacctgctg aagtagcaaa atatttaatt attacgtttt
      721 tagtattgat tgcaaactca gtgacattcg tctttataaa tccacttatt ttatctaatg
      781 gtcatgatat gtcattcgtt tcattagcac ttctagtaaa tggaatcgct ggcgttattg
      841 gaacatcatt aggtggtata ttctccgata aaattacaag taagcgttgg ttaatgattt
      901 ctgtttctat ttttatcgtc atgatgttac ttatgaattt aatcttacct ggttcaggtc
      961 tattgttagc aggactattt atttggaata tcatgcaatg gagtactaat ccagcagtgc
     1021 aaagcggtgt gattcaacat gttgaaggcg acacaagcca agtaatgagt tggaacatgt
     1081 ctagtttaaa cgctggtatt ggtgttggag gcattattgg aggcttggtc atgacacatg
     1141 tttctgttca agctatcaca tatacgagtg ccatcattgg cgcattagga ttaatcgttg
     1201 ttttcacatt gaaaaataat cattatgcta aaacatttaa atcatcataa ttctcatatg
     1261 aaaagcacgc ctgctatcaa attcaggtgt gcttttttag atgcgataac gttattgata
     1321 tgtgcgataa tagcgacgtt cattatgata catcggccaa ggcattttac cgcttttagc
     1381 aaaattagct aaatcatttt gcatttgtcg acttaaaaat ttaaggtgag cagttgttgg
     1441 atattgatgt gctgctaata tttgtaagtt tccgaaccaa aataccatat ctagaatatg
     1501 gtaagcactg cgatagtgtg cgctagaagt atcatgccat gcaaattcag caagccatag
     1561 ttgtgcgttt gaatcttgta tattgagttg ttgtaaaaat tgcttcatcg gctgtttgaa
     1621 ataacaatgt gtaatcgcta aagattgttg cttcgccgtc tgaacatctt cgtattttaa
     1681 aggaatatca tttaattcca taatgtcgat aaagcgttgc ggcgataatt ttttctgttc
     1741 actagtaata taaatatcgc cttcatcttt tgtataacat gcaaaaattg gtttcgttgt
     1801 tggataatta ttttgtatat aatctgtttt aataggcgca tatattaaat caagcccttt
     1861 agaaggtcct cgagattgtt ttagcttcgc catcagcata agaatatcat ttgtcgataa
     1921 tgatgtaaca tcatctgtat ctaaataatc gagcatcatt ttttggaaat gttgtgcttt
     1981 attgcgtgca ctctcaaggg tgtctaatcg tagtgcgcca cttagtagaa cgactttatg
     2041 gaagtatggc tcaatgtcag gtattttaag taaagtcaaa atgctcatac tgcctgcaga
     2101 ctgacccatt aaagtaatgt tattagcgtc gccaccgaag gattcaataa attgatgcac
     2161 ccattttatg acattgattt gatctgaaag gccattattg gaatgaaaat ctttattaaa
     2221 atatgaccag tctaaatatc ctaatgcgcc taaacgataa ttgcatgtaa taacgataat
     2281 gtcgttattt tgtactaaat gtgccggttg atagagttcg gctgtaccat gaccattttc
     2341 aaaactacca ccataaaaat aaatgatgac aggtttcttc gtctgatcat tatgttgttt
     2401 ccaaatattt agatataaac agtcttcatg ttcagtaaaa gttgtagatt gtgaggagaa
     2461 aaaatcttct aatttgttgt ctggttgcgg tgggatgggt tgtatttcag ttgcatcaat
     2521 tggctctgac cattgtgttt ttaacgtaga atgtttaaag cgattgtcat gaactggtgg
     2581 ttctgcataa ggaatgccta agaagatatc taaaccatct tgtgtaatac catgaatttg
     2641 accacctgta gtattaatct tcatatttat taacctcctt tatcatcccc aatttaatca
     2701 taccacggtc tatagatgat aggtgacaag tataacaaga caattttgtg actgaatcag
     2761 acgagcttga tatctgtttt aactcaaacc attttcagca ttatatgatg tacttctacg
     2821 ggagtgggac agaaatgata aagagccaca aatgatttat tatgtagtgg ttcttataca
     2881 ttagccacag ctaatgtgta cttaaaaata tgaatacatg agtaaaactc atgcataaga
     2941 aatactaatt tctatagaaa aagtatttct ttatcgtcgt cccaccccaa cttgcattgc
     3001 ctgtagaatt tcttttcgaa attctctgtg ttggggcccc tgactagaat cgaaaaaagc
     3061 ttgttacaag cgcattttcg ttcagtcaac tactgccaat ataacttcgt agagcataga
     3121 acattgattt atgtcccagc ctgatcatca tcttgttatg ttagttattt ataaccgatt
     3181 ttcaaaataa aaaaccaacc aagatgttga aatcaatggt tggttaatgt gtgtgtgttg
     3241 aaatcatata tggcactgta ttttaaaata tttaatgaga tgactttgat tcattattta
     3301 gtgactcacg catcttcgta ttgattcgtg ttgcgcgacg gaaatagacg ctttcaaatg
     3361 aactcgttgt accgatgtaa tagaagataa gtgccacaat aataataacg ataaagtcaa
     3421 atggatagtg aatcatattt aagcctttaa attctttgct tcctataaat gacagtattg
     3481 atagcacgat taaatataca ataatccata agctaccacc aatttgtttc tttgtattac
     3541 gccaattcat acgatattca tagaagaagt agattggtaa tccaagtata atgattaaaa
     3601 taacttcagc cgttgttggc cacattgccc aatatatagc taatgaagct aatacaaatg
     3661 ataatggtgc cattactttt aaaatttttg ctctaaatgg acgagtcatt gttggtccca
     3721 tttttcttaa tgcaatcact gtcgttgggc cagttaaata ggctactaaa gttgcagtag
     3781 aaataactgc tgctagcgta ccccaatctc taaataatgt aaccataatc atactaatga
     3841 tggcattaaa gatgattgct acacgtggga tatgatattt ttcattcatc ttcccaagaa
     3901 atttagggat atgtccattt ttctccattg ctcgtaaaac tcgacctgta acggcgacaa
     3961 atgacacgcc agtaccgaat ggtgatacaa aagcttcaat gtatagtaaa attgcgagcc
     4021 aattaattcc taataagata gctaaatcag caaatggtga attgaagttg atgccattcc
     4081 atccactatg ttgtaacatt gattgaggca tagaagtgat aaacgtactt tgtaaaatga
     4141 tgtacaacac tgcactgatt gacagtgaga tagcgatgcc tcttgcgata tttttttcag
     4201 gatttttaat ttctgaaccc atattaataa ttgtctggaa tgaattgaat gaaaaaataa
     4261 tccctgatgc tgttgttgca gcaaaaatcg gtgcacttcc gtaaggcata aatgtgcttg
     4321 ccgaatggcc gtaatttgaa gtgtcgaatc ctgatagcat caacatgatg atggttaaca
     4381 tgggtacgcc taatttaaat acagaaatta aactcgtaaa tgatgttaaa agttttacgg
     4441 accaatagtt taataatgaa aaaataacaa tgatgagata tacagctagc aatccgtatg
     4501 tgctaataga gccattttcc attaaatatc tcattggttt cgcccaatgc cacggccaag
     4561 aactcatata ttgaacagct gacacagctt cgataggtat tattgtcacc aaagacaccc
     4621 aattcgccca agcagcaata aagcctaata atgagccatg tgtatactgg gcatagttac
     4681 tcatgccacc tgattgagga aacattgtgc cgatttcaat gtagttatag gcaatggttc
     4741 caatgactag gaatccaaga acccatgata tgattgctgc tggtccagct attgatgatg
     4801 cttcccacgc accaaatagc caaccagatc ctattaaaga gcctaaccct aataagacta
     4861 attgggatag attgattttg tcgttgtgca attgcttgtc tttattcata aatactcctt
     4921 cgttattgcc aaaaatacaa aaaataatat gcgacaatta tacgcttatt ataataatag
     4981 tcaaatgcat tttttgtaag aacgcaaaag catttgtaaa attagttttt tataaaatta
     5041 ggatatataa tacaatgtgt attgaaaaac aaaatggaag tgatgactat gagtgagaaa
     5101 caatcaaatg aacaagttga agcattttta aataaagaga gtcaatggca agaagaatat
     5161 aaatatttga gagcgttaat ctttaatgaa acagaattag aggaagcgta taaatggatg
     5221 catccttgtt acacgttgaa taataaaaat gtagtactta tccatggctt caaaaattat
     5281 gttgcactat tatttcataa aggtgccatt ttggaggata aatatcatac actcattcaa
     5341 cagactgaaa aggtgcaagc agctcgtcag ttacgatttg aaaatttaac agagattcaa
     5401 gcacgtaccg aagaaattaa atattatcta gccgaagcaa ttaaagctga aaaagctggt
     5461 aaaaaagttg aaatgaagaa aacagaggaa tatgttattc ctaaagagtt agaagctaag
     5521 ttcgaagaaa tgccacagtt agagtcttca ttttataaat taacgccagg cagacaacat
     5581 caatatatat atcatattgg acaagctaaa cgcagtgaaa caagacaaaa gcgtgttgaa
     5641 aagtatatta accaaatact agaaggtaaa gggatgcatg ataagtaatt aatgagtaaa
     5701 gcataccggt tatacaacaa catacaagat gacacgaaac aaccaatggc tcatgctgtt
     5761 ggttgttttt ttaggtgtgt ctgtcatggg caacactttg acgttggaat tccgttacag
     5821 gcttgggagt agaaaatgtt agcaaaaggc aagggtgtct acaatgaatg atgaagatat
     5881 taaaatataa ggatgacttt gtgagtggcg gatgggcggt tgtccgtctg taacaatgga
     5941 tgcgtgtgca ttattacaaa aattcgactt ttgtaataat atttcacatt ttcgacactt
     6001 ttttgctata aaacaaccaa ttgagcgata ataaattcgc ttttaaaaaa tatgagttat
     6061 ctatttagtt gccaaagata aaataataat gtttaataac atcatataga gtatgttagt
     6121 tttaaatgtc gaatatacga atgtgcaaac aaagtaatcg gtagaaattc aacatacata
     6181 gcgccgttta ctgttaagta ttcacattac agatgaaaaa tataaaattc tacataatca
     6241 agaccatgat gtgtacttgt ttaacttatg actctatttg tttaacaatt gcgataatgg
     6301 tctttttatt ttatgcgtat cattcgtcat attttttatg aggaaggaga aatgattatg
     6361 ttaagtatta agcatttaac gaaaatttat tctggtaata aaaaggcagt agatgacatc
     6421 tctttagata ttcaatctgg ggaatttatc gcatttattg gaaccagtgg aagtggcaaa
     6481 acgactgctt taagaatgat aaaccgtatg attgaagcga cagaaggaca aattgaaatt
     6541 gatggtaaag atgttcggag tatgaatcct gtcgaattgc gtagaaatat tggctatgtt
     6601 attcaacaaa ttggcttaat gcctcatatg acgattaaag agaatattgt gttggtaccc
     6661 aaattgttga aatggactaa agaggaaaag gataaacgtg caaaggaatt aattaaactt
     6721 gtggatttac cggagtcatt tttagagcgt tatccagcag aaatatcagg tgggcaacaa
     6781 caacgtatcg gtgttgtaag agcacttgcg gccgaacaag atattatttt aatggatgaa
     6841 ccttttggtg cattggatcc tattacgaga gatacgttac aagatttagt taaaacgtta
     6901 caacgaaaat taggcaagac gtttatcttt gtaacacatg atatggatga agcgattaaa
     6961 ttagcagaca aaatttgtat tatgtcagaa ggtaaggtgg tgcaatttga tacgccagac
     7021 aatattttaa gacatcccgc aaatgatttt gtacgtgatt ttataggaca aaatagactg
     7081 attcaagacc gtcccaatga caagactgta gaaggtgtaa tgattaaacc aatcacgata
     7141 caagcagaag caacactgaa tgacgccgtt catattatga gacaaaaacg tgttgatgct
     7201 atttttgtag tagatagtaa taaccattta ctaggtttct tagacattga agatataaat
     7261 cagggtatac gtggacacaa aagtttacga gacaccatgc aacaacatat ttataccgtt
     7321 caaattgatt ctaaattaca agattctgta cgtacgattt taaaaagaaa cgttaggaat
     7381 gtacctgtcg tagatgatca acagcgttta gtaggactga ttacgcgtgc caatgttgtt
     7441 gatattgtat atgacacgat ttggggcgat agtgaggata cagtgcaaac agaacatgtg
     7501 ggggaagaca ctgcgtcctc aaaagtgcat gagcaacaca ctactaatgt caaagtacgt
     7561 gacataggag atgataaatc atgattgagt tcctacatga acatggtgga cagttgatgt
     7621 cgaaaacact ggaacatttc tatatttcta tagtggcatt attacttgcc atcattgttg
     7681 cagtacctat aggcatttta ttatcaaaaa caaagcgaac tgccaatatt gtattaactg
     7741 tggcaggtgt cttacaaact attccaacac tagctgtact tgctattatg ataccgattt
     7801 ttggtgttgg taaaacgcct gcaattgtag cgctatttat ttatgtatta ttacctattt
     7861 taaataacac ggtactcggt gttcaaaata ttgatagcaa cattaaagaa gctggaaaaa
     7921 gtatgggaat gacacaattt caattgatga aggatgttga attgccgtta gcattgccgc
     7981 ttatcattgg tggcattcgt ttgtcatctg tgtatgtaat tagttgggct acacttgcaa
     8041 gttatgtagg tgcgggtgga ttaggtgatt tcattttcaa tggtttaaat ttatatgatc
     8101 cactgatgat tgtaactgca acggtactcg ttactgcact agcattaggt gttgatgcct
     8161 tattagcttt agttgaaaaa tgggtagttc ccaaaggctt aaaagtatct ggataattag
     8221 gaggctaaga taatgaagaa aattaaatat atacttgtcg tgtttgtctt atcgcttacc
     8281 gtattatctg gatgtagttt gcccggacta ggtagtaaga gcacgaaaaa tgatgtcaaa
     8341 attacagcat tatcaacaag cgaatcgcaa attatttcac atatgttacg gttgttaata
     8401 gagcatgata cacacggtaa gataaagcca acattagtaa ataatttagg gtcaagtacg
     8461 attcaacata atgccttaat taatggggat gctaatatat caggtgttag atataatggc
     8521 acagatttaa cgggagcttt gaaggaagca ccaattaaaa atcctaagaa agcaatgata
     8581 gcaacacaac aaggatttaa aaagaaattt gatcaaacgt tttttgattc gtatggtttt
     8641 gcgaatacgt atgcattcat ggtaacgaag gaaaccgcta aaaaatatca tttagagaca
     8701 gtttcagatt tagcaaagca tagtaaagat ttacgtttag gtatggatag ttcatggatg
     8761 aatcgtaaag gcgatggcta tgaaggattt aaaaaagagt atggttttga ctttggtaca
     8821 gtgagaccaa tgcaaatagg tctagtctac gacgcattaa actcagagaa gttagacgtt
     8881 gcattaggtt attctacaga tggtcgaatt gcggcgtatg atttgaaagt acttaaagat
     8941 gataaacaat ttttcccacc ttatgctgcg agtgctgttg caacaaatga attattacgg
     9001 caacacccag aacttaaaac gacgattaat aagttgacag gaaagatttc gacttcagag
     9061 atgcaacgct tgaattatga agcggatggt aaaggtaaag aacctgctgt cgtcgcagaa
     9121 gaatttttga aaaaacacca ctattttgat aaacagaaag gtggtcataa gtaatggaag
     9181 gtaatttatt acagcaatta ttcaattatt atgttacgaa ctttggttat ctatgggatt
     9241 tatttttcaa acacttatta atgtctgtct atggtgtgct gtttgcagct ttaattggta
     9301 ttccattggg aatcttgctt gcaagataca caaaactttc tggatttgta attacaattg
     9361 caaatataat tcaaacagtt ccagtcattg caatgttagc tattttaatg ttagtcatgg
     9421 gcttaggttc agaaacagta gttttaacag tgtttttata tgcgttactt ccaattataa
     9481 aaaacactta tactggtata gctagtgttg atgcgaatat taaggatgct ggcaaaggta
     9541 tgggaatgac acgcaatcaa gtgctacgaa tgattgaatt accgttatct gtttcggtta
     9601 ttatcggtgg cattcgtatt gccttggttg ttgcgatagg tgttgttgcc gttggatcat
     9661 ttataggagc acctacgctt ggtgacattg tgattcgtgg tacaaatgcg acggatggca
     9721 caacgtttat tttagcaggt gcgattccga ttgctatcat tgcaatcgtc attgatgtac
     9781 tattaagatt tttagaaaaa cgattagacc caacaacacg acatcgtaaa aatcaatcta
     9841 atcatcggcc gcaaagtatt aatatgtaat agtagaagat gtttataatt tagcgatttc
     9901 gtttcatgat ttataaaaaa tgaggctact caaggagctc aaataatctt tgagtagcct
     9961 ttttataggt tgtgtttgta tgcgtttaca ctaaaatagc aattattatc atgaaagttt
    10021 ttggataaaa agcgttaatt attgtaaaaa tactaaaaaa tgagatgttt tatttataat
    10081 tttctgcaaa tttatgatat tgtttcttaa tatatcatat taaaaatttg tttttcttaa
    10141 acataggagg cttatctaat tcatggacac atcaaaacaa tttagaggtg acaaccgatt
    10201 gcttttgggt atcgttttag gggttattac cttttggcta ttcgcgcagt cacttgttaa
    10261 tcttgttgtc ccattacaat caacatatag tagtgacgtt ggaacgataa atatcgctgt
    10321 tagcttatct gccttatttg ctggtttgtt tatcgtaggt gctggtgatg ttgctgataa
    10381 atttggtcgc gtcaaaatta cttatgtagg attgatatta aatgttgtag gttcattact
    10441 catcatcatt acacctttgc cagcattttt aattataggt agaataattc aaggtttgtc
    10501 tgcagcatgt attatgccat caacacttgc tattattaac gaatattata ttggtacaag
    10561 aagacaacgt gccttaagct attggtctat tggttcttgg ggtggtagtg gtatttgtac
    10621 gttgtttggt ggcttaatgg ctacatatat aggttggcgt tcaatatttg ttgtttcaat
    10681 tctattaaca ttattagcaa tgtacttaat caaacatgca cctgagacta aagcagaacc
    10741 aatcaaaggt atgaaagcag aagctaaaaa gtttgacgtt attggtttag tcattttagt
    10801 agtgacgatg ttaagtttaa atgtaatcat cacacagacg tctcattttg gtttagtttc
    10861 accgttaatt ctaggtttaa ttgttgtgtt tatctgttca ttagttggtt ttgtatatta
    10921 cgaaaataaa ataaagcatc cacttgttga tttttcaatt tttaaaaata gaggatacag
    10981 tggtgcaact atttcaaact tcttattaaa tggtgtagca ggtggtgcac ttatcgttat
    11041 taacacgtat tatcaacaac aattaggatt taattcttcg caaacgggtt atatttcatt
    11101 aacgtattta ataacagtgt tgtcaatgat tcgtgtaggt gaaaagattt tatctcaaca
    11161 tggtccgaag cgcccactat tactaggaag tggctttaca gtgattgggt taatcttatt
    11221 gtcgttaaca tttttaccag aagtgtggta tatcatatct agtatagttg gatatttatt
    11281 gtttggtact ggtttaggat tatatgctac accatcaact gatacagcag ttgctagtgc
    11341 gccagatgat aagtcgggtg ttgcttcagg tgtgtataaa atggcgtcat cattaggaaa
    11401 tgcatttgga gtagcagtat ctggtacggt ttatactgtg ttagcagcta atttaaattt
    11461 gaacttaggt ggtttcacag gtatgatgtt taatgccttg ctagcaattg ttgcattttt
    11521 agtcatttta ctattagttc ctaaaaatca aacgaatttg taaaactgaa atgaaagcaa
    11581 gttattatgt agggatttta aaggaaattt tgtgaaagta agtttatcat acacacttaa
    11641 tgttgcgtat tgacgtttaa tgttaggtgt gttcttttat agacgataaa agctgtgtgc
    11701 atattaagcg aatgattttc aaattgacgc taatatgcga aagtagtatt tttaaaatga
    11761 acaacaacga tgaagagggg tttataggat gaaaattgca attgctggat cgggtgcatt
    11821 aggtagtggc tttggtgcca aactatttca agcaggatat gatgtcacac ttattgacgg
    11881 atatacatct catgttgaag cggttaagca acatggatta aatataacga ttaatggaga
    11941 ggcattcgag ttaaacattc cgatgtatca ttttaatgat caaccggacg aaagcattta
    12001 cgatgttgtc tttctatttc caaagtctat gcaattaaaa gaagtgatgg aagatatgaa
    12061 gccacatatt gataatgaaa cgatcgtcgt atgtacgatg aatggtctga agcatgaaga
    12121 agtcattgcg cagtatgttg ctcaatcaca aattgtcaga ggtgttacga cttggacggc
    12181 aggtcttgaa agccctggac acagtcattt acttggtagt ggaccagttg aaataggtga
    12241 actagtggat gaaggtaaag aaaatgttat aaaagttgct gatttactta acgaagcgga
    12301 attgaatggt gtcattagta aagatttata ccaatcgatt tggaaaaaga tttgtgttaa
    12361 tggtacggca aatgcattaa gcacagtgtt ggagtgtaat atggcatcgc tgaatgaaag
    12421 tagttatgcg aagtgtttga tttataaatt aacgcaagaa atagtgcatg tagcgacgat
    12481 tgataatgtt catttaaatg ttgatgaagt atttgaatat ttagttgatt taaatgaaaa
    12541 agttggtgcg cattatccat ccatgtatca agatttaatt gttaataata gaaaaactga
    12601 aattgattat attaatggcg cagttgcaac attaggtaaa caacgtcata ttgaagcgcc
    12661 agtcaatcgc tttattactg atttaattca tactaaagaa agtcagcgac acgcacagga
    12721 ttaattggtg ttttaggtat gattacaagg aaatgacaat cacgtgatat tacggtcatt
    12781 attaagattg aaatgtaata aataaagaac agcagtaagg tactttcaaa ttgaaatgat
    12841 cttggtgctg tttttcttga ttgatcttcg tcataattca gatttgtcat aggtctacga
    12901 catactatta gtatttacta gacagttttt acgacgacac tttgaaaaat tttgaggcaa
    12961 atcatttgga agtctcacgt gaattttgta aactcatcaa gcaagtaatt atattaaaaa
    13021 gacaaataga gaaaaggtgt ttataatgag taaaattttt gtaactggtg caacgggcct
    13081 tattggcatt aaattagttc aaagactaaa agaagagggg catgaggttg ctggttttac
    13141 tacatctgag aatggtcaac aaaagctagc tgctgttaat gtaaaagcat atattggtga
    13201 tatattaaaa gctgatacta ttgatcaagc gttagcagat tttaaaccag aaatcattat
    13261 caatcaaatt acggatttaa aaaatgttga tatggcagca aatacgaaag tacgtattga
    13321 aggttctaaa aacctaattg atgcggcgaa aaagcatgac gttaagaaag taattgccca
    13381 aagtattgcc tttatgtatg aacctggcga aggattagca aatgaggaaa cttcacttga
    13441 ttttaactca actggcgata gaaaagtaac ggttgatggt gtggttggtt tagaagaaga
    13501 aacggctcgt atggatgaat acgttgtttt acgttttggc tggttatatg gcccaggtac
    13561 ttggtacgga aaagatggca tgatttataa tcaatttatg gatggtcaag tgacactttc
    13621 agatggcgta acatcatttg tgcatcttga tgatgcagtt gaaacatcta ttcaagctat
    13681 tcattttgaa aatggtatct ataatgtagc agatgatgca cctgttaaag gttctgaatt
    13741 tgcagaatgg tataaagaac aacttggtgt tgaaccaaat attgatattc aacctgcgca
    13801 accatttgaa cgtggcgtaa gcaatgagaa gtttaaagcg caaggtggta ctctgattta
    13861 tcaaacttgg aaagatggca tgaatccaat taaataataa tttatccgtt taatatacaa
    13921 agaataaaga cttggtcgaa tcgtggatga tatattatca aacgcacggc tcgaacaagt
    13981 cttttttatt atgtcttcgt tatctttgta tgaaggaata acagaattac aattaatgta
    14041 ctgaataatg caattaatgt tgtgattagt gctaatttaa tttctattgg tagccaagtc
    14101 agtacaaaag accaattatt gctaccgaga atgagatatg gtaatgcata taatatgagc
    14161 gctaaagcga tacatataca taatgataac caactcaata cagcaatccg ttttgatcta
    14221 cgcaaaagaa tttgaccatg gcgcatttgc caagcacgat aagctgagaa tataaatgct
    14281 aataaaataa gtgttgtcat caaaacggta acaatattaa attgatcttt atattgattg
    14341 agcatagacg caaccgtcga atatcgcttg tgatttacaa tttgtgtatt aagatgctca
    14401 actaatttgg gtacatattc cgaatttaga tttgcaagta caacaattcc ataattttgt
    14461 tttggattta gtaaaataaa tgatgaaaag ttatctagcg ttcctgaatg aaacactaaa
    14521 tgttcatcat tattggtaaa ccagccggaa gcatatgcat tggcattagg ttcaccaatt
    14581 gttgaagata aatttttatg tgattgttga actaatgatt tgtatttatc aggtggatta
    14641 agttggaatt ttatccaatg ttccaaatct tcagttgatg tcatcatata tgctgatggt
    14701 gtatcccaaa ggttaaattc aggtttagag acgacaggtg tcgaaccttg taattcatag
    14761 ccaatagcat catgttttga tttgtaattg gtttgtttga atgatgtatg tgtcatatgc
    14821 aaaggcttga gccatgaatt tgtaatatat tttgtatagg attgcttcgt aacgttttgg
    14881 ataattaaac ctaataaatc atagttcata tttgagtatt caaattcttc tccgggctta
    14941 tgatgtaatt catcacccat aattgcacgg gttacatcat ttaaacgatt atttttgctt
    15001 gtcacagaat cttcgcttgt aatatcacta ggtataccac ttgtttgagc caaaagttgc
    15061 ttaatcgtaa tagtttcatt ttgaccatta tagttcattt taaaatgagg cacatgtttg
    15121 gatacggcat catttaagtt taatcgacct tcttgagcta attttaaaat tgcaagacct
    15181 gtgaaagctt tcgtattaga agcaatttca tactttgttg tgggagaagc tttgactttt
    15241 ttatcaacat cttgataacc ataaccttta tttaaaaaaa ctttgccatt ttttactatt
    15301 aaaattgatg ctccaggaat gtgtcccttt tgtaaatcat gctcgataat tgtatctatt
    15361 tgttgttgcg aatcattggt taaccgtgtc ttcgtattgc tatttaatgt tatatatata
    15421 gcaattgaaa tggcgactaa aatgataata gaaatggata gaaaatacag ttttttagta
    15481 gtcataaacg ttccttttta tatgttaaat ttacttaagt gcctaatgag atttatttta
    15541 ttataccagt tctattgaat aaattaatta aagaggtata tttaccatta tttttgacac
    15601 cttatatgtt aataggtgta taattacata aaaaatatta attaactctc tatacttttt
    15661 ggaaagatag gcgtatagtg atatccatca aaaactataa aaaggaatag gagattatgt
    15721 tcaatcaatt taaaagactt attatagggc aacctaaaaa aaacagagaa ctaaaagacg
    15781 aaaagatatc gaagtttaaa gggttagcga ttctttcgtc ggatgcatta tcttcagtgg
    15841 cttacggtcc cgaacaaata ctgattacac tatcagtagt gggtgcagtt gcaacttggt
    15901 atactttacc gattgcaggt gctgttctga tcttattagc tgctttaatt atgtcttata
    15961 ggcaaattat ttatgcatat cctaaaggtg gcggcgcgta tatggtgtcc aagaccaatt
    16021 taggagaaaa atggggattg cttgcaggag gctcattatt agtcgattac atactgactg
    16081 tcgctgttag tatatcatct ggtgctgatg catttgttgc tgcattccca agtttatatg
    16141 ggcataaagt actgattgca tgtttacttg tactttttat tttaatatta aatttacgtg
    16201 gtttaactga atctgccacc gtattatcct atccagtata tcttttcatt atagggttag
    16261 tgatattaat atttataggt actttccgtg tggcgacagg agatattcaa ccacatatgc
    16321 atgcatcagt aggaactgcg gttcctggag taacattatt cttgctatta aaagcatttt
    16381 catcaggggc ttcatcgtta acgggtgttg aagctatttc aaatgcggta accaatttta
    16441 gagagccaag tgctaaaaat gctgtgaaaa cgttaattgc tatgggttca attttagcgt
    16501 ttttattagt tggtatcgtt ggtttagcat atgtttatgg aattttgcca caaacggaaa
    16561 cgacagtttt atcacaatta gctatgcaaa tatttggtga taatgctgcc ttctattttg
    16621 tacaggcaac gaccgtgatg attttggtat tagcagccaa cactggattt acagcttttc
    16681 cgatgttagc ggcttcaatg tctaaagata aatatatgcc tagaatgttt actgttagag
    16741 gtgatcgctt aggctactct aactcgatta ttattttagg tgtattagcc attattttaa
    16801 ttattgtatt tgatggtatg actgaagatt taattccatt gtatgcggtt ggtgtattta
    16861 ttccatttac actagcacaa ttcggtatgg ttattaaatg gattcatgaa cgtcctaaga
    16921 attggttaag taagttgtct gtgaacttac ttggtggtat cgtgacattt attgttttta
    16981 tgattttact cataactaaa tttagccaag tatggccgat acttattttc ttgccgttcg
    17041 tggtgatttt cttcttgaaa attaacaaac attatcgaga tatcgcagaa caattacgtt
    17101 ctgacattga tgttcttaat gtggacgtgg tagatcgtaa tttagcaatt gtgccgataa
    17161 caagtattac aacagcagtt gataagtcta tttattacgc acaaatgctt gcgaataatg
    17221 atgtcatagc agtacatgta tcatttggag atgaagatga aaaagcattc caagagaaat
    17281 ggaaacgtca tttcccagat gtaagattag ttattttaca ttcggaatat cgcagtatta
    17341 tacgaccaat ttcacgtttt atcgataaga ttaatcgtaa agccaacgat caaaactata
    17401 tgattacagt agtgatacca gaatttatta ctaagaaacg ttggcataat ttattacaca
    17461 atcaaactag tttgcgtatg aaattgtatt taatttatca aaagaatgtt aacgtatgta
    17521 caattccatt taaacttaaa aaatagattc tataatcaaa tcggattgat gaaaggttat
    17581 ttacttttca tcaatctgat tttttgatgt tgaatataaa aaccccgtac atatgagatg
    17641 ataatgactt tgtctcatat gtacgggggt attgttatgt cttgcttaat gtttggactg
    17701 taaagacaag acaatttcgt tgtaattgat attttctcga atttgagctg caacgatatt
    17761 gttgatttta tttttgcgaa ttaattcatc taaaagatga cgttgtaagt acaatgcttc
    17821 caatttgtgg ttatggaaca tagcttgcgg tatgatttga ttgctgtttt cttgacgttc
    17881 ttttcgacgt tgtgcacgcc actttaatga gcgactcata tcatagtaat gattaatgac
    17941 taagctaacc tcaagtacat ttgtactatt ttgttcttct tttaagcgta aaataatatt
    18001 gtgattcaca atacgcataa ttttttgaac atctttgaat gaattttcaa attcttgctt
    18061 cttagattct ttatttaagg ctttgtagtg cttcatcgct ttaagtctaa gccataacat
    18121 cttgaagaag tttgcaaatt tttcaacaaa tgatgcagta cggtgtgtct ctgttaattc
    18181 gacaatattg cggtaattat taatatcctg atatgttgcc ttacctttat caattaaacg
    18241 ctcaagtgta gatgtttcga ttacttttgc aatatcttct aaacgtttga gttcttttgt
    18301 attttgatta tcaggttctg aatttaataa aaataacaat tctccatagt attggtttaa
    18361 tactgggcga taatttgtat cgtttttgtc ttttttactt tcgtttttaa aatgctggat
    18421 cactttttga acaatgaaaa ttttggcaga ttgataagtc atacctttaa aagtagtatc
    18481 ttcggcagat ggtgtaatta aaggtaaaac aatttgcgct aagattaaac taattaatac
    18541 catgaaagat gcaataaaca ataaatcatt acggtattcg aatgcttgtc cttttgtaat
    18601 gataaatggt aatgtaagtg ccattgaaag tgaaattgta ccgtgaatac cacacatggt
    18661 cataataaat gcgtaacgca ctcgagaagg tggtgtttca tgtgaatcat gttcctcgtc
    18721 tagataagat tgtatatttt tcgggaaata aaaatctttg taccagaaat aaacccaaac
    18781 aaatcgacat gcataaattg caatagcgat taatatagtg atcactatta aaaatgaaaa
    18841 gttgtcaggc tctgtttgga aaatatctat gactacagta ggaatcataa aacctaatac
    18901 aacaaataca aaaccattta aggcataact aaatgtgttc caaatttgat ggtaattcat
    18961 ttgtagttcc gtttgtgctc taattaaacg gtcgcgttct aaaccatgga ttagacctgc
    19021 gattacaact gcaatgatac ctgaagcatg aacttcttct gctaaaaagt atacgacaaa
    19081 aggagttaat aattgaataa aagttaaggt attgttatct tttaaacctt tattagcggt
    19141 taagtctata cgtattctaa cgacaacgaa tccaataatt gcaccaataa gtacacctag
    19201 tattgttgaa atgataaatt gttcaacagc ttggaataat gaaaaggtac cagttactaa
    19261 tgcagtaaca gcaattttaa atgaaatgat acctgctgca tcattgagta aagattcacc
    19321 ttctaaaatc gtcatagaac ctttaggtaa taattttccg cgtgtaatag cagatactgc
    19381 tactgcatca gtaggacata aaattgctgc tattgcaaaa gcggctggca ttggtaaggc
    19441 aggccaaatc caatgtataa aatagccaac accgactaca gttgcaaaca ctagtgccat
    19501 tgacattaat agtataggtt tacgatattc taataatttt gttcgagaga cgtgggtacc
    19561 ttccacaaaa agtagtggcg cgataacggc aaacataaat acttcagaat tgaattggaa
    19621 atcaacttgt attggaataa tgaaaataac gacacctaat gcaatttgaa taaaggcagt
    19681 aggaatttgt gggaatcgat tattgataac cgaactaata atcacagcaa aaataaaaat
    19741 taaaaatgct tctaatagtg ccatacaata ctcctcaaaa ttttaatagt taatatttta
    19801 tcacttttaa ggcataatga catagatata ttgataaaat gaagttattt tcaaaaaaac
    19861 tctagtatcg gttgaactga tactagagcg agatgtttaa attattgatt gtcatatctg
    19921 aaatgaccgc tgtcattttg tcgttgttca tacgcgagct tttcagcatt cgttttgtat
    19981 tttttataaa agaaaaataa aaatataaac cagaatggcg aaatataaat agctgctctt
    20041 gtttcgtcac taaagaataa taaaatgaat acaaagaaga agaacgctag aataatgtaa
    20101 gcaataggct taccaccaat caacttaaat ttactgtttt tatgtgcctc aggatgcttt
    20161 ttcaaataca ttagataagc gacaataatc attgcccaaa caactaaaaa caacacagtt
    20221 gataacgttg taacgtatat gaatagttga attgcattag ggaaaatgta gtttaacaag
    20281 gctgctataa gtaatgcaat tgatgaaact aacattgata aataaggcac gccatgacta
    20341 ttcgttttat ttaaaacttt aggacctaac ccttgttgtg acagtccgaa taagatacga
    20401 ctattcgaat agataccact atttgtagca gaggccgcgg cagttagcac gacaaagtta
    20461 acgacacctg ctgcaaatgg tacgccgatt aatgtaaaga gtttaacgaa agggctacta
    20521 tttggatcga tatcattcca aggtatgact gacataatta ctaatagacc accgatatag
    20581 aataataaaa tacggatagg tacattatta attgctttcg gtaaggtttt ttcaggatct
    20641 ttcgtttcac cagcagttac acctataagt tcaataccaa tgaatgaata tacagcaatt
    20701 tggaatgaca ttaagaaacc aaatgttcca ccagggaaca tgccaccgtg actgattaag
    20761 tttgtgaatg atgcatgtcc ataatgtgtt ttaaatgaga aaaagattaa tacaagacca
    20821 acgataacca tcgcaataat tgtgacaact ttaataatcg agaaccaaaa ctccagttca
    20881 ccaaataatc tggcacctaa taagttgaag ctaatcaaga ttaaaacaat aaatagcacg
    20941 gtaatccaat ttgggacttg tggataccaa aatgcaaagt attgtcccat cgcagttagg
    21001 tctgacatac ttgatacaat ccaacataac cagtaagtcc agccaatgac aaagccacca
    21061 aaagggccta aatattcatt tgcaatatca acaaatgaat taaatcttgt attgctcaac
    21121 aacaattcgc ctaatgcgcg cataaaagcg aatagtacaa ccccaataat catgtatgtg
    21181 aataacagtg atggaccagt taaagatatt gtttgacctg atcctaggaa taacccagtt
    21241 ccaattgcgc ccccaattgc tattaattgg atgtgtctgt tattcaactc tctatgcaat
    21301 tttcttgcca taattttcct cctcaggata aagcaaataa aaaagttgtg tgtaagcgtt
    21361 ttcttaatta taaatactaa agaaatccat ttaataaagc aattattttt ttaaatataa
    21421 gaaaaaacat ttgataggta agggtatgat aactaaaact tatcgatttt ttgaaaagat
    21481 ataagttttt atgcaaaaat ataaaataat catctaaatg aagcagttaa ctatatatat
    21541 tagataagct atggcataat aaataacatt ttaatttgag taaagaaggt aagggtatga
    21601 agatagggac aatcgccgat ttacatattg atcgtcataa taaaaaaaca tccgaagatt
    21661 acttagaggc attggttgaa atagttaagt ataagaaatt ggatatattg ttgattgcgg
    21721 gggatatctc aaatcattat caattgacgc accaatttat aacgcaattg acaaaacaat
    21781 tagatatacc tgtgaaattt gtacctggaa accatgattt atgggaagtt gaaagtatga
    21841 ctacgcaaga catttggaat aattataaga gtatgtcaca gtgcttggta ggaaaaccat
    21901 ttatagtaaa tgaagaatgg gcaatcatag gacatactgg ctggtatgat tatagctttg
    21961 cagcacaacg attttcatta gatgagttac aaaaaggaaa acattatggt gcgacttggc
    22021 aagataaaga acgaatatct tggggcatat cagatcaaaa tttatctaaa atagcggctg
    22081 aacaagtgaa gaaagatata ttagaagtag gaaatagacg agtgatttta gtcacacatg
    22141 ttgtgacgca ccctgatttc attgttccta tgccgcatcg tatattcgat ttttataatg
    22201 catttattgg gacaagtgat ttcaatcctt tgtatgcgat gttcgatata ccatatagta
    22261 ttatgggcca tgttcatttt cgtaaaagtg tgatagatga tggcagatgt tatctctgtc
    22321 cgtgtctagg ctatccaaga caatggcgtt cagaagatat ttaccaggaa ataaatgaga
    22381 cgatacaaat aatagaaatt taaaatgcgc aaacctgacc cagtttgcgc attttatgtt
    22441 ttacacacgc gagtaatgtg tttacttacg tgtgtttatt ttgttgctga ttttcaattg
    22501 tatatgaatg tggttgcaca taaatgcact ttcttcctgg tgaattaaag ctgtattcca
    22561 ttttctcttt acgaatttta ataatttgtt tgcgatttgg aatgatggca ggtaaaacta
    22621 ggccacgacg aatatgactc caaagtggat cgatataata gtaatagtaa tcatcgtacc
    22681 caatgagtaa cgttacgtga atatttgaaa cttgtttcgc tggcttgtta tcaaagcgga
    22741 aaacacgtag taatggttta gaaccaagat tagtatggta tattaacaca ggttgacctt
    22801 gatcgataat acctttaaga tcttctaacg atttaccagt gccgtctacg atattaggat
    22861 tgtatttttg taaaaatggt acatatgctt ctggaaatat cgtttgatga taattgccaa
    22921 gcttaatgaa taagtgatgt ccaacataac ctttatgtgg attgttcgga tgtgtcggcc
    22981 aatgtctcat aatttctgta gcagggatat gttggttgtt gtattgcaac atcatggctg
    23041 cggaaacacc ttcacacccc atgaccatag ggataggaaa tagctgactg ataggtttaa
    23101 ctggtaatat ttttcggttc ataatatagt cctcgcattg attcaataaa tatttaatat
    23161 aattatatag cgtcaatgca aaatgtccta aacatatgtt ttacatgagt gaataaaatt
    23221 aatggagtga taaaatggaa tatcaattac aacaacttgc gtcgttaacg ttagtaggta
    23281 ttaaagaaac gtatgaaaat ggacgacagg ctcagcaaca tatagcaggg ttttggcaaa
    23341 gatgttatca agagggagta attgcggatt tacagttaaa aaataatggt gatttagccg
    23401 ggatacttgg cttatgtata cctgaattag acggtaagat gtcatatatg attgcagtta
    23461 ccggagataa tagtgctgat attgaaaaat atgatgtcat aacattagca agttcaaagt
    23521 atatggtatt tgaagcacag ggcgcagtac ctaaagcagt tcaacaaaaa atggaagagg
    23581 ttcatcacta catacatcaa tatcaagcag atacggtaaa atcagcacca ttttttgagt
    23641 tgtatcagga tggtgatact acaagtgaaa aatatattac agaaatttgg atgcctgtta
    23701 aagggtgatt gaatagaaat gtccttgcta tgaaggcgta attttagttg aagattcgat
    23761 ctcataattc ataaagaaga accctgacaa agatagatat ctttgctagg gttctaatta
    23821 tgttgaagtg ttatgcgaca tgttgctttt taatcatttt aaagtaaatg atttgtagac
    23881 tgactaatag aatggctgta atgaagataa taatcatata tggtgatgta ttaaattcgc
    23941 cttttaagcc aactaatggt gcaacagcgc cacctaagat aaattggaat aagccaagta
    24001 aacttgatgc gttaccactg ccacctgttc gttcttccat agccattgtg aaaccaagcg
    24061 gtccaattga cgtcacagga cacacattta agaagaatgc gatgagtaag acccaaagtg
    24121 gtaaatggaa tgtaagtgtc aggataatta aagcaacacc taccacttgt ataatagtta
    24181 aaatgattaa taatatgtgg cgatgtaatt tttctactaa taaagcaacg acttgactga
    24241 caatgattaa acctacaccg ttaacagcaa acatgatact aaattgttgg ggtgtcatat
    24301 tatacaattt ttgagtaata aatggcgatg cagatgaata actaaatagc attacataag
    24361 ttaaaccttg taatagcatt ggaataataa atgctggttt tttcaaaaga cttccaaaat
    24421 ctttaatgac gctactaaaa ttcacctgct ttaattcatc tttagatgtt ttaggtaatt
    24481 gagaagcgac gccaattaaa atgatgagtg ccacaatagt taaaattgtg aaaatagaac
    24541 gccatgttgc tacggataaa gctaatccac cggctaatgg tgcaagaata gtgatgatgc
    24601 cattaactac cattaaagat gctaaaaatt tagcgagtgc gttgccacta aatttatcac
    24661 cagcagaggc ttttgcaatc acgatgacgc caccaccagt taaaccttga ataaatcgta
    24721 aagttaagaa taatggcaat tgatcaacaa acatagacaa acctgatacc aaaatgaaaa
    24781 tgatcaaaat ggatacagca atccgtttgc gaccaaaagc atcggataaa ggtccaaaga
    24841 taaattggcc tagtgcaaga ccaatcattg tgaatgataa tgttaattga atttctgatg
    24901 tagtagaacc aaaatcacct tgcactttag gtaatgatgg tacgtacata tctatagtta
    24961 gtgggccaaa agcggtcatg acgcctaacg taattagcaa taaaaatgaa aaatgcttcg
    25021 ttttggtttt cgttgattgc atgatcagac tcctttaaat gatataatta tataaattat
    25081 atacgttttg tgtgtatttg tatgtactta gaatacaagt ttatataaaa aatccctata
    25141 ctcttaatgc atcatcacga ataacgtagt gatacagata aagtataggg aattaatgtt
    25201 tatcatcaaa gcaggtgtaa taattaatta gcgccaccat tgtcatcttt aaataagctt
    25261 tctaatttag atttaatact gtcgaatttt gtattaatat catttaacat gctttcaatt
    25321 ttaccttggc ttgcattgtt tttaagtgca ttatttgcct ctgtcaattt gttgatttgg
    25381 tcttgataaa attgagttag cttagaatca gctttgtttt gttcttgctg cttcaagttg
    25441 tcgatttgat tttgtaaatt tttaataatg tcatcagttt tttggttgtt tttaatattt
    25501 tctttagcat tatctacttg ctggttaatt tggccgtctt gattttcaac ttgtttttta
    25561 taattttgag agactttagg gtcattacta actttatcgc tatcattgtt aagtaaggcg
    25621 cgtgtgacaa aaatagcgac aataattaag agaatggcaa taatgatata taaccatttt
    25681 tttgaacggc gggatttctc gttttcttct tcaagaattt gttctcttcg ataatctcta
    25741 ccattatagt atcgttccgg gtgttcttca ggatcgcctt tagcatattg ttgtctatac
    25801 gatgcgtctt cagattgacg acgatgattt tggttttgat tgtcgtattg atatgaatca
    25861 cggtatttat cagttctttt catgggtttc acctcattca agttttaact gcaaataata
    25921 aagctgatga tttactttga cattattgta atttcagaat acgagcaatg tcagttgcag
    25981 tgtttaataa attttgttcg ctattttgta ggacatcttc taaagtgcta ggtgaagaga
    26041 ttatagaata ggcactatca ataccgaaat cgtaaacatg ttgataattt tcgcctagac
    26101 tgccacaaat cgcgatgaca ggaatatgat attgttttgc agctaacgca acgcctacgg
    26161 gtgttttacc aaagatggtc tgataatcca tgcgtccttc tccagtaata acgaggtctg
    26221 catctttaat tctttgatga aaatctgtaa tgtcaaagac gacatcaata ccttttgtta
    26281 aagttgtctc acaaaacgct aataatgctg cgcccatacc gccagctgca ccagaacctg
    26341 gtatttgatt aacggacttt cctgtgcaca tttttatctt atcatgataa tgcgacattg
    26401 cgaaatccaa ctttggtatc atctttgcat cagcgccttt ttgaggacca taaatatagg
    26461 tagcaccatt ttcacccaat aaaggatttg aaacatcaca ggccacttta aaggtcacct
    26521 cttttaatcg cgaatctaga ttggttatat cgatttgtgc aatgtgagca agattagcac
    26581 cattcatttg taataagtcc ccgtttacat cagtaaactt tacgcctagt gcacttagca
    26641 tacctgtacc accatcattt gttgcactgc caccaatccc taaaataatg gtcttagcac
    26701 catgatttaa tgcatcttta attagttcac cggtaccata tgatgatgtg tataaaggat
    26761 tacgttcctc tttttctaat aaatccaaac ctgacgctgc cgccatttca ataattgcaa
    26821 tttgttgttc gtctgcgcgt gcataacatg cttcaatagg tcgcattaaa gggtcattaa
    26881 cgatgactgt atacttagtg gcacctgttg catgcattaa agcatctgtg gtaccttcac
    26941 caccatcagc catcggaatg atatcataat gaagggtatt cccataaaca ttagtaaaag
    27001 cctgttttat aatattgcca acttgctgtg cggtcatact ttccttaaat gagtcaggag
    27061 cgatgacaat tttttgtaat tgcatagtag acatcctctc attactgttg tcgctcttat
    27121 tgtatataaa attactagtg aactaaagta atctctatag tgctaatgag tcacgcgata
    27181 aatcagttac attataatgg cgtataagga tgaggggaaa gagactaaat ttgctgtgaa
    27241 agggtataaa gattgaaata agcatatttg aagtgaagcg gattggctcg catattcgag
    27301 tatgttcgag aacgtagtta tgcatatatt ttgatgttga ggagttacac atatgaaact
    27361 aacacaaacg catgctgaaa ttttaaaatt tatcattgtt ggcggcatta atacgttaaa
    27421 ttattatgtt gtctatttat tgctgttaaa attattacac attgaatata tgattagtca
    27481 tattaccgga tttctagtcg cttttgtgat ttcatattat ttgaattgtt attttgttta
    27541 cagggtaaaa cctacttgga gaaaattcat tagttttcca attacgcaga ttgtcaacgt
    27601 aagcttacaa acagttttat tatatgtatt tgtatcctgg ctaaatttgc cagcagaaat
    27661 tgcaccattt gctggtttaa ttattacgat acccatcaca tttatattat ctaaatggat
    27721 tttaaaagat agcaattaaa gtagcgtaaa ccactaaaaa aaactttact taagccttaa
    27781 tattgcgtga aatataataa ataaatgata taatatgatg gtcgcctaac atctcgggcg
    27841 ttactttaac gcagagagga ggtgtatgac ggatgttcaa tttattaatt aacatcatga
    27901 cttcagctat aagcggctgt cttgttgcgt tttttgcaca ttggttacga acgcgcaaca
    27961 ataaaaaagg tgacaaataa ccaacaccta aataaatccc ctcactatgg cagtagtgag
    28021 gggatttggt gtatttagat gttcaattta ttatgtaatt aattatagca ttgatgaaca
    28081 aggtgtgcaa tgtatttttg caatattaca ataaatgaat ttaattatat tagaattaag
    28141 tatttcgaaa aatgatttaa tagttgagtc ataggatcat tagataaagc gaataatcaa
    28201 ttatagggac attgggatac aaatcaatgt actagactct acaaggctat attcagggac
    28261 ccaacaaaga gaaattggat tcccaatttc tagagacaat gcaagttggg gtgggacgac
    28321 gaaataaatt ttgtgaaaat atcatttctg tcccactccc agaaccacta cataataaat
    28381 cattagtggc tctttatcat ttctgcccca taaccttgtg aatttttaaa agaaatgtgt
    28441 cacaaatcca cgcgacattg ataatcgtta tcaactaata tatgatgtac ttgtaataag
    28501 tattaatttt taacaaataa caaatttata ttatgtatat catccagtga aataaataat
    28561 ataagcggct taatttagat tattaattga aaggagttac atatacgatg aacaatcaga
    28621 caaattggat aaagatactc agcggatttg cttctgatag taaatggaaa attatgttat
    28681 caattttgtt gtctatcatc agtgtctttt ctggattagt tccttattgg gcagtattta
    28741 aaattatttt aatgatgatt aacaatacat atacgattaa ttcgattatg gtttatatct
    28801 ttattgcttt aatcgcttat atttcacaag tgtgttgttt tggagcgtca acgatgctat
    28861 cacatattac ggcatatgaa attttatctg aaattcgtaa aaaattagct caaaaattaa
    28921 tgcgtctccc tttaggcgta gtggaatcta agaaaatagg tgaattaaaa aatatatttg
    28981 tcgataaggt tgaaacaata gaattacctt tagcacatat gattcctgaa gttataggaa
    29041 acttactttt gtcagctgct atctttttat acataatgct cattgattgg cgtatggcta
    29101 gtgccttatt agtaacgata ccaatttcaa ttttcgcttt taaaaaagtt atgtctggat
    29161 ttaatgagac atatgctgaa caaatgaaat cgaataatta tatgaatagc gcgattgtag
    29221 agtttatcga aggcattgaa gtgattaaaa catttaatca atctcaaagt tcatataaaa
    29281 aatataaaga tgcagtagat aattataaga ttcacacttt gaattggttt aaaaatacat
    29341 gggggtatat gaatttagga gctagtgtat taccttcaac atttttaggg attttaccgg
    29401 tcggcatgta tttgatatct atcaaccaat taaactatgc ggaatttttc ctatgcatcg
    29461 tattatcttt aggtgtagta gcaccgatta agaattttac taattatgta aatcatttaa
    29521 agtctataca atacgcatta actgaagtga atcaaatatt aagtctagaa gagttagtat
    29581 tgtcaacaaa atttaagaag cctcaacatt atgaaattgc ttttaataat gttggatttt
    29641 catataacaa agataaggac gatctggtct ttaagcattt atcatttaca gtaccagaaa
    29701 ataatttcac agctatcgtc ggggcatctg gtagcggtaa gtcaaccatt gccaagctta
    29761 tatcacgata ctgggatgtg acttcaggtg aaattacgat tggcggtata aatataaaag
    29821 atattgaatc gaaacaactt aacgatttag ttggttttgt tggacaagat aactttttat
    29881 taaatcttac ttttaaagaa aatattaaac ttggcaatcc agaagctacg gatgaggcag
    29941 ttgaaaaagc tgccaagtta gcacaatgtc atgaatttat tgaaaagttg ccagatggat
    30001 atgatacgaa tgttggtaca gtgggagata aattgtctgg tggtgaaaaa caacgagtca
    30061 ctattgcaag aatgatatta aaagatgcgc ctatcattgt attagatgaa gcgactgttt
    30121 acgttgatcc agacaacgaa caaaaaattc aagaagcatt aaatgtgttg acgcaggata
    30181 aaacattgat tgttattgca catcggttat ctacgattca acatgcagat caaattattg
    30241 ttttaggtaa acaacaaatt ttagaaaaag ggtcacatca cttattgcta aaattaaacg
    30301 gtaattataa gaaaatgtgg gatacgcaca tgcatacaaa agattgggga atcaatactg
    30361 gacataatta aactaatgag aaaaggaggt caaatatgtt tcaaattaca tttaaaattt
    30421 taaactggat aagaccatat aaagcaagaa tgattttagg atttagcatg tcatttttaa
    30481 atgctatttt tattgcgtta cctatctttt tagctgcaaa aatatttaat aatgtgctat
    30541 ctcataaacc tatttatatg aaagatatat tgaatgttgt aattatcatg gttttattag
    30601 tgattggacg atttattaca gcatatttca aaagcaaaag ccatgagagc atcgcttatg
    30661 aaatgagtgc gaaagaacgt ttagatatag gggataaatt gaaaaatgta aggttaggtt
    30721 attttaattc gcatcattca aatgagttaa caacaatagt aacaacagat ttaacctttt
    30781 tagaaaactt tgctatgaaa atggtggacg ttgttgttaa tggatacata ttaattacag
    30841 tactcatatt gtctctactt gtagtttcgt ggcaagtatc attattagca tgcattggcg
    30901 tattactatc attttttgcg attcaattat tagaaagaaa gagtcgacaa aatgcgccag
    30961 cgtatcataa tgtacaaaac caattagtgg aaaaggtatt ggaggttatt cgtggtattc
    31021 aagtaataaa atcattcgcg aaagaaaata cgagtcttaa aagttttaac caagcagtca
    31081 atgaaagtaa acgtataaat acaaaaatag aaatgcaata tatcccattc aatttattgc
    31141 atttacttag tttaaaagtt gtttcaataa tgattgtatt agttgcatgc ttattatata
    31201 tgaatcatag tattgattta cctaccctta ttatgatttc aattttttca tttgtgatat
    31261 ttgatagtgt tgaaaatatt aatagtgctg cacacgtact tgaaatgata gatatgacga
    31321 tagatgatat tgaaaagata aaaaatgctc cagaactgga tgagaatgga aaaaatttga
    31381 cgattaaaaa tgaaaatatc gcttttcaaa acgtgaactt ttcatatgat gataaacaag
    31441 tgataaagaa tgtgaatttt gagataccta cacaaacatc aacagcaata attggacctt
    31501 caggaagtgg gaaatctaca ttatgtcact tactcttgcg cttttatgat atcgatgatg
    31561 gaaatattcg catcgatggt gttgatatta aagatatgac attaagtacg ttaatgtcga
    31621 aaattagtgc agtatttcaa aaggtgtatt tatttaatga tacgattgaa aataacatat
    31681 tgtttggcaa tccaggtgca acgaaagaag aaattattcg tgcagcgaag caagcatgtt
    31741 gccacgactt catcatgtca ttacctgagg gatatcaaac aatgctaaat gaaaaaggta
    31801 gtaatttatc tggcggagaa aagcaaagga tttctattgc tagggcgata ttaaaagatg
    31861 caccaataat tattttagat gaagcaactg caagtattga ccctgaaaat gaacagctga
    31921 ttcaaacggc aattaatgaa ttaagtaaag gcaaaacagt aattacaatt gcacataaac
    31981 ttgaaactat taaaaatgca gatcagatta tagtgctcaa tgaaggtgaa ataattcaaa
    32041 aaggtagtca tgatgaatta attcgaaaac caggaatgta tcaagacttt ataagaataa
    32101 aaagtaaatc agcaggctgg aaattataaa taatagttta atatggaatc agaatttgga
    32161 aataaaaagg gtgatagata atcaacagca aaataaatcc cctcactagg gcaatagtga
    32221 ggggatttgg tgtatttaga tgttcaattt attatgtaac taattatagc attgatgaac
    32281 aaggcgctca acgtaatatt acaattaatg gattgtttca caagatggta aagctaggat
    32341 gtctttttat taagaaataa tgcaattatt aattttaact gacatatttt atcgaatcgc
    32401 tgtttatatc tgcccgaatt ccttaagaag tcttagtcat ttcaatagca aggtcaaaat
    32461 tttgccaaaa tttatagtta tactgagaag tttaaattca tgttttcttg aaaaacatgc
    32521 gccttaaatg taaacttatt aattataaaa gtttacattt ggattgaggt ggttattttt
    32581 atgaggattt ttattacaag tacgaatact gatgtaggca aaacctatgt tacaaagcat
    32641 ttataccatg ctttgaaaac acgtggtcat cgagtttgta tttttaaacc atttcaaact
    32701 gaggaacgcc aagacgggac gtttccagat ttagaagtat ttaaaaatga atgtgattta
    32761 agctatgaca taacgtcact ttatactttt aagcaacctg tatcaccaca ccttgcattt
    32821 aaaatgacag atcaaatttt tctaaataag cagcgtgtat tagataaggt aaaagtttta
    32881 gataaggaat ttgattttat cttaattgag ggtgctgggg gaattgccgt accaatatat
    32941 gaaggtacag atgatttcta catgactaaa gatctaatca atgattgtgc agattgtgtc
    33001 atcagtgtgt tgccatcaaa attaggtgct attagcgatg ccattgttca ccaagattat
    33061 gttaatcaga atgtatcggc gagtaatttt ttaataatga atcgctatac agacagctat
    33121 attgaaaaag acaatcaaat gacgattgga aaattaacaa ataaaacagt ctatacattt
    33181 gaagaacatg ccacgtatga aaatttctca gaagcatttt taaaacaatt aataggagtt
    33241 aaaaatgaat tacacacaac aacttaaaca aaaagactca gaatatgttt ggcatccatt
    33301 tacacaaatg ggtgtatata gcaaagaaga agcaatcatc attgaaaaag gaaagggtag
    33361 ttacctttac gatacgaatg gcaataaata tttagatggt tatgcatcgt tgtgggtcaa
    33421 tgtgcatggt cataataaca aatacttaaa taaggtaatt aaaaagcaac tcaataaaat
    33481 tgcccattct acgctgctag gatcatcaaa tattccgtca atagaacttg cggaaaaatt
    33541 aatcgaaatc acgccaagta atctaagaaa agtattttat tctgatacag gcagtgcgtc
    33601 tgttgaaatc gcaataaaga tggcatatca gtattggaaa aatattgata gagaaaaata
    33661 tgccaagaaa aacaagttta taacgctaaa tcacggttat catggggata cgattggtgc
    33721 ggtaagtgtt ggtggtatca agacctttca taaaatattt aaagacttaa tatttgagaa
    33781 tattcaagta gaaagcccat ctttctatcg cagtaattac gatactgaaa atgaaatgat
    33841 gacagctatt ttaacgaata tagagcaaat tctaattgaa agaaatgatg aaatcgcagg
    33901 gtttatattg gaaccgttga ttcaaggtgc gacaggcttg tttgttcatc ctaaaggctt
    33961 tttgaaagaa gtcgagaaat tgtgcaaaaa atacgatgtc ttattaattt gtgatgaggt
    34021 agcagttggt tttgggagaa ctggaaagat gtttgcatgc aatcatgaag atgttcaacc
    34081 ggatattatg tgtttaggta aggcgattac tggtggctac ttaccacttg cagctacatt
    34141 gacatctaaa aaaatataca atgcattttt aagtgattcg catggtgtga ataccttttt
    34201 ccatggtcat acatacaccg gaaatcaaat cgtttgtacg gttgcattag aaaatataag
    34261 actttatgaa aaacgtaagt tattgtcaca tattgaaacg acatcatcaa cacttgagaa
    34321 acagttacat gcgctgaagc gtcatcgaaa tgttggtgat gtaagaggac gaggcttaat
    34381 gtttggagtt gaattagtta cagataaaga tagtaaaacg ccgttagaaa ttgaaaaagt
    34441 tgaacgtatt gtacgtaatt gtaaagaaaa cgggctaatg attagaaatt tagaaaatgt
    34501 cattacgttt gtgccagtgt taagtatgtc aaataaagaa gtgaaaacga tggtacgtat
    34561 ttttaaaaag gcagtacata acattttaga taggaagtgt taatatgaat ttggctaaac
    34621 gcatattaca aggggaacaa ttaacaaaag agactgtatt gaaaatttat gaggatacta
    34681 atattgatac cttagattta ttaaatgagg cgtacatttt aagaaaacat tattttggta
    34741 aaaaagtaaa attaaacatg attttaaatg ctaaaagtgg tatatgtcct gaaaattgtg
    34801 ggtactgtgg acaatcacga gatattaaac aaaaacagcg atatgcttta attccagagg
    34861 aacaaattat cgatggagca aaggtggcac atgataatca tattggaaca tattgtattg
    34921 ttatgagtgg tagaggaccg agcgataaag aagttgatca tattagtaat actgtaagaa
    34981 cgattaaatc tcaacacccg caactaaaaa tctgtgcatg tttaggatta acgaatgacg
    35041 aacaagctaa gaaacttaag tcagctggtg tagacagata taaccacaat attaatacaa
    35101 gtgaaaatta ccatgataac gtcgtgacaa cgcatagtta taaagataga acagatacga
    35161 tagaactaat gaaagcgaat aatatatcac catgttctgg cgtgatttgt ggtatgggag
    35221 aatctaatca agatattgtt gatatggcat ttgctttaaa agaaatggat gccgacagta
    35281 ttccgattaa ttttttgcat ccaatcaaag gcacaaagtt tggaagcatg gatgatttaa
    35341 caccaatgaa atgtttaaga atcgtagcat tattccgatt aatcaatcct acgaaagaaa
    35401 ttcgtattgc tggaggaaga gaggtcaact tacgttcgtt acagccatta gcattaaaag
    35461 cggcgaattc aatatttgtc ggtgattatc taattactgg tgggcaaccg aaccaattag
    35521 actacgatat gattaatgat ttaggctttg aaattgatta tgacacttgt gaaaataagg
    35581 aaaacaagaa tgaagtttca agagcaaatt gatttattac aacagaaagg gttatatcgg
    35641 tcgcttaaat cggtagggta tatagataga cagtatattg aagtagaaaa taagagatgt
    35701 acgaactata catctaatga ttatttagga ttaggtcaaa tagcgtttga taaggatgat
    35761 ttcgaaagat ttatgcggaa gtatagttat cacttatcaa gttcaagatt aattagtgga
    35821 agttcgacag cttatgaaga aattgaaaca atgttagcag gttggctcgg atatagtgca
    35881 tgtactatct taaatagtgg ttatgatgct aatttggcgt tatttaatat tttcaaaaat
    35941 acaaattgtg tcgtgttttc agatcaagaa aatcatgcga gtattattga cggtattaag
    36001 ttaagtggtt tagaaaaagt gatatataag catttagata ttgctgattt agaaaaaagg
    36061 ttagagaaat accctaatca aaatatacca aaaataatca tatctgatag tgtattttca
    36121 acgaatggcg acgttgtgga tattggtcaa ttagtctcat taaagcataa atataacgca
    36181 acactgatac tcgatgtttc acatagtttt ggaatagaga attactcgaa ttatcaaggt
    36241 gtagatatac tcacttctag tttatctaaa gcatgtggtg catacggggg tgtgatttta
    36301 agttcaaatg atgtgaagga tatgttaatt aatcacggta gaccactcat ctactcaagt
    36361 agtttgccaa tttataattt gtattttata aaaagaaaca ttgaaaagtt aataaatgct
    36421 gatgatagac gcactaaatt aaatagtttg agtaaatatt ttaaccaaaa gttaaaagca
    36481 ctcaatgtta attataatag ttcaaactcg ccgattaagt ttattgagtt tgatgacata
    36541 gaagcggctg agaacattca tcaaacatta ttaaagcatc atgtgtttac aagttattta
    36601 aggtatccaa ctgtgactaa gccaatgtta agaatatcat tgtcgtattt tcatactgaa
    36661 caagatatag ataggttgtt tgaaattttg catcaagaag attgaggtga tcgtcatgta
    36721 tagtataaaa atgcgttcta gcaatcaaga tgttcatatt agtggtgctg aaacgatttg
    36781 tgagtttgac aaaatagaac agacggtaca aaggttttat aataaaggtt tttttcatga
    36841 aaatgggcaa ccggattttc tcaatataaa aatacaaaaa atcatggaac cgattcaaca
    36901 aataaaagca ttacaaatta ttgaggatga taaagcaaat ctccaacatt taacacaaga
    36961 atgtggtgtc actgaacaag cgctaaatca agggatgaca tatattaaaa atgaaacggt
    37021 ttatacagga gctattattc tatctgctat atctggtaaa cgtttagatt catttggaca
    37081 aagggggatt agggcaacac atttttcgtt tgaagatata aataataaag gtgatcttaa
    37141 tgaaagagtg actgatgcct tagcaattgc tagttgtatc aatgcgcatc cgtatgtcaa
    37201 aggagaactt tgcgtgtccg atgacttaac gtatacgaca ggttattttg ccgctgctaa
    37261 aattggttac catcgattat ttgatattaa accagttaat acgagatatg gaggcagaat
    37321 aatatttgtg gacgattgta ttgatttaaa tcattacata tcatttttag aaagcacacc
    37381 gaagcaagtt gtttatgaaa cggtataggg gttttagtat gacatcaaaa gatattactc
    37441 aaattagtgt cattgctgcg attttaacca ttttggcagt tttgaaaata ccgtccatta
    37501 taccaggatt agattttcaa ttatctgcac cggcagcatt attgatatta gctttctttg
    37561 gaattaaaaa gtacttttta ggtggattat tatctagcct attattacta gtatttggcg
    37621 tatttaatcc aattaatgtg attatctcta ttatatttag agttatagct attgcagttg
    37681 tttatttatt gaaaataaat gtactatcat tagttttagc aagtgtatta ggcagtttgg
    37741 tatctaggct actattatct attattttaa atttacctgt gtgggtagtg ttgttaaacg
    37801 cgattccagg cgtaatattc actttaattg tagctattcc tttatatctc acattgagaa
    37861 aaagaatggc agtattacta agataataaa tcaaaacacg gtcgtcacaa ttactgttgg
    37921 cgaccgtgtt ttactagcta tttattgttt tcagtttctt ttgtatctaa caatttcact
    37981 ttgtgatttt cccaatcaat ttcatatgtt gatttaaatg ttctagtttt aaagttttta
    38041 taatttgcgc ctgcccagta gaagccattc caacgaattt ggtataaatc catttcacgt
    38101 tgataagtta ctgtaatttt agatttttta gcgccatctt gtctgtgtga tagtacgctt
    38161 aaaaattctg gattgaagtt acttctagat aataatggca tttggtgttg cgctatgaag
    38221 ttttggccag cgtatgcact gctttgtctg ccagctaaga agagttcatt accatatgtt
    38281 gggtggaagc tatctcttcc ataaggtccc caaccattat tcataatttt atgtgcttca
    38341 actccccagc caacattttt ataatttgtg ttgcgactta atgttgttct gtaactttct
    38401 tgtttataat taattgtttc agaaaaagct gtatttccat taagtccacc agataaacca
    38461 ttagagatac taatgtcacc accaaatgta tagcctaaag tattttgaac ttgaaactct
    38521 tcattttgat tttttggtgc ataatcaacg acgtttactg aatcattaga ttgtgagctt
    38581 atagatacat tgtatttagc tccccaatat aattttgaaa agtcatagtc attaggatta
    38641 ggtttcacaa agcctgagtt aatattccca gtagctttaa gtactaaagt atctttatca
    38701 taacttttat ctttgatgaa attaaatgtt aaaatctgtg aaattttaaa tttatcagaa
    38761 tctgctgtgg ctgttgtttt gtataaagta actttgtcat cgactttttt tacgctgact
    38821 ggtgttattt taccttcagc attagcagta ccagaaagta ataataatgc catagatgta
    38881 gcaacggatg atttgactaa tttattcatt ttcatatcaa ttctgtcctt tcaccttgat
    38941 ttcatgagtc ttccaattga cctcgtattt cacagtatag tttctattta caaatgcatt
    39001 atggactcta tgtccgtcta aataactgtt gccataatgc gttgatcttt taatggcatg
    39061 agtgacatcc atgtttcttc cgtaagtaat ttcaaattcg cttgtatcgc ttgaaccttt
    39121 ttcatgagat actgtggcga taaatgaagg gttaaatcca ctttgtacaa gaggtggtaa
    39181 ctcactgtct ggaacgaaat aatctctagg atctttacta tgaggtttgt agcctacaaa
    39241 taaatcgcta tcaaaggctg atttttgacc tgattcagtg gcgaatgaat tcgctttgac
    39301 gccccataaa acactttttg agttttgttg ttctacttca cttacataat tttgttgtgt
    39361 atagctaatc gatttagaat agttaaatga tccattacca ccgagtgatg gggctgattg
    39421 gaaattacca ccgatattgt atcctaatgt ctgactcacg tttgtagatt caattttatt
    39481 tttaggtaaa taattaatta aagaaacata tttatcattt gtttttaaac caatattata
    39541 ttggaatggc catcgcatag ctttaacatg attagttttt ttatagttgt aatatgttgt
    39601 tctagagcta atgaatcctt gcatctttaa tatcaaagca tctttgttat attttttatc
    39661 ctttacaaaa tcaaattgaa tattttgagt cacgccccat ttattacttg ttttatcttc
    39721 tgtccttttg ataatttcta tatcgcttcc tttaccgatg tcttcagtat cgttagcagc
    39781 tttagcattt tctaataacg gattg
//
LOCUS       DAMQWL010000009        39114 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.009, whole genome shotgun sequence.
ACCESSION   DAMQWL010000009 DAMQWL010000000
VERSION     DAMQWL010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 39114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39114
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.009"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            832..2169
                     /locus_tag="PF788_000491"
     CDS             832..2169
                     /locus_tag="PF788_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDG6302780.1"
                     /translation="MKQPILNKLESLNQEEAISLHVPGHKNMTIGHLSQLSMTMDKTE
                     IPGLDDLHHPEEVILESMKQVEKHSDYDAYFLVNGTTSGILSVIQSFSQKKGDILMAR
                     NVHKSVLHALDISQQEGHFIETHQSPLTNHYNKVNLSRLNNDGHKLAVLTYPNYYGET
                     FNVEEVIKFLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMG
                     SVLYIHKNAPYRETIIEYLSYFQTSSPSYLIMASLESAAEFYKTYDSTVFFDKRAQLI
                     ECLEKKGFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADDYQALAILPLWH
                     HDDTYLFDSLLRKIEDMILPKKSVSKVKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGK
                     VLARHIVPYPPGIPIIFKGETITENMIELVNEYLETGMIVEGIKNNKILVEDE"
     gene            2171..2788
                     /locus_tag="PF788_000492"
     CDS             2171..2788
                     /locus_tag="PF788_000492"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDG6302781.1"
                     /translation="MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTG
                     EEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQG
                     YARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFH
                     EKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI"
     gene            2816..3145
                     /locus_tag="PF788_000493"
     CDS             2816..3145
                     /locus_tag="PF788_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019467733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP receptor"
                     /protein_id="HDG6302782.1"
                     /translation="MKMIIAIVQDQDSQELADQLVKNNFRATKLATTGGFLRAGNTTF
                     LCGVNDDRVDEILSVINQTCGNREQLVSPITPMGGSADSYIPYPVEVEVGGATVFVMP
                     VDAFHQF"
     gene            3359..4285
                     /locus_tag="PF788_000494"
     CDS             3359..4285
                     /locus_tag="PF788_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDG6302783.1"
                     /translation="MDEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLILCQ
                     TDSQCETKVSTYNHPDFMYISTTENAIKKEQVEQLVRHMNQLPIESTNKVYIIEDFEK
                     LTVQGENSILKFLEEPPDNTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRLV
                     EQNMSKPVAEMISTYTTQIDNAMALNEEFDLLALRKSVIRWCELLLTNKPMALIGIID
                     LLKQAKNKKLQSLTIAAVNGFFEDIIHTKVNVEDKQIYSDLKNDIDQYAQKLSFNQLI
                     LMFDQLTEAHKKLNQNVNPTLVFEQIVIKGVS"
     gene            4286..5089
                     /locus_tag="PF788_000495"
     CDS             4286..5089
                     /locus_tag="PF788_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage 0 sporulation family protein"
                     /protein_id="HDG6302784.1"
                     /translation="MPNVIGVQFQKAGKLEYYTPNDIQVDIEDWVVVESKRGIEIGIV
                     KNPLMDIAEEDVVLPLKNIIRIADDKDIDKFNCNERDAENALILCKDIVREQGLDMRL
                     VNCEYTLDKSKVIFNFTADDRIDFRKLVKILAQHLKTRIELRQIGVRDEAKLLGGIGP
                     CGRSLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGACGRLMCCLKYENDYYEEVRAQ
                     LPDIGEAIETPDGNGKVVALNILDISMQVKLEGHEQPLEYKLEEIETMH"
     gene            5106..5453
                     /gene="yabA"
                     /locus_tag="PF788_000496"
     CDS             5106..5453
                     /gene="yabA"
                     /locus_tag="PF788_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499035.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HDG6302785.1"
                     /translation="MDRNEIFEKIMRLEMNVNQLSKETSELKALAVELVEENVALQLE
                     NDNLKKVLGNDEPTTIDTANSKPAKAVKKPLPSKDNLAILYGEGFHICKGELFGKHRH
                     GEDCLFCLEVLSD"
     gene            5727..6452
                     /locus_tag="PF788_000497"
     CDS             5727..6452
                     /locus_tag="PF788_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HDG6302786.1"
                     /translation="MLKENERFDQLIKEDFSIIQNDDVFSFSTDALLLGHFTKPRTKD
                     IVLDLCSGNGVIPLLLFAKHPRHIEGVEIQKTLVDMARRTFQFNDVDEYLTMHHMDLK
                     NVTKVFKPSQYTLVTCNPPYFKENQQHQHQKEAHKIARHEIMCTLEDCMIAARHLLKE
                     GGRLNMVHRAERLMDVLFEMRKVNIEPKKVVFIYSKVGKSAQTIVVEGRKGGNQGLEI
                     MPPFYIYNEDGNYSEEMKEVYYG"
     gene            6445..6693
                     /locus_tag="PF788_000498"
     CDS             6445..6693
                     /locus_tag="PF788_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HDG6302787.1"
                     /translation="MDSHFVYIVKCSDGSLYTGYAKDVNARVEKHNRGQGAKYTKVRR
                     PVHLVYQEMYETKSEALKREYEIKTYTRQKKLRLIKER"
     gene            6695..7534
                     /gene="rsmI"
                     /locus_tag="PF788_000499"
     CDS             6695..7534
                     /gene="rsmI"
                     /locus_tag="PF788_000499"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDG6302788.1"
                     /translation="MAVLYLVGTPIGNLADITYRAVDVLKRVDMIACEDTRVTSKLCN
                     HYDIPTPLKSYHEHNKDKQTAFIIEQLELGLDVALVSDAGLPLISDPGYELVVAAREA
                     NIKVETVPGPNAGLTALMASGLPSYVYTFLGFLPRKEKEKSAVLEQRMHENSTLIIYE
                     SPHRVTDTLKTIAKIDATRQVSLGRELTKKFEQIVTDDVTQLQALIQQGDVPLKGEFV
                     ILIEGAKANNEISWFDDLSINEHVDHYIQTSQMKPKQAIKKVAEERQLKTNEVYNIYH
                     QIS"
     gene            7819..9792
                     /gene="metG"
                     /locus_tag="PF788_000500"
     CDS             7819..9792
                     /gene="metG"
                     /locus_tag="PF788_000500"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDG6302789.1"
                     /translation="MAKETFYITTPIYYPSGNLHIGHAYSTVAGDVIARYKRMQGYDV
                     RYLTGTDEHGQKIQEKAQKSGKTEIEYLDEMIAGIKQLWAKLEISNDDFIRTTEERHK
                     HVVEQVFERLLKQGDIYLGEYEGWYSVPDETYYTESQLVDPQYENGKIIGGKSPDSGH
                     EVELVKEESYFFNISKYTDRLLEFYDQNPDFIQPPSRKNEMINNFIKPGLADLAVSRT
                     SFNWGVHVPSNPKHVVYVWIDALVNYISALGYLSDDESLFNKYWPADIHLMAKEIVRF
                     HSIIWPILLMALDLPLPKKVFAHGWILMKDGKMSKSKGNVVDPNILIDRYGLDATRYY
                     LMRELPFGSDGVFTPEAFVERTNFDLANDLGNLVNRTISMVNKYFDGELPAYQGPLHE
                     LDEEMEAMALETVKSYTESMESLQFSVALSTVWKFISRTNKYIDETTPWVLAKDDSQK
                     DMLGNVMAHLVENIRYAAVLLRPFLTHAPKEIFEQLNINNPQFMEFSSLEQYGVLNES
                     IMVTGQPKPIFPRLDSEAEIAYIKESMQPPATKEEKEEIPSKPQIDIKDFDKVEIKAA
                     TIIDAEHVKKSDKLLKIQVDLDSEQRQIVSGIAKFYTPDDIIGKKVAVVTNLKPAKLM
                     GQKSEGMILSAEKDGVLTLVSLPSAIPNGAVIK"
     gene            9823..10596
                     /locus_tag="PF788_000501"
     CDS             9823..10596
                     /locus_tag="PF788_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDG6302790.1"
                     /translation="MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIE
                     RAMKLIDEYDFLYGIIGWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKS
                     PADVQKEVFRKQIALAKRLKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPE
                     IADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRN
                     EPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFNLNS"
     gene            10763..11299
                     /gene="rnmV"
                     /locus_tag="PF788_000502"
     CDS             10763..11299
                     /gene="rnmV"
                     /locus_tag="PF788_000502"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HDG6302791.1"
                     /translation="MKINEFIVVEGRDDTERVKRAVECDTIETNGSAINEQTLEVIRN
                     AQQSRGVIVLTDPDFPGDKIRSTITEHVKGVKHAYIDREKAKNKKGKIGVEHAELIDI
                     KEALMHVSSPFDEAYESIDKSVLIELGLIVGKDARRRREILSRKLRIGHSNGKQLLKK
                     LNAFGYTEADVRQALEDE"
     gene            11310..12203
                     /gene="rsmA"
                     /locus_tag="PF788_000503"
     CDS             11310..12203
                     /gene="rsmA"
                     /locus_tag="PF788_000503"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDG6302792.1"
                     /translation="MLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIID
                     ASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVIN
                     EDILKANIKEAVENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEV
                     GERLNAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLV
                     TVDNEEAFFKLAKAAFAQRRKTINNNYQNYFKDGKQHKEVILQWLEQAGIDPRRRGET
                     LSIQDFAKLYEEKKKFPQLEN"
     gene            12303..12566
                     /locus_tag="PF788_000504"
     CDS             12303..12566
                     /locus_tag="PF788_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Veg family protein"
                     /protein_id="HDG6302793.1"
                     /translation="MPKSILDIKNSIDCHVGNRIVLKANGGRKKTIKRSGILKETYPS
                     VFIVELDQDKHNFERVSYTYTDVLTENVQVSFEEDNHHESIAH"
     gene            12876..13724
                     /locus_tag="PF788_000505"
     CDS             12876..13724
                     /locus_tag="PF788_000505"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDG6302794.1"
                     /translation="MIYETAPAKINFTLDTLFKRNDGYHEIEMIMTTVDLNDRLTFHK
                     RKDRKIVVEIEHNYVPSNHKNLAYRAAQLFIEQYQLKQGVTISIDKEIPVSAGLAGGS
                     ADAAATLRGLNRLFDIGASLEELALLGSKIGTDIPFCIYNKTALCTGRGEKIEFLNKP
                     PSAWVILAKPNLGISSPDIFKLINLDKRYDVHTKMCYEALENRDYQQLCQSLSNRLEP
                     ISVSKHPQIDKLKNNMLKSGADGALMSGSGPTVYGLARKESQAKNIYNAVNGCCNEVY
                     LVRLLG"
     gene            13738..14562
                     /gene="purR"
                     /locus_tag="PF788_000506"
     CDS             13738..14562
                     /gene="purR"
                     /locus_tag="PF788_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HDG6302795.1"
                     /translation="MRYKRSERIVFMTQYLMNHPNKLIPLTFFVKKFKQAKSSISEDV
                     QIIKNTFQKEKLGTVITTAGASGGVTYKPMMSKEEATEVVNEVITLLEEKERLLPGGY
                     LFLSDLVGNPSLLNKVGKLIASIYMEEKLDAVVTIATKGISLANAVANILNLPVVVIR
                     KDNKVTEGSTVSINYVSGSSRKIETMVLSKRTLAENSNVLVVDDFMRAGGSINGVMNL
                     MNEFKAHVKGVSVLVESKEVKQRLIEDYTSLVKLSDVDEYNQEFNVEPGNSLSKFS"
     gene            14579..14959
                     /locus_tag="PF788_000507"
     CDS             14579..14959
                     /locus_tag="PF788_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDG6302796.1"
                     /translation="MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNIDGHIVSAD
                     VQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDMNDFQKINEVYGQYFNEHKPARS
                     CVEVARLPKDVKVEIELVSKIKEL"
     gene            15031..15333
                     /gene="spoVG"
                     /locus_tag="PF788_000508"
     CDS             15031..15333
                     /gene="spoVG"
                     /locus_tag="PF788_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation regulator SpoVG"
                     /protein_id="HDG6302797.1"
                     /translation="MKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLF
                     VAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVMKVYDETDEVVPDKNATSEDSEEA"
     gene            15523..15654
                     /locus_tag="PF788_000509"
     CDS             15523..15654
                     /locus_tag="PF788_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302798.1"
                     /translation="MRLNDARIFEVRKKLFLKLQRIKNNAFYMLKEYCRLNYNNDEV"
     gene            15677..17029
                     /gene="glmU"
                     /locus_tag="PF788_000510"
     CDS             15677..17029
                     /gene="glmU"
                     /locus_tag="PF788_000510"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDG6302799.1"
                     /translation="MRRHAIILAAGKGTRMKSKKYKVLHEVAGKPMVEHVLESVKGSG
                     VDQVVTIVGHGAESVKGHLGERSLYSFQEEQLGTAHAVQMAKSHLEDKEGTTIVVCGD
                     TPLITKETLETLIAHHEDANAQATVLSASIQQPYGYGRIVRNASGRLERIVEEKDATQ
                     AEKDINEISSGIFAFNNKTLFEKLTQVKNDNAQGEYYLPDVLSLILNDGGIVEVYRTN
                     DVEEIMGVNDRVMLSQAEKAMQRRTNHYHMLNGVTIIDPDSTYIGPDVTIGSDTVIEP
                     GVRINGRTEIGEDVVIGQYSEINNSTIENGACIQQSVVNDASVGANTKVGPFAQLRPG
                     AQLGADVKVGNFVEIKKADLKDGAKVSHLSYIGDAVIGERTNIGCGTITVNYDGENKF
                     KTIVGKDSFVGCNVNLVAPVTIGDDVLVAAGSTITDDVPNDSLAVARARQTTKEGYRK
                     "
     gene            17176..18141
                     /locus_tag="PF788_000511"
     CDS             17176..18141
                     /locus_tag="PF788_000511"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HDG6302800.1"
                     /translation="MLNNEYKNSSLKIFSLKGNEALAQEVADQVGIELGKCSVKRFSD
                     GEIQINIEESIRGCDVFIIQPTSYPVNLHLMELLIMIDACKRASAATINIVVPYYGYA
                     RQDRKARSREPITAKLVANLIETAGATRMIALDLHAPQIQGFFDIPIDHLMGVPILAK
                     HFKDDPNINPEECVVVSPDHGGVTRARKLADILKTPIAIIDKRRPRPNVAEVMNIVGE
                     IEGRTAIIIDDIIDTAGTITLAAQALKDKGAKEVYACCTHPVLSGPAKERIENSAIKE
                     LIVTNSIHLDEDRKPSNTKELSVAGLIAQAIIRVYERESVSVLFD"
     gene            18291..18944
                     /locus_tag="PF788_000512"
     CDS             18291..18944
                     /locus_tag="PF788_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDG6302801.1"
                     /translation="MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVD
                     EVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTV
                     EVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVK
                     VTGDFKIENDSAESVVTVVAPTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE"
     gene            19255..19827
                     /locus_tag="PF788_000513"
     CDS             19255..19827
                     /locus_tag="PF788_000513"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDG6302802.1"
                     /translation="MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSLDKQKFKG
                     AYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRL
                     RQKGSAGGHNGMKSIIKMLGTDQFKRIRIGVGRPTNGMTVPDYVLQRFSNDEMVTMEK
                     VIEHAARAIEKFVETSRFDHVMNEFNGEVK"
     gene            19827..23333
                     /gene="mfd"
                     /locus_tag="PF788_000514"
     CDS             19827..23333
                     /gene="mfd"
                     /locus_tag="PF788_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDG6302803.1"
                     /translation="MTILTTLIKEDNHFQDLNQVFGQANTLVTGLSPSAKVTMIAEKY
                     AQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKYPVQDIMTEEFSTQSPQLMSERI
                     RTLTALAQGKKGLFIVPLNGLKKWLTPVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGY
                     KRESVVSHIGEFSLRGGIIDIFPLIGEPIRIELFDTEIDSIRDFDVETQRSKDNVEEV
                     DITTASDYIITEEVISHLKEELKTAYENTRPKIDKSVRNDLKETYESFKLFESTYFDH
                     QILRRLVAFMYETPSTIIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGN
                     GFIGQSFIKYDDFETLIEGYPVTYFSLFATTMPIKLNHIIKFSCKPVQQFYGQYDIMR
                     SEFQRYVNQNYHIVVLVETETKVERMQAMLSEMHIPSITKLHRSMSSGQAVIIEGSLS
                     EGFELPDMGLVVITERELFKSKQKKQRKRTKAISNAEKIKSYQDLNVGDYIVHVHHGV
                     GRYLGVETLEVGQTHRDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKTPKLNKLGGS
                     EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA
                     KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQ
                     HYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKD
                     LGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPP
                     ENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANI
                     AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQL
                     YQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRG
                     AGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDAYLPTE
                     YIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARLLDIVEIKVHALHS
                     GITLIKDKGKIIDIHLSVKATENIDGEVLFKATQPLGRTMKVGVQNNAMTITLTKQNQ
                     WLDSLKFLVKCIEESMRISDEA"
     gene            23323..24849
                     /locus_tag="PF788_000515"
     CDS             23323..24849
                     /locus_tag="PF788_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HDG6302804.1"
                     /translation="MKHKEAFNGVVVLTAALIVIKILSAVYRIPYQNILGDTGLYAYQ
                     QVYPIVALGMILSMNAIPSAITQNIGKYHSDEAYAKAVAYIQLVGILLFIAIFVFANN
                     IAHMMGDGHLTPMIQAASLSFIFIGMLGVLRGYYQSANNMTVPAISQVIEQVIRVGII
                     IVTIVIFVDRGWTIYEAGTIAILASTIGFLGSSIYLVAHRPFKFKMVNNTAKIVWKQF
                     ALSVLIFAISQLIVILWQVIDSVTIIKSLQAIRVPFDVAITEKGVYDRGASFIQMGLI
                     VTTTFSFALIPLLSDAIKMNNQVLMNRYANASLKITILISTAAGIGLINLLPLMNGVF
                     FKTNDLTLTLSVYMITVICVSLIMMDMALLQAQHAVRPIFVGMTAGLVIKFILNIILI
                     RLSGIIGASISTVVSLIIFGTIIHIAVTRKYHLYAMRRFFINVVLGMVFMSIVVQCVL
                     NIVTTHGRITGLIELLCAAVLGIIALFFYIFRFNVLTYKELTYLPFGSKLYQIKKGRR
                     "
     gene            24849..26042
                     /locus_tag="PF788_000516"
     CDS             24849..26042
                     /locus_tag="PF788_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HDG6302805.1"
                     /translation="MAHTITIVGLGNYGIDDLPLGIYKFLKTQDKVYARTLDHPVIES
                     LQDELTFQSFDHVYEAHNQFEDVYIDIVAQLVEAANEKDIVYAVPGHPRVAETTTVKL
                     LALAKDNTDIDVKVLGGKSFIDDVFEAVNVDPNDGFTLLDATSLQEVTLNVRTHTLIT
                     QVYSAMVAANLKITLMERYPDDYPVQIVTGARSDGADNVVTCPLYELDHDENAFNNLT
                     SVFVPKIITSTYLYHDFDFATEVIDTLVDEDKGCPWDKVQTHETLKRYLLEETFELFE
                     AIDNEDDWHMIEELGDILLQVLLHTSIGKKEGYIDIKEVITSLNAKMIRRHPHIFGDA
                     NAETIDDLKEIWSKAKDAEGKQPRVIFEKVFAEHFLNLYEKTKDKSFDEAALKQWLEK
                     GESNT"
     gene            26039..26302
                     /locus_tag="PF788_000517"
     CDS             26039..26302
                     /locus_tag="PF788_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HDG6302806.1"
                     /translation="MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVE
                     DVLTIRFGQKLVTVKVTALNEHASKDNAKGMYEIIEERRLEEA"
     gene            26320..26712
                     /locus_tag="PF788_000518"
     CDS             26320..26712
                     /locus_tag="PF788_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HDG6302807.1"
                     /translation="MKNKVEHIENQYTSQENKKKQRQKMKMRVVRRRITVFAGVLLAI
                     IVVLSILLVVQKHRNDIDAQERKAKEAQFQKQQNEEIALKEKLNNLNDKDYIEKIARD
                     DYYLSNKGEVIFRLPEDKDSSSSKSSKK"
     gene            26817..27218
                     /locus_tag="PF788_000519"
     CDS             26817..27218
                     /locus_tag="PF788_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein S1"
                     /protein_id="HDG6302808.1"
                     /translation="MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVE
                     NVEEHLSVGDEVDVKVLSIADDGKISLSIKKAKDRPRRQHTSKPSHQKPVQKAEDFEK
                     KLSNFLKDSEDKLTSIKRQTESRRGGKGSRR"
     gene            27398..28693
                     /gene="tilS"
                     /locus_tag="PF788_000520"
     CDS             27398..28693
                     /gene="tilS"
                     /locus_tag="PF788_000520"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDG6302809.1"
                     /translation="MQLNSNGWHVDDHIVVAVSTGIDSMCLLYQLLNDYKDSYRKLTC
                     LHVNHGVRSASIEEARFLEAYCERHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWF
                     DEMMNVLEADVLLTAHHLDDQLETIMYRIFNGKSTRNKLGFDELSKRKGYQIYRPLLA
                     VSKKEIKQFQERYHIPYFEDESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQW
                     HDEQYDILQYSAKQFIQEFVKFDEQSKYLEVSRQAFNNLPNSLKMVVLDCLLSKYYEL
                     FNISAKTYEEWFKQFSSKKAQFSINLTDKWIIQIAYGKLIIMAKNNGDTYFRVQTIKK
                     PGNYIFNKYRLEIHSNLPKCLFPLTVRTRQSGDTFKLNGRDGYKKVNRLFIDCKVPQW
                     VRDQMPIVLDKQQRIIAVGDLYQQQTIKKWIIISKNGDE"
     gene            28698..29237
                     /gene="hpt"
                     /locus_tag="PF788_000521"
     CDS             28698..29237
                     /gene="hpt"
                     /locus_tag="PF788_000521"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDG6302810.1"
                     /translation="MHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGS
                     AMFMSDLIKRIDTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILE
                     TGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYR
                     ELYRNLPYIGTLKPEVYSN"
     gene            29494..31587
                     /gene="ftsH"
                     /locus_tag="PF788_000522"
     CDS             29494..31587
                     /gene="ftsH"
                     /locus_tag="PF788_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDG6302811.1"
                     /translation="MQKAFRNVLVIVIIGVIIFGLFSYLNGNGNMPKQLTYNQFTEKL
                     EKGDLKTLEIQPQQNVYMVSGKTKNDEDYSSTILYNNEKELQKITDAAKKQNGVKLTI
                     KEEEKQSVFVSILSTLIPVVVIALLFIFFLSQAQGGGSGGRMMNFGKSKAKMYDNNKR
                     RVRFSDVAGADEEKQELIEIVDFLKDNKKFKEMGSRIPKGVLLVGPPGTGKTLLARAV
                     AGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCIIFIDEIDAVGRQRGAG
                     VGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPALLRPGRFDRQIQVGR
                     PDVKGREAILHVHAKNKPLDETVDLKAISQRTPGFSGADLENLLNEASLIAVREGKKK
                     IDMRDIEEATDRVIAGPAKKSRVISKKERNIVAHHEAGHTIIGMVLDEAEVVHKVTIV
                     PRGQAGGYAMMLPKQDRFLMTEQELLDKICGLLGGRVSEDINFNEVSTGASNDFERAT
                     QIARSMVTQYGMSKKLGPLQFGHSNGQVFLGKDMQGEPNYSSQIAYEIDKEVQRIVKE
                     QYERCKQILLEHKEQLILIAETLLTEETLVAEQIQSLFYEGKLPEIDYDAAKVVKDED
                     SEFNDGKFGKSYEEIRKEQLEDGQRDESEDRKEEKDIAEDKKEADKSDEKDEPAHQQA
                     PNIEKPYDPNHPDNK"
     gene            31816..32697
                     /gene="hslO"
                     /locus_tag="PF788_000523"
     CDS             31816..32697
                     /gene="hslO"
                     /locus_tag="PF788_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDG6302812.1"
                     /translation="MTHDYIVKALAFDGEIRAYAALTTETVQEAQTRHYTWPTASAAM
                     GRTMTATAMMGAMLKGDQKLTVTVDGQGPIGRIIADANAKGEVRAYVDHPQTHFPLNE
                     QGKLDVRRAVGTNGSIMVVKDVGMKDYFSGASPIVSGELGEDFTYYYATSEQTPSSVG
                     LGVLVNPDNTIKAAGGFIIQVMPGAKDETISKLEKAISEMTPVSKLIEQGLTPEGLLN
                     EILGEDHVQILEKMPVQFECNCSHEKFLNAIKGLGEAEIQNMIKEDHGAEAVCHFCGN
                     KYKYTEEELNVLLESLA"
     gene            32876..33808
                     /gene="cysK"
                     /locus_tag="PF788_000524"
     CDS             32876..33808
                     /gene="cysK"
                     /locus_tag="PF788_000524"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDG6302813.1"
                     /translation="MAQKPVDNITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGS
                     VKDRIALAMIEKAEREGKIKPGDTIVEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQ
                     ERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEEHGYFEPQQFENPANPEVHELTTG
                     PELLQQFEGKTIDAFLAGVGTGGTLSGVGKVLKKEYPNIEIVAIEPEASPVLSGGEPG
                     PHKLQGLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAA
                     IQKAKELGKGKTVVTVLPSNGERYLSTPLYSFDD"
     gene            34024..34827
                     /gene="folP"
                     /locus_tag="PF788_000525"
     CDS             34024..34827
                     /gene="folP"
                     /locus_tag="PF788_000525"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDG6302814.1"
                     /translation="MTKTKIMGILNVTPDSFSDGGKFNNVESAINRVKAMIDEGADII
                     DVGGVSTRPGHEMVSLEEEMNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDMI
                     NDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIP
                     SNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVE
                     RDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS"
     gene            34805..35170
                     /gene="folB"
                     /locus_tag="PF788_000526"
     CDS             34805..35170
                     /gene="folB"
                     /locus_tag="PF788_000526"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDG6302815.1"
                     /translation="MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLAEAGR
                     TDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKEN
                     PPIPGHYDGVGIEIVRENK"
     gene            35167..35643
                     /gene="folK"
                     /locus_tag="PF788_000527"
     CDS             35167..35643
                     /gene="folK"
                     /locus_tag="PF788_000527"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDG6302816.1"
                     /translation="MIQAYLGLGSNIGDRESQLNDAIKILNEYDGINVSNISPIYETA
                     PVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYG
                     EEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK"
     gene            36037..36129
                     /locus_tag="PF788_000528"
     CDS             36037..36129
                     /locus_tag="PF788_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302817.1"
                     /translation="MVNDKVLETSKEMYVEQKCLIFYKTLKENV"
     gene            36182..37669
                     /gene="lysS"
                     /locus_tag="PF788_000529"
     CDS             36182..37669
                     /gene="lysS"
                     /locus_tag="PF788_000529"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDG6302818.1"
                     /translation="MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDLKEEW
                     DQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDDEF
                     DLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
                     QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTH
                     HNALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAY
                     ADYHDIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFY
                     EVKSDEEAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLA
                     KKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDE
                     DYIEALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK"
     gene            38227..38341
                     /gene="rrf"
                     /locus_tag="PF788_000530"
     rRNA            38227..38341
                     /gene="rrf"
                     /locus_tag="PF788_000530"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            38354..38429
                     /locus_tag="PF788_000531"
     tRNA            38354..38429
                     /locus_tag="PF788_000531"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38387..38389,aa:Val,seq:tac)
     gene            38446..38521
                     /locus_tag="PF788_000532"
     tRNA            38446..38521
                     /locus_tag="PF788_000532"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38479..38481,aa:Thr,seq:tgt)
     gene            38528..38600
                     /locus_tag="PF788_000533"
     tRNA            38528..38600
                     /locus_tag="PF788_000533"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38561..38563,aa:Lys,seq:ttt)
     gene            38634..38708
                     /locus_tag="PF788_000534"
     tRNA            38634..38708
                     /locus_tag="PF788_000534"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38666..38668,aa:Gly,seq:gcc)
     gene            38716..38804
                     /locus_tag="PF788_000535"
     tRNA            38716..38804
                     /locus_tag="PF788_000535"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38750..38752,aa:Leu,seq:taa)
     gene            38810..38886
                     /locus_tag="PF788_000536"
     tRNA            38810..38886
                     /locus_tag="PF788_000536"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38844..38846,aa:Arg,seq:acg)
     gene            38907..38980
                     /locus_tag="PF788_000537"
     tRNA            38907..38980
                     /locus_tag="PF788_000537"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38941..38943,aa:Pro,seq:tgg)
     gene            39004..39079
                     /locus_tag="PF788_000538"
     tRNA            39004..39079
                     /locus_tag="PF788_000538"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:39037..39039,aa:Ala,seq:tgc)
BASE COUNT        14038 a         5300 c         7941 g        11835 t
ORIGIN      
        1 tgtctaaaac gtcaaaataa aaagcaaaca caaagaaaaa tggcttggcg aagtgaaaac
       61 gtttgaatct gacgaaacga gaaaagagcg caacgagttt agtagagcta aatgagtaag
      121 cgagagccga agaagaggaa agaagcaagc gattgtcaca agtcaagaaa ggtctttagc
      181 gacgatggta gccaacttac gttccgctag agtagaacgt tgccaggcaa gttgagaccg
      241 tgaggtctct ttttttatgt ctaaaacgtc aaaataaaaa gtaaacacaa agaaaaatgg
      301 cttggcgaag tgaaaacgtt tgaatctgac gaaacgagaa aagagcgcaa cgagtttagt
      361 agagctaaat gagtaagcga gagccgaagg agaggaaaga agcaagcgat tgtcacaagt
      421 caagaaaggt tcttagcgag gatggtagct aacttacgtt ccgctagagt agaacgttgc
      481 tagacaagaa atgaatgcga tgagccgcat tgagtgtgaa attgatattt taataatgtg
      541 cacttttgat tatttaaatc tgtgactaga agtataagtg aagacattca gaagtattat
      601 aaaaagtgaa cagcagtaag atagttttta atcataaatc atcttactgc tgtttttaga
      661 ttttatgtct aatatctttt aaatcgaagt acaaaaagga aattaattat tatacaatag
      721 acaagctatt gcataagtaa cactaacttt tgtcaaagaa gtgttactat ataattaata
      781 cttttgaaag taactaattc caaaacagtg taaataaagg aagcgtatat catgaagcaa
      841 cctattttaa ataaattaga aagtttaaat caagaagaag cgatttcttt gcatgttccg
      901 ggtcataaaa atatgactat cggtcattta tctcaattat caatgacaat ggataaaact
      961 gaaatacctg gattagatga tttacatcat cctgaagaag tcattttgga aagtatgaag
     1021 caggtggaga aacattcaga ttatgatgct tatttcttag tgaatggcac cacttcagga
     1081 atattatctg tcatccagtc tttttcacag aaaaaaggcg atatcttaat ggcaagaaat
     1141 gtacataaat ctgtgttaca tgcgctcgat attagccaac aagaagggca ttttattgaa
     1201 acgcatcaaa gtccgttaac gaatcattat aataaagtta atttaagccg tttgaataat
     1261 gacggtcaca aacttgctgt gttgacttat cctaactatt acggtgaaac atttaatgta
     1321 gaagaggtta tcaaattttt gcaccaatta aatattcctg tactcattga cgaagcacac
     1381 ggcgcgcact ttggattgca aggatttcca gattctacat taaattatca agctgactat
     1441 gttgttcaat cttttcataa aacgttacca gctttaacga tgggctcggt actttatatt
     1501 cataaaaatg caccttatag agaaactatt atagaatatc taagctactt ccaaacatct
     1561 agtccttcgt atttgattat ggctagttta gagtcagctg ccgagttcta taaaacatat
     1621 gatagtaccg tgttttttga taagagagcg caattaatcg aatgtttgga gaagaagggt
     1681 tttgaaatgc ttcaagttga tgatccgttg aagttgctga taaaatatga aggttttaca
     1741 ggtcatgata ttcaaaattg gtttatgaat gcacatatct atttagaatt agcggacgac
     1801 tatcaagcat tagcgatatt gccgttatgg catcatgatg atacgtattt atttgattcg
     1861 cttttacgta aaattgaaga tatgatttta ccgaaaaaat cagtttctaa agttaaacaa
     1921 acacaacttt taacaactga aggtaactat aaaccaaaac gctttgaata tgttacttgg
     1981 tgtgatttga aaaaggcaaa aggtaaagtt ctggcgcgac atattgtccc gtatccgcca
     2041 gggattccta ttattttcaa aggagaaaca ataactgaaa atatgataga attggtaaat
     2101 gaatatctgg aaactggaat gatagttgaa ggaattaaaa ataataaaat tttagttgag
     2161 gatgaataaa atgtcagctt ttataacttt tgagggccca gaaggctctg gaaaaacaac
     2221 tgtaattaat gaagtttacc atagattagt aaaagattat gatgtcatta tgactagaga
     2281 accaggtggt gttcctactg gtgaagaaat acgtaaaatt gtattagaag gcaatgatat
     2341 ggacattaga actgaagcaa tgttatttgc tgcatctaga agagaacatc ttgtattaaa
     2401 ggtcatacca gctttaaaag aaggtaaggt tgtgttgtgt gatcgctata tcgatagttc
     2461 attagcttat caaggttatg ctagagggat tggcgttgaa gaagtaagag cattaaacga
     2521 atttgcaata aatggattat atccagactt gacgatttat ttaaatgtta gtgctgaagt
     2581 aggtcgcgaa cgtattatta aaaattcaag agatcaaaat agattagatc aagaagattt
     2641 aaagtttcac gaaaaagtaa ttgaaggtta ccaagaaatc attcataatg aatcacaacg
     2701 gttcaaaagc gttaatgcag atcaacctct tgaaaatgtt gttgaagaca cgtatcaaac
     2761 tatcatcaaa tatttagaaa agatatgata taattgttag aagaggtgtt ataaaatgaa
     2821 aatgattata gcgatcgtac aagatcaaga tagtcaggaa cttgcagatc aacttgttaa
     2881 aaataacttt agagcaacaa aattggcaac aacaggtggg tttttaagag cgggtaatac
     2941 aacattctta tgtggtgtca atgatgaccg tgtagatgaa atattgtctg tgattaatca
     3001 aacgtgtggt aatagagaac agttggtttc acctattaca cctatgggag gcagtgcgga
     3061 ttcgtacatt ccatatccag ttgaagttga agttggcggt gctactgtat ttgttatgcc
     3121 agttgatgca ttccatcaat tttaattcta taatacaatc atcaattaga gatacttaaa
     3181 atagtgtatt aataagttat taacaatttt gggttgcttg actgcgacta gttcagatgc
     3241 caatagattt gatttttgtg gttctaaaaa taatcacaaa tcatggtcgc tattgttgca
     3301 gtaattagtt gctctttggc aaccttttta tataaaagca aaagggagtt tgtaatgaat
     3361 ggatgaacag caacaattga cgaatgcata tcattcaaat aaattatcgc atgcctattt
     3421 atttgaaggt gatgatgcac aaacgatgaa acaagttgcg attaattttg caaagcttat
     3481 tttatgtcaa acagatagtc aatgtgaaac aaaggttagt acatataatc atccagactt
     3541 tatgtatata tcaacaactg agaatgcaat taagaaagaa caagttgaac aacttgtgcg
     3601 tcatatgaat caacttccta tagaaagcac aaataaagtg tacatcattg aagactttga
     3661 aaagttaact gttcaagggg aaaacagtat cttgaaattt cttgaagaac caccggacaa
     3721 tacgattgct attttattgt ctacaaaacc tgagcaaatt ttagacacaa tccattcaag
     3781 atgtcagcat gtatatttca agcctattga taaagaaaag tttataaata gattagttga
     3841 acaaaacatg tctaagccag tagctgaaat gattagtact tatactacgc aaatagataa
     3901 tgcaatggct ttaaatgaag aatttgattt attagcatta aggaaatcag ttatacgttg
     3961 gtgtgaattg ttgcttacta ataagccaat ggcacttata ggtattattg atttattgaa
     4021 acaggctaaa aataaaaaac tgcaatcttt aactattgca gctgtgaatg gtttcttcga
     4081 agatatcata catacaaagg taaatgtaga ggataaacaa atatatagtg atttaaaaaa
     4141 tgatattgat caatatgcgc aaaagttgtc gtttaatcaa ttaattttga tgtttgatca
     4201 actgacggaa gcacataaga aattgaatca aaatgtaaat ccaacgcttg tatttgaaca
     4261 aatcgtaatt aagggtgtga gttagatgcc aaatgtaata ggtgttcagt ttcaaaaagc
     4321 gggaaaatta gaatattata cacctaatga tatacaagta gatatagaag actgggtagt
     4381 tgtcgaatct aaaagaggca tagagatagg tattgttaaa aatccattaa tggatattgc
     4441 tgaagaggat gttgtgttac ctcttaaaaa tattattcgc attgctgatg acaaagatat
     4501 tgataaattt aattgtaatg aacgagatgc tgaaaatgca ttaatactat gtaaagacat
     4561 tgtaagagaa caaggtttgg acatgcgttt agtcaattgc gaatatacat tagataaatc
     4621 gaaagttatt tttaatttta cggcggatga tcgtattgat tttagaaaat tagtaaaaat
     4681 attagcgcaa catttaaaaa cacgtatcga gttgagacaa attggtgtaa gggatgaagc
     4741 caaattgctt ggcggtatcg gaccttgtgg taggtcgtta tgttgttcta catttttagg
     4801 ggattttgaa ccagtatcga ttaagatggc taaggatcaa aatttatcat taaatccaac
     4861 taaaatttct ggtgcatgtg gtcgtttgat gtgttgttta aaatatgaaa atgactatta
     4921 tgaggaagta cgtgcacaat tacctgatat tggtgaagca attgaaacgc ctgatggtaa
     4981 cgggaaagta gttgctttaa atatattaga catttctatg caggtgaagc ttgagggaca
     5041 tgaacagcca cttgaatata aattagaaga aatagaaact atgcattaag gaggcattat
     5101 tacatttgga tcgcaatgaa atatttgaaa aaataatgcg tttagaaatg aatgtcaatc
     5161 aactttcaaa ggaaacttca gaattaaagg cacttgcagt tgaattagta gaagaaaatg
     5221 tagcgcttca acttgaaaat gataatttga aaaaggtgtt gggcaatgat gaaccaacta
     5281 ctattgatac tgcgaattca aaaccagcaa aagctgtgaa aaagccatta ccaagtaaag
     5341 ataatttggc tatattgtat ggagaaggat ttcatatttg taaaggcgaa ttatttggaa
     5401 aacatcgaca tggtgaagat tgtctgttct gtttagaagt tttaagtgat taatcaagca
     5461 cactcaaata gtgttataat tataaatgaa tatggtttgg ataagtctga gacaatgcat
     5521 gtttcaggct ttaattgtgt ataaagtttt ggtgattgca taagagatgg cggtactaaa
     5581 tgttattatt aagtgtgcac gcagtatcat tagttataaa atgtagctgt taaaagtcaa
     5641 aaatacatcg aatgtagtta ggcatataat ataaaaagag ttttcaatta ctcaatagaa
     5701 aaaggttgtc ttcataggag ttaaaaatgt taaaagagaa tgaacgattt gatcaactaa
     5761 tcaaagaaga ttttagtatt attcaaaatg atgatgtttt ttcattttca acggatgctt
     5821 tgttgttagg gcattttaca aaacctagaa caaaagatat tgtgttggac ttatgttcag
     5881 gcaatggggt gatacccttg ttattgtttg cgaaacatcc acgacatata gaaggtgttg
     5941 agattcaaaa aacacttgtc gatatggcgc gacgcacatt tcaattcaat gatgttgatg
     6001 aatatttaac aatgcatcac atggatttga aaaacgttac taaagtattt aaaccttcac
     6061 aatatacttt agtaacgtgt aatccgcctt attttaaaga gaatcagcaa caccaacatc
     6121 aaaaagaagc acataagata gcgagacatg agattatgtg tacacttgaa gattgcatga
     6181 ttgcagcccg tcatttatta aaagaaggtg gcaggctaaa catggtacat cgtgcagaga
     6241 gactaatgga tgtcttgttt gaaatgagaa aagtgaatat tgaacctaag aaagtcgttt
     6301 ttatatatag taaagtaggg aaatcagcac aaacgatagt agtagaaggt cgaaaaggtg
     6361 gaaatcaagg tttagaaatc atgcccccat tttatattta taatgaagat ggtaattata
     6421 gcgaagaaat gaaggaagta tattatggat agtcattttg tatatattgt aaaatgtagt
     6481 gatggaagtt tatatacagg atacgctaaa gacgttaatg cacgtgttga aaaacataac
     6541 cgaggtcaag gagccaaata tacgaaagta agacgtccgg tgcatttagt ttatcaagaa
     6601 atgtatgaga caaagtctga agcattgaag cgtgaatatg aaattaaaac ttataccaga
     6661 caaaagaaat tgcgattaat taaggagcga tagtatggct gtattatatt tagtgggcac
     6721 accaattggt aatttagcag atattactta tagagcagtt gatgtattga aacgtgttga
     6781 tatgattgct tgtgaagaca ctagagtaac tagtaaactg tgtaatcatt atgatattcc
     6841 aactccatta aagtcatatc acgaacataa caaggataag cagactgctt ttatcattga
     6901 acagttagaa ttaggtcttg acgttgcgct cgtatctgat gctggattgc ccttaattag
     6961 tgatcctgga tacgaattag tagtggcagc cagagaagct aatattaaag tagagaccgt
     7021 gcctggacct aatgctgggc tgacggcttt gatggctagt ggattacctt catatgtata
     7081 tacattttta ggatttttgc cacgaaaaga gaaagaaaaa agtgctgtat tagagcaacg
     7141 tatgcatgaa aatagcacat taattatata cgaatcaccg catcgtgtga cagatacatt
     7201 aaaaacaatt gcaaagatag atgcaacacg acaagtatca ctagggcgtg aattaactaa
     7261 gaagttcgaa caaattgtaa ctgatgatgt aacacaatta caagcattga ttcagcaagg
     7321 cgatgtacca ttgaaaggcg aattcgttat cttaattgaa ggtgctaaag cgaacaatga
     7381 gatatcgtgg tttgatgatt tatctatcaa tgagcatgtt gatcattata ttcaaacttc
     7441 acagatgaaa ccaaaacaag ctattaaaaa agttgctgaa gaacgacaac ttaaaacgaa
     7501 tgaagtatat aatatttatc atcaaataag ttaatcactt tatcgattat atgaaatttt
     7561 aaacgatttt ataaacgcaa gctgtaattt taaatggtaa gttatcattt tgcattgata
     7621 ctgataaaat gatgttgact atgataaaaa aatgatgaca tcgacgtttt ttaatgtaaa
     7681 ataaatacat tgaaagtaat aaatacctta acattgaata agatgaaaat gagatgacga
     7741 gataaatgtt cgcgtccgtt gaaatgcata gaaatcttag atattatttg aagtgagaca
     7801 ttacgaggag gaacagttat ggctaaagaa acattttata taacaacccc aatatactat
     7861 cctagtggga atttacatat aggacatgca tattctacag tggctggaga tgttattgca
     7921 agatataaga gaatgcaagg atatgatgtt cgctatttga ctggaacgga tgaacacggt
     7981 caaaaaattc aagaaaaagc tcaaaaatct ggtaagacag aaattgaata tttggatgag
     8041 atgattgctg gaattaaaca attgtgggct aagcttgaaa tttcaaatga tgattttatc
     8101 agaacaactg aagaacgtca taaacatgtc gttgagcaag tgtttgaacg tttattaaag
     8161 caaggtgata tctatttagg tgaatatgaa ggttggtatt ctgttccgga tgaaacatac
     8221 tatacagagt cacaattagt agacccacaa tacgaaaacg gtaaaattat tggtggcaaa
     8281 agtccagatt ctggacacga agttgaacta gttaaagaag aaagttattt ctttaatatt
     8341 agtaaatata cagaccgttt attagagttc tatgaccaaa atccagattt tatacaacca
     8401 ccatcaagaa aaaatgaaat gattaacaac ttcattaaac caggacttgc tgatttagct
     8461 gtttctcgta catcatttaa ctggggtgtc catgttccgt ctaatccaaa acatgttgtt
     8521 tatgtttgga ttgatgcgtt agttaactat atttcagcat taggctattt atcagatgat
     8581 gagtcactat ttaacaaata ctggccagca gatattcatt taatggctaa ggaaattgtg
     8641 cgattccact caattatttg gcctatttta ttgatggcat tagacttacc gttacctaaa
     8701 aaagtctttg cacatggttg gattttgatg aaagatggaa aaatgagtaa atctaaaggt
     8761 aatgtcgtag accctaatat tttaattgat cgctatggtt tagatgctac acgttattat
     8821 ctaatgcgtg aattaccatt tggttcagat ggcgtattta cacctgaagc atttgttgag
     8881 cgtacaaatt tcgatctagc aaatgactta ggtaacttag taaaccgtac gatttctatg
     8941 gttaataagt actttgatgg cgaattacca gcgtatcaag gtccacttca tgaattagat
     9001 gaagaaatgg aagctatggc tttagaaaca gtgaaaagct acactgaaag catggaaagt
     9061 ttgcaatttt ctgtggcatt atctacggta tggaagttta ttagtagaac gaataagtat
     9121 attgacgaaa caacgccttg ggtattagct aaggacgata gccaaaaaga tatgttaggc
     9181 aatgtaatgg ctcacttagt tgaaaatatt cgttatgcag ctgtattatt acgtccattc
     9241 ttaacacatg cgccgaaaga gatttttgaa caattgaaca ttaacaatcc tcaatttatg
     9301 gaatttagta gtttagagca atatggtgtg cttaatgagt caattatggt tactgggcaa
     9361 cctaaaccta ttttcccaag attggatagc gaagcggaaa ttgcatatat caaagaatca
     9421 atgcaaccgc ctgctactaa agaggaaaaa gaagagattc ctagcaaacc tcaaattgat
     9481 attaaagact ttgataaagt tgaaattaag gcagcaacga ttattgatgc tgaacatgtt
     9541 aagaagtcag ataagctttt aaaaattcaa gtagacttag attctgaaca aagacaaatt
     9601 gtatcaggaa ttgccaaatt ctatacacca gatgatatta ttggtaaaaa agtagcagtt
     9661 gttactaacc tgaaaccagc taaattaatg ggacaaaaat ctgaaggtat gatattatct
     9721 gctgaaaaag atggtgtatt aaccttagta agtttaccaa gtgcaattcc aaatggtgca
     9781 gtgattaaat aactgtattt ttaaaaatta ggagagataa ttatgttaat cgatacacat
     9841 gtccatttaa atgatgagca atacgatgat gatttgagtg aagtgattac acgtgctaga
     9901 gaagcaggtg ttgatcgtat gtttgtagtt ggttttaaca aatcgacaat tgaacgcgcg
     9961 atgaaattaa tcgatgagta tgatttttta tatggcatta tcggttggca tccagttgac
    10021 gcaattgatt ttacagaaga acacttggaa tggattgaat ctttagctca gcatccaaaa
    10081 gtgattggta ttggtgaaat gggattagat tatcactggg ataaatctcc tgcagatgtt
    10141 caaaaggaag tttttagaaa gcaaattgct ttagctaagc gtttgaagtt accaattatc
    10201 attcataacc gtgaagcaac tcaagactgt atcgatatct tattggagga gcatgctgaa
    10261 gaggtaggcg ggattatgca tagctttagt ggttctccag aaattgcaga tattgtaact
    10321 aataagctga atttttatat ttcattaggt ggacctgtga catttaaaaa tgctaaacag
    10381 cctaaagaag ttgctaagca tgtgtcaatg gagcgtttgc tagttgaaac cgatgcaccg
    10441 tatctttcgc cacatccgta tagagggaag cgaaatgaac cggcgagagt aactttagta
    10501 gctgaacaaa ttgctgaatt aaaaggctta tcttatgaag aagtgtgcga acaaacaact
    10561 aaaaatgcag agaaattgtt taatttaaat tcataaagtt aaaagtgaga aagatcaccg
    10621 ccataaatgt aaacgatgct atattcgttt aatatgctat ggttctttct cactttttta
    10681 aattaaaata tcgtgcatgt ggaatacgtg cgatagagat ggttagagct ttgaaattaa
    10741 gaattgtagg aaggcgtttt aaatgaaaat caatgagttt atagttgtag aaggacgaga
    10801 tgatactgag cgtgttaaac gagctgttga atgtgatacg attgaaacga atggtagtgc
    10861 catcaacgaa caaactttag aagtaattag aaatgctcaa caaagtcgag gcgttattgt
    10921 attaacagat ccagatttcc caggagataa aattagaagt acaattactg aacatgtcaa
    10981 aggtgttaaa catgcgtata ttgatagaga aaaagctaaa aataaaaaag ggaaaattgg
    11041 tgttgaacat gccgaattaa ttgatattaa agaagcgtta atgcatgtta gttcaccctt
    11101 tgatgaagct tatgaatcaa ttgataaatc tgtgctaata gagttggggt taattgttgg
    11161 gaaagatgca aggcgccgta gagaaatttt aagtagaaaa ttgcgaatcg gccattccaa
    11221 tggtaagcag ttattgaaaa agttaaatgc atttggttat accgaagcgg atgtaaggca
    11281 agctttagaa gatgaatgag gaagtgaaaa tgttggataa taaagatatt gcaacaccat
    11341 caagaacgcg agcgttgtta gataaatatg gctttaattt taaaaaaagt ttaggacaga
    11401 actttttgat agatgtgaat atcattaata atatcattga tgcaagtgat attgatgcac
    11461 aaactggggt gattgaaatt ggtccaggca tggggtcatt gacagaacaa ttggccagac
    11521 atgctaaaag agtattggca tttgaaattg atcaacgttt aatacctgta ttaaatgata
    11581 cactatcacc ttatgataat gtgacggtga ttaatgaaga tattttaaaa gcgaatatta
    11641 aagaagctgt tgaaaatcat ttacaagatt gtgaaaaaat aatggttgtt gcaaacctgc
    11701 cgtactatat tacgacgcca attttattaa atttgatgca acaagatata ccaattgatg
    11761 gctacgtggt gatgatgcaa aaagaagtgg gcgaacgctt aaatgctgaa gtaggttcaa
    11821 aagcatatgg ttcgttatca attgtcgtac aatactatac agagactagt aaagtattaa
    11881 cggtacctaa atctgtattt atgccaccac ctaatgttga ttcaatagtt gtaaaactga
    11941 tgcagagaac tgaaccgtta gtaacagtag ataacgagga agcattcttt aagttagcaa
    12001 aagcagcatt tgcacaaaga agaaagacaa ttaacaataa ctatcaaaat tattttaaag
    12061 atggtaaaca acacaaagaa gtgattttac aatggttgga acaagcaggt attgatccaa
    12121 gacgtcgcgg tgaaacgcta tctattcaag attttgctaa attgtatgaa gaaaagaaaa
    12181 aattccctca attagaaaat taaatgattg acaaagcaaa gcactattgt taaaatttaa
    12241 attttgtttg acgaaaacgt tgcaaatatg gtattatgta acttgtagcg aggtggagca
    12301 atatgccaaa atcaattttg gacatcaaaa attctattga ttgtcatgta ggaaatcgta
    12361 ttgtactgaa agccaatgga ggccgtaaga aaacaataaa acgttctgga attttaaaag
    12421 aaacatatcc gtcagttttc attgttgagt tagatcaaga caaacacaac tttgagagag
    12481 tatcttatac atacactgat gtgttaactg aaaatgttca agtttcattt gaagaggata
    12541 atcatcacga atcaattgca cactaaataa gacatataga gatgttagac gtttcttagt
    12601 ataagaagta aatattatga taattatttg agtgttgggc attatgttca atactctttt
    12661 tatttacaaa atgtttaaca ctgatgtttc gcttatagat ttttcagtaa atggataatt
    12721 gtatttataa acacaaatac aagtaaatac taagtaatta gatggagaaa attacttttt
    12781 tattaaaaaa acactaaaaa acaaattaaa atgtcaaata ttaattctct ttatgttaaa
    12841 atcatcatat taagataacg aaaagagggc ggaaaatgat atatgaaacg gcaccagcca
    12901 aaattaattt tacgctcgat acacttttta aaagaaatga tggctatcat gagattgaaa
    12961 tgataatgac aacagttgat ttaaatgatc gtttaacttt tcataaaaga aaagatcgaa
    13021 agatagttgt tgagattgaa cataattatg tgccttctaa tcataaaaat ctcgcatatc
    13081 gtgcagcgca actatttatt gagcaatatc aactaaagca aggtgtaaca atttctatcg
    13141 ataaagaaat acctgtttct gctggcttag ctggaggttc ggctgatgca gcagcaacgt
    13201 taagaggatt gaatcgactt tttgatatag gggcgagttt ggaagaattg gctctactag
    13261 gcagtaaaat cgggacagat attccgtttt gtatttataa taaaactgca ctatgtactg
    13321 gaagaggaga gaaaatcgag tttttaaata aaccaccttc agcttgggtg attcttgcta
    13381 aaccaaactt aggcatatca tcaccagata tatttaagtt gattaattta gataagcgtt
    13441 acgacgtaca tacgaaaatg tgttatgagg ccttagaaaa tcgagattat caacaattat
    13501 gtcaaagttt gtctaatcga ttagagccaa tttctgtttc aaaacaccca caaatcgata
    13561 aattaaaaaa taatatgttg aaaagtggtg cagatggtgc gttaatgagt ggaagcggac
    13621 ctactgtgta tgggctagca cgaaaagaaa gccaagcaaa aaatatttat aatgcagtta
    13681 acggttgttg taatgaagtg tacttagtta gactattagg atagaagggt tgaaaagatg
    13741 agatataaac gaagcgagag aattgttttt atgacgcaat atttgatgaa ccatccgaat
    13801 aaattgattc cattaacttt ttttgtgaaa aaatttaaac aggcgaagtc ttcaataagt
    13861 gaagatgtcc aaattataaa aaatacattc caaaaagaaa agttaggtac agtaattact
    13921 actgctggcg caagtggtgg tgttacgtat aaaccaatga tgagtaaaga agaggcgact
    13981 gaagttgtta atgaggtcat tactctatta gaagagaaag aacgtttgtt acctggcgga
    14041 tatttatttt tatcagattt ggtaggtaat ccatcgctac taaacaaagt tggtaagtta
    14101 attgccagta tttacatgga agaaaaatta gatgctgttg ttaccattgc gacaaaaggt
    14161 atttcattgg caaatgcggt tgctaatatt ttaaatttac cagtagtagt gattagaaaa
    14221 gacaacaagg tgactgaagg ttctacagtt tcaattaatt acgtttcagg atcttcaaga
    14281 aaaatagaaa caatggtact ttcgaagaga actttagcag aaaattcaaa tgttttagtt
    14341 gtcgatgatt ttatgagggc tggtggctct attaatggtg ttatgaattt aatgaatgag
    14401 tttaaagccc atgtaaaagg ggtatcagta cttgtagaat caaaagaagt taaacaaaga
    14461 ttgattgaag attatacttc cttagtgaaa ttatctgatg tagatgaata taatcaagag
    14521 tttaacgtag aacctggcaa cagtttatct aagttttcat aaaaggagtt ttagtattat
    14581 gaaaatcatt aacacaacaa gattaccgga agcacttgga ccatattcgc atgcaacagt
    14641 tgtgaatggt atggtttata cttctggtca gattccattg aatattgatg gacatatcgt
    14701 aagcgctgat gttcaagcac agacaaaaca agttttagaa aatttaaagg ttgttttgga
    14761 agaagcagga tctgatttga attctgttgc gaaagcgacc attttcatta aagatatgaa
    14821 tgatttccaa aaaataaatg aagtgtatgg tcaatatttt aatgaacaca agccagcgcg
    14881 tagttgtgta gaggttgcgc gtttgccaaa agatgtgaaa gtagaaattg aattagtaag
    14941 taaaattaag gaattataat tttcgattaa tatgtttaat caagcttcta aataaaacag
    15001 agagatatat actatagggg ggctcactac atgaaagtga cagatgtaag acttagaaaa
    15061 atacaaacag atggacgaat gaaagcactc gtttccatta cattagatga agctttcgta
    15121 attcatgatt tacgtgtaat tgaaggaaac tctggcttgt tcgttgcaat gccaagtaaa
    15181 cgtacaccag atggtgaatt ccgcgacatc gcgcatccta ttaattcaga tatgagacaa
    15241 gaaattcaag atgcagtgat gaaagtatat gatgaaacag atgaagtagt accagataaa
    15301 aacgctacat cagaagattc agaagaagct taatcaattt tatatttagc gatgtaatac
    15361 atttgcaata agttgatttg atactgtcga taaagcataa agctttgtcg gcagtttttt
    15421 tagtttgtat taatgttttt ttatttttaa tgaaaggcta ataaatatat acgttaacag
    15481 attatgatga tatgaaaatt attgattcat tgctgataaa aattgcgttt gaatgatgct
    15541 cgtatttttg aagtaagaaa aaagttgttt ttaaaattac aacgaattaa aaacaatgcc
    15601 ttttatatgt tgaaagagta ttgcagatta aattataata atgacgaagt gtaaaattta
    15661 atgggggtta atgttcatgc gaagacacgc gataattttg gcagcaggta aaggcacaag
    15721 aatgaaatct aaaaagtata aagtgctaca cgaggttgct gggaaaccta tggtcgaaca
    15781 tgtattggaa agtgtgaaag gctctggtgt cgatcaagtt gtaaccatcg taggacatgg
    15841 tgctgaaagt gtaaaaggac atttaggcga gcgttcttta tacagttttc aagaggaaca
    15901 actcggtact gcgcatgcag tgcaaatggc gaaatcacac ttagaagaca aggaaggtac
    15961 gacaatcgtt gtatgtggtg acacaccgct catcacaaag gaaacattag aaacattgat
    16021 tgcgcatcac gaggatgcta atgctcaagc aactgtatta tctgcatcga ttcaacaacc
    16081 atatggatac ggaagaatcg ttcgaaatgc gtcaggtcgt ttagaacgca tagttgaaga
    16141 gaaagatgca acgcaagctg aaaaggatat taatgaaatt agttcaggta tttttgcgtt
    16201 taataataaa acgttgtttg aaaaattaac acaagtgaaa aatgataatg cgcaaggtga
    16261 atattacctc cctgatgtat tgtcgttaat tttaaatgat ggcggcatcg tagaagtcta
    16321 tcgtaccaat gatgttgaag aaatcatggg tgtaaatgat cgtgtaatgc ttagtcaggc
    16381 tgagaaggcg atgcaacgtc gtacgaatca ttatcacatg ctaaatggtg tgacaatcat
    16441 cgatcctgac agcacttata ttggtccaga cgttacaatt ggtagtgata cagtcattga
    16501 accaggcgta cgaattaatg gtcgtacaga aattggcgaa gatgttgtta ttggtcagta
    16561 ctctgaaatt aacaatagta cgattgaaaa tggtgcatgt attcaacagt ctgttgttaa
    16621 tgatgctagc gtaggagcga atactaaggt cggaccgttt gcgcaattga gaccaggcgc
    16681 gcaattaggt gcagatgtta aggttggaaa ttttgtagaa attaaaaaag cagatcttaa
    16741 agatggtgcc aaggtttcac atttaagtta tattggcgat gctgtaattg gcgaacgtac
    16801 taatattggt tgcggaacga ttacagttaa ctatgatggt gaaaataaat ttaaaactat
    16861 cgtcggcaaa gattcatttg taggttgcaa tgttaattta gtagcacctg taacaattgg
    16921 tgatgatgta ttggtggcag ctggttccac aatcacagat gacgtaccaa atgacagttt
    16981 agctgtggca agagcaagac aaacaacaaa agaaggatat aggaaataat catttacgta
    17041 tttaaaatgg ctaggataaa aggataatcc tatgtaatat taatgtaatc tttatgattt
    17101 aatgattcgc atagtaatgg agttacattt tatatataat agtaattgcg taagtaaata
    17161 attggaggac tataaatgtt aaataatgaa tataagaatt cgtcattaaa gattttttca
    17221 ttgaaaggaa acgaagcatt agcgcaagaa gttgctgacc aagtaggaat tgaactaggt
    17281 aaatgttcag ttaaacgttt tagtgatgga gaaattcaaa ttaatatcga agagagtatt
    17341 cgtggttgtg acgtatttat tattcaacca acatcatatc ctgtgaatct acatttaatg
    17401 gaattattaa ttatgattga tgcttgtaaa cgtgcttctg cagcaacaat caatattgta
    17461 gtgccatatt atggatatgc aagacaagat agaaaagccc gtagccgtga gccaatcact
    17521 gctaaattag ttgcaaactt aatcgaaaca gctggcgcaa ctcgtatgat tgcgttagac
    17581 ttacatgcac cacaaattca aggattcttt gatattccaa ttgaccactt aatgggtgtg
    17641 ccaattcttg ctaaacattt caaagatgat ccgaatatta acccagaaga atgtgtcgtt
    17701 gtttcaccag accatggcgg cgttacacgt gcacgtaaat tagctgacat tttaaaaact
    17761 ccaattgcaa ttatagataa acgtcgtcct agaccaaatg ttgctgaagt gatgaacatt
    17821 gttggtgaga ttgaaggacg tacggcaatt attattgacg atattattga tacagcaggt
    17881 acaatcactt tagctgcaca agcattaaaa gataaaggtg ctaaagaagt atatgcttgt
    17941 tgtacacacc ctgttttatc aggaccggct aaagaacgta tcgaaaattc tgctataaaa
    18001 gaattaatcg taacaaactc aattcattta gatgaagatc gcaaaccatc taacactaaa
    18061 gaattatctg ttgctggttt aatcgcacaa gctatcattc gtgtatacga aagagaatca
    18121 gttagcgtat tatttgacta atatttaaaa ggcgtttgac gaacatattc caaacgtgta
    18181 taatagtttc gttcgtgatt atacgaataa ataaacactt gcaagcaacg atgatgttga
    18241 tgggtaagtg aggtgctcgt tttgagcaaa aatgaaaggt ggaaatgaga atggcttcat
    18301 taaagtcaat catccgtcaa ggtaaacaaa cacgttcaga tcttaaacaa ttaagaaaat
    18361 ctggtaaagt accagcagta gtatacggtt acggtactaa aaacgtgtca gttaaagttg
    18421 atgaagtaga attcatcaaa gttatccgtg aagtaggtcg taacggtgtt atcgaattag
    18481 gcgttggttc taaaactatc aaagttatgg ttgcagacta ccaattcgat ccacttaaaa
    18541 accaaattac tcacattgac ttcttagcaa tcaatatgag tgaagaacgt actgttgaag
    18601 taccagttca attagttggt gaagcagtag gcgctaaaga aggcggcgta gttgaacaac
    18661 cattattcaa cttagaagta actgctactc cagacaatat tccagaagca atcgaagtag
    18721 acattactga attaaacatt aacgacagct taactgttgc tgatgttaaa gtaactggcg
    18781 acttcaaaat cgaaaacgat tcagctgaat cagtagtaac agtagttgct ccaactgaag
    18841 aaccaactga agaagaaatc gaagctatgg aaggcgaaca acaaactgaa gaaccagaag
    18901 ttgttggcga aagcaaagaa gacgaagaaa aaactgaaga gtaattttaa tctgttacat
    18961 taaagttttt atactttgtt taacaagcac tgtgcttatt ttaatataag catggtgctt
    19021 tttgtgttat tataaagctt aattaaactt tattactttg tactaaagtt taattaattt
    19081 tagtgagtaa aagacattaa actcaacaat gatacatcat aaaaatttta atgtactcga
    19141 ttttaaaata catacttact aagctaaaga ataatgataa ttgatggcaa tggcggaaaa
    19201 tggatgttgt cattataata ataaatgaaa caattatgtt ggaggtaaac acgcatgaaa
    19261 tgtattgtag gtctaggtaa tataggtaaa cgttttgaac ttacaagaca taatatcggc
    19321 tttgaagtcg ttgattatat tttagagaaa aataattttt cattagataa acaaaagttt
    19381 aaaggtgcat atacaattga acgaatgaac ggcgataaag tgttatttat cgaaccaatg
    19441 acaatgatga atttgtcagg tgaagcagtt gcaccgatta tggattatta caatgttaat
    19501 ccagaagatt taattgtctt atatgatgat ttagatttag aacaaggaca agttcgctta
    19561 agacaaaaag gaagtgcggg cggtcacaat ggtatgaaat caattattaa aatgcttggt
    19621 acagaccaat ttaaacgtat tcgtattggt gtgggaagac caacgaatgg tatgacggta
    19681 cctgattatg ttttacaacg cttttcaaat gatgaaatgg taacgatgga aaaagttatc
    19741 gaacacgcag cacgcgcaat tgaaaagttt gttgaaacat cacgatttga ccatgttatg
    19801 aatgaattta atggtgaagt gaaataatga caatattgac aacgcttata aaagaagata
    19861 atcattttca agaccttaat caggtatttg gacaagcaaa cacactagta actggtcttt
    19921 ccccgtcagc taaagtgacg atgattgctg aaaaatatgc acaaagtaat caacagttat
    19981 tattaattac caataattta taccaagcag ataaattaga aacagattta cttcaattta
    20041 tagatgctga agaattgtat aagtatcctg tgcaagatat tatgaccgaa gagttttcaa
    20101 cacaaagccc tcaactgatg agtgaacgta ttagaacttt aactgcgtta gctcaaggta
    20161 agaaagggtt atttatcgtt cctttaaatg gtttgaaaaa gtggttaact cctgttgaaa
    20221 tgtggcaaaa tcaccaaatg acattgcgtg ttggtgagga tatcgatgtg gaccaatttc
    20281 ttaacaaatt agttaatatg gggtacaaac gggaatccgt ggtatcgcat attggtgaat
    20341 tctcattgcg aggaggtatt atcgatatct ttccgctaat tggggaacca atcagaattg
    20401 agctatttga taccgaaatt gattctattc gggattttga tgttgaaacg cagcgttcca
    20461 aagataatgt tgaagaagtc gatatcacaa ctgcaagtga ttatatcatt actgaagaag
    20521 tgatcagcca tcttaaagaa gagttaaaaa ctgcatatga aaatacaaga cccaaaatag
    20581 ataaatcagt gcgcaatgat ttgaaagaaa cgtatgaaag ctttaaatta ttcgaaagta
    20641 catactttga tcatcaaata ctacgtcgct tagtagcgtt tatgtatgaa acaccttcga
    20701 caattattga gtatttccaa aaagatgcaa tcattgcagt tgatgaattt aatcgtatta
    20761 aagaaactga agaaagttta acagtagagt ctgattcgtt tattagcaat attattgaaa
    20821 gtggtaatgg atttatagga caaagtttta taaaatatga tgattttgaa acattgattg
    20881 aaggctatcc tgtcacttat ttttcattat tcgctacaac aatgccgata aaactaaatc
    20941 atattattaa attttcatgt aaacctgtcc aacaatttta tgggcaatat gacattatgc
    21001 gttctgaatt tcaacgatat gttaatcaaa actatcatat cgtggttttg gtcgaaaccg
    21061 aaactaaagt tgaacgtatg caagcgatgt taagtgaaat gcatattcca tcaataacaa
    21121 aattgcatcg ctcaatgtca tcggggcaag cagtgattat tgaaggcagt ttatctgaag
    21181 gatttgaact acctgatatg ggattagttg tcattactga gcgtgagctt tttaaatcaa
    21241 aacagaaaaa gcaacgaaaa cgtacgaaag ctatctcaaa tgctgaaaaa attaagtctt
    21301 accaagattt aaatgtggga gattatattg ttcatgtgca tcatggtgtt ggtagatatt
    21361 taggtgttga gacgctcgaa gtggggcaaa cgcatcgtga ttatattaaa ttgcaatata
    21421 aaggtacgga tcaactattt gttccagtag atcaaatgga tcaagttcaa aaatatgtag
    21481 cttcggaaga taagacgcca aaattaaata aactcggtgg cagtgaatgg aaaaaaacaa
    21541 aagctaaagt tcaacaaagt gttgaagata ttgctgaaga gttgattgat ttatataaag
    21601 aaagagaaat ggcagaaggt tatcaatatg gggaagacac agctgagcaa acaacatttg
    21661 aattagattt tccatatgaa cttacgcctg accaagctaa atctatcgat gaaattaaag
    21721 atgacatgca aaaatcgcgt ccaatggatc gcttgctatg tggtgatgtt ggttatggta
    21781 aaactgaagt tgcagtgaga gcagcattca aagctgtaat ggaaggaaag caggttgcat
    21841 ttttagttcc tacaactatt ttagctcagc aacattatga gacgttaatt gagcgtatgc
    21901 aagattttcc tgttgaaatt caattaatga gtcgttttag aacgcctaaa gagataaaac
    21961 aaactaagga aggacttaaa actggatttg ttgacatagt tgttggtaca cacaaattac
    22021 ttagtaaaga tatacagtat aaagatttag ggctgttgat tgtagatgaa gaacaacgat
    22081 ttggtgtacg ccataaagag cgtattaaaa cattaaaaca taatgtagat gtactaacat
    22141 tgactgcaac cccaatacct agaacattgc atatgagtat gctaggtgtg cgggatttgt
    22201 cagtgattga aacgccgcca gaaaatcgtt tcccagttca aacatatgta ttagaacaga
    22261 acatgagttt tatcaaagaa gctttagaaa gagaactatc ccgtgatggc caagtgtttt
    22321 atctttataa taaagtgcaa tccatttatg aaaaacgaga acaactccag atgttaatgc
    22381 cagatgctaa cattgcagtt gctcatggac aaatgacaga gcgcgattta gaagaaacga
    22441 tgttaagttt tatcaataat gaatatgata ttttagtaac gacgacgatt attgaaacag
    22501 gtgtcgatgt cccaaatgca aatactttga tcattgaaga tgcagatcgc tttggattga
    22561 gtcagttgta tcaattaaga ggtcgtgttg gtcgttcaag tcgtattggt tatgcatact
    22621 tcttacatcc agcaaataag gtactaactg agactgcaga agatcgatta caagcgatta
    22681 aagaatttac ggagttaggc tcaggattta agattgcgat gcgtgatttg aacattcgtg
    22741 gtgctggtaa tttgttaggt aaacaacagc acggctttat tgatacagtt ggatttgatt
    22801 tgtacagtca aatgttagaa gaagctgtaa atgaaaaacg tggtattaag gaaccagaat
    22861 ctgaggtgcc agaagtcgaa gttgatttaa acttggatgc atatttgcca acagaatata
    22921 ttgcaaatga acaagctaaa attgaaattt ataaaaagct acgaaaaact gaaacatttg
    22981 atcaaattat cgacattaaa gatgaattaa ttgatcgttt caatgattat cctgttgaag
    23041 tagcacgttt gcttgatata gtggaaataa aagtacacgc attacattca ggtatcacgt
    23101 tgattaaaga taaagggaaa ataattgata ttcatttatc tgtaaaagcc actgaaaata
    23161 ttgatggcga agtgctgttc aaagcaacac aacctttagg tagaacaatg aaggttggtg
    23221 ttcaaaataa tgcaatgaca attactttaa cgaaacaaaa tcaatggctt gatagtttga
    23281 agtttttagt taagtgcatt gaagaaagta tgagaatcag tgatgaagca taaagaagca
    23341 tttaatggcg ttgtcgtgtt aactgctgca ttaattgtca ttaaaattct gagtgctgta
    23401 tatcgaattc catatcaaaa tatattaggc gatacaggtt tgtatgcata tcaacaagtg
    23461 tatccaattg tagcattagg aatgatatta tcgatgaatg ccattcctag tgcaattaca
    23521 caaaatatag ggaagtatca tagtgacgaa gcatatgcaa aagcagtcgc ttatatacaa
    23581 ttagttggta tattattatt tattgctatt tttgtgtttg cgaacaatat tgcacatatg
    23641 atgggtgatg gccatttaac accaatgatt caagctgcaa gtttaagctt tatatttata
    23701 ggtatgcttg gcgtgttaag aggttattat caatctgcaa ataatatgac agttccggct
    23761 atttcccagg ttatagaaca agttatacga gtaggtatta tcattgttac tattgttatt
    23821 tttgtagaca gaggttggac gatatatgaa gcgggaacaa ttgctatttt agcatcaacg
    23881 ataggttttt taggttcttc aatttattta gtagcgcacc gaccttttaa gtttaaaatg
    23941 gtaaataaca ctgcaaagat cgtttggaaa cagttcgcac tttcggtttt gattttcgct
    24001 atcagtcaat taatcgtaat tttatggcaa gtgattgata gtgttactat tattaagtca
    24061 cttcaagcga tacgcgtgcc attcgatgtt gccataactg aaaaaggagt ctatgaccgt
    24121 ggtgcatcat ttattcagat gggattgatt gtaactacaa catttagttt tgcgctcatt
    24181 cctctgttaa gtgacgcaat taaaatgaat aatcaggtac ttatgaatcg ttatgcaaat
    24241 gcgtcattaa agattacgat tttaataagt acagcagcag gaataggatt aattaattta
    24301 ttgcctttaa tgaacggtgt gttttttaag acgaatgatt taaccttaac gttaagtgtt
    24361 tatatgatta cggtcatttg tgtatcgtta attatgatgg atatggcatt attacaagcg
    24421 caacatgctg tgagacctat ttttgttggt atgacggcag gattggttat taaatttata
    24481 cttaatatca ttttgattcg tttaagtggc attattggtg cgagcattag tactgttgta
    24541 tcattaatta tattcggtac gattatccat attgctgtca cgagaaaata ccacttatat
    24601 gcgatgagac gattttttat caatgttgtt ttaggtatgg tatttatgtc gattgttgtt
    24661 caatgcgtgt taaacatagt gacaacacac ggtagaatca ctggactcat tgaattatta
    24721 tgtgcagcag tattaggtat cattgcattg tttttctata tttttagatt taatgttttg
    24781 acatataaag agttaactta tttaccattt ggttcaaagt tgtatcaaat taagaaagga
    24841 agacgttgat ggcacatacc attacgattg ttggcttagg aaactatggc attgatgatt
    24901 tgccgctagg gatatataaa tttttaaaga cacaagataa agtttatgca agaacgttag
    24961 atcatccagt tatagaatca ttgcaagatg aattaacatt tcagagtttt gaccatgttt
    25021 atgaagcaca taaccaattt gaagatgtct atattgatat tgtggcgcaa ttggttgaag
    25081 ctgctaatga aaaagatatt gtctatgcgg ttccgggtca tcctagagtt gctgagacaa
    25141 ctacagtgaa attactggct ttagcaaagg acaatactga tatagatgtg aaagttttag
    25201 gtgggaaaag ctttattgat gatgtgtttg aagcagttaa tgtagatcca aatgatggct
    25261 tcacactgtt agatgcgaca tcattacaag aagtaacact taatgttaga acgcatacat
    25321 tgattacgca agtttatagt gcaatggttg ctgctaattt gaaaatcact ttaatggaac
    25381 gatatcctga tgattaccct gttcaaattg tcactggtgc acgaagcgat ggtgcggata
    25441 acgttgtgac atgcccatta tatgaattgg atcatgatga aaatgcattc aataatttga
    25501 cgagtgtatt cgtaccaaaa atcataacat cgacatattt gtatcatgac tttgattttg
    25561 caacggaagt gattgatact ttagttgatg aagataaagg ttgtccatgg gataaagtgc
    25621 aaacgcatga aacgctaaag cgttatttac ttgaagaaac atttgaattg ttcgaagcta
    25681 ttgacaatga agatgattgg catatgattg aagaactagg agatatttta ttacaagtgt
    25741 tattgcatac tagtattggt aaaaaagaag ggtatatcga cattaaagaa gtgattacaa
    25801 gtcttaatgc taaaatgatt cgtagacacc cacacatatt tggtgatgcc aatgctgaaa
    25861 ctatcgatga cttaaaagaa atttggtcta aggcgaaaga tgctgaaggt aaacagccaa
    25921 gagttatatt tgaaaaagta tttgcagagc attttttaaa tttatatgag aagacgaagg
    25981 ataagtcatt tgatgaggcc gcgttaaagc agtggctaga aaaaggggag agtaatacat
    26041 gagattagat aaatatttaa aagtatcacg gttaataaag cgacgtacgc tagcaaaaga
    26101 agtaagtgat caaggtagaa ttacaataaa tggtaatgtt gctaaagctg gatcggatgt
    26161 taaagttgaa gatgtgctga cgattcgctt tggtcaaaaa ttagtaacag ttaaagtaac
    26221 tgcattaaat gaacatgcat ctaaagataa cgcgaagggt atgtatgaaa tcattgaaga
    26281 gcgtcgactt gaagaagcgt aaattggagg tgacaagcaa tgaaaaataa agtagaacat
    26341 atagaaaatc agtacacgtc gcaagagaac aagaaaaaac aacgtcaaaa aatgaaaatg
    26401 cgtgttgttc gtaggcgtat tacagtattt gcgggcgtat tacttgcgat aattgttgtt
    26461 ttatcaatct tgcttgttgt ccaaaaacat cgcaatgata ttgatgcaca ggagcgaaaa
    26521 gcgaaagaag cacagtttca aaagcaacaa aatgaagaaa ttgcgttaaa agaaaagttg
    26581 aataatctga atgacaaaga ttacattgaa aaaattgcgc gtgatgatta ttacttaagc
    26641 aacaaaggtg aagtgatttt taggttgcca gaagacaaag attcgtctag ctcaaaatct
    26701 tcgaaaaaat aaatccaaat tgattcaaaa ttatccgagt atagacattg tgaaaaaatc
    26761 caaacaagga tataataagg gaaaatcgaa tcaaatcggg aggatttatt taacatatgt
    26821 caatcgaagt tggaaataag cttaaaggta aagtcactgg tattaaaaag tttggtgcat
    26881 tcgtagaatt acctgaagga aaaagtggtt tagttcacat tagtgaagtc gcagataatt
    26941 atgttgaaaa cgtagaagag cacctttctg ttggtgatga agtagacgta aaagtattat
    27001 ctattgctga tgatggaaaa attagtcttt caattaagaa agctaaagac cgtccacgta
    27061 gacaacatac gagtaaacca agtcatcaaa aaccagtgca aaaagccgaa gattttgaaa
    27121 agaaattaag caatttctta aaagatagtg aagataaatt aacttcaatc aaacgtcaaa
    27181 cagaatctag acgcggtggc aaaggttcaa gacgttaatt aaaataaata aagactgctt
    27241 cgataaggaa tatatttaga atgatgcgta tcgaataatc gattgcagcg ttagacaatc
    27301 taagactgtt tcttaaataa ggagcagtct cttttatttg taatgatata actaagactt
    27361 ataccatttt tgaaaattgt aaaagtgagg tgatgttatg cagttaaata gtaatggttg
    27421 gcatgttgat gaccatattg ttgtcgctgt ttctacaggt attgatagta tgtgtttatt
    27481 gtatcaacta ctaaatgatt ataaagatag ttatagaaaa ctaacatgct tacatgtcaa
    27541 tcatggcgtt aggtcagctt caattgagga agccagattt ttagaagcat actgcgaacg
    27601 tcatcacatc gatttacata tcaaaaagtt agatttgtcg catagtctcg accgaaataa
    27661 cagcattcag aatgaagctc gaattaaacg ttacgaatgg tttgatgaaa tgatgaatgt
    27721 attagaagcg gatgtattgc taacggcgca tcatttggac gatcaattag aaactattat
    27781 gtatcgtatt tttaatggga aatcaacacg taataaacta ggatttgatg agttatcgaa
    27841 gcgaaaaggt tatcagattt atcgaccact tttagctgtc tctaaaaaag aaataaaaca
    27901 attccaagag agatatcata ttccatattt tgaagatgaa tctaataaag ataacaaata
    27961 tgttagaaat gatattcgta atagaattat tccagctatt gatgaaaata atcaacttaa
    28021 agtatcgcat ttattaaaat taaaacaatg gcatgatgaa caatatgata ttttgcaata
    28081 ttcagctaaa caatttattc aagaatttgt gaagtttgat gaacagtcaa aatatttaga
    28141 ggtttctaga caagctttta ataacttacc aaactcatta aagatggttg tgttggactg
    28201 cctattatca aagtattatg agttgtttaa tattagtgct aaaacatacg aagagtggtt
    28261 taaacaattt agtagtaaga aagcacaatt cagtattaat ctcacggata aatggataat
    28321 tcaaatcgca tatggtaaat taataataat ggctaaaaat aatggcgata catattttag
    28381 agttcaaaca attaaaaagc caggtaatta tatttttaac aaatatcgat tagagataca
    28441 ttctaattta ccaaaatgtt tatttccgct tacagtgaga acacgacaaa gtggcgatac
    28501 atttaaactg aatgggcgcg atggttataa gaaagtgaat cgcctgttta tagattgtaa
    28561 agtgccacag tgggttcggg atcaaatgcc aatcgtattg gataaacaac agcgcattat
    28621 tgcggtagga gatttatatc aacaacaaac aataaaaaaa tggattataa ttagtaaaaa
    28681 tggagatgaa tagcgttatg cataatgatt tgaaagaagt attgttaact gaagaagata
    28741 ttcaaaatat ctgtaaggaa ttgggagcac aattaacaaa ggattatcaa ggtaaaccat
    28801 tagtatgcgt gggtatctta aaaggctcag caatgtttat gtcagattta attaaacgaa
    28861 ttgataccca tttatcaatt gatttcatgg atgtttctag ttatcacgga ggcactgagt
    28921 caactggtga agttcaaatc attaaagatt taggttcttc tattgaaaat aaagacgtat
    28981 taattattga agatatctta gagactggta ctacacttaa gtcaattact gaattattac
    29041 aatctagaaa agttaattca ttagaaatag ttactttatt agataaacca aaccgtcgta
    29101 aagcggacat tgaagctaag tatgtaggta aaaaaatacc agatgaattt gttgttggtt
    29161 acggtttaga ttatcgtgaa ttataccgaa acttaccata tatcggtacg ttaaaacctg
    29221 aagtgtattc aaattaattt tttaatcaat ttcagttatt attactatgc gtttgagaaa
    29281 taatagtgta gactcaaaaa tatgaaaaat gtatttcata tatatttaat tttagacaag
    29341 acatatgtct tgaaaagttg aaaaatatag agattgataa aactaatacg ggtgtgaatg
    29401 acattgatgt taagctcaat tactagctta taaaacatgt catatgttac aatttttgtt
    29461 agttttatta tgggaagtag gaggaaatga cgcatgcaga aagcttttcg caatgtgcta
    29521 gttatcgtaa taataggcgt tattattttt ggtctatttt catatttaaa cggtaatgga
    29581 aatatgccga aacagcttac atataatcaa tttactgaga agttggaaaa aggtgacctt
    29641 aaaactttag aaatccaacc acaacaaaat gtctatatgg taagtggtaa aacgaaaaat
    29701 gatgaagact attcatcaac tattttatat aacaacgaaa aagaattaca aaaaattact
    29761 gatgctgcta aaaagcaaaa cggtgtaaaa ttaacgatta aagaagaaga aaaacaaagt
    29821 gtctttgtga gtatactttc aacattaatt ccagttgtag tcatagcgtt attatttatt
    29881 ttcttcctaa gccaagcaca aggtggcggt agtggcggtc gtatgatgaa ctttggtaaa
    29941 tctaaagcaa aaatgtacga taataataaa cgtcgtgttc gtttctctga tgtagcaggg
    30001 gcagatgaag aaaaacaaga attaattgaa attgttgatt tcttgaaaga taataaaaaa
    30061 ttcaaagaaa tgggatctag gattcctaaa ggtgtcttac ttgttggacc tccaggtact
    30121 ggtaaaacat tacttgctag agcggttgca ggtgaagctg gcgcaccatt cttctctatt
    30181 agtggttcag actttgtaga gatgtttgtt ggtgttggtg cgagccgtgt tcgtgactta
    30241 ttcgataatg ctaagaaaaa cgcgccttgt atcatcttta tcgatgagat tgatgctgtt
    30301 ggtcgtcaac gtggtgcagg tgttggtggc ggtcatgatg aacgtgaaca aaccctaaac
    30361 caattattag ttgaaatgga tggtttcggt gaaaatgaag gtatcattat gatagctgct
    30421 acaaaccgtc ctgatatcct tgacccagcc ttattacgtc caggtcgttt tgatagacaa
    30481 attcaagttg gtcgtccaga tgtgaaaggc cgtgaagcaa ttcttcatgt tcatgctaaa
    30541 aacaaaccac ttgatgaaac ggttgattta aaagcaattt cacaacgtac acctggtttc
    30601 tcaggtgctg atttagagaa cttattaaat gaagcatctt taattgctgt acgtgaaggt
    30661 aaaaagaaaa ttgacatgag agatatcgaa gaggcaacgg atagagttat agccggacct
    30721 gctaagaaat ctcgagttat ttctaagaaa gaacgtaata ttgttgctca tcacgaagct
    30781 ggtcatacaa ttatcggtat ggtacttgat gaggcagaag tagtgcataa agttactatt
    30841 gttccacgtg gacaagcagg tggttatgca atgatgctac ctaaacaaga tcgtttctta
    30901 atgactgaac aagagttatt agataaaatc tgtggtttac ttggtggacg tgtatcagaa
    30961 gatattaact ttaacgaagt atcaacaggt gcttcaaatg acttcgaacg tgcaacacaa
    31021 atcgcacgct caatggttac gcaatatggt atgagtaaaa aattaggacc attacagttc
    31081 ggtcatagca atggtcaagt attcttaggt aaagatatgc aaggtgagcc taattattca
    31141 agccaaatcg catatgaaat tgataaagaa gttcaacgaa tcgttaaaga acaatacgaa
    31201 cgttgtaaac aaattttatt agagcacaaa gaacaattaa ttttaattgc tgaaacatta
    31261 ttaacagaag aaacattagt tgctgaacaa attcaatcat tattctacga aggtaaatta
    31321 cctgaaattg attatgatgc agctaaagtt gttaaagatg aagattctga atttaatgat
    31381 ggtaaattcg gtaaatctta tgaagagatt cgtaaagagc aattagaaga tggacaacgt
    31441 gacgaaagtg aagatcgtaa agaagaaaaa gatattgctg aggataaaaa agaagctgat
    31501 aaatctgatg aaaaagatga accagcacat caacaagccc caaatatcga aaaaccttac
    31561 gatccaaatc acccagacaa taaataatcg attatattca gtacctcttt ctatgataaa
    31621 gttatagaaa gaggtacttt tatcgttttt gaaaatacgt attagatttt aagtcgttga
    31681 attgttatag cagaaaataa ttgtaaaaca agttacttca ttatttagaa tgatgggtgt
    31741 agaataagta caattgttgc attttatgaa gtaaagtaat tttttaaata tagagtaata
    31801 gaggagattg aaataatgac acacgattat attgttaaag cattagcatt tgatggagag
    31861 attagggctt atgctgcttt gacaactgaa actgttcaag aagcacaaac gagacattat
    31921 acatggccga cagcatctgc tgcaatggga agaacaatga cagcaacagc tatgatgggc
    31981 gcaatgttga aaggtgatca aaaattaact gtcactgtag atggccaagg acctattgga
    32041 cgaattattg ccgatgcaaa tgctaaaggc gaggtgcgtg cttatgtaga ccatccacaa
    32101 actcattttc cattaaatga gcaaggtaaa cttgatgtaa gacgagcggt agggacaaat
    32161 ggatctatta tggttgttaa agacgttgga atgaaagact atttctctgg agcaagtcca
    32221 attgtttcag gagaacttgg tgaagatttt acttattatt atgctacaag tgaacaaaca
    32281 ccttcatcgg taggtcttgg tgtattggta aatcctgata atacgattaa agcagcagga
    32341 ggatttatca ttcaagttat gccaggtgcc aaagatgaaa caatttcaaa attagaaaaa
    32401 gcaattagtg aaatgacacc agtttctaaa ttaattgaac aaggattaac gccagaagga
    32461 ttactaaacg aaatcttagg tgaagaccat gtgcaaattt tagagaaaat gcctgttcaa
    32521 tttgaatgta attgtagtca tgagaaattt ttaaatgcta ttaaaggatt gggcgaggct
    32581 gagattcaaa atatgattaa agaagatcat ggtgctgaag cagtatgtca tttctgtgga
    32641 aataaatata aatatactga agaagaatta aacgtgttgc tagaaagttt agcgtaattt
    32701 aatttaaatc aatacgctaa aatgtttatt tttagcggtt tagtgaaatg tagaactaaa
    32761 tagttgtata atccttagtg attttgtttg ctttctagaa tttatttgat aaaataattc
    32821 tatatccgat aaataaacta agatttcaac aactaactaa aaaggagtgt tcttaatggc
    32881 acaaaaacca gtagataata ttactcaaat tattggcggt acaccggtag tcaaattgag
    32941 aaatgtagta gatgacaatg cagcagatgt ttatgtaaaa ttggaatatc aaaatccagg
    33001 tggttctgta aaggatagaa ttgctttagc aatgattgaa aaagcagagc gagaaggcaa
    33061 aattaaacct ggcgatacaa ttgtagaacc aacaagtggt aatacaggta tcggtttagc
    33121 atttgtatgt gctgctaaag gatataaagc agtatttact atgcccgaaa caatgagcca
    33181 agagcgtcgt aatttattaa aagcatacgg tgcggaatta gttttaacgc ctggatcaga
    33241 agcgatgaaa ggtgcaatta aaaaagctaa agaattgaaa gaagaacatg gttacttcga
    33301 gccacaacaa tttgaaaacc ctgcgaaccc tgaagttcat gagttaacta caggtcctga
    33361 gttattacaa caatttgaag ggaaaactat cgatgcgttc ctagctggtg ttggtactgg
    33421 tggtacgtta tctggtgtag gtaaagttct gaaaaaagaa tatcctaaca tcgaaattgt
    33481 tgctatagag cctgaggctt ctccagtatt gagcggtggt gagccaggtc cacataaatt
    33541 acaaggttta ggtgctggat ttattccagg cactttgaat acagaaatct atgacagtat
    33601 tattaaagta ggaaatgata cagcgatgga aatgtctcgt cgagttgcta aagaggaagg
    33661 tattttagca ggtatttcat caggtgctgc gatttatgct gccattcaaa aagcaaaaga
    33721 attaggaaaa ggtaaaacag tagtaacagt attgccgagt aatggtgaac gctacttatc
    33781 aacaccttta tattcattcg atgactaatt aatgtcattt aaaagagtga gttatctttt
    33841 tgagataact tgctcttttt ttctaccatg tatattttta aaaatatgag cgttaaatta
    33901 aacatttttc tgataaaaat atccagtgaa tgataagata ataaacgtac atactaataa
    33961 ctagtaaata gcaggagtaa attttattag agttaaacaa tacataatta aagggtggtt
    34021 aacatgacta aaacaaaaat tatgggcata ttaaacgtca cacctgattc attctcagat
    34081 ggtggaaaat ttaataatgt tgaatcagct ataaatagag tgaaagccat gatagatgaa
    34141 ggtgctgaca ttatagatgt tggaggtgtt tcaacgagac ccggtcatga aatggtttca
    34201 ttagaagaag agatgaacag agtattacct gttgttgaag ctattgtcgg ttttgatgta
    34261 aaaatttcag tcgatacatt tcgaagtgag gttgctgaag catgtttaaa attaggcgtt
    34321 gatatgatta atgatcaatg ggcgggtctg tatgatcatc gtatgttcca aattgtagct
    34381 aaatatgacg cggaaattat tttaatgcat aatggaaatg gtaatcgtga tgaaccggtt
    34441 gtcgaagaaa tgttaacatc tttgttagca caagcacatc aagctaaaat agctggtata
    34501 ccttcaaata aaatttggct agatccaggt ataggtttcg ctaaaactag aaatgaagaa
    34561 gccgaagtta tggcaagact ggatgaactt gttgcaacag aatatccagt tttattagcg
    34621 acaagccgga aacgtttcac taaagagatg atgggttatg atacaacacc ggttgaaaga
    34681 gatgaagtaa ctgcagctac gactgcatat ggtattatga aaggcgttag agcagtacgc
    34741 gttcataatg tcgagttgaa tgctaaatta gctaaaggta tagatttttt aaaggagaat
    34801 gaaaatgcaa gacacaatct ttcttaaagg tatgcgcttt tatggatatc atggtgcttt
    34861 atcagctgaa aatgaaatag ggcaaatttt caaagtggat gtaactttga aagtagactt
    34921 agctgaagct gggcgtactg ataatgttat tgatacagtt cattatggtg aagtgttcga
    34981 agaggttaaa tcaattatgg aaggtaaggc cgttaattta cttgagcatc tagctgaacg
    35041 tattgcaaat cgtataaatt cacaatataa tcgtgtaatg gaaacgaaag tgagaatcac
    35101 taaagaaaac ccaccgattc cgggtcatta tgatggagta ggtatcgaaa tagtgaggga
    35161 gaataaatga ttcaagcata cttaggatta ggtagtaata ttggtgatag agaaagccag
    35221 ttaaacgatg ctataaagat tttgaatgaa tatgatggta ttaacgtatc taatatttct
    35281 ccgatttatg aaacagcacc agttgggtat actgagcaac ctaacttttt aaatttgtgt
    35341 gttgaaattc aaacaacact cacagtatta caactgttgg aatgttgttt gaagacagaa
    35401 gaatgtttac accgtattag aaaggaacga tggggtccta gaactttaga tgtggatatt
    35461 ttgttgtatg gagaagaaat gatagattta ccaaaactgt cggtgccaca tccgagaatg
    35521 aatgaacgtg catttgtttt aatcccatta aatgatatag cagcaaatgt cgtagaacca
    35581 cgttcgaaat tgaaagtgaa agatttagtt tttgtcgatg acagtgtaaa gagatataaa
    35641 taatgtattg ttgagaacat tcatatttat tgggaataga ttattgatta ttggagatgt
    35701 ttccgcattt tgattatctc taaatgcatt tgatttcgaa ttagtatatg atgatttagt
    35761 atgtgttaga attaagttat ttcataaaat caaagtaagc aatatttgat aaattgctgt
    35821 aatttattta ggcttttgtt gaagtttgtg gaagataatt tttatacatt tacttagggt
    35881 tgtattaatg ataatcgtat tttaaatgaa taagtaattc ataaacgaaa acagaaattg
    35941 ctttattaca tttacaagct cttgtaaaat taaaaaagtg ataaaattga tgttatgaat
    36001 ataagaaaac atgccacatc ataactttaa ggtgtaatgg ttaatgataa agtattagaa
    36061 acatcgaaag agatgtatgt tgagcaaaaa tgtctgatat tttataaaac tttaaaggaa
    36121 aatgtttgag tgtaccagtt ggaatactaa aggattacaa caagttaaag gagagaaagt
    36181 tatgtcagaa gaaatgaatg accaaatgtt ggttcgacgt caaaaattac aagaattata
    36241 tgatcttggt atagacccgt ttggttctaa atttgaccgt tcaggtttat ctagtgattt
    36301 gaaagaagag tgggaccagt attctaaaga agaattggta gaaaaagaag cggatagtca
    36361 tgtcgctata gctggacgat taatgactaa gcgtggtaaa ggtaaagcag gatttgcaca
    36421 cgttcaggac ttagctggac aaattcaaat ttacgttcgt aaagatcaag ttggcgatga
    36481 cgaatttgat ttatggaaaa atgctgattt aggcgatatc gttggtgttg aaggtgtaat
    36541 gttcaaaaca aatactggcg aattatcggt taaagcgaag aaattcacgc tactaactaa
    36601 atcattgcga ccattaccgg ataaattcca cggtttacag gatattgaac agagatatcg
    36661 tcaaagatat ttagatttaa ttacgaacga agatagcact cgtacattta ttaatcgtag
    36721 taaaatcatt caagaaatgc gtaattattt aaataataaa ggtttcttgg aagtagaaac
    36781 acctatgatg caccaaattg ctggtggagc agctgctaga ccatttgtaa cacatcataa
    36841 tgcattagat gcaacgttat acatgcgtat tgctattgag ttgcatttaa aacgtttaat
    36901 tgtcggtgga cttgaaaaag tatatgaaat tggtagagta ttccgtaatg aaggtgtatc
    36961 aactagacat aaccctgaat tcacaatgat tgaattatat gaagcatatg cagattatca
    37021 tgacattatg gatttaacag aatctatggt gagacatatt gccaatgaag tgttaggttc
    37081 tgcaaaagta caatacaatg gggaaacgat cgatttagaa tctgcttgga ctcgtttgca
    37141 tattgttgat gctgtaaaag aagctactgg tgtagatttt tatgaagtta aaagtgatga
    37201 agaagctaaa gctttagcta aagaacatgg tattgaaatt aaagatacaa tgaaatatgg
    37261 tcatatttta aatgaattct ttgagcaaaa agttgaagaa acacttattc agccaacgtt
    37321 tatctatggt catccgactg aaatttcacc tttagcgaag aaaaatcctg aagatcctag
    37381 atttactgat cgtttcgaat tgttcattgt aggtagagag catgcaaatg catttactga
    37441 attaaatgat cctattgatc aaaaaggtcg ttttgaagcg caacttgttg aaaaagcgca
    37501 aggtaatgat gaagcgcatg aaatggatga agattacatt gaagcgttag aatatggtat
    37561 gcctccgaca ggtggtcttg gtatcggtat tgacagattg gttatgttat taactgactc
    37621 tccatcaatc agagacgtat tattattccc ttatatgaga caaaaataaa tgacgttgat
    37681 tgttagtaag agctctcgtg tatacaacat gtgtatgcga gggctttctt aattatggta
    37741 attagttcgt gtttgaatgt ttttgatagt aatagttaac gatagtggtg ctatttttga
    37801 ctgttaaaca aggtagttgg ctgatagatg aaaatgacga tacgtatata gagtagttcg
    37861 gatgagaaat gttaacgata gacattgaga tatcttataa caaaaattgc tatattagta
    37921 taatttatct taatcagcta taaaagtact ttaaaattgt atagaatgtg tatggttttg
    37981 tacatatgtg tatgatagaa tactaaaagt gttatgaatt agagggcacg agaaatgtca
    38041 gttttgaaga ataaaaaagt tgattaaaag tgttgacttt atcaattgaa tgaagtaata
    38101 tataaaagtc gccaaaaaca gacgaaacac actaaaagct gatgtgacaa agtttacatc
    38161 aaagtgtaaa attaactatt gcaccttatt aattaagcgt gtatcatgaa taagtaagtt
    38221 attttgtctg gtgactatag caaggaggtc acacctgttc ccatgccgaa cacagaagtt
    38281 aagctcctta gcgtcgatgg tagtcgaact tacgttccgc cagagtagaa cgttgccagg
    38341 caaatgacaa atcggagaat tagctcagct gggagagcat ctgccttaca agcagagggt
    38401 cggcggttcg aacccgtcat tctccaccat ttattcttag atatagccgg cctagctcaa
    38461 ttggtagagc aactgacttg taatcagtag gttgggggtt caagtcctct ggccggcacc
    38521 atcttttgag ccattagctc agctggtaga gcatctgact tttaatcaga gggtcagagg
    38581 ttcgaatcct ctatggctca ttacgattta atttttatat ttagcaaaat aatgcagaag
    38641 tagttcagcg gtagaataca accttgccaa ggttggggtc gcgggttcga atcccgtctt
    38701 ctgctccatt attttgccgg ggtggcggaa ctggcagacg cacaggactt aaaatcctgc
    38761 ggtgagagat caccgtaccg gttcgattcc ggtcctcggc accattttag cgcccgtagc
    38821 tcaattggat agagcgtttg actacggatc aagaggttat gggttcgact cctatcgggc
    38881 gcgccatttt taaattaatt gaataacggg aagtagctca gcttggtaga gcacttggtt
    38941 tgggaccaag gggtcgcagg ttcgaatcct gtcttcccga ttacttctta aattccattt
    39001 tatgggggct tagctcagct gggagagcgc ctgctttgca cgcaggaggt cagcggttcg
    39061 atcccgctag tctccaccat ttatttttta cacgatgaac attgaaaact gaat
//
LOCUS       DAMQWL010000010        38785 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.010, whole genome shotgun sequence.
ACCESSION   DAMQWL010000010 DAMQWL010000000
VERSION     DAMQWL010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 38785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38785
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.010"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            243..1361
                     /gene="ald"
                     /locus_tag="PF788_000539"
     CDS             243..1361
                     /gene="ald"
                     /locus_tag="PF788_000539"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HDG6302819.1"
                     /translation="MLVAVVKELKQGEGRVACTPENVRKLTDAGHKVIVEKNAGIGSG
                     FSNDMYEKEGAKIVTHEQAWEADLVIKVKEPHESEYQYFKKNQIIWGFLHLASSKEIV
                     EKMQEVGVTAISGETIIKNGKAELLAPMSAIAGQRSAIMGAYYSEAQHGGQGTLVTGV
                     HENVDIPGSTYVIFGGGVAATNAANVALGLNAKVIIIELNDDRIKYLEDMYAEKDVTV
                     VKSTPENLAEQIKKADVFISTILIPGAKPPKLVTREMVKSMKKGSVLIDIAIDQGGTI
                     ETIRPTTISDPVYEEEGVIHYGVPNQPGAVPRTSTMALAQGNIDYILEICDKGLEQAI
                     KDNEALSTGVNIYQGQVTNQGLASSHDLDYKEILNVIE"
     gene            1456..2496
                     /gene="tdcB"
                     /locus_tag="PF788_000540"
     CDS             1456..2496
                     /gene="tdcB"
                     /locus_tag="PF788_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HDG6302820.1"
                     /translation="MTTNTVTLQTAHIVSLGDIEEAKASIKPFIRRTPLIKSMYLSQS
                     ITKGNVFLKLENMQFTGSFKFRGASNKINHLTDEQKEKGIIAASAGNHAQGVALTAKL
                     LGIDATIVMPETAPQAKQQATKGYGAKVILKGKNFNETRLYMEELAKENGMTIVHPYD
                     DKFVMAGQGTIGLEILDDIWNVNTVIVPVGGGGLIAGIATALKSFNPSIHIIGVQSEN
                     VHGMAESFYKRDLTEHRVDSTIADGCDVKVPGEQTYEVVKHLVDEFILVTEEEIEHAM
                     KDLMQRAKIITEGAGALPTAAILSGKINNKWLEDKNVVALVSGGNVDLTRVSGVIEHG
                     LNIADTSKGVVG"
     gene            2527..3849
                     /locus_tag="PF788_000541"
     CDS             2527..3849
                     /locus_tag="PF788_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDG6302821.1"
                     /translation="MSNGKELQKNIGFFSAFAIVMGTVIGSGVFFKISNVTEVTGTAG
                     MALFVWFLGGIITICAGLTAAELAAAIPETGGLTKYIEYTYGDFWGFLSGWAQSFIYF
                     PANVAALSIVFATQLINLFHLSIGSLIPIAIASALSIVLINFLGSKAGGILQSVTLVI
                     KLIPIIVIVIFGIFQSGDITFSLIPTTGNSGNGFFTAIGSGLLATMFAYDGWIHVGNV
                     AGELKNPKRDLPLAISVGIGCIMAVYLLINATFLLTLPIELLAGNLNAASDTSKILFG
                     ENGGKIITIGILISVYGTINGYTMTGMRVPYAMAERKLLPFSHLFAKLTKSGAPWFGA
                     IIQLIIAIIMMSMGAFDTITNMLIFVIWLFYCMSFVAVIILRKREPNMERPYKVPLYP
                     IIPLIAILAGSFVLINTLFTQFILAIIGILITALGIPVYYYKKKQKAA"
     gene            4006..5397
                     /gene="norB"
                     /locus_tag="PF788_000542"
     CDS             4006..5397
                     /gene="norB"
                     /locus_tag="PF788_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000414682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter NorB"
                     /protein_id="HDG6302822.1"
                     /translation="MEKPSREAFEGNNKLLIGIVLSVITFWLFAQSLVNVVPILEDSF
                     NTDIGTVNIAVSITALFSGMFVVGAGGLADKYGRIKLTNIGIILNILGSLLIIISNIP
                     LLLIIGRLIQGLSAACIMPATLSIIKSYYIGKDRQRALSYWSIGSWGGSGVCSFFGGA
                     VATLLGWRWIFILSIIISLIALFLIKGTPETKSKSISLNKFDIKGLVLLVIMLLSLNI
                     LITKGSELGVTSLLFITLLAIAIGSFSLFIVLEKRATNPLIDFKLFKNKAYTGATASN
                     FLLNGVAGTLIVANTFVQRGLGYSSLQAGSLSITYLVMVLIMIRVGEKLLQTLGCKKP
                     MLIGTGVLIVGECLISLTFLPEIFYVICCIIGYLFFGLGLGIYATPSTDTAIANAPLE
                     KVGVAAGIYKMASALGGAFGVALSGAVYAIVSNMTNIYTGAMIALWLNAGMGILSFVI
                     ILLLVPKQNDTQL"
     gene            5795..37060
                     /gene="ebh"
                     /locus_tag="PF788_000543"
                     /pseudo
     CDS             5795..37060
                     /gene="ebh"
                     /locus_tag="PF788_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109320.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hyperosmolarity resistance protein Ebh"
     gene            complement(37119..37520)
                     /locus_tag="PF788_000544"
     CDS             complement(37119..37520)
                     /locus_tag="PF788_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI family protein"
                     /protein_id="HDG6302823.1"
                     /translation="MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTA
                     EWAACIYALEHARELNVQNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKDFD
                     LLFVKWIPREQNKEANQHAQQALYKLIKKNK"
     gene            complement(38061..38765)
                     /locus_tag="PF788_000545"
     CDS             complement(38061..38765)
                     /locus_tag="PF788_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="queuosine precursor transporter"
                     /protein_id="HDG6302824.1"
                     /translation="MYNEILGLVTFIATFVLMVLMYRFFGKQGLIAWVAIGTIIANIQ
                     VIKTVEIFGISATLGNVMFASIYLATDILNDIYGRRVAKRAVWLGFSSTLIMIIVMQL
                     SLHFIPAPEDMAQKALHAIFDVVPRIALGSIVAYIIGQHIDVFIFSLIKKVFSSDKTF
                     FIRAYGSTFLSSIIDTALFVAIAFIGSLPGTVVFEIFITTYVLKLASTVFNVPFGYIA
                     KSFYRKGKIDKLDQGY"
BASE COUNT        15358 a         6742 c         6993 g         9692 t
ORIGIN      
        1 aacatatttg attaattagt ttttgagtca atgtattaat acaactataa atcaaatgga
       61 gtataagaaa taaatatagt ggtataattg cacataatat ttaagaataa gaataatata
      121 ttaaatattt attaacaaat tatagataaa atatgaataa ttaattaatg gtatttacat
      181 attcataacc aaaggataaa ataattgtga aattattcac aaatgaaaga ggagtgttgc
      241 aaatgttagt tgcagtagtc aaagaattaa aacaaggtga aggacgtgta gcttgcacac
      301 ccgaaaatgt gcgtaagtta acggatgcag gacataaagt aattgttgaa aaaaatgctg
      361 gcattggttc aggattttct aacgatatgt atgaaaaaga aggcgctaag atcgtaactc
      421 acgaacaagc atgggaagct gatcttgtta tcaaagtaaa agaacctcat gaaagcgaat
      481 atcaatattt caaaaagaat caaattatct ggggattttt acatctagca tcttcaaaag
      541 aaatagtaga aaaaatgcaa gaagttggtg taactgcgat tagtggtgaa accattataa
      601 aaaatggaaa agcagaatta ttagcgccaa tgagtgctat agcaggtcaa cgctcagcaa
      661 ttatgggagc ttactactct gaagcacaac atggtggtca aggtacttta gtgactggtg
      721 tacatgaaaa tgtggatata cctggtagta catatgtgat tttcggtggt ggagtagcag
      781 caacaaatgc agcaaatgtt gccttgggac taaatgctaa agtaatcatt atcgagttaa
      841 acgatgaccg cattaaatat cttgaagata tgtatgcaga aaaagatgtc acagtagtca
      901 aatcaacacc agaaaattta gcagaacaaa ttaagaaagc agatgtattt atttctacaa
      961 ttttaattcc aggtgcgaaa ccgccaaaat tggttactcg tgagatggtt aaatcaatga
     1021 aaaaaggttc agtattaatc gatatagcta ttgaccaagg tggaactatt gaaacaatta
     1081 gaccaactac aatttctgat ccagtgtatg aagaagaagg tgtgattcat tatggtgtac
     1141 caaatcaacc aggagcagtc ccaagaactt caacaatggc attagcacaa ggaaatattg
     1201 attatatatt agaaatttgt gacaaaggct tagaacaagc aattaaagat aatgaagcct
     1261 taagtactgg tgtaaacatt taccaaggac aagtgacaaa tcaaggatta gcttcatcac
     1321 atgacctaga ttataaagaa atattaaatg ttatcgaata gatagtaatt taaatgaaat
     1381 tgagtgaaat gaatatttta aatatagcat tatagtttgg actaaaaatt tacaaaacgg
     1441 aaggatgtaa ttattatgac aaccaacaca gttacattac aaacagcaca tattgtaagt
     1501 ttaggagata tcgaagaagc taaagcaagc attaaaccat ttattcgtcg aacacctcta
     1561 attaaatcaa tgtatttaag ccaaagtata actaaaggga atgtatttct aaaattagaa
     1621 aatatgcaat tcacaggatc ttttaaattt agaggcgcta gcaataaaat taatcactta
     1681 acagatgaac aaaaagaaaa aggcattatc gcagcatctg ctgggaacca tgcacaaggt
     1741 gttgctttaa cagctaaatt attaggcatt gatgcaacga ttgtaatgcc tgaaacagca
     1801 ccacaagcga aacaacaagc aacaaaaggc tatggggcaa aggttatttt aaaaggtaaa
     1861 aactttaacg aaactagact ttatatggaa gaattagcga aagaaaatgg catgacaatc
     1921 gttcatccat atgacgataa gtttgtaatg gcaggccaag gaacaattgg tttagaaatt
     1981 ttagatgata tttggaatgt gaatacagtc atcgtaccag ttggcggtgg aggattaatt
     2041 gcaggtattg ccaccgcatt aaaatcattt aacccttcaa ttcatattat cggtgttcaa
     2101 tctgagaatg ttcatggtat ggctgagtct ttctataaga gagatttaac tgaacatcga
     2161 gtggatagca caatagcaga tggttgtgat gtaaaagttc ctggtgaaca aacatatgaa
     2221 gtagttaaac atttagtaga tgaatttatt cttgttactg aagaagaaat tgaacatgct
     2281 atgaaagatt taatgcagcg tgccaaaatt attactgaag gtgcaggcgc attaccaaca
     2341 gctgcaattt taagtggaaa aataaacaat aaatggcttg aagataaaaa tgttgttgca
     2401 ttagtttcag gcgggaatgt tgacttaact agagtttcag gtgtcattga acatggactg
     2461 aatattgcag atacaagcaa gggtgtggta ggttaaaaca tttaatctta aaaatgaggt
     2521 gtaattatgt caaatggtaa agaattacaa aaaaatatag gtttcttctc agcgtttgct
     2581 attgttatgg ggacagttat tggttcagga gtattcttta aaatatcaaa cgtaacagaa
     2641 gtaacaggaa cagcaggaat ggccttgttt gtatggttcc taggcggcat cattaccatt
     2701 tgtgcggggt taacagcagc agaacttgct gctgcaatcc ctgaaacagg tggcttaacg
     2761 aagtatatag aatatacata cggtgatttc tggggcttcc tatcaggttg ggcgcaatca
     2821 tttatttatt ttccagctaa cgtagcagca ttgtctatcg tatttgcgac acagctaatt
     2881 aatttattcc atttatctat aggttcgtta ataccaatag caatcgcatc tgcgttatct
     2941 attgtgttga taaatttcct aggttcaaaa gcaggcggaa ttttacaatc agttacttta
     3001 gtaattaaac tgattccaat catcgttatt gtaatttttg gtatttttca atctggagat
     3061 atcacttttt cattaattcc aactacaggt aattcaggaa atggcttctt tacagcaatt
     3121 ggtagtggtt tattagcaac tatgtttgca tatgatggtt ggattcatgt aggaaatgtt
     3181 gcgggggaac ttaaaaatcc taaacgcgat ttacctttag cgatttcagt tggtatcggt
     3241 tgtattatgg ctgtgtattt attaattaac gctacattct tattaacgtt gccaatagaa
     3301 ctacttgctg gtaatttaaa tgcagcttca gatacatcaa aaatattatt tggtgaaaat
     3361 ggcggtaaga ttattacaat cggtatatta atttctgttt atggtacgat caatggctat
     3421 actatgactg gtatgcgcgt accatatgca atggctgaaa gaaaattatt gccatttagc
     3481 catttattcg caaaattaac aaaatctggc gcaccatggt ttggcgcaat tatacaactt
     3541 ataatcgcta tcatcatgat gtcaatggga gcatttgata caattacaaa tatgttaatc
     3601 tttgttattt ggttgttcta ttgtatgtca tttgttgcgg taataatttt aagaaaacgt
     3661 gaaccaaata tggaacgacc atataaagta ccgttatatc cgatcatacc tttaattgct
     3721 attttggcag gatcatttgt attaattaat acactgttta cacaatttat attagcaatc
     3781 attggaattc taataacagc acttggtata ccagtttatt actataaaaa gaaacaaaaa
     3841 gcagcataag gtaagataac tagcattgag aataaatgga tggactacta ataaatttaa
     3901 agttttacac attaaaatca aaaaccattc aattattcta tggaacagac aaatttctgt
     3961 tatggaattt gtctgttttt caaaagtata gggaggcaaa tagagatgga aaagccgtca
     4021 agagaggcat ttgaaggcaa taataagttg ttaataggaa ttgttctaag tgtaataacg
     4081 ttttggctat ttgcacaatc attggttaat gttgtaccaa tacttgaaga tagtttcaat
     4141 acagatattg gaacggttaa tatcgccgtt agtataactg ctttattttc aggaatgttt
     4201 gtagtaggag caggtggtct tgctgataaa tatggcagaa ttaaactcac gaacattggt
     4261 attatcttaa atatattagg ttcattatta atcattattt caaatattcc tttattactt
     4321 attataggaa gattaattca aggactttca gcagcatgta ttatgcctgc aactttgtct
     4381 attattaagt catattacat tgggaaagat agacaacgcg ctttaagtta ttggtcaatt
     4441 ggctcatggg gcggctctgg tgtttgttca ttttttggag gtgcagttgc aacgctttta
     4501 ggttggcgtt ggattttcat cctatcaatt ataatttcat taattgcact gtttcttatt
     4561 aaaggcacac ctgaaactaa atctaaatcg atttctctaa ataaatttga cattaaaggt
     4621 ctggttcttt tagtcattat gctcctcagt ttaaatattt taattactaa aggatcagaa
     4681 ttaggtgtaa cctcacttct ttttattact ttattagcta ttgcaattgg atcttttagt
     4741 ttatttatag ttcttgaaaa gcgtgctaca aatcctttaa tcgattttaa attatttaaa
     4801 aataaagctt acacaggtgc aacagcttca aactttttgt taaatggtgt tgcaggaaca
     4861 ttaatagtag ccaacacatt tgttcaaaga ggtttaggat attcttcatt gcaagcagga
     4921 agtttatcaa tcacttattt agtaatggta ctaattatga ttcgtgttgg tgaaaagtta
     4981 cttcaaacac tcggatgcaa gaaaccaatg ttaattggaa caggagttct tattgtcgga
     5041 gaatgtctca tttcattaac tttcttgcca gaaatattct atgtcatttg ttgtattata
     5101 ggttatttat tctttggttt aggactaggg atatatgcta caccatcaac agatacagca
     5161 attgcaaatg caccgttaga aaaagtaggc gttgctgcag gtatctataa aatggcttct
     5221 gcattaggtg gagcatttgg cgtcgcattg agtggtgcag tatatgcaat cgtatcaaat
     5281 atgacaaaca tttatacagg tgcaatgatt gcattatggt taaatgcagg tatgggaata
     5341 ttatcattcg ttatcatttt gttacttgtg cctaaacaaa acgatactca attatgataa
     5401 ttgagaatta aattgaaatc atacaagtcg ctacaatatt aaacaaaaat ataaaccgat
     5461 tcttatgtgt cattatttta aatgaacata gggattggtt ttttattact cttttacgct
     5521 actttattta taattattat aaattgtcac aaattcaatt taccttacaa tatattttgt
     5581 gttattatat tctggagcat aaataaattg ttcaacacat agttgtaatg tgtttcaata
     5641 ctttttggat agattgcgaa attgtattga atcgtcatcg ttttaaattt ttaaatgaga
     5701 atggaatgag cattacaata cacaagcaat caaaagtaaa tacattcaca acacaacaga
     5761 gacataacaa caagataagg agtgaacaat agctgtgaat tatcgtgata aaattcaaaa
     5821 gtttagtatt cgtaaatata cagttggtac attttcaact gtcattgcga cattggtatt
     5881 tttaggattc aatacatcac aagcacatgc tgctgaaaca aatcaaccag caagcgtggt
     5941 taaacagaaa caacaaagta ataatgaaca gactgagaat cgagaatctc aagtacaaaa
     6001 ttctcaaaat tcacaaaatg gtcaatcatt atctgctact catgaaaatg agcaaccaaa
     6061 tattagtcaa gctaatttag tagatcaaaa agtagcgcaa tcatctacta ctaatgatga
     6121 acaaccagca tctcaaaatg taaatacaaa gaaagattcg gcaacggctg cgacaacaca
     6181 accagataaa gaacaaagta agcataaaca aaacgaaagt caatctgcta ataaaaatgg
     6241 aaacgacaat agagcggctc atgtagaaaa tcatgaagca aatgtagtaa cagcttcaga
     6301 ttcatctgat aatggtaacg tacaacatga ccgaaatgaa ttacaagcgt tttttgatgc
     6361 aaattatcat gattatcgct ttattgaccg tgaaaatgca gattctggca catttaacta
     6421 tgtaaaaggc atttttgata agattaatac gttattaggc agtaatgatc caataaacaa
     6481 taaagacttg caacttgcat acaaagaatt ggaacaagct gttgctttaa ttcgtacaat
     6541 gcctcaacgt caacagacta gccgacgttc aaatagaatt caaacgcgtt cggttgagtc
     6601 aagagctgca gagcctagat cagtatcaga ctatcaaaat gcaaattcat catattatgt
     6661 tgaaaatgct aatgatggtt cgggctatcc tgttggtaca tatatcaatg cttctagtaa
     6721 aggggcgcca tataatttac caactacacc atggaataca ttgaaggcct ctgactcaaa
     6781 ggaaattgct cttatgacag cgaaacaaac tggagacggg taccaatggg ttattaagtt
     6841 taataaagga catgctccac atcaaaatat gatcttttgg tttgcattac cagcagacca
     6901 agtgccagta ggaagaactg actttgtaac agttaattca gatggaacaa atgtacaatg
     6961 gagtcatgga gcaggagcag gtgcaaataa accacttcaa caaatgtggg aatatggagt
     7021 aaatgatcct catcgttcac atgactttaa aataagaaat agaagtggcc aagtaatata
     7081 tgactggcca actgtccata tttattcttt agaagattta tctagagcga gtgattattt
     7141 tagtgaagct ggagcgacac ctgctactaa agcttttggt agacaaaatt ttgaatatat
     7201 taatggtcaa aaacctgctg aatcaccggg tgttcctaaa gtttatactt tcatcggtca
     7261 aggtgatgca agttatacaa tttcatttaa aacacaaggt ccaactgtta ataaattgta
     7321 ctatgcagca ggtgggcgtg ctttagagta caatcaatta tttatgtaca gtcaactata
     7381 cgtcgaatca acgcaagacc atcaacaacg tcttaatggt ttaagacaag tggttaatcg
     7441 tacatatcgc ataggtacaa ctaaacgtgt agaagtgagt caaggaaatg tacaaacgaa
     7501 aaaggtatta gaaagtacaa acctaaatat agatgatttt gttgatgatc ctttaagtta
     7561 tgttaagacg ccgagtaata aagtgttagg attttattcg aataatgcaa atactaatgc
     7621 ttttagaccg ggtggagccc aacaattaaa tgaatatcaa ttaagtcaat tatttactga
     7681 tcaaaaatta caagaagcag caagaactag aaacccaata agattaatga ttggtttcga
     7741 ctatcctgat gcttatggta atagtgaaac tttagttcct gttaacttaa cggtattacc
     7801 tgaaatccaa cataatatta aattctttaa aaatgacgat actcaaaata ttgctgaaaa
     7861 accattttca aaacaagctg ggcatccagt tttctatgta tatgcaggta accaagggaa
     7921 tgcttccgtg aatttaggtg gtagcgtaac atctattcaa ccattacgta ttaatttaac
     7981 aagtaatgag aattttacag ataaagattg gcaaattaca ggtattccgc gtacattaca
     8041 cattgaaaac tcgacaaata gacctaataa tgccagagaa cgcaatattg aacttgttgg
     8101 taacttatta ccaggggatt actttggaac gatacgtttt ggacgtaaag aacaattatt
     8161 cgaaattcgt gttaaaccac atacaccaac aattacaacg acagctgagc aattaagagg
     8221 tacagcatta caaaaagtgc ctgttaatat ttcgggaata ccgttggatc catcggcatt
     8281 ggtttattta gttgcaccaa caaatcaaac tacgaatggt ggtagtgagg cagatcaaat
     8341 accatctggt tatacgatac ttgcgactgg tacacctgat ggggtgcata atacaattac
     8401 tatacgaccg caagattatg ttgtattcat accacctgta ggtaaacaaa ttagagcagt
     8461 agtttattat aataaagtag ttgcatctaa tatgagtaat gctgttacta ttttgccaga
     8521 tgacattcca ccaacaatca ataatcctgt tggaataaat gccaaatact atcgaggcga
     8581 cgaagtcaac tttacaatgg gtgtctctga tagacattct ggtataaaaa atacaactat
     8641 tacgacattg ccgaatggtt ggacatcaaa tttaacaaaa gcggataaga ataatggctc
     8701 attatctatt acaggtagag tgagtatgaa tcaggcattt aacagtgata ttacatttaa
     8761 agtgtcagcg acagacaatg tcaataatac gacaaatgat agtcaatcta aacatgtttc
     8821 aattcatgta ggtaaaatta gtgaagatgc tcatccgatt gtattaggaa atactgagaa
     8881 agttgtagta gtcaatccga ctgctgtatc taatgatgaa aagcaaagca taattactgc
     8941 ctttatgaat aaaaaccaaa atataagagg atatttagca tcaactgatc cagtaactgt
     9001 cgataataat ggtaatgtca cattacatta ccgtgatggc tcatcgacaa cgcttgatgc
     9061 tacaaatgtg atgacatacg aaccagttgt gaaacctgaa taccaaactg tcaatgctgc
     9121 taaaacagca acggtaacga ttgctaaagg acaatcattt agtattggtg atattaaaca
     9181 atattttact ttaagtaatg gacaacctat tccaagtggc acatttacaa atattacatc
     9241 tgatagaact attccaactg cacaagaagt tagtcaaatg aacgcaggca cgcagttata
     9301 ccatataact gctacaaatg cgtatcataa agatagtgaa gacttctata ttagtttgaa
     9361 aatcatcgat gtgaaacaac cagaaggcga tcaacgtgta tatcgtacat caacatatga
     9421 tttaactact gatgaaatct caaaagtaaa acaagcattt attaatgcaa atagagatgt
     9481 aattacgctt gccgaaggtg atatttcagt tacaaataca cctaatggtg ctaatgtaag
     9541 tactattaca gtaaatatta ataaaggtcg attaacgaaa tcattcgcgt caaacctagc
     9601 taatatgaat ttcttgcgtt gggttaattt cccacaagat tatacagtga catggacgaa
     9661 tgcaaaaatt gcaaacagac caacagatgg tggtttatca tggtctgatg accataaatc
     9721 tttaatttat cgttatgatg ctacattagg tactcaaatt acgacgaatg atattttaac
     9781 aatgttaaaa gcaacaacta cagtgcctgg attgcgaaat aacattactg gtaatgaaaa
     9841 atcacaagca gaagctggcg gaagacctaa ctttagaacg actggttatt cacaatcaaa
     9901 tgcgacaact gatggtcaac gtcaatttac gttgaatggt caagtgattc aagtgttaga
     9961 catcatcaac ccttcaaacg gttatggtgg gcaacctgtt acaaattcaa atactcgtgc
    10021 aaaccatagt aactcaactg ttgttaacgt aaacgaaccg gcagctaatg gtgctggcgc
    10081 atttacaatt gaccacgttg taaaaagtaa ttctacacat aatgcaagtg atgcagttta
    10141 taaagcacag ttatacttaa cgccatatgg tccaaaacaa tatgttgaac atttaaatca
    10201 aaatacagga aatactactg acgctattaa catttatttt gtaccaagtg acttagtgaa
    10261 tccaacaatt tcagtaggta attacactaa tcatcaagtg ttctcaggtg aaacatttac
    10321 aaatactatt acagcgaatg ataactttgg tgtgcaatct gtaactgtac caaatacatc
    10381 acaaattaca ggtactgttg ataataacca tcaacatgtt tctgcaacgg caccaaatgt
    10441 gacatcagca actaataaga caatcaattt attagcaact gatacaagcg gcaatacagc
    10501 tacaacttcg ttcaatgtaa cagtgaaacc tttgcgtgat aaatatcgag ttggtacttc
    10561 atcaacggct gctaatcctg tgagaattgc caatatttcg aataatgcga cagtatcaca
    10621 agctgatcaa acgacaatta ttaattcgtt aacgtttact gaaacagtac caaatagaag
    10681 ttatgcaaga gcaagtgcga atgaaatcac tagtaaaaca gttagtaatg tcagtcgtac
    10741 tggaaataat gccaatgtca cagtaactgt tacttatcaa gatggaacaa catcaacagt
    10801 gactgtacct gtaaagcatg tcattccaga aatcgttgca cattcgcatt acactgtaca
    10861 aggccaagac ttcccagcag gtaatggttc tagtgcatca gattacttta agttatctaa
    10921 tggtagtgac attgcagatg caactattac atgggtaagt ggacaagcgc caaataaaga
    10981 taatacacgt attggtgaag atataactgt aactgcacat atcttaattg atggcgaaac
    11041 aacgccgatt acgaaaacag caacatataa agtagtaaga actgtaccga aacatgtctt
    11101 tgaaacagcc agaggtgttt tatacccagg tgtttcagat atgtatgatg cgaaacaata
    11161 tgttaagcca gtaaataatt cttggtcgac aaatgcgcaa catatgaatt tccaatttgt
    11221 tggaacatat ggtcctaaca aagatgttgt aggcatatct actcgtctta ttagagtgac
    11281 atatgataat agacaaacag aagatttaac tattttatct aaagttaaac ctgacccacc
    11341 tagaattgac gcaaactctg tgacatataa agcaggtctt acaaaccaag aaattaaagt
    11401 taataacgta ttaaataact cgtcagtaaa attatttaaa gcagataata caccattaaa
    11461 tgtcacaaat attactcatg gtagcggttt tagttcggtt gtgacagtaa gtgacgcgtt
    11521 accaaatggc ggaattaaag caaaatcttc aatttcaatg aacaatgtga cgtatacgac
    11581 gcaagacgaa catggtcaag ttgttacagt aacaagaaat gaatctgttg attcaaatga
    11641 cagtgcaaca gtaacagtga caccacaatt acaagcaact actgaaggcg ctgtatttat
    11701 taaaggtggc gacggttttg atttcggaca cgtagaaaga tttattcaaa acccgccaca
    11761 tggggcaacg gttgcatggc atgatagtcc agatacatgg aagaatacag tcggtaacac
    11821 tcataaaact gcggttgtaa cattacctaa tggtcaaggt acgcgtaatg ttgaagttcc
    11881 agtcaaagtt tatccagttg ctaatgcaaa ggcgccatca cgtgatgtga aaggtcaaaa
    11941 tttgactaat ggaacggatg cgatgaacta cattacattt gatccaaata caaacacaaa
    12001 tggtatcact gcagcatggg caaatagaca acaaccaaat aaccaacaag caggcgtgca
    12061 acatttaaat gtcgatgtca catatccagg tatttcagct gctaaacgag ttcctgttac
    12121 tgttaatgta tatcaatttg aattccctca aactacttat acgacaacgg ttggaggcac
    12181 tttagcaagt ggtacgcaag catcaggata tgcacatatg caaaatgcta ctggtttacc
    12241 aacagatgga tttacgtata aatggaatcg tgatactaca ggtacaaatg acgcaaactg
    12301 gtcagctatg aataaaccga atgtggctaa agtcgttaac gcaaaatatg acgtcatcta
    12361 taacggacat acttttgcaa catctttacc agcgaaattt gtagtaaaag atgtgcaacc
    12421 agcgaaacca actgtgactg aaacagcggc aggagcgatt acaattgcac ctggagcaaa
    12481 ccaaacagtg aatacacatg ccggtaacgt aacgacatac gctgataaat tagttattaa
    12541 acgtaatggt aacgttgtga cgacatttac acgtcgcaat aatacgagtc catgggtgaa
    12601 agaagcatct gcagcaactg tagcaggtat tgctggaact aataatggta ttactgttgc
    12661 agcaggtact ttcaaccctg ctgatacaat tcaagttgtt gcaacgcaag gaagcggaga
    12721 gacagtgagt gatgagcaac gtagtgatga tttcacagtt gtcgcaccac aaccgaacca
    12781 agcgactact aagatttggc aaaatggtca tattgatatc acgcctaata atccatcagg
    12841 acatttaatt aatccaactc aagcaatgga tattgcttac actgaaaaag tgggtaatgg
    12901 tgcagaacat agtaagacaa ttaatgttgt tcgtggtcaa aataatcaat ggacaattgc
    12961 gaataagcct gactatgtaa cgttagatgc acaaactggt aaagtgacgt tcaatgccaa
    13021 tactataaaa ccaaattcat caatcacaat tactccgaaa gcaggtacag gtcactcagt
    13081 aagtagtaat ccaagtacat taactgcacc ggcagctcat actgtcaaca caactgaaat
    13141 tgtgaaagat tatggttcaa atgtaacagc agctgaaatt aacaatgcag ttcaagttgc
    13201 taataaacgt actgcaacga ttaaaaatgg cacagcaatg cctactaatt tagctggtgg
    13261 tagcacaacg acgattcctg tgacagtaac ttacaatgat ggtagtactg aagaagtaca
    13321 agagtccatt ttcacaaaag cggataaacg tgagttaatc acagctaaaa atcatttaga
    13381 tgatccagta agcactgaag gtaaaaagcc aggtacaatt acgcagtaca ataatgcaat
    13441 gcataatgcg caacaacaaa tcaatactgc gaaaacagaa gcacaacaag tgattaataa
    13501 tgagcgtgca acaccacaac aagtttctga cgcactaact aaagttcgtg cagcacaaac
    13561 taagattgat caagctaaag cattacttca aaataaagaa gataatagcc aattagtaac
    13621 gtctaaaaat aacttacaaa gttctgtgaa ccaagtacca tcaactgctg gtatgacgca
    13681 acaaagtatt gataactata atgcgaagaa gcgtgaagca gaaactgaaa taactgcagc
    13741 tcaacgtgtt attgacaatg gcgatgcaac tgcacaacaa atttcagatg aaaaacatcg
    13801 tgtcgataac gcattaacag cattaaacca agcgaaacat gatttaactg cagatacaca
    13861 tgccttagag caagcagtgc aacaattgaa tcgcacaggt acaacgactg gtaagaagcc
    13921 ggcaagtatt actgcttaca ataattcgat tcgtgcactt caaagtgact taacaagtgc
    13981 taaaaatagc gctaatgcta ttattcaaaa gccaataaga acagtacaag aagtgcaatc
    14041 tgcgttaaca aatgtaaatc gtgtcaatga gcgattaacg caagcaatta atcaattagt
    14101 acctttagct gataatagtg ctttaaaaac tgctaagacg aaacttgatg aagaaatcaa
    14161 taaatcagta actactgatg gtatgacaca atcatcaatc caagcatatg aaaatgctaa
    14221 acgtgcgggt caaacagaat caacaaatgc acaaaatgtt attaacaatg gtgatgcgac
    14281 tgaccaacaa attgccgcag aaaaaacaaa agtagaagaa aaatataata gcttaaaaca
    14341 agcaattgct ggattaactc cagacttggc accattacaa actgcaaaaa ctcagttgca
    14401 aaatgatatt gatcagccaa cgagtacgac tggtatgaca agcgcatcta ttgcagcatt
    14461 taatgaaaaa ctttcagcag ctagaactaa aattcaagaa attgatcgtg tattagcctc
    14521 acatccagat gttgcgacaa tacgtcaaaa cgtgacagca gcgaatgccg ctaaatcagc
    14581 acttgatcaa gcacgtaatg gcttaacagt cgataaagcg cctttagaaa atgcgaaaaa
    14641 tcaactacaa catagtattg acacgcaaac aagtacaact ggtatgacac aagactctat
    14701 aaatgcatac aatgcgaagt taacagctgc acgtaataag attcaacaaa tcaatcaagt
    14761 attagcaggt tcaccgactg tagaacaaat taatacaaat acgtctacag caaatcaagc
    14821 taaatctgat ttagatcatg cacgtcaagc tttaacacca gataaagcgc cgcttcaaac
    14881 tgcgaaaacg caattagaac aaagcattaa tcaaccaacg gatacaacag gtatgacgac
    14941 cgcttcgtta aatgcgtaca accaaaaatt acaagcagcg cgtcaaaagt taactgaaat
    15001 taatcaagtg ttgaatggca acccaactgt ccaaaatatc aatgataaag tgacagaggc
    15061 aaaccaagct aaggatcaat taaatacagc acgtcaaggt ttaacattag atagacagcc
    15121 agcgttaaca acattacatg gtgcatctaa cttaaaccaa gcacaacaaa ataatttcac
    15181 gcaacaaatt aatgctgctc aaaatcatgc tgcgcttgaa acaattaagt ctaacattac
    15241 ggctttaaat actgcgatga cgaaattaaa agacagtgtt gcggataata atacaattaa
    15301 atcagatcaa aattacactg acgcaacacc agctaataaa caagcgtatg ataatgcagt
    15361 taatgcggct aaaggtgtca ttggagaaac gactaatcca acgatggatg ttaacacagt
    15421 gaaccaaaaa gcagcatctg ttaaatcgac gaaagatgct ttagatggtc aacaaaactt
    15481 acaacgtgcg aaaacagaag caacaaatgc gattacgcat gcaagtgatt taaaccaagc
    15541 acaaaagaat gcattaacac aacaagtgaa tagtgcacaa aacgtgcaag cagtaaatga
    15601 tattaaacaa acgactcaaa gcttaaatac tgctatgaca ggtttaaaac gtggcgttgc
    15661 taatcataac caagtcgtac aaagtgataa ttatgtcaac gcagatacta ataagaaaaa
    15721 tgattacaac aatgcataca accatgcgaa tgacattatt aatggtaatg cacaacatcc
    15781 agttataaca ccaagtgatg ttaacaatgc tttatcaaat gtcacaagta aagaacatgc
    15841 attgaatggt gaagctaagt taaatgctgc gaaacaagaa gcgaatactg cattaggtca
    15901 tttaaacaat ttaaataatg cacaacgtca aaacttacaa tcgcaaatta atggtgcgca
    15961 tcaaattgat gcagttaata caattaagca aaatgcaaca aacttgaata gtgcaatggg
    16021 taacttaaga caagctgttg cagataaaga tcaagtgaaa cgtacagaag attatgcgga
    16081 tgcagataca gctaaacaaa atgcatataa cagtgcagtt tcaagtgccg aaacaatcat
    16141 taatcaaaca acaaatccaa cgatgtctgt tgatgatgtt aatcgtgcaa cttcagctgt
    16201 tacttctaat aaaaatgcat taaatggtta tgaaaaatta gcacaatcta aaacagatgc
    16261 tgcaagagca attgatgcat taccacattt aaataatgca caaaaagcag atgttaaatc
    16321 taaaattaat gctgcatcaa atattgctgg cgtaaatact gttaaacaac aaggtacaga
    16381 tttaaataca gcgatgggta acttgcaagg tgcaatcaat gatgaacaaa cgacgcttaa
    16441 tagtcaaaac tatcaagatg cgacacctag taagaaaaca gcatacacaa atgcggtaca
    16501 agctgcgaaa gatattttaa ataaatcaaa tggtcaaaat aaaacgaaag atcaagttac
    16561 tgaagcgatg aatcaagtga attctgctaa aaataactta gatggtacgc gtttattaga
    16621 tcaagcgaag caaacagcaa aacagcagtt aaataatatg acgcatttaa caactgcaca
    16681 aaaaacgaat ttaacaaacc aaattaatag tggtactact gtcgctggtg ttcaaacggt
    16741 tcaatcaaat gccaatacat tagatcaagc catgaatacg ttaagacaaa gtattgccaa
    16801 caaagatgcg actaaagcaa gtgaagatta cgtagatgct aataatgata agcaaacagc
    16861 atataacaac gcagtagctg ctgctgaaac gattattaat gctaatagta atccagaaat
    16921 gaatccaagt acgattacat aaaaagcaga gcaagtgaat agttctaaaa cggcacttaa
    16981 cggtgatgaa aacttagctg ctgcaaaaca aaatgcgaaa acgtacttaa acacattgac
    17041 aagtattaca gatgctcaaa agaacaattt gattagtcaa attactagtg cgacaagagt
    17101 gagtggtgtt gatactgtaa aacaaaatgc gcaacatcta gaccaagcta tggctagctt
    17161 acagaatggt attaacaacg aatctcaagt gaaatcatct gagaaatatc gtgatgctga
    17221 tacaaataaa caacaagagt atgataatgc tattactgca gcgaaagcga ttttaaataa
    17281 atcgacaggt ccaaacactg cgcaaaatgc agttgaagca gcattacaac gtgttaataa
    17341 tgcgaaagat gcattgaatg gtgatgcaaa attaattgca gctcaaaacg cagcgaaaca
    17401 acatttaggt actttaacgc atatcactac agctcaacgt aatgatttaa caaatcaaat
    17461 ttcacaagct acaaacttag ctggtgttga atctgttaaa caaaatgcga atagtttaga
    17521 tggtgctatg ggtaacttac aaacggctat caacgataag tcaggaacat tagcgagcca
    17581 aaacttcttg gatgctgatg agcaaaaacg taatgcatac aatcaagctg tatcagcagc
    17641 cgaaaccatt ttaaataaac aaactggacc gaatacagcg aaaacagcag tcgaacaagc
    17701 acttaataat gttaataatg cgaaacatgc attaaatggt acgcaaaact taaacaatgc
    17761 gaaacaagca gcgattacag caatcaatgg cgcatctgat ttaaatcaaa aacaaaaaga
    17821 tgcattaaaa gcacaagcta atggtgctca acgcgtatct aatgcacaag atgtacagca
    17881 caatgcgact gaactgaaca cggcaatggg cacattaaaa catgccatcg cagataagac
    17941 gaatacgtta gcaagcagta aatatgttaa tgccgatagc actaaacaaa atgcttacac
    18001 aactaaagtt accaatgctg aacatattat tagcggtacg ccaacggttg ttacgacacc
    18061 ttcagaagta acagctgcag ctaatcaagt aaacagcgcg aaacaagaat taaatggtga
    18121 cgaaagatta cgtgaagcaa aacaaaacgc caatactgct attgatgcat taacacaatt
    18181 aaatacacct caaaaagcta aattaaaaga acaagtggga caagccaata gattagaaga
    18241 cgtacaaact gttcaaacaa atggacaagc attgaacaat gcaatgaaag gcttaagaga
    18301 tagtattgct aacgaaacaa cagtcaaaac aagtcaaaac tatacagacg caagtccgaa
    18361 taaccaatca acatataata gcgctgtgtc aaatgcgaaa ggtatcatta atcaaactaa
    18421 caatccgact atggatacta gtgcgattac ccaagctaca acacaagtga ataatgctaa
    18481 aaatggttta aacggtgctg aaaacttaag aaatgcacaa aacactgcta agcaaaactt
    18541 aaatacatta tcacacttaa caaataacca aaaatctgcc atctcatcac aaattgatcg
    18601 tgcaggtcat gtgagtgagg taactgctac taaaaatgca gcaactgagt tgaatacgca
    18661 aatgggtaac ttggaacaag ctatccatga tcaaaacaca gttaaacaaa gtgttaaatt
    18721 tactgatgca gataaagcta aacgtgatgc gtatacaaat gcggtaagca gagctgaagc
    18781 aattctgaat aaaacgcaag gtgcaaatac gtctaaacaa gatgttgaag cggctattca
    18841 aaatgtttca agtgctaaaa atgcattgaa tggtgatcaa aacgttacaa atgcgaagaa
    18901 tgcagctaaa aatgcattaa ataacttaac gtcaattaat aatgcacaaa aacgtgactt
    18961 aacaactaaa attgatcaag caacaactgt agctggtgtt gaagctgtat ctaatacgag
    19021 tacacaattg aatacagcga tggctaactt gcaaaatggt attaatgata aaacaaatac
    19081 actagcaagt gaaaactatc atgatgctga ttcagataag aaaactgctt atactcaagc
    19141 cgttacgaac gcagaaaata ttttaaataa aaatagtgga tcaaatttag acaaaactgc
    19201 cgttgaaaac gcgttgtcac aagttgctaa tgcgaaaggt gccctaaatg gtaaccataa
    19261 tttagagcaa gctaaatcaa atgcaaacac tactataaac ggacttcaac atttaacaac
    19321 tgctcaaaaa gataaattga aacaacaagt gcaacaagca caaaatgttg caggtgtaga
    19381 tactgttaaa tcaagtgcca acacattaaa tggtgctatg ggtacgttaa gaaatagcat
    19441 acaagataac acagctacga aaaatggcca aaactatctt gatgctacag aacgtaacaa
    19501 aacaaactat aacaatgctg ttgatagtgc taatggtgtc attaatgcaa caagcaatcc
    19561 aaatatggat gctaatgcaa ttaaccaaat cgctacacaa gtgacatcaa cgaaaaatgc
    19621 attagatggt acacataatt taacgcaagc gaaacaaaca gcaacaaatg ccatcgatgg
    19681 tgctactaac ttaaataaag cgcaaaaaga tgcgttaaaa gcacaagtta caagtgcgca
    19741 acgtgttgca aatgtaacaa gtatccaaca aactgcaaat gaacttaata cagctatggg
    19801 tcaattacaa catggtattg atgatgaaaa tgcaacaaaa caaactcaaa aatatcgtga
    19861 cgctgaacaa agtaagaaaa ctgcttatga tcaagctgta gctgctgcga aagcaatttt
    19921 aaataaacaa acaggttcaa attcagataa agcagcagtt gaccgtgcat tacaacaagt
    19981 aacaagtacg aaagatgcat tgaatggtga tgcaaaactg gcagaagcga aagcggcagc
    20041 taaacaaaac ttaggcactt taaaccatat tacgaatgca caacgtactg acttagaagg
    20101 ccaaatcaat caagcgacga ctgttgatgg cgttaatact gtaaaaacaa atgccaatac
    20161 attagacggc gcaatgaata gcttacaagg ttcaatcaat gataaagatg cgacattaag
    20221 aaatcaaaat tatcttgatg cggatgaatc aaaacgaaat gcatatacgc aagctgtcac
    20281 agcggctgaa ggcattttaa ataaacaaac tggtggtaac acatctaaag cagacgttga
    20341 taatgcatta aatgcagtta caagagcgaa agcggcttta aatggtgctg acaacttaag
    20401 aaatgcgaaa acttcagcaa caaatacgat tgatggttta cctaacttaa cacaattaca
    20461 aaaagacaac ttgaagcatc aagttgaaca agcgcaaaat gtagcaggtg taaatggtgt
    20521 taaagataaa ggtaatacgt taaatactgc catgggtgca ttacgtacaa gtatccaaaa
    20581 tgataatacg acgaaaacaa gtcaaaatta tcttgatgca tctgacagca acaaaaataa
    20641 ttacaatact gctgtaaata atgcaaatgg tgttattaat gcaacgaaca atccaaatat
    20701 ggatgctaat gcgattaatg gcatggcaaa tcaagtcaat acaacaaaag cagcgttaaa
    20761 tggtgcacaa aacttagctc aagctaaaac aaatgcgacg aacacaatta acaacgcaca
    20821 tgacttaaac caaaaacaaa aagatgcatt aaaaacacaa gttaacaatg cacaacgtgt
    20881 atctgatgca aataacgttc aacacactgc aactgaattg aacagtgcga tgacagcact
    20941 taaagcagct attgctgata aagaaagaac aaaagcaagc ggtaattatg tcaatgctga
    21001 tcaagaaaaa cgtcaagcgt atgattcaaa agtgactaac gctgaaaata tcattagtgg
    21061 tacaccgaat gcgacattaa cagtcaatga cgtaaatagt gcggcatcac aagtcaatgc
    21121 ggctaaaaca gcattaaatg gtgataacaa cttacgtgta gcgaaagagc atgccaacaa
    21181 tacaattgac ggcttagcac aattgaataa tgcacaaaaa gcaaaattaa aagaacaagt
    21241 tcaaagtgca actacattag atggtgttca aactgttaaa aatagttctc aaacgttgaa
    21301 tacagcgatg aaaggcttaa gagatagtat tgcgaatgaa gcaacaatta aagcaggtca
    21361 aaactacact gacgcaagtc caaataatcg taacgagtac gacagtgcag ttactgcagc
    21421 aaaagcaatc attaatcaaa catcgaaccc aacgatggaa ccaaatacta ttacgcaagt
    21481 aacatcacaa gtgacaacta aagaacaggc attaaatggt gcgcgaaact tagctcaagc
    21541 taagacaact gcgaaaaaca acttgaataa cttaacatca attaacaatg cacaaaaaga
    21601 tgcgttaacg cgtagcattg atggtgcaac aacagtagct ggtgtaaatc aagaaactgc
    21661 aaaagcaaca gaattaaata acgcaatgca tagtttacaa aatggtatca atgatgagac
    21721 acaaacaaaa caaactcaga aatacctaga tgcagagcca agtaagaaat cagcttatga
    21781 tcaagcagta aatgcagcga aagcaatttt aacaaaagct agtggtcaaa atgtagacaa
    21841 agcagcagtt gaacaagcat tgcaaaatgt gaacagtacg aagacggcgt tgaacggtga
    21901 tgcgaaatta aatgaagcta aagcagctgc gaaacaaacg ttaggtacat taacacacat
    21961 taataatgca caacgtacag cgttagacaa tgaaattaca caagcaacaa atgttgaagg
    22021 tgttaataca gttaaagcca aagcgcaaca attagatggt gctatgggtc aattagaaac
    22081 atcaattcgt gataaagaca cgacgttaca aagtcaaaat tatcaagatg ctgatgatgc
    22141 taaacgaact gcttattctc aagcagtaaa tgcagcagca actattttaa ataaaacagc
    22201 tggcggtaat acacctaaag cagatgttga aagagcaatg caagctgtta cacaagcaaa
    22261 tactgcatta aacggtattc aaaacttaga tcgtgcgaaa caggctgcta acacagcgat
    22321 tacaaatgct tcggacttaa atacaaaaca aaaagaagca ttaaaagcac aagtaacaag
    22381 tgcaggacgt gtatctgcag caaatggtgt tgaacatact gcgactgaat taaatactgc
    22441 gatgacagct ttaaagcgtg ccattgctga taaagctgag acaaaagcta gtggtaacta
    22501 tgtcaatgct gatgcgaata aacgtcaagc atatgatgaa aaagttacag ctgccgaaaa
    22561 tatcgttagt ggtacaccaa caccaacgtt aacaccagca gatgttacaa atgcagcaac
    22621 gcaagtaacg aatgctaaga cgcagttaaa cggtaatcat aatttagaag tagcgaaaca
    22681 aaatgctaac actgcaattg atggtttaac ttctttaaat ggtccgcaaa aagcaaaact
    22741 taaagaacaa gtgggtcaag cgacgacgtt gccaaatgtt caaactgttc gtgataatgc
    22801 acaaacatta aacactgcaa tgaaaggtct acgagatagc attgcgaatg aagcaacgat
    22861 taaagcaggt caaaactaca cagatgcaag tcaaaacaaa caaactgact acaacagtgc
    22921 agtcactgca gcaaaagcaa tcattggtca aacaactagt ccatcaatga atgcgcaaga
    22981 aattaatcaa gcgaaagacc aagtgacagc taaacaacaa gcgttaaacg gtcaagaaaa
    23041 cttaagaact gcgcaaacaa atgcgaagca acatttgaac ggcttaagtg acttaactga
    23101 cgctcaaaaa gatgcagtga aacgtcaaat cgaaggtgca acgcatgtta atgaagtaac
    23161 acaagcacaa aataatgcgg atgcattaaa tacagctatg acgaacttga aaaatggtat
    23221 tcaagatcag aatacgatta agcaaggtgt taacttcact gatgccgacg aagcgaaacg
    23281 taatgcatat acaaatgcag tgacgcaagc tgaacaaatt ttaaataaag cacaaggtcc
    23341 aaatacttca aaagacggtg tcgaaactgc gttagaaaat gtacaacgtg ctaaaaacga
    23401 attgaacggt aatcaaaatg ttgcgaacgc taagacaact gcgaaaaatg cattgaataa
    23461 cctaacatca attaataatg cacaaaaaga agcattgaaa tcacaaattg aaggtgcgac
    23521 aacagttgca ggtgtaaatc aagtgtctac aacggcatct gaattaaata cagcaatgag
    23581 caacttacaa aatggtatta atgatgaagc agctacaaaa gcagctcaga aatatactga
    23641 tgcagataga gaaaaacaaa ctgcatacaa tgacgctgta acagcagcta aaacgttatt
    23701 agataaaaca gctggttcaa atgacaataa agcagctgtt gaacaagcat tacaacgtgt
    23761 gaatactgct aaaacagcat taaatggtga cgagcgatta aatgaagcga agaacacagc
    23821 taaacaacaa gtagcgacaa tgtcacactt aactgatgct caaaaagcaa acttaacatc
    23881 gcaaatcgaa agtggtacga ctgttgcagg tgttcaaggt attcaagcta atgccggtac
    23941 tttagatcaa gcaatgaatc aattaagaca aagtattgct tctaaagatg cgactaaatc
    24001 aagcgaagat tatcaagacg cgaatgcaga tttacaaaat gcatacaatg atgcggtaac
    24061 taatgctgaa ggtattatta gtgcaacgaa taaccctgaa atgaatcctg atacaattaa
    24121 ccaaaaagcg agccaagtga acagtgcgaa gtctgcattg aacggtgatg aaaaattagc
    24181 agcagcaaaa caaactgcga aatcagatat cggtcgtttg acagacttga acaatgcaca
    24241 acgaactgcg gcaaatgctg aagtggatca agcaccaaat cttgcagctg tcacagcggc
    24301 taaaaataaa gcaacatcgt taaacacagc gatgggtaat ttgaaacatg cacttgctga
    24361 aaaggataat acgaaacgta gtgtcaatta cacagatgcg gatcaaccaa aacaacaagc
    24421 gtatgatact gcggttacac aagcagaagc aattactaat gctaatggca gcaacgcgaa
    24481 tgaaacacaa gttcaagcag cactaaacca attgaatcaa gctaaaaatg acttgaatgg
    24541 tgataataaa gttgctcaag caaaagagtc agcgaaacgt gcattagctt catatagtaa
    24601 cttgaataat gcgcaatcaa ctgcagcaat tagtcaaatt gacaatgcaa cgacagtagc
    24661 aggcgtaact gctgcacaaa atactgctaa tgaattaaat acagcaatgg gtcaacttca
    24721 aaatggtata aatgaccaaa acactgttaa acaacaagtg aactttacag atgctgacca
    24781 aggtaagaaa gatgcttaca caaatgctgt tacgaatgct caaggtattt tagataaagc
    24841 acacggtcaa aatatgacga aagcacaagt tgaagctgca ttaaatcaag taacgactgc
    24901 taagaatgct ttaaacggtg acgcaaatgt aagacaagca aaatcagatg cgaaagcaaa
    24961 cttaggtaca ttaacacact taaataatgc acaaaaacaa gatttaacat cacaaatcga
    25021 aggcgcaaca acagtcaacg gtgtaaatgg tgttaaaacg aaagcacaag acttagatgg
    25081 tgcaatgcaa cgattacaat cagctatagc aaataaagat caaactaaag cgagcgaaaa
    25141 ttacatcgac gcagatccaa ctaagaaaac agcatttgat aatgctatca cacaagctga
    25201 atcttactta aataaagatc acggtgcgaa taaagataag caagctgttg aacaagcaat
    25261 tcaaagtgta acgtctactg aaaatgcttt gaacggtgac gcgaacttac aacgcgctaa
    25321 aactgaagct atacaagcta tcgataactt gacacatttg aatacaccac aaaaaacagc
    25381 attaaaacaa caagtgaacg ctgcgcaacg tgtatcaggt gtaactgatc tgaaaaatag
    25441 tgctacatca cttaataatg cgatggatca attaaaacaa gcaattgctg atcatgacac
    25501 aattgtagct agtggtaatt acactaacgc gagtcctgat aagcaaggtg cttatactga
    25561 tgcatataat gctgcgaaaa acattgtaaa tggttcgcct aatgtgatta caaatgcagc
    25621 agatgttaca gcagcaacac aacgtgttaa taatgctgaa acaggtttaa acggtgatac
    25681 aaacttagca actgcgaagc aacaagctaa agatgcatta cgtcaaatga cacatttatc
    25741 tgatgcacaa aaacaaagta ttactggtca aattgatagc gcgacacaag taactggcgt
    25801 tcaaagtgtg aaagacaacg cgacaaatct tgataatgca atgaatcaac ttcgaaatag
    25861 tattgcgaat aaagatgatg taaaagcgag tcaaccatat gttgatgcag atagagataa
    25921 acaaaatgca tacaatacag cagttacaaa tgctgaaaat atcattaatg caacgagtca
    25981 gccgacactt gatccatctg cagtaacaca agcagctaat caagtgagca ctaacaaaac
    26041 tgcgcttaat ggtgcacaaa acttagcgaa taaaaagcaa gaaacgactg ctaacatcaa
    26101 ccaattaagt catttaaata atgctcaaaa gcaagattta aatacgcaag tgacaaatgc
    26161 accaaatatt agcacagtaa atcaagtgaa aactaaagct gaacaattag atcaagcaat
    26221 ggaacgttta atcaacggaa tccaagacaa agatcaagtg aaacaaagtg ttaactttac
    26281 agatgcagat ccagaaaaac aaacagcata caacaatgcg gtaactgctg ctgaaaatat
    26341 tattaatcaa gcaaatggta caaatgcgaa ccaatcacaa gttgaagcag cactttcaac
    26401 tgtaacaact acgaaacaag cgttgaatgg tgatagaaaa gtaacagatg ctaaaaacaa
    26461 tgcaaaccaa acattatcta cgttagataa cttaaacaat gcacaaaaag gtgctgttac
    26521 tggaaacatc aatcaagcgc acactgtagc tgaagtaacg caagccattc aaaccgctca
    26581 ggaactgaat acagcgatgg gtaacttgaa aaatagcttg aatgataaag acactacact
    26641 tggcagtcaa aactttgcag atgcagatcc agagaagaaa aatgcataca atgaagcggt
    26701 tcataatgct gaaaatattt taaataaatc tacaggtacg aacgtgccta aagatcaagt
    26761 tgaagcagct atgaatcaag tgaatgctac aaaagcagcg cttaatggta ctcaaaacct
    26821 tgaaaaagct aaacaacacg caaatacagc aattgacggt ttaagccatt taacaaatgc
    26881 acaaaaagag gcattaaaac aattggtaca acaatcgact actgttgcag aagcacaagg
    26941 taatgagcaa aaagcaaaca atgttgatgc agcaatggac aaattacgtc aaagtattgc
    27001 agataatgcg acaacaaaac aaaaccaaaa ttatactgat gcaagtcaga ataaaaagga
    27061 tgcgtacaat aatgctgtca caactgcaca aggtattatt gatcaaacta caagtccaac
    27121 tttagatccg actgttatca atcaagctgc tggacaagta agcacaacta aaaatgcatt
    27181 aaatggtaat gaaaacctag aggcagcgaa acaacaagcg tcacaatcat taggttcatt
    27241 agataactta aataatgcgc aaaaacaaac agttactgat caaattaatg gcgcgcatac
    27301 tgttgatgaa gcaaatcaaa ttaagcaaaa tgcgcaaaac ttaaatacag cgatgggtaa
    27361 cttgaaacaa gcgatagctg acaaagatgc tacgaaagcg acagttaact tcactgatgc
    27421 agatcaagca aaacaacaag catataacac tgctgttaca aatgctgaaa atatcatttc
    27481 aaaagctaat ggcggcaatg caacacaagc tgaagttgaa caagcaatca aacaagttaa
    27541 tgctgcaaaa caagcattaa atggtaatgc caacgttcaa catgcaaaag acgaagcaac
    27601 agcattaatt aatagctcta atgaccttaa ccaagcacaa aaagacgcat taaaacaaca
    27661 agttcaaaat gcaactactg tagctggtgt aaacaatgtt aaacaaacag cacaagagtt
    27721 aaacaatgct atgacacaat taaaacaagg cattgcagat aaagaacaaa caaaagctga
    27781 tggtaacttt gtcaatgcag atcctgataa gcaaaatgca tataatcaag cagtagcgaa
    27841 agctgaagca ttaattagtg ctacgcctga tgttgtcgtt acacctagcg aaattactgc
    27901 agcgttaaat aaagttacgc aagctaaaaa tgatttaaat ggtaatacaa acttagcaac
    27961 ggcgaaacaa aatgttcaac atgctattga tcaattgcca aacttaaacc aagcgcaacg
    28021 tgatgaatac agcaaacaaa tcacgcaagc aacacttgta ccaaacgtca atgctattca
    28081 acaagcggcg acaacgctta atgacgcgat gacacaattg aaacaaggta ttgcgaataa
    28141 agcacaaatt aaaggtagcg agaactatca cgatgctgat actgacaagc aaacagcata
    28201 tgataatgca gtaacaaaag cagaagaatt gttaaaacaa acaacaaatc caacaatgga
    28261 tccaaataca attcaacaag cattaactaa agtgaatgac acaaatcaag cacttaacgg
    28321 taatcaaaaa ttagctgatg ccaaacaaga tgctaagaca acacttggta cactagatca
    28381 tttaaatgat gctcaaaaac aagcgctaac aactcaagtt gaacaagcac cagatattgc
    28441 aacagttaat aatgttaagc aaaatgctca aaatctgaat aatgctatga ctaacttaaa
    28501 caatgcatta caagataaaa ctgagacatt aaatagcatt aactttactg atgcagatca
    28561 agctaagaaa gatgcttata ctaatgcggt ttcacatgca gaaggtattt tatctaaagc
    28621 aaatggcagc aatgcaagtc aaactgaagt ggaacaagcg atgcaacgtg tgaacgaagc
    28681 gaaacaagca ttgaatggta atgacaatgt acaacgtgca aaagatgcag cgaaacaagt
    28741 gattacaaat gcaaatgatt taaatcaagc gcaaaaagat gcattaaaac aacaagtcga
    28801 tgctgcgcaa actgttgcaa atgtaaacac gattaagcaa acagcacaag atttaaatca
    28861 agcaatgaca caattgaaac aaggtattgc agataaagac caaactaaag caaatggtaa
    28921 ctttgtcaat gctgatactg ataagcaaaa tgcttacaac aatgcggtag cacatgctga
    28981 acaaataatt agtggtacac caaatgcaaa cgtggatcca caacaagtgg ctcaagcgtt
    29041 acaacaagtg aatcaagcta agggtgattt aaacggtaac cataacttac aagttgctaa
    29101 agacaatgca aatacagcca ttgatcagtt accaaactta aatcaaccac aaaaaacagc
    29161 attaaaagac caagtgtcgc atgcagaact tgttacaggt gttaatgcta ttaagcaaaa
    29221 tgctgatgcg ttaaataatg caatgggtac attgaaacaa caaattcaag cgaacagtca
    29281 agtaccacag tcagttgact ttacacaagc ggatcaagac aaacaacaag catataacaa
    29341 tgcggctaac caagcgcaac aaatcgcaaa tggcatacca acacctgtat tgacgcctga
    29401 tacagtaaca caagcagtga caactatgaa tcaagcgaaa gatgcattaa acggtgatga
    29461 aaaattagca caagcgaaac aagaagcttt agcaaatctt gatacgttac gcgatttaaa
    29521 tcaaccacaa cgtgatgcat tacgtaacca aatcaatcaa gcacaagcgt tagctacagt
    29581 tgaacaaact aaacaaaatg cacaaaatgt gaatacagca atgagtaact tgaaacaagg
    29641 tattgcaaac aaagatactg tcaaagcaag tgagaactat catgatgctg atgccgataa
    29701 gcaaacagca tatacaaatg cagtgtctca agcggaaggt attatcaatc aaacgacaaa
    29761 tccaacgctt aacccagatg aaataacacg tgcattaact caagtgactg atgctaaaaa
    29821 tggcttaaac ggtgaagcta aattggcaac tgaaaagcaa aatgctaaag atgccgtaag
    29881 tgggatgacg catttaaacg atgctcaaaa acaagcatta aaaggtcaaa tcgatcaatc
    29941 gcctgaaatt gctacagtga accaagttaa acaaacagca acgagcctag atcaagcaat
    30001 ggatcaatta tcacaagcta ttaatgataa agctcaaaca ttagcggacg gtaattactt
    30061 aaatgcagat cctgacaaac aaaatgcgta taaacaggca gtagcaaaag ctgaagcatt
    30121 attgaataaa caaagtggta ctaatgaagt acaagcacaa gttgaaagca tcactaatga
    30181 agtgaacgca gcgaaacaag cattaaatgg taatgacaat ttggcaaatg caaaacaaca
    30241 agcaaaacaa caattggcga acttaacaca cttaaatgat gcacaaaaac aatcatttga
    30301 aagtcaaatt acacaagcgc cacttgttac agatgtcact acgattaatc aaaaagcaca
    30361 aacgttagat catgcgatgg aattattaag aaatagtgtt gcggataatc aaacgacatt
    30421 agcgtctgaa gattatcatg atgcaactgc gcaaagacaa aatgactata accaagctgt
    30481 aacagctgct aataatatca ttaatcaaac tacatcgcct acgatgaatc cagatgatgt
    30541 taatggtgca acgacacaag tgaataatac gaaagttgca ttagatggtg atgaaaacct
    30601 tgcagcagct aaacaacaag caaacaacag acttgatcaa ttagatcatt tgaataatgc
    30661 gcaaaagcaa cagttacaat cacaaattac gcaatcatct gatattgctg cagttaatgg
    30721 tcacaaacaa acagcagaat ctttaaatac tgcgatgggt aacttaatta atgcgattgc
    30781 agatcatcaa gccgttgaac aacgtggtaa cttcatcaat gctgatactg ataaacaaac
    30841 tgcttataat acagcggtaa atgaagcagc agcaatgatt aacaaacaaa ctggtcaaaa
    30901 tgcgaaccaa acagaagtag aacaagctat tactaaagtt caaacaacac ttcaagcgtt
    30961 aaatggagac cataatttac aagttgctaa aacaaatgcg acgcaagcaa ttgatgcttt
    31021 aacaagctta aatgatcctc aaaaaacagc attaaaagac caagttacag ctgcaacttt
    31081 agtaactgca gttcatcaaa ttgaacaaaa tgcgaatacg cttaaccaag caatgcatgg
    31141 tttaagacag agcattcaag ataacgcagc aactaaagca aatagcaaat atatcaacga
    31201 agatcaacca gagcaacaaa actatgatca agctgttcaa gccgcaaata atattatcaa
    31261 tgaacaaact gcaacattag ataataatgc gattaatcaa gcagcgacaa ctgtgaatac
    31321 aacgaaagca gcattacatg gtgatgtgaa gttacaaaat gataaagatc atgctaagca
    31381 aacggttagt caattagcac atctaaacaa tgcacaaaaa catatggaag atacgttaat
    31441 tgatagtgaa acaactagaa cagcagttaa gcaagatttg actgaagcac aagcattaga
    31501 tcaacttatg gatgcattac aacaaagtat tgctgacaaa gatgcaacac gtgcgagcag
    31561 tgcatatgtc aatgcagaac cgaataaaaa acaatcctat gatgaagcag ttcaaaatgc
    31621 tgagtctatc attgcaggat taaataatcc aactatcaat aaaggtaatg tatcaagtgc
    31681 gactcaagca gtaatatcat ctaaaaatgc attagatggt gttgaacgat tagctcaaga
    31741 taagcaaact gctggaaatt ctctaaatca tttagatcaa ttaacaccag ctcaacaaca
    31801 agcgctagaa aatcaaatta ataatgcaac aactcgtggc gaagtagcac aaaaattaac
    31861 tgaagcacaa gcacttaacc aagcaatgga agctttacgt aatagcattc aagatcaaca
    31921 gcaaacggaa gcgggtagca agtttatcaa tgaagataaa ccacaaaaag atgcttacca
    31981 agcagcagtt caaaatgcaa aagatttaat taatcaaact aacaatccaa cgcttgataa
    32041 agcacaagtt gaacaattga cacaagctgt taaccaagct aaagataacc tacacggtga
    32101 tcaaaaactt gcagacgata aacaacatgc ggttactgat ttaaatcaat taaatggttt
    32161 gaataatccg caacgtcaag cacttgaaag ccaaataaac aacgcagcaa ctcgtggcga
    32221 agtagcacaa aaattagctg aagcaaaagc gcttgatcaa gcaatgcaag cattacgtaa
    32281 tagtattcaa gatcaacaac aaacagaatc tggtagcaag tttatcaatg aagataaacc
    32341 gcaaaaagat gcttaccaag cagcagttca aaatgcaaaa gatttaatta accaaacagg
    32401 taatccaaca ctcgacaaat cacaagtaga acaattgaca caagcagtaa caactgcaaa
    32461 agataatcta catggtgatc aaaaacttgc tcgtgatcaa caacaagcag taacaactgt
    32521 aaatgcattg ccaaacttaa atcatgcaca acaacaagca ttaactgatg ctataaatgc
    32581 agcgcctaca agaacagagg ttgcacaaca tgttcaaact gctactgaac ttgatcacgc
    32641 gatggaaaca ttgaaaaata aagttgatca agtgaataca gataaggctc aaccaaatta
    32701 cactgaagcg tcaactgata aaaaagaagc agtagatcaa gcgttacaag ctgcagaaag
    32761 cattacagat ccaactaatg gttcaaatgc gaataaagac gctgtagacc aagtattaac
    32821 taagcttcaa gaaaaagaaa atgagttaaa tggtaatgag agagtcgctg aagctaaaac
    32881 acaagcgaaa caaactattg accaattaac acatttaaat gctgatcaaa ttgcaactgc
    32941 taaacaaaac attgatcaag cgacgaaact tcaaccaatt gctgaattag tagatcaagc
    33001 aacgcaattg aatcaatcta tggatcaatt acaacaagca gttaatgaac atgctaacgt
    33061 tgagcaaact gtagattaca cacaagcaga ttcagataaa caaaatgctt ataaacaagc
    33121 tattgctgat gctgaaaatg tattgaaaca aaatgcgaat aagcaacaag tggatcaagc
    33181 acttcaaaat attttaaatg caaaacaagc attaaatggt gatgaacgtg tagcacttgc
    33241 taaaacaaat ggtaaacatg acatcgacca attgaatgca ttaaacaatg ctcaacaaga
    33301 tggatttaaa ggtcgcatcg atcaatcaaa cgatttaaat caaatccaac aaattgtaga
    33361 tgaggctaag gcacttaatc gtgcaatgga tcaattgtca caagaaatca ctgacaatga
    33421 aggacgcacg aaaggtagca cgaactatgt caatgcagat acacaagtca aacaagtata
    33481 tgatgaaacg gttgataaag cgaaacaagc acttgataaa tcgactggtc aaaacttaac
    33541 tgcaaaacaa gttatcaaat taaatgatgc agtcactgca gctaagaaag cattaaatgg
    33601 tgaagaaaga cttaataatc gtaaagctga agcattacaa agattggatc aattaacaca
    33661 tctaaacaat gctcaaagac aattagcaat ccaacaaatt aataatgctg aaacgctaaa
    33721 taaagcatct cgagcaatta atagagcaac taaattagat aatgcaatgg gtgcagtaca
    33781 acaatatatt gacgaacagc accttggtgt tatcagcagc acaaattaca tcaatgcaga
    33841 tgacaatttg aaagcaaatt atgataatgc aattgcgaat gcagcacatg agttagataa
    33901 agtgcaaggt aatgcaattg caaaagctga agcagagcaa ttgaaacaaa atattatcga
    33961 tgctcaaaat gcattaaatg gagaccaaaa ccttgcaaat gccaaagata aagcaaatgc
    34021 gtttgttaat tcgttaaatg gattaaatca acagcaacaa gatcttgcac ataaagcaat
    34081 taacaatgcc gatactgtat cagatgtaac agatattgtt aataatcaaa ttgacttaaa
    34141 tgatgcaatg gaaacattga aacatttagt tgacaatgaa attccaaatg cagagcaaac
    34201 tgtcaattac caaaacgctg acgataatgc taaaacaaac ttcgatgatg ccaaacgtct
    34261 agcaaataca ttgctaaata gtgataacac aaatgtgaat gatatcaatg gcgcaatcca
    34321 agcagtcaat gatgcaatcc ataatcttaa tggtgatcaa cgactacaag atgctaaaga
    34381 caaggcaatt caatctatta atcaagcttt agctaataag ctaaaagaaa tcgaagcttc
    34441 aaatgcgacg gatcaagaca agcttattgc gaaaaataaa gcagaagaat tggcaaacag
    34501 catcatcaac aacattaata aagcaacaag taatcaggct gtatctcaag ttcaaacagc
    34561 aggcaaccac gcgattgaac aagtgcatgc caatgaaata ccaaaagcaa aaattgatgc
    34621 caataaagac gttgataagc aagttcaagc attaattgac gaaattgatc gaaatccaaa
    34681 tctaacagat aaggaaaaac aagcacttaa agatcgtatt aatcaaatac ttcaacaagg
    34741 tcataacggc attaacaatg cgatgactaa agaagaaatt gaacaagcca aagcacaact
    34801 tgcgcaagca ttacaagaca tcaaagattt agtgaaagct aaagaagatg cgaaacaaga
    34861 tgttgataaa caagttcaag ctttaattga cgaaatcgat caaaatccaa atctaacaga
    34921 taaggaaaaa caagcactta aatatcgaat taatcaaata cttcaacaag gtcataacga
    34981 cattaacaat gcgctgacta aagaagaaat tgagcaggca aaagcacaac ttgcacaagc
    35041 attgcaagac atcaaagatt tagtgaaagc taaagaagat gcgaaaaatg caataaaagc
    35101 cttagctaat gcgaagcgtg atcaaatcaa ttcaaatcca gatttaacac ctgagcaaaa
    35161 agcaaaagcg ctcaaagaaa ttgacgaagc tgaaaaacga gcactacaaa acgttgagaa
    35221 tgctcaaact atagatcaat taaatcgagg attaaactta ggtttagatg acattagaaa
    35281 tacacatgta tgggaggttg atgaacaacc tgctgtaaat gaaatttttg aagcaacacc
    35341 tgagcaaatc ctagttaatg gtgaactcat tgtacatcgt gatgacatca ttacagaaca
    35401 agatattctt gcacacataa acttaattga tcagctttca gcagaagtca tcgatacacc
    35461 atcaactgca acgatttctg atagcttaac agcaaaagtt gaagttacat tgcttgatgg
    35521 atcaaaagtg attgttaatg ttcctgtaaa agttgtagaa aaagaattgt cagtagtcaa
    35581 acaacaggca attgaatcaa tcgaaaatgc ggcacaacaa aagattaatg aaatcaataa
    35641 tagtgtgaca ttaacactgg aacaaaaaga agctgcaatt gcagaagtta ataagcttaa
    35701 acaacaagca attgatcatg ttaacaatgc acctgatgtt cattcagttg aagaaattca
    35761 acaacaagaa caagcgcata ttgaacaatt taatccagaa caatttacga ttgaacaagc
    35821 aaaatcaaat gcaattaaat cgattgaaga tgcaattcaa catatgattg atgaaatcaa
    35881 agctcgtact gatctaacag ataaagagaa gcaagaagct attgctaagt taaatcaatt
    35941 aaaagaacaa gcaattcaag cgattcaacg tgcgcaaagc atcgatgaaa taagtgagca
    36001 attggaacaa tttaaagctc aaatgaaagc agctaatcca acagcaaaag aactagctaa
    36061 acgcaagcaa gaagctatta gtagaattaa agacttttca aatgaaaaaa taaatagtat
    36121 tcgaaatagt gaaattggca cagctgatga aaaacaagca gcaatgaatc aaattaacga
    36181 aattgtgctt gaaacaatta gagatattaa taatgcgcat acattacagc aagttgaggc
    36241 tgcattgaac aatggtattg ctcgaatttc agcagtacaa attgtaacat ctgatcgtgc
    36301 taaacaatcg tcaagtactg gaaatgaatc taatagccat ttaacaattg gttatggaac
    36361 tgcaaatcat ccatttaaca gttcgactat tggacataaa aagaaacttg atgaagatga
    36421 tgacattgat ccacttcata tgcgtcactt tagtaataat ttcggtaatg ttattaaaaa
    36481 cgctattggt gtggtgggta tctctggttt actagctagt ttctggttct tcattgccaa
    36541 acgtcgtcgt aaagaagatg aagaggaaga attagaaata agagataata ataaagattc
    36601 aataaaagag actttagacg atacaaaaca tttaccactt ttatttgcga aacgtcgcag
    36661 aaaagaagat gaagaagatg ttactgttga agaaaaagat tcgctaaata atggcgagtc
    36721 actcgataaa gttaaacata cgccgttctt cttaccaaaa cgtcgtcgta aagaagatga
    36781 agaagatgtg gaagttacaa atgaaaacac agatgaaaaa gtgttgaaag ataacgaaca
    36841 ttcaccactc ttattcgcaa aacgacgcaa agataaagag gaagatgttg aaacaacaac
    36901 tagtattgaa tctaaagatg aggacgttcc tttattattg gctaaaaaga aaaatcaaaa
    36961 agataaccaa tccaaagaca aaaagtcagc atcaaaaaat acttctaaaa aggtagcagc
    37021 taaaaagaag aaaaagaaag ctaagaaaaa taaaaaataa tttgtttctt tgataaatag
    37081 aggagcaccg attgacatca catcagtcgg tgctcctttt atttattctt tttaattaat
    37141 ttatacaatg cctgttgagc gtgttgattc gcttctttgt tttgttctct cggtatccat
    37201 ttaacaaata ataaatcaaa atctttttca aatatttcta tttgatcaaa ataaggtttg
    37261 aaatttgcgt ttttcacata accagcttca atgctatctg caattagctt tgagtctgta
    37321 tataatagtg cgttttgaac atttaattca cgtgcatgtt ctagtgcata aatacatgca
    37381 gcccattctg cagtgtggtt atccatttcg cctaactcat gtgtatatgt ataatgctgc
    37441 tcatcttctt tgattacaat ggcacatgta cttatgcctg gatttccttt cgtcgcagca
    37501 tcaaaattta ttttcgccat aataaaccta ctttctattc aatacttagt taaagttact
    37561 attactgtaa tacaaaatat gttgggtaat ccattaaaaa acacgcatca cttaaataag
    37621 taacacgtgt ttaaaatact cgctgattca aagatgattt tctaatacgt agtactgtaa
    37681 tatacttcct aaaaaaatca tcttcaggct gggacataaa tcaatgttct atgctctacg
    37741 atgttatatt ggcagtagtt gactgaacga aaatgcgctt gtaacaagct tttttcaatt
    37801 ctagtcaggg gccccaacac agagaatttc gaaaagaaat tctacaggca atgcgagttg
    37861 gggtgtgggt cccaacacag aagatgacga aaagtcagct tacaataatg tgcaagtttg
    37921 ggatgggccc caacaaagag aaattggatt cccaatttct acagacaatg caagttgggg
    37981 tgggacgacg aaataaattt tgcgaaaata ttatttctgt cccactccct taaaacttat
    38041 tcttttgtgt agtaagtgcg ttaatagcct tgatctaact tatcaatctt acctttacga
    38101 taaaatgatt tagcaatata tccaaatggt acattgaaaa ctgttgaagc taattttaat
    38161 acgtacgttg taataaatat ttcaaataca actgtaccag gtaaacttcc gataaatgcg
    38221 atagctacaa ataaagctgt atcaattatt gagcttaaaa atgtactacc atatgcacgg
    38281 atgaaaaacg ttttatcaga actaaatact tttttaatta gtgaaaagat aaatacatca
    38341 atatgttgac caataatata tgcgacgatt gagcctaaag caatgcgtgg cacaacatca
    38401 aagattgcgt gtaatgcttt ttgtgccata tcttctggtg caggaataaa atgtaatgac
    38461 aattgcataa caataatcat aattaatgtt gatgaaaagc ctaaccaaac tgctcttttt
    38521 gcaactctac gcccataaat atcgtttaat atatctgttg ctaaataaat agaagcaaac
    38581 atgacattac ctaaagttgc tgaaatacca aagatttcta cagttttaat cacttgtatg
    38641 ttggcaatga ttgtgccaat tgcaacccat gcaattaaac cttgtttacc aaaaaagcga
    38701 tacataagta ccataagcac gaacgttgca ataaacgtaa ctagtcctaa aatttcatta
    38761 tacatattaa aatgtcctcc taaat
//
LOCUS       DAMQWL010000011        38756 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.011, whole genome shotgun sequence.
ACCESSION   DAMQWL010000011 DAMQWL010000000
VERSION     DAMQWL010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 38756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38756
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.011"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(219..527)
                     /locus_tag="PF788_000546"
     CDS             complement(219..527)
                     /locus_tag="PF788_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002465312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HDG6302825.1"
                     /translation="MEEALKDSILGALEMVIDPELGIDIVNLGLVYKVNVDDEGVCTV
                     DMTLTSMGCPMGPQIIDQVKTVLAEIPEIQDTEVNIVWSPPWTKDMMSRYAKIALGVS
                     "
     gene            641..1465
                     /locus_tag="PF788_000547"
     CDS             641..1465
                     /locus_tag="PF788_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDG6302826.1"
                     /translation="MQPHLICLDLDGTLLNDNKEISSYTKQVLNELQQRGHQIMIATG
                     RPYRASQMYYHELNLTTPIVNFNGAYVHHPKDKNFKTCHEILDLGIAQNIIQGLQQYQ
                     VSNIIAEVKDYVFINNHDPRLFEGFSMGNPRIQTGNLLVHLKESPTSILIEAEESKIP
                     EIKNMLTHFYADHIEHRRWGAPFPVIEIVKLGINKARGIEQVRQFLNIDRNNIIAFGD
                     EDNDIEMIEYARHGVAMENGLQELKDVANNITFNNNEDGIGRYLNDFFNLNIRYYC"
     gene            1517..2833
                     /locus_tag="PF788_000548"
     CDS             1517..2833
                     /locus_tag="PF788_000548"
                     /EC_number="1.8.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-disulfide reductase"
                     /protein_id="HDG6302827.1"
                     /translation="MPKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA
                     LPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQF
                     EESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVS
                     LEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN
                     EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIG
                     DIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFA
                     SVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGA
                     DKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGYKAK"
     gene            complement(3004..3393)
                     /locus_tag="PF788_000549"
     CDS             complement(3004..3393)
                     /locus_tag="PF788_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YisL family protein"
                     /protein_id="HDG6302828.1"
                     /translation="MLHLHILSWVLAIILFIATYLNISKNQGRSPFFKPLHMILRLFM
                     LLTLISGFWILIQSFMNGGANHMLLTLKMLCGVAVVGLMEVSIAKRKRHEQSHTMFWI
                     TIALIIITMVLGVILPLGPISKLFGIG"
     gene            complement(3722..4624)
                     /locus_tag="PF788_000550"
     CDS             complement(3722..4624)
                     /locus_tag="PF788_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HDG6302829.1"
                     /translation="MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTL
                     LAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNY
                     KDHANELNHEVEKLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKI
                     PKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENV
                     NIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPK
                     FLQPGDEVKVTIDNIGTLTTYIAK"
     gene            complement(4790..8443)
                     /gene="addA"
                     /locus_tag="PF788_000551"
     CDS             complement(4790..8443)
                     /gene="addA"
                     /locus_tag="PF788_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HDG6302830.1"
                     /translation="MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVER
                     IIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQ
                     AQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAF
                     IELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPKNWLDQLVTPYEEEAQQAQLIQLLT
                     DLSKVFITAAYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGH
                     EFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQ
                     QLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYR
                     QHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIE
                     KYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYG
                     APYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRS
                     ATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPL
                     QDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMF
                     LSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFEN
                     SSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLS
                     KDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVY
                     VALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQ
                     SASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG
                     NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFST
                     YERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADA
                     KKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMID
                     LIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVK
                     GYLYFFKFGTLQL"
     gene            complement(8444..11920)
                     /gene="addB"
                     /locus_tag="PF788_000552"
     CDS             complement(8444..11920)
                     /gene="addB"
                     /locus_tag="PF788_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddB"
                     /protein_id="HDG6302831.1"
                     /translation="MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQST
                     FQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQE
                     QQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDI
                     ALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKG
                     LIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFNQLYRFNN
                     QDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIA
                     ILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLR
                     LLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTE
                     DERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERD
                     ELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMI
                     PQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVE
                     LSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLE
                     ITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQ
                     GLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNE
                     RTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLL
                     NSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLT
                     TTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYM
                     DIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFKLSGLV
                     NADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFI
                     ETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQ
                     NININDEFGGEQ"
     gene            complement(12080..12655)
                     /gene="lepB"
                     /locus_tag="PF788_000553"
     CDS             complement(12080..12655)
                     /gene="lepB"
                     /locus_tag="PF788_000553"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002465318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDG6302832.1"
                     /translation="MKKEILEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDG
                     ERVAVNIVGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQD
                     EPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGL
                     IDEDQIVGKVSFRFWPFSEFKHNFNPENTKN"
     gene            complement(12671..13195)
                     /gene="lepB"
                     /locus_tag="PF788_000554"
     CDS             complement(12671..13195)
                     /gene="lepB"
                     /locus_tag="PF788_000554"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDG6302833.1"
                     /translation="MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGD
                     RVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDAS
                     YAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDQDNNKHDSRQFGLIDKKDIIGNVSL
                     RYYPFSKWTVQFKS"
     gene            complement(13200..13775)
                     /locus_tag="PF788_000555"
     CDS             complement(13200..13775)
                     /locus_tag="PF788_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HDG6302834.1"
                     /translation="MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINI
                     QAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLI
                     PLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTH
                     PLRGILMLVVLVVFWIVGKKLEQHFMGSKKE"
     gene            complement(14100..15431)
                     /locus_tag="PF788_000556"
     CDS             complement(14100..15431)
                     /locus_tag="PF788_000556"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDG6302835.1"
                     /translation="MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDF
                     LGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNS
                     NEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEER
                     YGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAG
                     INIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFN
                     EWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDIT
                     IEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV
                     YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL"
     gene            15782..16987
                     /locus_tag="PF788_000557"
     CDS             15782..16987
                     /locus_tag="PF788_000557"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDG6302836.1"
                     /translation="MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDI
                     VYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVE
                     IAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKH
                     NIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIIL
                     TFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAE
                     VILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVS
                     GDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAM
                     LHGGYSNEQ"
     gene            16977..18356
                     /gene="argH"
                     /locus_tag="PF788_000558"
     CDS             16977..18356
                     /gene="argH"
                     /locus_tag="PF788_000558"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDG6302837.1"
                     /translation="MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHAT
                     MLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGG
                     KLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPSYTHLQR
                     AQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLN
                     FGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFST
                     GSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVH
                     TIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKI
                     VLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQL
                     DVAKQLLSQ"
     gene            18598..19527
                     /locus_tag="PF788_000559"
     CDS             18598..19527
                     /locus_tag="PF788_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDG6302838.1"
                     /translation="MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQ
                     WHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMH
                     DETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERY
                     GPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHR
                     QNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHP
                     YTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK"
     gene            complement(20030..21274)
                     /locus_tag="PF788_000560"
     CDS             complement(20030..21274)
                     /locus_tag="PF788_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HDG6302839.1"
                     /translation="MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIP
                     VRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPY
                     GGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDE
                     YSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQG
                     FGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETI
                     SNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILL
                     VPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVDEKLREKLEAAFDTIYELSQNRKIDM
                     RLAAYIIGIKRTAEAARYRGWA"
     gene            complement(21383..22573)
                     /locus_tag="PF788_000561"
     CDS             complement(21383..22573)
                     /locus_tag="PF788_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDG6302840.1"
                     /translation="MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMD
                     MLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALP
                     MNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRG
                     YGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDE
                     HNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDV
                     FTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEV
                     RGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIR
                     HVFQ"
     gene            complement(22881..24008)
                     /locus_tag="PF788_000562"
     CDS             complement(22881..24008)
                     /locus_tag="PF788_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDG6302841.1"
                     /translation="MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVE
                     LPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSNIEGLKRLATAMKKNGAKAL
                     VQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEAT
                     RRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPVAVIEEVLKAKEAYG
                     NKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAG
                     QERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIK
                     DGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK"
     gene            complement(24370..24747)
                     /locus_tag="PF788_000563"
     CDS             complement(24370..24747)
                     /locus_tag="PF788_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001067296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HDG6302842.1"
                     /translation="MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYV
                     HNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKY
                     GFQTLKERLPIWIKQSKRAIRND"
     gene            complement(25163..25756)
                     /locus_tag="PF788_000564"
     CDS             complement(25163..25756)
                     /locus_tag="PF788_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDG6302843.1"
                     /translation="MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFV
                     THAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALS
                     MANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVF
                     GQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE"
     gene            25820..26203
                     /locus_tag="PF788_000565"
     CDS             25820..26203
                     /locus_tag="PF788_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase-associated lipoprotein B"
                     /protein_id="HDG6302844.1"
                     /translation="MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNP
                     TETEGVFFHDRKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTK
                     HAEMSLASLARLKEDYSLQYKENFK"
     gene            26334..28739
                     /gene="mnhA1"
                     /locus_tag="PF788_000566"
     CDS             26334..28739
                     /gene="mnhA1"
                     /locus_tag="PF788_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh1 subunit A"
                     /protein_id="HDG6302845.1"
                     /translation="MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIY
                     MLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYL
                     SKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIY
                     GAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIG
                     AFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTV
                     TLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYA
                     AAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITAL
                     SMAGVPPFNGFLSKESFLETTFTASQANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFI
                     MHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSIN
                     HTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNR
                     SANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIF
                     EVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESIS
                     TALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFY
                     QEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVK
                     NHE"
     gene            28732..29160
                     /gene="mnhB1"
                     /locus_tag="PF788_000567"
     CDS             28732..29160
                     /gene="mnhB1"
                     /locus_tag="PF788_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh1 subunit B"
                     /protein_id="HDG6302846.1"
                     /translation="MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGL
                     LFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFD
                     IPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE"
     gene            29160..29501
                     /gene="mnhC1"
                     /locus_tag="PF788_000568"
     CDS             29160..29501
                     /gene="mnhC1"
                     /locus_tag="PF788_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000402803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh1 subunit C"
                     /protein_id="HDG6302847.1"
                     /translation="MEIIMIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLI
                     TMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDN
                     VESMKGVPEDD"
     gene            29494..30990
                     /gene="mnhD1"
                     /locus_tag="PF788_000569"
     CDS             29494..30990
                     /gene="mnhD1"
                     /locus_tag="PF788_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh1 subunit D"
                     /protein_id="HDG6302848.1"
                     /translation="MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLV
                     AAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTI
                     GIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVYFEVFLMSSYFLLVIGSTKIQLQE
                     TIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIF
                     VFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSH
                     YVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGSIYYT
                     LHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSG
                     FYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVK
                     YLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK"
     gene            30992..31471
                     /gene="mnhE1"
                     /locus_tag="PF788_000570"
     CDS             30992..31471
                     /gene="mnhE1"
                     /locus_tag="PF788_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh1 subunit E"
                     /protein_id="HDG6302849.1"
                     /translation="MAVQLVLNFIIAVFWLFVTNSYTTNNFVLGFIFGLVLVYLLHRV
                     LPGRFYVITLYRIIKLVIIFLIELIKANFDVLKIIIKPSIKNEPGFFVYHTDLKKDWQ
                     IVLLSNLITLTPGTVVLGVSDDRTKIYIHAIDFSTKEQEVESIKTSLEKIVREVGEI"
     gene            31471..31764
                     /gene="mnhF1"
                     /locus_tag="PF788_000571"
     CDS             31471..31764
                     /gene="mnhF1"
                     /locus_tag="PF788_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh1 subunit F"
                     /protein_id="HDG6302850.1"
                     /translation="MNHNVIIVIALIIVVISMLAMLIRVVLGPSLADRVVALDAIGLQ
                     LMAVIALFSILLNIKYMIVVIMMIGILAFLGTAVFSKFMDKGKVIEHDQNHTD"
     gene            31742..32098
                     /gene="mnhG1"
                     /locus_tag="PF788_000572"
     CDS             31742..32098
                     /gene="mnhG1"
                     /locus_tag="PF788_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh1 subunit G"
                     /protein_id="HDG6302851.1"
                     /translation="MIKIILISLALIFVIIGALISALAAIGLLRLEDVYSRAHAAGKA
                     STLGAMSLLFGTFLYFIATQGFVNMQLIVAIIFVLITGPLSSHMIMKAAYNIKTPYTK
                     KTKVDEISEDLKDTKL"
     gene            32347..33501
                     /locus_tag="PF788_000573"
     CDS             32347..33501
                     /locus_tag="PF788_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HDG6302852.1"
                     /translation="MHWTIIGGGIQGTAIAQKLLSSGLTTDRLTIIDPHETFCQRFNS
                     YTNRIEMPYLRSPIVHHVHPQPFHLKQFAKQHQYTNAFYGPYQRPELTMFMDHIAHAS
                     KQYQLEDCLVQGLVQTLDKQEDKWHIKLEDGQIITTDCVVIAIGSTNIPFMPDILKDK
                     QNVNHIFEKELDQVVYDKTDHIVGSGITAAHLALKLLNHDNDKKIHLWLNKDIEIHDF
                     DADPGWLGPKNMSSFLSTKSMPERNAIVQRERHKGSMPHELYLRLKKHIKNGRINVHK
                     TPITQISGGVINTENDSVPYQQIMVATGFEQDFMSQPLIKQLIQNYDAPINECNYPVI
                     SEKLEWIPNLFVAGCFADLELGPFGRNVMGGRKAAERIEQAFLKLQQYSA"
     gene            complement(33557..33931)
                     /locus_tag="PF788_000574"
     CDS             complement(33557..33931)
                     /locus_tag="PF788_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HDG6302853.1"
                     /translation="MTHLLETFEMSIDHQEDGLVVISMPVTDKVKQPFGYLHGGASIA
                     LGETACSLGSANLIDTTKFIPLGLEMNANHIHSAKDGRVTATAEIIHRGKSTHVWDIK
                     IKNDKEQLITVMRGTVAIKPLK"
     gene            complement(33950..35266)
                     /locus_tag="PF788_000575"
     CDS             complement(33950..35266)
                     /locus_tag="PF788_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDG6302854.1"
                     /translation="MINAVVIAVILMIVLCLCRLNVVISLFISALVGGLISGMSIEKV
                     INVFGKNIVDGAEVALSYALLGGFAALISYSGITDYLVGKIINAIHAENSRWSRVKVK
                     VTIIIALLAMSIMSQNLIPVHIAFIPIVIPPLLSLFNDLKIDRRLIGLIIGFGLCFPY
                     VLLPYGFGQIFQQIIQSGFAKANHPIEFNMIWKAMLIPSMGYIVGLLIGLYVYRKPRE
                     YETRKISDSDNVTELKPYILIVTIVAILATFLVQTFTDSMIFGALAGVLVFFISRAYN
                     WYELDAKFVEGIKIMAYIGVVILTANGFAGVMNATGDIDELVKTLTSITGDNKLFSII
                     MMYVIGLIVTLGIGSSFATIPIIASLFIPFGASIGLDTMALIALIGTASALGDSGSPA
                     SDSTLGPTAGLNVDGQHDHIRDTCVPNFLFYNIPLMIFGTIAAMVL"
     gene            complement(35677..37152)
                     /locus_tag="PF788_000576"
     CDS             complement(35677..37152)
                     /locus_tag="PF788_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family metallopeptidase"
                     /protein_id="HDG6302855.1"
                     /translation="MNFKLNNTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERL
                     KHQHIIGSKVGKIYTTAFDVQDQTYRLITVGLGNLKTRSYQDMLKIWGHLFQYIKSEH
                     IEDTYLLMDSFISKYDQLSDVLMACGIQSERATYEFDHYKSSKKAPFKTNLNLISESL
                     IELDFIHEGISIGQSINLARDFSNMPPNVLTPQTFAEDIVNHFKNTKVKVDVKDYDTL
                     VSEGFGLLQAVGKGSKHKPRLVTITYNGKDKDEAPIALVGKGITYDSGGYSIKTKNGM
                     ATMKFDMCGAANVVGIIEAASRLQLPVNIVGVLACAENMINEASMKPDDVFTALSGET
                     VEVMNTDAEGRLVLADAVFYANQYQPSVIMDFATLTGAAIVALGDDKAAAFESNSKVI
                     LNDILQISSEVDEMVFELPITATERASIKHSDIADLVNHTNGQGKALFAASFVTHFSG
                     QTPHIHFDIAGPATTNKASYNGPKGPTGFMIPTIVQWLKQQ"
     gene            complement(37283..38491)
                     /locus_tag="PF788_000577"
     CDS             complement(37283..38491)
                     /locus_tag="PF788_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDG6302856.1"
                     /translation="MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYH
                     YEATWLHEASAGTLNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDF
                     DILVVALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLS
                     ILVGGAGFTGVEFLGELTDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHA
                     VSYLEDRGVEFKIATPIVACNEKGFVVEVDGEKQQLNAGTSVWAAGVRGSKLMEESFE
                     GVKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAKNIK
                     RILNGESTEEFEYVDRGTVCSLGSHDGVGMVFGKPIAGKKAAFMKKVIDTRAVFKIGG
                     IGLAFKKGKF"
BASE COUNT        12503 a         6936 c         5844 g        13473 t
ORIGIN      
        1 gtcttaattc atattttttg aaacaagtta gatataaatt ttcaaaataa aatcagaaac
       61 tagaacataa ataaggctcc cttcaaaatt ttcatttttc aatgtctact ttgaagggag
      121 cttattcaca atgaattata ctctacaatg ttatattgac tgcgggccca aacacagaga
      181 atttcgaaaa gaaattctac aggcaatgca agtttatgtt agctcacacc aagtgcaatc
      241 ttagcgtaac gtgacatcat atcttttgtc caaggtggac tccatacgat attcacttca
      301 gtatcctgaa tttcaggaat ctctgctaat actgttttaa cttgatcaat aatttgaggt
      361 cccattggac atcccattga tgttaaagtc atatcaactg tacatacgcc ttcatcatca
      421 acattcactt tgtatactaa acccaaatta acgatatcaa ttcctaattc agggtcaatt
      481 accatttcta atgcacctaa gatactatct ttcaatgcct cttccatcca tatcacctct
      541 ttaatgtcat attattcata atatatcaaa tatccgacaa aacgccaata aaatgctatg
      601 atgtatctat atgaactaag caacttatga ggagagagat atgcaaccac atttaatatg
      661 tctagactta gacggaacat tattaaacga taacaaagaa atttcatcat atactaaaca
      721 agtattaaat gaattacaac aacgtggaca ccaaattatg attgcgactg gcagacctta
      781 tcgtgcaagt caaatgtatt atcatgaatt aaatttaacg acaccaattg ttaattttaa
      841 tggcgcttac gtacatcacc ctaaagataa aaacttcaaa acttgccatg aaattttaga
      901 tttaggcatc gcacaaaaca ttattcaagg attacaacaa tatcaagtat cgaatattat
      961 agcagaagtg aaagattatg ttttcattaa caatcatgat ccaagattat ttgaaggttt
     1021 ttcaatgggt aatccaagaa ttcaaactgg taatttactt gtccacttga aagaatcccc
     1081 tacctcaatt ttaattgaag ccgaagaaag taaaatacct gaaatcaaaa atatgcttac
     1141 tcatttttat gccgatcata ttgagcatcg acgctggggc gcaccattcc ctgtcattga
     1201 aattgtaaaa cttggtatta ataaagcaag aggcattgag caagttagac aatttttaaa
     1261 tattgaccga aataatatta ttgcattcgg tgatgaagat aatgatattg aaatgattga
     1321 gtacgcgcgt cacggtgttg ctatggaaaa tggtttgcaa gaacttaaag atgtagcgaa
     1381 caatattaca ttcaacaata atgaagatgg cattggtcga tatttgaatg atttctttaa
     1441 tttaaatatt agatattact gttaatttat aactaatcat tttataatat tttaaaacaa
     1501 taggaggtaa gttacgatgc ccaaaatagt cgtagtcgga gcagtcgctg gcggtgcaac
     1561 atgtgccagc caaattcgac gtttagataa agaaagtgac attattattt ttgaaaaaga
     1621 tcgtgatatg agctttgcta attgtgcatt gccttatgtc attggcgaag ttgttgaaga
     1681 tagaagatat gctttagcgt atacacctga aaaattttat gatagaaagc aaattacagt
     1741 aaaaacttat catgaagtta ttgcaatcaa tgatgaaaga caaactgtat ctgtattaaa
     1801 tagaaagaca aacgaacaat ttgaagaatc ttacgataaa ctcattttaa gccctggtgc
     1861 aagtgcaaat agccttggct ttgaaagtga tattacattt acacttagaa atttagaaga
     1921 cactgatgct atcgatcaat tcatcaaagc aaatcaagtt gataaagtat tggttgtagg
     1981 tgcaggttat gtttcattag aagttcttga aaatctttat gaacgtggtt tacaccctac
     2041 tttaattcat cgatctgata agataaataa attaatggat gccgacatga atcaacctat
     2101 acttgatgaa ttagataagc gggagattcc ataccgttta aatgaggaaa ttaatgctat
     2161 caatggaaat gaaattacat ttaaatcagg aaaagttgaa cattacgata tgattattga
     2221 aggtgtcggt actcacccca attcaaaatt tatcgaaagt tcaaatatca aacttgatcg
     2281 aaaaggtttc ataccggtaa acgataaatt tgaaacaaat gttccaaaca tttatgcaat
     2341 aggcgatatt gcaacatcac attatcgaca tgtcgatcta ccggctagtg ttcctttagc
     2401 ttggggcgct caccgtgcag caagtattgt tgccgaacaa attgctggaa atgacactat
     2461 tgaattcaaa ggcttcttag gcaacaatat tgtgaagttc tttgattata catttgcgag
     2521 tgtcggcgtt aaaccaaacg aactaaagca atttgactat aaaatggtag aagtcactca
     2581 aggtgcacac gcgaattatt acccaggaaa ttccccttta cacttaagag tatattatga
     2641 cacttcaaac cgtcagattt taagagcagc tgcagtagga aaagaaggtg cagataaacg
     2701 tattgatgta ctatcgatgg caatgatgaa ccagctaact gtagatgagt taactgagtt
     2761 tgaagtggct tatgcaccac catatagcca ccctaaagat ttaatcaata tgattggtta
     2821 caaagctaaa taaatgaatc atgcgattca atctaatctt aattgtctag gttagaatta
     2881 tgttggactg gtactactat ccagtccatt ttttatgttt aacattttta gaatcaaaaa
     2941 agacataagg tcttggacta ataattgtcc atgccttatg tcatatacta tatgtcttat
     3001 caattagcca ataccgaata attttgatat aggccctaac ggtagaatga cacctaatac
     3061 cattgtgatg ataattaatg caattgttat ccaaaacatt gtgtgacttt gttcatgtct
     3121 ctttctttta gcaatcgaca cttccatcaa tccaactact gcaacaccac acagcatttt
     3181 caatgtaagc aacatatgat ttgccccgcc attcataaat gactgaatta atatccaaaa
     3241 tcctgaaatt aacgtcaaca gcataaataa gcgtaaaatc atgtgcaacg gtttgaaaaa
     3301 tggtgatctg ccttgatttt ttgaaatgtt taagtatgta gcgataaata aaataatcgc
     3361 taatacccaa cttaatatat gtaaatgtaa catactgatt ccccccactt taattattta
     3421 tattattaaa ttaaagcttc ttgggattaa tacccacttg cttgtaattt aatcatgatt
     3481 tgattataca cgaatatata ttctaccaca cttctatatt tgagaggaag aacatgacat
     3541 tttattcctt attagaatat tgtgaatctg ctgtaaaata atcaactact tcttaatatc
     3601 aatatttcac tttcatctca aaatggtaac attataaata atttatcttt aacacctttt
     3661 tagaaaagca agaaaaaact aaccaatcta tataaagact ggttagcttt ttaaatgata
     3721 attatttagc gatataagtt gtcagcgttc caatattatc aatagtcact ttaacttcat
     3781 cacctggttg taaaaattta ggtggttgca tacctgcacc aacgcctgct ggtgtaccag
     3841 ttgcaataat atctcccgga tgtagtgcaa catattttga aatttcttct attaattcat
     3901 caattttaag aatcatttcg ccagtgttac catcttgtct aatttcattg ttaacttttg
     3961 taacaatatt tacattttca ggtaatggta gttcgtcttt agtaacgata taaggaccca
     4021 ttgggcaacc gccagttaaa ctttttgata aaaatgcttg atcttgttca ctttgtgctt
     4081 tgcgatcagt gatatcgtta ataattgtat agccgtaaac ataatctaaa gctaatgctt
     4141 ttggaatctt ttcaccagac ttaccaataa caatacctaa ttcaccttca taatctaatt
     4201 gatcagtaat atctttatga tttggaattg ttgcattatc tcctgttaaa gatgacgctg
     4261 cttttgtaaa tacatataat ttttccactt catgatttaa ttcgttcgca tgatctttgt
     4321 aatttctacc aaaagcaatc acattattcg gaggtgttac tggtggtaaa aattcaatgt
     4381 cattaaatga aattttatag tcttcagctt tgccgctatc ttctgctgct acaactgctt
     4441 tacgtacttg ttcttgaaaa tctaaagtat gattttgttg taaaccagct aacaatgttt
     4501 taggatggaa atctccttct gcaaagtcag caaatacttg tgttaaatcc catacagcat
     4561 cttcgcgttt tactttaacg ccatatgaag ttttgtcatt atacttgaat gataagaatt
     4621 tcattcattc tcaactcctc atctttatct taattcacat tataactttt ttcgttatca
     4681 aataacaaat aaataagtaa gacaattttg aaaatgagtt gtgttcattc tgctacaagg
     4741 actttgcact taatcgaaat tattttttat tcttttgaaa atcaaaatac tatagttgca
     4801 atgtaccaaa tttgaagaag tataaataac ctttaacttc tttattaaga atcgtttgaa
     4861 gcgtattttg ataatatttc atctgtatct tatatttatt ttttaattgt gtaccaattt
     4921 cttcatctgt catcccacgg cgacgattaa atgcatcggt tttatagtct acaaaataat
     4981 gcacaccatc tttaacaaag attaagtcaa tcataccttg aataattgag acgtcttcgt
     5041 ctccttgtgg caattggtca actaatgctt ggttaactac aaacggtaat tcacgataaa
     5101 cttgctctgc ttcagcaata atcgaatata actcactatt gataaatgtc attatttcat
     5161 ccatacggat atcttttttc gcatctgctt cgataatatg tttatcgatt aatccatcga
     5221 tatactgatg taactcaact tcagatatgc gttctttttt gaatggtaaa tgttgcatca
     5281 ctgtatgcat taacgtacca atttcattcg cttttcgttt accttgttca cttagaaatt
     5341 taggtcgttc atacgttgaa aaaccgatac gatattgcct tactcgttcg taacttgtgc
     5401 cactttcttc tgtttcatat tgtcttttca attcagaaac agattgtttt gagggctttt
     5461 tagtatcatt tacatatgga tatcgataat caagttggtg tttaatttgt gctttaacat
     5521 cttcattacc attttgcata gtttctaatt gattaaccga acgatattca tcattatcta
     5581 aaatggtttc tgtagacaca tcttcaaagt acacaattga aatatttaca ttcggacgac
     5641 tactatcttc aatttgtgct atatcttttt caaattttaa atcatctgga attgacgcag
     5701 attgatgttt agataaaata ctataaataa gatggaacgg atttggtgaa gttaatcgtt
     5761 cattgacagc aatgtgctca ccagaaatag acaattgctc tagttctagt aatgatttat
     5821 catttttcac tctaccaatt aaataaagtt gttctttcgc tcttgttaat gctacataga
     5881 ctaatcgcat ttcttctgac acaagttctt tttcggcaac agctctatat gcaaccgaag
     5941 ctaaagatgg aaatgccatt tctttatcca catcaaaata atccattccg agaccaaatt
     6001 gctgatttaa aataactggt tgtttcaaat cacgtttatt aaaatctttt gacaatccag
     6061 aataaatgac aaatggaaac tctagacctt tactactatg aattgtcatc attctaacga
     6121 cattatcgtt tggaccaact acattttcct caccaaaatc tttgcctctt tcaatcaatt
     6181 catcgataaa acgaataaat tgatataaac ctctaaaact tgaattctca aactcgatag
     6241 ctttattaaa taaaccataa agatttgcac gtcgtccacg tccaccaata agtccactaa
     6301 agtattgaat aacataatga tcattataaa atttatcaat taactgatac accggatgat
     6361 ctttactata ttgttggtaa ctttgaatat ctgataaaaa catttttaat ttatcaacta
     6421 aaattgcatc tgctgcttcg tcattaatgt aatttacaat cgattgatag aagtagtcat
     6481 catttggact caatattcta atttgagcta attcgtcttc tttgaactga tatataacgg
     6541 agcgcattaa cccaactaaa taaatatctt gtaatggatt atctatcgct cttaaaaatg
     6601 ataatactaa gcggacttct gtttgttcaa agtaaccttc acgactattc acatggaatg
     6661 gaatatcttc atttttaaag gcttgttgta aattgcgagc ttgtccaaag ctgcgttcta
     6721 gaataacgat atccttgtat gtcgcacttc tatagcttcc tgttttcata tcataaactt
     6781 tttgatgttc taagatatct ttaacttgtt ctactataaa atgcgcttct tgttcactac
     6841 cagttaaatc actatgttct tgatccgctt caacaaggac ttttaagttt actggatggt
     6901 ccgattcatc atatggtgca ccataataca actgtgccgc ttcatcatat tttacttcac
     6961 cgacttgttc atccatcata tgtttgaata tatagttagt cgttgacagt acttcttttc
     7021 gagaacggaa gttttgcgac aaatcaattc gacgtccagt gccatctcca tctatagtaa
     7081 agcgttgata cttttcaata aataaacttg gatcagcttg tctaaattta taaatggatt
     7141 gcttaacatc tccaaccata aataaattac cattatgttc atcacccgtt ttgatgcaag
     7201 atagtatttt ctcttgaact cggttcgtat cttgatactc atcgaccaat atttcttgga
     7261 agtgttgacg gtatgattcg gcaatttctg aaggcgaacc atcctcatta gttaaaattt
     7321 gtaatgcaaa atgttcataa tcagaaaaat ccaaaatatt tttgctacgc ttttttcgat
     7381 tgaattctga cataacatct ttcacaatac gcgcaaggta ctttactcgt ggcgccaatt
     7441 gttgcatatc agctttcaaa tcatcagctt ctcttgaaaa gtaatcactc ttcactttat
     7501 caattaatga tttatatttt ttatactgaa gtttagcatc ttctaaggca tcgaccatca
     7561 tttcatttgc ttctttaatt ttcgctgtta cattaggcaa acgcgcgcca aattcgtgac
     7621 cagttaaata aggtatatca ataaagccac cttctaaaac acgccccatt aaacgtcgtt
     7681 catcttctat aacagctaaa tgtttatcga cgctatccat catactaaac aaatcatacg
     7741 ccttatttaa agcatcataa gcagctgtga taaatacttt agataagtct gttagtagtt
     7801 gaataagttg cgcttgttgt gcttcttctt cgtatggtgt caccaattga tccaaccaat
     7861 ttttaggatt tggatttgca acgctaaaga aatacaattg tttaataatc attcgaaact
     7921 gatcatcact tctatctgaa gacaattgct ctgttaattc aataaaagca ggatcaagga
     7981 tatcgtaatg ttgttctatg acctcatcta tcgtttgttc taataataaa atattttcag
     8041 cttcactgct tgttctaaag ttcgggtcaa tatttaatac atcataatgc tgttgaatta
     8101 atttcaagca aaaactatgg agtgtagata tttgtgcttg atgaattttg atgcgttggt
     8161 ttttcaagtg tgcatttgca ggatcagcaa tcgatgcctc ttgaatacgt tggtctacac
     8221 gatgcttcat ttcacgtgcg cttaagtttg taaacgttac gactaaaagt cgatcgacat
     8281 caatgccatc acgtaaaatc ttttggataa tacgctcaac tagtacagct gttttacctg
     8341 aacctgccgc ggctgcaaca agtacatctt gtccagttgc gtaaatactt tgccattgcg
     8401 cgtcagtcca aatcacgcct tgtggtttct ctggaattgt catctattgc tcacccccaa
     8461 attcatcatt aatgttaata ttttgaattg cttcaattgg atttattgtt tcatctacag
     8521 ttcgatatcg cttactatca atcatgccat ctacatgaca taccgattga taactacaaa
     8581 aagcacatgg caatttttgt ttgtacttta atggtgcaac ttcagtatgt ccatccataa
     8641 tatttgaagc tgtttctata aaattctctt tgttatgttg gatgaattta taaatcgttg
     8701 cttcatctgc cacttggctg cctcgtttac tcaaagagcc atctttattc aaaccaactg
     8761 gtacaatatc tgaagtgaat ttaggttcta aacgaatatc caatgcatca ataacagttt
     8821 ggtctgcatt aactaaacca ctcaacttaa actttttaat taaatcttgt tctagtttat
     8881 cttcatcaat atcagaccat gatttaaatt taattctagg ttcatgtaca tggaagtata
     8941 ataatccacc tggtttcaca atatctgtta atccaaggcg ttgtttattt tgtaaaacga
     9001 tatccatgta tgtcatcatt tgcatttgca taccataata tactttcgtt aaatcaagtg
     9061 tcgcactacc ttcagaggat ttatagtcaa tgatattaac aaaacttgta tcattctttg
     9121 tatacgtatc gatacggtca atttgccctc taatattaat tggaatacct tgagttgtcg
     9181 ttaatgtttg tgcaattaat tcgtcatttg ttcttggttt ccttctaaaa cttgtctcaa
     9241 aatgttttgg cataaacttt gaatacgtgc cttgatattt taatgcgctt agtgttgttt
     9301 ctacaatagc gccaatgcgt cttgataaat aacgatagta agctgaagaa tttaataaat
     9361 taaactgaac tttaggtaaa atttcttcca atgcttcatt cgttaattgt cttatttttt
     9421 tcaggtctaa ttgtttaaaa tcgccattaa tacgttcaga tatatatttt aaaacagaat
     9481 ggaaaatatc acctaaatca aagttttgaa gttcatactt cgttcgctca tttagtttca
     9541 gaccatgtga cgcatagtgt ttaaatgggc attgttgata accttcaaaa cgggatacac
     9601 tggcattgat ttccttacca tataaatctt tagacaacgt ttcacctaat tttacagttt
     9661 cattgtcaaa cgttaatgct gacattaaat aatctaaacc ttgatttaaa tgatcgctat
     9721 ctctaattac ttgataagca tctaaccaac tatcagccac aatttcatca tataaccaag
     9781 cacgcaatgc ttcaaataat gtaattttgg tttgcttagc atgttgcatt agtgacaatg
     9841 ggttaacttc atggtattga ggaatgttag taatttccaa ttggttgaac aatgattgaa
     9901 tttgatttaa aaatgggctg atctccttat catcaccact tgatcccatt agactgtaag
     9961 aaaatgtaac atctccctta gctctagtca tagcaacata acaaacaaat gcttcatcca
    10021 tctgtaaaat atctgatgtt ggacttaact cgacattagc ctgctgttca aagtatttct
    10081 tttcttcatc tgtaatcaag cttgacgcag ttactggttg tggcatcgtt ccatcattca
    10141 tacctactaa gtaaacatgt tgcttattat cgactttagc caaatccatc gtaccaatac
    10201 ttacttggtc caatgtttgc ggaatcataa caaattctaa ttgttctaaa ccaatatcaa
    10261 atacttctaa gaaacgttcc atcgacattg gttcatctcc aaatactaga actaagtcat
    10321 caaggatttg aattaagcca ttccatattt gatcaatttc ctccgccttt tcatgattac
    10381 catttaaatc aagttcatct cgctctgtca tcaattgatt tggcagttcg aaatattcca
    10441 tactttcata aaaagcagtt gcaaaatctt ttacagtttc cgcttgtgac atttgctttt
    10501 caaaatgtaa aattttatca atgacatctt tctttaactt aacgacttgt tcaaatgtgt
    10561 tacgttcatc ttcggtcagt ttatgcgctt tacgccccat tttgctaaaa tgttcgacat
    10621 taaatagctc atcatctaac caacgtttac cgtatatacc acgttcaagt acaaaatttt
    10681 caagtaaatc aactaagtat gcacttttta gatatgatgc cgttaacaca tcagtcttca
    10741 ataagcgtag cattggattc acttgccaat tagattgaat aacttcaatc aatgaacgaa
    10801 tcatttccat gaccggatga tgtgtcatcg aacgctttgt atcaatatta taaggaatat
    10861 tataaagcgg taatatggaa tcaaataaat aagcataaga ttcatcacga tataaaatag
    10921 caatatcttg atatcgtaat tgcttatcac gaatatcaac gatgatacgt cgcgcaattt
    10981 catttatttc ctctctcata gtcgcagatt ctaaaatatt gatatgacct tgacatgcca
    11041 ctcgattgat ttgaagtgca tcaaattctt gttcaagatg ctttaaatct tgattattga
    11101 agcgatataa ttggttgaaa tattgacgtt caatagaaat attgagttca tttgctattt
    11161 cttcaatatg tcgtaacact tccgatggtt ttctaaataa actaaattga tcgtggttac
    11221 catctgtcgt caatataatt gtgacactct tcgcatattt aattaatcct ttgattatta
    11281 aatactcaat cgttgaaaag ttgtgaaaac catcaatata tatatcagca cgttttagcc
    11341 actctgattt cggcatacaa tcaataaaat attgtaatga atcctcaccc gtaataaact
    11401 cgttttgaat gcgttgttcg aactcacggt atattaaagc aatatcctct aacttatttt
    11461 tagttcgagt ttgcatattt ttatcagcaa taaagtgttc taaatgttca ggcgttactg
    11521 catatttttt aaaatcttga atttgttctg ttaatttttc actaaaccca taatattttg
    11581 cttgtgattg ataaagtttt aaatactttt gttgttcttg aacaatgtta taaatcatca
    11641 tttccgttgc agctttagat aacttttgtt cgctataact accaacttct tggaaaatac
    11701 gatgacttaa tcgttcaaaa tgcaacactt ctgttcttaa actaccattt aattccggat
    11761 cattgacaaa ggcttgttct aattgaaatg tactttgagt tggcgcaatt aaaatgattg
    11821 gatctccaag cggatctgct ttcatttttt gttttatttc ggtcaacatt ttcgtagact
    11881 tacctgttcc cgctctacct aaataagcat gtaatgtcat gacaaaccct cacttccttt
    11941 gacacatatt ttaacacaaa gtgattgtga ttgatttatt ataagttcat ttcgaactta
    12001 gcttttattg tggtactaac aaaataaaac atcgtttatc agtattaaaa ccgacaaacg
    12061 atgttgtatt tgtttcatat taatttttag tattttcagg attgaaatta tgtttaaatt
    12121 cactaaatgg ccagaaccta aatgaaactt taccaacaat ttggtcttca tcaatgaggc
    12181 caaacgcacg gctatcttta cttacttcac gattatctcc aagcactaaa tatttacctt
    12241 ttggaatgac atttgattta ggattcgcat tcggtaaatc tttaacttgg aaagtcccag
    12301 taatgtaatc accttgttta tgttttaaat tgtagtttaa atatggttca tcttgttttt
    12361 taccattgac atataatgta tcatttttgt attctacttt atcaccagga acaccgatga
    12421 cacgtttaac atagtcatca tttttgtttg catggaagac aactacatta cctttttcca
    12481 aaccacctgt tttatatcca acaatgttta cagctactcg ctcgccatct ttcaaagttg
    12541 gatccattga ttcaccttta attgtatatg gcgtaacaat aaatttacct actataaata
    12601 aaatgacaaa agcgactgca attgaaataa tccattccaa tatttctttt ttcaattttg
    12661 acacctcttt ttaagatttg aactgaacag tccattttga aaaaggatag tatcgtaaac
    12721 taacattacc aataatatcc tttttatcga ttaaaccaaa ttgtcttgaa tcgtgcttgt
    12781 tattatcttg atcatttagc acaacaaaat tgtttggcgg aataatatca ccatctaatt
    12841 ctttaaaatt gcgcaaacta aaatctttaa tttttctgtt cttggcataa gatgcgtcaa
    12901 ccggtcggtc atcacggtat aattgtccct gacgaaacgc cattgattga ccaggtttgg
    12961 caataattcg actagtatat atctcgttac cacgcctata tgtaatgata tcaccattat
    13021 tcaattgatt aaatgtaact ttaattttat ttacaataac acgatcccct ttgttaaggg
    13081 ttggtgacat atcattattc ggaatgacat gaccaactat tacaaaagtt tgtacgaaca
    13141 gtacaatgat aatagcaagt atcaatgaaa tcaaatattt tacaactttt ttcacgatgt
    13201 cactcctttt tcgatcccat aaaatgctgt tctaactttt ttccaacaat ccaaaataca
    13261 accaacacaa ctaacattaa tatccctctt aaaggatgcg ttaaaattgt agtaatttcc
    13321 ttacctaaat aacctaaaat aattgttgaa actaactttg atgatgccaa aacaatgaaa
    13381 taatatttag gtctaatatg agatagactc gctacaaaat ttattaatgt atttggcgta
    13441 aaaggaaaac aaagtaaaat aaacaatggg attaatcctt ggcgatcaat aaaactaatc
    13501 aagcgttgaa cagcagtacg ttgtttaatt cgctgcatcc tctcagtgtt caccaatcgt
    13561 ttacagatca aatagactgt aaatgttcca gaaattaatc caagccaact aatcaatata
    13621 cctaaaatag gtccataagc ttgaatgtta attaaaatat agagtgctaa aggaaatact
    13681 ggaattatag ctctaatata taacaatata aatccaggta aataaccaaa ctgtcgaaat
    13741 atctcaaacc attcttctac ttgatgaaac gacaaatcat caatcccttt ctttggttga
    13801 agataattat tcttacatta taaagttaat tactaagtaa agaaacatta acatgtaatc
    13861 atgctaataa atcagtctct agtagtataa caatattatt gtaaggcaga tattatttta
    13921 tctttaattt tctcttaaca tcttgtcaca ttagctagta acctagttct tgcatataaa
    13981 taaaaacgag gttgtcatta catctttaca tttgtaatga caacctcgaa aatatgcttt
    14041 aaatagttaa cgtctagttc tatcttttca aacttcacta atctttgaag taatgtattt
    14101 tataaacgtt cttctaattc ttttttcaag tcttcaaaac caggtttacc taataatgcg
    14161 aacatgtttt gtttatatgc ttctacacca ggttggttaa atggatttac gcctaattgg
    14221 tatccactca ttgcacaagc aagttcgaag aagtatacga cgtaaccgaa agtttcttca
    14281 tctaattgtg gaatgttcac taccatgtta ggaacaccac catcagtatg cgctaataat
    14341 gtaccttcga atgcttttgt gttaacttcg tcgattgttt taccagctaa ataatttaat
    14401 ccgtctagat catcactatc tttttcaata gtaatatcat atttaggatg atttactttt
    14461 acaactgttt cgaataagaa gcgacggcct tcttgtacat attgacctaa agaatgtaaa
    14521 tcagttgtgt agttggcact tgaaggatag atacctttga agtctttacc ttctgattca
    14581 ccaaataatt gtttccacca ttcattaaag tattgcatag atggttcata gttaatcaac
    14641 atttctgttg tataaccttt tgcatataaa atgtttcgaa ttgtcgcata ttggtatgca
    14701 atgttttctt ctaatttatc tgaagataat tcttcacgtg cttttgcagc accaatcatc
    14761 atagcttcga tgttaattcc agctgttgca attggtaata atcctactgc tgttaaaaca
    14821 gaatatcttc cacctacatc atcaggtacg ataaacgttt cataaccttc gtttgtagcc
    14881 aactgtttta aagcaccttt ttctttatcc gttgttgcaa atatacgttt ttgtgcttct
    14941 tctttaccgt atctttcttc aactaattgt ttgaacaatc taaatgcaac tgctggttct
    15001 gtagttgtac cagatttaga aataacgttt acagagaaat ctttgtctgc taaataatca
    15061 actaactctt tcgtatatgt tgatgataag tgattaccaa caaatacaat ttcagggtat
    15121 tcattgctgt ttctaaatga tgacgttaac atttcgattg ctgcacgtgc acctaagtaa
    15181 gaaccaccaa taccgatgac tactaaaaca tcagaatttt ctttaatgcg ttttgatgct
    15241 tcaacaattc ttgaaaattc ttctttgtcg taatcaactg gtaaatcaac ccagcctaag
    15301 aagtcactac ctgcaccagt accttcatga attgttttgt gaattgattt aacaatttct
    15361 tgttgttgtt ttaattcgtg ttcaccgaaa aattctaacg ttttactaaa atctaattga
    15421 atatgagtca tctataaaag cctcctgttt catttaatat cttaatttta ctaagtttac
    15481 gtttgcgatt caattcacaa gtttgtactt aatcaataaa attgatattt atgtgacgtt
    15541 tcacacctat ttttcaacaa acatttcaaa ctggcgtcaa acactcaaac attttttata
    15601 caatttgcat gttttttaaa atacttttaa acattgataa ataagcattt acacttacaa
    15661 ctctaactat ctctatcgca ttttatgaat aaatatgtaa aataatggtt ttattttcat
    15721 taaaagtttg ctatcatgtg ttcatacgaa atattcagat aactacaatg aggtgaattt
    15781 tatgaaagag aaaattgttt tagcatattc aggaggacta gatacaagtg tggccgttca
    15841 atggcttatc gacaaaggat acgacgttgt agcttgttgc ctagatgttg gtgaaggtaa
    15901 agatttagac atcgtttata aaaaagcttt agatatggga gcagttgaat gtcatattat
    15961 tgatgcaaca aaagaattta gtgatgagta tgtaagttat gcaatcaaag gaaatttaat
    16021 gtatgaaaat gcatatccat tagtttcagc tttatcaaga ccattaatcg ctaaaaaatt
    16081 agtagagatt gctgagaaaa caaattcagt aggtattgca catggttgta ctggtaaagg
    16141 gaatgaccaa gtacgtttcg aagttgccat taaagcatta aacccatcat tgaaagcatt
    16201 cgcacctgta cgtgagtggg catggagtcg tgaagaagaa atcgattatg caattaaaca
    16261 taatatccct gtatcaatca accatgattc accttattct atcgatcaaa atctatgggg
    16321 cagagcgaat gaatgtggta ttttagaaga tccttatgct gcgccaccag aggatgcgtt
    16381 cgatctaaca aatgctttag aagaaacacc agatactgct gatgaaatca ttttaacgtt
    16441 tgataaaggc atcccagttc aaattgatgg caaaacatat gaattagacg atttaatttt
    16501 aacgttgaat gcattagctg gtaagcatgg tatcggaaga attgaccatg tagaaaatag
    16561 acttgtaggt atcaaatcaa gagaaattta tgaggcacct gctgcagaag ttattttaaa
    16621 agcgcataaa gcattagaaa cgattacgtt aacgaaagat gtcgcacact ttaaaccaat
    16681 cattgagaag caatttgctg aacaactata caatggactt tggttctcac ctttaactga
    16741 tagcttgaaa ttatttattg atagtactca gcaatacgta agtggtgatg tcagaattaa
    16801 attattcaaa ggtaatgcca tcgtgaatgg tagaaaatca ccttacacat tatatgatga
    16861 aaaattagca acttatacaa aagaagatgc atttaatcaa gacgctgctg ttggctttat
    16921 cgatatctat ggtttaccta ctcaagtaaa tgcgatgttg catggaggct atagcaatga
    16981 gcaataaagc ttggggcggt agatttgaag tacaacctga agagtgggtt gacgacttta
    17041 acgcatccat tacttttgat caaacgctca tagatcaaga tatcgaaggc agcattgcac
    17101 atgcaactat gcttgcgaat caaggcatta ttagtcaaca agacagcgaa caaattatac
    17161 aaggactaaa atctattcaa catgattatc atcaagatca aattcaattt agtgcatcat
    17221 tagaagatat tcatttaaat attgaacatg aattaattaa acgtatcggt gatgctggtg
    17281 gtaagttgca tactggacgc agtagaaacg atcaagttgc aacagacatg cacttgtaca
    17341 ctaagaaaca agtgcaagat atcatcgcat taattaagtc gttacaaagt gtaattgtag
    17401 acatcgcttc caataatgtt gatacaatta tgcctagtta tactcattta cagcgtgcac
    17461 agccaatttc atttgcacat catattatga cttatttttg gatgttacaa cgagaccaac
    17521 aacgatttga agatagttta aaacgaatcg atattaatcc tttaggtgca gcagccttaa
    17581 gtggtaccac ataccctatc gatagacacg agacaacagc attgttgaac tttggcagtc
    17641 tctatgagaa tagcctagat gctgttagtg acagagacta tattattgaa acattgcata
    17701 atatttcttt aacgatggtt cacttatcac gctttgcaga ggaaattatt ttctggtcca
    17761 cagacgaagc taaattcatt acattatcag atgcattttc aactggctca tctattatgc
    17821 cacaaaagaa aaatcctgat atggcagaat taattagagg taaagttggt cgaacgactg
    17881 gtcatttaat gagcatgctt atgactttaa aaggattacc tctagcatat aacaaagata
    17941 tgcaggaaga taaagaaggt ttattcgatg ctgtccatac aattaaaggt tctttacgta
    18001 ttttcgaagg tatgattcaa acgatgacaa ttaataaaga acgactcaat caaactgtta
    18061 aagaagattt ttcaaatgca acggaactag cagattattt agtaactaaa aatattccat
    18121 ttagaactgc acatgaaatt gtaggaaaaa tcgtcttaga atgtatacaa caaggtcatt
    18181 atttattaga tgttccttta gcaacatatc aacaacatca ttctagtatt gatgccgata
    18241 tttacgatta tttgcagcct gaaaattgtt taaaacgacg tcaaagttac ggttcaacag
    18301 gtcaatcatc ggtcaaacaa caacttgatg ttgctaaaca attactatca caataaatac
    18361 gttaatctac ctacccacaa tgtctattaa aattacattg tgggtatttt aatgctctct
    18421 tcgtcttgtt gaacatcaca tttttaagat tcctaaaatg tttgataatt cttttaaatt
    18481 tatattacaa aaatgttata aattgtaaaa gaaatgtgta aagcgttttc acaagcaggt
    18541 ttttgtagta ttttaaaatt gttagactac aaataaagag atgaaaggat aaagactatg
    18601 actaactctt cgaaaagctt cactaaattt atggctgctt ctgctgtttt tactatggga
    18661 tttttatcag tacctactgc tggcgctgaa caaacaaatc aaattgcaaa taaacctcag
    18721 gctattcaat ggcatacaaa tttaacgaat gagcgattca ctactatcgc acatcgtggc
    18781 gcaagtggct atgcacccga gcatacgttt caagcatatg ataagagtca taatgagtta
    18841 aaagcatctt atatcgaaat tgatttacaa cgtaccaaag atggccattt agttgctatg
    18901 catgatgaaa ctgttaaccg tacaacaaat ggacacggta aagttgagga ttataccctt
    18961 gatgaattaa aacagttaga tgcaggaagt tggtttaata aaaaatatcc aaaatacgca
    19021 agagcaagtt ataaaaatgc taaagtaccc actttagatg aaattttaga acgttatggc
    19081 ccgaatgcaa actattatat tgaaacaaag tcacctgatg tatacccagg aatggaagaa
    19141 caattattag cttcattgaa aaagcatcac cttttaaata acaataaatt aaaaaatgga
    19201 catgtaatga ttcaatcatt ttctgacgaa agtttaaaga aaattcatcg tcaaaataag
    19261 catgtgccat tagtaaaatt agttgataaa ggtgaactac aacaatttaa cgaccaacgc
    19321 ttaaaagaga tacgctctta tgcgattgga ttaggtcctg attatacaga tttaactgaa
    19381 caaaataccc atcatttaaa agacttagga tttatagtac atccttatac agtgaatgaa
    19441 aaagctgata tgttacgatt aaataaatat ggcgttgatg gtgtctttac aaatttcgct
    19501 gataaatata aagaagtcat taagtagtaa tgttaaacta gaaaacataa atacaaaaat
    19561 atagctatta ctataaaaaa cagcagtaag atatttccaa attgaaatta tcctactgct
    19621 gtctttttgg gagtgggaca gaaatgatat tttcgcaaaa tttatttcgt cgtcccaccc
    19681 caacttgcac actattgtaa gctgactttt cgccagcttc tgtgttgggg ccccgccaac
    19741 ttgcattgtc tgtagaaatt gaggagctaa tttctctgtg tcggggctcc accccaactt
    19801 gcacactatt gtaagctgac tttccgccag cctctgtgtt ggggccccgc caacttgcac
    19861 actattgtaa gctgactttc caccagcctc tgtgttgggg ccccgactat ttttgaaaag
    19921 agcgtgttac acgggcattg ttttacagtc aactactgct aaaataaaat taacgagctt
    19981 agggctttgt tttctgtccc aagctcgtta aatcacatat gataattaat tatgcccaac
    20041 cacgatatct agctgcttct gctgtacgtt taatacctat gatatatgct gcaagtctca
    20101 tatctatttt tcggttttga gacaattcgt aaatcgtatc aaatgccgct tctaattttt
    20161 cacgtagctt ttcatcaact tcttcttcag accaataata accttgatta ttttgtaccc
    20221 attcgaagta agaaaccgtt acaccaccag cacttgctaa tacgtctgga actaataata
    20281 taccacgttc agttaaaata cgtgttgctt ctggtgttgt aggtccatta gcagcttcaa
    20341 caacgatact agctttaata tcatgtgcat tgtcttctgt aatttggttt gaaatagccg
    20401 ctggtactaa aatgtcacaa tctaattcaa acaattcttt atttgagatt gtttcttcaa
    20461 ataaatttgt taccgtacca aaactatcac gacggtctaa taaataatct atatctaagc
    20521 catttggatc gtgtaatgca ccgtaagcat cagagatacc tacaattttt gcacctaaat
    20581 catataagaa tttagctaag aaacttccgg cattaccgaa accttgaata acaaccttgg
    20641 caccttcaat ttgcatatta cgacgttttg cagcttgttc aattgcaata actacaccta
    20701 gtgcagttga tctgtcgcgt ccatgagaac cacccaatac aattggttta cctgtgatga
    20761 aacctggtga attaaattta tctaatgcac tatattcatc catcatccaa gccataattt
    20821 gtgagtttgt aaatacatct ggtgctggaa tatctttgtt cggacctacg aattgtgaaa
    20881 ttgctcttac atatccgcgt gataaacgtt caacttcatg aatgctcatt tgacgtggat
    20941 cacaaacgat accaccctta ccaccaccgt atggtaagtt tacaatgcca catttcaaag
    21001 tcatccacat tgataatgct tttacttctt cttcatcaac atctgggtgg aaacgcacgc
    21061 ccccttttgt tggtccaaca gcatcattat gttgcgcacg gtaacctgtg aatgttttta
    21121 ctgtgccatc atccattcgt acagggatac gcacttgtaa cattcttaaa ggttctttaa
    21181 ttaaatcgta cattccttcg tcaaatccca atttatgcaa tgcttcttta ataattcctt
    21241 gagtagaagt tactaaatta ttgttctcag tcatgatcct tttcgcctct tctttaccta
    21301 atgatttcgc tttcaaacat attgtaacat aacgtattcc tttttaaagc ccttacaaac
    21361 tgattgttac aactttttga cattattgaa atacatgtct tattttttca agtgcaaggt
    21421 ccaattcttc tttagtaata attaatggtg gtgcaaaacg aatgacagta tcatgcgttt
    21481 ctttacataa taagccttct tctttcaaag cttcacaata tggtctagca ctttcattaa
    21541 gttccacacc tataaacaaa ccacgtccac ggacttcttt aattgatgga tgatcaattt
    21601 gctttaattg ttctttaaaa taatctccta attctaaaga gcggcctggt aaatcctcat
    21661 caacgataac atctaatgca gcaattgatg cagcacaagc aagtggatta ccaccaaatg
    21721 ttgaaccatg tgagccaggt gtaaagacat ctaatacttc tttatctgct aatacaacag
    21781 aaattgggaa gactccacca cctagtgctt tacctaaaat atagacatca ggttttacat
    21841 tatcccaatc cgtagcaaat aatttacccg aacgacctaa tcctgcttgg atttcgtcag
    21901 caataaataa gacattatgt tcatcacata attctctaat tgctttcaaa tatccttctg
    21961 gcggtatatt tatacccgct tcaccttgaa ttggttctac taaaactgct gcagtatttt
    22021 cattaattgc agctttcaat gcatctacat ctccaaaatc aacttttcta aatccatcta
    22081 ataacggacc ataaccacgt tggtattctg cttctgaaga taatgaaact ggcgccattg
    22141 ttcgaccatg gaagttacca ttaaatgcaa tgatttctgc tttatttggc tcaattcctt
    22201 taacatcgta tgcccagcgt cgtgctgctt tcaaagctgt ttctactgct tcagcacctg
    22261 tattcattgg taaagcttta tctttacctg ccagtttaca aattttttcg taccattcac
    22321 ctaagttatc actatgaaaa gcacgtgaaa ctaaagtcac tttatcagct tgatctttta
    22381 atgcttgaat aattttcgga tgtctatgac cttggttaac agcggaatat gcagataaca
    22441 tatccatata tttattgcct tcaggatctt taacccatac cccttcagct tctgaaatga
    22501 caattggcaa tggtaaataa ttatgtgctc cgtaatgatt tgttaactca ataatttttt
    22561 cagatttagt catcatatct ccccttttca tcatttataa ctattataca tgaaacatta
    22621 tccaaataat tacattagtt ttcaaagcag atacttttcc accaaaaaag atgaaataat
    22681 cactaagttt cattaaattt gtctattttg aaaaccctta catttataat gacataatta
    22741 cttaaatgat tacaagcaaa agaattgata attttacact taatcaaaag tatattttac
    22801 taagaatatt tttatttata aatattgaaa accactaaca aattgcatac acaatatcat
    22861 tagtggtaac agttaaacac ttatttatct ttacgtggta atggataaaa cccttcatta
    22921 aattgatgcc ataaattagg agttaagtga tgattatctt ctctctctgg atcaaagtaa
    22981 ttaataattt catcttcccg tccatcttta attttttcaa caaattgata atccagtagt
    23041 agctctctac caatggctac taagtcaaca ccaacatttt caactgcatc taaagcttcg
    23101 tcagctgtga aaattgaacc aataccgata agtggcatac gaccatttat ccatttgtga
    23161 attaaaggca gtctttcttg tccagcgtat ttaccttcac gtgtcgttgc atgcgtatcc
    23221 atcattgaaa catgaatata gtcgattggc atatggctaa ttttattaac gagttcctct
    23281 gtaatttcca ttgtgattcc tggagactcc gcttcctctg gagataatct gtatccaact
    23341 ataaagtctt tattgccata cgcttctttc gctttaagta cttcttcaat cacagcgacc
    23401 gggaatttat attgatttgc ccatacatca tttcttctat tatagtatgg tgatacaaat
    23461 tgatgaatta agtaatgatt cgcgccatgt atttcaacac catcaaaccc tgcttcaatt
    23521 gcacgtcgcg ttgcttcacc aaaatccttg attgcttgtt caatctcttc attcgtcatt
    23581 tctctagcac tatgttcttg tttctgacca aaacttttta aagaaattgg acttggtgct
    23641 acgacgtctc catcaggtgt taattcaggc aatgcttgtg caccgccatg atgtatttgt
    23701 acgagtgctt tggcaccgtt tttcttcatt gctgtagcta atcgttttag tccttcaata
    23761 ttactgtcat gcgcgattga tggctgtcct ggaaatgctt ttccgacatc actcacatta
    23821 ctcgcagcat taattgtaat accaacatct tgtgaacgct tttcaatata aggaagttct
    23881 acatctgaaa tagtaccatc atcatttgaa gaaatatgtg ttaaaggggc taacacaaat
    23941 cgatttctca actctactcc atttggtaat tctactttat caaacaatgg ttcgtattta
    24001 cttttcatta cttaattcct ccttaaaatt attgagttga ctataacatg taattttttc
    24061 attctccaat tatctgttta tatagttgca attcgtttaa tactttaagt tgtagttctc
    24121 atttctaaaa taaataaaaa aaacaaatcc acatacaata ttgcaaatca acgattctat
    24181 ctaacaaaga taatggatat gtcaccttaa accatttgta cgtgtaaata gaatcaatca
    24241 tattacgtta tcgtagacaa aaagagatta gtatctaata aaatttaata gatactaatc
    24301 tcttttatag tctaagaaac tttcatttca gaccctttgt atgattttcg gtacgattta
    24361 tctgttcctt tagtcgtttc gaattgctcg ctttgactgt tttatccaga ttggtaagcg
    24421 ttctttaagt gtttgaaacc catatttttc tgtttctctg atttcatcta atactgattg
    24481 tttttccttc ttacgctcat aatttttgaa gtaatcatta tcctttaatg atagattaag
    24541 ctttccttca tcatctatag acaaaatttt agctttaaca atttggcctt ctgatagaaa
    24601 tttcttcaaa ttatgaacgt agtcatccat aatttctgat atatgaatca gtccttcagt
    24661 atgattaggg gtctcaacaa acgcaccgta tggttgaata ccagttacac gcaccttgat
    24721 atgttggcca attttgtagt tattcaactt aataacccct tatttcgttt acttaacact
    24781 attatcatag cacaaatcga aatggtggac taattaaaac atcaaatcat acgaatatta
    24841 ttttataaat gaataagaat tctacaaact tggatttaca aataaaatta gcaacaaatt
    24901 cctatctaaa tcaatatgat atccagctac tttgttttca atttatttac tatttgaata
    24961 gcaattctct gtaaaaacat aaaaagcaac ctcaactatt atctttaaaa tacacatcta
    25021 tttaaaaact gtgctttctt gataaatata ttgagattgc tcatcatatt agtttattta
    25081 ttttcgttgg aatatatact aatccattca taaattagct ttatccgagt ttaaaatgtt
    25141 ggtagttaat tatgtttaga tattattctt caacatcaat agattcaatt acaacatcat
    25201 gaagtggttt atcttgtggt cccacttttg tatttgcaat atcttctaat gtagtttcac
    25261 catcaatgat ttgaccgaat actgtatgtt tttgatctaa ccatggtgta ccaccctttt
    25321 cgccatatgc atcaacgatt ggttgaggcc agccaccatc tgcaagttga cttaacatat
    25381 tttgaggtac ttctttcatt tgaacaatga aaaattgtga accattagta ttaggtcctg
    25441 agttagccat tgataatgcg ccatataagt taaatgcatt taatgaaaat tcatcttcaa
    25501 aagcaccgcc ataaatactt tcgccaccca taccagtagc tgttggatcg ccaccttgaa
    25561 tcatgaagtc attaatgaca cggtggaatg tgattccatc ataataacca ttttttgcat
    25621 gtgtcacaaa attttcaact gtttttggtg caatatttgg aaataatttg aatgtcatgt
    25681 cacctttatt tgtgtgcata accactttga tttcaccttg ttgtacttct ttgtttaact
    25741 gtggatagtt agccatttat attctccatt catgttatga tacatatata ttaacatact
    25801 tttaagggag gaaaatagca tgaagctata tcgattttca cacaaaacag gtagctatgg
    25861 tgtcacgatt gttgaagaaa atggagacga tgtccttgtt aaagttgaac aagttatcaa
    25921 acacccgaaa caaggtgatt tacataaccc tactgaaact gaaggtgtat ttttccatga
    25981 ccgcaaagca ttaagccatt ttgaaaaacg ctatacgaaa cgttcacaat tacgcgactt
    26041 caatgttgat gtattgcgct atgaagattc acttcaacaa gcaattacag atttagaaac
    26101 taaacttaaa gctcagcaaa caaaacatgc tgaaatgtct ttagctagtt tagcacgctt
    26161 aaaagaagat tattcacttc aatacaaaga aaattttaaa taaaaaatga cgtgtttctt
    26221 cttatttaaa tacttctgaa aataaagcac aacaaggagt gtgtacgttt ttcagaacta
    26281 tatcattcat gtataatgaa taacataaat attttttaaa ggaggacaac atagtgagtt
    26341 tgttacatat tgcggtgata ttaccgttaa tattcgcact cattattcct atcctgtata
    26401 gattttttaa acgtatacat ttaggatggt tcgtattacc tgtccctatc gtcatattta
    26461 tttatatgct tacattaatt aaaacgacga tgtcaggtaa tactgtaatg aaaaccttaa
    26521 attggatgcc tcattttggt atgaactttg atttatatct tgatggctta ggtttactct
    26581 ttagtttgct tatttcagga atcggcagtt tagtagtatt atattcaatc ggctacttaa
    26641 gtaagtcaga acaactaggg aatttttatt gttatttatt actatttatg ggtgcaatgt
    26701 taggtgtcgt actttcagat aatgttatta ttctatattt attctgggag ctaacgtcat
    26761 tttctagttt tttacttatt tcattctggc gcgaacgaca agcatctata tatggtgctc
    26821 aaaaatcgct cataatcaca gtatttggtg gtctatcatt attaggtggt atcatcttac
    26881 tcgctatacc aacacaatca tttagcattc agtacatgat tcaacatgct tctgaaattc
    26941 aaaatagccc attcttcatt tttgcgatga ttttaatcat gattggtgct tttacaaaat
    27001 ctgctcagtt tccattttat atttggctac cagatgcaat ggaagcacct acaccagtca
    27061 gtgcttatct tcattcagca acaatggtta aagcagggtt atatttaatc gctcgaatga
    27121 caccaatctt cgcagcatcg caaggttggg tatggactgt cacactcgtt ggtttaatta
    27181 cattattctg ggcttcgcta aacgcaacaa aacaacaaga cttgaaaggt atactggcat
    27241 tttcaacagt atcccaatta ggtatgatta tggcgatgct tggaatcggt gccattagtt
    27301 atcactatca aggcgatgat agcaaaatat atgctgctgc atttacggct gcaatattcc
    27361 atttaatcaa ccatgcaaca tttaaaggtg ccctatttat gattacaggt gcagtggatc
    27421 attctactgg tacacgtgat gttaagaaat taggtggctt actaacaatt atgcctattt
    27481 catttacaat cactgttatt acagcattaa gtatggctgg tgtaccaccg ttcaatggtt
    27541 tcttatcaaa agaatcattt ttagaaacaa catttacagc aagccaagca aatttattca
    27601 gtgttgatac attaggctac ctattcccaa tcattggtat agtgggcagt gtcttcacat
    27661 ttgtatattc aattaaattt ataatgcata tatttttcgg acaatataaa cctgaacaat
    27721 tacctaaaaa agcacacgaa gtatcaatat taatgctttt atcaccagct attttagcta
    27781 cattagtaat tgtatttggt ttattccctg gcattttaac taattcgatt attgaaccag
    27841 ctacatcttc gattaatcat acggtaattg atgatgttga attccatatg ttccatggat
    27901 taacgcctgc ctttttatca acattagtga tttatatttt aggtatctta ctaattgtga
    27961 catttagtta ttgggtgaaa ttgttgcaac gacaacctgg taaactaaca ttcaattatt
    28021 ggtacaacag aagtgcaaat gttattccaa actactctga aaagatgacg aatagctatg
    28081 ttaccgatta ttcacgtaat aatttagtta tcatttttgg tgcattaatt ttattaacat
    28141 ttgtcactat attctcagta cctttcaaca ttaattttaa agacgttagt ccgattagaa
    28201 ttttcgaagt ttgtatcgta attttattat taagtgctgc ctttttaatt cttttcgcta
    28261 aatcaagatt atttagcatc attatgttaa gtgcagttgg atatgctgtg tctgtattgt
    28321 ttatattctt taaagcaccc gacttagcat tgacacagtt tgtcgttgaa tctatttcaa
    28381 cagcattgtt cttattatgc ttctaccact taccaaattt aaatcgttat aatgaaaagc
    28441 gctcattcca gcttactaat gctttaattg ctggtggtgt tggtttgtcc gtcattatta
    28501 tcggtttaat tgcatacgga aatagacatt ttgaatcgat atctaagttt tatcaagagc
    28561 acgtttatga tttagctcac ggtaaaaaca tggtaaacgt catacttgtt gatttccgtg
    28621 gtatggatac tttattcgag tcatctgtgc ttggtatcgc aggattagct gtatatacaa
    28681 tgattaaatt acgtaaaaag cgtcaaacgc aaggtaacga ggtgaaaaat catgaataga
    28741 caacaaaatg atctaatttt gcaatttgct gcagttatta tctttttcat ggtaatggtc
    28801 tttggttttt cacttttctt agcaggacat tatacacctg gtggcggttt cgtcggcgga
    28861 ttattattcg caagttcact tgttatcatt acgattgcat ttgatataga aacaatgcgt
    28921 aaaattttcc cattagattt taaaatcttg ataggtatcg gattagtttt ttgtattgcg
    28981 acgcctatcg caagttggtt tttaggcaaa aatttcttta cgcatgtcac atttgatata
    29041 ccgttattta tattagaacc tgttcatatg acaacagcag tattctttga tttcggtgtt
    29101 ttatgtgcag tagttggtac tgtcatgaca attattattt cgattggaga gaacgaatag
    29161 tggaaattat tatgattttt gttagtggta ttctcacagc aattagtgtc tatctcgttt
    29221 tgtctaaaag tctgatacga attgttatgg gaactacact attaacacat gcagcaaatt
    29281 tatttttaat aactatgggc ggacttaaac atggtactgt tccaatttat gaagcgaacg
    29341 taaaaagcta tgttgatcct atcccgcaag cacttatttt aacagcaatc gttatcgcct
    29401 ttgcgacaac agcctttttc ttagtattag catttagaac atataaagaa ttaggcacag
    29461 ataacgttga gagtatgaaa ggagttccag aagatgattg aaagtaatat gcttgtgtta
    29521 acgctagtta ttccagtaat tacagccata ttacttgtct ttattggaaa gcgtcctatt
    29581 ataaagcgtt atgtcgcact aggcggtaca ttattaacct tggtcgcggc aattatcaat
    29641 ttagcaaatg ttgttaaaca tggaccaata cgcgtagagc taggttcatg gaaagcacca
    29701 tacagtattg tctttgtatt agacatattc agtgccctac taataattac tagtattatt
    29761 attacagcta ttgtgatttt atattcatac caaacaattg gtattgaacg tgaaagatat
    29821 tattattatt tttcagtact atttatgtta ataggtatca ttggtgcatt cacaactggt
    29881 gacattttca acctattcgt atatttcgaa gtatttttaa tgtcatctta tttcttatta
    29941 gtaattggtt ctacaaaaat tcaactacaa gaaacaataa aatatgttct tgttaacgtt
    30001 gtatcgtcat ccttcttcgt aatgggtgta gcgattttat attcagtagt aggaacattg
    30061 aatctagcag atataagcaa taaattagct aacctttcag cgcatgacag tggcttagtc
    30121 aatatcgttt tcatactatt tatctttgtt tttgctacaa aagctggcgt attcccaatg
    30181 tttgtttggt tacctagtgc atactatgca ccaccaattc caatcattgc attctttggt
    30241 gctttgttaa caaaagttgg tgtttatgca atcgctagaa cattgagcct attctttagt
    30301 gataatgtaa gcttttcaca ttatgtcatt ttattcttag cactattaac gatcatcttt
    30361 ggttgtgtcg gtgctgttgc atatgccaac attaaaaaaa tcatcctata caatgtcatg
    30421 attgctgtag gtgtgatctt agtcggcgtt gcaatgatga cagagtcagg tatgattggg
    30481 tctatttact atacattgca cgacatgtta gtaaaacttg cattattctt gcttatcgga
    30541 attatgatta aaattacagg cactgctgat ttaagacaat ttggtggctt aattaaacga
    30601 tatcctgtac ttggttggtc attctttatc gcagcattaa gtttagctgg cattccccca
    30661 ctcagtggct tttatggaaa attttttatt gtccaatcaa catttgaaag aggattttat
    30721 ttaagtggtg tcatcgtctt attatcaagt ttagtcgtat tatattctgt cattcgcata
    30781 ttcctacaag gctttttcgg tcaaccaaaa ggatatgatc ttaataacaa agtcgacgtc
    30841 aaatatttaa ctacgattgc aatcgttgca gttgtgataa ctgttttata tggattgtca
    30901 gcagattact tatatccaat ggtaaaagct ggtgcagaaa cattctacaa tccatcaacc
    30961 tacgttaaag ctgtattagg aggtaaataa catggctgta caattagtat taaactttat
    31021 tatcgcagtg ttttggttgt ttgtgacaaa tagttacaca acaaataact ttgtgttagg
    31081 tttcatcttt ggcctagttc ttgtttacct cttacacaga gtgttaccag gtagatttta
    31141 tgtcatcacg ctatatcgta ttattaaatt agttattatt ttcttaatcg aactgattaa
    31201 agctaatttt gatgttttga aaattattat taaaccttcg attaaaaatg aaccaggatt
    31261 ctttgtttat cacacagatt taaaaaaaga ttggcaaatt gtcttgctgt ctaatttaat
    31321 tacattaaca cctggtactg tagtgcttgg tgtaagtgac gatcgtacaa aaatttatat
    31381 tcatgccata gatttttcaa ctaaagagca agaagtagaa agtattaaaa catcattaga
    31441 gaaaattgta agagaggtgg gcgaaatata atgaatcata atgttattat cgttattgca
    31501 ttaatcatag ttgtcatttc tatgttagct atgctcattc gcgttgtgct aggcccatca
    31561 cttgccgatc gtgttgtcgc attagatgcg attggtcttc aattaatggc agttatagca
    31621 ttattcagta ttttattaaa tattaaatac atgattgtcg ttattatgat gattggtata
    31681 ttagcttttt taggtactgc agtattctct aaatttatgg acaaaggtaa ggtgattgaa
    31741 catgatcaaa atcatactga ttagtcttgc acttatcttt gttatcatcg gtgctttaat
    31801 tagcgcccta gcagctatag gattattgag acttgaagat gtatattcac gtgcacatgc
    31861 tgccggaaaa gcatcaacat taggtgcaat gtcattacta tttggtacgt ttttatattt
    31921 tattgctact caaggttttg taaatatgca attaatcgtt gcgattatct ttgtattaat
    31981 tacaggtcct ctttcaagtc atatgattat gaaagcagca tataatatta aaacgcctta
    32041 tactaaaaag actaaagtcg atgaaatttc ggaagactta aaagacacaa aattgtagat
    32101 tatataacaa aatcatgaat ataaatcaac aacaaacagc agtaagatga ttccaaatta
    32161 ggaatgattt tactgctgtt ttcttttgac attgttacct ctttttcaat gattttttct
    32221 ttgactacag attcgcccta tctacatata tctctttaat ttaattgcct ttcatgtcgt
    32281 tatgtattat gataataata attataaatc gtaacgatta cgttttaaaa agagagaggt
    32341 tttattatgc attggacaat tatcggcggt ggcatacagg gaactgcaat cgcacaaaaa
    32401 ctattatcaa gcggattaac aacagaccga ttaacaatca ttgacccaca cgaaactttt
    32461 tgccaaaggt ttaactcata tacaaatcga atagaaatgc cttatttaag atcaccgatt
    32521 gtacatcacg tacatccaca accgttccat ctaaaacaat tcgctaaaca gcaccaatat
    32581 acaaatgctt tttatggtcc ttatcaacga cctgaattga caatgtttat ggatcatatt
    32641 gcacatgctt ctaaacaata tcaattagag gattgcttgg ttcaaggttt agttcaaact
    32701 ttagataaac aagaagacaa atggcatatc aagttagaag atggacaaat tatcactaca
    32761 gattgcgtcg ttattgcaat aggcagtaca aatattccgt ttatgcctga cattttaaaa
    32821 gacaaacaga atgtaaatca tatcttcgag aaagaacttg atcaagtagt atatgataag
    32881 accgatcata tcgttggtag cggcattact gctgcacatc ttgcacttaa attgttaaat
    32941 catgataacg ataaaaagat tcatttatgg ctaaataaag atattgaaat acatgacttt
    33001 gatgctgatc ctggttggtt aggtccgaaa aatatgtctt catttttaag tactaaaagc
    33061 atgcctgaaa gaaatgccat tgtacaacgc gaacgtcata aaggatcaat gcctcacgaa
    33121 ctgtacttac gccttaaaaa acatattaaa aatggtcgta taaatgtgca taaaacacct
    33181 atcactcaaa ttagtggtgg tgtaattaac actgaaaatg attctgttcc atatcaacag
    33241 attatggttg caactggttt tgaacaagat tttatgtcac aaccacttat taagcaatta
    33301 atacaaaatt atgatgcacc tatcaacgaa tgtaattacc ctgttatttc cgaaaaatta
    33361 gaatggatac caaatctatt tgtcgcagga tgctttgcag acttagaatt aggaccattt
    33421 ggtagaaatg ttatgggtgg ccgtaaagct gccgaacgca ttgaacaagc atttctaaaa
    33481 ctacaacaat atagcgcata aaaaaactgc tagccgtagt tatgaatatc tcataacatt
    33541 tcagctagca gttcttttat tttaaaggtt taatagcaac tgtaccacgc ataactgtaa
    33601 ttaattgttc tttgtcattc ttaattttta tatcccatac atgtgtcgac ttacctcgat
    33661 gaataatttc agctgtcgca gtaacacgac catctttagc agaatgaata tggttagcat
    33721 tcatctctaa acctaatgga ataaatttgg ttgtatcaat taaattagca gatcctaatg
    33781 aacatgctgt ttcacctaaa gcaatcgaag ccccaccatg taaatatcca aatggttgtt
    33841 ttactttatc agtaacaggc atagaaataa caactaaacc atcttcctgg tgatctattg
    33901 acatctcaaa tgtctctaat aaatgagtca tattttcacc tctttatgct tatagtacca
    33961 tagcagcaat agtaccgaaa atcattaaag gaatattata aaacaagaag tttggtacac
    34021 atgtatcacg tatatgatca tgttggccat caacatttaa tcccgcagtt ggtcctaatg
    34081 ttgaatcact tgcaggcgaa cctgagtcac ctaatgcact cgctgttcca atcaatgcga
    34141 ttaatgccat tgtatctagt ccaattgacg ctccaaaagg aatgaataat gatgcgataa
    34201 taggaattgt tgcaaatgat gatccaatac ctaaagtgac aattaaacct atcacataca
    34261 tcatgataat gctaaataat ttattatcac cagtaatact tgttaaagtt ttaactaatt
    34321 catctatatc accagtagca ttcattacac cagcaaatcc atttgctgtt aaaataacta
    34381 caccaatata agccataatt ttaatacctt caacaaactt agcatctaat tcataccaat
    34441 tatatgcacg tgaaataaag aatacgagta cccctgccag tgcaccaaaa atcattgaat
    34501 ctgtaaatgt ttgtactaaa aatgtagcta gtattgctac aattgttact attaagatat
    34561 atggttttaa ctctgtaaca ttgtcactat ctgaaatttt acgtgtttca tattcacgtg
    34621 gtttacgata tacatataaa ccgataagta agccaacaat ataccccatt gaaggaataa
    34681 gcattgcttt ccaaatcata ttaaactcaa ttgggtgatt tgcctttgca aagccacttt
    34741 gaataatttg ctggaaaatt tgaccgaatc catatggtaa taacacatac gggaaacata
    34801 aaccaaaacc gataatcaaa ccgattaaac gtctatctat ttttaagtca ttaaacagac
    34861 ttaacaatgg tgggatgaca attggaatga atgcaatatg tacaggaatt aagttttgac
    34921 tcatgatact catagctaat aatgcaatga ttattgtcac tttgacttta actcttgacc
    34981 atcgactatt ttcagcgtga attgcattta taatttttcc tactaaatag tctgtgatac
    35041 cactgtatga aattaatgct gcaaatccac ctaataaagc atagcttaat gctacctcag
    35101 caccatcgac tatatttttc ccaaatacat ttataacttt ttcaatgctc atgcctgaaa
    35161 ttaagccacc aactagcgca ctgataaata agcttataac tacgtttaat cgacataaac
    35221 atagcacaat cattaaaatt actgctatta ctactgcatt tatcatatga caaccatcct
    35281 ttatcactct atcgaactaa agcgtttata gactacatag tatcagtagc tttaacacct
    35341 gtcaatagca aactatacca ataatcttta ttttttagtt aattgtcttt cttaaaataa
    35401 ttttagcttt cattaaatta aacaatttta caagcttgga acaccaatca aaatcctaag
    35461 ttctaaaatg caatattagt agtcgttgac tgaatgaaca tatgcttata atattttttt
    35521 gcaatgctag tcaagttgat ttatgctcac aaggatatgc gatttatatt ttcttacaac
    35581 aatgaaaatg cctgatacaa tgcgatcctt tatactttca agagttaaat tagaaatgta
    35641 tatcaagaca caagttgtat caggcaaata attaaattat tgttgtttta accattgtac
    35701 tatcgtcgga atcataaatc ctgttggccc ttttggacca ttatatgaag ctttattagt
    35761 cgttgctgga cctgcaatat cgaaatgaat gtgaggtgtt tgaccactaa aatgtgttac
    35821 aaaacttgcc gcaaatagcg ctttaccttg tccattcgta tggttaacta aatcagcgat
    35881 atcactgtgt ttaatacttg cacgttcggt tgcagtaatc ggtaattcaa ataccatttc
    35941 atcgacttca gaacttattt gtaatatatc gtttaatatc actttactat tcgattcaaa
    36001 tgcagcagct ttatcatcgc ctagtgcaac aattgctgca cccgttaatg tagcaaagtc
    36061 cataatcaca ctaggctgat attgatttgc ataaaacaca gcatctgcaa ggactaatct
    36121 accttcagcg tctgtattca ttacttctac agtttcacca cttaatgctg taaatacatc
    36181 atctggcttc attgatgctt catttatcat attttcagca cacgcaagca ctccgacaat
    36241 atttacaggc agttgtaaac gactagccgc ttcaatgata ccaacgacat tcgcagcgcc
    36301 acacatgtca aacttcattg tagccatgcc attcttcgtt ttaatactat aaccaccaga
    36361 atcatacgtt atacctttac caactaaggc aattggtgct tcatctttgt ctttgccatt
    36421 atatgtgatg gttactaatc tcggtttatg cttactacct ttacctactg cttgtaaaag
    36481 tccgaatcct tcagaaacta aagtgtcata atctttaaca tctactttga cctttgtatt
    36541 tttaaaatga ttaacaatat cttctgcaaa tgtttgtggt gttaatacat tcggtggcat
    36601 attactaaag tctcttgcca aattaatgga ttggccaata ctgataccct catgaataaa
    36661 atctaattca attaatgatt cactaataag gtttaaattc gtcttaaacg gtgccttctt
    36721 acttgattta taatgatcga attcatatgt tgcacgctca ctttgaatac cgcatgccat
    36781 taatacatct gataactgat catattttga aataaatgaa tccataagta aatacgtatc
    36841 ttcaatgtgt tctgacttta tgtattggaa aagatgtccc catattttca acatatcttg
    36901 ataactacgt gtctttaagt ttcctaaacc aactgtaatt aaacgatatg tttgatcttg
    36961 tacatcaaat gcagttgtat aaatcttccc aactttacta ccaataatat gttgatgttt
    37021 tagtctttca agtgattctg taatatcgat atgattaaaa ctaatgcgct ctaactgatt
    37081 taaatgttct ggtataccaa taatcaatgt atttatttcg ttgcttagtg tgttatttaa
    37141 tttaaaattc ataatgtacc tccttagatt tgatatgtta ctcacttcaa attgtacaac
    37201 aataaagccc ttcagtgaca ctgaaggact ttataaatga ataatttaat tttatgtgtt
    37261 tagctgaaac tttatttaaa gcctagaatt tacctttttt gaatgctaaa ccgataccac
    37321 cgattttgaa taccgcacgt gtatcaatca cttttttcat gaatgctgct tttttaccag
    37381 cgataggttt accaaatacc atacctacac cgtcatgtga acctaaagaa caaacagttc
    37441 cacgatcaac gtattcgaat tcttcagttg attcaccgtt taagatgcgt ttaatgtttt
    37501 tagcaacact ttcaccttgt tgcattgcaa tttgtgctgt agttggtaat ggacgttctt
    37561 ctccagctgg gataaacgct gaacagtcac caataacaaa aatgttgtcg taaccattga
    37621 ttgttaaatc ttgctttgta acgatacgtc cacgtttaac gccttcaaat gattcttcca
    37681 ttaatttact accacgtaca ccagctgccc atactgaagt acctgcattt aattgttgtt
    37741 tttcaccatc tacttcaact acaaaacctt tttcgttaca agcaacgatt ggtgtagcaa
    37801 ttttaaattc aacaccgcgg tcttctaagt agctaactgc gtggttaact aattcttctg
    37861 agaacattgg taacatttta ggtgctgctt caacacaagt gattttaact ttattttgat
    37921 ccacaccata tttgctacat aattcaggaa ttctgtctgt taattcacct aagaattcaa
    37981 caccagtgaa tccagcacca ccaactaaga tagataaatc gttatcatct ttttcttttg
    38041 atgctgcata gttagcaaat ttgtcttcga tatgacgtga taattcacgt gctgtgataa
    38101 cattttcaat ttggaaagca tgatctttca taccttcgat gccgaatgtt tcactaacga
    38161 aacctaatgc tactactaaa atatcaaagt cataaatacc ttgatttgtt tctacctttt
    38221 tagcatcacg gtcaattttt gttacttctg cttgaacaaa gttcactttg tctttcttca
    38281 agacactttc cacaggatat aatacatctt catagtttag tgtacctgct gatgcttcat
    38341 gtaaccatgt tgcttcatag tgatattcat ttttattaat aagcgtaatt tctgcttctt
    38401 ctgttgatat cgctttttgc aatttagtta cagtttgtaa acctgcataa ccagcaccaa
    38461 gtacaagtac ttttttacga tcttgagcca tttaatttca cctaagcttt catatttttt
    38521 taaccaaatg ctgataatta ctagtaacaa ctggtcatta ctacttttac cacaatgtat
    38581 actagtttat catcattttg ttatttaagt cttttaaatt atgtaaaaac ctgtgatgtt
    38641 cacaaaaaag acatttttaa tccaatacta attctatagc ttttatgtta tattttcaag
    38701 caagattcag tcagattgtg aaaaaattaa ttaatttttt cgtagcctga tttcga
//
LOCUS       DAMQWL010000012        36585 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.012, whole genome shotgun sequence.
ACCESSION   DAMQWL010000012 DAMQWL010000000
VERSION     DAMQWL010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 36585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36585
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.012"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(513..1895)
                     /locus_tag="PF788_000578"
     CDS             complement(513..1895)
                     /locus_tag="PF788_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDG6302857.1"
                     /translation="MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTT
                     VEHAYQLLLDEGYIYSRPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDY
                     AFNLDEIDTKHFPIELFRKYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGV
                     ICDPNQIIIGSSTEQLVNQLVDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDN
                     GINVDEVIKSQKNIVYITPSHQFPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEF
                     RYFGKPIPAIQGLYSRGEKVIYISTFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGN
                     TVPVHMQNLIATFISSGGFERHLNKMRRIYRRKLTYILKRLKPYKEQLDIQGAETGMH
                     FTITVKNGLTLQECLDRANKVKLKLQVYNFDDDQDYKKTPKFILGFGGIDDDALKPHV
                     DALIKSLIIK"
     gene            1999..2886
                     /gene="pdxS"
                     /locus_tag="PF788_000579"
     CDS             1999..2886
                     /gene="pdxS"
                     /locus_tag="PF788_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDG6302858.1"
                     /translation="MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVM
                     ALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYI
                     DESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVE
                     AVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVAT
                     PQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAM
                     KGLDINQLSLEERMQERGW"
     gene            2890..3450
                     /gene="pdxT"
                     /locus_tag="PF788_000580"
     CDS             2890..3450
                     /gene="pdxT"
                     /locus_tag="PF788_000580"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDG6302859.1"
                     /translation="MKIGVLALQGAVREHIRHIELSGHEGIAVKKVEQLEEIEGLILP
                     GGESTTLRRLMNLYGFKEALQNSTLPMFGTCAGLIVLAQDIVGEEGYLNKLNITVQRN
                     SFGRQVDSFETELDIKGIATDIEGVFIRAPHIEKVGQGVDILCKVNEKIVAVQQGKYL
                     GVSFHPELTDDYRVTDYFINHIVKKA"
     gene            complement(3658..4872)
                     /locus_tag="PF788_000581"
     CDS             complement(3658..4872)
                     /locus_tag="PF788_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDG6302860.1"
                     /translation="MHILIGIIGIIFFLALAFLFSSDRKNIRWKYVGILLAIQLIFAF
                     ILLKTTMGIKVIGGISNGFNYLLLKAADGVNFVFGGIQYIDPKQPPFFFSVLLPIVFI
                     SAIIGILQYTKILPLIINVLGFLISKINGMGRLESYNAVAAAILGQSEVFISIKKQLP
                     YIPKQRLYTLTASAMSTVSASIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKV
                     NEEDDKLLVEETEERQQSFFEMLGEYILDGFKVAVIVGAMLIGYIAIIALLNGIVSNI
                     FSTVSGGAISWDFQTLIGFVFAPFAFLVGVPWQDAVQAGSVMATKLLSNEFVAMQALG
                     KLSDLSEHAKGVTSVFLVSFANFSSIGIISGAIKSLNDKKGDTVARFGLKLLFGATLV
                     SFISAAIAGFFI"
     gene            5030..5491
                     /locus_tag="PF788_000582"
     CDS             5030..5491
                     /locus_tag="PF788_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000551761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HDG6302861.1"
                     /translation="MHNMSDIIEQYIKRLFEESNEDVVEIQRANIAQRFDCVPSQLNY
                     VIKTRFTNEHGYEIESKRGGGGYIRITKIENKDATGYINHLLQLIGPSISQQQAYYII
                     DGLLDKMLINEREAKMIQAVIDRETLSMDMVSRDIIRANILKRLLPVINYY"
     gene            5510..6076
                     /locus_tag="PF788_000583"
     CDS             5510..6076
                     /locus_tag="PF788_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000882074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HDG6302862.1"
                     /translation="MLCENCQLNEAELKVKVTSKNKTEEKMVCQTCAEGHHPWNQANE
                     QPEYQEHQDNFEEAFVVKQILQHLATKHGINFQEVAFKEEKRCPSCHMTLKDIAHVGK
                     FGCANCYATFKDDIIDIVRRVQGGQFEHVGKTPHSSHKKIALKRKIEEKNEYLKKLIE
                     IQDFEEAAIVRDEIKALKAESEVQHDDA"
     gene            6066..7073
                     /locus_tag="PF788_000584"
     CDS             6066..7073
                     /locus_tag="PF788_000584"
                     /EC_number="2.7.14.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein arginine kinase"
                     /protein_id="HDG6302863.1"
                     /translation="MTHNIHDNISQWMKSNEETPIVMSSRIRLARNLENHVHPLMYAT
                     ENDGFRVINEVQDALPNFELMRLDQMDQQSKMKMVAKHLISPELIKQPAAAVLVNDDE
                     SLSVMINEEDHIRIQAMGTDTTLQALYNQASSIDDELDRSLDISYDEQLGYLTTCPTN
                     IGTGMRASVMLHLPGLSIMKRMTRIAQTINRFGYTIRGIYGEGSQVYGHTYQVSNQLT
                     LGKSELEIIETLTEVVNQIIHEEKQIRQKLDTYNQLETQDRVFRSLGILQNCRMITME
                     EASYRLSEVKLGIDLNYIELQNFKFNELMVAIQSPFLLDEEDDKSVKEKRADILREHI
                     K"
     gene            7087..9543
                     /locus_tag="PF788_000585"
     CDS             7087..9543
                     /locus_tag="PF788_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HDG6302864.1"
                     /translation="MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEG
                     IAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLHYTPRAKKVIELSMDEARKLHHNF
                     VGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKSNNT
                     PTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIA
                     EGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQAGNVIL
                     FIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRF
                     QPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAI
                     DLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLE
                     KQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHE
                     RVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDD
                     DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHP
                     DVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDY
                     ETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNIN
                     IIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDG
                     KEFKYDIAEQTSETKTPSQA"
     gene            10028..11392
                     /gene="radA"
                     /locus_tag="PF788_000586"
     CDS             10028..11392
                     /gene="radA"
                     /locus_tag="PF788_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499080.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDG6302865.1"
                     /translation="MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPK
                     HGVKTKELAGKVQKLNSIKHETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKS
                     TLLLQICASLSQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
                     EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEG
                     QIAGPRLLEHMVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNP
                     SEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPRRMATGIDHNRLSLL
                     MAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGE
                     VGLTGEVRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWTYPEGIQVIGVTTVHEVLSF
                     ALHS"
     gene            11417..12490
                     /locus_tag="PF788_000587"
     CDS             11417..12490
                     /locus_tag="PF788_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017328539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN/TRAM domain-containing protein"
                     /protein_id="HDG6302866.1"
                     /translation="MNIVKLMVIIIYLIIGSALGIIIIPEIANDLGLQNSSFLKNHYV
                     DGIIGSIFMFLIFGVFIRRVTNAIKGLEHFIMRRSAVEILFATIGLIIGLLISVMVSF
                     ILESIGNSIFNHFIPVIITILLCYFGFQFGLKKRDEMLMFLPENIARSMSQHTKSATP
                     KIIDTSAIIDGRILEVIRCGFIDGNILIPQGVINELQIVADSNDSVKREKGKRGLDIL
                     NELYDLDYPTKVIHPTKTHSDIDTMLLKLAKQYHASIITTDFNLNKVCHVHGIKALNV
                     NDLSEAIKPNVHQGDQLHILLTKMGKEPGQAVGYLDDGTMVVVDNAKNLIGSHVNLEV
                     VSLLQTSSGRIVFAKKIEDTVSL"
     gene            13047..14501
                     /locus_tag="PF788_000588"
     CDS             13047..14501
                     /locus_tag="PF788_000588"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDG6302867.1"
                     /translation="MSDRIRVRYAPSPTGYLHIGNARTALFNYLYAKHYNGDFVIRIE
                     DTDKKRNLEDGETSQFDNLKWLGLDWDESVDKDNGYGPYRQSERQHIYQPLIDQLLAE
                     DKAYKCYMTEEELEAEREAQIARGEMPRYGGQHAHLTEEQRQQFEAEGRQPSIRFRVP
                     QNQTYSFDDMVKGNISFDSNGIGDWVIVKKDGIPTYNFAVAIDDHYMQISDVIRGDDH
                     ISNTPKQIMIYEAFGWEPPRFGHMSLIVNEERKKLSKRDGQILQFIEQYRDLGYLPEA
                     LFNFIALLGWSPEGEEEIFSKEEFIKIFDEKRLSKSPAFFDKQKLAWVNNQYMKQKDT
                     ETVFQLALPHLIKANLIPEVPSEEDLSWGRKLIALYQKEMSYAGEIVPLSEMFFKEMP
                     ALGEEEQQVINGEQVPELMTHLFSKLEALEPFEAAEIKKTIKEVQKETGIKGKQLFMP
                     IRVAVTGQMHGPELPNTIEVLGKEKVLNRLKQYK"
     gene            14924..15571
                     /gene="cysE"
                     /locus_tag="PF788_000589"
     CDS             14924..15571
                     /gene="cysE"
                     /locus_tag="PF788_000589"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDG6302868.1"
                     /translation="MILLKRMRDDIKMVFEQDPAARSTLEVITTYAGLHAVWSHLIAH
                     KLYNQKKYVAARAISQISRFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTI
                     YQGVTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNIKINSNVNIGANSVVLQSVPSYS
                     TVVGIPGHIVKQDGVRVGKTFDHRHLPDPIYEQIKHLERQLEKTRNGEIQDDYII"
     gene            15555..16955
                     /locus_tag="PF788_000590"
     CDS             15555..16955
                     /locus_tag="PF788_000590"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000631968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDG6302869.1"
                     /translation="MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPA
                     INYDVVRRYFEYQGYNVEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGA
                     LNVRKATSNPRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSID
                     DLKVGARIDAGEHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGP
                     TIDIHAGGSDLQFPHHENEIAQSEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILV
                     HDIIKEVDPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATN
                     IENQQTYIDQIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDK
                     FKAVYQIFSDVLGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQ
                     NIILEDTPQGVRFKRG"
     gene            16948..17352
                     /locus_tag="PF788_000591"
     CDS             16948..17352
                     /locus_tag="PF788_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HDG6302870.1"
                     /translation="MDNQQDNHIKLLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKL
                     HQMSKKYVSAKSQAQTLEYLMEQEWFTDEEMDILKRGRNAKSHTKAKNTDVQTYRKSS
                     AIEAVIGFLYLEKREERLEALLNKIITIVNER"
     gene            17360..18106
                     /gene="rlmB"
                     /locus_tag="PF788_000592"
     CDS             17360..18106
                     /gene="rlmB"
                     /locus_tag="PF788_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDG6302871.1"
                     /translation="MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAK
                     DQKIIVQTVPKSKLDFLANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDG
                     LEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKT
                     IDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPM
                     VGHVNSLNASVAASLMMYEVFRKRHDVGEI"
     gene            18106..18630
                     /locus_tag="PF788_000593"
     CDS             18106..18630
                     /locus_tag="PF788_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HDG6302872.1"
                     /translation="MKERYLIIDGYNMIGQSPTLSAIAKENLEEARMQLIDAIANYNA
                     VISDEIICVFDAYDQSGVEREYMYHGVKTIFTKEKETADSFIERYVYELYDKHTKHIT
                     VVTSDMSEQHAIFGSGAYRISSREMWRDLKENEIDVSKSLDDISENKPRTRIPLSSEI
                     LAEFEKIRRGHHKK"
     gene            18711..19280
                     /locus_tag="PF788_000594"
     CDS             18711..19280
                     /locus_tag="PF788_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HDG6302873.1"
                     /translation="MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFN
                     HYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDN
                     LINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
                     AQLMHVKEKVIYNAIQRCKNKIKRYFKMI"
     gene            19395..19538
                     /gene="rpmG"
                     /locus_tag="PF788_000595"
     CDS             19395..19538
                     /gene="rpmG"
                     /locus_tag="PF788_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002451211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDG6302874.1"
                     /translation="MRKIPLNCEACGNRNYNVPKQEGSATRLTLKKYCPKCNAHTIHK
                     ESK"
     gene            19594..19776
                     /gene="secE"
                     /locus_tag="PF788_000596"
     CDS             19594..19776
                     /gene="secE"
                     /locus_tag="PF788_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001074474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDG6302875.1"
                     /translation="MAKKESFFKGVKSEMEKTSWPTKEELFKYTVIVVSTVIFFLVFF
                     YALDLGITALKNLLFR"
     gene            19789..20337
                     /gene="nusG"
                     /locus_tag="PF788_000597"
     CDS             19789..20337
                     /gene="nusG"
                     /locus_tag="PF788_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDG6302876.1"
                     /translation="MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVV
                     IPEEEETQVKDGKAKTTVKKTFPGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSK
                     PNPLLPEEVRFILKQMGLKEKTIDVELEVGEQVRIKSGPFANQVGEVQEIETDKFKLT
                     VLVDMFGRETPVEVEFDQIEKL"
     gene            20518..20940
                     /gene="rplK"
                     /locus_tag="PF788_000598"
     CDS             20518..20940
                     /gene="rplK"
                     /locus_tag="PF788_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012664221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDG6302877.1"
                     /translation="MAKKVDKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA
                     RTQDQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTK
                     DQVREIANSKMQDLNAADEEAAMRIIEGTARSMGIVVE"
     gene            21148..21840
                     /gene="rplA"
                     /locus_tag="PF788_000599"
     CDS             21148..21840
                     /gene="rplA"
                     /locus_tag="PF788_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDG6302878.1"
                     /translation="MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEV
                     AFRLGIDTRKNDQQIRGAVVLPNGTGKSQSVLVFAKGDKIAEAEAAGADYVGEAEYVQ
                     KIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGK
                     VEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTM
                     GPGVKIDTASFK"
     misc_feature    21928..22074
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00557"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L10 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00557"
     gene            22112..22612
                     /locus_tag="PF788_000600"
     CDS             22112..22612
                     /locus_tag="PF788_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDG6302879.1"
                     /translation="MSAIIEAKKQLVDEIAEVLSNSVSTVIVDYRGLTVAEVTDLRSQ
                     LREAGVEYKVYKNTMVRRAAEKAGIEGLDEFLTGPTAIATSSEDAVAAAKVISGFAKD
                     HEALEIKSGVMEGNVITAEEVKTVGSLPSHDGLVSMLLSVLQAPVRNFAYAVKAIGEQ
                     KEENAE"
     gene            22655..23023
                     /gene="rplL"
                     /locus_tag="PF788_000601"
     CDS             22655..23023
                     /gene="rplL"
                     /locus_tag="PF788_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001273587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDG6302880.1"
                     /translation="MANHEQIIEAIKEMSVLELNDLVKAIEEEFGVTAAAPVAVAGAA
                     GGADAAAEKTEFDVELTSAGSSKIKVVKAVKEATGLGLKDAKELVDGAPKVIKEALPK
                     EEAEKLKEQLEEVGATVELK"
     gene            23198..23806
                     /locus_tag="PF788_000602"
     CDS             23198..23806
                     /locus_tag="PF788_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDG6302881.1"
                     /translation="MSHYYDEDPSVISNEQRIQYQLNHHKIDLITDNGVFSKDKVDYG
                     SDVLVQTFLKAHPPGPSKRIADVGCGYGPIGLMIAKVSPHHSITMLDVNHRALALVEK
                     NKKLNGIDNVIVKESDALSAVEDKSFDFILTNPPIRAGKETVHRIFEQALHRLDSNGE
                     LFVVIQKKQGMPSAKKRMNELFGNVEVVNKDKGYYILRSIKA"
     gene            24021..27572
                     /gene="rpoB"
                     /locus_tag="PF788_000603"
     CDS             24021..27572
                     /gene="rpoB"
                     /locus_tag="PF788_000603"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499096.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDG6302882.1"
                     /translation="MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLREG
                     LIEMFRDISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKE
                     TGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDA
                     TIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR
                     NTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTN
                     KKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELH
                     GSVIDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLS
                     GIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQLINI
                     RPVIASIKEFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQMEVRDVHYS
                     HYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQIDYLTAD
                     EEDSYVVAQANSKLDENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPKQVVSAATAC
                     IPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAKHRGRVE
                     HVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVVEYNEI
                     LADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEA
                     RDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAEVKDGDILVGKVTPKGVTELTAE
                     ERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIV
                     QKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVL
                     ELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRI
                     SVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
                     AYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMD
                     EQDNEIEMTDVDDDDVVERKVDLQQNDAPETQKEVTD"
     gene            27736..31332
                     /gene="rpoC"
                     /locus_tag="PF788_000604"
     CDS             27736..31332
                     /gene="rpoC"
                     /locus_tag="PF788_000604"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDG6302883.1"
                     /translation="MKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFG
                     PTKDWECSCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIP
                     SRMGLLLDMSPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAK
                     MGAEGIKDLLEEIDLDEELKLLRDELESATGQRLTRAIKRLEVVESFRNSGNKPSWMI
                     LDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEK
                     RMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSV
                     IAVGPSLKMYQCGLPKEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVL
                     EEVIREHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHV
                     PLSKEAQAEARMLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFN
                     NTNEVLKAYANGFVHLHTRIGVHASSFNNPTFTEEQNKKILATSVGKIIFNEIIPDSF
                     AYINEPTQENLERKTPNRYFIDPTTLGEGGLKEYFENEELIEPFNKKFLGNIIAEVFN
                     RFSITDTSMMLDRMKDLGFKFSSKAGITVGVADIVVLPDKQQILDEHEKLVDRITKQF
                     NRGLITEEERYNAVVEIWTDAKDQIQGELMQSLDKTNPIFMMSDSGARGNASNFTQLA
                     GMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRR
                     LVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFIERIEGRYSKETIHHPETDEII
                     IRPDELITPEIAKKITDAGIEQMYIRSAFTCNARHGVCEKCYGKNLATGEKVEVGEAV
                     GTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGV
                     VEDIKLAKDRQQEIVVKGANETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNYL
                     SVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKLLPGSL
                     VDIHNFTDANREAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAI
                     KGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVKYEKTAKPVAEVESQTEVTE"
     gene            31469..31723
                     /locus_tag="PF788_000605"
     CDS             31469..31723
                     /locus_tag="PF788_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal L7Ae/L30e/S12e/Gadd45 family protein"
                     /protein_id="HDG6302884.1"
                     /translation="MSKEKVARFNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLM
                     TRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIVALIK"
     gene            31821..32234
                     /gene="rpsL"
                     /locus_tag="PF788_000606"
     CDS             31821..32234
                     /gene="rpsL"
                     /locus_tag="PF788_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDG6302885.1"
                     /translation="MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKR
                     GVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKD
                     LPGVRYHIVRGALDTSGVDGRRQGRSLYGTKKPKN"
     gene            32300..32770
                     /gene="rpsG"
                     /locus_tag="PF788_000607"
     CDS             32300..32770
                     /gene="rpsG"
                     /locus_tag="PF788_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDG6302886.1"
                     /translation="MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILY
                     SAFDLVEQRSGRDALEVFEEAINNIMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLR
                     WLVNYARLRGEKTMEDRLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW"
     gene            32893..34974
                     /gene="fusA"
                     /locus_tag="PF788_000608"
     CDS             32893..34974
                     /gene="fusA"
                     /locus_tag="PF788_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017804675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDG6302887.1"
                     /translation="MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH
                     EGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGA
                     VTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAA
                     PIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAV
                     AETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVID
                     YLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGT
                     MTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGE
                     KNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVII
                     GGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGD
                     VHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKL
                     YDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVT
                     SRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSI
                     AEDIIKKNKGE"
     gene            35191..36375
                     /gene="tuf"
                     /locus_tag="PF788_000609"
     CDS             35191..36375
                     /gene="tuf"
                     /locus_tag="PF788_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDG6302888.1"
                     /translation="MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDSVA
                     QSYDMIDNAPEEKERGITINTSHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGG
                     ILVVSAADGPMPQTREHILLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSE
                     YDFPGDDVPVIAGSALKALEGDAQYEEKILELMEAVDTYIPTPERDSDKPFMMPVEDV
                     FSITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIG
                     ALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFR
                     TTDVTGVVHLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEI
                     IK"
BASE COUNT        13143 a         5390 c         7143 g        10909 t
ORIGIN      
        1 cgatgagccg cattgagacc gcaaggtctc ttttttttat gtctaaaacg tcaaaataaa
       61 aagcaaacac aaagaaaaat ggcttggcga agtgaaaacg tttgaatctg acgaaacgag
      121 aaaagaacgc aacgagttta gtagagctaa atgagtaagt gagagccgaa ggagaggaaa
      181 gaagcaagcg attgtcacaa gtcaagaaag gttcttagcg aggatggtag ccaacttacg
      241 ttccgctaga gtagaactgg aaatgataat ttaataatgt acactttcga ttgtctaagt
      301 atgtacaact ttaattttgt gtttatataa atttaaaatg atatcatcga aaacaaaata
      361 ttgtataaat agagaagagc agtaagacgg tatctaattg aaaatgatct tactgctctt
      421 ttatatactt tattgaaata caaaaaggaa attaattatt atacaataga caagctattg
      481 cataagtaac actaactttt atcaaagaag tgttacttta taattaatga ttttattaga
      541 gcgtctacat gcggttttaa agcatcatcg tctataccgc caaagcctaa tataaattta
      601 ggggttttct tatagtcttg atcatcatca aaattataaa cttgtaattt taactttact
      661 ttgtttgctc tatcaagaca ctcttgtaat gttaatccat tttttactgt aattgtaaaa
      721 tgcatacccg tttcagcacc ttgaatatca agctgctctt tgtaaggttt caatcttttt
      781 aaaatatagg ttagttttct acgataaatt cgtctcattt tatttaaatg cctttcaaaa
      841 ccaccggaag atataaacgt tgcaataagg ttttgcatat gaacaggtac agtgttgcct
      901 tcaatgtgat tttgagaatg atattttttc attatagaat agggtaacac catatatgca
      961 actcgacagc taggaaaaat agactttgaa aatgtactga tataaatcac tttttctcct
     1021 cttgaatata gaccttgaat tgctggaatg ggtttgccga aatatctaaa ctcggaatca
     1081 taatcatctt ctataataaa tcgttcttct ttttcttgag cccattgtat taattgagtt
     1141 cgttttttta agtccatcac atatccagtt ggaaattgat gggaaggcgt tatatatact
     1201 atattttttt gtgatttaat aacttcatct acgtttattc cattatcttc aacttcaatt
     1261 tgttcatatt caacttgttt tttatctaaa atatttttga ttggtggata actaggtttt
     1321 tcgataataa atgttgaagt ataaagtaaa tcgactaatt gatttactaa ttgttcggta
     1381 gatgagccaa ttataatttg attaggatca caaattacgc cacgattagt aaataaataa
     1441 aatgccagtt gaaaccgcaa atgtaattct ccttgaaaat gtcctctacg taattgattt
     1501 aaatgatttg tatcataaag atctttggaa tactttctga aaagttctat agggaaatgt
     1561 ttcgtatcta tttcatccaa attaaaagca taatcataag cttcatcact cgcttttggt
     1621 ttatatgaat catcatcaaa aagagagggg ataggttgat tgtttaaaat tgttaaagat
     1681 tcaatttcgg acacaaaata tccagagcga ggtcttgaat aaatgtaacc ttcgtctaat
     1741 agaagttgat atgcatgctc tacggttgtt tggctaatag ataaatgttt gcttaattgt
     1801 cttttagaat aaaatttatc gccttcttta aattgacctt caattatttg tttttttaat
     1861 ttttcataaa gttgatggta taaagtgttt ttcaatttta taactgacct cctaaattta
     1921 tcttattttg taccttttta aatatcagtt tatacattac aatgtattta atcaacttga
     1981 aaaggggttt tatgtataat gagtaaaatt attggatcag acagagtcaa aagaggtatg
     2041 gctgaaatgc aaaaaggcgg cgttattatg gatgtcgtta atgctgagca agcaagaatt
     2101 gcagaagaag ctggcgcggt agcagttatg gcattagaac gagtaccttc tgatattaga
     2161 gctgctggtg gtgttgcacg tatggcaaac cctaaaattg tagaagaagt aatgaatgct
     2221 gtttctattc cagtcatggc taaagcacgt attggtcata tcactgaagc aagagtatta
     2281 gaggcgatgg gtgttgacta tattgatgaa tcagaagtgt taacaccagc agatgaggaa
     2341 tatcacttaa gaaaagatca atttacagta ccatttgtat gtggatgtcg taatttaggt
     2401 gaagctgcgc gtagaattgg tgaaggtgct gctatgttac gtactaaagg tgaaccaggt
     2461 acaggtaata ttgttgaagc tgtaagacat atgagacaag ttaattcaga agttagtcga
     2521 ttgactgtaa tgaatgatga tgagattatg acttttgcga aagatatcgg tgcgccttat
     2581 gaaattttaa aacaaattaa agacaatggt cgtttaccgg tagttaactt tgcagctggt
     2641 ggcgttgcga ctcctcaaga tgctgcttta atgatggaat taggtgctga cggtgtattc
     2701 gttggatcag gtatttttaa atcagaagat ccagaaaaat ttgctaaagc aattgttcaa
     2761 gcaacaacac attaccaaga ctatgaacta attggaagat tagcaagtga acttggcact
     2821 gctatgaaag gtttagatat caatcaatta tcattagaag aacgtatgca agagcgtggt
     2881 tggtaagata tgaaaatagg tgtattagca ttacaaggtg cagtacgtga acatattaga
     2941 catattgaat taagtggtca tgaaggtatt gcagttaaaa aagttgaaca attagaagaa
     3001 atcgagggct taatattacc tggtggcgag tctacaacgt tacgtcgatt aatgaattta
     3061 tatggattta aagaggcttt acaaaattca actttaccta tgtttggtac atgcgcagga
     3121 ttaatagttc tagcgcaaga tatagttggt gaagaaggat accttaacaa gttgaatatt
     3181 actgtacaac gaaactcatt cggtagacaa gttgacagct ttgaaacaga attagatatt
     3241 aaaggtatcg ctacagatat tgaaggtgtc tttataagag ccccacatat tgaaaaagta
     3301 ggtcaaggcg tagatatcct atgtaaggtt aatgagaaaa ttgtagctgt tcagcaaggt
     3361 aaatatttag gcgtatcatt ccatcctgaa ttaacagatg actatagagt aactgattac
     3421 tttattaatc atattgtaaa aaaagcatag cttaatgtat gctaaatcaa cgaattattg
     3481 atatttatag atttgttgag aagaaaatat ctccttcaaa cttagctttg gaggagttat
     3541 tttttatgtc aaaattaaaa atgataaaaa ataaagctat acataagaaa aaaacccttc
     3601 aaagagactg agaatagtca aaattttgaa ggggttaatt cgatgttgat gtatttgtta
     3661 aataaagaat ccagcgattg cagctgaaat gaaagatact agtgttgcac cgaataataa
     3721 tttcaaacca aagcgggcaa ctgtatctcc ttttttgtca ttaagtgatt taatcgcacc
     3781 tgaaataata ccgatagagc taaagttagc aaatgatact aagaatacag atgtaacacc
     3841 ttttgcgtgt tcagataaat cactaagttt accaagtgct tgcattgcta caaattcgtt
     3901 agataatagt tttgtcgcca taactgaacc ggcttgaact gcatcttgcc atggcacacc
     3961 gactaagaat gcaaatggtg caaagacaaa accaattaat gtttggaaat cccaagaaat
     4021 agcgccacct gaaactgtac taaagatatt gcttacaatt ccatttaata gagcgataat
     4081 ggcaatgtat ccgattaaca ttgcgcctac aatgacagct actttaaatc catctaaaat
     4141 atattctcct agcatttcga agaatgattg ttgtctttct tcagtttctt caactaataa
     4201 tttgtcatct tcttcattaa ctttataagg gttaataatt gaagcgatga tgaaaccacc
     4261 aaataagttt aagacaacag ccgttacaac atatttaggt tcaattaagg taaagtatgc
     4321 accgataatt gaagcagaaa cagtcgacat tgctgaagct gttaatgtgt ataaacgttg
     4381 cttaggtatg tatggtaatt gttttttaat tgaaataaat acttcagatt gtcccaaaat
     4441 tgctgcagca actgcattgt atgattctaa acgtcccata ccattaattt tagaaattaa
     4501 gaatcctaaa acattaatga ttaaaggtaa aatctttgtg tattgaagga taccgataat
     4561 cgctgaaata aatacgatag gtaataatac actgaagaag aatggtggtt gcttaggatc
     4621 gatatattga ataccaccga atacaaagtt aacaccatct gctgctttta ataataagta
     4681 gttaaaaccg tttgaaatac caccaataac cttgattccc attgtagttt taagcaagat
     4741 aaatgcaaag ataagctgaa ttgcaagtaa aattcctaca tatttccagc gaatattttt
     4801 cctgtctgag ctaaatagaa acgcaagtgc taaaaagaag ataattccga taatcccaat
     4861 tagaatatgc atatatttct cattccttta gttttttcta caatctatca tacaataaaa
     4921 tggaagggct aacatcataa atttttgaaa atataaaaac aaattaattg aaaaaggtca
     4981 aaataggtca tataatatag tcaaagaagg tcaaaaaggg gtgatataca tgcacaatat
     5041 gtctgacatc atagaacaat acatcaaacg tttatttgaa gagtcgaatg aagatgtcgt
     5101 tgaaattcag agagcgaata tcgcacagcg ttttgattgc gtaccatcac aattaaatta
     5161 tgtaatcaaa acacgattca ctaatgaaca tggttatgaa atcgaaagta aacgtggtgg
     5221 tggtggttac atccgaatca ctaaaattga aaataaagat gcaacaggtt atattaatca
     5281 tttgcttcag ctgattggac cttctatttc tcaacaacaa gcttattata ttattgatgg
     5341 gcttttagat aaaatgttaa taaatgaacg tgaagctaaa atgattcaag cagttattga
     5401 tagagaaacg ctatcaatgg atatggtttc tagagatatt attagagcaa atattttaaa
     5461 acgtttgtta ccagttataa attattacta aatgaaatga ggtgttgaag tgctttgtga
     5521 aaattgtcaa cttaatgaag cggaattaaa agttaaagtt acaagtaaaa ataaaacaga
     5581 agaaaaaatg gtgtgtcaaa cttgtgctga gggacaccat ccgtggaatc aagctaatga
     5641 acaacctgaa tatcaagaac atcaagataa tttcgaagaa gcatttgttg ttaagcaaat
     5701 tttacaacat ttagctacga aacatggaat taattttcaa gaagtagcgt ttaaagaaga
     5761 aaaacgttgc ccatcatgtc atatgacttt gaaagatatt gcacatgttg gtaaatttgg
     5821 gtgtgctaat tgttatgcaa catttaaaga tgacatcatt gatatcgtcc gcagagttca
     5881 aggtggacaa tttgagcacg ttggaaagac accacattct tcacataaaa agatagcttt
     5941 aaagcgaaaa atcgaagaaa agaatgaata tttgaaaaaa cttattgaaa tccaagattt
     6001 tgaggaagca gccattgtta gagatgaaat taaagcacta aaagctgaga gtgaggtgca
     6061 acatgatgac gcataatatt catgataata tcagccaatg gatgaaaagt aatgaagaaa
     6121 caccaattgt tatgtcttct agaattcggt tagcgcgtaa tttagaaaat catgtgcatc
     6181 cactaatgta tgctactgaa aatgatggat ttagagttat aaatgaggta caagatgcct
     6241 tgccaaactt tgaattaatg cgtcttgatc aaatggatca acaaagtaaa atgaaaatgg
     6301 ttgcaaagca tttgattagt cctgaactaa taaaacaacc agcagccgca gtattagtga
     6361 atgacgatga atctttaagt gtcatgataa atgaagagga ccatattcgt attcaagcta
     6421 tgggaactga cacgacatta caggctttat ataatcaagc ttcatcaatt gatgatgaat
     6481 tagatcgaag ccttgatata agttatgatg aacaacttgg ttatttaact acatgtccta
     6541 ccaatatagg tactggtatg agagcaagcg tgatgctaca tttgccaggt ctatctatta
     6601 tgaaaagaat gacacggatt gctcaaacca ttaatcgttt tggatataca atcagaggta
     6661 tttacggtga aggttcgcaa gtttatggac atacttatca agtatccaac caacttacac
     6721 ttggtaaatc tgagttagaa atcatagaaa cattaacaga agttgttaat caaatcattc
     6781 atgaagaaaa acaaatacga caaaagttag acacttataa tcaattagaa acacaagacc
     6841 gtgtttttcg ctcgctaggt attttacaaa actgtagaat gataactatg gaagaggctt
     6901 cttatagatt aagcgaagtt aaacttggta tagatttaaa ttacattgaa ttacaaaact
     6961 ttaaatttaa tgaattgatg gtagctatac agtcaccatt tttattagat gaagaagatg
     7021 acaaatctgt aaaagaaaaa cgagcagata tactaagaga acatataaag taggaggtca
     7081 ttatttatgt tatttggtag attaactgag cgtgcacagc gcgtattagc acatgcccaa
     7141 gaagaagcaa ttcgtttaaa tcattcaaat ataggaacag aacacctatt attggggtta
     7201 atgaaagaac ctgaaggaat tgctgcaaaa gtattagaaa gttttaatat cactgaagat
     7261 aaagtaattg aagaagttga aaaattaatc ggacatggtc aagatcatgt tggtacattg
     7321 cattatacac ctagagctaa aaaagtcatt gaattatcga tggatgaagc tagaaaatta
     7381 catcacaatt ttgttggaac ggaacatatt ttattaggct tgattcgtga aaatgaaggt
     7441 gttgcagcaa gagtttttgc aaatctagat ttaaatatta ctaaagcacg tgcacaagtt
     7501 gtgaaagctt taggaaaccc tgaaatgagt aataaaaatg cacaagctag taagtcaaat
     7561 aatactccaa ctttagatag tttagctcgt gacttaacag tcattgccaa agacggtaca
     7621 ttagatcctg ttataggacg tgataaagaa attacacgtg taattgaagt attaagtaga
     7681 cgtacgaaaa acaatcctgt gcttattgga gagccaggtg ttggtaaaac tgctattgct
     7741 gaaggtttag cgcaagccat agtgaataat gaggtaccag agacattaaa agataagcgt
     7801 gttatgtctt tagatatggg aacagtagtt gcaggtacta aatatcgtgg tgaatttgaa
     7861 gagcgtctga aaaaggttat ggaagaaatc caacaagcag gtaatgtcat cctatttatt
     7921 gatgagttgc atactttagt tggtgctggt ggtgctgaag gtgctatcga tgcttcgaat
     7981 attttgaagc cggcattagc acgtggtgaa ttacaatgta ttggtgctac tacattagat
     8041 gaatatcgca aaaatattga aaaagacgcg gctttagaac gtcgtttcca acctgtacaa
     8101 gttgatgaac cttcagtagt agatacagtt gctattttaa aaggattaag agatcgttac
     8161 gaagcacacc atcgtattaa tatttcagac gaagctattg aagcagctgt taaattaagt
     8221 aacagatacg tttcagatcg tttcttacca gataaagcaa ttgatttaat tgatgaagca
     8281 agttctaaag taagacttaa gagtcatacg acacctaata atttaaaaga aattgaacaa
     8341 gaaattgaaa aagttaaaaa tgaaaaagat gccgcagtac atgctcaaga gtttgaaaat
     8401 gctgctaacc tgcgtgataa acaaacaaaa cttgaaaagc aatatgaaga agctaaaaat
     8461 gaatggaaga atgcacaaaa tggcatgtca acttcattgt cagaagaaga tattgctgaa
     8521 gttattgcag gatggacagg tatcccatta actaaaatca atgaaacaga atctgaaaaa
     8581 cttcttagtc tagaagatac attacatgag agagttattg ggcaaaaaga tgctgttaat
     8641 tcaatcagta aagcggttag acgtgcccgt gcagggttaa aagatcctaa acgaccaatt
     8701 ggtagcttta tcttccttgg accaactggt gttggtaaaa ctgaattagc tagagcttta
     8761 gctgaatcaa tgtttggcga tgatgatgcg atgatccgtg tagacatgag tgaatttatg
     8821 gaaaaacacg cagtgagccg attagttggt gctcctccag gatatgttgg tcatgatgat
     8881 ggtggacaat taactgaaaa agttagacgt aaaccatatt ctgtaatttt atttgatgaa
     8941 attgaaaaag ctcatccaga tgtatttaat attctattac aagttttaga tgatggacat
     9001 ttgacagata caaaaggacg tacagttgat ttcagaaata caattatcat aatgacatca
     9061 aacgttgggg cacaagaatt acaagatcaa cgatttgctg gattcggtgg ttcaagtgat
     9121 ggacaagatt atgaaacaat tcgaaaaacg atgttaaaag aattaaaaaa ttcattccgt
     9181 ccagaatttt taaaccgtgt agatgatatc attgtattcc ataaactaac aaaagaagaa
     9241 ttaaaagaaa ttgtaacaat gatggttaat aaattaacaa atcgattatc tgaacaaaac
     9301 ataaatatta ttgtaactga taaagcgaaa gacaaaatcg cagaagaagg atatgatcca
     9361 gaatatggtg caagaccatt aattagagcg atacaaaaaa ctatcgaaga taatttaagt
     9421 gaattaatat tagatggtaa tcaaattgaa ggtaagaaag ttacagtaga tcatgatggt
     9481 aaagagttta aatatgacat tgctgaacaa acttcagaaa ctaaaacacc atcgcaagca
     9541 taattataaa acagtccaaa acaaattaaa gttttgggct gtttttttag tagcattgaa
     9601 ctatagaaat tcgtgaaagt atccatcaac gaaacaatct aataaaacaa tcatcaaagg
     9661 atagttaaga attatatgta acaagttaat gagcctacag cgatagcata aaggtatgaa
     9721 tttttataaa ggttttttgt ttgaagatac tagcaactta cgtcaaaata aaataggtct
     9781 atataatatt gtgataaatc tagagaaaag agtttactaa gaaattatta agattttatc
     9841 tttgaaagat accgactatc aacatgatgt aagtttattt tataatattc ataaaaaata
     9901 aatctggtaa aacagtttgc gttagtagtc atgttaaaat acaaacaaat gtaactcaca
     9961 tttaatttgt cataatggga atgtgcgttt aaaatagatt tgttcaaagg aaagtggagg
    10021 tgcaattttg gccaagaaaa aagtgatttt tgaatgtatg gcttgtggtt atcaatctcc
    10081 taaatggatg gggaaatgtc ctaattgtgg cgcttggaat caaatggagg aaattgttga
    10141 aaaagcagcc aatcctaaac atggagttaa aaccaaggaa ttagcaggta aagtacaaaa
    10201 attaaatagt attaaacatg aaacaacgcc gagagtgtta acagattcag cagaattcaa
    10261 ccgtgtatta ggtggaggta ttgtgagcgg atcgttagta cttattggtg gggatccagg
    10321 tattggtaag tcaacgttac ttttacaaat ttgtgcatcg ttatctcaaa agaaaaaagt
    10381 actatatatt actggagaag aatcgcttag tcagactaaa ttacgtgcag agcgattaga
    10441 tgaagattca agtgaattgc aagtattagc tgaaacagat cttgaagtta tttatcaaac
    10501 agtaaaagaa gaacaacctg atttattagt agtggattcg attcaaacaa tatatcatcc
    10561 tgaaatcagc tctgcgccag gttctgtttc acaagttcgt gaaagtacac aaagtttaat
    10621 gaatattgct aaacaaatga acattgcaac ttttatagtg ggtcatgtaa cgaaagaagg
    10681 tcaaattgct ggcccaagat tgctagaaca catggttgat actgtgcttt attttgaagg
    10741 cgatgaacac cacgcatatc gaattttgcg agctgttaaa aaccgttttg gttcaacgaa
    10801 tgaaatggga atcttcgaaa tgaagcaaag tggattaaaa ggtgtaaata atccatctga
    10861 aatgttttta gaagaacgtt caacaaatgt tccaggttca acaattgttg caaccatgga
    10921 gggaaccaga ccacttttaa tagaagttca agcgctggta actccaacga cttttaacaa
    10981 tccgagacga atggcaacag ggattgatca taatcgatta agtttgttga tggctgtttt
    11041 ggaaaagaaa gaaaattatc tattacaaca acaagatgct tatatcaaag tagctggcgg
    11101 tgtaaagtta acggagccag cagttgattt aagtgtaatt gtagcaactg catctagctt
    11161 taaagataaa gctgtcgacg gattagattg ctatattgga gaagttggtt taacgggtga
    11221 ggtacgtcgt gtatctcgga tagaacaacg cgtgcaagag gctgcaaaac taggtttcaa
    11281 acgtgtaatt attcctaaaa ataatatagg cggatggaca tatcctgaag gtatacaagt
    11341 aataggtgta actactgtac atgaagtatt gtcatttgct cttcattcat aaaacatcaa
    11401 gaaaggagga cattgtgtga atatcgttaa actaatggtt attattattt acttaattat
    11461 tgggagcgca ttaggaataa ttattattcc tgaaattgca aatgatcttg gattacaaaa
    11521 ctccagcttt ttaaaaaatc actatgtaga tggcattatc ggtagtattt ttatgttctt
    11581 aatttttggt gtatttatta gacgagttac taacgctata aaaggtttag aacattttat
    11641 tatgcgtaga agtgctgttg aaatactatt cgcaacaata ggtttaataa tcggattact
    11701 tatttctgtt atggtgtcgt ttatattaga atcaattggc aactctattt ttaatcattt
    11761 cattcctgtc ataattacga tattactatg ttatttcggt ttccaatttg gccttaaaaa
    11821 acgagatgaa atgttaatgt ttttacctga gaatatagcg cgttccatgt cacaacatac
    11881 taaaagtgct acgccaaaaa ttatcgacac aagcgcaatt attgatggtc gtattttaga
    11941 agtcattcgt tgcggtttta tcgatggcaa tattttaatt ccacaaggtg ttattaatga
    12001 attacaaatt gttgcagatt caaatgacag tgttaaacgt gaaaagggta aaagaggctt
    12061 agatatttta aatgaattgt atgatttaga ctatcctaca aaggttatac atccaactaa
    12121 aacacatagt gatattgata cgatgttatt aaaattagca aaacaatatc atgcaagtat
    12181 tataacgaca gatttcaacc taaataaagt ttgtcatgta catggtatca aagcattaaa
    12241 tgttaatgat ttatcagaag caatcaaacc taatgtacat caaggtgatc aactgcatat
    12301 tttactgaca aaaatgggta aggagcctgg tcaggcagta ggatatctag atgatggtac
    12361 gatggtagtt gttgataatg ctaaaaatct tattggcagt catgtcaatt tagaagtagt
    12421 cagcttattg caaacatctt caggaagaat tgtttttgct aaaaaaatcg aagatacagt
    12481 atcattataa aaactgtagt tgacgaaaac aaaatagata ttaaaaggta tatgaaatgg
    12541 cgaagtttgt aatttgaagt ataactataa ataaatgcaa aacatattag ttatcaaaaa
    12601 atacaaatag tgctaatata tcattgaaac aagttcatta agtgttaaat tttagatatt
    12661 aataaagtta ttcttatagc aatcaagaca tacaaaatta gaatcaattt taacgtattt
    12721 gaatagttaa tttgaagttt aatttcacag tacataatat tcatttttaa gtcgttgaaa
    12781 tgtttatgta gtgcagtctt gattcttagg gatagctttt ttaaagtgtt gaaaaaacaa
    12841 cagctttcta tttaaaattt aagcatatta cccagggaat tatgttatga ttaaacaatg
    12901 aaattatttt aaggtcatgt taaaaagcat tgtttcgttt taacaataag acgagttaga
    12961 catttgttat gacggtcgaa gatagcaaat gaacaattta tatgaactaa cttgaaaatc
    13021 tgatatttaa tttaggagtg aaaaaaatga gcgatcgtat aagagtaaga tatgcaccaa
    13081 gtccaactgg gtatcttcat attggtaatg caagaacagc attattcaat tacttgtatg
    13141 ctaaacatta caacggagat tttgtgattc gaattgaaga tactgataaa aaacgtaatt
    13201 tagaagatgg agaaacatca caatttgata atcttaaatg gttaggatta gattgggatg
    13261 agtctgtaga taaagacaat ggctacggac catatcgtca atctgaacgt caacatatct
    13321 accaaccatt aatagatcag ttactagcag aagataaagc atataaatgc tatatgacag
    13381 aagaagaatt agaagctgaa cgtgaagcgc aaatcgctcg tggtgaaatg cctcgctatg
    13441 gtggtcaaca tgcgcatttg actgaagaac aacgtcaaca atttgaagca gaaggacgcc
    13501 aaccatcaat tcgtttccga gtacctcaaa accaaacgta ttcatttgat gatatggtaa
    13561 aaggaaatat ttcatttgat tcaaatggta ttggtgactg ggttatcgta aaaaaagatg
    13621 gcattccaac gtacaatttt gcagtagcta tagatgatca ttacatgcaa atttcagatg
    13681 taattcgtgg tgatgatcat atttcaaaca cgcctaaaca aattatgatt tatgaagcat
    13741 ttggctggga gccacctcgt tttggtcata tgtcattaat tgttaatgaa gaacgtaaaa
    13801 agttaagtaa acgtgatggg caaattttac aatttattga gcaatatcgt gacttaggtt
    13861 atttacctga agcgttattt aattttattg cgttattagg ttggtctcct gaaggtgaag
    13921 aagaaatctt ttctaaagaa gaatttatca aaatctttga tgaaaagcgt ttgtcaaaat
    13981 caccagcatt tttcgataag caaaaattag catgggttaa taaccaatat atgaaacaaa
    14041 aagatactga aacagtattc caattagcat tacctcattt aattaaagca aatttgattc
    14101 ctgaggtgcc gtcagaagag gatttatctt ggggacgcaa attaattgcg ctttatcaaa
    14161 aagaaatgag ttatgccggt gaaattgtac ctttatcaga aatgttcttt aaagaaatgc
    14221 cagctcttgg tgaagaagaa caacaagtga ttaatggaga gcaagtacca gagttaatga
    14281 cgcacttatt cagtaaatta gaagcacttg aaccatttga agcggctgaa attaaaaaga
    14341 caattaaaga agttcaaaaa gaaacaggaa taaaaggcaa gcaattattt atgcctattc
    14401 gtgttgctgt aacaggccaa atgcatggtc ctgaattacc aaatacaatt gaagtacttg
    14461 gtaaagaaaa agtgctaaac cgtttaaaac aatataagta atgaaataga caagatcaag
    14521 gtagtatata cttgaatttt ataacgtaac cacatatgat aaagttgtat taacaaatta
    14581 caacaatatg aataaagtat tttatataaa acgaaggatt agtaattaaa tttatacgat
    14641 gcagagagtg tacggttgct gtgagtacaa cgtagaaatt aatgaatgca ccttcgtaaa
    14701 atgaattaaa tatataatga gagtgatgag cattaagttg acttagtttc cttgataatt
    14761 tggaagcgcc cgcaatatta ttaatgttat tcgctaaatt cagagtggaa ccgtgcggaa
    14821 gcgcctctaa caatacaact tgtatgttag tggtgctttt ttgatattta atttcgcagg
    14881 tacttcaatt atgtatttac gtagttcaat cattgaggag gaaatgatct tgttaaaaag
    14941 aatgagagac gatataaaaa tggtatttga gcaggatcca gcggcacgtt caacattaga
    15001 agtcattaca acgtatgcag gtttacatgc agtttggagt catttgattg cacataagtt
    15061 atacaaccaa aaaaaatatg ttgcagcacg cgcgatatct caaatttcaa gatttttcac
    15121 aggtatagaa atccatccag gtgctaaaat tggaaagcgt ctatttatag atcatggtat
    15181 gggcgttgta ataggagaaa catgtacaat tggtgataat gtgacaatct atcaaggcgt
    15241 gacacttggt gggacaggga aagaaagagg gaaaagacac ccagatatag gagacaatgt
    15301 tttaatagca gccggtgcga aagttttagg aaatattaaa ataaattcaa atgtaaatat
    15361 tggtgcaaat tcagttgttt tacaatcagt tccaagttat tcaacggttg ttggtatacc
    15421 aggacatatt gttaagcaag atggtgttcg agttggaaaa acatttgatc atcgccatct
    15481 acctgatcca atttatgaac aaattaagca tttagaacga caacttgaaa agactaggaa
    15541 tggagagatt caagatgatt acattatata atacgcttac acgtcaaaaa gaagtgttca
    15601 agcctataga accagggaaa gtaaaaatgt atgtatgtgg tcctactgta tataactaca
    15661 ttcatattgg taacgcaaga ccagcaatta attatgacgt agtgagacgt tactttgaat
    15721 accaaggata taatgtagaa tatgtatcaa attttacaga cgtagatgat aaattaatta
    15781 aacgttctca agaattaaat cagtctgttc ccgaaattgc agaaaaatat atcgctgctt
    15841 ttcatgaaga tgttggtgcg ttaaatgtta gaaaagcgac ttcaaatcca agggtaatgg
    15901 accatatgga tgacattatt caatttatta aagatttggt ggatcaaggt tatgcatatg
    15961 aaagtggtgg cgatgtttac tttagaacac gtaaatttga aggttatggt aaattaagtc
    16021 atcaatccat agatgactta aaagtgggtg ctcgtataga tgcaggagag cataaagaag
    16081 atgcacttga ttttacattg tggaaaaaag cgaagcctgg cgagattagt tgggatagcc
    16141 catttggtga aggtagacca ggatggcata tagaatgttc tgtaatggca tttcatgagc
    16201 taggacctac aattgatata catgcgggtg gttcagattt acaatttcca catcatgaaa
    16261 atgaaatagc acaatcagaa gcacataatc atgcgccatt tgctaattat tggatgcata
    16321 atggtttcat taatattgat aatgaaaaaa tgagtaaatc actaggcaac tttattttag
    16381 ttcacgatat tattaaagaa gttgatccag atgtactaag attctttatg attagcgtac
    16441 attatagaag cccaattaac tataatctag aattggtaga atcagcacgt agtggactag
    16501 agcgtattcg caatagttat caattaattg aagagcgcgc acaaattgct actaatattg
    16561 aaaatcaaca gacatatatt gatcaaattg atgcgatttt aaatcgtttt gaaacagtta
    16621 tgaatgatga ttttaataca gctaatgcaa ttacagcttg gtatgattta gcaaaacttg
    16681 cgaataaata tgtactagag aacacaacat caacagaagt aattgataaa tttaaagcag
    16741 tttatcaaat tttcagcgat gttttaggtg taccgttaaa atctaaaaat gcagatgaat
    16801 tattggatga agatgttgaa aaattaatcg aagagcgtaa tgaagcaagg aaaaacaaag
    16861 attttgcacg agcagatgaa attcgagaca tgctgaaatc acaaaacatt atattagaag
    16921 acacacctca aggggttaga tttaaacgtg gataatcaac aagataatca cattaaatta
    16981 ttgaatccat tgaccttagc atatatggga gacgcagtct tagatcaata tgtacgtacc
    17041 tatatcgttt taaagcttaa aagtaagcct aataaactac atcaaatgtc taaaaaatat
    17101 gtatctgcca aaagtcaggc gcaaacgtta gaatatttaa tggagcaaga atggtttaca
    17161 gacgaagaaa tggatatttt gaagcgaggg cgtaacgcga aaagtcatac taaagctaaa
    17221 aacactgatg ttcaaacata tcgtaaaagt tcagcgatag aagcagtgat aggttttctt
    17281 tatttagaaa aaagagaaga acgattagag gcattattaa ataaaataat aacaatagta
    17341 aacgaaaggt agtgacgatg tggaagatac ggttattgtt ggtaggcatg ctgttagaga
    17401 agcgattatt actgggcatc cgataaataa gatattgatt caagaaggta ttaaaaagca
    17461 acaaattaat gaaattttaa aaaatgcaaa agatcaaaaa atcattgttc aaactgtacc
    17521 aaaatctaaa ttagattttt tagcaaatgc accacatcag ggtgttgcag cgcttattgc
    17581 accatatgaa tatgctgact tcgatcaatt tttaaaacag caaaaagaaa aagaaggttt
    17641 attgacagta cttatattag acggcttaga agacccacat aacttgggat caattttaag
    17701 aacagccgat gcaacgggag ttgatggtgt tattattcct aaacgtcgtt cagttacact
    17761 aacgcaaaca gttgcaaaag cctcaacagg tgcaattgaa catgtaccag ttattcgagt
    17821 gacaaattta gctaaaacta tcgatgaact aaaagataat ggcttttggg tagctggcac
    17881 tgaagctaat aatgcaacag attatagaaa tctagaagcg gacatgtcat tggctattgt
    17941 aattggtagc gaaggacagg gtatgagtcg cctagtaagt gataaatgcg atttttatat
    18001 taagattcca atggttggac atgtaaacag tttgaatgct tcggttgcag caagtttaat
    18061 gatgtacgaa gtatttcgaa aaagacatga tgttggagaa atataatgaa agaacgttac
    18121 ttaatcattg atggatacaa tatgatagga caatcaccaa cgctaagcgc cattgcaaaa
    18181 gagaatttag aagaagctag aatgcaatta atagatgcaa ttgcaaatta taatgcagtt
    18241 atttcagatg aaattatttg tgttttcgat gcttatgacc aatcgggtgt tgaaagagaa
    18301 tacatgtatc atggcgttaa aacgattttt accaaggaaa aagaaacagc tgatagtttc
    18361 atagaacgtt atgtttatga actttatgac aagcatacta agcatattac agttgtaaca
    18421 agtgatatga gtgagcaaca tgctatcttt ggatcaggtg catatagaat atcatctcgc
    18481 gaaatgtgga gagatttaaa agaaaatgaa attgatgtga gtaaatcatt agatgatata
    18541 agtgaaaaca agccaagaac tcgaattccg ttatcttctg aaatccttgc agaatttgaa
    18601 aaaatacgaa gaggacatca taagaaatga catttccgtc atcttgaaat tttgaatgta
    18661 acaatattaa actaacctta aattttagat agaaggggtt agtttaatat ttgaaatacg
    18721 atttgacaac tcaagacagt acaatcaaac gtaacaatgc aataaatgat aaagacttcg
    18781 aaaagttagt aatggatcta caaccattaa ttattcgacg catcaaaaca tttggattta
    18841 atcattatga tttagaagac ttatatcaag aaatacttat acggatgtat aggtcggtcc
    18901 aaacatttga ttttagtgga gagcagcctt tcacaaatta tgttcaatgt ttaattacgt
    18961 ctgtaaagta tgattatttg agaaaatatt tagctacaaa taaaagaatg gataatttga
    19021 ttaatgaata tagagttacg tatccatgtg caataaagcg ttttgatgtt gaaaacaatt
    19081 atttgaataa attagcaatt aaagagttga tttgtcagtt taagtatttg agtgcatttg
    19141 aaaaagatgt catgtattta atgtgtgaac aatataagcc gagagaaatt gctcaattga
    19201 tgcatgtaaa agagaaagtg atttataatg ccatacaacg atgtaaaaat aaaataaaac
    19261 gttatttcaa aatgatttga aaagcgcctt aggacgtgaa ttgaattata acgtgttact
    19321 tactgatggt ttgacatttg ttataaattt tatgtatagt atactggtat tataatgaat
    19381 aaaggtgaat tattgtgaga aaaatacctt taaattgtga agcttgtggc aatagaaatt
    19441 ataatgttcc taagcaagaa ggctcggcaa caagattaac cttaaagaaa tattgtccaa
    19501 aatgtaacgc gcacacaatt cataaagaat cgaaataaat acattcgaaa taatactttg
    19561 ataatatgtt caaaggattt ggaggttgag cagatggcta aaaaagaaag tttctttaaa
    19621 ggcgttaagt ctgaaatgga aaaaacaagt tggccgacga aagaagagct atttaaatat
    19681 actgtaattg tagtttctac tgttatattc ttcttagtct ttttctatgc cttagattta
    19741 ggaattacag cattgaaaaa tttattattt cgttagagga gtgaagacat gtctgaagaa
    19801 gttggcgcaa agcgttggta tgcagtgcat acatattctg gatatgaaaa taaagttaaa
    19861 aagaatttag aaaaaagagt agaatctatg aatatgactg aacaaatctt tagagtagtc
    19921 ataccggaag aagaagaaac tcaagtaaaa gatggcaaag ctaaaacgac tgttaaaaaa
    19981 acattccctg gatatgtttt agtggaatta atcatgacag atgaatcatg gtatgtggta
    20041 agaaatacac caggcgttac tggttttgta ggttctgcag gtgcagggtc taagccaaat
    20101 ccattgttac cagaagaagt tcgcttcatc ttaaaacaaa tgggtcttaa agaaaagact
    20161 atcgatgttg aactcgaagt tggcgagcaa gttcgtatta aatcaggtcc atttgcgaat
    20221 caagttggtg aagttcaaga aattgaaaca gataagttta agctaacagt attagtagat
    20281 atgtttggcc gagaaacacc agtagaagtt gaattcgatc aaatagaaaa gctttaatta
    20341 acaattaaag ttattaaact aaccaaaaga taaaaaagag tattgatttt ttaattagaa
    20401 aagtgttaaa attatgtggt cgcgctttta gagcgcccat ttcgtcacga aatgttaaga
    20461 gtgggagggc aaaactgagc cctgtgacca catcacgata tcaaggaggt gcacatcgtg
    20521 gctaaaaaag tagataaagt tgttaaatta caaattcctg caggtaaagc gaatccagca
    20581 ccaccagttg gtccagcatt aggtcaagca ggtgtgaaca tcatgggatt ctgtaaagag
    20641 ttcaatgcac gtactcaaga tcaagcaggt ttaattattc cggtagaaat cagtgtttat
    20701 gaagatcgtt catttacatt tattacaaaa actccaccgg ctccagtatt acttaaaaaa
    20761 gcagctggta ttgaaaaagg ttcaggcgaa ccaaacaaaa ctaaagttgc tacagtaact
    20821 aaagatcaag tacgcgaaat tgctaacagc aaaatgcaag acttaaacgc tgctgacgaa
    20881 gaagcagcta tgcgtattat cgaaggtact gcacgtagta tgggtatcgt tgtagaataa
    20941 ttttacgaat attaaatttg attacatgat ttaaacgatg aagcagataa cagagataat
    21001 aatgatgaat tataaatata atctgaatga ctagattaat gattgattta ttcataagat
    21061 taattcttct gttgtctgct cttaacttgc atatagcaag taatgtggga ggaaattccg
    21121 ctaaaaccac taaaggagga actataaatg gctaaaaaag gtaaaaagta tcaagaagca
    21181 gctagtaaag ttgaccgtac tcagcactac agtgttgaag aagcaattaa attagctaaa
    21241 gaaacaagca ttgctaactt tgacgcttct gttgaagttg cattccgttt aggaattgat
    21301 acacgtaaaa atgaccaaca aatccgtggt gcagttgtat taccaaacgg aactggtaaa
    21361 tcacaaagtg tattagtatt cgctaaaggt gacaaaattg ctgaagctga agcagcaggt
    21421 gctgactatg taggtgaagc agaatacgtt caaaaaatcc aacaaggttg gttcgacttc
    21481 gatgtagtag ttgctacacc agacatgatg ggtgaagttg gtaaattagg tcgtgtatta
    21541 ggaccaaaag gtttaatgcc aaaccctaaa actggaactg taacaatgga tgttaaaaaa
    21601 gctgttgaag aaatcaaagc tggtaaagta gaatatcgtg ctgaaaaagc tggtatcgta
    21661 catgcatcaa ttggtaaagt ttcatttact gatgaacaat taattgaaaa cttcaatact
    21721 ttacaagatg tattagctaa agctaaacca tcatctgcta aaggtacata cttcaaatct
    21781 gttgctgtaa ctacaacaat gggtcctgga gttaaaattg atactgcaag tttcaaataa
    21841 taaatgatat aaacaattac aggctgaaag aaatatcttt cagtctgtaa aaatatattg
    21901 acaataagta atttccaagt tatattactt attgtgatta ttttacctaa gacagtagga
    21961 gttatttata acttaaaatt tatcctgccg aggctaaaat tgacttgaac gtgatgatct
    22021 atgatctttc aagcactttt tgccgtgggt agaaagtgct ttttttatta attttaaaaa
    22081 aagcaccaaa aatttaaatg gaggtgtctg aatgtctgct atcattgaag ctaaaaaaca
    22141 actagttgat gaaattgctg aggtactatc aaattcagtt tcaacagtaa tcgttgacta
    22201 ccgtggatta acagtagctg aagttactga cttacgttca caattacgtg aagctggtgt
    22261 tgagtataaa gtatacaaaa acactatggt acgtcgtgca gctgaaaaag ctggtatcga
    22321 aggcttagat gaattcttaa caggtcctac tgctattgca acttcaagtg aagatgctgt
    22381 agctgcagcg aaagtaattt ctggatttgc taaagatcat gaagcattag aaattaaatc
    22441 aggcgttatg gaaggcaatg ttattacagc agaagaagtt aaaactgttg gttcattacc
    22501 ttcacacgat ggtcttgtat ctatgctttt atcagtatta caagctcctg tacgcaactt
    22561 cgcttatgcg gttaaagcta ttggagaaca aaaagaagaa aacgctgaat aatttttagc
    22621 gtaaaaaaat taaaaataat ggaggaatta taaaatggct aatcatgaac aaatcattga
    22681 agcgattaaa gaaatgtcag tattagaatt aaacgactta gtaaaagcaa ttgaagaaga
    22741 atttggtgta actgcagctg ctccagtagc agtagcaggt gcagctggtg gcgctgacgc
    22801 tgcagcagaa aaaactgaat ttgacgttga gttaacttca gctggttcat ctaaaatcaa
    22861 agttgttaaa gctgttaaag aagcaactgg tttaggatta aaagatgcta aagaattagt
    22921 agacggagct cctaaagtaa tcaaagaagc tttacctaaa gaagaagctg aaaaacttaa
    22981 agaacaatta gaagaagttg gagctactgt agaattaaaa taattcaagt atcttaaact
    23041 taataatcaa agttttatag caagtattgc tataatataa tgattctttg agaagttaaa
    23101 accccgttat tttgataacg gggttttatt catttaaaga ctgagtgaaa tgttataatt
    23161 ataatgacga gttacaaagt gaagatgagg tggaataatg agtcattatt acgatgaaga
    23221 tccaagtgta attagcaatg aacaacgtat tcaatatcaa ttaaaccatc ataaaattga
    23281 tttaataact gataacggag tgttttcgaa agataaagta gattatggtt cagatgttct
    23341 tgttcaaact tttttaaaag cgcatccacc tggtccaagt aagcgaattg ccgatgttgg
    23401 ttgtggttac ggaccaattg gtttgatgat tgctaaagta tcaccacatc attcaattac
    23461 aatgctagat gttaatcaca gagcgctagc cttagttgaa aaaaacaaaa aattaaatgg
    23521 tattgataat gtgatcgtaa aggaaagtga tgctttgtct gctgtggaag acaaaagttt
    23581 tgattttatt ttaaccaatc caccaataag agcagggaaa gaaaccgtgc atcgtatatt
    23641 cgagcaagca ttacatagat tagactcgaa cggtgaacta ttcgttgtaa ttcagaagaa
    23701 gcaaggtatg ccatctgcaa agaaaagaat gaatgaactt tttggaaatg tagaagtggt
    23761 aaataaagat aaaggatatt acattctgag aagtataaaa gcttgaaatg aaatggatat
    23821 tctgttatag ttatataatg taaaaattta tgttcaataa gtgtgtactt ttacgttaaa
    23881 tagataagtt aattaagaat aaatatagaa tcgaaaatgg tgtcatcatt agtgttgccg
    23941 ttttcttttt gtctttttat taatatgctt atggtattta gctaaaagcg gatcacataa
    24001 tttttgaggg gtgaatctgt ttggcaggtc aagttgtcca atatggaaga catcgtaaac
    24061 gtagaaacta cgcgagaatt tcagaagtat tagaattacc aaacttaata gaaattcaaa
    24121 ctaaatctta cgagtggttc ctaagagaag gtttaatcga aatgtttaga gacatttctc
    24181 caattgaaga ttttactggt aatttgtcat tagagtttgt ggattaccgt ttaggagaac
    24241 caaaatatga tttagaagaa tctaaaaacc gtgacgctac ttatgctgca cctcttcgtg
    24301 taaaagtgcg tctaatcatt aaagaaacag gagaagttaa agaacaagaa gtctttatgg
    24361 gtgatttccc attaatgact gatacaggta cgttcgttat caatggtgca gaacgtgtaa
    24421 tcgtatctca attagttcgt tcaccatccg tttatttcaa tgaaaaaatc gacaaaaatg
    24481 gtcgtgaaaa ctatgatgca acaattattc caaaccgtgg tgcatggtta gaatatgaaa
    24541 cagatgctaa agatgttgta tacgtacgta ttgatagaac acgtaaacta ccattaacag
    24601 tattgttacg tgcattaggt ttctcaagcg accaagaaat tgttgacctt ttaggtgaca
    24661 atgaatattt acgtaatact ttagagaaag acggcactga aaacactgaa caagcgttat
    24721 tagaaatcta tgaacgttta cgtccaggtg aaccaccaac tgttgaaaat gctaaaagtc
    24781 tattgtattc acgtttcttt gatccaaaac gctatgactt agcaagcgtg ggtcgttata
    24841 aaacaaacaa aaaattacat ttaaaacatc gtttatttaa tcaaaaatta gctgagccaa
    24901 ttgtaaatac tgaaactggt gaaattgtag ttgaagaagg tacagtgctt gatcgtcgta
    24961 aaatcgacga aatcatggat gtacttgaat caaatgcaaa cagcgaagtg tttgaattgc
    25021 atggtagcgt tatagacgag ccagtagaaa ttcaatcaat taaagtatat gttcctaacg
    25081 atgatgaagg tcgtacgaca actgtaattg gtaatgcttt ccctgactca gaagttaaat
    25141 gcattacacc agcagatatc attgcttcaa tgagttactt ctttaactta ttaagcggta
    25201 ttggatatac agatgatatt gaccatttag gtaaccgtcg tttacgttct gtaggtgaat
    25261 tactacaaaa ccaattccgt atcggtttat caagaatgga aagagttgta cgtgaaagaa
    25321 tgtcaattca agatactgag tctatcacac ctcaacaatt aattaatatt cgacctgtta
    25381 ttgcatctat taaagaattc tttggtagct ctcaattatc acaattcatg gaccaagcaa
    25441 acccattagc tgagttaacg cataaacgtc gtctatcagc attaggacct ggtggtttaa
    25501 cacgtgaacg tgctcaaatg gaagtacgtg acgttcacta ctctcactat ggccgtatgt
    25561 gtccaattga aacacctgag ggaccaaaca ttggattgat taactcatta tcaagttatg
    25621 cacgtgtaaa tgaattcggc tttattgaaa caccatatcg taaagttgat ttagatacac
    25681 atgctatcac tgatcaaatt gactatttaa cagctgacga agaagatagc tatgttgtag
    25741 cacaagcaaa ctctaaatta gatgaaaatg gtcgtttcat ggatgatgaa gttgtatgtc
    25801 gtttccgtgg taacaataca gttatggcta aagaaaaaat ggattatatg gatgtatcgc
    25861 cgaagcaagt tgtttcagca gcgacagcat gtattccatt cttagaaaat gatgactcaa
    25921 accgtgcatt gatgggtgcg aacatgcaac gtcaagcagt gcctttgatg aatccagaag
    25981 caccatttgt tggtacaggt atggaacacg ttgcagcacg tgattctggt gcggctatta
    26041 cagctaagca cagaggtcgt gttgaacatg ttgaatctaa tgaaattctt gttcgtcgtc
    26101 tagttgaaga gaacggcgtt gagcatgaag gtgaattaga tcgctatcca ttagctaaat
    26161 ttaaacgttc aaactcaggt acatgttaca accaacgtcc aatcgttgca gttggagatg
    26221 ttgttgagta taacgagatt ttagcagatg gaccatctat ggaattagga gaaatggcat
    26281 taggtagaaa cgtagtagtt ggtttcatga cttgggacgg ttacaactat gaggatgccg
    26341 ttatcatgag tgaaagactt gtgaaagatg acgtgtatac ttctattcat attgaagagt
    26401 atgaatcaga agcacgtgat actaagttag gacctgaaga aatcacaaga gatattccta
    26461 atgtttctga aagtgcactt aagaacttag acgatcgtgg tatcgtttat attggtgcag
    26521 aagtaaaaga tggagatatt ttagttggta aagtaacgcc taaaggtgta actgagttaa
    26581 ctgccgaaga aagattgtta catgcaatct ttggtgaaaa agcacgtgaa gttagagata
    26641 cttcattacg tgtacctcac ggcgctggcg gtatcgttct tgatgtaaaa gtattcaatc
    26701 gtgaagaagg cgacgataca ttatcacctg gtgtaaacca attagtacgt gtatatatcg
    26761 ttcaaaaacg taaaattcat gttggtgata agatgtgtgg tcgacatggt aacaaaggtg
    26821 tcatttctaa gattgttcct gaagaagata tgccttactt accagatgga cgtccgatcg
    26881 atatcatgtt aaatcctctt ggtgtaccat ctcgtatgaa catcggacaa gtattagagc
    26941 tacacttagg tatggctgct aaaaatcttg gtattcacgt tgcatcacca gtatttgacg
    27001 gtgcaaacga tgacgatgta tggtcaacaa ttgaagaagc tggtatggct cgtgatggta
    27061 aaactgtact ttatgatgga cgtacaggtg aaccattcga taaccgtatt tcagtaggtg
    27121 taatgtacat gttgaaactt gcgcacatgg ttgatgataa attacatgcg cgttcaacag
    27181 gaccatattc acttgttaca caacaaccac ttggcggtaa agcgcaattc ggtggacaac
    27241 gttttggtga gatggaggta tgggcacttg aagcatatgg tgctgcatac acattacaag
    27301 aaatcttaac ttacaaatcc gatgatacag taggacgtgt gaaaacatac gaggctattg
    27361 ttaaaggtga aaacatctct agaccaagtg ttccagaatc attccgagta ttgatgaaag
    27421 aattacaaag tttaggttta gatgtaaaag ttatggatga gcaagataat gaaatcgaaa
    27481 tgacagacgt tgatgacgat gatgttgtag aacgcaaagt agatttacaa caaaatgatg
    27541 ctcctgaaac acaaaaagaa gttactgatt aatacgcaat ttacaaaaca ggcaaaaaga
    27601 tactaagctg aattttattg atgattcagt ttagtacttt aagccatttt aaataaatgc
    27661 aaatcaatca aatagcacag ctaatctaaa ttgaaggagg taggctcctt gattgatgta
    27721 aataatttcc attatatgaa aataggattg gcttcacctg aaaaaatccg ttcttggtct
    27781 tttggtgaag ttaaaaaacc tgaaacaatc aactaccgta cattaaaacc tgaaaaagat
    27841 ggtctattct gtgaaagaat tttcggacct acaaaagact gggaatgtag ttgtggtaaa
    27901 tacaaacgtg ttcgctacaa aggcatggtc tgtgacagat gtggagttga agtaactaaa
    27961 tctaaagtac gtcgtgaaag aatgggtcac attgaacttg ctgctccagt ttctcacatt
    28021 tggtatttca aaggtatacc aagtcgtatg ggattattac ttgacatgtc accaagagca
    28081 ttagaagaag ttatttactt tgcttcttat gttgttgtag atccaggtcc aactggttta
    28141 gaaaagaaaa ctttattatc tgaagctgaa ttcagagatt attatgataa atacccaggt
    28201 caattcgttg caaaaatggg tgcagaaggt attaaagatt tacttgaaga gattgatctt
    28261 gacgaagaac ttaaattgtt acgcgatgag ttggaatcag ctactggtca aagacttact
    28321 cgtgcaatta aacgtttaga agttgttgaa tcattccgta attcaggtaa caaaccttca
    28381 tggatgattt tagatgtact tccaatcatc ccaccagaaa ttcgtccaat ggttcaatta
    28441 gatggtggac gatttgcaac aagtgactta aacgacttat accgtcgtgt aattaatcga
    28501 aataatcgtt tgaaacgttt attagattta ggtgcacctg gtatcatcgt tcaaaacgaa
    28561 aaacgtatgt tacaagaagc cgttgacgct ttaattgata atggtcgtcg tggtcgtcca
    28621 gttactggcc caggtaaccg tccattaaaa tctttatctc atatgttaaa aggtaaacaa
    28681 ggtcgtttcc gtcaaaactt acttggtaaa cgtgttgact attcaggacg ttcagttatt
    28741 gcagtaggtc caagcttgaa aatgtaccaa tgtggtttac caaaagaaat ggcacttgaa
    28801 ctatttaaac cattcgtaat gaaagaatta gttcaacgtg aaattgcaac taacattaaa
    28861 aatgcgaaga gtaaaatcga acgtatggat gatgaagttt gggacgtatt ggaagaagta
    28921 attagagaac atcctgtatt acttaaccgt gcaccaacac ttcatagact tggtattcaa
    28981 gcatttgaac caactttagt tgaaggtcgt gcgattcgtc tacatccact tgtaacaaca
    29041 gcttataacg ctgactttga cggtgaccaa atggcggttc acgttccttt atcaaaagag
    29101 gcacaagctg aagcaagaat gttgatgtta gcagcacaaa acatcttgaa ccctaaagat
    29161 ggtaaacctg tagttacacc atcacaagat atggtacttg gtaactatta ccttacttta
    29221 gaaagaaaag atgcagtaaa tacaggcgca atctttaata atacaaatga agtattaaaa
    29281 gcatatgcaa atggctttgt acatttacac actagaattg gtgtacatgc aagttcgttc
    29341 aataatccaa catttactga agaacaaaac aaaaagattc ttgctacgtc agtaggtaaa
    29401 attatattca atgaaatcat tccagattca tttgcttata ttaatgaacc tacgcaagaa
    29461 aacttagaaa gaaagacacc aaacagatat ttcatcgatc ctacaacttt aggtgaaggt
    29521 ggattaaaag aatactttga aaatgaagaa ttaattgaac ctttcaacaa aaaattctta
    29581 ggtaatatta ttgcagaagt attcaacaga tttagcatca ctgatacatc aatgatgtta
    29641 gaccgtatga aagacttagg attcaaattc tcatctaaag ctggtattac agtaggtgtt
    29701 gctgatatcg tagtattacc tgataagcaa caaatacttg atgagcatga aaaattagtc
    29761 gacagaatta caaaacaatt caaccgtggt ttaatcactg aagaagaaag atataatgca
    29821 gttgttgaaa tttggacaga tgcaaaagat caaattcaag gtgaattgat gcaatcactt
    29881 gataaaacta acccaatctt catgatgagt gattcaggtg cccgtggtaa cgcatctaac
    29941 tttacacagt tagcaggtat gcgtggattg atggccgcac catctggtaa gattatcgaa
    30001 ttaccaatca catcttcatt ccgtgaaggt ttaacagtac ttgaatactt catctcaact
    30061 cacggtgcac gtaaaggtct tgccgataca gcacttaaaa cagctgactc aggatatctt
    30121 actcgtcgtc ttgttgacgt ggcacaagat gttattgttc gtgaagaaga ctgtggtact
    30181 gatagaggtt tattagtttc tgatattaaa gaaggtacag aaatgattga accatttatc
    30241 gaacgtattg aaggtcgtta ttctaaagaa acaattcatc atcctgaaac tgatgaaata
    30301 atcattcgtc ctgatgaatt aattacacct gaaattgcta agaaaattac agatgctggt
    30361 attgaacaaa tgtatattcg ctcagcattt acttgtaacg cacgacatgg tgtttgtgaa
    30421 aaatgttacg gtaaaaacct tgctactggt gaaaaagttg aagttggtga agcagttggt
    30481 acaattgcag cccaatctat cggtgaacca ggtacacagc ttacaatgcg tacattccat
    30541 acaggtgggg tagcaggtag cgatatcaca caaggtcttc ctcgtattca agagattttc
    30601 gaagcacgta accctaaagg tcaagcggta attacggaaa tcgaaggtgt cgtagaagat
    30661 attaaattag caaaagatag acaacaagaa attgttgtta aaggtgctaa tgaaacaaga
    30721 tcataccttg cttcaggtac ttcaagaatt attgtagaaa tcggtcaacc agttcaacgt
    30781 ggtgaagtat taactgaagg ttctattgaa cctaagaatt acttatctgt tgctggatta
    30841 aacgcgactg aaagctactt attaaaagaa gtacaaaaag tttaccgtat gcaaggtgta
    30901 gaaatcgacg ataaacacgt tgaggttatg gttcgacaaa tgttacgtaa agttagaatt
    30961 atcgaagcag gtgatacgaa gttattacca ggttcattag ttgatattca taactttaca
    31021 gatgcaaata gagaagcatt taaacaccgt aagcgtcctg caacagctaa accagtatta
    31081 cttggtatta ctaaagcatc acttgaaaca gaaagtttct tatctgcagc atcattccaa
    31141 gaaacaacaa gagttcttac agatgcagca attaaaggta agcgtgatga cttattaggt
    31201 cttaaagaaa acgtaattat tggtaagtta attccagctg gtactggtat gagacgttat
    31261 agcgacgtaa aatacgaaaa aacagctaaa ccagttgcag aagttgaatc tcaaactgaa
    31321 gtaacggaat aacaagtata taacagaggc taatgcttta gcctcttgtt atttttatgt
    31381 aaattatttg atttaatgtt gacgaattct cttgttcaat gttaatatat taaaggttga
    31441 tgcaagcaga actttggagg ataaattatt gtctaaggaa aaagttgcac gctttaacaa
    31501 acaacatttt gtagttggtc ttaaagaaac gcttaaagcg ttaaagaaag atcaagttac
    31561 atctttgatt attgctgaag acgttgaagt atatttaatg actcgcgtgt taagccaaat
    31621 caatcagaaa aatatacctg tatctttttt caaaagcaaa catgctttgg gtaaacatgt
    31681 aggtattaac gtcaatgcga caatagtagc attgattaaa tgagaattag taagtgtttt
    31741 acttactaaa ttttatttaa cctaaaaatg aaccacctgg atgtgtggga ttaaaaagtg
    31801 aagagaggag gacatatcac atgccaacta ttaaccaatt agtacgtaaa ccaagacaaa
    31861 gcaaaatcaa aaaatcagat tctccagctt taaataaagg tttcaacagt aaaaagaaaa
    31921 aatttactga cttaaactca ccacaaaaac gtggtgtatg tactcgtgta ggtacaatga
    31981 cacctaaaaa acctaactca gcgttacgta aatatgcacg tgtgcgttta tcaaacaaca
    32041 tcgaaattaa cgcatacatc cctggtatcg gacataactt acaagaacac agtgttgtac
    32101 ttgtacgtgg tggacgtgta aaagacttac caggtgtgcg ttaccatatt gtacgtggag
    32161 cacttgatac ttcaggtgtt gacggacgta gacaaggtcg ttcattatac ggaactaaga
    32221 aacctaaaaa ctaagaattt agtttttaat taaatcttaa acttaaaata tttaatataa
    32281 ggaagggagg atttacatta tgcctcgtaa aggatcagta cctaaaagag acgtattacc
    32341 agatccaatt cataactcta agttagtaac taaattaatt aacaaaatta tgttagatgg
    32401 taaacgtgga acagcacaaa gaattcttta ttcagcattc gacctagttg aacaacgcag
    32461 tggtcgtgat gcattagaag tattcgaaga agcaatcaac aacattatgc cagtattaga
    32521 agttaaagct cgtcgcgtag gtggttctaa ctatcaagta ccagtagaag ttcgtccaga
    32581 gcgtcgtact actttaggtt tacgttggtt agttaactat gcacgtcttc gtggtgaaaa
    32641 aacgatggaa gatcgtttag ctaacgaaat tttagatgca gcaaataata caggtggtgc
    32701 cgttaagaaa cgtgaggaca ctcacaaaat ggctgaagca aacaaagcat ttgctcacta
    32761 ccgttggtaa gataaaagct tttaccctga gtgtgttcta tattaatgaa ttttcattaa
    32821 gcgttcatgc ttagggcatc gccatatcta tcgtatttat tcagtaatat aaactggaag
    32881 gagaaaaaat acatggctag agaattttca ttagaaaaaa ctcgtaatat cggtatcatg
    32941 gctcacattg atgctggtaa aacgactacg actgaacgta ttctttatta cactggccgt
    33001 atccacaaaa ttggtgaaac acacgaaggt gcttcacaaa tggactggat ggagcaagaa
    33061 caagaccgtg gtattactat cacatctgct gcaacaacag cagcttggga aggtcaccgt
    33121 gtaaacatta tcgatacacc tggacacgta gacttcactg tagaagttga acgttcatta
    33181 cgtgtacttg acggagcagt tacagtactt gatgcacaat caggtgttga acctcaaact
    33241 gaaacagttt ggcgtcaggc tacaacttat ggtgttccac gtatcgtatt tgtaaacaaa
    33301 atggacaaat taggtgctaa cttcgaatac tctgtaagta cattacatga tcgtttacaa
    33361 gctaacgctg ctccaatcca attaccaatt ggtgcggaag acgaattcga agcaatcatt
    33421 gacttagttg aaatgaaatg tttcaaatat acaaatgatt taggtactga aattgaagaa
    33481 attgaaattc ccgaagacca cttagataga gctgaagaag ctcgtgctag cttaatcgaa
    33541 gcagttgcag aaactagcga cgaattaatg gaaaaatatc ttggtgacga agaaatttca
    33601 gtttctgaat taaaagaagc tatccgccaa gctactacta acgtagaatt ctacccagta
    33661 ctttgtggta cagctttcaa aaacaaaggt gttcaattaa tgcttgacgc tgtaattgat
    33721 tacttacctt caccactaga cgttaaacca attattggtc accgtgctag caaccctgaa
    33781 gaagaagtaa tcgcgaaagc agacgattca gctgaattcg ctgcattagc gttcaaagtt
    33841 atgactgacc cttatgttgg taaattaaca ttcttccgtg tgtattcagg tacaatgaca
    33901 tctggttcat acgttaagaa ctctactaaa ggtaaacgtg aacgtgtagg tcgtttatta
    33961 caaatgcacg ctaactcacg tcaagaaatc gatactgtat actctggaga tatcgctgct
    34021 gcggtaggtc ttaaagatac aggtactggt gatactttat gtggtgagaa aaatgacatt
    34081 atcttggaat caatggaatt cccagagcca gttattcact tatcagtaga gccaaaatct
    34141 aaagctgacc aagataaaat gactcaagct ttagttaaat tacaagaaga agacccaaca
    34201 ttccatgcac acactgacga agaaactgga caagttatca tcggtggtat gggtgagctt
    34261 cacttagaca tcttagtaga ccgtatgaag aaagaattca acgttgaatg taacgtaggt
    34321 gctccaatgg tttcatatcg tgaaacattc aaatcatctg cacaagttca aggtaaattc
    34381 tctcgtcaat ctggtggtcg tggtcaatac ggtgatgttc acattgaatt cacaccaaac
    34441 gaaacaggcg caggtttcga attcgaaaac gctatcgttg gtggtgtagt tcctcgtgaa
    34501 tacattccat cagtagaagc tggtcttaaa gatgctatgg aaaatggtgt tttagcaggt
    34561 tatcctttaa ttgatgttaa agctaaatta tatgatggtt cataccatga tgtcgattca
    34621 tctgaaatgg ccttcaaaat tgctgcatca ttagcactta aagaagctgc taaaaaatgt
    34681 gatcctgtaa tcttagaacc aatgatgaaa gtaactattg aaatgcctga agagtacatg
    34741 ggtgatatca tgggtgacgt aacatctcgt cgtggacgtg ttgatggtat ggaacctcgt
    34801 ggtaatgcac aagttgttaa tgcttatgta ccactttcag aaatgttcgg ttatgcaaca
    34861 tcattacgtt caaacactca aggtcgcggt acttacacta tgtacttcga tcactatgct
    34921 gaagttccaa aatcaatcgc tgaagatatt atcaagaaaa ataaaggtga ataatataac
    34981 ttgttttgac tagctagcct aggttaaaat acaaggtgag cttaaatgta agctatcatc
    35041 tttatagttt gattttttgg ggtgaatgca ttataaaaga attgtaaaat tctttttgca
    35101 tcgctataaa taatttctca tgatggtgag aaactatcat gagagataaa tttaaatatt
    35161 atttttaatt agaataggag agattttata atggcaaaag aaaaattcga tcgttctaaa
    35221 gaacatgcca atatcggtac tatcggtcac gttgaccatg gtaaaacaac attaacagca
    35281 gcaatcgcta ctgtattagc aaaaaatggt gactcagttg cacaatcata tgacatgatt
    35341 gacaacgctc cagaagaaaa agaacgtggt atcacaatca atacttctca cattgagtac
    35401 caaactgaca aacgtcacta cgctcacgtt gactgcccag gacacgctga ctacgttaaa
    35461 aacatgatca ctggtgctgc tcaaatggac ggcggtatct tagtagtatc tgctgctgac
    35521 ggtccaatgc cacaaactcg tgaacacatt cttttatcac gtaacgttgg tgtaccagca
    35581 ttagtagtat tcttaaacaa agttgacatg gttgacgatg aagaattatt agaattagta
    35641 gaaatggaag ttcgtgactt attaagcgaa tatgacttcc caggtgacga tgtacctgta
    35701 atcgctggtt cagcattaaa agctttagaa ggcgatgctc aatacgaaga aaaaatctta
    35761 gaattaatgg aagctgtaga tacttacatt ccaactccag aacgtgattc tgacaaacca
    35821 ttcatgatgc cagttgagga cgtattctca atcactggtc gtggtactgt tgctacaggc
    35881 cgtgttgaac gtggtcaaat caaagttggt gaagaagttg aaatcatcgg tttacatgac
    35941 acatctaaaa caactgttac aggtgttgaa atgttccgta aattattaga ctacgctgaa
    36001 gctggtgaca acattggtgc attattacgt ggtgttgctc gtgaagacgt acaacgtggt
    36061 caagtattag ctgctcctgg ttcaattaca ccacatactg aattcaaagc agaagtatac
    36121 gtattatcaa aagacgaagg tggacgtcac actccattct tctcaaacta tcgtccacaa
    36181 ttctatttcc gtactactga cgtaactggt gttgttcact taccagaagg tactgaaatg
    36241 gtaatgcctg gtgataacgt tgaaatgaca gtagaattaa tcgctccaat cgcgattgaa
    36301 gacggtactc gtttctcaat ccgtgaaggt ggacgtactg taggatcagg cgttgttact
    36361 gaaatcatta aataatttct aatttcttag attttatata aaaagaagat ccctcaatcg
    36421 aggggtcttt ttttaatgtg taaattttgt aatggctatt cgatttagaa gaacaataat
    36481 tgatgaaaga ctgactaata aaacttataa ctgataatac tgtttaaata aaattgttga
    36541 gtcttggaca ttgtaaaatg ctcccttcaa agttttcatt ttttc
//
LOCUS       DAMQWL010000013        35948 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.013, whole genome shotgun sequence.
ACCESSION   DAMQWL010000013 DAMQWL010000000
VERSION     DAMQWL010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 35948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35948
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.013"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            44..532
                     /locus_tag="PF788_000610"
     CDS             44..532
                     /locus_tag="PF788_000610"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDG6302889.1"
                     /translation="MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEA
                     AGLCAPQINQSLQVAIIDMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTR
                     SKMIVVESYDVNGNKVELTAHEDVARMILHIIDQMNGIPFTERADRILTDKEVEAYFI
                     ND"
     gene            525..1460
                     /locus_tag="PF788_000611"
     CDS             525..1460
                     /locus_tag="PF788_000611"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDG6302890.1"
                     /translation="MTKIIFMGTPDFSTTVLEMLIAEHDVIAVVTQPDRPVGRKRVMT
                     PPPVKKVAMKYDLPVYQPEKLSGSEELEQMLQLDVDLIVTAAFGQLLPESLLALPNLG
                     AINVHASLLPKYRGGAPIHQAIIDGEQETGITIMYMVKKLDAGNIISQQAIKIEENDN
                     VGTMHDKLSVLGADLLKETLPSIIEGTNESVPQDDTQATFASNIRREDERISWNKPGR
                     QVFNQIRGLSPWPVAYTTMDDTNLKIYDAELVETNKINEPGTIIETTKKAIIVATNDN
                     EAVAIKDMQLAGKKRMLAANYLSGAQNTLVGKKLI"
     gene            1457..2764
                     /gene="rsmB"
                     /locus_tag="PF788_000612"
     CDS             1457..2764
                     /gene="rsmB"
                     /locus_tag="PF788_000612"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDG6302891.1"
                     /translation="MIENVRSLAFDTIQDILNEGAYSNLRINEVLSENELNAMDKALF
                     TEIVYGTVKRKYTLDFYLKPFVKTKIKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVE
                     IAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYG
                     LEETETILQSFLETTSTTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQP
                     IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQV
                     DASDIHDHKIDLINFNIKKLRLTNIKAFQHDATKPYDKTYDKILVDAPCSGLGVMRHK
                     PEIKYTQSKQHIESLVELQLEILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKN
                     NKNFEFEPFQHPITGELVKTLQIMPQDFNSDGFFITKIKRKDN"
     gene            2767..3861
                     /gene="rlmN"
                     /locus_tag="PF788_000613"
     CDS             2767..3861
                     /gene="rlmN"
                     /locus_tag="PF788_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002435140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HDG6302892.1"
                     /translation="MITAEKKKKNKFLPNFDKQSIYSLRFDEMQNWLVEQGQQKFRAK
                     QIFEWLYQKRVDSIDEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDGTIKFLFELQD
                     GYTIEIVLMRHDYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKA
                     LDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIY
                     DFADEDIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYG
                     LFGGVNDQLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLG
                     INATIRREQGSDIDAACGQLRAKERQVETR"
     gene            3868..4611
                     /locus_tag="PF788_000614"
     CDS             3868..4611
                     /locus_tag="PF788_000614"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase Stp1"
                     /protein_id="HDG6302893.1"
                     /translation="MLEAQFFTDTGQHRDKNEDAGGIFYNQTNQQLLVLCDGMGGHKA
                     GEVASKFVTDELKSRFEAENLIEQHQAENWLRNNIKDINFQLYHYAQENAEYKGMGTT
                     CVCALVFEKSVVIANVGDSRAYVINSRQIEQITSDHSFVNHLVLTGQITPEEAFTHPQ
                     RNIITKVMGTDKRVSPDLFIKRLNFYDYLLLNSDGLTDYVKDNEIKRLLVKEGTIEDH
                     GDQLMQLALDNHSKDNVTFILAAIEGDKV"
     gene            4608..6602
                     /gene="pknB"
                     /locus_tag="PF788_000615"
     CDS             4608..6602
                     /gene="pknB"
                     /locus_tag="PF788_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase Stk1"
                     /protein_id="HDG6302894.1"
                     /translation="MIGKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIP
                     PREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH
                     GPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE
                     TSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIA
                     IKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENRA
                     NEDVYELDKMKTIAVPLKKEDLAKHISEHKSNQPKRETTQVPIVNGPAHHQQFQKPEG
                     TVYEPKPKKKSTRKIVLLSLIFSLLMIALVSFVAMAMFGNKYEETPDVIGKSVKEAEQ
                     IFNKNNLKLGKISRSYSDKYPENEIIKTTPNTGERVERGDSVDVVISKGPEKVKMPNV
                     IGLPKEEALQKLKSLGLKDVTIEKVYNNQAPKGYIANQSVTANTEIAIHDSNIKLYES
                     LGIKQVYVEDFEHKSFSKAKKALEEKGFKVESKEEYSDDIDEGDVISQSPKGKSVDEG
                     STISFVVSKGKKSDSSDVKTTTESVDVPYTGKNDKSQKVKVYIKDKDNDGSTEKGSFD
                     ITSDQRIDIPLRIEKGKTASYIVKVDGKTVAEKEVSYDDV"
     gene            6830..7705
                     /gene="rsgA"
                     /locus_tag="PF788_000616"
     CDS             6830..7705
                     /gene="rsgA"
                     /locus_tag="PF788_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499727.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HDG6302895.1"
                     /translation="MKTGRIVKSISGVYQVDVNGERFNTKPRGLFRKKKFSPVVGDIV
                     EFEVQNINEGYIHQVFERENELKRPPVSNIDTLVIVMSAVEPNFSTQLLDRFLVIAHS
                     YQLNARILVTKKDKTPIEKQFEINELLKIYENIGYETEFIGNDDDRKKIVEAWPAGLI
                     VLSGQSGVGKSTFLNHYRPELNLETNDISKSLNRGKHTTRHVELFERQNGYIADTPGF
                     SALDFDHIDKDEIKDYFLELNRYGETCKFRNCNHIKEPNCNVKHQLEIGNIAQFRYDH
                     YLQLFNEISNRKVRY"
     gene            7706..8350
                     /locus_tag="PF788_000617"
     CDS             7706..8350
                     /locus_tag="PF788_000617"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDG6302896.1"
                     /translation="MTKLYPSLLSVDFLDLQHELKRLEEAGVDGVHFDVMDGQFVPNI
                     SIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQM
                     IKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNA
                     IKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG"
     gene            8357..8998
                     /locus_tag="PF788_000618"
     CDS             8357..8998
                     /locus_tag="PF788_000618"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HDG6302897.1"
                     /translation="MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFF
                     SVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGR
                     LDHFFGAIQLLLKKAYYKHDVHIEVIDQQNKIELLPKGQHTVEKDKSYPYISFIPMTD
                     DVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN"
     gene            complement(9379..9567)
                     /locus_tag="PF788_000619"
     CDS             complement(9379..9567)
                     /locus_tag="PF788_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDG6302898.1"
                     /translation="MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKP
                     KKVWVSARALKSGKVTRV"
     gene            10010..10384
                     /locus_tag="PF788_000620"
     CDS             10010..10384
                     /locus_tag="PF788_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HDG6302899.1"
                     /translation="MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRD
                     GIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLN
                     VSVNSINIYVQGVRVNNTGKKA"
     gene            10399..12045
                     /gene="fakA"
                     /locus_tag="PF788_000621"
     CDS             10399..12045
                     /gene="fakA"
                     /locus_tag="PF788_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid kinase catalytic subunit FakA"
                     /protein_id="HDG6302900.1"
                     /translation="MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTN
                     MNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESES
                     EINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAIEKANNTEDCIELMEYI
                     IVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKIDKDE
                     FVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDE
                     EIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETA
                     IITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNIL
                     MASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLT
                     YAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLAEDSEILTVIIGQ
                     DAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE"
     gene            12235..14295
                     /gene="recG"
                     /locus_tag="PF788_000622"
     CDS             12235..14295
                     /gene="recG"
                     /locus_tag="PF788_000622"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDG6302901.1"
                     /translation="MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPT
                     RYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFN
                     QPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
                     IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRT
                     YAFTELFLFELRMQWLNRLEKSSDEAIEIDYDIDQVKSFIDRLPFELTEAQKSSVNEI
                     FRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLM
                     ALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITD
                     EQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPII
                     TTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGV
                     SRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRFGL
                     STLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGD
                     FFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLH
                     RSFD"
     gene            14498..15070
                     /gene="fapR"
                     /locus_tag="PF788_000623"
     CDS             14498..15070
                     /gene="fapR"
                     /locus_tag="PF788_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor FapR"
                     /protein_id="HDG6302902.1"
                     /translation="MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIR
                     LDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSV
                     FHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQT
                     AKHYYVEVKSYVKHTLVFKGNFKMFYDKRG"
     gene            15075..16061
                     /gene="plsX"
                     /locus_tag="PF788_000624"
     CDS             15075..16061
                     /gene="plsX"
                     /locus_tag="PF788_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDG6302903.1"
                     /translation="MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYN
                     LNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALM
                     SAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQ
                     KIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNHDHSLNFVGNIEAKTLMDGDTDVV
                     VTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKLAGAILKKDLAEFAKKMDYSEY
                     GGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE"
     gene            16054..16980
                     /gene="fabD"
                     /locus_tag="PF788_000625"
     CDS             16054..16980
                     /gene="fabD"
                     /locus_tag="PF788_000625"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDG6302904.1"
                     /translation="MSKTAIIFPGQGAQKVGMAQDLFNNNDQATEILTSAANTLDFDI
                     LETMFTDEEGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVL
                     SFEDAVKIVRKRGQLMAQAFPTGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANIN
                     CPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFE
                     WRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPG
                     KVLSGLIKKINRDVKLTSIQTLEDVKGWNEND"
     gene            16973..17707
                     /gene="fabG"
                     /locus_tag="PF788_000626"
     CDS             16973..17707
                     /gene="fabG"
                     /locus_tag="PF788_000626"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HDG6302905.1"
                     /translation="MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVV
                     EEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQ
                     EWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVI
                     GLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIAN
                     TVAFLASDKAKYITGQTIHVNGGMYM"
     gene            17950..18183
                     /locus_tag="PF788_000627"
     CDS             17950..18183
                     /locus_tag="PF788_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002510960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDG6302906.1"
                     /translation="MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVM
                     ELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK"
     gene            18299..19030
                     /locus_tag="PF788_000628"
     CDS             18299..19030
                     /locus_tag="PF788_000628"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDG6302907.1"
                     /translation="MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFI
                     NDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIF
                     ANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFP
                     HVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAE
                     GKGKTKKESEQRAAESAYKQLKQIK"
     gene            19177..22743
                     /gene="smc"
                     /locus_tag="PF788_000629"
     CDS             19177..22743
                     /gene="smc"
                     /locus_tag="PF788_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HDG6302908.1"
                     /translation="MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDA
                     IKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVT
                     RRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQ
                     IIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKT
                     LSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGK
                     RHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLMELLE
                     NISNEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSE
                     QSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELS
                     AVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGV
                     KHILKAKNKELKGIYGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFL
                     KERNLGRATFLPLNVIQSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLG
                     NTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTT
                     MRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLT
                     TQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETYLESIKASLKRLEDEIERYTKLS
                     KEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQNQQTKHQLKDVKEKIAF
                     FNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEAKLQVCH
                     QDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKK
                     VKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVT
                     ERFKETFHAIQGHFTAVFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLL
                     SGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVI
                     THRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ"
     gene            22743..23993
                     /gene="ftsY"
                     /locus_tag="PF788_000630"
     CDS             22743..23993
                     /gene="ftsY"
                     /locus_tag="PF788_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDG6302909.1"
                     /translation="MSFFKRLKDKFATNKENEEVKSLTEEQGQDKLEDTHSEGSTQDA
                     NDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQ
                     LNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREV
                     IVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVM
                     LAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDT
                     AGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVT
                     GIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQ
                     NEEITTVENDQIVTEEKDDNHGSK"
     gene            23980..24312
                     /locus_tag="PF788_000631"
     CDS             23980..24312
                     /locus_tag="PF788_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HDG6302910.1"
                     /translation="MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEI
                     ADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRY
                     IQQLEDLE"
     gene            24338..25705
                     /gene="ffh"
                     /locus_tag="PF788_000632"
     CDS             24338..25705
                     /gene="ffh"
                     /locus_tag="PF788_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002457378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDG6302911.1"
                     /translation="MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADV
                     NFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMSNKPPT
                     VVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPV
                     YSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEI
                     MLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGM
                     SEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDF
                     LEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPD
                     TLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKG
                     MNLPF"
     gene            26140..26415
                     /gene="rpsP"
                     /locus_tag="PF788_000633"
     CDS             26140..26415
                     /gene="rpsP"
                     /locus_tag="PF788_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDG6302912.1"
                     /translation="MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTS
                     ANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK"
     gene            26603..27106
                     /gene="rimM"
                     /locus_tag="PF788_000634"
     CDS             26603..27106
                     /gene="rimM"
                     /locus_tag="PF788_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDG6302913.1"
                     /translation="MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNN
                     DLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDI
                     IGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIIT
                     PMEGLLD"
     gene            27106..27843
                     /gene="trmD"
                     /locus_tag="PF788_000635"
     CDS             27106..27843
                     /gene="trmD"
                     /locus_tag="PF788_000635"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDG6302914.1"
                     /translation="MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAIN
                     KHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSK
                     ADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGN
                     EQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKR
                     PDLIEKYPLTNADKQILERYKIGLKKG"
     gene            27946..28296
                     /gene="rplS"
                     /locus_tag="PF788_000636"
     CDS             27946..28296
                     /gene="rplS"
                     /locus_tag="PF788_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDG6302915.1"
                     /translation="MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQV
                     FEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYL
                     RSLRGKAARIQEIR"
     gene            complement(28540..31146)
                     /gene="yfhO"
                     /locus_tag="PF788_000637"
     CDS             complement(28540..31146)
                     /gene="yfhO"
                     /locus_tag="PF788_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoteichoic acid-specific glycosyltransferase
                     YfhO"
                     /protein_id="HDG6302916.1"
                     /translation="MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSG
                     AGDGFRQMMPFQMYLYEHLRSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIK
                     IGETVGIFNPTTIHFWPTNQLIMAMIRAIITFVVTFYLFKILHFKRSANMIATILYGM
                     STVVIYFNFTWSFYGNLLYLLPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQ
                     AIIIGCYYLYRLIFTYKYDIVSRTQKLICVISATVLSVLSSVFGLFTGISAFLENDRK
                     QNPNVDIPFLTPLDYHYFFFSDGFYITISILTIVALLSFKLYRFYFYRLFAIVTWILF
                     IGSLSQYFDSAFNGFSFPERRWVYILALSSSALCGLFIQHLSTLNMKYYLIRTIPVCI
                     IAILYVLLSPTHPLALIVGIILLIVLAVILKFSLWRYKKLTVAILVLIVMIQQIVILD
                     NNKNMAIKPYQQSLSTLKQHDYHSNYVNQLIKKINQNATGSFNRIDYMSDYALNSPFI
                     YHYNGISLYSSIFNGDILKYYDKTLQINMPIDKNSTYRLLGNRQNLLSLWNVNDRIRV
                     NHDDNLPYGFKIKSEHKDNKVRWIHSKNTIHYPSAHITNKVFSNKELKSPLDKEQAML
                     QGIVSNNIKDVNTHFKANKNLLSDSTIKLNSAAWQSPTKHLLQVKQNNGGLTVQLPKS
                     VSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLTYKYRRVVTPVTIRIKAPDRI
                     RLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTKHGYTITKNKNSSGYIVLP
                     TAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYTPPYYYLLITITIFGII
                     CSIIFTRWARQK"
     gene            31547..32431
                     /gene="ylqF"
                     /locus_tag="PF788_000638"
     CDS             31547..32431
                     /gene="ylqF"
                     /locus_tag="PF788_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HDG6302917.1"
                     /translation="MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMI
                     DEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIK
                     ATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQW
                     IKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDL
                     ARLKSHYNIEVPEDAEIIAWFDAIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNY
                     CFDIFKDMTEELANDANN"
     gene            32415..33182
                     /locus_tag="PF788_000639"
     CDS             32415..33182
                     /locus_tag="PF788_000639"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDG6302918.1"
                     /translation="MTLTIKEVTQLINAVNTIEELENHECFLDERKGVQNAIARRRKA
                     LEKEQALKEKYVEMTYFENEILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNY
                     LGLDDSKKVPVTKRLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGL
                     SVQPTHLLIDAMTLDNALPQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEY
                     GFEKNAGYGTKQHLLAIDDIGIMKEHRKSFEPIKSLL"
     gene            33291..34457
                     /gene="sucC"
                     /locus_tag="PF788_000640"
     CDS             33291..34457
                     /gene="sucC"
                     /locus_tag="PF788_000640"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006190114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDG6302919.1"
                     /translation="MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVYV
                     VKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGC
                     AIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQA
                     RRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINF
                     DDNALFRHKDVVELRDLEEEDPKEIEASKHDLSYIALDGDIGCMVNGAGLAMATMDTI
                     NHFGGNPANFLDAGGSATREKVTEAFKIILGDENVKGIFVNIFGGIMKCDVIAEGIVE
                     AVKEVDLTLPLVVRLEGTNVELGKKILKDSGLAIEPAATMAEGAQKIVKLVKEA"
     gene            34479..35387
                     /gene="sucD"
                     /locus_tag="PF788_000641"
     CDS             34479..35387
                     /gene="sucD"
                     /locus_tag="PF788_000641"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDG6302920.1"
                     /translation="MSVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKG
                     GQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPV
                     LDMVKVKRYLQGRKTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYE
                     AVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEA
                     AEWIKANMTKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAAT
                     PSEIGSTLIEAAKEAGIYESLLTVNK"
     gene            35614..>35948
                     /locus_tag="PF788_000642"
     CDS             35614..>35948
                     /locus_tag="PF788_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499755.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HDG6302921.1"
                     /translation="MNKQQSKVRYSIRKVSIGILSISIGMFLALGMSNKAYADEIDKS
                     KDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKLDNKSAISNGNEINQD
                     IKISNTPKNS"
BASE COUNT        13332 a         4845 c         6996 g        10775 t
ORIGIN      
        1 tacgttataa tagtttgatg aattttattg aggagtaaga gttatggcga ttaaaaagtt
       61 agtaccagca tcgcatccta ttttaacgaa aaaagcgcaa gcagttaaaa catttgatga
      121 ttcgttaaaa agattattac aagatttaga agatacaatg tatgcacaag aagctgctgg
      181 cttatgtgca cctcaaatta atcagtcatt gcaagtggca attattgata tggaaatgga
      241 aggattatta caacttgtta atccgaaaat tattagtcaa tcaaatgaaa caataacaga
      301 cttagaaggt tcaattacat tgccagatgt ttacggcgaa gtgacaagaa gtaaaatgat
      361 agttgtcgaa agttatgacg tcaatgggaa caaagttgaa ctaactgcac atgaagatgt
      421 agcaagaatg attttgcata ttatagatca aatgaacggt atccctttta cagaacgtgc
      481 ggaccgtatt ttaacagata aagaagtgga ggcatatttt ataaatgact aaaataatat
      541 ttatgggtac accagacttt tcaacaactg ttttagaaat gcttattgca gaacatgatg
      601 tcattgcagt cgtaacgcaa ccagatcgac ctgttggacg taaacgtgtt atgacaccac
      661 caccagttaa aaaagttgca atgaaatatg atttacctgt atatcaacct gaaaaattaa
      721 gtggatcaga agaattagaa caaatgcttc aattagatgt agatttaatt gtaactgctg
      781 cttttggaca attattacct gaatcattgt tggcattacc aaatcttggg gcaattaatg
      841 tacatgcatc attgttaccg aagtatagag gtggtgcacc aattcatcag gcaattatcg
      901 atggtgaaca agaaaccggc ataacaatta tgtatatggt taaaaaatta gatgcgggta
      961 atattatttc gcaacaagca attaaaatag aagaaaatga taatgtcggt acgatgcatg
     1021 ataaattaag tgtattaggg gcagatttat taaaagaaac tttaccatct attatagagg
     1081 gcacaaatga aagcgtacct caagatgata cgcaagcaac atttgcttcc aatattcgac
     1141 gcgaagatga gcgaattagc tggaataaac caggaagaca agtgtttaat caaattcgtg
     1201 gattatcacc atggccagtt gcttatacaa ctatggatga cactaacttg aaaatatacg
     1261 atgctgaact cgttgagact aataagataa acgagcctgg aaccattata gaaacgacta
     1321 aaaaagccat tattgttgct acaaatgata atgaagctgt tgcaattaaa gatatgcaat
     1381 tagctgggaa aaagagaatg ttagctgcca attatttaag tggtgcgcaa aacacactag
     1441 tagggaagaa acttatatga tagaaaacgt gagaagtctt gcttttgaca cgattcaaga
     1501 tatattaaat gaaggtgcgt atagtaactt gcgtatcaat gaagtgttgt cagaaaatga
     1561 attaaatgca atggataagg ctttatttac agaaattgtc tacggaaccg ttaaaagaaa
     1621 atatacgtta gatttttatt taaagccttt tgtgaaaaca aagattaagg catgggttag
     1681 gcaattatta tggatgagta tttatcaata tgtttattta gataaagttc caaatcatgc
     1741 cattattaat gaagcagttg aaatagcaaa agaacgcggt ggctatcata atggtaatgt
     1801 cgtaaatggt attttacgta caatgatgcg tagtgactta cctgatttta atgaaattgc
     1861 agatcctaaa aaaagaatgg caatcgagta tagtatgccg aagtggatta tagatcattg
     1921 ggcaacacat tatggtctcg aagaaactga aacaatttta cagtcatttt tagaaacgac
     1981 atcaacaact gtgcgtgcca acctgacgcg agcatcatta gatgatatta ttgaaaagtt
     2041 gcaagacgaa ggttatgacg ttgaaaaaga tcatgactta ccttattgtc tccatatagg
     2101 aggacaacca attattcatt ctcgttcatt taaagatgga ttcgtttcaa ttcaagataa
     2161 aagctcaatg tttgttgcac acattatgaa tgtagaccga catgatcacg tattagatgc
     2221 atgtagtgca cctggcggta aagcttgtca cattgctgaa gttttaatgc cagaagggca
     2281 agttgacgct tcagatatac atgatcacaa aatagactta attaatttta atataaaaaa
     2341 attacgatta acaaatatta aagcttttca acatgatgcg acaaaacctt atgataaaac
     2401 atacgataag atacttgttg atgcaccatg tagcggatta ggtgtaatga gacataagcc
     2461 ggagattaag tatactcaaa gcaaacaaca tattgagtca ctagttgaat tacagcttga
     2521 aatattggaa aatgtaaaaa acaatgtaaa aataggtggc gaaatcatct attcaacatg
     2581 tacaattgag caactagaaa atgaaaacgt gatttatacg tttttgaaaa ataataaaaa
     2641 cttcgaattt gaaccgtttc aacatccgat aactggagag ttggtcaaaa cgttacaaat
     2701 catgccgcaa gactttaatt cagatggatt ctttatcact aagataaaaa gaaaggacaa
     2761 ttaggaatga taactgctga aaagaaaaag aagaataaat ttcttccaaa ttttgacaag
     2821 caatcaatat attcattgcg atttgacgaa atgcaaaact ggctcgttga acaagggcaa
     2881 caaaaatttc gagcgaaaca gatttttgaa tggttatatc aaaaaagagt agattcgatt
     2941 gatgaaatga cgaacttatc gaaagactta cgacagcttt taaaagataa ctttactgtt
     3001 acaactttaa caactgtagt aaaacaagaa agtaaagacg gtacaattaa attcttattt
     3061 gaattacaag atggctatac aattgaaatt gttttaatga gacatgatta tggaaattca
     3121 gtatgtgtaa cgacacaagt aggttgtcgc atcggatgta cgttttgtgc ttctacactt
     3181 ggcggcttaa aaagaaacct tgaagctggc gaaattgttt cacaagtttt aacagttcaa
     3241 aaagcccttg atgctacaga agagcgcgta tctcaaattg tcataatggg tatcggtgaa
     3301 ccatttgaaa attatgatga aatgatggac tttttaagaa tcgtcaatga tgataacagt
     3361 ttaaatattg gtgcacgtca cattacagta tcaacatcag gtatcattcc tagaatatat
     3421 gactttgcgg atgaagatat tcaaattaat tttgctgtaa gcttacacgc cgcaaaagat
     3481 gaagtgcgat cacgcttgat gccaattaac cgtgcatata atgttgagaa gttaatcgaa
     3541 gcaattcaat attatcaaga aaaaacaaat cgtcgtgtta cttttgaata tggtctgttt
     3601 ggtggtgtga atgaccaact agaacatgca agagaattag cacatttaat aaaaggctta
     3661 aactgccatg ttaacttaat tcctgtcaac catgttccag aaagaaatta tgtgaaaacg
     3721 gctaaaaatg atatctttaa atttgaaaaa gaattaaaga gactaggaat taatgccaca
     3781 atacgtcgtg aacaaggttc ggatattgac gcagcttgtg gtcaattaag agcaaaggaa
     3841 cgacaagtag aaacgaggta aagacaaatg ctagaggcac aattttttac tgatactgga
     3901 caacatagag ataagaatga agatgcgggt ggtatttttt ataatcaaac taatcaacaa
     3961 cttttagttc tgtgtgatgg tatgggtggc cataaagcag gagaagttgc aagtaaattt
     4021 gttacagatg agttgaaatc ccgttttgaa gcggaaaatc ttatagaaca acatcaagct
     4081 gaaaattggt tgcgtaataa tataaaagat ataaattttc agttatatca ctatgcacaa
     4141 gaaaatgcag aatataaagg tatgggtaca acatgtgttt gtgcacttgt ttttgaaaaa
     4201 tcagttgtga tagcaaatgt cggtgattct agagcctatg ttattaatag tcgacaaatt
     4261 gaacaaatta ctagtgatca ctcatttgtt aatcatcttg ttttaacggg tcaaattacg
     4321 ccggaagaag catttacaca tccacaacgt aatattatta cgaaggtgat gggcacagat
     4381 aaacgtgtga gtccagattt gtttattaag cgattaaatt tttatgatta tttattatta
     4441 aattcagatg gattaactga ttatgttaaa gacaatgaaa ttaagcgttt gttagtaaaa
     4501 gaaggtacaa tagaagatca tggtgatcaa ttaatgcaat tggcattaga taaccattcg
     4561 aaagataacg ttactttcat actcgcggct attgaaggtg ataaagtatg ataggtaaaa
     4621 taataaatga acgatataaa attgtagata agcttggcgg cggtggcatg agtaccgttt
     4681 atcttgctga agatacgata cttaacatta aagttgcaat taaggcgatt tttataccac
     4741 ctagagaaaa agaagaaaca ttaaaacgtt ttgaacgaga agtacataac tcatcacagc
     4801 tatcacatca aaatatagta agtatgatcg atgttgatga agaagatgac tgttactact
     4861 tagtaatgga atatatcgaa ggtccgactt tgtctgagta tattgaaagt catgggccat
     4921 taagtgttga cacagcgatt aattttacga atcaaatatt ggatggcatt aaacatgcgc
     4981 atgatatgcg tattgtacat agagatatta agccacaaaa tatattaatt gacagcaata
     5041 aaacgttgaa aatatttgat tttggaattg ctaaagcttt aagtgagacg tctttaactc
     5101 agactaatca tgtgttaggt actgtgcagt acttttcgcc agaacaagca aaaggtgagg
     5161 caacggatga atgtacagat atttattcta taggtattgt gttatatgaa atgcttgttg
     5221 gtgaaccacc ctttaatgga gaaactgcag ttagcattgc gattaaacat attcaggatt
     5281 ctgtgccaaa tgtgacaaca gatgtacgta aggatattcc gcaatcttta agtaatgtca
     5341 ttttacgcgc tacagaaaaa gacaaagcga atcgttacaa aacaattcaa gaaatgaaag
     5401 atgatttgag tagtgtttta catgaaaatc gagcgaatga agatgtctat gaactcgata
     5461 aaatgaaaac gatagcggta cctttgaaaa aagaagatct agcaaagcat attagtgaac
     5521 ataagtcgaa tcaacctaaa cgtgaaacga cgcaagtacc tattgtaaat gggcctgctc
     5581 atcatcagca attccaaaag ccagaaggta cggtgtacga accaaaacct aaaaagaaat
     5641 caacacgaaa gattgtgctc ttatcactaa tcttttcgtt gttaatgatt gcacttgttt
     5701 cttttgtggc aatggcaatg tttggtaata aatacgaaga gacacctgat gtaatcggga
     5761 aatctgtaaa agaagcagag caaatattca ataaaaacaa cctgaaattg ggtaaaattt
     5821 ctagaagtta tagtgataaa tatcctgaaa atgaaattat taagacaact cctaatactg
     5881 gtgaacgtgt tgaacgtggt gacagtgttg atgttgttat atcaaagggc cctgaaaagg
     5941 ttaaaatgcc aaatgtcatt ggtttaccta aggaggaagc cttgcagaaa ttaaaatcgt
     6001 taggtcttaa agatgttacg attgaaaaag tatataataa tcaagcgcca aaaggataca
     6061 ttgcaaatca aagtgtaacc gcaaatactg aaatcgctat tcatgattct aatattaaac
     6121 tatatgaatc tttaggcatt aagcaagttt atgtagaaga ctttgaacat aaatccttta
     6181 gcaaagctaa aaaagcctta gaagaaaaag ggtttaaagt tgaaagtaag gaagagtata
     6241 gtgacgatat tgatgagggt gatgtgattt ctcaatctcc taaaggaaaa tcagtagatg
     6301 aggggtcaac gatttcattt gttgtttcta aaggtaaaaa aagtgactca tcagatgtca
     6361 aaacgacaac tgaatcggta gatgtaccat acactggtaa aaatgataag tcacaaaaag
     6421 ttaaagttta tattaaagat aaagataatg acggttcaac tgaaaaaggt agtttcgata
     6481 ttactagtga tcaacgtata gacattcctt taagaattga aaaaggaaaa acagcaagtt
     6541 atattgttaa agttgacggt aaaactgtag ctgaaaaaga agtcagctat gatgatgtat
     6601 aaatataatt gaagtaaatg taccgaggtt tctatttgga agtctcggta tttttatgtt
     6661 gagattgcgg tagttttaaa atgcttcatg tcatcatata caggtgagca ttgtctatca
     6721 attctgtatc actctcacaa tatttatatc atttgaaatg atcatttata tattaatttt
     6781 ccagtctttg atataataaa tgcagtaaaa ttaatcgaga ggtgccattt tgaagacagg
     6841 tcgaatagtg aaatcaatta gtggggtata tcaagtagac gttaatggcg aacgtttcaa
     6901 tacaaaacca cgaggattat ttagaaagaa aaaattttca ccggtagttg gtgatatagt
     6961 ggaatttgaa gttcaaaaca ttaacgaagg ttatattcat caagtgtttg agcgggaaaa
     7021 tgagttgaaa agaccacctg taagtaatat agatacacta gtaattgtaa tgagtgctgt
     7081 cgagccaaat ttttcaacgc aattattaga tcgattttta gttattgcac attcgtatca
     7141 gttaaatgcg agaattttgg tgactaaaaa agataaaaca ccaattgaaa agcagttcga
     7201 aataaatgag ttgttgaaaa tatatgaaaa tattggctat gagactgaat ttattggaaa
     7261 tgatgatgat cgaaaaaaaa ttgtagaagc ttggccagct ggacttatag tacttagtgg
     7321 tcaatcaggt gtcggtaagt ccactttctt aaatcattat cgtccagaac ttaatcttga
     7381 gacaaatgat atatcaaaat cattaaatcg aggaaagcat actacaagac atgtcgaact
     7441 attcgaacgt caaaacggtt atattgcaga cacacctgga ttcagtgctt tagattttga
     7501 tcatatagat aaagatgaaa taaaagatta ttttcttgaa ttaaatcgat atggtgaaac
     7561 atgtaagttt aggaattgta atcatatcaa agaacctaat tgtaatgtta agcatcaatt
     7621 agagataggg aatattgcgc aatttagata cgaccattat ttacaactat ttaatgaaat
     7681 ttcaaataga aaggttagat attaaatgac aaaactatat ccatcattat tatctgttga
     7741 ttttttggat ttacaacatg aattaaaacg acttgaagaa gcaggcgtcg acggagttca
     7801 ttttgatgtt atggatggtc aatttgtgcc taatatatct attggtttac caatattaga
     7861 tgcagtaaga aaaggcacaa cattacctat agacgtacat ttgatgattg aaaatccaga
     7921 aaagtatatt gcatcatttg cagaacatgg tgccgatatg atttcaattc atgtcgaatc
     7981 aacgcctcat attcatcgtg ctattcaaat gattaaacat ttagataaaa aagctggtgt
     8041 agtaattaat cctggtacac caatatcaca aattgaacct attttagaca ttgttgatta
     8101 tgtactagtg atgacagtta acccagggtt tggtggtcaa tcatttattg atcaatgcgt
     8161 agaaaaaata gcgggtctta atgctattaa aatggaacgt caattaaact ttgatattga
     8221 agttgatgga ggcgtaaata ccgatacagc gaaagtttgt gttgaaaatg gtgctacaat
     8281 gctagtaaca ggttcatttt tctttaaaca agaggattat aaaaaagtca cacaagcatt
     8341 gaaaggttga gtgtatatgc atataaattt attatgttct gatcgacact tgccgcaaga
     8401 tatttgggcc aaaagtaatg aaggtaaatg gggcggcgtt gatagaggtg ctttgatttt
     8461 attgaagcat caaattatcc cttttttctc agtgggagac tttgattcag tcagtaaaga
     8521 agaacgccaa cttctaacag aacagttaca aatcaaacca gttcaagctg aaaaagctga
     8581 tacggattta gctttagcgg ttgataaagc tgttgcactt ggatttgata gtattacaat
     8641 ttatggtgca acaggcggac gattagatca cttttttggg gcaattcagt tattattgaa
     8701 aaaagcatat tataaacatg atgttcatat agaagttatc gatcaacaaa ataaaattga
     8761 attattgcct aaaggtcaac atacagttga aaaagataag agttatccgt acatttcatt
     8821 tataccgatg actgatgatg tagaactttc tctagcaggt tttaaatata atttagctag
     8881 acaaatgctt aatataggtt ctactttaac tatttcaaat gaaattgagt ctttgcaagc
     8941 gaaagtaact gtacatgatg ggttgatttt gcaaattaga agtacagatt taaattaagt
     9001 atattcaaat ttgtgaggat ttttaataaa gtgcatgagt tatttaataa agtgacgttt
     9061 atagatagaa tttataacat aataatagat gaatcacgct gtaattaatg aagattatgg
     9121 cgtgatttat tattgaaagg aaaattgtag gtcctagtac attgatttat gtgccaaaat
     9181 cgatattgaa cccataagtc caatttgaca gagaaccatt attaaacgta ttaaccaaat
     9241 tatattgata gttcgaattt cactatgaac cattatgtat tgtttggtaa caaaaaaaga
     9301 actaagaggt tgagctctta gttcttaagt aaatgtgtcc tccacataag gtcacatttt
     9361 ttatgtgcaa tatatttatt aaactctagt tactttacca gattttaaag cacgtgcaga
     9421 aacccaaact tttttaggtt taccgtcaac taggattcta actttttgaa ggttagcgtt
     9481 ccatctacgt ttagtagagt ttaaagcgtg tgaacgtctg ttaccagtcg aagctttacg
     9541 acctgttacg aaacattgtt tacccatatg agtacctcct ttaataaata taaatacaca
     9601 taactactta tatacttaat taagatagca tagtttcatt tgaaaaacaa tgaataattt
     9661 tcacataaaa gtcaaaaata ctgagttttg tgatataatt gtagactgtg aagttatgta
     9721 gtatgatatt ttagagaaat aagtgaatga aacatttaaa atttttattt aatgatacta
     9781 catctattaa aagaaaacgc ctatagataa tcgtcatgag tgtaaattca gtttactcaa
     9841 aatataatag gtgatttaag cgtaagtcat tctgataagt tgtaccattg atattttata
     9901 aaaataatca atgaaactta aagcgtttat gactacacta agtggtaaaa ttttaaaagt
     9961 gattagggaa aacgaataat aaactttgaa atttaggagg gacaaagata tgacattaga
    10021 gatttcaaat gattacggta aaattgatat ttcaaacgaa gtgattgctt cggttgtagg
    10081 tggaaaggcc gttgaatgtt atggtattgt aggtatggca tctagacaac aagttagaga
    10141 tggtattgcg gaaatactag gacatgaaaa ttatgctaaa ggcatcaaag taactgaaaa
    10201 taatggcgta gtggatatag atatgtacat tattgtaagt tacggtgtga aaatatctga
    10261 agttgccaat aatgtacaat caacagtgaa atatactttg gaaaaatcac ttaatgtatc
    10321 agtaaattca atcaatatat atgtacaagg tgtacgtgtg aataatacag gcaagaaagc
    10381 ttaggaggac aacttgaaat gattagcaaa attaatggta aattatttgc cgatatgatt
    10441 atacaagggg cacaaaattt atctaacaat gcagatttgg tagattcttt gaatgtgtat
    10501 ccagtgccag atggtgatac aggaacaaat atgaatctta ctatgacttc aggtcgcgaa
    10561 gaagtagaga ataatttgtc gaaaaatatc ggcgaattag gtaaaacatt ctcgaaaggt
    10621 ttactaatgg gtgcaagagg taactctggt gtcatcttgt cacaattatt cagaggattt
    10681 tgtaaaaata ttgaaagtga atctgaaatt aattcaaaat tgttagctga aagttttcaa
    10741 gctggtgttg aaacggcata taaagctgtt atgaaaccag ttgaaggtac aatacttaca
    10801 gttgcaaaag atgctgcgca agctgcaata gaaaaagcaa ataatactga agattgtata
    10861 gaattaatgg agtacattat tgtaaaagcc aatgaatcac ttgaaaacac accaaactta
    10921 ttagctgtac ttaaagaagt tggtgttgtt gatagtggcg gtaaaggttt gttatgcgtt
    10981 tacgaaggat tcttaaaagc gcttaaaggt gaaaaagttg aagccaaagt tgcaaagata
    11041 gataaagatg aatttgtaca tgatgaacat gatttccatg gtgtaattaa tactgaagat
    11101 attatttatg gctattgtac tgaaatgatg gttcgttttg gaaagaataa aaaagccttt
    11161 gatgaacaag aattcaggca agatatgagt caatttggtg attctttatt agtcattaat
    11221 gatgaagaaa ttgtgaaagt tcacgtgcat accgaatacc caggtaaagt gtttaattat
    11281 ggtcaacaat atggtgaatt aattaaactt aaggttgaaa atatgagaga acagcaccgt
    11341 gaagtgattc gaaaagaaca gcacacagct aaaccgaaaa tggaaacggt tgaaacagca
    11401 attattacta tttctatggg tgaaggtatt tcagagatat ttaaatcaat gggtgccaca
    11461 catatcatta gtggtggaca aacgatgaat ccttctacag aagatatcgt taaagtcatt
    11521 gaacaatcaa aatgtaaacg tgcaattatt ttaccgaata ataaaaatat cttaatggca
    11581 agtgaacaag cagcgagtat tgttgatgca gaagctgttg ttattccaac gaaatctatt
    11641 cctcaaggta taagcgcact attccaatat gatgtggacg caacacttga agaaaataaa
    11701 gcgcaaatgg ctgattcagt aaataacgtt aaatctggtt cattaacgta cgctgttcgt
    11761 gatacgaaaa ttgatggcgt tgagattaaa aaagacgcgt ttatgggctt gattgaagat
    11821 aagattgtaa gcagccaaag tgatcaatta acaacggtta ctgagttgtt aaatgagatg
    11881 ttagcagaag atagtgaaat attgactgtg attattggtc aagatgcaga gcaagcagtt
    11941 acagataaca tgataaactg gatcgaagag caatatccag atgtagaagt ggaagttcat
    12001 gaaggtggac aaccaattta tcaatatttc ttttcagtag aataaaaatt taaaataaaa
    12061 aactaccaat gataaatcat cagttggtag ttttttattt tgctatttta gtgatattgc
    12121 gggttaaaag tatcgttctc gagttgctaa caatgtcatg ttcaacttag tcatgataaa
    12181 ataaataaca tactaaatga tacgtaaaat caaataaaac ataggtgatt tattttggct
    12241 aaagtaaact taatagaaag tccatattct cttttacaat taaaaggtat aggtcctaag
    12301 aaaatagaag tattgcaaca actaaatatt catacagtgg aagatcttgt tctttatttg
    12361 ccaactagat atgaagataa tacagtgatt gatttgaatc aagcagaaga tcaatctaac
    12421 gttacgatag aaggacaagt atatacagct ccagtagttg cattttttgg aagaaataaa
    12481 tcaaaattaa ccgttcattt aatggtaaat aatattgctg tcaaatgtat ttttttcaat
    12541 caaccgtatt taaaaaagaa aatcgaatta aatcaaacta taactgttaa aggtaagtgg
    12601 aatagggtta aacaggaaat tactggtaat agggttttct ttaattcaca agggacacaa
    12661 actcaagaaa acgcagatgt tcaattagaa ccagtctatc gtattaagga aggtattaaa
    12721 caaaagcaaa tacgagacca aattagacaa gcgttaaatg atgtgacaat tcatgaatgg
    12781 ttaactgatg aactaagaga aaaatataaa ttagagacct tggactttac tttgaacaca
    12841 ttacatcatc ctaaaagtaa agaggattta ttacgtgctc gtagaaccta tgcatttact
    12901 gaactgtttt tattcgaatt acgtatgcaa tggctaaata gattagaaaa gtcatctgac
    12961 gaagcaattg aaattgatta tgacatagac caagttaaat catttattga tcgtttacct
    13021 tttgaactaa ctgaagcaca gaaatccagt gttaatgaaa tttttagaga tttaaaagca
    13081 ccaatacgta tgcatcgatt acttcaaggt gatgtaggtt caggaaaaac agtagttgct
    13141 gcaatttgta tgtatgcgtt aaaaactgct ggttatcaat cagcattgat ggtaccaact
    13201 gaaattttag cagagcaaca tgctgaaagt ttaatggctt tatttggaga ttctatgaac
    13261 gttgcattgt taactgggtc agtaaaaggt aagaaacgaa agatactttt agaacaactt
    13321 gaaaatggta cgattgattg tttaattgga acccatgctt tgattcaaga tgatgtgatt
    13381 ttccataatg ttggtttagt aattacagat gaacaacatc gatttggtgt gaatcaacgc
    13441 cagcttttaa gagaaaaagg tgcaatgacg aatgtgttat ttatgacagc aacgccgata
    13501 ccaagaacac tagcaatatc agtttttggt gagatggatg tgtcttcaat taaacaatta
    13561 ccaaaaggtc gtaaacctat cattactact tgggcaaagc atgagcaata cgataaagtt
    13621 ttgatgcaaa tgacctcaga gttgaaaaaa ggtcgtcaag catatgtcat ttgcccgcta
    13681 atagaaagtt ctgagcatct cgaagatgtt caaaatgttg tcgcattgta cgagtcttta
    13741 caacagtatt atggtgtttc ccgtgtaggg ttattgcatg gtaagttatc tgccgatgaa
    13801 aaagatgagg tcatgcaaaa gtttagtaat catgagataa atgttttagt ttctactact
    13861 gttgttgaag taggtgttaa tgtaccgaat gcaactttta tgatgattta tgatgcggat
    13921 cgctttggat tatcaacttt acatcagtta cgcggtcgtg taggtagaag tgaccagcaa
    13981 agttactgtg ttttaattgc atcccctaaa acagaaacag gaattgaaag aatgacaatt
    14041 atgacacaaa caacggatgg atttgaattg agtgaacgag acttagaaat gcgtggtcct
    14101 ggagatttct ttggtgttaa acaaagtgga ttgccagatt tcttagttgc caatttagtt
    14161 gaagattatc gtatgttaga agttgctcgt gatgaagcag ctgaacttat tcaatctggc
    14221 gtattctttg aaaatacgta tcaacattta cgtcattttg ttgaagaaaa tttattacat
    14281 cgtagttttg actaattgcc atgctgattt gtcaatttga gtgcaacact tcgttaattg
    14341 agtgatatga cacttgaact atttaaatgt aaagtggtat tttaacaatt tataaatttt
    14401 cgactaaata atagctaaat attacagtta tttgttgagt cggttaaata gaaagtgtta
    14461 tgatatgtga ggaatgttta agactaggta ctaaaaaatg aggggtgaga cgttgaaact
    14521 aaagaaagat aaacgtagag aagcaatcag acaacaaatt gatagcaatc ccttcatcac
    14581 agaccatgaa ctaagcgact tatttcaagt gagtatacaa acaattcgtt tagatcgcac
    14641 ttatttaaac ataccagaat taaggaagcg tattaaatta gttgctgaaa agaattatga
    14701 ccaaataagt tctattgaag aacaagaatt tattggtgat ttgattcaag tcaatccaaa
    14761 tgttaaagcg caatcaattt tagatattac atcggattct gtttttcata aaactggaat
    14821 tgcgcgtggt catgtgctgt ttgctcaggc aaattcgtta tgtgttgcgc taattaagca
    14881 accaacagtt ttaactcatg agagtagcat tcaatttatt gaaaaagtaa aattaaatga
    14941 tacggtaaga gcagaagcac gagttgtaaa tcaaactgca aaacattatt acgtcgaagt
    15001 aaagtcatat gttaaacata cattagtttt caaaggaaat tttaaaatgt tttatgataa
    15061 gcgaggataa aattatggtt aaattagcaa ttgatatgat gggtggcgac aatgcgcctg
    15121 atatcgtatt agaagccgta caaaaggctg ttgaagactt taaagatcta gaaattatac
    15181 ttttcggtga cgaaaaaaag tataatctga accatgaacg aatcgaattt agacattgtt
    15241 ctgaaaagat tgaaatggaa gatgagcctg ttagagcgat taaacgtaaa aaagatagct
    15301 caatggtaaa aatggctgaa gctgtgaaat ctggtgaagc agatggatgt gtgtcagcag
    15361 gtaatactgg tgctttaatg tcagctggtt tattcattgt tggacgtatt aaaggtgtag
    15421 ctagaccggc tttagtagta acattgccaa cgattgatgg aaaaggtttt gtctttttag
    15481 acgttggtgc aaatgctgat gctaaacctg aacacttatt acagtatgcg caactagggg
    15541 atatttatgc tcaaaaaatt agaggtattg ataatccgaa aatctcatta ttaaatatag
    15601 gaaccgagcc agctaaaggt aatagtttaa cgaaaaaatc atatgagtta ttaaatcatg
    15661 atcattcatt gaattttgtt gggaatattg aagcgaagac attaatggat ggcgatacag
    15721 atgttgtagt taccgatggc tatactggga acatggtcct taaaaattta gaaggtactg
    15781 caaaatcaat cggtaaaatg ttaaaagata cgattatgag tagtactaaa aataaattag
    15841 caggtgcaat attgaagaaa gatttagctg aattcgctaa aaagatggat tactcagaat
    15901 acggtggttc cgtattatta ggattggaag gtactgtagt taaagcacac ggtagttcaa
    15961 atgctaaagc tttttattct gcaattagac aagcgaaaat cgcaggagaa caaaatattg
    16021 tacaaacaat gaaagagact gtaggtgaat caaatgagta aaacagcaat tatttttccg
    16081 ggacaaggtg cccaaaaagt tggtatggcg caagatttgt ttaacaacaa tgatcaagca
    16141 actgaaattt taacttcagc agcgaacaca ttagactttg atattttaga gacaatgttt
    16201 actgatgaag aaggtaaatt gggtgaaact gaaaacacac aaccagcttt attgacgcat
    16261 agttcggcat tattagcagc gctaaaaaat ttgaatcctg attttactat ggggcatagt
    16321 ttaggtgaat attcaagttt agttgcagct gacgtattat catttgaaga tgcagttaaa
    16381 attgttagaa aacgtggtca attaatggcg caagcatttc ctactggtgt aggaagcatg
    16441 gctgcagtat tgggattaga ttttgataaa gtcgatgaaa tttgtaagtc attatcatct
    16501 gatgacaaaa taattgaacc agcaaacatt aattgcccag gtcaaattgt tgtttcaggt
    16561 cacaaagctt taattgatga gctagtagaa aaaggtaaat cattaggtgc aaaacgtgtc
    16621 atgcctttag cagtatctgg accattccat tcatcgctaa tgaaagtgat tgaagaagat
    16681 ttttcaagtt acattaatca atttgaatgg cgtgatgcta agtttcctgt agttcaaaat
    16741 gtaaatgcgc aaggtgaaac tgacaaagaa gtaattaaat ctaatatggt caagcaatta
    16801 tattcaccag tacaattcat taactcaaca gaatggctaa tagaccaagg tgttgatcat
    16861 tttattgaaa ttggtcctgg aaaagtttta tctggcttaa ttaaaaaaat aaatagagat
    16921 gttaagttaa catcaattca aactttagaa gatgtgaaag gatggaatga aaatgactaa
    16981 gagtgcttta gtaacaggtg catcaagagg aattggacgt agtattgcgt tacaattagc
    17041 agaagaagga tataatgtag cagtaaacta tgcaggcagc aaagagaaag ctgaagcagt
    17101 agtcgaagaa atcaaagcta aaggtgttga cagttttgcg attcaagcaa atgttgccga
    17161 tgctgatgaa gttaaagcaa tgattaaaga agtagttagc caatttggtt ctttagatgt
    17221 tttagtaaat aatgcaggta ttactcgcga taatttatta atgcgtatga aagaacaaga
    17281 gtgggatgat gttattgaca caaacttaaa aggtgtattt aactgtatcc aaaaagcaac
    17341 accacaaatg ttaagacaac gtagtggtgc tatcatcaat ttatcaagtg ttgttggagc
    17401 agtaggtaat ccgggacaag caaactatgt tgcaacaaaa gcaggtgtta ttggtttaac
    17461 taaatctgcg gcgcgtgaat tagcatctcg tggtatcact gtaaatgcag ttgcacctgg
    17521 ttttattgtt tctgatatga cagatgcttt aagtgatgag cttaaagaac aaatgttgac
    17581 tcaaattccg ttagcacgtt ttggtcaaga cacagatatt gctaatacag tagcgttctt
    17641 agcatcagac aaagcaaaat atattacagg tcaaacaatc catgtaaatg gtggaatgta
    17701 catgtaatat atttgagcta aagctcattg acgcagtggt tgactggtca tccaatggag
    17761 aattgtctga cctagtcaac tttgcggggg aaattctaag caacctagat aaggttccag
    17821 aatttctccc taagaaacac taatcaataa attgataagt gtttctaaaa tttctacttg
    17881 ttttttagaa tttaaaatgg gaaaatatag tagtctatgt ataggcattt ttaaaggagg
    17941 tgaatcgacg tggaaaattt cgataaagta aaagatatca tcgttgaccg tttaggtgta
    18001 gacgctgata aagtaactga agatgcatct ttcaaagatg atttaggcgc tgactcactt
    18061 gatatcgctg aattagtaat ggaattagaa gacgagtttg gtactgaaat tcctgatgaa
    18121 gaagctgaaa aaatcaacac tgttggtgat gctgttaaat ttattaacag tcttgaaaaa
    18181 taataaatct tacatctggg tcgtcagtat tgtcgactca gtttttttct ttaattatca
    18241 atagttttaa cgtaaaatta aagatgattc aagagcaaca cataaaggag ataaaataat
    18301 gtctaaacaa aagaaaagtg agatagttaa tcgttttaga aagcgctttg atactaaaat
    18361 gacagagtta ggctttactt atcaaaatat tgatttatac caacaagcat tttcgcattc
    18421 gagttttatt aatgatttta atatgaatcg tttagaccat aatgagcgtt tagagttttt
    18481 gggtgatgcg gtattagaat tgacggtttc acgatattta tttgataaac atcccaactt
    18541 gccagaaggg aatttaacaa aaatgcgtgc cactattgta tgtgagccct cacttgtaat
    18601 atttgcgaat aaaattggat tgaacgaaat gattttactt ggtaaaggtg aagagaaaac
    18661 agggggacgt acaagaccat cattaatatc agatgcattc gaagcattta ttggggcatt
    18721 gtatttggat caaggactag atatagtttg gaaatttgct gagaaagtca ttttcccaca
    18781 tgtagaacaa aatgagttat taggcgtggt agattttaaa acacaattcc aagaatatgt
    18841 gcaccagcaa aataaaggtg atgtaaccta taatttaata aaagaagagg gaccggcaca
    18901 tcatcgtcta ttcacttcag aagttattct gcaaggggaa gcaatagctg aaggtaaagg
    18961 gaaaacgaaa aaagaatcag aacaacgtgc tgctgaaagt gcctataagc aattaaaaca
    19021 aattaaatag aaatttatat gatacgacat ataggtgttc gatttaggat ttaaggaaga
    19081 atttttaata ttttatggaa caacttcgaa atttaatata caaatactaa aatatcgtat
    19141 acatgtgttc tttaaaattg tgataaggag tttaggatgg tttatttaaa atcaatagat
    19201 gccattggat ttaagtcttt tgcagatcaa accaatgttc aattcgataa aggtgtaact
    19261 gcaattgttg gtccaaatgg aagcggtaaa agtaatatta cagatgctat taaatgggtg
    19321 ttgggtgaac aatcggctaa atcattacgt ggctcaaaaa tggaagatat tatcttctca
    19381 ggtgcagaac atcgcaaagc tcaaaattat gctgaagtac agttaagatt agataatcat
    19441 tctaaaaagc tcagtgttga tgaaaacgaa gttattgtaa caagaagatt gtatcgaagt
    19501 ggtgaaagtg agtactacat aaataatgac cgtgcaagat taaaagatat tgccgattta
    19561 tttttagatt ctggattggg aaaagaagcg tatagcatta tctcgcaagg tagagttgat
    19621 gaaatactaa atgctaaacc aattgataga cgtcaaatta ttgaagaatc ggctggtgta
    19681 cttaaatata aaaaacgtaa ggctgaatca ttaaataaac ttgaccaaac agaagataat
    19741 ttaacgagag tagaagacat tttatatgat ttggaaggtc gcgtagaacc tctaaaagag
    19801 gaggcagcta tagctaaaga atataagaca ctttcacatc aaatgaaaca tagtgacatt
    19861 gtagttacag tgcacgatat tgatcaatat acaaatgaca atagacaatt agatcaacgt
    19921 ttaaatgatt tacaaggcca acaagcaaat aaagaagctg acaagcaacg tttaagccaa
    19981 caaattcaac aatataaagg taaacgtcat caacttgata atgatgttga atcgcttaat
    20041 tatcaattag taaaagctac ggaagccttt gaaaaatata cgggacaatt aaatgttttg
    20101 gaagaacgta agaaaaatca atctgaaaca aatgcacgat atgaagaaga acaagaaaat
    20161 ttaatggagc ttttagaaaa tatatcaaat gagatttctg aagctcaaga tacttataag
    20221 tctctgaaaa gtaaacaaaa agaactcaat gctgtcattc gtgaacttga agaacaacta
    20281 tatgtttcag acgaagcaca tgatgaaaaa ttggaagaaa ttaaaaacga atactataca
    20341 ttaatgtcag agcaatcaga tgttaacaat gatattcgtt ttttaaagca tactatagaa
    20401 gagaatgagg ctaaaaaatc aagactagat tctcgattag ttgaagtttt tgagcaattg
    20461 aaagatattc agggtcaaat aaaaacgaca aaaaaagaat atcaacagac caacaaagaa
    20521 ctttctgctg tagataaaga aattaaaaat atagaaaaag acctcactga tacaaaaaaa
    20581 gcacaaaatg aatacgaaga gaaattgtat caagcatatc gatataccga aaaaatgaaa
    20641 acacgtattg atagtttggc aacgcaagag gaagaatata cttatttttt caatggcgtc
    20701 aaacatattt tgaaagctaa aaataaagaa ttaaagggta tttatggtgc agttgcggaa
    20761 attattgatg tgccatctaa attaactcag gcaattgaaa cagcattagg tgcttcatta
    20821 caacatgtca ttgtagattc agaaaaagat ggacgccagg ctattcaatt tttaaaagaa
    20881 cgtaatttag gtcgtgcgac gtttttacca ttaaatgtta tacagagtag agtggtagcg
    20941 actgatatta aatctattgc taaagaggca aacggattta ttagtatcgc ttcggaagca
    21001 gttaaagtag caccagaata tcaaaatatt atcgggaatt tattaggtaa tacgattatc
    21061 gttgatcatt taaagcatgc aaatgaattg gcacgtgcga ttaaatatcg aactcgtatt
    21121 gttactttgg aaggtgatat tgtaaatcct ggtggttcta tgactggtgg tggcgctcgt
    21181 aagtcaaaaa gtattctgtc tcaaaaagac gagttgacaa caatgagaca ccaattagaa
    21241 gattacttgc gtcaaacaga atcatttgaa caacaattta aagagttgaa gataaaaagt
    21301 gatcaattaa gtgaactgta ttttgaaaaa agtcaaaagc ataatacact taaagagcaa
    21361 gtgcatcatt ttgaaatgga gctcgataga ttaactacac aagaaacaca aataaaaaat
    21421 gatcatgaag aattcgaatt tgaaaaaaat gatggttata cgagtgacaa aagtcgacaa
    21481 actttgagtg aaaaagaaac ttatctagaa agtattaaag catctttaaa acgactagaa
    21541 gatgaaattg aacgctacac aaaactttct aaagaaggta aggaaagcgt tactaaaaca
    21601 caacaaacct tacatcagaa acaatctgat cttgctgtgg ttaaagagcg tattaaaaca
    21661 caacaacaga caatagatcg attaaataat caaaatcaac aaactaaaca tcaattaaaa
    21721 gatgttaaag aaaaaattgc attctttaat tcggatgaag tgatgggcga acaagctttt
    21781 caaaatatta aagatcaaat taatggtcaa caagaaacga gaacacgctt atcagatgaa
    21841 ttagataaat tgaaacaaca acgtattgag ttgaatgaac aaatcgatgc gcaagaagct
    21901 aaactacaag tttgtcacca agatatttta gctatcgaaa atcactacca agatattaaa
    21961 gctgaacaat caaagctaga tgtattaatt catcatgcga tagatcattt aaatgatgaa
    22021 tatcaattga ctgttgaacg tgcgaaatct gaatatacga gtgatgaatc gattgacgca
    22081 ttacgtaaaa aagttaagtt aatgaagatg tcgattgatg aactaggtcc tgtaaactta
    22141 aatgcaattg aacaatttga agagttaaat gaacgttata catttttaag tgaacaacgt
    22201 acagatcttc gtaaagctaa agaaacatta gagcaaatta taagtgaaat ggatcaagag
    22261 gttactgaaa gatttaaaga aactttccat gctattcaag gacattttac agctgtgttc
    22321 aaacaattgt ttggtggagg cgatgcagaa ttgcaattaa ctgaagccga ttatttaaca
    22381 gctggtattg atattgtggt acaaccaccg ggtaaaaagt tgcaacattt atcgttactg
    22441 agtggtggtg agcgtgcatt aactgctatt gctttactat ttgcaatttt aaaagtaaga
    22501 tctgcacctt ttgttatatt agatgaggtt gaagctgcac tagatgaagc aaatgttatt
    22561 agatacgcaa aatatttaaa tgagttatca gacgaaacac aattcattgt tattacacac
    22621 cgtaaaggaa caatggaatt tgcagatagg ttatacggtg taacaatgca agaatcaggt
    22681 gttactaaac ttgtgagtgt gaatttaaat acaatagatg atgtgttgaa ggaggagcaa
    22741 taatgagctt ttttaaacgc ttaaaagata agtttgcaac aaataaagaa aatgaagaag
    22801 ttaaatcctt aacagaagaa caaggtcaag acaaattaga agatacacat tctgaaggtt
    22861 caacgcagga cgcaaatgat ttagcagaaa atgctgaagt gaaaaagaag ccacgcaagt
    22921 tgagtgaagc ggattttgat gacgatggct taatatcaat tgaagatttt gaagaaattg
    22981 aagctcaaaa aatgggtgct aaatttaaag caggactcga aaaatctcgt caaaatttcc
    23041 aagaacaatt aaataatttg atagcgagat atcgtaaagt agatgaagac ttttttgaag
    23101 ctttagaaga aatgttaatc actgcagacg tcggttttaa tacagtgatg acgttaactg
    23161 aagaattacg tatggaagca caacgacgta atattcaaga tactgaagat ttgcgtgaag
    23221 tcattgttga aaaaatcgta gagatttacc atcaagaaga tgataattca gaagctatga
    23281 acttagaaga tggtcgttta aatgtcattt taatggttgg tgtgaatggt gttggtaaaa
    23341 caacaacaat tggaaaatta gcttaccgat ataaaatgga aggtaaaaaa gtaatgttag
    23401 ctgcgggcga tacttttaga gcgggtgcta ttgatcaatt gaaagtttgg ggcgaacgtg
    23461 ttggtgtaga cgtaattagc caaagtgaag gttctgatcc agctgctgtt atgtatgatg
    23521 cgattaatgc cgctaaaaac aaaggtgttg atattttaat ctgtgatacc gctggacgtt
    23581 tacaaaataa aacaaatcta atgcaagaat tagaaaaagt taagcgtgta attaatcgag
    23641 cagtgccaga tgcgcctcat gaagcattac tatgtttaga tgctacaact ggtcagaatg
    23701 cgttgtcaca agctagaaac tttaaagaag taacaaatgt tacaggtatt gtattaacga
    23761 aattagatgg tacagccaaa ggtggtatcg tattagccat tcgtaatgaa ttgcacatcc
    23821 cagttaaata tgtaggttta ggtgagcaat tagatgactt acaaccattt aaccctgaaa
    23881 gttatgtcta cggcttattc gctgatatga ttgaacaaaa tgaagaaata acaacagttg
    23941 aaaatgatca aattgtaaca gaagaaaagg acgataatca tgggtcaaaa tgatttagtt
    24001 aaaacgttac gaatgaatta tttgtttgat ttttatcaat ccttattgac gaataaacaa
    24061 cgtaattatt tggaattatt ttatcttgaa gattattctt taagtgaaat cgcagatact
    24121 tttaatgtga gtagacaagc agtttatgat aatataagaa gaactggcga tttagttgaa
    24181 gattatgaaa agaaattgga attataccag aaatttgagc aacgccgaga aatatatgat
    24241 gaaatgaaac aacatttaag taatccagaa caaatacaac gttatattca acaattagaa
    24301 gacttagaat agatataaat tgagggagga catcgatatg gcatttgaag ggttatcaga
    24361 acgcttgcaa gcgacgatgc aaaaaatgcg tggtaagggt aaacttactg aagctgatat
    24421 aaagataatg atgcgtgaag taagattagc gttacttgag gctgacgtaa actttaaagt
    24481 ggtaaaagaa tttattaaaa cagtatcaga acgcgcatta ggttccgatg taatgcaatc
    24541 attaacacca gggcaacaag ttattaaaat agttcaagat gaattaacgc agttgatggg
    24601 tggagaaaat acgtcgatta atatgtcaaa taaaccacct actgttgtta tgatggttgg
    24661 tttacaaggt gctggtaaaa caacaactgc aggtaaatta gcattattga tgcgtaaaaa
    24721 atacaacaaa aaacctatgt tagttgcagc agatatttat cgtccagcag cgataaatca
    24781 attacaaaca gtagggaaac aaattgatat tcctgtatac agtgaaggag atcaagtaaa
    24841 gccacaacaa attgtaacta atgcattaaa acatgctaaa gaagaacatt tagactttgt
    24901 aatcattgat acagcaggtc gattacacat cgatgaagca ttgatgaacg aattaaaaga
    24961 agtaaaagac attgctaaac caaacgaaat tatgttagtt gtcgattcaa tgacgggtca
    25021 agatgctgtc aatgttgcag aatcttttga cgatcaactt gatgtcacag gtgttacctt
    25081 aactaaatta gatggtgata cacgtggtgg tgcagcttta tctattcgtt cggtgacaca
    25141 aaaaccaatt aaatttgttg gtatgagtga aaagttagat ggtttagagc tattccatcc
    25201 tgaacgtatg gcatcacgta ttttaggtat gggtgatgtg ttaagtttaa ttgaaaaagc
    25261 gcaacaagat gtggatcaag aaaaagcaaa agatttagag aaaaagatgc gtgagtcatc
    25321 gtttacttta gatgattttt tagaacaact tgatcaggtg aaaaatctag gaccactgga
    25381 tgatattatg aaaatgattc caggtatgaa taaaatgaaa gggctagata agcttaatat
    25441 gagtgaaaag caaattgatc atattaaagc gattatccag tcaatgacgc cggctgaaag
    25501 aaacaatcca gacacattga atgtatcacg taaaaagcgt attgctaaag ggtctggtcg
    25561 ttcattacaa gaagtcaatc gtttgatgaa acaatttaac gatatgaaga aaatgatgaa
    25621 acagttcact ggtggcggta aaggtaaaaa aggtaaacgc aatcaaatgc aaaatatgtt
    25681 aaaaggtatg aatttaccgt tttaatgttt aatataacac gctgattttt gttgcaatga
    25741 gatgtgcatc ccgaaagtta tactaaagaa tataacttta tggggtgcat atttttagat
    25801 acacaataat aattaaaaac tgaaattgct gatttgctag aacatgaggt tattgttgct
    25861 aatattaata agttatattg ggggaacgtg tgcggtagaa gtggtaccat tcatgtcctt
    25921 acgagataaa ttaacttaac acgtaggtgg tgaaatttac tatgaatttt tataacctat
    25981 taacagtcta atttagtaat cacatagtta ttattgtaag aaaaaggttc aataattttc
    26041 ctggtaaaga aaaaactctt tacaaacatt catacacctg ttaatattat ttcttgtaga
    26101 aaataaaaat taaaacatga cttaaaggag attttataaa tggcagttaa aattcgttta
    26161 acacgtttag gttcaaaaag aaatccattc tatcgtatcg tagtagcaga tgctcgttct
    26221 ccacgtgacg gacgtatcat cgaacaaatc ggtacttata acccaacgag cgctaatgct
    26281 ccagaaatta aagttgacga agcgttagct ttaaaatggt taaatgatgg tgcgaaacca
    26341 actgatacag ttcacaatat cttatcaaaa gaaggtatta tgaaaaaatt tgacgaacaa
    26401 aagaaagcta agtaatttag cgtaaaattg ttctaacaat aagaataact cgtttacact
    26461 gacagttatt actcaatgat acgttgggaa tatcacatgt tagtaatata gaacgtattg
    26521 ggtaccataa tggtgccctt tttctttgaa ttattttcaa ttaaaataga agtgttcaaa
    26581 gcatagagtt ggaggtaata gaatgagagt tgaagttggt caaattgtta acacacatgg
    26641 tattaaaggt gaaattaaag taaaatccaa ttcagacttt acagacgttc gttttcaacc
    26701 cggtcaagtg ctgacagttg tgcataacaa taacgacctt gaatatactg ttaagtcaca
    26761 tagagtgcat aaagggcttc atatgcttac atttgaaggt attaataata ttaatgatat
    26821 tgagcattta aaagggagtt ctatttatca agagcgtgat catgaagata tcgtacttga
    26881 ggaaaatgaa ttttattatt cagatattat aggatgtaca gtttttgatg atcaagaaac
    26941 accaataggt cgtgtaatta atatatttga aacaggtgcg aatgatgtgt gggtgattaa
    27001 aggatctaaa gaatatttga ttccttatat tgctgatgtt gtaaaagaag tggatgttga
    27061 aaataaaaaa attatcatca cgccaatgga aggattgttg gattaatgaa aattgattat
    27121 ttaactttat ttcctgaaat gtttgatggt gttttaaatc attcaattat gaaacgtgcc
    27181 caagaaaaca ataaattaca aatcaatacg gttaatttta gagattatgc aattaacaag
    27241 cacaaccaag tagatgatta tccgtatggt ggcggacaag gtatggtgtt aaagcctgaa
    27301 cctgttttta atgcgatgga agacttagat gtcacagaac aaacacgcgt tattttaatg
    27361 tgtccacaag gcgagccatt ttcacatcag aaagctgttg aattaagcaa ggccgaccac
    27421 atcgttttca tatgcggaca ttatgaaggt tacgatgaac gtatccgaac acatcttgtc
    27481 acagatgaaa tatcaatggg tgactatgtt ttaactggtg gagaattgcc agcgatgacc
    27541 atgactgatg ctattgttag actgattcca ggtgttttag gtaatgaaca gtcacatcaa
    27601 gacgattcat tttcagatgg gttattagag tttccgcaat atacacgtcc gcgtgaattt
    27661 aagggtctaa cagttccaga tgttttattg tctggaaatc atgccaatat tgatgcatgg
    27721 agacatgagc aaaagttgat ccgcacatat aataaaagac ctgacttaat tgaaaaatat
    27781 ccattaacta atgcagataa gcaaatatta gaaagatata aaataggatt gaaaaaaggt
    27841 tagtattgtg ctaacataat ctgagtgtgg aaacactaaa atcactatga tccgctgcta
    27901 tatatttgtc gaggcaagaa cataggttga agaggagaat ttataatgac aaatcacaaa
    27961 ttaatcgaag cagtaactaa atcacaatta cgtacagact taccaagttt ccgtcctggt
    28021 gatactttac gtgtacacgt acgtatcatt gagggtactc gtgagcgtat ccaagtattc
    28081 gaaggcgttg taattaaacg tcgtggcggt ggcgtttctg aaacgtttac agttcgtaaa
    28141 atttcatcag gtgttggcgt ggaacgtaca ttcccattac acacaccaaa aattgaaaaa
    28201 atcgaagtta aacgtcgtgg taaagtacgt cgtgctaaat tatattactt acgtagttta
    28261 cgtggtaaag ctgctagaat ccaagaaatt cgttaatcag catttaaaca aagctatgta
    28321 tgagtcaaat tcgactcaaa caataaagcc atctaggtca cttttatgga gtgatataga
    28381 tggctttttt tgctgtttag ttaatgtaaa gttgataatg taattgttta ttccttctct
    28441 attcataacg tgtttgctca aaatggttat ataaacaaaa atctactaag tgccattgaa
    28501 aaggacttag tagatttatt aaatatatgc gtagcaacat tatttttgtc ttgcccatct
    28561 cgtgaaaata atactacata taatgccaaa tatagtaatt gttataagta aataatagta
    28621 tggtggggta tagctcaatt gaatctttgt tatattttta ggtgctttaa tgccggtcat
    28681 aacaccattt acttgttcaa ctttaagact ttgatcacct gatgtcgctt tcataccttg
    28741 attatatgct gttggcaaaa caatataccc agatgaattt ttatttttag taatagtata
    28801 accatgcttt gtcttactaa ctttgacagc ttctaatgaa tttgaagcgt ctttaagcgt
    28861 ggtataatct tcgccgtata tcccttttaa atttactcga tacttacctt taggcaatga
    28921 taatctaatt ctatctggag ctttaatgcg tatcgttacg ggtgttacaa cgcgtcgata
    28981 tttataagtg agtttatttc tttcttgtgt atattcattc actttaacat catgagcttt
    29041 atccggcgaa agtaattcta aatccatttc aaaatacaaa tctttaaatt gattagaaac
    29101 tgattttggc aactgtacag ttagaccacc attattttgt ttaacttgta ataaatgttt
    29161 tgtaggagat tgccaggctg cactatttaa tttaattgtt gaatctgata gtaaattttt
    29221 attggcttta aaatgtgtat taacatcttt aatattgtta gaaacaatcc cttgcaacat
    29281 tgcttgttct ttatctaatg gagattttaa ttctttattg gaaaagacct tatttgtaat
    29341 atgtgcactt ggataatgga tggtattttt agaatgaatc caacgaactt tattgtcttt
    29401 gtgttcagac ttaattttaa atccatatgg taagttgtca tcatgattca ctctaattcg
    29461 atcattaaca ttccaaagtg atagtaaatt ttgacgattg ccaagtaatc tataagtgct
    29521 gtttttatcg attggcatat taatttggag tgtcttgtca taatatttta aaatgtctcc
    29581 attaaaaata ctagaatata atgaaatgcc attataatga tatataaatg gtgaatttaa
    29641 tgcatagtct gacatataat caatgcgatt aaatgagcct gttgcatttt gatttatctt
    29701 ttttataagc tggtttacat agttactatg gtaatcatgt tgtttcaacg ttgataatga
    29761 ttgttgataa ggtttgattg ccatgttttt gttgttatct aaaatgacga tttgttgaat
    29821 cataacgatt aatactaata ttgcaacggt taatttttta taacgccata aactaaattt
    29881 taaaataacg gcaagcacta ttagcaggat aatacctact ataagtgcaa gtgggtgtgt
    29941 cggtgatagt aatacataaa gtattgcgat gatgcatacg ggtattgttc tgattaaata
    30001 atatttcata tttaatgttg ataaatgttg aataaacaat ccgcaaagag cacttgatga
    30061 tagtgctaag atatacaccc aacgcctttc tggaaatgaa aaaccattaa aagcactgtc
    30121 gaaatactgt gataatgaac ctataaataa tatccatgtt actattgcga aaagtctata
    30181 aaagtaaaaa cgatacagtt tgaatgacaa taatgcaacg atagtaagaa ttgaaatcgt
    30241 aatataaaat ccatcgctaa agaaaaaata atgataatca agtggtgtca aaaacggtat
    30301 atcaacattg ggattttgct ttctgtcatt ttccaaaaac gcagaaatgc cagtgaataa
    30361 accaaataca cttgataaca cactcaaaac tgtagcagat atgacgcaaa ttaatttttg
    30421 tgttctagag acaatgtcat atttgtaagt gaaaatgagt cgatataaat agtagcaacc
    30481 tataataata gcttgataat aactgaaata aaaattgcta aatagtgtta aggctatcgc
    30541 aacaatgaaa ataccgattt tgcgttgttg aaaatatctt tccaaaccaa gaatcgataa
    30601 tggcaataaa tataataaat ttccataaaa tgaccaagta aaattaaagt atataacgac
    30661 agttgacatg ccgtataaaa tcgtagcgat catatttgct gagcgtttaa agtgtaatat
    30721 tttaaataag tagaaggtca cgacaaatgt tatgatagct cgtatcatag ccataataag
    30781 ttggtttgtc ggccaaaaat gtattgtcgt cggattaaat ataccaaccg tttctcctat
    30841 tttaatgaat agaaaattta gccacattaa aggtgacagc gaataataat atgatagtcc
    30901 tttcatataa tcgccaccta atccaaacga tgcatcatat aaactagaaa aactacgtag
    30961 atgttcatac aaatacattt gaaatggcat catttgacgg aatccatctc cagccccgct
    31021 aaaaacagta ccattcacaa tataatcata gatatgagta gaaaataaaa taagcgttaa
    31081 tattacacta atgaaagtta taacaaagaa ttgtttgacg tttgaattta gccacttttt
    31141 taacacaaca ttatcctcaa ctttcaaatt taaaattaag tttaactgaa actaaagtta
    31201 atgaggttct tgataggtaa agacgaagat gactgtggaa cagatacctt atcatagtta
    31261 cttaaacttt ggatcatttt cagtttatca ttaaacaaat atattgaata ataaaaatgt
    31321 catactgata aagatgaatg tcacttaata agtaacttag atttaacaaa tgatgatttt
    31381 taattgtaga aaacttgaaa taatcactta tacctaaatc taaagcattg ttaagaagtg
    31441 tgacaatgtt aaaataaata tagttgaatt aatgaatttg ttctataatt aacaggttat
    31501 agattttaat aatgagaaaa gaattgacga aagtaaggtg aattgaatgg ttattcaatg
    31561 gtatccagga catatggcga aagccaaaag agaagtaagt gaacaattaa aaaaagtaga
    31621 tgtagtgttt gaactagtag atgcaagaat tccatatagt tcaagaaacc ctatgataga
    31681 tgaagttatt aaccaaaaac cacgtgttgt tatattaaat aaaaaagata tgtctaattt
    31741 aaatgagatg tcaaaatggg aacaattttt tattgataaa ggatactatc ctgtatcagt
    31801 ggatgctaag cacggtaaaa atttaaagaa agtggaagct gcagcaatta aggcgactgc
    31861 tgaaaaattt gaacgcgaaa aagcgaaagg acttaaacct agagcgataa gagcaatgat
    31921 cgttggaatt ccaaatgttg gtaaatccac attaataaat aaactggcaa agcgtagtat
    31981 tgcgcagact ggtaataaac caggtgtgac caaacaacaa caatggatta aagttggtaa
    32041 tgcattacaa ctattagaca caccagggat actttggcct aaatttgaag atgaagaagt
    32101 cggtaagaag ttgagtttaa ctggtgcgat aaaagatagt attgtgcact tagatgaagt
    32161 tgccatctat ggattaaact ttttaattca aaatgattta gcgcgattaa agtcacatta
    32221 taatattgaa gttcctgaag atgcagaaat catagcgtgg tttgatgcga tagggaaaaa
    32281 acgtggctta attcgacgtg gtaatgaaat tgattacgaa gcagtcattg aactgattat
    32341 ttatgatatt cgaaatgcta aaataggaaa ttattgtttt gatattttta aagatatgac
    32401 tgaggaatta gcaaatgacg ctaacaatta aagaagttac gcagttgatt aatgcggtta
    32461 atacaataga agaattagaa aatcatgaat gctttttaga tgagcgaaaa ggtgttcaaa
    32521 atgccatagc taggcgcaga aaagcgttag aaaaagaaca agctttaaaa gaaaagtatg
    32581 ttgaaatgac ttactttgaa aatgaaatat taaaagagca tcctaatgct attatttgtg
    32641 ggattgatga agttggaaga ggacctttag caggtccagt cgttgcatgc gcaacaattt
    32701 taaattcaaa tcacaattat ttgggccttg atgactcgaa aaaagtacct gttacgaaac
    32761 gtctagaatt aaatgaagca ctaaaaaatg aagttactgc ttttgcatat gggatcgcga
    32821 cagctgaaga aatagatgaa tttaatattt ataaagctac tcaaatcgcc atgcagcgag
    32881 ctattgatgg attatcagta caaccaacgc atttattgat agacgcgatg acgcttgata
    32941 atgcactgcc tcaagtatct ttaatcaagg gtgatgcaag aagtgtgtcc attgcagctg
    33001 caagtatcat ggcaaaggtt tttcgtgatg attatatgac acagttatct aaagattatc
    33061 ctgaatatgg ttttgaaaaa aacgcgggtt acggtaccaa acaacattta ctagcaatcg
    33121 atgatattgg cattatgaaa gagcatagaa aaagctttga acctataaaa tcgttactgt
    33181 aaatcgtaaa attcaattaa atgataaaaa agtagcattt aagtttacaa tagcgcttac
    33241 attttttata attgtaaggg aacttaacct aagtaacagg aggatggaag atgaatatcc
    33301 acgagtatca aggtaaagaa atatttcgtt caatgggcgt tgcagttcca gaaggacgag
    33361 tagcatttac tgctgaagaa gcggtggaga aagcaaaaga attaaattct gatgtttatg
    33421 ttgtaaaagc acaaattcat gctggaggta gaggtaaagc aggcggagta aaaattgcta
    33481 aatctttatc tgaggtagaa acatatgcaa aagaattatt agggaaaact ttggtgacac
    33541 atcaaactgg tccagaaggt aaagaaatta agcgtttata tatcgaagaa ggttgtgcta
    33601 ttcaaaaaga atattacgtt ggattcgtta ttgatcgtgc gactgaccaa gtaacattga
    33661 tggcgtctga agaagggggc actgagattg aagaagttgc tgcgaagact cctgaaaaga
    33721 tcttcaaaga aactatcgat ccagtaatcg gactttcacc attccaagca agacgaattg
    33781 cgtttaatat taatattcct aaagaatctg ttaacaaagc tgctaaattc ttattagcac
    33841 tttataatgt attcattgaa aaagattgtt caatcgtaga aatcaaccca ttagttacaa
    33901 cagctgatgg tgatgtattg gcattagatg ctaaaattaa ttttgatgat aatgcattat
    33961 tcagacataa agatgttgta gaattacgtg atttagaaga agaagatccg aaagagattg
    34021 aagcgtctaa acatgattta tcatacattg cattagatgg tgacatcgga tgtatggtta
    34081 atggtgcagg tttagccatg gcaacaatgg atacgattaa tcatttcggt ggaaacccag
    34141 ccaatttctt agatgcaggc ggaagcgcta ctagagaaaa agtaactgaa gcatttaaaa
    34201 tcattttagg tgatgaaaat gttaaaggta tttttgtaaa cattttcggt ggcattatga
    34261 aatgtgatgt tatcgcagaa ggtatcgttg aagctgtaaa agaagtagat ttaactttac
    34321 cactagttgt acgcctagaa ggtacaaatg ttgagttagg taaaaaaatc ttaaaagact
    34381 caggattagc aattgaacca gcagcaacaa tggctgaagg tgcacaaaaa attgttaaac
    34441 tagtcaaaga agcataagga aaggatggga gcactaagat gagtgtattt atagataaga
    34501 atactaaagt aatggtacaa ggtattacag ggtctactgc ccttttccat acaaaacaaa
    34561 tgcttgatta tggtacgaaa atagtagcag gtgtgacgcc tggtaaaggt ggtcaagttg
    34621 ttgaaggcgt tcctgttttc aacactgttg aagaagctaa aaatgaaact ggggcaacgg
    34681 tttcagtcat ttacgttcca gcaccatttg ctgcagactc aattttagaa gcagctgatg
    34741 cagacttaga tatggttatt tgtatcactg aacatattcc tgtattagac atggttaaag
    34801 ttaaacgcta cttacaaggt agaaaaacac gtttagttgg tccgaactgt ccaggtgtga
    34861 ttacagcaga tgaatgtaaa attggtatta tgcctggcta tattcacaaa aaaggtcatg
    34921 ttggtgtagt atctcgttca ggtacattaa catatgaagc agtgcaccaa ttgactgaag
    34981 aaggtattgg tcaaactaca gctgttggta ttggtggaga cccagtcaac ggaacaaact
    35041 ttattgatgt tttaaaagca ttcaatgaag atgacgaaac gaaagcagtt gttatgattg
    35101 gtgaaatcgg tggtacggct gaagaagaag cagctgaatg gattaaagcg aatatgacaa
    35161 aaccagttgt aggctttatc ggtggacaaa cagcacctcc tggaaaacgt atgggacatg
    35221 ctggtgcaat catttcaggt ggtaaaggta ctgctgaaga gaaaattaaa acattaaata
    35281 gttgtggtgt gaaaacagcg gcaacacctt cagaaattgg ttcaacatta attgaagctg
    35341 ctaaagaagc aggtatttat gaatcattat taactgttaa taaataaagt taaaagatga
    35401 tataaatggc tatagcccat tccatacttt ataaaagtat cggaaatggg ctatttgtcg
    35461 tgcgatgaat tttagtacac ttttcatatt ttggaaagac aagttaatta ttttacctcc
    35521 tacaatagct ttataaaaca aagaaaattt taattaaaat atatagcgca ctatgttata
    35581 atgtttgtat attattgtaa ggagtgtttc atcatgaata aacaacaaag taaagtacgc
    35641 tattcaatta gaaaagttag tattggaatt ttgtcaattt caataggtat gtttttggca
    35701 ttgggtatgt cgaacaaagc atatgcagat gaaattgata aatctaaaga ttttacaaga
    35761 gggtatgagc aaaatgtatt cgcgaaatca gagttaaatg ctaataaaaa tacgacaaaa
    35821 gacaaaataa aaaatgaagg tgctgttaaa acatcggaca caagtttaaa gttagacaac
    35881 aaatcagcaa tttcaaacgg aaatgaaatt aatcaagata taaagatttc aaatactccg
    35941 aaaaactc
//
LOCUS       DAMQWL010000014        35091 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.014, whole genome shotgun sequence.
ACCESSION   DAMQWL010000014 DAMQWL010000000
VERSION     DAMQWL010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 35091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35091
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.014"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            203..649
                     /locus_tag="PF788_000643"
     CDS             203..649
                     /locus_tag="PF788_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDG6302922.1"
                     /translation="MYVENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVL
                     MAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQG
                     KAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNFDYSDKK"
     gene            865..1293
                     /locus_tag="PF788_000644"
     CDS             865..1293
                     /locus_tag="PF788_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HDG6302923.1"
                     /translation="MILNFNQFENQNFFNANPSDTFKDLGKQVFNYFSTPSFVTNIYE
                     TDELYYLEAELAGVNKEDISIDFNNNTLTIQATRSAKYKSEQLILDERNFESLMRQFD
                     FEAVDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS"
     gene            complement(1400..2569)
                     /locus_tag="PF788_000645"
     CDS             complement(1400..2569)
                     /locus_tag="PF788_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NarK/NasA family nitrate transporter"
                     /protein_id="HDG6302924.1"
                     /translation="MYKTKGGFQLTLQTLSLVVGFMAWSIIAPLMPFIKQDVNVTEGQ
                     ISIILAIPVILGSVLRVPFGYLTNIVGAKWVFFTSFIVLLFPIFFLSQAQTPGMLMAS
                     GFFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIYGMGNIGTAVSSFLAPPIAGIIGWQ
                     TTVRSYLIIIALFALIMFIFGDTQERKIKVPLMAQMKTLSKNYKLYYLSYWYFITFGA
                     FVAFGIFLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDKFNAVKVLMIDF
                     VVMIIGAIILGISDHIALFTVGCLTISICAGIGNGLIFKLVPSYFLNEAGSANGIVSM
                     MGGLGGFFPPLVITYVANLTGSSHLAFIFLAVFGCIALFTMRHLYQKEYGSLKNG"
     gene            2939..3577
                     /locus_tag="PF788_000646"
     CDS             2939..3577
                     /locus_tag="PF788_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015581906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2268 domain-containing protein"
                     /protein_id="HDG6302925.1"
                     /translation="MYKINIIRSDSVYNNILKAPINDRDSIFTKEILVPFKKKFEVQH
                     MPIYNDDKQTMSAIQFLDAFQISPKDLRMSDQMSIQYLNNDFWSNCEKYLKVAIDQFS
                     NYSISSQVSNYHFTVLLGDRQKPLMYLNKNRGGDGGIPGYIMIYLVPSTSTINSMKSL
                     IAHEVNHNMRYQYIDWDGGSLIELIIAEGLAENYVESLYGKAHIGPWVTNTN"
     gene            3596..3853
                     /locus_tag="PF788_000647"
     CDS             3596..3853
                     /locus_tag="PF788_000647"
                     /inference="COORDINATES: protein motif:HMM:NF021537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302926.1"
                     /translation="MKNTIYNHLHLKHIFESMPYLYGDDINKLQGRPIVGLSHAAGYA
                     CGYHLVKYFLQKTNIPIEVATTLPAQKIINEVTEFWHTHTL"
     gene            3832..4572
                     /locus_tag="PF788_000648"
     CDS             3832..4572
                     /locus_tag="PF788_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDG6302927.1"
                     /translation="MAYTYTLKDIIEITGVTKRTLHYYDEIGLLVPDKNDKNYRVYKQ
                     QDLEKLQKILILKSFDFDIAKIKQYISYDNEQLRKLLSEQISKLDKKISDLQLIRRSV
                     CEFIKGLSLIDTSILNKTLQSQYDKEASIKYGHTKAYQSFIRRKDSLQSQDIRHKLTT
                     IFNKFNHMSLSHYPIQDCSDLVFEWKAFMNTIADFDDETLCCIAKTYEDDTRFKDYFN
                     SYDNQNLASYISEAVNYFLSNVNKSDNF"
     gene            complement(4830..5483)
                     /gene="nreC"
                     /locus_tag="PF788_000649"
     CDS             complement(4830..5483)
                     /gene="nreC"
                     /locus_tag="PF788_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002464689.1"
                     /note="Involved in the regulation of the the nitrate
                     reductase operon narGHJI; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate respiration regulation response
                     regulator NreC"
                     /protein_id="HDG6302928.1"
                     /translation="MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVME
                     YKPDVLLMDLSMPPGESGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYI
                     LKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKREL
                     EILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF"
     gene            complement(5506..6540)
                     /gene="nreB"
                     /locus_tag="PF788_000650"
     CDS             complement(5506..6540)
                     /gene="nreB"
                     /locus_tag="PF788_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501138.1"
                     /note="Involved in the regulation of the the nitrate
                     reductase operon narGHJI; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate respiration regulation sensor histidine
                     kinase NreB"
                     /protein_id="HDG6302929.1"
                     /translation="MINEDSIQLDTLLKKYYEHSIEKIVFADDNGKIIAMNDAAKDIL
                     SEEDNYSAVANAICHRCEGYTNAYDVQSCKDCFLESMQVQATNFQVFMKTKDQKVMPF
                     TATYQLIDQDRGIHAFTLQNVSSQIEQQEKLHQQRMMRKTISAQENERKRISRELHDS
                     VIQEMLNVDVQLRLLKYQEDTTKLLEDAENIEYIVAKLIDDIRNMSVELRPASLDDLG
                     LEAAFKSYFKQFEENYGIKIIYTSNIKNTRFDSDIETVVYRVVQEAILNALKYADVNE
                     INVGIRQTGRHLVAEVIDAGNGFDPSSKPKGSGLGLYGMNERAELVSGSVNIETKIGE
                     GTNVTLNIPI"
     gene            complement(6564..7016)
                     /gene="nreA"
                     /locus_tag="PF788_000651"
     CDS             complement(6564..7016)
                     /gene="nreA"
                     /locus_tag="PF788_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate respiration regulation accessory nitrate
                     sensor NreA"
                     /protein_id="HDG6302930.1"
                     /translation="MTPEAIIEDRRFQETLDKIRKEEGYDFAAIAFYESNKPSSPIKW
                     HYVSGNKNNRFKLIILRKGRGLAGTVMKTGKRMVIANVGLALGPEEKIDYPILLSESL
                     TAVLAVPLWYKNQVYGVLLFGQRDGRPLPKIFDNDDIQRKFGIFNDDK"
     gene            complement(7036..7713)
                     /gene="narI"
                     /locus_tag="PF788_000652"
     CDS             complement(7036..7713)
                     /gene="narI"
                     /locus_tag="PF788_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HDG6302931.1"
                     /translation="MLNQFLWVIFPYLCLVVFVAGHIARYRYDKFSWTAKSSELIERK
                     RLMWGSLLFHLGIIPVFFGHVVGLLIPKPWMDAVGVSEHLYHIGAVYIGSIFGIITLI
                     GMFLLTARRVTTKSIRRLSSASDIFVNFLLLLIVFMGCYATLVTNIQHPDFNYRTSLS
                     IWFRQLFMLKPDASLMSGVPIAFKMHILLGFTIMACWPFTRLVHVWSVPLTYINRRYI
                     IYRKNKV"
     gene            complement(7706..8281)
                     /gene="narJ"
                     /locus_tag="PF788_000653"
     CDS             complement(7706..8281)
                     /gene="narJ"
                     /locus_tag="PF788_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000606770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HDG6302932.1"
                     /translation="MINFDNFKKYQESFGYMAQQLCFPEKLTFHPKTFEETISKDHPA
                     YEDLVAFRNVMMTFSLSEIKAIYTDTFDFTKKAPLYMTYNKFDTQKERGQMLAKLKVL
                     YEMFGLEMVDNELSDYLPLMLQFLQVAEWRNDPRAEENIQLIIMIIEDGTYVMANALG
                     EDNNPYAYVIQALRKTLKLCLTSPKGVKHHA"
     gene            complement(8274..9833)
                     /gene="narH"
                     /locus_tag="PF788_000654"
     CDS             complement(8274..9833)
                     /gene="narH"
                     /locus_tag="PF788_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009384084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HDG6302933.1"
                     /translation="MKIKAQVAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNV
                     ETKPGVGYPKRWEDQEHYKGGWVLNRKGKLELKSGSRISKIALGKIFYNPDMPLIKDY
                     YEPWNYNYEHLTTAKSGKHSPVARAYSEITGDNIEIEWGPNWEDDLAGGHVTGPKDPN
                     IQKIEEDIKFQFDETFMMYLPRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACR
                     GWRYCMTGCPYKKVYFNWKTNKAEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYD
                     ADRVHEAASAVDEKDLYEKQLDIFLNPFDEEVIAQAEKDGIGYDWIEAAQNSPIYKLA
                     IEYKLAFPLHPEFRTMPMVWYCPPLSPIMSYFEGKNTTQNPDAIFPAIEEMRLPIEYL
                     ANIFTAGDTEPVKGALQRMAMMRSYMRSQVTQQPFDTSRLERLGITERQTKDMYRLLG
                     LAKYEDRFVIPTSHKETYLDTYHAQGSTGYNYGGEHFGDNCEGCGVAVGSGKTGQEIY
                     NENFYGGIFRD"
     gene            complement(9823..13512)
                     /locus_tag="PF788_000655"
     CDS             complement(9823..13512)
                     /locus_tag="PF788_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HDG6302934.1"
                     /translation="MGKFGLNFFKPTEKFNGNWSILESKSREWEKMYRERWSHDKEVR
                     TTHGVNCTGSCSWKVFVKNGVITWENQQTDYPSCGPDMPEYEPRGCPRGASFSWYEYS
                     PLRIKYPYIRGKLWDLWTEALEENNGNRVAAWASIVENEDKAKQYKQARGMGGHVRSN
                     WKDVTEIIAAQLLYTIKKYGPDRIAGFTPIPAMSMISYAAGARFINLLGGEMLSFYDW
                     YADLPPASPQIWGEQTDVPESSDWYNASYIIMWGSNVPLTRTPDAHFMTEVRYKGTKV
                     ISVAPDYAENVKFADNWLAPNPGSDAAIAQAMTHVILQEHYVNQPNERFINYAKQYTD
                     MPFLIMLDEDENGYKAGRFLRASDLGQTTEQGEWKPVIHDAISDSLVVPNGTMGQRWE
                     EGKKWNLKLETEDGSKINPTLSMTEGGYELETIQFPYFDSDGDGIFNRPIPTRQVTLA
                     NGDKVRIATIFDLMASQYGVRRFDHKLESKGYDDAESKYTPAWQEAISGVKQSVVIQV
                     AKEFAQNAIDTEGRSMIIMGAGINHWFNSDTIYRSILNLVMLCGCQGVNGGGWAHYVG
                     QEKCRPIEGWSTVAFAKDWQGPPRLQNGTSWFYFATDQWKYEESNVDRLKSPLAKTEE
                     LKHQHPADYNVLAARLGWLPSYPQFNKNSLLFAEEAKDEGIDSNEAILQRAIDEVKSK
                     QTQFAIEDPDLKKNHPKSLFIWRSNLISSSAKGQEYFMKHLLGTKSGLLATPNEDEKP
                     EEITWREETTGKLDLVVSLDFRMTATPLYSDIVLPAATWYEKHDLSSTDMHPYVHPFN
                     PAIDPLWESRSDWDIYKTLAKAFSEMAKDYLPGTFKDVVTTPLSHDTKQEISTPYGVV
                     KDWSKGEIEAVPGRTMPNFAIVERDYTKIYDKYVTLGPVLEKGKVGAHGVSFGVSEQY
                     EELKSMLGTWSDTNDDSVRANRPRIDTARNVADAILSISSATNGKLSQKSYEDLEEQT
                     GMPLKDISSERAAEKISFLNITSQPREVIPTAVFPGSNKQGRRYSPFTTNIERLVPFR
                     TLTGRQSYYVDHEVFQQFGESLPVYKPTLPPMVFGNRDKKIKGGTDALVLRYLTPHGK
                     WNIHSMYQDNKHMLTLFRGGPTVWISNEDAEKHDIQDNDWLEVYNRNGVVTARAVISH
                     RMPKGTMFMYHAQDKHIQTPGSEITDTRGGSHNAPTRIHLKPTQLVGGYAQISYHFNY
                     YGPIGNQRDLYVAVRKMKEVNWLED"
     gene            complement(13821..14798)
                     /gene="cobA"
                     /locus_tag="PF788_000656"
     CDS             complement(13821..14798)
                     /gene="cobA"
                     /locus_tag="PF788_000656"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDG6302935.1"
                     /translation="MSVEEYGKVYLIGAGPGNPNYLTKKAERLIREADVILYDRLVNP
                     LILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKVVRLKGGDPAIFGRVQ
                     EEVDTLNEHHIAFEIVPGVTSASAAVATMQTGLTMRTVAKSVTFSTGHFKDSEENEVD
                     VNSLVNGGTLAIYMGVKRLGKIITQIQQYTDIDYPIAIVFQASCFNEFVVKGRLSNII
                     SKLQHYSIEAKPGICIIGEVVDYTENTPKSYDPMKQFYVVSGSKHDALMLCEHLYDEG
                     YGCLLNPNDTSNGTYHSSQYDYYDAFIKQQENVTYISTDRADANTVLCH"
     gene            complement(14789..15103)
                     /gene="nirD"
                     /locus_tag="PF788_000657"
     CDS             complement(14789..15103)
                     /gene="nirD"
                     /locus_tag="PF788_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HDG6302936.1"
                     /translation="METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIH
                     NICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGIVQEPDEGCVDVYEVEVTDGNVYI
                     CL"
     gene            complement(15107..17512)
                     /locus_tag="PF788_000658"
     CDS             complement(15107..17512)
                     /locus_tag="PF788_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDG6302937.1"
                     /translation="MAKQKLVMIGNGMAGIRTIEEILERANDLYDITVIGKEPYPNYN
                     RIMLSNILQNKMTVEETIMNPYEWYEEHGIELITNDPVIEVDRANQSVTTANGIEVSY
                     DKLIFATGSKAFVIPVPGSTLPSVIGWRTLDDTEQMMNIAKTKKKAIVIGGGLLGLEC
                     ARGLLDQGMEVTVLHLAEWLMEMQLDRKAGNMLKADLEKQGMKFEMQANTTEILGEDD
                     VEGVKLADGREIPADLVVMAVGIRPYTEVAKESGLDVNRGIVVNDVMQTSDSNVYAVG
                     ECAEHNGKVYGLVAPLYEQGKVLADHLTNKETNGYKGSTTFTSLKVSGCDLYSAGQIV
                     ENAEIKGIEIFNSVDNNYKKIFLKDGNVVGAVLYGDIDDGSRFYNMMKKGESTEDYTL
                     VSLLTKGGEEASLSIADMADDETICGCNGVDKGTIVNAITENGFTTVEEVTAKTKAGN
                     SCGKCKPQIAQILQHTLGDDFVAAKPAGICGCTDLTRDQIVTQIRAKGLKTSKEVRHV
                     LNFKNKGGCPKCRPAINYYLNMVYPHDHEDERESRFANERYHANIQNDGTFSVIPQMR
                     GGVTDADQLIRLGEVAKKYHVPLVKVTGSQRVGLYGVKKEELPNIWEDLGMRSASAYG
                     KKTRSVKSCVGKEFCRFGTQYTTRLGIRLEKTFEYIDTPHKFKMGVSGCPRSCVESGV
                     KDFGIISVENGFQIYIGGNGGTEVEKAEFLTTVETEDEVIKLCGALMQYYRETGIYAE
                     RTAPWLRRLGFENVKEVLLDPERQNELFERIMDAKKAVEAEPWEAITSNAQARRIFEV
                     EKV"
     gene            complement(17578..18309)
                     /locus_tag="PF788_000659"
     CDS             complement(17578..18309)
                     /locus_tag="PF788_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sirohydrochlorin chelatase"
                     /protein_id="HDG6302938.1"
                     /translation="MNGNIIVAHGMRHGRQNQALEAFISELVKDDIHHYDIAFLESEH
                     QDLETVMTTLIQSGVDHFKIVPLLIFSAMHYLKDIPNIVHEMKRRYPDIKVEVSEPLG
                     THPLMRRLIEQRICDALAGDEQQVGVMVVAHGNINGKFTKAHEELQICAQNLQISKPT
                     YARTLYGEISFTHDLESISKRYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIHFTP
                     SINFDPILKQIINDRLESLMIPMKI"
     gene            complement(18539..19075)
                     /locus_tag="PF788_000660"
     CDS             complement(18539..19075)
                     /locus_tag="PF788_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6302939.1"
                     /translation="MTKTMIRLASEQDAEKLQQLMHEAFTPLRELGIDWPSVNANLDA
                     VKENIDKNTTFVMTIDDEIISTITVRYPWGSVKSISGYPFVWWFATNPEYEGKGYGSQ
                     LLTYVEEAFLRDTLKSAAVTLGTSARLHPWLLKIYEKRGYEIYSEHENDDGDLGVIMR
                     KVLIPERFDETILGQPPF"
     gene            complement(19308..20132)
                     /locus_tag="PF788_000661"
     CDS             complement(19308..20132)
                     /locus_tag="PF788_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HDG6302940.1"
                     /translation="MIENKKTVEDTYSTGAIVDSISSSVQMKQVMVQQTPGRYMLKAM
                     MAGFLLSIVTVFMFGIKTQFASTHVDGLINLMGAIAFSLGLILVVLTNSELLTSNFMY
                     FTVGWYYKVVSVKKMTWILLYCFLGNILGGFVLFFLMKFAHVMTPEMTQALTALVQKK
                     TVDSTWLNIFTKGIFCNFFINIGIFISMQFKGGLTKAFFIACGVVVFVYMGYEHVVFN
                     AGLYAGMVFFNLDAVSWLHVLKNIVFAFLGNFVGGGIFVGLVYAFLNGKRNRLEQQ"
     gene            complement(20349..20531)
                     /locus_tag="PF788_000662"
     CDS             complement(20349..20531)
                     /locus_tag="PF788_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302941.1"
                     /translation="MVERYIKVLILYIFTTLLSSISVTSKCVPNKVIRFILRTAIGYS
                     VFAYGLHYFSNLKKNK"
     gene            complement(20615..21082)
                     /locus_tag="PF788_000663"
     CDS             complement(20615..21082)
                     /locus_tag="PF788_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HDG6302942.1"
                     /translation="MTIKVEDNKIIFSRTIEAPIEKVFDAYTTKALFEKWFHPKDAST
                     KVFRFNAVSGGDAFYAIKTPTMTSYTLAEYKTVKRPYLIEYIDSFATPQGAKDTKMPS
                     MKITLSFSKSNTTKTTVTSTSVFPTKEAAQQVINMGVEQGMNQTLDQLDALLK"
     gene            complement(21268..22818)
                     /gene="adcA"
                     /locus_tag="PF788_000664"
     CDS             complement(21268..22818)
                     /gene="adcA"
                     /locus_tag="PF788_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding
                     lipoprotein AdcA"
                     /protein_id="HDG6302943.1"
                     /translation="MKKKLGMLLLVPAVTLSLAACGNDDGKDKDGKVTIKTTVYPLQS
                     FAEQIGGKHVKVSSIYPAGTDLHSYEPTQKDILSASKSDLFMYTGDNLDPVAKKVAST
                     IKDKDKKLSLEDKLDKAKLLTDQHEHGEEHEHEGHDHEKEEHHHHHGGYDPHVWLDPK
                     INQTFAKEIKDELVKKDPKHKDDYEKNYKKLNDDLKKIDNDMKQVTKDKQGNAVFISH
                     ESIGYLADCYGFVQKGIQNMNAEDPSQKELTKIVKEIRDSNAKYILYEDNVANKVTET
                     IRKETDAKPLKFYNMESLNKEQQKKDNITYQSLMKSNIENIGKALDSGVKVKDDKAES
                     KHDKAISDGYFKDEQVKDRELSDYAGEWQSVYPYLKDGTLDEVMEHKAENDPKKSAKD
                     LKAYYDKGYKTDITNIDIKGNEITFTKDGKKHTGKYEYNGKKTLKYPKGNRGVRFMFK
                     LVDGNDKDLPKFIQFSDHNIAPKKAEHFHIFMGNDNDALLKEMDNWPTYYPSKLNKDQ
                     IKEEMLAH"
     gene            complement(23007..23078)
                     /locus_tag="PF788_000665"
                     /pseudo
     CDS             complement(23007..23078)
                     /locus_tag="PF788_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501155.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(23113..23379)
                     /locus_tag="PF788_000666"
     CDS             complement(23113..23379)
                     /locus_tag="PF788_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="HDG6302944.1"
                     /translation="MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALE
                     GIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIKIASCKYHY"
     gene            complement(23379..23630)
                     /locus_tag="PF788_000667"
     CDS             complement(23379..23630)
                     /locus_tag="PF788_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HDG6302945.1"
                     /translation="MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESD
                     YNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKDIDV"
     gene            complement(23795..23896)
                     /locus_tag="PF788_000668"
     CDS             complement(23795..23896)
                     /locus_tag="PF788_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302946.1"
                     /translation="MLRSVSDTNLLGQYEKAISISDMIEIVFLMYEV"
     gene            complement(23903..24502)
                     /locus_tag="PF788_000669"
     CDS             complement(23903..24502)
                     /locus_tag="PF788_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDG6302947.1"
                     /translation="MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVVYGDYKC
                     PYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLD
                     FQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDK
                     KIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK"
     gene            complement(24521..24880)
                     /locus_tag="PF788_000670"
     CDS             complement(24521..24880)
                     /locus_tag="PF788_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000819849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4467 domain-containing protein"
                     /protein_id="HDG6302948.1"
                     /translation="MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKK
                     GNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDEVHYYAYDFSDKRVSYKQDFDSR
                     RYYQQHDADYHEENMTN"
     gene            25135..26385
                     /gene="fmhA"
                     /locus_tag="PF788_000671"
     CDS             25135..26385
                     /gene="fmhA"
                     /locus_tag="PF788_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FemA/FemB family glycyltransferase FmhA"
                     /protein_id="HDG6302949.1"
                     /translation="MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGV
                     KDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKHNCL
                     YVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDKLGYKHQGFPVGYDSMSQIRWLSVL
                     DLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKF
                     RELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSK
                     KNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPK
                     YNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESSEDYGVQQFKKGFNAHVEEY
                     IGDFIKPIKPLLYKVQTYLNHKRR"
     gene            complement(26482..27213)
                     /locus_tag="PF788_000672"
     CDS             complement(26482..27213)
                     /locus_tag="PF788_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDG6302950.1"
                     /translation="MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLL
                     RMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEG
                     LITVKKLKKDEARGKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVML
                     FDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQ
                     GAPEEMFNRPKTEELRRFLNVINEE"
     gene            complement(27210..27929)
                     /locus_tag="PF788_000673"
     CDS             complement(27210..27929)
                     /locus_tag="PF788_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDG6302951.1"
                     /translation="MFLNLNSEQQHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLI
                     IALFTALMRISTSKILRSISRVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQW
                     TLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYGQTIQRIILPQA
                     IRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVV
                     CFIISIIQGIYESYIERGYRS"
     gene            complement(27910..28689)
                     /locus_tag="PF788_000674"
     CDS             complement(27910..28689)
                     /locus_tag="PF788_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDG6302952.1"
                     /translation="MKRLLFVMIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYA
                     PFSFHDKDGKLTGYDIDVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGI
                     NPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGA
                     DITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAF
                     SKKADDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSKSK"
     gene            complement(28810..30249)
                     /gene="mdeA"
                     /locus_tag="PF788_000675"
     CDS             complement(28810..30249)
                     /gene="mdeA"
                     /locus_tag="PF788_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdeA"
                     /protein_id="HDG6302953.1"
                     /translation="MSKKQKLTMIITMLMGGFFGLLNETLLVTALPSIMKDFEISYTQ
                     VQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGISIFFLGTLLGGLSPHFATLLVA
                     RIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYFN
                     WRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISE
                     KGFDNPIVLVSMIGGVVLVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSM
                     IGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRNLALVGMA
                     IVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSM
                     TNTVQQIAGSIGTAALITILSHASKNFSPTMSDYNGMNKIDMMNQIKVDTMLHGYHAG
                     FLFALLITVVSFFCSFMLQGKKKEVDSRQ"
     gene            30423..30527
                     /locus_tag="PF788_000676"
     CDS             30423..30527
                     /locus_tag="PF788_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal homeostasis protein"
                     /protein_id="HDG6302954.1"
                     /translation="MKLDLQTARRNLNSPNIKTRKRALKIIKQHKRAK"
     gene            complement(30681..31367)
                     /locus_tag="PF788_000677"
     CDS             complement(30681..31367)
                     /locus_tag="PF788_000677"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDG6302955.1"
                     /translation="MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVR
                     ENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDAR
                     KEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVI
                     PFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTD
                     DLEVIDKYYL"
     gene            complement(31694..32560)
                     /locus_tag="PF788_000678"
     CDS             complement(31694..32560)
                     /locus_tag="PF788_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDG6302956.1"
                     /translation="MSHNENLKLAQRGAYLSLIVYIILSIVKYVTGFVFNSAAVRADA
                     LNNMTDIIVSLAVIIGLKISIKPADRNHPYGHLKSENISSLLVSFVIMFVGIQVVIQN
                     APRLFKEDDVVPNAITIIVSLISGLVMLIVFAVNQRLAKRTKSSSLNSAAKDNLSDSL
                     VSIGTAIGLIFTQIGFPIVDIILATLLGLLIVYTGFGIFKEAIFMLSDGFNETELEAY
                     RNDILEVDEVQEVKSIKGRYHGSSVFIDVTIVVDANLSLVEAHQICDNVEHHLHKKGI
                     SSVYVHPEPDHL"
     gene            complement(33113..33217)
                     /locus_tag="PF788_000679"
     CDS             complement(33113..33217)
                     /locus_tag="PF788_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302957.1"
                     /translation="MLTNRLTSVNYVKKRLIQNIQRILSKEVLYGEMQ"
     gene            33312..34622
                     /gene="sbi"
                     /locus_tag="PF788_000680"
     CDS             33312..34622
                     /gene="sbi"
                     /locus_tag="PF788_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunoglobulin-binding protein Sbi"
                     /protein_id="HDG6302958.1"
                     /translation="MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQ
                     NNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVA
                     QQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKA
                     IKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAI
                     SKLNEKDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQKDAEKKVAPKVEAPQIQS
                     PQIEKPKVESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEK
                     YDTAKYYYNTYYKYKGAIDQTVLTVLGSGSKSYIQPLKVDDKNGYLAKSYAQVRNYVT
                     ESINTGKVLYTFYQNPTLVKTAIKAQETASSIKNTLSNLLSFWK"
BASE COUNT        11366 a         6717 c         4944 g        12064 t
ORIGIN      
        1 ttaaggatga tacaattaca tttttttcaa tttaaaaaat cagtcatatc agtaattacc
       61 gatgaaaata ctaagatatc gatatatttt gcattattta acatttaaat tcaattatag
      121 acaattcaat aattgcgatg aaatcagtac ttgacaacta ttacacttca taatattgtt
      181 tattttaaca aggagtgatt ggatgtatgt agaaaacagc tatcttagca aacagttgtg
      241 ttttttattt tatgtttctt caaaagaaat aattaaaaaa tacacaaact atcttaagga
      301 atatgattta acctatactg gttacattgt tttaatggcg attgaaaatg atgaaaaact
      361 taacatcaaa aaattaggtg aacgtgtgtt cttagattct ggaacactga caccattact
      421 aaagaaatta gaaaagaaag attacgttgt tcgaacacgt gaagagaaag atgaaagaaa
      481 cctacaaatt tctctaacag aacaaggtaa agcaataaaa agccctcttg ctgaaatttc
      541 tgttaaggtc tttaatgaat tcaacatttc agaacgagaa gcatcagata taattaataa
      601 tttgcggaat tttgtttcta aaaattttga ctattccgac aaaaaataac tccctatcat
      661 aaggtgatgg gcagaagtat gcatcgatat gtttattcat tatctttatt gcttgtataa
      721 atctcgatgc tcagttcttt tgccctgatt ccttatcagg cacaaatcta cccatttatt
      781 acttttttat ctcccctttt actttaactt ttttaatact actcatataa tggctttgta
      841 atacaaattt ctataatgga agtgatgata ttgaacttca atcaattcga gaatcaaaac
      901 ttttttaacg ctaatccaag tgatacattt aaagatttag gtaaacaagt atttaattac
      961 ttttcaacac cttcatttgt aacgaatata tatgaaacag acgaattata ttacttagaa
     1021 gctgaactag caggtgtaaa taaagaagat attagtatcg atttcaataa taatacgctc
     1081 actattcaag ctactagaag cgcaaaatac aaatctgaac aactcatttt agatgagcgt
     1141 aacttcgaat cattaatgcg tcaatttgat tttgaagctg ttgataagca acatattact
     1201 gctagttttg aaaatgggtt attaaccatt accttgccta aaatcaaacc aagcaatgaa
     1261 actacttcat caacatctat tccaatttca tagttaaatt taaaatgaat acactactaa
     1321 agccttaatg tcatgctacg aatattgcgc atgatattaa ggctttgtat ttaactaaat
     1381 gaatggcatg tattacatat caaccgtttt tcaatgagcc atattctttt tggtataaat
     1441 gacgcatggt aaataatgca atacatccaa ataccgctaa gaaaataaat gctaaatgac
     1501 ttgatcctgt taaattagct acgtacgtga ttactagtgg tgggaagaat cctcctaaac
     1561 cacccatcat tgatacgata ccatttgcgg atcccgcttc atttaagaag tatgatggta
     1621 ctaatttgaa gattaagccg ttaccaatac ctgcacaaat acttattgtt aaacagccta
     1681 cagtgaataa tgcgatatgg tctgaaatac ctaaaataat ggcaccgata atcataacaa
     1741 caaaatcaat catcaatact ttaactgcat taaatttatc acctaaaatg ccacctattg
     1801 gtcttaagaa tgttgccagc gcaatgaata cacctgatcg aataccagca tctactttgt
     1861 caattccaaa atgatttact aagtagttag gtaagaaaat accaaatgct acaaaagcac
     1921 caaaagtaat aaaataccaa taacttaagt aatataattt gtagttttta gataatgttt
     1981 tcatttgagc cattaatggt actttaattt tacgttcttg tgtgtcacca aaaatgaaca
     2041 taattaatgc aaataaagcg ataataatta agtaacttct aactgttgtt tgccaaccaa
     2101 taatacccgc tatcggtggt gctaaaaatg aagaaactgc tgtaccgata tttcccatac
     2161 cataaatacc atttgctaga cctacttttt ctttagggaa atatttagga actgatgtaa
     2221 caccaactga gaaaattgca ccacctacac caaggaaaaa tcctgaagcc attaacatac
     2281 ccggtgtttg tgcttggctt aagaaaaata tcgggaataa caatacgata aaactagtaa
     2341 agaataccca tttagcgcca acaatgtttg ttaaataacc aaatggcaca cggagcaccg
     2401 atcccaaaat aactggtatc gctaaaatga ttgatatttg accttcagta acattgacat
     2461 cttgtttaat aaagggcatt aatggcgcaa ttatactcca agccataaac ccaaccacta
     2521 aacttaatgt ttgtaatgta agttgaaagc caccttttgt tttgtacata cgtttcacct
     2581 tcatcaaaat catttatttt ttaatagata tcaatactct gcctatatat tagaggtcaa
     2641 tgttatttaa aaatgctttc atttatatga aaacattcaa tatagacaaa gtattgacta
     2701 catatatatt ttattatgat tgtgaaaaag tgaacataag gattttccct tatttatgaa
     2761 gtgatttacc ctatacaatg tccctttaag atgcttttag acacttattc gccatcattt
     2821 taatcatatt atttaggaac actcacatac ttttcttaat ttttttcaat tagttacaat
     2881 tactgcttga aaatcacgtt acgttatcct ttatgctgac aacataagga ggtttatcat
     2941 gtataaaatc aatattatta gatcagattc cgtctataat aatatactca aggcaccaat
     3001 aaacgaccgt gattcaattt tcactaaaga aatattagta ccttttaaaa agaaatttga
     3061 ggtacaacat atgcctattt ataatgatga caaacagaca atgagtgcga ttcaattttt
     3121 agatgccttt caaatttctc ccaaagattt acgcatgtct gaccaaatgt caatacaata
     3181 cctgaataat gatttctgga gtaattgcga aaaatattta aaagttgcta tagatcaatt
     3241 ttcaaattat agtatctcat ctcaagtttc taactatcat ttcacagtat tacttggaga
     3301 tcgccaaaaa ccacttatgt atctaaataa aaatcgcggt ggtgatggtg gcataccagg
     3361 ttatattatg atttatttag tgccgagtac aagtacaatt aattctatga aaagcttaat
     3421 tgcacatgaa gtaaatcata atatgcgcta tcaatatatt gattgggatg gcggaagttt
     3481 gattgaattg attattgcag aaggattagc tgaaaactat gtagaatcat tgtatggtaa
     3541 agcgcatatt ggaccgtggg taacaaatac taattgaagt cgtgataacg taaaaattaa
     3601 aaatactatt tataatcatt tacatttaaa gcatatattt gaatcgatgc cttatctcta
     3661 tggtgatgat attaataaac ttcaaggtag gcctatcgtt ggcttatctc atgctgccgg
     3721 gtatgcatgt ggctatcact tggtaaaata ctttttacaa aaaacaaaca tacctattga
     3781 agttgctaca acacttccag cacaaaaaat aataaatgag gtgactgaat tttggcatac
     3841 acatacactt taaaagatat tattgaaatt acaggtgtaa ctaaaagaac tttacattat
     3901 tacgatgaaa taggattatt agttccagat aaaaatgata aaaattatcg cgtttataaa
     3961 cagcaagact tagaaaaatt acaaaagatt ttaatactca agtcttttga ttttgatatc
     4021 gctaaaataa aacaatacat ttcgtatgat aatgaacaat tgcgaaagtt attatcagag
     4081 caaataagca agttagataa aaagatttct gacttacaat taattagacg ctctgtatgt
     4141 gaatttatta aaggactctc tctaatagat accagcattt taaacaagac actacagtca
     4201 caatatgata aagaagcatc tataaaatat ggtcatacga aagcatatca atcatttatt
     4261 agacgtaaag acagcttaca atcgcaggat atcagacata aattgacaac tatcttcaat
     4321 aaatttaatc atatgtcttt gagtcattat ccaatccaag attgtagtga tctcgtattt
     4381 gagtggaagg catttatgaa cactatcgct gattttgatg atgaaacatt atgctgtatt
     4441 gctaaaacat atgaagatga tacgcgtttc aaagattact ttaattcata tgataatcaa
     4501 aatttagcat catacatttc agaagctgtt aattattttt tgagcaatgt gaataagagc
     4561 gacaattttt aatcctcata cagatgctac aacactgaat acaccaacta aaataattgt
     4621 tcaaagtaga aaactaatca tttattctct aaatcaataa ctatattaaa agttatacct
     4681 ttgcaaagcg aattagtata ggttaccgaa aggagaaagg attaggttcc attcgattta
     4741 taaaaaaata tatttcgaaa catacaaaag cgccagaaga taatcatttc ctctcgcgct
     4801 tttatactga attatattaa tttcaaactc taaaactcta ataatttctt tttcaatgca
     4861 tattcaacta gctcaggttt actctttaag ccaagctttg tcataatatg cgtcttatgt
     4921 gcttctactg ttttcacaga tacaaataat ttctctgcaa tttctttatt cccgtaacct
     4981 ttggcaataa gtggcaatat ttctagttct cgttttgata agattttaaa aggatctgtt
     5041 gtgtttgcag tgtcctgatt tgaattagat acaaattcat tcactaaaga tgttgtaagt
     5101 ttcatatcta catatgtttc acctttatat acagttcgaa tagctaacaa taattgttca
     5161 tcaggtgcat ttttcaatat gtaacctttc gcaccattac gcaacacatg gaacaaatac
     5221 tcctcatcat caaacattgt taatattagt attttagttt caggaaaact gtcagcaatt
     5281 ttactcgtag cgataagacc tgactcacct ggtggcatac ttaaatccat tagtaacaca
     5341 tcaggtttat attccattac tttttggtaa gcttcgacgc catctgcagc cgttgcaaca
     5401 acttccatat cattttgata atttaaaatc atagagaacc ccgtacggac aacagcgtga
     5461 tcatcggcaa tgactatttt caattttatt cccccaatgt atgtttcaaa ttggaatgtt
     5521 caatgtaaca ttggtaccct caccaatttt cgtttcaata ttgacgctac cgctgactaa
     5581 ctcagctcgc tcattcattc catataaacc gagtccagaa cctttaggct tagaacttgg
     5641 atcaaaacca tttcccgcat ctatcacttc tgctaccaaa tggcgcccag tttgacggat
     5701 acctacattt atttcattta catcagcgta tttcaacgca tttaaaatag cttcttgcac
     5761 tactcgataa acaaccgttt caatatcact atcaaagcga gtatttttaa tatttgatgt
     5821 atatatgatt tttattccat aattttcttc aaactgttta aaatatgatt taaaagctgc
     5881 ttcaaggcct agatcatcca aagaagcggg tcttaattca accgacatat tacgtatatc
     5941 atcaattaat ttagcgacaa tatattcaat attttctgcg tcttccaaaa gcttagttgt
     6001 atcttcttga tattttaata atctcaattg aacatctaca ttgagcattt cttgaatcac
     6061 actatcatgt aactctctag aaattcgctt tctttcattt tcttgggctg agattgtttt
     6121 acgcatcata cgttgttgat gcaatttctc ttgctgttca atttgtgatg aaacattttg
     6181 aagcgtaaat gcatgaattc ccctgtcttg atcaatcaac tgatatgttg ctgtaaatgg
     6241 catcactttt tgatctttcg tcttcataaa tacttggaaa ttcgtagctt gtacttgcat
     6301 cgattctaag aaacagtctt tacatgattg tacatcatag gcatttgtat acccttcaca
     6361 tctgtgacaa atcgcattcg ccacagcact gtaattatct tcttcagata atatatcttt
     6421 agcagcatca ttcattgcaa taattttacc gttatcatca gcaaaaacta tcttttcgat
     6481 tgaatgctca taatattttt tcaataaagt atctaactgt atactgtcct cattaatcat
     6541 gacttacacc ctaattcatc tcattattta tcatcattga aaataccaaa cttacgttga
     6601 atatcatcat tatcaaatat ttttggtaaa ggacgaccat ctctttgacc aaataatagt
     6661 acgccataca cttgattctt ataccaaagc ggcactgcta aaactgctgt taatgattcg
     6721 ctcaataaaa ttggatagtc aatcttttct tcaggcccta aagctaaacc aacattggct
     6781 attaccatac gctttcctgt tttcataaca gttccagcta atccacgacc ttttcttaaa
     6841 ataatcaatt taaatcgatt atttttatta cctgaaacat agtgccattt tattggagat
     6901 gatggtttgt tagattcata gaaagcgatt gccgcaaaat cataaccctc ttctttgcgt
     6961 attttatcta atgtctcttg aaatctacga tcttcaatta ttgcttctgg tgtcaaatcc
     7021 tttcacctct tatgcttaca ctttattctt acggtaaata atatatctgc gatttatata
     7081 tgtcaaaggt acactccaaa catgcaccaa acgtgtaaat ggccaacaag ccataatagt
     7141 gaaacctaac aatatatgca ttttaaatgc aatcggcaca ccactcatca atgacgcatc
     7201 tggttttaac ataaataatt gtctaaacca aattgataat gaagttctgt agttaaagtc
     7261 tggatgttgt atatttgtta ctaatgttgc gtaacatccc ataaatacga taagtaataa
     7321 taagaaattt acaaatatat ccgacgctga acttaatctt cgaatacttt tcgtagtaac
     7381 acgtctcgct gttaataaaa acatccctat caaagttatt ataccaaaga tgctaccaat
     7441 ataaacagcg cctatatgat ataaatgctc agacacaccc actgcatcca tccatggttt
     7501 cggtattaac aatccaacta cgtgtccaaa aaacactgga ataataccta agtgaaataa
     7561 taaacttccc cacatcaacc tttttctttc tattaattca ctagatttag ctgtccaaga
     7621 aaatttatca taacgataac gtgcaatatg acctgcgaca aagacaacta aacataaata
     7681 cggaaatata acccataaaa actgattaag catgatgttt cactcctttt ggtgatgtca
     7741 aacataattt caatgttttt ctaagtgctt gaatcacata ggcatatgga ttgttatctt
     7801 caccaagtgc attcgccatc acatatgttc catcctcaat aatcataatg attaattgaa
     7861 tattctcttc agctcttgga tcatttcgcc attctgccac ttgcaaaaat tgaagcatca
     7921 acggtagata atcagaaagt tcattatcta ccatttctag tccaaacatt tcatataata
     7981 cctttaattt agctaacatt tgcccacgtt ctttttgcgt atcaaatttg ttatacgtca
     8041 tatataatgg tgcttttttc gtaaaatcaa atgtatctgt ataaatcgct ttgatttctg
     8101 ataatgaaaa tgtcatcatt acatttctaa atgctactaa atcttcatat gctggatgat
     8161 ctttcgaaat tgtttcttca aaagtttttg gatgaaaagt taatttttct ggaaaacata
     8221 actgttgtgc catatatcca aaactttctt gatatttttt aaaattatcg aaattaatca
     8281 cggaaaatcc ctccatagaa attctcatta taaatttctt gaccagtttt ccctgaacct
     8341 actgcaacgc cacagccttc acagttatct ccaaaatgct cgccgccgta attgtatcct
     8401 gtactacctt gtgcgtgata cgtatctaaa taggtttctt tgtgtgatgt tggaataaca
     8461 aatcgatctt catatttggc tagtcctaat aaacgataca tgtctttagt ttggcgctcg
     8521 gttataccta atcgctctaa tcgagacgtg tcaaatggct gttgagtaac ttgagatctc
     8581 atataacttc tcatcattgc catacgttgt agggctcctt ttactggctc tgtatctcct
     8641 gcagtgaaaa tattagctaa gtattcaata ggtaaacgca tttcttcaat ggctgggaaa
     8701 atcgcatctg gattttgagt tgtattttta ccttcaaaat agctcataat tgggctaagt
     8761 ggtgggcaat accaaaccat cggcatcgtt ctaaattcag gatgtaacgg aaatgcaagt
     8821 ttatattcaa ttgctaactt ataaattgga gagttttgtg cagcttcaat ccaatcgtaa
     8881 ccaataccat ctttttcagc ttgagcaatg acttcttcgt caaatgggtt taagaatata
     8941 tctaattgtt tttcatataa atctttctcg tctactgctg aagctgcttc atgaactcga
     9001 tctgcatcat ataataaaac acctaagtaa cgcatacgtc ctgtacaagt ttcagagcat
     9061 accgtaggca tacccgcctc gattctcggg aaacagaaag tacacttttc agctttgttc
     9121 gttttccaat tgaagtaaac tttcttatat ggacaacctg tcatacagta acgccatcca
     9181 cgacatgcgt cttggtcaac taatacaatg ccatcttcat cacgtttata catagcacct
     9241 gaaggacacg atgcaacgca acttggattc aagcaatgtt cacataaacg tggtaaatac
     9301 atcataaaag tttcgtcaaa ttggaattta atatcttctt ctattttttg gatgttagga
     9361 tcttttggac ctgtaacatg accacctgct aagtcatctt cccagttagg tccccattca
     9421 atttcaatgt tatcccccgt aatttctgaa tacgctctag caactggcga atgcttccct
     9481 gatttcgcag ttgttaaatg ttcataatta tagttccatg gctcataata atctttaatt
     9541 aatggcatat ctgggttata aaaaatttta cctaaagcaa tttttgaaat tctacttcca
     9601 gattttaatt caagtttccc tttacgattt agtacccaac cacctttgta gtgttcttgg
     9661 tcttcccaac gtttcggata ccctacacct ggcttcgttt ctacgttgtt gaaccacatg
     9721 tactcagcac ctggacgatt tgtccaagtg tttttacatg tcacactaca cgtatggcat
     9781 cctatgcatt tatctaaatt taataccatc gcaacttgcg ctttaatctt caagccaatt
     9841 aacctccttc atctttctaa ctgctacata taaatccctt tggttcccaa ttggtccata
     9901 ataattaaag tgataactaa tttgtgcgta tcctccgact agttgtgttg gtttcaaatg
     9961 gattctagtc ggcgcgttgt gtgaaccacc acgtgtatct gtaatttctg acccaggcgt
    10021 ttgaatatgt ttatcttgtg catgatacat aaacattgta cctttaggca tacgatgcga
    10081 aataactgct cttgccgtta caacaccatt acggttatac acttctagcc aatcattatc
    10141 ttggatatcg tgtttttcag catcttcatt tgatatccaa accgttggac cacctctaaa
    10201 tagtgtcaac atatgcttat tatcttgata cattgagtgt atattccatt ttccatgagg
    10261 cgttaaataa cgcagtacca aagcatctgt accaccttta attttcttat ctctattccc
    10321 aaataccatt ggcggcaatg tcggtttata tactggtaag ctctccccaa attgttggaa
    10381 aacttcgtga tccacataat aactttgacg tcctgttaat gttctaaaag gtactagacg
    10441 ttctatattc gttgtaaatg gtgaatatcg tcgaccttgt ttatttgaac ctgggaatac
    10501 tgctgtcggt attacttctc gtggttgtga agttatattt aaaaacgaaa ttttctcagc
    10561 agcgcgttcg ctagaaatat cttttaacgg cattccagtt tgttcttcga gatcttcata
    10621 tgatttttgt gataatttac cattcgtagc agatgaaata cttagtattg catcagctac
    10681 attacgtgct gtatcaatac gtggacgatt cgctctcaca gaatcatcat ttgtatcact
    10741 ccacgtacct aacatacttt ttaattcttc atattgttca ctgacaccga aacttacacc
    10801 atgtgctcca actttccctt tttcaagtac aggaccaagc gtgacatatt tgtcgtaaat
    10861 tttagtgtag tcgcgttcta caattgcaaa gttaggcatt gtacgtccag gtaccgcttc
    10921 aatttcaccc ttcgaccaat ctttcactac gccgtatggt gttgaaattt cttgctttgt
    10981 atcatgacta agtggagttg tcacaacatc tttaaacgtt ccaggtaaat agtcttttgc
    11041 catttctgaa aatgcttttg ccaacgtttt ataaatatcc cagtctgaac gcgattccca
    11101 taacggatca atggcaggat tgaaaggatg tacatatgga tgcatatccg ttgatgataa
    11161 atcatgtttt tcataccaag tcgctgccgg caaaacaatg tcagaatata acggtgttgc
    11221 cgtcattctg aagtctaaag agaccactaa atctaactta cctgttgttt cttcacgcca
    11281 cgtaatttct tctggctttt catcttcatt tggtgtagct aataaccctg attttgtgcc
    11341 aagtaaatgc ttcataaagt attcttgacc ttttgcagaa cttgaaatta agtttgaacg
    11401 ccatataaat aatgattttg gatgattctt tttcaaatca ggatcttcta ttgcaaattg
    11461 tgtttgtttt gatttcactt catcaattgc acgttgcaaa atcgcttcat ttgaatctat
    11521 accttcatct ttagcttctt ctgcaaacaa caaactattt ttattaaatt gtggatatga
    11581 tggtaaccaa ccaagtctag ctgctaaaac attataatca gctggatgtt gatgctttaa
    11641 ctcctctgtt ttagctaatg gagattttaa acgatctaca tttgactctt catatttcca
    11701 ttggtctgtt gcaaaataga accaacttgt tccgttttgc aaacgtggtg gtccttgcca
    11761 gtctttcgca aatgcgacag tactccatcc ttcaatcgga cgacattttt cttgtcccac
    11821 atagtgagcc caaccgccac cgttcacacc ttgacagcca cataacataa ctaagtttaa
    11881 gattgaacga taaatcgtat ctgagttaaa ccaatggtta atacccgcac ccatgataat
    11941 cattgaacgc ccttcagtat cgatagcgtt ttgcgcaaat tctttcgcta cttgaatgac
    12001 aacactttgt tttacgcctg aaatggcttc ttgccaagca ggtgtatatt ttgattctgc
    12061 atcgtcgtat ccttttgatt ctaatttatg atcaaaacga cgcacgccat attgacttgc
    12121 cattaagtca aaaattgtag caatacggac tttgtcacca tttgctaaag tgacttgtcg
    12181 agttggaatt ggacgattga atatcccatc tccatcacta tcaaagtatg ggaattgaat
    12241 tgtttctaat tcgtatccac cttctgtcat tgataatgta gggttaattt tagaaccatc
    12301 ttctgtttct agttttaagt tccacttctt accttcttcc caacgttgac ccattgtgcc
    12361 attaggtact actaaactat cgctgattgc atcatgaata actggcttcc attcgccttg
    12421 ctctgttgtt tgacctaagt cactcgctct taaaaatcga cccgctttat atccattttc
    12481 atcttcatcc agcatgataa gaaacggcat atctgtatat tgtttagcgt aatttataaa
    12541 gcgttcatta ggttgattaa cataatgttc ttgtaaaata acatgcgtca ttgcttgtgc
    12601 aattgcagca tctgaaccag gattcggtgc tagccagtta tctgcaaatt tcacattttc
    12661 tgcgtaatct ggtgctactg aaatgacttt tgtaccttta tagcggactt cagtcataaa
    12721 atgtgcatcc ggagtacgtg ttaaaggtac attagagccc cacataataa tgtatgatgc
    12781 gttataccag tcacttgatt caggcacatc tgtttgctct ccccaaattt gtggagaggc
    12841 aggtggtaaa tctgcatacc agtcataaaa actaagcatt tcaccaccaa gcaaattgat
    12901 gaatcgagca cctgctgcat aactaatcat tgacatcgct ggaataggtg taaatcctgc
    12961 gattcgatct ggaccatatt tttttattgt atacagtaat tgtgctgcga ttatctctgt
    13021 aacgtctttc caatttgaac gcacgtgccc tcccatacct cgggcttgct tatattgttt
    13081 ggctttgtct tcattttcaa caatagacgc ccatgcagca acgcgattac cattgttttc
    13141 ttctaatgct tcagtccata aatcccagag ttttccacga atatatggat atttgattcg
    13201 aagcggactg tattcatacc aagagaatga cgcacctcgt ggacatcctc tcggttcata
    13261 ttcaggcata tccggaccac aacttggata gtcagtttgt tgattttccc aggtaatcac
    13321 accatttttc acaaatactt tccaagaaca tgagcctgta cagttaacac catgtgttgt
    13381 tcttacttct ttatcgtggc tccaacgttc tctgtacatt ttttcccatt ctctactttt
    13441 actttctagg atcgaccaat tcccattaaa tttttctgtt ggcttaaaga aattcaatcc
    13501 aaattttccc atatttatat cctcctacgt ataaaaatac gatgtgtaga tgtcgtgttt
    13561 ttaaatactt taaaatgccc aagactattg ctttaattag attgtacatt ttttcacaaa
    13621 cataaaatat tagggaatca cctaattact taaggaattt ccctatcaat aacgggattt
    13681 cattgaaata atacacaatc atgtatggtc atgcttattg ccaatctaaa tcgttcaaat
    13741 ttggcacaac gacaaataag gcttcaacac gaatatattc tctcggttga aaccttactt
    13801 attcatttat tttttataaa ttagtgacat aacactgtat tagcatctgc acgatcggtt
    13861 gaaatatatg ttacattttc ttgctgctta ataaatgcat catagtaatc atattgcgac
    13921 gaatgatatg tgccattcga tgtatcattt gggtttagca aacagccata accttcgtca
    13981 tataaatgtt cacagagcat aagggcgtca tgtttagaac cacttactac ataaaattgc
    14041 ttcataggat catatgattt aggagtgttt tcagtataat caacaacttc ccctataata
    14101 catatacctg gtttcgcctc aattgaatag tgttgcaatt ttgaaataat attacttaaa
    14161 cgccccttaa caacaaactc gttaaaacac gatgcttgaa agacaatcgc tatcgggtaa
    14221 tcaatatctg tgtattgttg tatctgtgtg ataattttcc ctaaacgttt tacccccata
    14281 taaattgcta acgtgccacc attcactaag gaattgacat ccacttcatt ttcttctgaa
    14341 tctttaaagt gacctgtaga aaatgtcaca cttttagcaa ctgtacgcat tgtcaaacct
    14401 gtctgcatag tagcaactgc tgcgctcgct gatgtcaccc ctggtacaat ttcaaacgca
    14461 atatgatgtt catttagtgt gtcgacttct tcttgcacac gaccaaatat cgctggatcg
    14521 ccacctttaa gtctaacaac cttgttatat cgacgcgctg cttccacgat acagtcattt
    14581 attttttctt gctgaatatg ttttgcatac ggctttttac caacatcgat aatttcagta
    14641 gtcaaattcg catattgtaa aattaacgga ttcactaatc gatcatatag aatgacatcc
    14701 gcttcacgta ttaaacgctc agcctttttc gtcaaataat tcggattacc tggacccgca
    14761 cctatcaagt aaaccttgcc atattcctct acagacatat atatacgttc ccgtctgtaa
    14821 cttctacctc ataaacatct acacaacctt catcaggttc ttgaacaata cctgtattta
    14881 aatcaatttt ttgatcgtgg agcgggcaaa atacatattc cccactcact gtcccttcag
    14941 acaatggtcc ttgtttgtgt ggacagatat tgtgaatcgc atgaattttg ccactttctg
    15001 ttaaaaacaa ccctacctct ttgcctttga caataacctt ttttccaatt aggggtgtta
    15061 attcatctat agttgtcact ttaatttttt cttttgtttc catgtattac accttctcca
    15121 cttcaaaaat tctacgtgct tgcgcattgc tagttattgc ttcccaaggt tcagcttcga
    15181 ctgctttttt agcatccata atgcgttcaa atagttcatt ttgtctttct gggtcaagta
    15241 agacttcttt tacattttca aatccaagtc ttcttaacca tggcgctgtt ctttcagcat
    15301 atatacctgt ttcgcgataa tattgcatca aagcaccaca taatttgatt acttcatctt
    15361 ctgtttctac agttgttaaa aattcagctt tttcaacttc tgtaccacca ttaccaccga
    15421 tatagatttg gaatccattt tcaactgaga taataccaaa atctttaaca cctgattcaa
    15481 cacaacttct tgggcagcct gatacaccca ttttgaattt atgaggtgta tcgatgtatt
    15541 caaatgtttt ttctaaacga atgccaagtc gtgtcgtgta ttgcgtacca aatcgacaaa
    15601 actctttacc aacacagctt ttaactgagc gtgttttctt accataagct gatgctgaac
    15661 gcatacctag gtcttcccat atatttggta attcttcttt tttaactcca tacaaaccaa
    15721 cacgttgtga acctgtcact ttaactagtg gcacatgata tttcttagcc acttctccta
    15781 gacgaatcag ttggtctgca tctgtaacac ccccacgcat ttgaggtata acagaaaatg
    15841 taccatcatt ttgaatattc gcatggtaac gttcgttagc aaatcttgat tctctttcat
    15901 cttcatgatc atgtggataa accatgttta aataatagtt gattgctggt cgacattttg
    15961 gacatccacc tttattttta aagtttaaaa catgtcgaac ttctttagat gtttttaaac
    16021 ctttcgctct tatttgcgtt actatttgat cgcgtgtcaa atcagtacaa ccacatatac
    16081 cagcaggttt tgcggcaaca aagtcatctc ctaaggtgtg ctgcaatatt tgagcaattt
    16141 gcggtttaca tttaccacat gaattccccg cttttgtttt agccgttact tcttcaactg
    16201 ttgtaaagcc attttccgta atcgcattta ctatagtacc tttatcaaca ccattacaac
    16261 cacaaattgt ttcatcatca gccatatcag caattgatag cgatgcctct tctccacctt
    16321 tagtaagcaa tgatacaagt gtgtaatctt cagtggattc accttttttc atcatgttat
    16381 aaaagcgtga accatcatcg atatcaccat atagtactgc accaactaca ttaccgtctt
    16441 ttaaaaagat ttttttatag ttattatcaa cactattaaa tatttcaata cctttaattt
    16501 ctgcattttc tacaatttga ccagcactat acaagtcaca cccagaaact tttaatgacg
    16561 taaatgttgt tgatcccttg tatccgttcg tttctttatt tgttaaatga tcagctaata
    16621 ctttaccttg ttcatatagt ggtgcaacga gtccataaac tttgccgtta tgttctgcac
    16681 attcaccaac tgcatataca ttgctatcac ttgtttgcat cacatcattg acaacaatac
    16741 cacgattaac atctagacct gattctttgg ctacttctgt gtatggtcgt atacctactg
    16801 ccataacaac taagtctgcc ggaatctcgc gtccatcagc caatttaaca ccctcaacat
    16861 catcttctcc taagatttca gttgtgttgg cttgcatttc aaacttcata ccttgctttt
    16921 ctagatctgc tttaagcata tttccagctt tacggtctag ttgcatttcc atcaaccatt
    16981 cagctaaatg taacaccgtt acttccatac cttgatctaa taaaccacgt gcacactcta
    17041 aacctagtaa tcctccacca attacaattg ctttcttttt agtcttagca atgttcatca
    17101 tttgttcagt atcatcaagc gttctccaac caattacact cggtaatgtc gaacctggaa
    17161 ctggaatgac gaatgcttta gaacctgtcg caaaaatcaa tttatcgtat gatacttcaa
    17221 taccatttgc agtagtaact gattgatttg ctctatctac ttcaattaca ggatcatttg
    17281 taattaactc gataccatgt tcctcatacc actcatatgg attcataatt gtttcttcaa
    17341 ctgtcatttt attttgtaaa atatttgaaa gcatgatgcg gttatagttt ggataaggtt
    17401 ctttacctat taccgtaata tcatataaat cgttggcgcg ctctaatatt tcttcgattg
    17461 ttcgaatgcc cgccataccg ttaccaatca ttactagttt ttgctttgcc ataaaatatg
    17521 cccctttact ccataatatt tatttcaaaa aaaggtatta atttttcgtt agtgctttta
    17581 tattttcatt ggaatcatta agctttctaa tctatcgtta atgatttgct ttaaaattgg
    17641 gtcgaagtta attgaaggtg tgaagtgtat atctgtatta ataaccatgt cattcatttg
    17701 ctgcttcact ttgttaacaa gtcttccgtc atataaaaat aatggtacga caatcaattt
    17761 ttgataccgt ttcgagatgc tttctaaatc atgtgtaaaa ctaatctctc catatagcgt
    17821 tctcgcatat gtcggcttgc taatttgcaa attttgagcg catatttgta actcttcgtg
    17881 tgccttagta aactttccat taatattgcc gtgtgcaaca accataactc caacttgttg
    17941 ttcgtcacct gctaatgcgt cacaaatacg ttgttcaatt aatcgtctca ttaaaggatg
    18001 tgtgccaagt ggctcgctta cttctacctt tatgtctgga taccgtcgtt tcatttcatg
    18061 aacgatattc ggtatatcct tgagataatg cattgcacta aagattagca atggtacaat
    18121 tttaaaatgg tcaaccccac tttgaatcaa cgtcgtcatt accgtctcta aatcctgatg
    18181 ctcactttct aaaaacgcaa tatcatagtg atgtatatca tcttttacta attcagaaat
    18241 aaatgcttct aacgcttgat tctgtcgtcc gtgcctcatg ccatgtgcaa caatgatatt
    18301 cccattcaca tttaccaacc ctttcacacg tattgtatac caaatcattt tgtttttgtg
    18361 aaaagaatca cattataatg taaaatcagg gaattccctg atgcctgtag tcatgcatat
    18421 tccttataca ttttcccttt ttgttaaatc aaaaaaagcg accgatatat gaatccctac
    18481 tcaacattta tttgagcaag cattaatata tcggtcgctt gtagtgtata ttattatctt
    18541 aaaatggtgg ttggcctaat attgtttcgt caaagcgctc gggtatcaat actttgcgca
    18601 tgatcacacc taaatcgcca tcatcatttt catgttcgct gtatatttca taacctcttt
    18661 tttcataaat tttaagtaac cacggatgca atcttgcaga tgtacctaaa gtaactgccg
    18721 ctgactttaa cgtatctcgc aaaaatgctt cttcaacata agtaagtaat tggctaccat
    18781 agcctttccc ttcatactca ggatttgtcg caaaccacca gacaaaagga taacccgaaa
    18841 tacttttcac acttccccaa ggatatctaa ccgtaatcgt agatataatt tcatcatcaa
    18901 ttgtcatgac aaatgtagta tttttatcta tattttcttt aacagcatct aaattagcat
    18961 taaccgaagg ccaatcaata cctagttctc ttagaggcgt aaatgcttca tgcatgagtt
    19021 gttgcaattt ttctgcatct tgttcacttg cgagtcgaat catcgttttt gtcatattaa
    19081 tccccactct tttttaaatg atttaaccat attttatttt taaaataaat atccatcaaa
    19141 gtgtatcaat aaatttatca catgtcagaa agtatgcttc atctgaatac accaatactc
    19201 tcatgaaact tattaaaaat tactctctca acgtaaaaaa ccattcaaat tcatgaatgg
    19261 tttggaagaa tgattcattg ttacgctatt taatcactac atcttaatta ttgttgctct
    19321 aaacgattac gcttaccatt taagaaagca taaacgagac ctacaaaaat accgccaccg
    19381 acaaagttac ctaagaaagc aaaaacgata ttttttaaaa cgtgtaacca tgaaactgca
    19441 tcaaggttaa agaataccat acctgcatat agacctgcat tgaacacaac gtgctcatat
    19501 cccatgtata caaagaccac gacaccacaa gctatgaaga atgcctttgt taagccgcct
    19561 ttgaattgca tagagatgaa aataccaata ttaataaaga agttacagaa aatacctttt
    19621 gtaaaaatat tcaaccatgt tgaatcaaca gtctttttct gaactaaagc tgttaaagct
    19681 tgtgtcattt caggtgtcat gacatgcgca aatttcatta agaaaaataa cacaaaccca
    19741 cctaaaatat ttcctaagaa acaatataat aaaatccaag tcatcttctt aacagaaacg
    19801 actttataat accagcctac tgtaaagtac atgaagttac ttgttaataa ttcagagtta
    19861 gttaatacaa ctaaaatcaa acctaaacta aacgcaatgg ctcccattaa attgataagt
    19921 ccatctacgt gagtactcgc aaactgcgtc tttattccga acataaatac agtaacgatt
    19981 gagagtaaaa atccggccat cattgcttta agcatatatc ggccaggtgt ttgctgtacc
    20041 attacttgct tcatttgtac tgaagatgat attgaatcaa caattgcgcc tgttgaatat
    20101 gtatcttcaa ctgttttctt attttctatc acagtacttc ccccatttac tttgatcaaa
    20161 taaaatttac tttctaatta tattagtaaa tcaatgtaat tgatagatta aatttcagaa
    20221 aaatcttttt attctctcga aaatgtagtt ttctttcata aaaacagcga gataaatcgc
    20281 gtgattggct aatatcttta tgatttaaga tattacgacg ctcattttat ctcgctttat
    20341 gtaaagtatt acttattctt ttttaaattt gaaaagtaat gtaaaccata tgcaaataca
    20401 ctgtaaccaa ttgcagtacg taaaataaac cttataactt tattaggtac acattttgac
    20461 gttactgaaa tagaagatag tagtgttgtg aaaatatata atattaaaac tttgatataa
    20521 cgttctacca tcgaatcatc cctcattttt ataatattac aagattatta taaaccgaat
    20581 gaaacaaaaa agtttttaca tattttcaac aactttattt caataaagca tcaagttgat
    20641 ctaaagtttg attcatacct tgttcaacac ccatgtttat gacttgttga gcggcttctt
    20701 ttgttggaaa taccgatgtt gatgtcactg tcgttttcgt tgtattgctc ttggaaaatg
    20761 acaaagtaat tttcatgctt ggcatttttg tatcttttgc accttgaggt gtcgcaaatg
    20821 agtcaatata ttcaattaaa tatggacgct taaccgtttt atattctgct aatgtatagc
    20881 tggtcattgt aggtgtttta atcgcataaa atgcatcacc gcctgaaaca gcattaaagc
    20941 gaaacacttt ggtactagcg tcttttggat gaaaccattt ttcaaataat gcttttgtcg
    21001 tataggcatc aaacaccttt tcaatcggtg cttctatcgt tcttgaaaaa ataattttat
    21061 tatcttcaac tttaatcgtc atcttcccac tccctatctt ttatatttac tcatcttaac
    21121 atgcattgag taacatatgt taccaaatca tttgttataa actatagtaa tattaatcat
    21181 tccctctgtt gaaattgata actacgaaat aaaaaacaca ctctattcag ctattaacag
    21241 ttgagtagag tgtgcaaacc tgttgaatta atgcgctaac atttcttctt tgatttggtc
    21301 tttatttaat tttgaaggat aatatgttgg ccagttatcc atttctttta ataacgcgtc
    21361 attatcatta cccataaaga tatggaagtg ttctgccttt ttaggtgcaa tgttgtgatc
    21421 gctaaattgg atgaatttcg gtaagtcttt atcattacca tcgaccaatt taaacataaa
    21481 tctcacgcca cggttacctt taggatattt caatgttttc ttaccattgt attcatattt
    21541 accagtgtgt ttcttaccat ctttagtaaa tgtaatttca tttcctttta tatcaatgtt
    21601 agtaatatca gttttatatc ctttgtcata ataagctttt aaatctttag cagatttctt
    21661 cggatcattt tcagctttat gttccatcac ttcatcaagc gtaccgtctt ttaagtaagg
    21721 gtaaacagat tgccattcac cagcataatc gcttaattca cggtctttaa cttgctcatc
    21781 tttaaaatac ccatcagaaa ttgctttgtc atgtttactt tcagctttgt cgtctttcac
    21841 tttaacacca ctgtctaaag ctttaccgat attttcaata ttagatttca ttaatgattg
    21901 atacgtaata ttatcttttt tctgttgttc tttatttaaa gactccatgt tgtagaattt
    21961 taaaggcttc gcatctgttt ctttacgaat tgtttcagtc actttattcg caacattatc
    22021 ttcgtaaaga atatatttag cattgctatc tctaatttct ttaacaattt tagttaattc
    22081 tttttgtgat ggatcttcag cattcatgtt ttgaatacct ttttgaacaa aaccataaca
    22141 atcagctaag tatccaattg attcatgtga aatgaatact gcattacctt gcttatcttt
    22201 tgtaacttgc ttcatatcgt tatcaatttt cttaagatcg tcgtttaatt ttttgtagtt
    22261 tttctcatag tcatctttat gttttggatc ttttttcact aattcatctt taatttcttt
    22321 agcgaaagtt tggttaattt taggatctaa ccatacgtgt ggatcatatc caccatgatg
    22381 atgatgatgt tcttctttct catgatcatg tccctcatgt tcatgctctt caccatgctc
    22441 gtgttgatca gttaaaagct ttgctttatc taatttatcc tctaaagaca gttttttatc
    22501 tttatctttg atagtagatg caactttctt agcaaccgga tctaaattat cccctgtata
    22561 cataaacaag tctgacttgc ttgcacttaa tatatctttt tgtgttggtt catagctatg
    22621 taaatctgtc cctgctggat agattgatga taccttcacg tgttttccac caatttgctc
    22681 tgcaaatgat tgcaatggat aaactgtcgt tttaattgtt accttgccat ctttatcttt
    22741 tccatcatca ttcccacatg cggctaatga taaagttacg gctggtacaa gaagtaacat
    22801 acctaatttc tttttcatag tcaccctcct aaatagtaat ctttacgttt taaaattata
    22861 tactcatgct acttaaaata caagcactgt ttttataaat aatataaagt cgaatcatac
    22921 tttaggtatt taccactttt cgttttatct aatacatgac tattgtacaa atatgataca
    22981 gaaaacttta tagtatttac gaacgtcata atataagaaa aaaagacaat ctctatcata
    23041 ttgctaatag aaattgcctt ttcatattgt cctaaaataa cttaccctat ttttatagtg
    23101 tgacttttag atttaataat ggtatttaca tgatgctatt tttatatgat tgtcatctac
    23161 tgtataaacc aatctatgtt cgtgattgat acgtctacta taatacccag tcagattcga
    23221 ttttaacttt tcaggcttac ctataccttc caatgcacca tttctgtcaa tacttttaag
    23281 taactcatta atcttcttca ccattttttt atcgttctgc tgaaaatact tataatcttc
    23341 aaaggcttga ggcgaaaacg taatatttaa cctagccatt atacatctat atctttcgtt
    23401 atagttttcc cacgttctag atctgcaatt gattgagcta agtgttcagc attatttggg
    23461 ttctgttgga ggtaaagtgt ttccatcatg gagttataat ctgattctga catgattact
    23521 acgtttttat catcagtaga tgttacagtt accataacac tatcatcatt tacttttgtc
    23581 ataagtgcct ttaaattctg tcgagcgtat gaataatttt taataatcat atttatcgcc
    23641 tccttttaac acacctcaat tgtacaaata tctgtacaat aaaacaagcg acacagaaaa
    23701 aaactactaa tcaagatttc gcacggggaa gaatcaatac ctatcctgta ctgattccct
    23761 actaaacaat gtttacatga taatttccac ctatttagac ttcatacatt aaaaagacaa
    23821 tctctatcat atcgctaata gaaattgcct tttcgtattg tcctaataaa ttggtatcac
    23881 ttactgatct caacaattaa gactatttga ttttatcttt taataacttc tcataacttt
    23941 cataatcata tggatcttca actttctcgc cattaataaa tgcagttggt gtcgttttta
    24001 tatgattatc tttcgctatt tttttatctt tctctgcagc tttccaagac ttgctatctt
    24061 ttgtcttgta atcttttata attttatttt ccgtctcttt atctaaatgc agttgtttaa
    24121 tatgtttatc taatagttct tttgttaacc attctttatt ttcatcttgc tgggcagcaa
    24181 ataattgctt ttgaaaatct aaaaatgatt taggtgcata catcaatact gcatgactcg
    24241 cacgcgaacc aacaattgag tctttaccta agaaagctaa attgacaaat tggtattcca
    24301 ctttgtgatt atctatataa tttttacgca actttggcat gactttttca tctaattctt
    24361 tacaataagg acatttatag tcgccatata cgacaactaa tggtttgccg tttttcgaag
    24421 atgtcgttgc tgattctttt ttaccgcaag ctgttaaaat taacatgctc actataaata
    24481 atgttagtaa ttttttagtc ataataactc ctattcatat ctagttcgtc atattttctt
    24541 catgataatc cgcatcatgt tgttgataat atcgtctcga atcaaaatct tgcttatatg
    24601 atacacgttt atcactaaaa tcatatgcat aataatgcac ttcatcatta ctcaaaggtt
    24661 tataagctaa aatgataatt ttatccttat catagacata aatattagca tctttgcgtt
    24721 caaaatgatc aacacgatca ccgttgcctt ttttggcaag ttgttcttgt ttttgatttt
    24781 gaattttaac tgcttcatct atttctttca catatttatc attaccacat cctgatataa
    24841 agactagtaa taataatacc gtcgccacaa atcgcttcaa tgctcccact cctactatca
    24901 acttccaact aactttcaat ataattaata ctatacaccg tcaaacatta atgcgctaca
    24961 actactacca atgcatttaa tataaatatc caaagaaata acagttatgt atagtcaaag
    25021 aaaaatatat ttcattttct atgtgtattt gtaatcagtt tttgataaaa taaaaaaata
    25081 gcattattaa taaattcaaa aattatagtt caattcagag agggatggga taaaatgaac
    25141 tttgtaacgt tgacttcgga tgagttcaat gcgtttacaa caaagcattt ttcacattac
    25201 acacaatcag ctattcatta caatcataga gttgatttaa aaggcgatgt gcatcttgta
    25261 ggggttaaag atgacaatgg tcaagtgatt gcaggatgct tattgacaga agcacgcaca
    25321 cttaaatttt tcaaatattt ttatacacat cgcgggccag tgatggatta tacaaatcaa
    25381 tcattagtag catttttctt taaagcatta acgtcatatt taaagaaaca caattgttta
    25441 tatgtccttg tagatccata tttaattgaa aatttacgca atgcagacgg tgaaattgtt
    25501 aaatcttatg ataaccgagc atttgttaga acaatggata aattaggtta taaacaccaa
    25561 ggtttccctg taggttatga ttcaatgagc caaatccgtt ggctgtcagt gttagattta
    25621 aaagataaga ctgaagacca acttttaaaa gaaatggatt atcaaacgag acgtaatatt
    25681 aaaaaaacat atgatattgg tgtcaaaact aaaacgttaa cgattgatga aacgcaaact
    25741 tttttcgact tattccatat ggctgaggaa aagcacggtt tcaaattccg tgagttacca
    25801 tactttgaag aaatgcaaaa gttatacgat gaccacgcca tgttaaagtt ggcgtatatt
    25861 gatttaaacg agtatttaaa aacgttacaa ttaaagcaac aacaattaac agctgaactc
    25921 tcaggtgttg aagaagcatt ggaagaaagt cctaattcaa agaaaaataa aacgaaacgc
    25981 acacagctag aacaacagct aaatagcaat aagcgtaaaa tcgacaatac aatagaacaa
    26041 attgaacaag atggtgcagt cttaaactta gcttctgctt tatttatcta caatgagcat
    26101 gaagtttatt acttatctag tggttcaaac cctaaatata atgcttatat gggtgcctac
    26161 catttgcagt gggaaatgat taagtttgct aaagcgcatc atattgatcg ctataatttt
    26221 tatggtatta ccggtgactt ttcagagtca tcagaagact atggcgtcca acaattcaaa
    26281 aaaggtttta acgcacatgt agaagagtat atcggtgact ttattaagcc tatcaaacca
    26341 ttactatata aggtacaaac gtacttaaat cataaacgtc gttaaaatat cgctccaaga
    26401 ttatgacaac ataacaaaga accacgcatc atgtatatgg cttcatcgcc atactaaaac
    26461 atgatacgtg gttctatttg attattcttc atttataaca tttaagaaac gtcttaattc
    26521 ttctgttttc ggacgattga acatctcttc tggagcccct tgttctccga tcatgccttc
    26581 atgaataaat acaatgttat tagatacttc tttagcaaaa cgcatttcat gtgtcacaat
    26641 gaccattgtc atgccttcat tagccaaatc tttaataacc tttaaaacat cattcacaag
    26701 ttcaggatca agtgcagatg ttggttcatc aaacaacatc actttagggt tcattgctag
    26761 tgctcttgca atagcaacac gttgttgttg accacctgat aatgcatgtg gacgttgatc
    26821 tttgacatgt gttaaaccaa ctttctcaag taactcaagt gatttcccac gtgcctcatc
    26881 ctttttcaac tttttaactg tgataagacc ttccattaca ttttctaatg ccgtcttatg
    26941 cggaaaaagg ttataacttt gaaataccat accagactgt ttacgaactt ctatttgtga
    27001 ttttttatct ttagatgtat atgttttgcc gttaacataa actgtacctt cagttggaat
    27061 ttctaatgca ttaatcatac gtaacaatgt tgttttacct gaaccagatc gaccgattaa
    27121 ggttacaacc tcaccttgtt caacagataa atcaatacct ttgatgactt caacatcatt
    27181 aaatgattta tggatattgt tcaattgaat catgagcgat accctctttc aatataagat
    27241 tcatagatac cttggataat tgaaataata aagcatacca cccagtacat tagcgcaact
    27301 aacacataaa ttgttaaata ttcatatgtt gtagacgcaa cttcttgagc ttttctaaac
    27361 atttcagcca ctaaaataaa tcctaataat gatgtatctt tgattaaact taaaaatgta
    27421 ttacctagtg caggaatcga cactcgaatt gcctgcggta aaatgatacg ttgtatcgtt
    27481 tgaccatacg tcataccgat ggaatatgca gcttctgttt gtcctttcgg tatagaaata
    27541 ataccgccac gaataatttc cgaagcatac gcacctacat ttaatgataa accaataata
    27601 gcagccacta caggtgccaa tgtccattgg ttgtcagcgt catttgttaa taatctacct
    27661 aattctggaa taccataaaa tatgataaat agttgtacta tcattggtgt tcctcgaata
    27721 atagatacat agacacgtga aatacttctt aaaattttac tcgttgaaat tcgcattaat
    27781 gctgtaaata atgcaataat caatcctaaa acaaatgtaa ctaatgtaat aggaattgaa
    27841 tatttgacca aaccttctag cataggtccg aaagcttgtt ttgcagcatc tagcgcatgt
    27901 tgttgttcgc tatttagatt tagaaacatc ttgaccaaac catttcttac ctattttagc
    27961 taattcaccg ttttcctcga tttttttcaa gccatcattg aatttttgaa ctgtttcatc
    28021 atctgctttt ttagaaaatg caaatgcaga tctactttgt tcagcattac ctttgattgc
    28081 tttgatctta gcattaggtt tttgtttttt ataatccaag tatgacagac tatcattaaa
    28141 tgtaccatca acacgcttag acaataataa atccattgat tggttaaagc catcaacttt
    28201 tgtaatatca gcacctttat ccttagctaa tttaccataa ttagatgtga atgtttgtgc
    28261 taacttctta cctttaacat catcaaaatc tttaatatct ttttcatttt cacgaataac
    28321 taaaacagca cttgagaatg tgtaaggctt agaaaattta tatttctttt ctctatcagg
    28381 attaatacct acttggttcg cgattacatc aaaacgccct gcgtctaaac ctgcaaacat
    28441 agaatcccaa gaagtttcat taaatttaag ttttaaacct tcttctttag ccactgcttt
    28501 aataacatca atatcgtaac cagttaattt accatcttta tcgtggaaac taaatggtgc
    28561 ataagtcccc tcagtcccaa cattaattgt cttgctatct ttactagctt ccttgtcttt
    28621 cgacgaattg tttccgcatg cagccaatat gaaaacgaaa gctatcatca caaataaaag
    28681 tcttttcata gaatatatct ccttattctt attattctaa tcggaataaa aatattttaa
    28741 tctgaaatgc cggataagtc aatatgttga acttttgcta aaaagcttta tatagctagc
    28801 aacttatatt tattgacgag aatcaacttc ttttttctta ccttgtaaca taaatgaaca
    28861 aaagaaacta acaactgtaa tcaataatgc aaataaaaat ccagcgtgat aaccatgcaa
    28921 catcgtatca actttaattt gattcatcat atcaattttg ttcatgccat tatagtctga
    28981 catagttgga gaaaagtttt tgcttgcatg ggataaaata gtaattaatg cagctgttcc
    29041 gatagaacca gcaatttgtt gtactgtgtt tgtcatagat gaaccatgtg cattcatttc
    29101 tggctttaat tgattcatcg tatgggtcat tactggaatt aatcctaacg cgataccaac
    29161 cattcgaatc gcataaactg ttgccaacat gattgttgat gtttgttcat ccattacaac
    29221 aaaataagcc gtagtaataa caacaatcgc catacctact aaagcaagat ttctaggacc
    29281 aaacttttca tataaagcac ccgaagtcat cgacataaat gccataacaa ttgctcctgg
    29341 taataaagtt aatccagaat ctaaagctga acgatgcaat aaattttgca caaagatagg
    29401 taaaatcgtt tccgaaccaa tcatcgatac cattgtgaca cccataataa tgataccaac
    29461 tgtaaattgt ttatttttaa atacagcaaa atttaataat ggtgttgata gccgatattg
    29521 acgtaataca aataatgcga ctaaaacaac gcctccaatc atagatacta atacgatagg
    29581 attatcaaaa cctttttctg aaattgaact cgttccatac aataacccgc cgaaacctag
    29641 tacagaaaaa atgacagaaa taaaatcaat aggtacttta attgtagttc caacattttt
    29701 tatcgtttta aatccaatta aaaatgtcac agctgcaatt ggagcgacaa catggaaaag
    29761 cgatctccag ttaaaatatt caacaaggta acctgaaaga gtaggtccaa tagctggtgc
    29821 taaaccaatt accaaaccaa atatccccat atatttaccg cgttcatgtg gttggaaaac
    29881 atccaaaatc gttgtcatca tcaatggcat cataatacct gcgcctaacg cctgaataat
    29941 tctagcaact aataatgttg caaagtgcgg actcaagccg ccgagtaatg tacctaagaa
    30001 aaagatagaa atacccacta aaaacacttg tcttgttgta taacgttgta taacaagcgc
    30061 ggacaaagga ataacaatcc cattagtcaa taaaaaagct gttgtcagcc attgaacttg
    30121 tgtatatgaa atttcaaaat ctttcataat acttggtaaa gccgtcacta atagtgtttc
    30181 atttaataat ccaaaaaatc cacccatcag catagtaata atcatcgtta atttttgttt
    30241 cttcgacatt taaagcttcc ccctcaccat ctaaaaaacg acacacattt ttagatatcc
    30301 ggtaattata cccattttcc aaaaaattag cacgacttta ttacaatttc tttaaaacgt
    30361 aatcattact atttacatat gagtagttat cggtcataat atatttacaa ggagggatag
    30421 agatgaaatt agatttacag actgctcgtc gtaatttaaa tagccctaac attaaaacaa
    30481 gaaagcgtgc tttaaagatt attaagcaac ataaaagagc gaaataattg ttttaatttg
    30541 actatattgt atgtctaact atattttcga gtatccctag ctcgttaata taaactctat
    30601 acttaactat ttccttacat tacttcacat atttaagagc tgcatataca ctcactcctt
    30661 gtgtacatgc agctcttttt ttataagtag tatttatcta taacttctaa atcatccgtt
    30721 aattcataaa caagcggtgc acctgtttta atttcataat taatgatatc ttcatctgac
    30781 acatcttcaa gatatttaat caatgcgcga attgaatttc cgtgtgcaga aactaatacc
    30841 gtttgaccat ctagcaaata ttgtgaaata tgatctgtcc aaaatggtat cactcgaact
    30901 aaagtatctt tcagactttc agaataaggc atcatacgtt tatctaaatg attatatcga
    30961 cgatcagcta agtaagcttc acgttgttct tcggtttcag caggtggttt cacatcataa
    31021 gaacgacgcc aaatatgtac ttgttcttct ccaaattctt ttctagcatc atctttattt
    31081 aagccttgca atccaccata gtggcgttca tttaaacgcc agcttttata tacaggaatc
    31141 cattgttgtt tagattcagt taaaatataa tgcgttgtat ctaaagcacg tgttaataac
    31201 gatgtaaaag ctacatcgat ggcaatgtta ttttctctta ctttttcacc tgctctagtc
    31261 gcttcattaa taccttgttc agataaatta acatcttccc atccagtaaa taagttttta
    31321 gcattccact cgctttgtcc atgacgacat aaaattaatt ttggcataac ttataacctc
    31381 tttcctttaa tctttaggac gttatttcag ggatatttta agatgattta atcttagtaa
    31441 ttttcttttc aatatatttt aaaattcaat gattaaatca attatcacta gacattaaat
    31501 acataaatcc tattccccat tttcattttt taattcataa atgaatcaat aaccacctaa
    31561 taacaaatca tattatacac ctttgttcgc tatttttcta aggtttaaaa aatattttta
    31621 ggtaaaccta aaaatagatg taataaaaac gcctcctcag atatttatat atctatgaag
    31681 acgtttaaat acattataga tggtctggtt ctgggtgaac gtatactgag gaaatacctt
    31741 ttttgtgcaa atgatgttcg acattgtcac aaatttgatg cgcttctact aaggaaaggt
    31801 tagcatctac aacaattgtg acatcaataa acacactact tccatggtaa cgccctttaa
    31861 tacttttaac ttcttgtact tcatcaactt ctaaaatatc attgcgatac gcttctaatt
    31921 cagtttcatt gaaaccatca ctcaacataa aaattgcttc tttaaaaata ccaaaaccag
    31981 tataaacgat tagtaagcct agtaatgttg ctaaaataat atcgacaatt gggaaaccga
    32041 tttgcgtaaa aattaatcct atcgctgttc caatgctgac taaactatcc gataaattat
    32101 ctttggcagc cgaatttaaa gaactacttt tcgttctttt cgctagtctt tgattgactg
    32161 caaatacaat caacattaca agaccactga ttaagctgac gataattgtt attgcgttag
    32221 gtacaacgtc atcttctttg aacaaacgag gtgcattttg aataactact tggataccta
    32281 caaacataat gacaaatgac accaataatg aagaaatatt ttcagacttc aaatggccat
    32341 aaggatgatt tcgatcggca ggtttaattg aaattttcaa tccaataata acagctaaag
    32401 aaacgataat atctgtcata ttgtttaatg catcggctct tacagctgca gagttaaaga
    32461 caaaacccgt gacatactta acaatagata agattatata tacaattaaa ctcaaataag
    32521 caccgcgttg cgccaattta agattttcat tatgagacat gcgttgaacc accttgaatt
    32581 agtatagtaa caatattatg aatgattcat tttaatttta caacgttttt aatttttata
    32641 aatttttata aaattaaact aatttattca ttcgcaaccc ctaaaaataa tttttagcct
    32701 ttctgcgaat tttatgagct agaaaggcgc ccaactctcc ctgtttgtta actttcgcct
    32761 cgaaagtttc tatgttggga ccctatgcat tagtagcgaa gctatctaat gtgttccttt
    32821 attttctgcg aattttatga gctagaaagg cttatgcagt tgacgtttta cgtccaactg
    32881 cgttcctccg tcttcttcaa atttatttgt tagaaaggca cccaactctc cctgtttgtt
    32941 aactttcgcc tcgaaagttt ctatgttaga accctatgca tgagttgcga agctatctaa
    33001 tgtcgtgaac taattatata gaagaaaaag tgcatcaatg acaaattaaa tgagatttct
    33061 actctaccaa actctcttcg aaagacaatt ttctcctcta tttattagca aactattgca
    33121 tttctccata tagtacttcc ttacttaaaa tacgctgaat gttctgaatt aaacgctttt
    33181 ttacatagtt aacactagtt aatctattag ttaacattag ttaataatta gttaatttcc
    33241 atttgtattc tcatgtgata aattctaaaa gcatacaata aatttaatat gtaaaaagaa
    33301 agggaataca catgaaaaat aaatatatct cgaagttgct agttggggca gcaacaatta
    33361 cgttagctac aatgatttca aatggggaag caaaagcgag tgaaaacacg caacaaactt
    33421 caactaagca ccaaacaact caaaacaact acgtaacaga tcaacaaaaa gctttttatc
    33481 aagtattaca tctaaaaggt atcacagaag aacaacgtaa ccaatacatc aaaacattac
    33541 gcgaacaccc agaacgtgca caagaagtat tctctgaatc acttaaagac agcaagaacc
    33601 cagaccgacg tgttgcacaa caaaacgctt tttacaatgt tcttaaaaat gataacttaa
    33661 ctgaacaaga aaaaaataat tacattgcac aaattaaaga aaaccctgat agaagccaac
    33721 aagtttgggt agaatcagta caatcttcta aagctaaaga acgtcaaaat attgaaaatg
    33781 cggataaagc aattaaagat ttccaagata acaaagcacc acacgataaa tcagcagcat
    33841 atgaagctaa ctcaaaatta cctaaagatt tacgtgataa aaacaaccgc tttgtagaaa
    33901 aagtttcaat tgaaaaagca atcgttcgtc atgatgagcg tgtgaaatca gcaaatgatg
    33961 caatctcaaa attaaatgaa aaagattcaa ttgaaaacag acgtttagca caacgtgaag
    34021 ttaacaaagc acctatggat gtaaaagagc atttacagaa acaattagac gcattagttg
    34081 ctcaaaaaga tgctgaaaag aaagtggcgc caaaagttga ggctcctcaa attcaatcac
    34141 cacaaattga aaaacctaaa gtagaatcac caaaagttga agtccctcaa attcaatcac
    34201 caaaagttga ggttcctcaa tctaaattat taggttacta ccaatcatta aaagattcat
    34261 ttaactatgg ttacaagtat ttaacagata cttataaaag ctataaagaa aaatatgata
    34321 cagcaaagta ctactataat acgtactata aatacaaagg tgcgattgat caaacagtat
    34381 taacagtact aggtagtggt tctaaatctt acatccaacc attgaaagtt gatgataaaa
    34441 acggctactt agctaaatca tatgcacaag taagaaacta tgtaactgag tcaatcaata
    34501 ctggtaaagt attatatact ttctaccaaa acccaacatt agtaaaaaca gctattaaag
    34561 ctcaagaaac tgcatcatca atcaaaaata cattaagtaa tttattatca ttctggaaat
    34621 aatcaatcaa aaatatcttc tctagtttta catcattttt taaataattt tcgtaacaaa
    34681 ccgtgattaa aaagaaccgt tgattctcaa tcgaatctac ggttcttttt tcattttcca
    34741 tcaattaaat gcttcttcgc tatttgtcag cccacttttt tacctgcaac ttgttaaata
    34801 atccttacat cgttaacgaa tagttcatca tttagttgaa tcagctcaac tttattaact
    34861 tcatattttc acaaactatt gcgcaatcca ttccttttcc actacaagca ccataattaa
    34921 acaacaattc aataaaataa gacttgcaaa gcatagttat gtagctatat aaacgcctgc
    34981 gaccaataaa tcttttaaac ataacataat gcaaaaacat catttaacaa tgctaaaaat
    35041 gtctcttcaa tacatgttga tagtaattaa cttttaacga acagttaatt c
//
LOCUS       DAMQWL010000015        31997 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.015, whole genome shotgun sequence.
ACCESSION   DAMQWL010000015 DAMQWL010000000
VERSION     DAMQWL010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 31997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31997
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.015"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..239)
                     /locus_tag="PF788_000681"
     CDS             complement(<1..239)
                     /locus_tag="PF788_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase"
                     /protein_id="HDG6302959.1"
                     /translation="MTNQDNNHQLNHRIYHFEKIYKAIKHVIVFIFMIFIAIVAIAVI
                     AMSLYFHHLTKTSDSLSDDALIKKVRQIPGDELLD"
     gene            621..1883
                     /locus_tag="PF788_000682"
     CDS             621..1883
                     /locus_tag="PF788_000682"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDG6302960.1"
                     /translation="MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTAD
                     SLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEG
                     ISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLE
                     HGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYG
                     LTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGK
                     EEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAK
                     ELKDGFKDVPQVTLSNDTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNY
                     ALAPEDKIDGEFTIIRRGKKKYFMVNYQ"
     gene            complement(1977..3251)
                     /locus_tag="PF788_000683"
     CDS             complement(1977..3251)
                     /locus_tag="PF788_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDG6302961.1"
                     /translation="MSDFNHTDHSTTNHSQTPRYRRPKFPWFKTVIVALIAGIIGALL
                     VLGIGKVLNSTILNKDGSTVQTTNNKGGNQLDGQSKKFGTVHEMIKSVSPTIVGVINM
                     QKASSVDDLLKGKSSKPSEAGVGSGVIYQINNNSAYIVTNNHVIDGANEIRVQLHNKK
                     QVKAKLVGKDAVTDIAVLKIENTKGIKAIQFANSSKVQTGDSVFAMGNPLGLQFANSV
                     TSGIISASERTIDAETTGGNTKVSVLQTDAAINPGNSGGALVDINGNLVGINSMKIAA
                     TQVEGIGFAIPSNEVKVTIEQLVKHGKIDRPSIGIGLINLKDIPEEEREQLHTDREDG
                     IYVAKADSDIDLKKGDIITEIDGKKIKDDVDLRSYLYENKKPGESVTVTVIRDGKTKE
                     VKVKLKQQKEQPKRQSRSERQSPGQGDRDFFR"
     gene            3423..4040
                     /locus_tag="PF788_000684"
     CDS             3423..4040
                     /locus_tag="PF788_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HDG6302962.1"
                     /translation="MYSVISKILNFILVKMSKSLYVIGKDNIPKDSKYVVTCTHESYN
                     EVIMLGMALYPNQIHYMAKKELFKNKWIGKFLTSLNAFPVDRENPGPSTLKRPINLLK
                     DNKTVGIFPTGSRTSQEGAPLKRGASTIAMLSKSPILPVAYVGPTKIHGLLTGQAYIN
                     IGKPIDINDLPKDLKRNERIDYITKEIETRTAKLQQELHEIVKSL"
     gene            4168..5634
                     /locus_tag="PF788_000685"
     CDS             4168..5634
                     /locus_tag="PF788_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDG6302963.1"
                     /translation="MYKFFQNLGRSLMLPVAILPAAAIIAGIGNTLNALHATPKIAMF
                     FTTVGTTILEQLGILFAIGVAIGMAKKNDGVVALAATLGYFLVTVVLSPMKLAPLLGM
                     KASEINSAFEKMNNGNVFVGIVIGLIAAYAYNKFSETELPLALSFFSGKRLVPIMTAF
                     YCTFLVVILLFLWPLLYSWIVKFGESIVGLGSFGAFIYGVANRLLIPTGLHHALNSVF
                     WFDTIGINDIGKFQSGKDAIKGITGRYQAGFFPIMMFGIPAAALAMYHTAKTTQKKQV
                     YGWFLASSVAAFFVGVTEPIEFAFMFVAPILYVVHALLTGLSLFIAATFHWTAGFSFS
                     AGLIDYVLSLINPVSNHPLMLLVQGVVFFILYYVIFRVVIQVFNLNTIGRGENELVDP
                     TVVKDNIAPGENDIKQSKYHQHAIQILEGLGGQENIVNLTNCATRLRLELKDTSIIDK
                     QKIKNAGAVGVTVNGKHSTQVIVGTHVQQVADEIEKHL"
     gene            5741..6871
                     /locus_tag="PF788_000686"
     CDS             5741..6871
                     /locus_tag="PF788_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDG6302964.1"
                     /translation="MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDW
                     ETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDMLFIVFSIHLIDILKKLSHDEIE
                     AFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELH
                     VSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVD
                     EVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENMY
                     PQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKI
                     GATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNL"
     gene            complement(6832..6927)
                     /locus_tag="PF788_000687"
     CDS             complement(6832..6927)
                     /locus_tag="PF788_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302965.1"
                     /translation="MKPLVQSFTTSYAVKQQSNYKLSSTPLSSPK"
     gene            complement(7021..8625)
                     /locus_tag="PF788_000688"
     CDS             complement(7021..8625)
                     /locus_tag="PF788_000688"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDG6302966.1"
                     /translation="MKQFNVLVADPISKDGIKALLDHEQFNVDIQTGLSEEALIKIIP
                     SYHALIVRSQTTVTENIINAADSLKVIARAGVGVDNINIDAATLKGILVINAPDGNTI
                     SATEHTLAMLLSMARNIPQAHQSLTNKEWNRNAFKGTELYHKTLGVIGAGRIGLGVAK
                     RAQSFGMKILAFDPYLTDEKAKSLSITKATVDEIAQHSDFVTLHTPLTPKTKGLINAV
                     FFAKAKPSLQIINVARGGIIDEKALIKALDEGQISRAAIDVFEHEPATDSPLVAHDKI
                     IVTPHLGASTVEAQEKVAISVSNEIIEILIDGTVTHAVNAPKMDLSNIDDTVKSFINL
                     SQTVGELAIQLMYNAPSSIKITYGGDLASIDSSLLTRTIITHILKDDLGPEVNIINAL
                     MLLNQQQVTLNIENNKAETGFSNYLEVELSNDSDSVKVGASVFTGFGPRIVRINNFSV
                     DLKPNQYQIVSYHNDTPGMVGKTGALLGKYNINIASMTLGRTEAGGDALMILSVDQPV
                     SNNIIDELKQVGEYNQIFTTELTVQS"
     gene            complement(8612..9772)
                     /locus_tag="PF788_000689"
     CDS             complement(8612..9772)
                     /locus_tag="PF788_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDG6302967.1"
                     /translation="MYYHQPLLLTPGPTPVPDAIMREIQAPMVGHRSKDFEDIAQQAF
                     QGLKPIFGSQNDVLILTSSGTSVLEASMLNIVNPEDHFVVIVSGAFGNRFKQIAQTYY
                     KNVHIYDVTWGEAVDVKDFINFLSTLNVEVKAVFSQYCETSTTVLHPIHELGNAINQF
                     NSNIYFVVDGVSCIGAVDVDINKDKIDVLVSGSQKAIMLPPGLAFVAYSHRAKEHFKE
                     VTTPKFYLDLNKYISSQADNSTPFTPNVSLFRGVNAYVETVKAEGFNHVIARHYAIRN
                     ALRSALKALDLTLLVNDKDASPTVTAFKPNTNDEVKIIKDELKNRFKITIAGGQGHLK
                     GQILRIGHMGKISPFDILSVVSALEIILTEHRKVNYIGKGISKYMEVIHEAI"
     gene            complement(9886..10332)
                     /locus_tag="PF788_000690"
     CDS             complement(9886..10332)
                     /locus_tag="PF788_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HDG6302968.1"
                     /translation="MHQHDFKVQTSWQGGRNNVGNVQGDILSENISIPASLGGVGIGT
                     NPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGTACLNNGKFSMSKIVHHPQI
                     QIPSDQIAQLEKRLPKLITIADNNCMISNAVRNNVDIKIYPIIQAK"
     gene            10412..11155
                     /locus_tag="PF788_000691"
     CDS             10412..11155
                     /locus_tag="PF788_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDG6302969.1"
                     /translation="MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEID
                     VHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDE
                     VLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNT
                     LGSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPY
                     TVNKLKTGEKLRQMGVDGLITDNPKLFIK"
     gene            complement(11371..11973)
                     /gene="rpsD"
                     /locus_tag="PF788_000692"
     CDS             complement(11371..11973)
                     /gene="rpsD"
                     /locus_tag="PF788_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDG6302970.1"
                     /translation="MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKL
                     SEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLG
                     LARTRRQARQLVNHGHILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNF
                     VPEYLNFDADSLTGTFVRLPERSELPAEINEQLIVEYYSR"
     gene            complement(12217..12681)
                     /locus_tag="PF788_000693"
     CDS             complement(12217..12681)
                     /locus_tag="PF788_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HDG6302971.1"
                     /translation="MTTINPTNYTLLKKQAASLIEDEHHMIAILSNMSALLNDNLDQI
                     NWVGFYLLEQNELILGPFQGHPACVHIPIGKGVCGTAVSERRTQIVADVHQFEGHIAC
                     DANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQLA"
     gene            12818..14512
                     /gene="ezrA"
                     /locus_tag="PF788_000694"
     CDS             12818..14512
                     /gene="ezrA"
                     /locus_tag="PF788_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HDG6302972.1"
                     /translation="MVLYIILAIIVIILIAVGVLFYLRSNKRQIIEKAIERKNEIETL
                     PFDQNLAQLSKLNLKGETKTKYDAMKKDNVESTNKYLAPVEEKIHNAEALLDKFSFNA
                     SQSEIDDANELMDSYEQSYQQQLEDVNEIIALYKDNDELYDKCKVDYREMKRDVLANR
                     HQFGEAASLLETEIEKFEPRLEQYEVLKADGNYVQAHNHIAALNEQMKQLRSYMEEIP
                     ELIRETQKELPGQFQDLKYGCRDLKVEGYDLDHVKVDSTLQSLKTELSFVEPLISRLE
                     LEEANDKLANINDKLDDMYDLIEHEVKAKNDVEETKDIITDNLFKAKDMNYTLQTEIE
                     YVRENYYINESDAQSVRQFENEIQSLISVYDDILKEMSKSAVRYSEVQDNLQYLEDHV
                     TVINDKQEKLQNHLIQLREDEAEAEDNLLRVQSKKEEVYRRLLASNLTSVPERFIIMK
                     NEIDHEVRDVNEQFSERPIHVKQLKDKVSKIVIQMNTFEDEANDVLVNAVYAEKLIQY
                     GNRYRKDYSNVDKSLNEAERLFKNNRYKRAIEIAEQALESVEPGVTKHIEEEVIKQ"
     gene            complement(14586..14726)
                     /locus_tag="PF788_000695"
     CDS             complement(14586..14726)
                     /locus_tag="PF788_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302973.1"
                     /translation="MIMLFSLLILIKTTHLITFIFKQLLFIFIVPFIYPYKKEARQRI
                     VG"
     gene            14875..16023
                     /locus_tag="PF788_000696"
     CDS             14875..16023
                     /locus_tag="PF788_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDG6302974.1"
                     /translation="MFILIYLDNAATTKAFEEVLDTYLKVNQSMYYNPNSPHKAGLQA
                     NQLLQQAKTQINAMINSKTNYDVVFTSGATESNNLALKGIAYRKFDTAKEIITSVLEH
                     PSVLEVVRYLEAHEGFKVKYVDVKKDGSINLEHFKELMSDKVGLVTCMYVNNVTGQIQ
                     PIPQMAKVIKNYPKAHFHVDAVQAFGKISMDLNNIDSISLSGHKFNGLKGQGVLLVNH
                     IQNVEPTVHGGGQEYGVRSGTVNLPNDIAMVKAMKIANENFEALNAFVTELNNDVRQF
                     LNKYHGVYINSSTSGSPFVLNISFPGVKGEVLVNAFSKYDIMISTTSACSSKRNKLNE
                     VLAAMGLSDKSIEGSIRLSFGATTTKEDIARFKEIFIIIYEEIKELLK"
     gene            16023..17246
                     /gene="thiI"
                     /locus_tag="PF788_000697"
     CDS             16023..17246
                     /gene="thiI"
                     /locus_tag="PF788_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDG6302975.1"
                     /translation="MKYDHLLVRYGELTLKGSNRKKFVNQLRNNVNKSLKGLDGFVVK
                     GKRDRMYIELEDHADINEITYRLSKIFGIKSISPVLKVEKTIEAISAAAIKFAQQFEE
                     NSTFKIDVKRADKNFPMDTYELQRELGGAVLKHFDNISVNVKRPDHEIRVEVRLDAIY
                     MYEEVVPGSGGLPVGTGGKTLLMLSGGIDSPVAGMEVMRRGVTIEAIHFHSPPFTSDQ
                     AKEKVIELTRILAERVGPIKLHIVPFTELQKQVNKVVHPRYTMTSTRRMMMRVADKLV
                     HQIGALAIVNGENLGQVASQTLHSMYAINNVTSTPVLRPLLTYDKEEIIIKSKEIGTF
                     ETSIQPFEDCCTIFTPKNPVTEPNFDKVVQYESVFDFEEMINRAVENIETLEITSDYK
                     TIKEQQTNQLINDFL"
     gene            17290..18060
                     /locus_tag="PF788_000698"
     CDS             17290..18060
                     /locus_tag="PF788_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDG6302976.1"
                     /translation="MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPS
                     VALGTNKLASSFGSLTSTIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQIL
                     KPLIIIALSSVFIFTLLKKDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGS
                     FMLFVLLVFGFDFLSAAGNAKVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSY
                     AGAHFAIKQGVGYVKVLFIIITAILILKNAFDYIQQFV"
     gene            18158..18652
                     /gene="tpx"
                     /locus_tag="PF788_000699"
     CDS             18158..18652
                     /gene="tpx"
                     /locus_tag="PF788_000699"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDG6302977.1"
                     /translation="MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAG
                     KKKLISVVPSIDTGVCDQQTRKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVI
                     TLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAA
                     YKNI"
     gene            18775..19722
                     /locus_tag="PF788_000700"
     CDS             18775..19722
                     /locus_tag="PF788_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDG6302978.1"
                     /translation="MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTN
                     ERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEE
                     LHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQD
                     AIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINALKDAG
                     YAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSG
                     ETKPVEVLLANIPDFKIPSQFQGFMTELNQWMDTNRPKK"
     gene            19810..21012
                     /locus_tag="PF788_000701"
     CDS             19810..21012
                     /locus_tag="PF788_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDG6302979.1"
                     /translation="MSKLILAINAGSSSLKFQLIRMPEEELVTKGLVERIGLKDSIFT
                     IEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESV
                     AITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYL
                     YSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAID
                     GGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGL
                     SGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGEN
                     SVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARD
                     VMTFGGLK"
     gene            complement(21258..21758)
                     /locus_tag="PF788_000702"
     CDS             complement(21258..21758)
                     /locus_tag="PF788_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDG6302980.1"
                     /translation="MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSR
                     TYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAH
                     EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQL
                     REKYQN"
     gene            21899..23017
                     /gene="ald"
                     /locus_tag="PF788_000703"
     CDS             21899..23017
                     /gene="ald"
                     /locus_tag="PF788_000703"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HDG6302981.1"
                     /translation="MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSF
                     FEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKL
                     TQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLG
                     GVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIM
                     SNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFET
                     TDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFK
                     SNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL"
     gene            23141..23239
                     /locus_tag="PF788_000704"
     CDS             23141..23239
                     /locus_tag="PF788_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6302982.1"
                     /translation="MNDIDLIHYMLLMNIPAYVFLACLLHIAFRLG"
     gene            complement(23333..24388)
                     /locus_tag="PF788_000705"
     CDS             complement(23333..24388)
                     /locus_tag="PF788_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDG6302983.1"
                     /translation="MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFAL
                     LIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTV
                     ARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEG
                     VTECEVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGV
                     IYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIIS
                     EKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIED
                     DILVTNEGYEVLTHYEK"
     gene            24563..25252
                     /locus_tag="PF788_000706"
     CDS             24563..25252
                     /locus_tag="PF788_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDG6302984.1"
                     /translation="MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYI
                     VLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGS
                     VKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPV
                     DVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDV
                     QILKPGESVQF"
     gene            complement(25557..25970)
                     /locus_tag="PF788_000707"
     CDS             complement(25557..25970)
                     /locus_tag="PF788_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDG6302985.1"
                     /translation="MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQ
                     ASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEI
                     VVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK"
     gene            26175..27473
                     /locus_tag="PF788_000708"
     CDS             26175..27473
                     /locus_tag="PF788_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HDG6302986.1"
                     /translation="MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDAD
                     KMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGA
                     MELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPV
                     LSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANR
                     TGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMI
                     WEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGIT
                     VEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHI
                     TVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV"
     gene            27734..28675
                     /gene="pde2"
                     /locus_tag="PF788_000709"
     CDS             27734..28675
                     /gene="pde2"
                     /locus_tag="PF788_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pApA hydrolase Pde2"
                     /protein_id="HDG6302987.1"
                     /translation="MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQK
                     FPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLI
                     KIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTG
                     RFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFC
                     QVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGNEIRCRLRSKGQLIIN
                     DIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN"
     gene            28696..31893
                     /locus_tag="PF788_000710"
     CDS             28696..31893
                     /locus_tag="PF788_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDG6302988.1"
                     /translation="MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLY
                     GFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLAKNNDGLKDLYQLSSEIKMNAL
                     EHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGRKHVWIQN
                     VCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEINQLDINQEYLTQVDV
                     IAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYK
                     VITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLF
                     ERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVG
                     RIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLP
                     RHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSII
                     HQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEH
                     FEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQ
                     IASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILK
                     FADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQG
                     ITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFAR
                     RIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPK
                     QMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNYKPILVQ
                     FDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHR
                     KQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVVLSFY
                     DETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI"
BASE COUNT        10924 a         4624 c         5817 g        10632 t
ORIGIN      
        1 tgatctaata attcatcgcc aggtatttgt cgaacttttt ttattaaagc atcatctgat
       61 aatgagtcgg acgttttagt taaatgatga aaatataaag acatcgcaat cacagcgata
      121 gcaacgatgg caatgaaaat cataaatata aaaacaatga catgtttgat agctttatat
      181 atcttttcaa aatgatatat acgatgattc aattgatgat tgttgtcttg attcgtcatc
      241 tttaacctcc taaattacgt atagtatacc atatttaagc aatttgactt ttattttaac
      301 gttaattata attagggaaa atgcataaag aataggataa aaggacaagt aatattattt
      361 gaaatcatca gagagctagt ggtcgctgtg aactagtgtt tttaataata tgaatacacc
      421 tttataacta acatgtccta cgtttattaa tgaacgtatc attaatagag tgaacattat
      481 cttatgatta tgtttaagtt tggtggtaac gtgcaatcgc gcccttacat atttgttgta
      541 agggtttttt ttacgttcaa aaaactttaa agtattttaa caagtattca ataaataatt
      601 ataaatagga ggaaataata atgacgaatg tattaattga agatttaaaa tggagaggtc
      661 ttatttatca acaaactgat gaacaaggta ttgaagattt attaaataaa gaacaagtga
      721 cgttatactg cggtgccgat ccaacggcag atagtttaca tattggtcac ttactaccat
      781 tcttaacatt aagacgtttt caagaacatg gacatcgtcc tatcgtttta attggcggtg
      841 gtacaggtat gattggtgat ccatcaggta aatcagaaga acgtgtgcta caaacagaag
      901 aacaagtaga taaaaatatc gaaggtatta gtaagcaaat gcacaatatt tttgaatttg
      961 gaacagacca tggtgcagtg cttgttaata atagagactg gttaggacaa atctcattaa
     1021 ttagtttttt acgtgactat ggtaaacacg tcggcgttaa ttacatgtta ggtaaagatt
     1081 caatccaaag tcgtttagaa catggtattt catatacaga attcacatac acgattttac
     1141 aagctattga tttcggtcat ttgaatagag aattgaattg taagattcaa gtaggtggat
     1201 cagatcaatg gggtaatatc acaagtggta ttgaattaat gcgtcgtatg tatggtcaaa
     1261 cagacgcata cggtttaact attccgcttg taactaaatc agatggtaag aaatttggta
     1321 agtctgagtc aggtgctgtt tggttagatg ctgaaaaaac aagtccttat gaattttatc
     1381 aattctggat taatcaatca gacgaagatg taattaaatt cttaaaatac tttactttct
     1441 taggaaaaga agaaattgat cgcttagaac aatctaaaaa tgaagcaccg catttacgtg
     1501 aagctcaaaa aacattagct gaagaagtaa ctaaatttat tcatggtgaa gatgcattaa
     1561 atgatgcaat ccgtatttca caagcattat ttagtggtga tttaaaatca ttatcagcga
     1621 aagaattaaa agatggattt aaagatgtgc ctcaagtgac attatcaaat gacacaacaa
     1681 atatcgttga agtccttatt gaaacaggca tttctccttc taaacgacaa gcacgtgaag
     1741 atgttaacaa tggtgcgatt tatattaatg gtgagagaca acaagatgtt aattatgctt
     1801 tagcaccaga agataaaatt gatggcgaat ttacgattat tcgtcgcggt aagaaaaaat
     1861 acttcatggt taactatcaa taaatataat tgcatagcta aataaattag agcctactca
     1921 tattcattcc taagaatgta atgagtaggc tcttaatgta cttttctgtc tgtaaattat
     1981 ctaaagaaat ctctatcgcc ttggccaggt gattgacgtt ctgatcggct ttgacgtttt
     2041 ggttgttctt tttgttgttt taatttcact ttaacttctt ttgttttacc atcacggata
     2101 acggtaacag tgactgattc accaggtttt ttattttcat ataaatagct tcttaaatca
     2161 acatcatctt taattttctt gccatcaatt tctgtaataa tatcaccttt tttaagatca
     2221 atatcactat cagctttggc gacataaata ccgtcttctc tatcagtatg aagttgctcg
     2281 cgctcttctt caggaatatc tttcaaatta attaaaccaa taccaatcga agggcggtca
     2341 attttaccat gttttacaag ttgttcaatt gttactttaa cttcattact tggaatagca
     2401 aacccgatac cttcaacttg tgtcgcagca attttcattg agttaatacc aactaaatta
     2461 ccattaatat ctactaatgc gccacctgag ttacctgggt taatagcagc atctgtttga
     2521 agaacgctaa cttttgtatt gccaccagtt gtctcagcgt caatcgtacg ttcgcttgct
     2581 gaaatgatac cagatgttac agagttagca aattgtaatc ctaatgggtt acccattgcg
     2641 aatacgctat cgccagtttg tacttttgaa gagttggcaa attgaatcgc tttaatacct
     2701 tttgtatttt caattttaag tacagcaata tcagttactg catctttacc aactaatttc
     2761 gctttaactt gttttttatt atgtaattgg actctaattt catttgcgcc atcaataaca
     2821 tgattgtttg taacgatata agctgaattg ttgtttattt gatagataac acctgaacct
     2881 actccagctt cagatggttt agatgatttg ccttttaata agtcgtctac acttgatgct
     2941 ttttgcatgt taataactcc aacaattgta ggggagacag attttatcat ttcatgaacg
     3001 gtaccgaatt tcttgctttg accgtctaat tgattgccac ctttattatt tgttgtctga
     3061 acagttgaac catctttatt taaaattgta ctatttaata ctttgcctat accaagtact
     3121 agaagtgcac caataattcc agcaatcaat gcaacgatga ctgttttaaa ccatggaaat
     3181 ttaggtcttc tgtatctagg tgtttggcta tggtttgttg tagaatgatc tgtatgatta
     3241 aaatctgaca tacttaacct ccattatatg atttatatat gctttaatta tgtctttttt
     3301 ttataattat tgctagtaat acactataca actttagatg tattttcaga ctatcttgtt
     3361 ctagtaaaaa tatagtgata aaatctagtt gttataaaca aataagttaa gtaggtggca
     3421 caatgtattc agtgattagt aagattttga atttcatttt agttaaaatg tcaaaatcat
     3481 tatacgtaat cggtaaagat aatattccta aggatagtaa atatgtcgta acttgtacgc
     3541 atgaaagtta taacgaagtc attatgctag gtatggcatt atatcctaat caaattcatt
     3601 atatggctaa aaaagaatta ttcaaaaata aatggattgg taaattttta acgtctttaa
     3661 atgcatttcc tgtagatcgt gaaaatccag gacctagtac tttaaaacgc ccaatcaatt
     3721 tgttgaaaga taataagaca gttggtatct tcccaacagg ttctcgcaca tcgcaagaag
     3781 gtgcaccttt gaaacgtggt gcttcaacaa ttgcaatgtt aagtaagtca ccaatattac
     3841 ctgttgctta tgttggtcct actaagattc acggtctttt aacaggacaa gcatacataa
     3901 atattggcaa accaatcgat attaacgatt tacctaaaga tttaaaacga aacgagcgta
     3961 tcgattatat tacaaaagag attgaaacac gaacagcaaa gttacaacaa gaattgcatg
     4021 aaattgtaaa aagtttataa aataacttga ggtagaaata tagctggtta gtaagcctag
     4081 gtgactataa cggagtatcg aagtagttat tctagttaca ttagtaatct ttatatttct
     4141 acattatttt aagaaggatg acattcaatg tataaatttt tccaaaattt agggcgttcg
     4201 ttaatgttac cagttgccat tttaccggct gcagcaatta ttgccggaat tggtaatacg
     4261 ttaaatgcac ttcatgcgac gccgaaaatc gcaatgttct ttactacggt aggtactacg
     4321 attttagagc aattaggtat tttatttgca attggtgtag ctataggaat ggcaaagaaa
     4381 aatgatggtg tagtcgcgct tgcagctacg ttaggatatt ttttagttac agttgtatta
     4441 tcaccaatga aattagcgcc tttattagga atgaaagctt cggaaataaa ttcagctttt
     4501 gaaaagatga ataatggcaa tgtctttgtt ggtattgtaa taggtttaat agcagcttat
     4561 gcatacaata agtttagtga aacagaatta ccattagcat tatcattttt tagtggtaaa
     4621 cgtctagttc caattatgac tgcattttac tgtacatttt tagttgtcat attgttattc
     4681 ttatggccac tactttattc atggattgta aaatttggtg aatctatagt cggtttagga
     4741 tcgtttggag ctttcatata tggtgttgcc aatagattat taattcctac aggattacat
     4801 catgcactga atagtgtgtt ctggtttgat acgattggta ttaatgatat tggtaaattc
     4861 caaagtggca aagatgctat aaaaggtatt acaggacgct atcaagcggg attcttccca
     4921 atcatgatgt tcggtattcc agcggctgcg ttagcaatgt atcatacagc taaaactact
     4981 cagaaaaaac aagtttacgg ttggttccta gcgagttcag ttgcagcatt tttcgttggt
     5041 gttacagagc cgattgagtt tgcatttatg tttgttgcgc caatcttata tgttgttcat
     5101 gcgttattaa caggattatc tttatttatc gcagctacat tccattggac agctggattt
     5161 tcatttagtg caggtttgat agattatgtg ttatcactaa ttaatccagt atcaaatcat
     5221 ccattgatgt tgcttgttca aggtgttgta tttttcatct tatactatgt gattttccgt
     5281 gtagtaatcc aagtatttaa cttgaatacg attggtagag gtgaaaatga attagttgac
     5341 ccaacagttg taaaagataa tattgctcct ggtgaaaatg atattaaaca aagtaaatat
     5401 catcaacatg ctatacaaat attagaaggt ttaggcggtc aagagaatat tgttaattta
     5461 accaattgtg caacaaggtt gcgtctagag ttaaaagaca catctattat tgataaacag
     5521 aagattaaaa acgccggtgc agttggtgtt actgttaatg gcaaacattc aactcaagtt
     5581 attgtcggta cacacgtaca gcaggttgct gatgaaattg aaaaacattt ataaaattta
     5641 aacagctaaa gcgcaaatct aacttcaata gggtttgcgc tttttttagt caaatagtag
     5701 aatgatttat atctgaattt tcagaaatgg agtggggatt gtgaagaaaa ttttatttga
     5761 tgttgatggc gtttttttaa gtgaagaacg ttgtttcgat gtctctgcat taacggtata
     5821 tgaattatta atggataagt gttatttagg tcttcattca catatagatt gggaaacttt
     5881 gactgataac gatatacaag acattaggaa tcgaattttt caaaaagata agattttaaa
     5941 caaattaaaa tcgctagggc tgaattcaaa ttgggatatg ttatttatcg tttttagtat
     6001 tcatttaatt gatattttga aaaagttatc acatgatgaa attgaggcat tcatgtatca
     6061 agatgagcct gtcgaattga agttgcaaaa tataagcaca aacttagcag actgttttaa
     6121 tttaaatgaa caactacctt tacaattttt ggataatgta aaagttggta aaaataatat
     6181 ttatgctgct ttggaagagt ttgcaacaac agagttacat gtttcggatg ctactttatt
     6241 tagtttgaag ggtgcattat ggacgttagc gcaagaagtt tatcaagaat ggtatttagg
     6301 atcgaagttg tatgaagatg ttgaaaagaa aatagcacga actactttta agacaggtta
     6361 tatttatcaa gaaattattt tgagaccagt agatgaagtt aaggtacttc tgaatgattt
     6421 aaaaggtgct ggtttcgaat taggtattgc aacaggtcgt ccttatactg agactgttgt
     6481 gccatttgaa aatttaggat tgttaccata ttttgaagct gattttattg caacagcaag
     6541 tgatgtttta gaagcagaga atatgtatcc gcaagcacga ccattaggaa agccgaatcc
     6601 ttttagttat atcgcagctt tatatggtaa taatcgcgat aaatatgaat cttatatcaa
     6661 taagcaagat aacattgtaa ataaagatga cgtatttata gtaggcgatt cgttagctga
     6721 cttattaagt gctcaaaaaa taggtgcaac gtttattgga acattaacag gtttaaaagg
     6781 taaggatgct gcaggtgagt tagaagcgca tcatgccgac tatgttatta atcatttagg
     6841 tgaacttaga ggtgtactag ataatttgta atttgattgt tgtttgacag cataacttgt
     6901 agtgaatgat tgaaccaaag gtttcatatt gagttacaat gaaattaata atgaaaaaat
     6961 gccaagaagc aatggaagta atccaatgtc ttcttggcat tttgaattta cataaattgt
     7021 ttatgactgt accgtcaatt cagttgtgaa aatttgattg tattcaccaa cttgtttaag
     7081 ttcatcaatt atattgtttg aaacaggttg atcaacggat aaaatcatta gcgcatctcc
     7141 gcccgcttca gttctaccta aagtcataga tgcaatgttg atattgtatt tacctaacaa
     7201 tgcgccagtt tttcctacca tacctggagt atcattatga tatgacacaa tttgatattg
     7261 atttggcttt aagtctacag aaaaattatt aattctaaca attcttggac cgaaacctgt
     7321 aaagacagaa gcgccaactt taacggaatc gctatcgttt gatagttcta cctctaagta
     7381 gttactaaaa cctgtctctg ctttattatt ttcaatattt aatgtcactt gttgttgatt
     7441 taacaacatt agagcattga taatattgac ttcaggacca agatcatctt ttaaaatatg
     7501 agtaataatt gtacgtgtta ataaactact atcaatagag gctaagtcgc caccgtacgt
     7561 aattttaata gagcttggtg cattgtacat taattgaata gctaattcac caactgtttg
     7621 gcttaaattg atgaatgatt ttacagtatc atctatattg cttaagtcca ttttaggtgc
     7681 attcactgca tgcgttacag taccatcaat taaaatttcg atgatttcat ttgaaacaga
     7741 aattgccact ttttcttgag cttcgactgt tgaagcaccc aaatgaggtg taacaataat
     7801 tttatcatgt gcaacaagag gcgagtcagt tgcaggttca tgttcaaaca catcgatagc
     7861 tgcccgacta atttgtcctt cgtctaatgc ttttattagc gccttttcat caataatacc
     7921 accacgtgcc acattgatta tttgcaaact aggttttgct ttggcaaaaa agacagcatt
     7981 aattaagcct tttgttttag gtgttagtgg tgtatgtaat gtaacgaaat cagaatgttg
     8041 ggcaatctca tcaactgttg ccttcgtaat gcttaaagat tttgcttttt catccgttaa
     8101 gtaagggtca aaagctagta ttttcattcc gaaactttgc gcacgtttag caacacctaa
     8161 accaattcta ccagcaccaa tgacacctaa tgttttatga taaagctcag tacctttaaa
     8221 tgcatttcga ttccattctt tatttgtaag tgattggtgt gcttgcggaa tatttcgtgc
     8281 cattgataat aacattgcca gtgtatgttc agtagctgaa atcgtattac catctggggc
     8341 attaataact aaaatacctt ttaatgttgc agcatcaata ttaatattat ctacaccaac
     8401 accggcgcgt gcgattactt ttaaagaatc agcagcattt atgatatttt cagtaaccgt
     8461 agtttgacta cgaacgatta aagcatggta tgaaggtata attttgatta atgcttcttc
     8521 ggacaagcca gtttgaatat ctacattgaa ttgttcgtga tctaataatg ctttgatacc
     8581 atcttttgat atgggatctg caacgagtac attaaattgc ttcatgaata acctccatat
     8641 attttgatat acctttaccg atatagttaa ctttacggtg ttcagttaaa ataatttcta
     8701 aagcagatac taccgataaa atatcgaaag gactaatttt ccccatatga ccaattctta
     8761 aaatttgacc tttaagatgg ccttgaccac cagcaattgt tattttaaag cgatttttaa
     8821 gttcatcttt gattattttc acttcatcat ttgtattagg tttgaatgct gtaaccgttg
     8881 gagatgcatc tttatcattg actaataaag ttaaatctaa tgcttttaag gcgcttctta
     8941 atgcatttct aattgcatag tgtcgtgcta ttacgtgatt gaaaccttct gcttttacgg
     9001 tttcaacgta tgcatttaca cctctaaata aagacacatt tggtgtgaac ggtgtagaat
     9061 tgtcagcttg tgacgaaatg tatttattta agtctagata aaattttggc gtagttactt
     9121 ctttgaaatg ttcttttgca cggtggctat aagctacaaa agctaatcct ggaggtaaca
     9181 taattgcttt ttgactacca gaaacaagta catcaatttt atctttgtta atgtcaacat
     9241 caacagcacc aatgcaactt acgccgtcaa ctacaaaata aatattacta ttaaattgat
     9301 taatggcatt tcctaactcg tgaatagggt gtagcactgt cgtagatgtt tcgcaatatt
     9361 gactaaatac tgctttaact tcaacattta aagttgaaag gaaattgatg aaatctttga
     9421 catctacagc ttctccccat gttacgtcat aaatatgcac atttttgtaa taagtttgtg
     9481 caatttgttt aaatcggtta ccaaaggcac ctgaaacaat gacaacgaag tgatcttcag
     9541 ggtttacaat gttcaacata ctagcctcca agacgcttgt accgctagat gttaaaataa
     9601 gtacatcatt ttgactccca aatattggct ttagaccttg aaatgcttgt tgtgcgatgt
     9661 cttcaaaatc tttagaacga tgaccaacca taggtgcttg aatttctctc ataatggcat
     9721 caggtacagg ggttgggcca ggtgttaata acaacggttg atgataatac atttatatgc
     9781 ctcctataaa taagatttca ctattttagc aaattttctg aaaatttaaa agcctaaaaa
     9841 agtgataacg ctatattgtc gaacaaacgt tatcacttaa cgattttatt tggcctgaat
     9901 gatgggatag atttttatgt ccacattatt tcttacagca tttgaaatca tgcaattatt
     9961 atctgcaatt gttatcaatt ttggtaatcg cttttctaat tgtgctattt gatcacttgg
    10021 aatttgaatt tgaggatggt gcacaatttt tgacatactg aattttccgt tatttaaaca
    10081 agctgttcca atcgattgtt gttcaattga aatatctgtg aactttgcac gttcaagagt
    10141 agctgctaat gagatgatat aacatgatga agcggctgat actaacattt catcgggatt
    10201 tgttcctata ccaacaccac ctaaagaagc aggtatagaa atattctctg aaagtatgtc
    10261 gccttgaacg tttccgacat tgttacgacc accttgccaa gaagtttgga ctttaaagtc
    10321 atgttgatgc aattgcttta acctccaata taattgtgat agtttaattt tagaatagtt
    10381 tatcaaagtt taacagaaag gtgacttatc aatgactctg aataaactga aagatgaatt
    10441 acaaattgtt tcgcaccgtg gattgccgag tgattttcct gaaaatacaa tggtcggtta
    10501 tcgagaggta atggggctca atgttgctat gttagaaata gatgttcatt tgaccaaaga
    10561 ccaacatttt gttgtgatac atgatgaaac aattgataga acatcggatg gtaaggggcg
    10621 tattgctgat tacacattat cgcaattaaa atcatttgat tttggtagtt ataaagatgt
    10681 tgcttttaag ggagaacgaa tacccacgtt agatgaagta ctttcattat gcttaaagta
    10741 tgataaaaag ctattgattg aattgaaaag tccgaattta tatccagaaa tagaatgtaa
    10801 attgctggca tttttggaag aaaagaaagt cgatgcgaca caagtagtta tacaatcttt
    10861 tgatatcgaa tgcatcgaaa agttaaacac attgggcagt atatatgaat taggtgtgct
    10921 ttgtagtaaa cgtaattatt ggtataaaaa gccaaacttt tcaagaattg ctcaaattgc
    10981 tagttatgtt aatcctaatt atgcattagt gaccagaaaa tttgttgata aagcacatca
    11041 tcatcaatta caggttatgc catacacagt taataaattg aaaactggag aaaaattaag
    11101 acaaatgggt gtagatggat taattacaga taatccgaaa ttatttatta agtgagacga
    11161 tgaatggtaa tttgatagag ggatgaggat tcgtatatcg caattgataa ttttaaaaac
    11221 taatgatgaa atactaaaga taattaaaca aataagactt gtaaattcta agttgattgt
    11281 aaaatagggt agctccatat aattttgaat ctatcatttt taaattaata aaaaaaacac
    11341 ccacaattgt gggtgtttgt attgaacgta ttatcttgag tagtactcaa cgattaattg
    11401 ttcgttaatt tcagcaggta attcgctacg ttctggtaaa cgtacgaaag taccagttaa
    11461 gctgtcagca tcaaagttta agtactcagg tacgaaattg ttgatttcaa ctgattcaac
    11521 gatgatgttt aatttttgag atttttcacg aactgaaatt gtttgaccag gtttaacaga
    11581 ataagatgga atatcaacac gtttaccatc tactaagata tgaccgtggt taactaattg
    11641 acgtgcttga cgacgagtac gagctaaacc taatgaataa acaacagcgt ctaaacgact
    11701 tgctaataag atcatgaagt tttcaccgtg tacaccgaat tttttaccag cgatgtcaaa
    11761 tgtgttacgg aattgtcttt cagtcattcc atataagtaa cgtaattttt gtttttcacg
    11821 taattgtaaa ccatattctg ataatttttt acgttggttt ggaccatgtt gtcctggtgc
    11881 gtaaggacgt ttttctaatt ctttaccagt accgcttaaa gagataccta aacgacgaga
    11941 ttttttccag tttgaacctc tgaatcgagc cataataaga ctcctccttt aattcttttt
    12001 tgttgttatg aataaacaaa aaagagtgtt gcatgcttac taagatatat tgttttatgt
    12061 gtcttcacct tatagcgaca gttacgtgac acgtccgcat tgggaacaac atagcgctca
    12121 ataatataca actgctactt tcgttaattc acacaaagat tattgtaaca ttttcctgct
    12181 aactgtcaac actttattga aaatgctgat gtccttttat gcgagttgct tttcaataat
    12241 tttaacaatt gcttcaagat gttctttgtc attgtcatca aatcgatccg ttataggggc
    12301 atcgatatct aagacgccga taattttatc atctttgaaa attggaacga caatctcaga
    12361 cttactatta gcatcacaag cgatatgtcc ttcgaattga tgaacatcag ctacaatttg
    12421 tgtacgacgt tctgaaacgg ctgtaccaca tacacctttt ccaattggaa tgtggacaca
    12481 agcggggtgt ccttggaaag gtccaagtat aagttcattt tgttccaata agtaaaagcc
    12541 aacccaatta atttgatcta gattatcatt taataaggca gacatgttac ttaaaatagc
    12601 aatcatgtga tgttcatctt caataaggct tgctgcttgt ttctttaata atgtgtagtt
    12661 tgttgggtta attgttgtca tatttaaaac ctcttatttt catagatttt ataatagtat
    12721 agaatttcga aaatattatg gcaataaatt cattttataa tttatcctta agcaaaatta
    12781 cgttataata gtaatgataa attaggagga gaagcatatg gtgttatata tcattttggc
    12841 aataattgtg attatattga ttgctgtagg tgtattattc tatttacgtt caaataaacg
    12901 acaaattatt gaaaaagcaa tcgaacgtaa aaatgaaatt gagacgttac cttttgatca
    12961 aaaccttgca caattatcta agttgaattt aaaaggtgaa acaaaaacga aatacgatgc
    13021 aatgaaaaag gacaacgtag aaagtacaaa taagtatcta gctcctgtgg aagaaaaaat
    13081 ccataatgct gaggctttat tagataaatt tagtttcaac gcatctcaaa gtgaaattga
    13141 tgatgcaaat gagttgatgg atagttacga acaaagctat cagcaacaat tagaagatgt
    13201 aaatgaaatt attgcgttat acaaagataa tgatgaatta tatgacaaat gtaaggttga
    13261 ttatcgtgaa atgaaacgtg atgttttagc aaatcgtcat caatttggtg aggcagcaag
    13321 tctacttgaa actgaaattg aaaaatttga gccaaggtta gagcaatatg aagtactaaa
    13381 agctgatggt aattatgtac aagcgcacaa ccatatagct gccttgaatg aacaaatgaa
    13441 acagctaaga tcttatatgg aagaaatacc agaattaatt agagaaactc aaaaagaatt
    13501 acctggtcaa ttccaagatt taaaatatgg ttgccgtgat cttaaagttg aagggtatga
    13561 tctggatcac gtgaaagtag acagtacatt acaaagctta aaaacagagc ttagtttcgt
    13621 tgaaccatta attagccgct tagaattaga agaagctaat gataaactag ctaatatcaa
    13681 tgataagtta gatgacatgt atgatttaat tgaacatgaa gttaaagcta aaaatgatgt
    13741 cgaagaaaca aaagatatca ttacggataa cttattcaaa gctaaagaca tgaattatac
    13801 attgcaaaca gaaattgaat atgtacgtga aaactactat ataaatgaat ctgatgctca
    13861 gagtgttcgt caatttgaaa atgaaattca aagtttaatt tctgtatatg atgatatttt
    13921 aaaagaaatg tctaaatctg ctgtgcgata tagcgaggtt caggataatt tacaatattt
    13981 agaagatcat gtcacagtta ttaatgacaa acaagaaaag ctacaaaatc atctgattca
    14041 attgcgtgaa gatgaagcag aagcagaaga caatctgcta cgagtacaat cgaagaaaga
    14101 agaagtgtat cgtcgattac ttgcttctaa cttaacaagc gttcctgaaa ggtttatcat
    14161 catgaaaaat gaaattgatc atgaagttcg tgatgttaac gaacaattta gtgaacgtcc
    14221 aatacacgtt aaacagttaa aagataaagt gtctaaaatt gtgattcaaa tgaatacatt
    14281 tgaagatgaa gcaaatgatg ttcttgttaa tgctgtttat gcagagaaat taattcaata
    14341 tggaaataga tatcgtaagg actatagcaa tgttgataag agcttaaatg aagctgaacg
    14401 attatttaaa aataatcgct ataagcgtgc gattgaaatt gcagagcaag ctcttgaaag
    14461 tgttgagcca ggtgttacta aacatattga agaagaagtt attaagcaat agaaactagt
    14521 atgtagttat acttaaataa tatgagcact ctgtcaaatt ggactgatga gtttaataat
    14581 tgaagttagc caacgatacg ttgtctagct tcttttttat atggataaat gaaagggaca
    14641 ataaatataa atagcaattg tttaaagata aacgtaatca aatgtgttgt tttaattaat
    14701 ataagtagtg aaaaaagcat aatcacacag ctgtttaaat agagtgaaat agtctaattc
    14761 ttatttaata agtagaaata agattatttt gcgctataac ctttattttt tgtcggataa
    14821 tagtataatg cttgagtaaa acaattttaa cgattgatga ttaatgaaag agaagtgttt
    14881 attttgatat atctagataa tgcggcaacg acgaaagcat ttgaagaagt gttagatact
    14941 tatttaaaag taaatcaatc aatgtattat aatccgaata gtccgcataa agctggtttg
    15001 caggcaaatc aattactaca acaagcaaaa acccaaatta atgcaatgat taattcaaaa
    15061 acaaattatg atgttgtatt cactagtggt gcaactgaat ccaataatct tgctttaaaa
    15121 ggtattgcct atcgtaaatt tgatacagcg aaggaaataa ttacatccgt gttagagcat
    15181 ccgtccgtat tagaggttgt aagatatttg gaagcacacg aaggatttaa agttaaatat
    15241 gttgatgtaa agaaagatgg cagtattaac ttagaacact tcaaagaatt aatgtcagac
    15301 aaagtcggtt tagtaacatg tatgtatgta aataatgtaa ctggacaaat acagcctatt
    15361 ccacaaatgg ctaaagttat aaaaaattat cctaaggcac attttcatgt agatgcggtt
    15421 caagcattcg gcaaaatttc aatggatctc aataacatag atagtattag tttaagtgga
    15481 cacaagttta atggtttaaa aggacaaggc gtcttacttg taaatcacat tcaaaatgtt
    15541 gaaccaactg tccatggtgg tggtcaagaa tatggcgtta gaagtggaac agttaatttg
    15601 ccaaatgata ttgcaatggt taaagcgatg aagatagcta atgaaaactt tgaagcattg
    15661 aatgcatttg ttactgagtt aaataatgac gtccgtcaat ttttaaataa atatcatgga
    15721 gtttatatta attcttcaac ttcaggttca ccattcgttt taaatattag ttttcctggc
    15781 gtaaaaggtg aagtattagt taatgctttt tcaaaatatg acattatgat atctacgaca
    15841 agtgcttgtt catctaaacg taataaatta aatgaagtat tggctgcaat gggattatca
    15901 gacaaatcta ttgaaggtag tataagatta tcatttgggg ctactacaac taaagaagat
    15961 atagcgaggt ttaaagaaat atttatcatc atttatgagg aaattaagga gttgctaaaa
    16021 taatgaagta tgatcacttg cttgttagat acggggagtt aacattaaag ggttcaaata
    16081 gaaagaaatt tgtaaatcaa ttaagaaata atgtaaataa gtcattaaaa ggacttgatg
    16141 ggtttgtcgt taaaggcaaa cgagatcgta tgtatattga acttgaagac catgcagata
    16201 taaatgaaat aacatatcga ttatcaaaaa ttttcggtat taaatctatt agtccagtat
    16261 taaaagtaga aaaaacaata gaggcaataa gtgcagcggc aattaaattt gcgcagcaat
    16321 ttgaagaaaa cagcacattt aaaattgatg tgaagcgtgc cgataaaaat ttcccaatgg
    16381 atacgtatga attacagcgt gaattgggtg gtgcagtatt gaagcacttc gacaatattt
    16441 cagtgaatgt caaacgtcca gatcatgaaa ttcgagtgga agttagatta gatgcaattt
    16501 atatgtatga agaagttgtt ccgggttcag gtggattacc agttggtact ggtggtaaga
    16561 cgttactaat gctttcaggc ggtatagact caccagttgc tgggatggaa gtgatgagac
    16621 gtggcgtaac aattgaagcg attcatttcc atagtccacc atttacaagt gatcaagcaa
    16681 aagaaaaagt tattgaattg acacgtattt tagctgaacg tgttggacca attaaattgc
    16741 atattgtacc atttacagaa ttgcaaaaac aggtaaataa agttgtacat ccaagatata
    16801 caatgacttc aacgagacgt atgatgatgc gtgttgctga taaattagta catcaaatag
    16861 gggctttagc tattgtaaat ggtgaaaacc tagggcaggt agccagtcaa acacttcata
    16921 gcatgtatgc aattaataat gtaacttcta ctcctgtatt acgtccttta ttaacttacg
    16981 ataaagaaga aattattatt aaatcgaaag aaattggtac atttgaaaca tctattcaac
    17041 catttgaaga ttgttgtaca attttcaccc ctaaaaatcc agtaaccgaa ccaaactttg
    17101 ataaggtagt ccaatatgaa agtgtctttg attttgaaga gatgattaat cgtgctgttg
    17161 aaaatattga aacacttgaa ataactagtg attataaaac tattaaagaa cagcaaacaa
    17221 accaattaat aaacgacttt ttataaataa aatcctagag taaatttaaa cataagggga
    17281 tgttaaacta tggatttgaa cttaacgatg attataatca taattttatt tggttttatc
    17341 gcggcgttta tagattcggt tgtagggggt ggcggtttaa tttctacgcc agcattatta
    17401 gcaatcggtc taccaccatc tgtggcttta ggtacaaata aattggcaag ttcgtttggt
    17461 tctttaacta gtacgataaa gtttataagg tccggtaaag tggacttata tgttgttgcc
    17521 aaattatttg gttttgtatt tttggcatct gcatgtggcg catatattgc aacgatggtt
    17581 ccgtcacaaa tattgaaacc tttaatcatc attgcacttt cgtcggtgtt tatattcaca
    17641 ttacttaaaa aagattgggg caatacacgc acgtttactc aatttacatt taagaaagcc
    17701 ataatatttg cagcactttt tatattaatc ggcttttatg atggatttgt aggtggggga
    17761 acaggttcat ttatgctttt tgtattgtta gtctttggtt ttgatttttt aagtgcagca
    17821 ggaaatgcta aagttttgaa ctttgcttct aatataggtg cgcttgtatt atttatggta
    17881 ttaggacaag tagattatgt aataggttta attatggcta taagtatgat tgctgggtca
    17941 tatgctgggg ctcattttgc tattaaacaa ggtgttggtt atgtaaaagt attatttatt
    18001 attattactg ctattttaat tttaaaaaat gcttttgatt atattcaaca atttgtataa
    18061 aattaaattt gcttttgatt aaagcatgaa aattgtaatc aaaccataaa ttgtcgtatg
    18121 atgtagttag aattttaaaa tgcaggaggt caagtatatg actgaaataa cattcaaagg
    18181 tggaccaatc cacttaaaag gtcaacaaat taatgaaggt gattttgcac ctgattttac
    18241 agtgttagat aatgacttaa atcaagtaac attagcagat tatgctggta aaaagaaatt
    18301 aattagtgtg gtaccatcaa ttgatacagg tgtttgtgat cagcagactc gcaaattcaa
    18361 ctctgatgct tctaaagaag aggggattgt gcttacaatt tcagcagact taccattcgc
    18421 acaaaaaaga tggtgcgctt cagcaggttt agacaatgtc attacattaa gtgaccaccg
    18481 tgacttatca tttggtgaaa actatggcgt tgttatggaa gaacttcgct tattagctcg
    18541 tgcagtattt gtattagatg cagataataa agttgtttat aaagaaatcg ttagtgaagg
    18601 tactgatttc ccagattttg atgctgcttt agctgcatac aaaaatattt aatcattaaa
    18661 gagataaatc ttaaaatgta tacatcgtgt ccatcgttgt caacagcatt aaaatagaat
    18721 tgttttctat gattgctaag acctatgggc actttttatt ggagagggac gaatatggca
    18781 gaacaacaaa caattatgga acgcttgttt catacattag atgaaaaagc taaaacatta
    18841 aataatgaaa atggccaaag ttttattgaa aatcttgggc tagcaatgga acaagtatat
    18901 accaatgaaa gaggattgtt agaacaatcg acgttacaag atcgacgtaa agcattccaa
    18961 tttgcatatt taagtttaat gcaggaagaa aagatacaag caaatcatca aattacacca
    19021 gattcaattg gattgatact aggattttta gttgagcgtt ttatgaacaa ccaagaagaa
    19081 ttacatattg ttgatattgc aagtggtgcc ggtcatttaa gtgctactgt aaaagaagtg
    19141 ttacctgaaa ttgcggttat gcatcattta attgaagttg atccagtttt atcacgtgtt
    19201 agtgtacatt tagcaaactt cttagaaatt cctttcgatg tgtatcctca agatgccatc
    19261 atgccactac cattagaaga agcagatatc gttattggtg attttccagt aggctattat
    19321 ccaattgatg aaagaagtaa ggagtttaag ctaggttttg aagaaggaca tagttattca
    19381 cattatttat taatagaaca agcaataaat gcattaaaag atgctggata tgcctttcta
    19441 gtggtaccaa gtaatatttt tacaggtgaa catgtaaaac agcttgaaaa atatattgca
    19501 acagagacag agatgcaagc atttttaaat ttaccaccaa ctttatttaa aaatgaaaaa
    19561 gcgcgaaaat ctatattaat tttacaaaag aaaaaatcgg gtgaaacaaa gccagttgaa
    19621 gtattattgg caaatattcc tgatttcaaa attccttcac aatttcaagg atttatgaca
    19681 gagttaaatc agtggatgga cacaaatcgt cctaaaaaat aatctgtaat agtatagtca
    19741 taaaactgta tgaatgataa aatgaaaaat gaaatagtat aaaaagcaaa cgatggagga
    19801 tcattactta tgtcaaaatt aatcttggct atcaatgctg gtagttcatc attaaaattt
    19861 caattaatta gaatgcctga agaggaatta gtaacaaaag gtttagtaga aagaatcgga
    19921 ttgaaggatt caatttttac aattgaagtc aacggggaaa aagttaaaac agtacaagat
    19981 atcaaggatc acgttgaggc agttgatatc atgttggatg cttttaaagc gcacaatatt
    20041 attaatgata ttaacgatat cgatggaaca ggtcaccgtg ttgtacatgg tggtgaaaaa
    20101 ttccctgaat cagtagctat tactgatgag gttgaaaagg aaattgaaga attaagcgaa
    20161 ttagcaccgc ttcacaaccc agctaacttg atgggtattc gtgctttccg taaattatta
    20221 ccaaatatcc ctcatgtggc aatttttgat acagcattcc atcaaacaat gcctgaaaaa
    20281 gcatatctat atagcttgcc atatcattat tataaagatt atggcattcg taagtatggt
    20341 ttccatggta caagccataa atttgtatca caaagagcgg cagaaatgtt agataagcca
    20401 attgaagatt tacgtattat ttcatgtcac attggtaatg gagcatcaat tgcagctatc
    20461 gatggcggta aatctattga tacatcaatg ggcttcacac cacttgctgg tgtaacaatg
    20521 ggtactcgtt ctggtaatat tgaccctgct ttaattccat ttattatgga aaaaacaggt
    20581 aaaactgctg aacaagtatt ggaaatctta aacaaagaat caggtttatt aggattatca
    20641 ggtacatcta gtgatttacg tgacttatca gaagaagctg aatcaggtaa agcacgttca
    20701 caaatggctt tagatgtatt tgcttctaaa attcacaaat atattggatc atatgctgcg
    20761 agaatgcatg gtgttgatgt tatcgtattt acagcaggta tcggtgaaaa ctcagtagaa
    20821 attcgtgcga aagttcttga aggcttagaa tttatgggtg tttactggga tcctaagaaa
    20881 aatgaaaact tactacgtgg taaagaagga tttattaact atcctcattc accagttaaa
    20941 gttgtcgtta ttccaacaga tgaagaaagt atgattgccc gtgatgttat gacattcggt
    21001 ggtttaaaat aatttttaaa taaatattaa gcgtctatct ccgctacaat tatatgtagg
    21061 aggtagacgc tttttgtatt gtttgaaaat taactagtgt aatgtctctt ttcacgaata
    21121 tcttaaagaa ttaagtagtc gaagaagatt atgaaaacat tattaagtga gttttattta
    21181 taaacaataa aaaaccaagt gcagaaagtt gcacttggtt cataatgatc aagtagttat
    21241 ctaatgatca tctatattta attttgatat ttttcacgta attgagttgt tgcaacttgt
    21301 ggttggaagt ctgctggtaa ctcttcagta cgaacaacta acacgtcaca tggcgcatga
    21361 cgaacgatag attctgatac agaaccaaca ataaatcttt ccacggcatt taagcctgat
    21421 gtaccactca taatcaagtc tgcattaatt tcatgtgcaa gctttttagg aatgatagat
    21481 ttaggagagc caaactctag acgcgtttct acatctttaa caccagcgtt agtagctact
    21541 tctttataac catttaataa ttcttctgca aaatgcttag atttttcagt aaattgagca
    21601 tcataaactt cataagaaga atacgttctt gaatcaatta cattcacaat tgttaacttc
    21661 gcatcgttac gtttagcaac accaactgct ctgttaaatg cccattccgc ttcatgtgaa
    21721 ccgtcaactg cgattaaaat atttttgtaa gtaatcatag taagtgcctc cttgttcttt
    21781 cttaattata ttttaccaca attttcggaa aagtcagtgt aataaccttt acaattttgt
    21841 ggatttttga ttgcgctttc aaaatgttcg cgttaagatg attatggagg tggatggtat
    21901 gaaaattggt ataccaaggg agattaaaaa taatgaaaat cgtgttggtt tatcaccaag
    21961 tggtgtgcac gctttagtag aaagtgggca tactgtttta gtggaaacaa atgcgggttc
    22021 aggatcattc tttgaagatg tagattacaa agaagcaggt gctgagattg ttgctgaaca
    22081 agcaaaagtt tgggatgtgg atatggttat taaagttaaa gaaccacttg aatctgaata
    22141 tccatatttt aaagaagggc ttgtattatt cacttatctt catttagcaa atgaagaaaa
    22201 attaacacaa gctttgatag atagaaaagt aattagtatt gcatatgaga ctgtgcagtt
    22261 accagaccga tctttaccat tgttatcacc aatgagtgag gtagcaggaa gaatgtcagc
    22321 tcaagttggc gcagagttcc tacaaaaact taatggtggt atgggaattc tactaggtgg
    22381 tgtcccagga gtacctaagg gtaaagtaac tattatcggt ggtggtcaag caggaacaaa
    22441 tgcagctaaa attgcactag gactaggtgc agatgttacg attttagatg ttaatccaaa
    22501 gcgtttacaa caattagatg atttattcgg tggacgtgta catacaatta tgtcaaatcc
    22561 gttgaatatt gagttgtatg ttaaacaaag tgatttagta ataggtgcag ttttaattcc
    22621 aggtgctaaa gcgccaagac ttgtaacaga agacatgatt aaacaaatga aaaatgggtc
    22681 agttattatt gacattgcta ttgatcaagg cggtattttt gaaacaactg ataaaattac
    22741 gacacatgat gatcctacat atattaagca tggtgtggtt cattatgcag ttgcaaatat
    22801 gccaggtgca gtaccgcgta cttcgacgtt agctttaaat aatgctacgc taccttatgc
    22861 gctcatgcta gctaataaag ggtatagaga agcatttaaa tcaaatcaac cattatcatt
    22921 aggtttaaat acttacaaag gtcacgtaac caataaaggc gttgcagagg catttgaaat
    22981 ggaatataaa tctgtagaag aagcattaca attataattt gaatttgatg aaaagggaat
    23041 ggattacagc gtactaaaga atgacgttat catctccttg gttattaaaa ttaaataatg
    23101 ataaattaaa gctagaaaca atgcgaagaa atcatcgaac atgaatgata ttgatttgat
    23161 tcattacatg ttactgatga acatacctgc atatgtgttt ctagcttgtt tgttacatat
    23221 tgcatttaga cttggataaa aatttatgtc ttaggcgcta caatgttata ttggcagtgt
    23281 ttgactgaat gagaatgcgc ttgtaacaag cttttcattt ttatcccact ccttattttt
    23341 cgtaatgtgt taatacttca tatccttcat tagtgacaag tatgtcatct tcaattctta
    23401 cacctgcaac accaggtaca taaatacctg gttcgattgt aataaccatg ccagcttcta
    23461 acaaattaga attagtactt gaaacatctt gatattcatg ttcttgtaat cctaggccat
    23521 gacctaagcg atgagggaaa tattcaccat aacctttttc tgaaataata tttctagcga
    23581 tatgatcgat atcttttaat ggtattccag gtttaattgc ttggattgca gatgtttctg
    23641 cttctaatac aatattataa atttcttgtg cttctttgct aggttcacca aatttaatag
    23701 tacgtgtcat atcgctacaa taatgctcat aaattacacc taaatcaaat agtacatatt
    23761 cattgctttt taatctgcga tctcctggtg tgccatgagg tgatgcggca tgatctccaa
    23821 ataaaaccat cgtatcaaaa ctcatttcat tgacgccata ttgtttgata gtttgctcaa
    23881 tatggttgac tacttcacat tcagtcacac cttcttttaa ataagaaaca cctatttcga
    23941 tacacttatc tgctaactca gcagctttac gtattttgct aatttcatct tcggatttaa
    24001 tatttctcaa ttgtttgatt gttaaatcaa catctccgaa tgaattgaca ttgaaaccag
    24061 agattaattg tttttggcgt gctactgtta agtgctcgct ttcaattagt aatttattga
    24121 ttgtttgagg ataaagtgaa aaagggtttt cagtgtctaa atatccaacg atttcacctg
    24181 tgaaaggtga tgctttgact tcttcgactt ccatttttgg acaaaatagt acttgtttac
    24241 catctttctt aatcaataat gcaaataatc tttcatgggg ttcgctacgg tatccagtaa
    24301 aataatatac attcaacggt gttgtaatcc atgctgcatc agcttgttga ttgttcaatt
    24361 cgtctattat ttttgatatt tttgtcattt tataaacact cctcaacata atattacttc
    24421 cattttatgc caattattat tagatttcaa aatcgagcta atacattaac tagattttca
    24481 atttttaaaa tttgagaatt tgttataatt aagtggcaaa agggtactaa atttatatag
    24541 taattgatag gaggatgctc aaatgaagtt atcatttcat ggtcaatcaa cgatttattt
    24601 agaagggaac aacaaaaagg ttatcgtaga tccgtttatt tcaaataacc ctaagtgtga
    24661 tttgaatatt gaaacagtgc aggtagacta tatcgtttta acgcacggtc attttgatca
    24721 ttttggtgat gttgtggaac tagcaaagaa aacaggagca acagtaattg gaagtgcaga
    24781 aatggctgac tatctttctt catatcacgg tgttgaaaat gttcatggta tgaatattgg
    24841 tggtaaagca aactttgatt tcggaagcgt taaatttgtt caagcatttc atagttcaag
    24901 ttttacacat gaaaatggta ttccagttta tttaggtatg ccaatgggta tcgtgtttga
    24961 agttgaagga aaaacaattt atcatactgg tgatacaggt ctgtttagtg acatgtcact
    25021 tattgcgaaa cgtcatccag ttgatgtatg ttttgtacca attggagata attttacgat
    25081 gggtattgat gatgcaagtt atgctattaa tgaatttatt aaaccaaaaa tttctgtacc
    25141 gattcattat gatacattcc cattaatcga acaagatcca caacaattta aagatgctgt
    25201 taatgtaggg gacgtgcaaa ttttaaaacc aggtgaatct gttcagtttt aaatagaata
    25261 tagattttac actaaaaaac acctcgctaa tctatgtgga agttatcgtc tgcatatttt
    25321 tagtgggtgt ttttatattc tactgattca gttacgacgt ggacggggga catcagtggt
    25381 tctttatcat ttctgaccta ctctcgtaat tttagtttta tacaattaga cattgattat
    25441 aaatttacta cgatataaaa aatccagaac cacagtcata atcgtttctt gtatttactc
    25501 agtcgtttga gactgcatca tgattgaaag attatttgtg attctggata aaaattttat
    25561 ttaacgatta atacagggat agtcgcacgt tttgctactt tgtggctgac acttccaagt
    25621 acaaatttct ttttgtcttc tgctttacgg ttacttaaaa caacaatttc gtatttaccg
    25681 ctattagcat gttttaatag ttcttctttt gcattaccac gaacaattat ttggtcataa
    25741 tcaataccat aatcttctaa agctttgcgt gttttttcca atcgcttgct tcgttcttca
    25801 gtaagtttgt ttaaatgaac acctgcttta attgatgctt gagcatcttg ttcgctgatt
    25861 gcgtttaaaa ctgttacgac tgtaccttcg ccagctaatt tagacacttc ttttagtgct
    25921 ttttcatttt ttaactgagt gtctacacca agtaatatat ttttatacat tagtacatcc
    25981 ctcctcactt acattctaat aaataataat ggatttttcc atttaaaatt aaagattttg
    26041 tgatctttgt gtttgttgta tattttcaaa aaataaaata ggtgaaacga tcattatttc
    26101 atttcacttc aatgcttttt atccaaaata aagttataat gtagttaata ctgttcgaaa
    26161 agaagaggta aagaatgaca aaacatgaac aaattttaga ttatattgaa tcgttatcta
    26221 taggctctaa aatttcggtg cgtaaaatcg ctaaattttt aaacgtatct gaagggacag
    26281 catatcgtgc aattaaagat gctgataaaa tgggcatggt cgcaacgata gatcgtgttg
    26341 gtacggttcg aatcgaaaaa cgtaatcgta atgaaattga acatttaact tttaatgaaa
    26401 ttgtcaatat tattgatggc caagtgttag gtggcaacaa aggtatcact aagatggtat
    26461 ctaaatttgc aattggagca atggaactca aagatatttt aaagtatatt ggtccaaaga
    26521 cattattgat tgtcggaaat cgtgaagatg tgcagattga agctttaaaa agaggtacgg
    26581 ctatattaat tactggtgga tttaagccat ctaataaagt tattaatttt gcgaatgaac
    26641 atgatttacc tgttctatca tcaagttatg atacattcct agttgcaaat attatcaaca
    26701 aagcactttt taatcagaaa atacgaaaag atatcttaat agttcaagat ataatgacgc
    26761 cattagatga tttatctgtg ctgtttgata cgatgaaaat agcagattat aagcgtatgg
    26821 cgaatcgaac tggccataca agatttccgg tagtcaatga gtcgtataaa ttagtaggta
    26881 ttgtaacaag tcgagagatg attaatacaa aggacgacga cgaaatagat aaagtgatga
    26941 cgcgaaatcc tatttatgta aatgctatga gtacagtagc aagttgtgcg catatgatga
    27001 tttgggaagg tattgaattg attcctgtcg tttcgagtaa taaaaagaca gtgggtgtga
    27061 ttaatagaca agatgtttta aagtctatgc aacttttagg aagacagcct cagatgggtg
    27121 aaacaattaa cgatcaaatc gccaaatata taacaatgaa tcaagatgga attacagtag
    27181 aagtttcacc acttttaatc aatcattacg gaacagtaag taaagcggca tttgtaagta
    27241 ttatagaaga aacaatacaa tatgaaatgc gtaaatttaa aaaaggtaat gtcatgatag
    27301 agaacttaaa tatcgtgtat attaaaacag tacctattga atcacatata acagtgcgct
    27361 ttggcatact agacgtcgga agaaacttcg ccaaaataga agtgaacatg catagtcaaa
    27421 acgacaaagt agcgagcgct ctcgtgatat gccaaatgtt tgacgaagta taggaactta
    27481 gcagagaaaa taggcataag atagatttcg cacaaacgtt ggggccccac cccaacttgc
    27541 attgtttgta gaaattaggg gtccaatttc tctgtgttgg ggcccctgaa ctaaatagta
    27601 tgaaaatata tatatctaaa taattaaaac gggcaaatag tttaatatgg tagtaacaat
    27661 ttttataatt tagatatttt gatatagact aatgcttaaa ttaagcaact tttctaaaaa
    27721 agggagtatg aaaatgatta gtactttgaa tgaaattatg aaatgtatcg aagacaacga
    27781 tacaattatt atacacagac atgttagacc agatcctgat gcatatggtt cacaacttgg
    27841 tttaaaatac tatattcagc agaaatttcc gcaaaagcaa gtatttgcag tgggtgaagc
    27901 ggaatcatca ttaagtttta ttggagagtt agataacatt gatgataaaa catatcaaga
    27961 tgcgcttgta attgtatgtg atactgccaa tgctccacga attgacgatg aacgttatag
    28021 tacaggtcgt aaacttatta aaatagatca tcatcctgca gttgatcagt atggtgatat
    28081 taatttagtt aatacgaacg cgtcatctac aagtgaaatc atttacgatt taatctcaca
    28141 ttttaatgat gaagcaattg ttaataaaga tatcgcgagc gttttatatc ttggtatcgt
    28201 cggtgatact gggcgattcc tttttaacaa tacctcagaa catactatgg aaattgctgg
    28261 aaagttaatt gggcatgata ttgatcataa tgcgctttta aataaaatga tggagaagga
    28321 cccaaaaatg ttgccgtttc aaggttatgt tttacaacat ttcgaactta tggatgatgg
    28381 attctgccaa gttaaaataa ctgaagatgt attggagcaa ttcggtattc agccaaatga
    28441 agcatctcag tttgttaata caattgctga catcaaaggc ttgaaaatat gggtatttgc
    28501 agtcgatgaa ggtaatgaaa tcagatgtcg attacgttct aaagggcaat tgattattaa
    28561 tgatattgcg caagattttg gtggcggtgg tcatccgaat gcgtcaggag tttcagtgga
    28621 cagctgggat gaatttgagc aacttgctac agctttacgc acaaaactta actaatagaa
    28681 aggggccatt caatcatggt ggcatattta aatattcata cggcttatga tttgttaaat
    28741 tcaagcttaa aaatagaaga tgccgtaaga cttgctgtgt ctgaaaatgt tgatgcactt
    28801 gccataactg acaccaatgt attgtatggt tttcctaaat tttatgatgc atgtatagca
    28861 aataacatta aaccgatttt tggtatgaca atatatgtga caaatggatt aaatacagtc
    28921 gaaacagttg ttctagctaa aaataatgat ggattaaaag atttgtatca actatcatcg
    28981 gaaataaaaa tgaatgcatt agaacatgtg tcgtttgaat tattaaaacg attttctaac
    29041 aatatgatta tcatttttaa aaaagtcggt gatcaacatc gtgatattgt acaagtgttt
    29101 gaaacccata atgacacata tatggaccac cttagtattt cgattcaagg tagaaaacat
    29161 gtttggattc aaaatgtttg ttaccaaaca cgtcaagatg ccgatacgat ttctgcatta
    29221 gcagctatta gagacaatac aaaattagac ttaattcatg atcaagaaga ttttggtgca
    29281 cattttttaa ctgaaaagga aattaatcaa ttagatatta accaagaata tttaacgcag
    29341 gttgatgtta tagctcaaaa gtgtgatgca gaattaaaat atcatcaatc tctacttcct
    29401 caatatgaga cacctaatga tgaatcagct aaaaaatatt tgtggcgtgt cttagttaca
    29461 caattgaaaa aattagaact taattatgac gtctatttag agcgattgaa atatgagtat
    29521 aaagttatta ctaatatggg ttttgaagat tatttcttaa tagtaagtga tttaatccat
    29581 tatgcgaaaa cgaatgatgt gatggtaggt cctggtcgtg gttcttcagc tggctcactg
    29641 gtcagttatt tattgggaat tacaacgatt gatcctatta aattcaatct attatttgaa
    29701 cgttttttaa acccagaacg tgtaacaatg cctgatattg atattgactt tgaagataca
    29761 cgccgagaaa gggtcattca gtacgtccaa gaaaaatatg gcgagctaca tgtatctgga
    29821 attgtgactt tcggtcatct gcttgcaaga gcagttgcta gagatgttgg aagaattatg
    29881 gggtttgatg aagttacatt aaatgaaatt tcaagtttaa tcccacataa attaggaatt
    29941 acacttgatg aagcatatca aattgacgat tttaaaaagt ttgtacatcg aaaccatcga
    30001 catgaacgct ggttcagtat ttgtaaaaag ttagaaggtt taccaagaca tacatctaca
    30061 catgcggcag gaattattat taatgaccat ccattatatg aatatgcccc tttaacgaaa
    30121 ggggatacag gattattaac gcaatggaca atgactgaag ccgaacgtat tgggttatta
    30181 aaaatagatt ttctagggtt gagaaactta tcgattattc atcaaatctt aacacaagtc
    30241 aaaaaagatt taggtattaa tattgatatc gaaaagattc cgtttgatga tcaaaaagtg
    30301 tttgaattgt tgtcgcaagg agatacgact ggcatattcc aattagagtc tgacggtgta
    30361 agaagtgtat taaaaaaatt aaagccggaa cactttgaag atattgttgc tgtaacttct
    30421 ttgtatagac caggtccaat ggaagaaatt ccaacttaca ttacaagaag acatgatcca
    30481 agcaaagttc aatatttaca tccgcattta gaacctatat taaaaaatac ttacggtgtt
    30541 attatttatc aagagcaaat tatgcaaata gcgagcacat ttgcaaactt cagttatggt
    30601 gaagcggata ttttaagaag agcaatgagt aaaaaaaata gagctgttct tgaaagtgag
    30661 cgtcaacatt ttatagaagg tgcaaagcaa aatggttatc acgaagacat tagtaagcaa
    30721 atatttgatt tgattctgaa atttgctgat tatggttttc ctagagcaca tgctgtcagc
    30781 tattctaaaa ttgcatacat tatgagcttt ttaaaagtcc attatccaaa ttatttttac
    30841 gcaaatattt taagtaatgt tattggaagt gagaagaaaa ctgctcaaat gatagaagaa
    30901 gcaaaaaaac aaggtatcac tatattgcca ccgaacatta acgaaagtca ttggttttat
    30961 aaaccttccc aagaaggcat ttatttatca attggtacaa ttaaaggtgt tggttatcaa
    31021 agtgtgaaag tgattgttga tgaacgttat cagaacggca aatttaaaga tttctttgat
    31081 tttgctagac gtataccgaa gagagtcaaa acgagaaagt tacttgaagc actgatttta
    31141 gtgggagcgt ttgatgcttt tggtaaaaca cgttcaacgt tgttgcaagc tattgatcaa
    31201 gtgttggatg gcgatttaaa cattgaacaa gatggttttt tatttgatat tttaacgcca
    31261 aaacagatgt atgaagataa agaagaattg cctgatgcac ttattagtca gtacgaaaaa
    31321 gaatatttag gattttatgt ttcgcaacac ccagtagata aaaagtttgt tgccaaacaa
    31381 tatttaacga tatttaaatt gagtaacgcg cagaattata aacctatatt agtacagttt
    31441 gataaagtta aacaaattcg aactaaaaat ggtcaaaata tggcattcgt cacattaaat
    31501 gatggcattg aaactttaga tggtgtgatt ttccctaatc agtttaaaaa gtacgaagag
    31561 ttgttatcac ataatgactt gtttatagtt agcgggaaat ttgaccatag aaagcaacaa
    31621 cgtcaactaa ttataaatga gattcagaca ttagccactt ttgaagaaca aaaattagca
    31681 tttgccaaac aaattataat tagaaataaa tcacaaatag atatgtttga agagatgatt
    31741 aaagctacga aagagaatgc taatgatgtt gtgttatcct tttatgatga aacgattaaa
    31801 caaatgacta ctttaggcta tattaatcaa aaagatagta tgtttaataa ttttatacaa
    31861 tcctttaacc ctagtgatat taggcttata taacttttat caactaataa attatgatat
    31921 agtaaactga tggttagata ttttttaacc atcagtttgc gtttatatta gttttttatg
    31981 cttattattt ttatgag
//
LOCUS       DAMQWL010000016        31786 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.016, whole genome shotgun sequence.
ACCESSION   DAMQWL010000016 DAMQWL010000000
VERSION     DAMQWL010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 31786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31786
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.016"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            32..2875
                     /gene="sdrC"
                     /locus_tag="PF788_000711"
     CDS             32..2875
                     /gene="sdrC"
                     /locus_tag="PF788_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000934401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSCRAMM family adhesin SdrC"
                     /protein_id="HDG6302989.1"
                     /translation="MNNKKTATNRKGMIPNRLNKFSIRKYSVGTASILVGTTLIFGLS
                     GHEAKAAEHTNGELNQSKNETTAPSENKTTKKVDSRQLKDNTQTATADQPKVTMSDSA
                     TVKETSSNMQSPQNATANQSTTKTSNVTTNDKSSTTYSNETDKSNLTQAKDVSTTPKT
                     TTIKPRTLNRMAVNTVAAPQQGTNVNDKVHFSNIDIAIDKGHVNQTTGKTEFWATSSD
                     VLKLKANYTIDDSVKEGDIFTFKYGQYFRPGSVRLPSQTQNLYNAQGNIIAKGIYDST
                     TNTTTYTFTNYVDQYTNVRGSFEQVAFAKRKNATTDKTAYKMEVTLGNDTYSEEIIVD
                     YGNKKAQPLISSTNYINNEDLSRNMTAYVNQPKNTYTKQTFVTNLTGYKFNPNAKNFK
                     IYEVTDQNQFVDSFTPDTSKLKDVTDQFDVIYSNDNKTATVDLMKGQTSSNKQYIIQQ
                     VAYPDNSSTDNGKIDYTLDTDKTKYSWSNSYSNVNGSSTANGDQKKYNLGDYVWEDTN
                     KDGKQDANEKGIKGVYVILKDSNGKELDRTTTDENGKYQFTGLSNGTYSVEFSTPAGY
                     TPTTANVGTDDAVDSDGLTTTGVIKDADNMTLDSGFYKTPKYSLGDYVWYDSNKDGKQ
                     DSTEKGIKGVKVTLQNEKGEVIGTTETDENGKYRFDNLDSGKYKVIFEKPAGLTQTGT
                     NTTEDDKDADGGEVDVTITDHDDFTLDNGYYEEETSDSDSDSDSDSDSDSDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDNDSDSDSDSDSDAGKHTPAKPMSTVKDQHKTAKALPETG
                     SENNNSNNGTLFGGLFAALGSLLLFGRRKKQNK"
     gene            3242..7387
                     /gene="sdrD"
                     /locus_tag="PF788_000712"
     CDS             3242..7387
                     /gene="sdrD"
                     /locus_tag="PF788_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSCRAMM family adhesin SdrD"
                     /protein_id="HDG6302990.1"
                     /translation="MLNRENKTAITRKGMVSNRLNKFSIRKYTVGTASILVGTTLIFG
                     LGNQEAKAAESTNKELNEATTSASDNQSSDKVDMQQLNQEDNTKNDNQKEMVSSQGNE
                     TTSNGNKLIEKESVQSTTGNKVEVSTAKSDEQASPKSTNEDLNTKQTISNQEALQPDL
                     QENKSVVNVQPTNEENKKVDAKTESTTLNVKSDAIKSNDETLVDNNSNSNNENNADII
                     LPKSTAPKRLNTRMRIAAVQPSSTEAKNVNDLITSNTTLTVVDADKNNKIVPAQDYLS
                     LKSQITVDDKVKSGDYFTIKYSDTVQVYGLNPEDIKNIGDIKDPNNGETIATAKHDTA
                     NNLITYTFTDYVDRFNSVQMGINYSIYMDADTIPVSKNDVEFNVTIGNTTTKTTANIQ
                     YPDYVVNEKNSIGSAFTETVSHVGNKENPGYYKQTIYVNPSENSLTNAKLKVQAYHSS
                     YPNNIGQINKDVTDIKIYQVPKGYTLNKGYDVNTKELTDVTNQYLQKITYGDNNSAVI
                     DFGNADSAYVVMVNTKFQYTNSESPTLVQMATLSSTGNKSVSTGNALGFTNNQSGGAG
                     QEVYKIGNYVWEDTNKNGVQELGEKGVGNVTVTVFDNNTNTKVGEAVTKEDGSYLIPN
                     LPNGDYRVEFSNLPKGYEVTPSKQGNNEELDSNGLSSVITVNGKDNLSADLGIYKPKY
                     NLGDYVWEDTNKNGIQDQDEKGISGVTVTLKDENGNVLKTVTTDADGKYKFTDLDNGN
                     YKVEFTTPEGYTPTTVTSGSDIEKDSNGLTTTGVINGADNMTLDSGFYKTPKYNLGNY
                     VWEDTNKDGKQDSTEKGISGVTVTLKNENGEVLQTTKTDKDGKYQFTGLENGTYKVEF
                     ETPSGYTPTQVGSGTDEGIDSNGTSTTGVIKDKDNDTIDSGFYKPTYNLGDYVWEDTN
                     KNGVQDKDEKGISGVTVTLKDENDKVLKTVTTDENGKYQFTDLNNGTYKVEFETPSGY
                     TPTSVTSGNDTEKDSNGLTTTGVIKDADNMTLDSGFYKTPKYSLGDYVWYDSNKDGKQ
                     DSTEKGIKDVKVTLLNEKGEVIGTTKTDENGKYCFDNLDSGKYKVIFEKPAGLTQTGT
                     NTTEDDKDADGGEVDVTITDHDDFTLDNGYYEEETSDSDSDSDSDSDSDRDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDRDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS
                     DAGKHTPVKPMSTTKDHHNKAKALPETGNENSGSNNATLFGGLFAALGSLLLFGRRKK
                     QNK"
     gene            7781..11245
                     /gene="sdrE"
                     /locus_tag="PF788_000713"
     CDS             7781..11245
                     /gene="sdrE"
                     /locus_tag="PF788_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_047430389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSCRAMM family adhesin SdrE"
                     /protein_id="HDG6302991.1"
                     /translation="MINRDNKKAITKKGMISNRLNKFSIRKYTVGTASILVGTTLIFG
                     LGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQP
                     EAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNN
                     TNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPV
                     NVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVA
                     SNNVNDLIKVTKQTIKVGDGKDNVAAAHDGKDIEYDTEFTIDNKVKKGDTMTINYDKN
                     VIPSDLTDKNDPIDITDPSGEVIAKGTFDKATKQITYTFTDYVDKYEDIKSRLTLYSY
                     IDKKTVPNETSLNLTFATAGKETSQNVTVDYQDPMVHGDSNIQSIFTKLDEDKQTIEQ
                     QIYVNPLKKSATNTKVDIAGSQVDDYGNIKLGNGSTIIDQNTEIKVYKVNSDQQLPQS
                     NRIYDFSQYEDVTSQFDNKKSFSNNVATLDFGDINSAYIIKVVSKYTPTSDGELDIAQ
                     GTSMRTTDKYGYYNYAGYSNFIVTSNDTGGGDGTVKPEEKLYKIGDYVWEDVDKDGVQ
                     GTDSKEKPMANVLVTLTYPDGTTKSVRTDANGHYEFGGLKDGETYTVKFETPTGYLPT
                     KVNGTTDGEKDSNGSSVTVKINGKDDMSLDTGFYKEPKYNLGDYVWEDTNKDGIQDAN
                     EPGIKDVKVTLKDSTGKVIGTTTTDASGKYKFTDLDNGNYTVEFETPAGYTPTVKNTT
                     ADDKDSNGLTTTGVIKDADNMTLDSGFYKTPKYSLGDYVWYDSNKDGKQDSTEKGIKD
                     VTVTLQNEKGEVIGTTKTDENGKYRFDNLDSGKYKVIFEKPAGLTQTVTNTTEDDKDA
                     DGGEVDVTITDHDDFTLDNGYFEEDTSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
                     SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
                     SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
                     SDSDSDAGKHTPVKPMSTTKDHHNKAKALPETGSENNGSNNATLFGGLFAALGSLLLF
                     GRRKKQNK"
     gene            11364..12836
                     /locus_tag="PF788_000714"
     CDS             11364..12836
                     /locus_tag="PF788_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDG6302992.1"
                     /translation="MNYILGTILESKITGVEKAQINRLKLFKQHGISSKCVYVKWNPY
                     SYTYAKQHQIENDVFTMYDYFQKAINYKKTKQVNWIQYWEKSCRYTLKFVENSNDVRI
                     YDEEQFVMYAHFLDKQYHQLNYVNYFDHKRRKVKRELYDGRGFLSCSRILGEGQRIVL
                     ENYYTPNGEIVIQKYFDDIKGKNTLTKVILNEDQHQQFFDTEDELVQYFLHQLCKNND
                     QIILDRPHELGNVIAGLNQSIPVIVVLHSTHLSGAGNGIKSFYKTVFNNLTRYKAIVV
                     STEKQCQDISQYIENKIPVINIPVGYVANLKYQFDINQKEKNHIISIARLVENKQIKH
                     QIEVIKQLVTKHPNIQLNIYGHGNGLSEYRQLVEDYHLSEHVKFHGFKTHINEEIAKA
                     ELMLSTSKMEGFGLAILESLSVGTPVISYDVDYGPSELIQDGFNGYLVPQGDINQMVE
                     KVDQLLNNTQKLQQFSINSIESAQQYNATTISTKWQNILN"
     gene            complement(12960..14450)
                     /locus_tag="PF788_000715"
     CDS             complement(12960..14450)
                     /locus_tag="PF788_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDG6302993.1"
                     /translation="MNYFVGNSLGVNLTGIEKAIINRLNLFKEMGRPAQCVFLSWNRY
                     LYRNAQNYITSSDYINMYDFFQEATYLERNEPFDWLSYWTDECHYTLKHVENSHDFRI
                     YDQERFLMYAHFQDPKYRILDYVNHFDSQRRKVKRDFYDVRGFLSCSRILVDKQQTLC
                     EFFYNPEGDTKLEKYFSYKDGKPEVQKIIVYYANKQYFFNNETELGAFFIKQLYQHGD
                     LFFSDRNVYTAPIFNLTPESIPVVAVLHSTHIKNIDALDSSPFKNVYKAMFENLSRYR
                     AIIVSTEQQKLDVEKRINHTIPVVNIPVGYSETIDTPVQTLDQRSVKLISVARYSPEK
                     QLHQQIELIKRLVSYVPKIELHMYGFGSESKKLNELIQKYGLENHVYLRGFLSNLDQE
                     YSDAYLSLITSNMEGFSLALLESLAHGVPVISYDIKYGPNELITSDFNGYLITKNDED
                     ALFDKVKYVIDHPEVQQRLSKGSLAKAQQYSKASLIKQWDQFVRLI"
     gene            complement(14732..15610)
                     /locus_tag="PF788_000716"
     CDS             complement(14732..15610)
                     /locus_tag="PF788_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002445753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE2"
                     /protein_id="HDG6302994.1"
                     /translation="MTEFDLSTREGRWKHFGSVDPIEGTKPTTKNEMTDLQSTHKDFL
                     FEIEEVGIKNLVYPVLVDQYQTAGTFSFSTSLTKDEKGINMSRIIESVEKHYDNGIEL
                     EFNTLYQVLRTLQTNMKQNAAGVDVSGKWFFDRYSPTTNIKAVGNADVTYGLAIDGDK
                     VTRKELTIEATVTTLCPCSKEISEYSAHNQRGVVTVKTYINKDQDIVDDYKNKILDAM
                     EANASSILYPILKRPDEKRVTERAYENPRFVEDLIRLIAADLVEFDWLDGFDIECRNE
                     ESIHQHDAFAKLKYRK"
     gene            complement(15623..16288)
                     /gene="bshB2"
                     /locus_tag="PF788_000717"
     CDS             complement(15623..16288)
                     /gene="bshB2"
                     /locus_tag="PF788_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis deacetylase BshB2"
                     /protein_id="HDG6302995.1"
                     /translation="MTDERHVLVIFPHPDDETFSSAGTLANYIQKGIPVTYACLTLGQ
                     MGRNLGNPPFATRESLPSIRERELEEACKVIGITDLRKMGLRDKTVEFEPYEHIDGMI
                     KSLIDDTNPSLIISFYPGYAVHPDHEATADAVIRTVERMPKEERPRLTLVAFSNDATE
                     ALGEPDIQNDITDFKELKIKAFEAHASQTGPFLKQLASPEIDGKQHSFLTVEPYWTYH
                     FKS"
     gene            complement(16302..16664)
                     /locus_tag="PF788_000718"
     CDS             complement(16302..16664)
                     /locus_tag="PF788_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YojF family protein"
                     /protein_id="HDG6302996.1"
                     /translation="MLEPIKEQEVIDLLASFEHKPVYLHVETTNGAYANHFDQRVFNA
                     GTFLRNIQITYTHAQLKGGNKEPYRIGLKLSNGGWVYVQGLTHFEVNEHDEFLIAGFN
                     YEGQLAAALQISERPFNL"
     gene            16940..17698
                     /gene="nagB"
                     /locus_tag="PF788_000719"
     CDS             16940..17698
                     /gene="nagB"
                     /locus_tag="PF788_000719"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDG6302997.1"
                     /translation="MKVLNLGSKKQASFYVACELYKEMAFNQHCKLGLATGGTMTDLY
                     EQLVKLLNKNQLNVDNVSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHI
                     PNGDADDMNAEASKYNDVLEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTE
                     STIKANSRYFKNEDDVPKQAISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVD
                     VPATLLHKHPNVEIYLDDEACPKNVAKIHVDEMD"
     gene            17775..18407
                     /gene="hxlA"
                     /locus_tag="PF788_000720"
     CDS             17775..18407
                     /gene="hxlA"
                     /locus_tag="PF788_000720"
                     /EC_number="4.1.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hexulose-6-phosphate synthase"
                     /protein_id="HDG6302998.1"
                     /translation="MELQLAIDLLNKEDAAELANKVKDYVDIVEIGTPIIYNEGLPAV
                     KHMADNISNVKVLADMKIIDAADYEVSQAIKFGADVITILGVAEDASIKAAIEEAHKN
                     NKQLLVDMIAVQDLEKRAKELDEMGADYIAVHTGYDLQAEGQSPLESLRTVKSVIKNS
                     KVAVAGGIKPDTIKDIVAESPDLVIVGGGIANADDPVEAAKQCRAAIEGK"
     gene            18409..18957
                     /gene="hxlB"
                     /locus_tag="PF788_000721"
     CDS             18409..18957
                     /gene="hxlB"
                     /locus_tag="PF788_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-3-hexuloisomerase"
                     /protein_id="HDG6302999.1"
                     /translation="MAKFSDYQLILDELKMTLSHVEADEFSTFASKILHAEHIFVAGK
                     GRSGFVANSFAMRLNQLGKQAHVVGESTTPAIKSNDVFVIISGSGSTEHLRLLADKAK
                     SVGADIVLITTNKDSAIGNLAGTNIVLPAGTKYDEQGSAQPLGSLFEQASQLFLDSVV
                     MGLMTEMNVTEQTMQQNHANLE"
     gene            19070..19717
                     /locus_tag="PF788_000722"
     CDS             19070..19717
                     /locus_tag="PF788_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDG6303000.1"
                     /translation="MKFDNYIFDFDGTLADTKKCGEVATQSAFKACGLTEPSSKEITH
                     YMGIPIEESFLKLADRPLDEAALAKLIDTFRHTYQSIEKDYIYEFAGITEAITSLYNQ
                     GKKLFVVSSKKSDVLERNLSAIGLNHLITEAVGSDQVSAYKPNPEGIHTIVQRYNLNS
                     QQTVYIGDSTFDVEMAQRAGMQSAAVTWGAHDARSLLHSNPDFIINDPSEINTVL"
     gene            20219..21619
                     /locus_tag="PF788_000723"
     CDS             20219..21619
                     /locus_tag="PF788_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6303001.1"
                     /translation="MDFNKENINMVDAKKAKKTVVATGIGNAMEWFDFGVYAYTTAYI
                     GANFFSPVENADIRQMLTFAALAIAFLLRPIGGVVFGIIGDKYGRKVVLTSTIILMAF
                     STLTIGLLPSYDQIGLWAPILLLLARVLQGFSTGGEYAGAMTYVAESSPDKRRNSLGS
                     GLEIGTLSGYIAASIMIAVLTFFLTDEQMASFGWRIPFLLGLFLGLFGLYLRRKLEES
                     PVFENDVATQPERDNINFLQIIRFYYKDIFVCFVAVVFFNVTNYMVTAYLPTYLEQVI
                     KLDATTTSVLITCVMAIMIPLALMFGKLADKIGEKKVFLIGTGGLTLFSIIAFMLLHS
                     QSFVVIVIGIFILGFFLSTYEATMPGSLPTMFYSHIRYRTLSVTFNISVSIFGGTTPL
                     VATWLVTKTGDPLAPAYYLTAISVIGFLVITFLHLSTAGKSLKGSYPNVDNEQDRAYY
                     AEHPKEALWWVKERKN"
     gene            22163..23539
                     /locus_tag="PF788_000724"
     CDS             22163..23539
                     /locus_tag="PF788_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDG6303002.1"
                     /translation="MNVILEQLKTHTQNKPNDIALHIDDETITYSQLNARITSAVESL
                     QKYSLNPVVAINMKSPVQSIICYLALHRLHKVPMMMEGKWQSTIHRQLIEKYGIKDVI
                     GDTGLMQNIDSPMFIDSTQLQHYPNLLHIGFTSGTTGLPKAYYRDEDSWLASFEVNEM
                     LMLKNENAIAAPGPLSHSLTLYALLFALSSGRTFIGQTTFHPEKLLNQCHKISSYKVA
                     MFLVPTMIKSLLLVYNNEHTIQSFFSSGDKLHSSIFKKIKNQANDINLIEFFGTSETS
                     FISYNLNQQAPVESVGVLFPNVELKTTNHDHNGIGTICIKSNMMFSGYVSEQCINNDE
                     WFVTNDNGYVKEQYLYLTGRQQDMLIIGGQNIYPAHVERLLTQSSSIDEAIIIGIPNE
                     RFGQIGVLLYSGDVTLTHKNVKQFLKKKVKRYEIPSMIHHVEKMYYTASGKIAREKMM
                     SMYLRGEL"
     gene            23541..24680
                     /locus_tag="PF788_000725"
     CDS             23541..24680
                     /locus_tag="PF788_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HDG6303003.1"
                     /translation="MNQAVIVAAKRTAFGKYGGTLKHLEPEQLLKPLFQHFKEKYPEV
                     ISKIDDVVLGNVVGNGGNIARKALLEAGLKDSIPGVTIDRQCGSGLESVQYACRMIQA
                     GAGKVYIAGGVESTSRAPWKIKRPHSVYETALPEFYERASFAPEMSDPSMIQGAENVA
                     KMYDVSRELQDEFAYRSHQLTAENVKNGNISQEILPITVKGEIFNTDESLKSHIPKDN
                     FGRFKPVIKGGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSN
                     FPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGAL
                     ASGHPYGASGAQLVTRLFYMFDKETMIASMGIGGGLGNAALFTRF"
     gene            24655..25020
                     /locus_tag="PF788_000726"
     CDS             24655..25020
                     /locus_tag="PF788_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein VraC"
                     /protein_id="HDG6303004.1"
                     /translation="MQHYLLDSNQRLNVSFSKDSVAAYYQCFNQPYRKEVPPLMCASL
                     WPKFDLFKKYANSELILTKSAINQTQKIEVDTIYVGHLEDIECRQTRNITRYTMALTL
                     TKNDQHVITVTQTFIKAMK"
     gene            25023..25292
                     /locus_tag="PF788_000727"
     CDS             25023..25292
                     /locus_tag="PF788_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303005.1"
                     /translation="MKFNEIWINEYLALVNDDNPIHNEIVPGQLVSQMMLMAMSLETN
                     QCQINYVKPILINENIEFIEQHEHEIIAINDDGEIKIKISLSTKK"
     gene            complement(25493..25660)
                     /locus_tag="PF788_000728"
     CDS             complement(25493..25660)
                     /locus_tag="PF788_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein VraX"
                     /protein_id="HDG6303006.1"
                     /translation="MIIYRQYHHEGAPVYEIITKTFQHVSIKCDDSFSDTEIFKLLSL
                     LQDDIDHMKVS"
     gene            complement(26167..26997)
                     /gene="thiD"
                     /locus_tag="PF788_000729"
     CDS             complement(26167..26997)
                     /gene="thiD"
                     /locus_tag="PF788_000729"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001185456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDG6303007.1"
                     /translation="MALKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTM
                     DKDTWSHDVTPLPMDVFEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYF
                     VVDPVMVCKGEDEVLNPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKK
                     AATIIFDKGAQHVIIKGGKALDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAA
                     ATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYNRIEHIDVEVTEV
                     "
     gene            27181..27837
                     /locus_tag="PF788_000730"
     CDS             27181..27837
                     /locus_tag="PF788_000730"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDG6303008.1"
                     /translation="MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFD
                     LTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTP
                     HLQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKP
                     AQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
                     "
     gene            27838..28218
                     /locus_tag="PF788_000731"
     CDS             27838..28218
                     /locus_tag="PF788_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5327 family protein"
                     /protein_id="HDG6303009.1"
                     /translation="MLNRETLIARIEQELVQAEQAQHDHDFEKHMYAIHILTSLYAST
                     SNTPHIGEQQMNRRIANHNQMPQSQITQPTHQVTVAEIEAMGGKVNTHSAHHHNKSYS
                     QPSNQQQRLATDDDIGNGESIFDF"
     gene            28351..28719
                     /locus_tag="PF788_000732"
     CDS             28351..28719
                     /locus_tag="PF788_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDG6303010.1"
                     /translation="MKLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTY
                     QMYHGLALLIIGVISGTTSINVNWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIG
                     GVLFIIGWIMLIIATFKFAG"
     gene            28840..30324
                     /locus_tag="PF788_000733"
     CDS             28840..30324
                     /locus_tag="PF788_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HDG6303011.1"
                     /translation="MEKKNKQIDRGDLKQNLSEKFVWAIAYGSCIGWGAFILPGDWIK
                     QSGPIAASIGIVIGALLMILIAVSYGALVERFPVSGGAFAFSFLSFGRYVSFFSSWFL
                     TFGYVCVVALNATAFSLLVKFLLPDVLNNGKLYTIAGWDVYITEIIIATVLLLVFMLV
                     TIRGASVSGSLQYYFCVAMVIVVLLMFFGSFFGNNFALENLQPLAEPSKGWLVSIVVI
                     VSVAPWAYVGFDNIPQTAEEFNFAPNKTFKLIVYSLLAASLTYVVMILYTGWLSTSHQ
                     SLNGQLWLTGAVTQTAFGYIGLGVLAIAIMMGIFTGLNGFLMSSSRLLFSMGRSGIMP
                     TMFSKLHSKYKTPYVAIIFLVGVSLIAPWLGRTALTWIVDMSSTGVSIAYFITCLSAA
                     KLFSYNKQSNTYAPVYKTFAIIGSFVSFIFLALLLVPGSPAALTAPSYIALLGWLIIG
                     LIFFVIRYPKLKNMDNDELSRLILNRSENEVDDMIEEPEKEKTK"
     gene            complement(30466..30918)
                     /locus_tag="PF788_000734"
     CDS             complement(30466..30918)
                     /locus_tag="PF788_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDG6303012.1"
                     /translation="MFWILNFIFSFLASMFFCVIFDAPRKLYLSCGFVGTCGWMVYTL
                     FFNGFNVHTIYSSFFGSLALGLLSHYMARKQKEPAIIFMVTGIIPLVPGGLAYDATKN
                     LVLLNFSTAINTMLEVTLIAGAIALGLLFADQISKLIVSGFVKSFKRL"
     gene            complement(30931..31695)
                     /locus_tag="PF788_000735"
     CDS             complement(30931..31695)
                     /locus_tag="PF788_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HDG6303013.1"
                     /translation="MDINSEEYKQEVLIKDVVMLAARILLESGAEGTRVEDTMTRIAK
                     KLGYSESNSFVTNTVIQFTLHSESFPRIFRITSRDTNLIKISQANKISRQITNNEISL
                     AEAKTQLEKIYVAKRDSSLPFKGFAAAMIAMSFLYLQGGRLIDVLTAILAGSLGYLVT
                     EILDRKLHAQFIPEFIGSLVIGIIAVIGHTLIPTGDLATIIIAAVMPIVPGVLITNAI
                     QDLFGGHMLMFTTKSLEALVTAFGIGAGVGSVLILV"
BASE COUNT        11629 a         4924 c         5617 g         9616 t
ORIGIN      
        1 aaattttgat attttaaagg agtattatta aatgaataat aaaaagacag caacaaatag
       61 aaaaggcatg ataccaaatc gattaaacaa attttcgata agaaagtatt ctgtaggtac
      121 tgcttcaatt ttagtaggga caacattgat ttttgggtta agtggtcatg aagctaaagc
      181 ggcagaacat acgaatggag aattaaatca atcaaaaaat gaaacgacag ccccaagtga
      241 gaataaaaca actaaaaaag ttgatagtcg tcaactaaaa gacaatacgc aaactgcaac
      301 tgcagatcag cctaaagtga caatgagtga tagtgcaaca gttaaagaaa ctagtagtaa
      361 catgcaatca ccacaaaacg ctacagctaa tcaatctact acaaaaacta gcaatgtaac
      421 aacaaatgat aaatcatcaa ctacatatag taatgaaact gataaaagta atttaacaca
      481 agcaaaagat gtttcaacta cacctaaaac aacgactatt aaaccaagaa ctttaaatcg
      541 catggcagtg aatactgttg cagctccaca acaaggaaca aatgttaatg ataaagtaca
      601 tttttcaaat attgacattg cgattgataa aggacatgtt aatcagacta ctggtaaaac
      661 tgaattttgg gcaacttcaa gtgatgtttt aaaattaaaa gcaaattaca caatcgatga
      721 ttctgttaaa gagggcgata tatttacttt taaatatggt caatatttcc gtccaggatc
      781 agtaagatta ccttcacaaa ctcaaaattt atataatgcc caaggtaata ttattgcaaa
      841 aggtatttat gatagtacaa caaacacaac aacatatact tttacgaact atgtagatca
      901 atatacaaat gttagaggta gctttgaaca agttgcattt gcgaaacgta aaaatgcaac
      961 aactgataaa acagcttata aaatggaagt aactttaggt aatgatacat atagcgaaga
     1021 aatcattgtc gattatggta ataaaaaagc acaaccgctt atttcaagta caaactatat
     1081 taacaatgaa gatttatcgc gtaatatgac tgcatatgta aatcaaccta aaaatacata
     1141 tactaaacaa acgtttgtta ctaatttaac tggatataaa tttaatccaa atgcaaaaaa
     1201 cttcaaaatt tacgaagtga cagatcaaaa tcaatttgtg gatagtttca cccctgatac
     1261 ttcaaaactt aaagatgtta ctgatcaatt cgatgttatt tatagtaatg ataataaaac
     1321 agctacagtc gatttaatga aaggccaaac aagcagcaat aaacaataca tcattcaaca
     1381 agttgcttat ccagataata gttcaacaga taatggaaaa attgattata ctttagacac
     1441 tgacaaaact aaatatagtt ggtcaaatag ttattcaaat gtgaatggct catcaactgc
     1501 taatggcgac caaaagaaat ataatctagg tgactatgta tgggaagata caaataaaga
     1561 tggtaaacaa gatgccaatg aaaaagggat taaaggtgtt tatgtcattc ttaaagatag
     1621 taacggtaaa gaattagatc gtacgacaac agatgaaaat ggtaaatatc agttcactgg
     1681 tttaagcaat ggaacttata gtgtagagtt ttcaacacca gccggttata caccgacaac
     1741 tgcaaatgta ggtacagatg atgctgtaga ttctgatgga ctaactacaa caggtgtcat
     1801 taaagacgct gacaacatga cattagatag tggattctac aaaacaccaa aatatagttt
     1861 aggtgattat gtttggtacg acagtaataa agatggtaaa caagattcga ctgaaaaagg
     1921 aattaaaggt gttaaagtta ctttgcaaaa cgaaaaaggc gaagtaattg gtacaactga
     1981 aacagatgaa aatggtaaat accgctttga taatttagat agtggtaaat acaaagttat
     2041 ctttgaaaaa cctgctggct taactcaaac aggtacaaat acaactgaag atgataaaga
     2101 tgccgatggt ggcgaagttg atgtaacaat tacggatcat gatgatttca cacttgataa
     2161 tggctactac gaagaagaaa catcagatag cgactcagat tctgacagcg attcagactc
     2221 agatagcgac tcagattcag atagcgactc agattcagac agcgattcag acagcgactc
     2281 agactcagat agcgattcag attcagacag cgactcagac tcagacagcg attcagactc
     2341 ggatagcgac tcagactcag atagcgactc agattcggat agcgactcag actcagatag
     2401 cgattcagat tcagatagcg attcggactc agacagtgat tcagattcag actcagatag
     2461 cgactcagat tctgacagcg attcagactc agacagcgac tcagactcag acagtgattc
     2521 agattcagac agcgactcag attcagatag cgactcagac tcagatagcg actcagactc
     2581 agatagcgac tcagactcgg atagcgattc agattcagac agcgactcag attcagatag
     2641 cgattcggac tcagacaacg actcagattc agatagcgat tcagattcag atgcaggtaa
     2701 acatactccg gctaaaccaa tgagtacggt taaagatcag cataaaacag ctaaagcatt
     2761 accagaaaca ggtagtgaaa ataataattc aaataatggc acattattcg gtggattatt
     2821 cgcggcatta ggatcattat tgttattcgg tcgtcgtaaa aaacaaaata aataatatga
     2881 ttaacttaac caggtccatg tggcctggtt ttttctgttt agaaattccc agatataaaa
     2941 caaaaaatct ttaaggaata gatacaattt aatttgttac agaaatgtaa ttgtctatga
     3001 attagaaaag ctaagatatt aatttcaagg gcaaataata ctatttttta tgatgattaa
     3061 ataaagatta caaaactcat aaaaactttt atttaaacac aaatgttaaa taacgtttta
     3121 cgataaagaa aaataattaa agtattgtgc tttatctaaa aatgtaatac tatattgata
     3181 tacatttttg tatttaaaac aattgtatta tttaaaaatt tgatgaatta ggagtaatct
     3241 aatgctaaac agagaaaata aaacggcaat aacaaggaaa ggcatggtat ccaatcgatt
     3301 aaataaattt tcgattagaa agtacacagt gggaacagca tcaattttag taggtacaac
     3361 attaattttt ggtctgggga accaagaagc aaaggctgca gaaagtacta ataaagaatt
     3421 gaacgaagcg acaacttcag caagtgataa tcaatcgagt gataaagttg atatgcagca
     3481 actaaatcaa gaagacaata ctaaaaatga taatcaaaaa gaaatggtat catctcaagg
     3541 taatgaaacg acttcaaatg ggaataaatt aatagaaaaa gaaagtgtac aatctaccac
     3601 tggaaataaa gttgaagttt caactgccaa atcagatgag caagcttcac caaaatctac
     3661 gaatgaagat ttaaacacta aacaaactat aagtaatcaa gaagcgttac aacctgattt
     3721 gcaagagaat aaatcagtgg taaatgttca accaactaat gaggaaaaca aaaaggtaga
     3781 tgccaaaact gaatcaacta cattaaatgt taaaagtgat gctatcaaga gtaatgatga
     3841 aactcttgtt gataacaata gtaattcaaa taatgaaaat aatgcagata tcattttgcc
     3901 aaaaagtaca gcacctaaac gtttgaatac aagaatgcgt atagcagcag tacagccatc
     3961 atcaacagag gctaaaaatg ttaatgattt aatcacatca aatacaacat taactgtcgt
     4021 tgatgcagat aaaaacaata aaatcgtacc agcccaagat tatttatcat taaaatcaca
     4081 aattacagtt gatgacaaag ttaaatcagg tgattatttc acaattaaat actcagatac
     4141 agtacaagta tatggattga atccggaaga tattaaaaat attggtgata ttaaagatcc
     4201 aaataatggt gaaacaattg cgactgcaaa acatgatact gcaaataatt taattacata
     4261 tacatttaca gattatgttg atcgatttaa ttctgtacaa atgggaatta attattcaat
     4321 ttatatggat gctgatacaa ttcctgttag taaaaacgat gttgagttta atgttacgat
     4381 aggtaatact acaacaaaaa caactgctaa cattcaatat ccagattatg ttgtaaatga
     4441 gaaaaattca attggatcag cgttcactga aacagtttca catgttggaa ataaagaaaa
     4501 tccagggtac tataaacaaa cgatttatgt aaatccatcg gaaaattctt taacaaatgc
     4561 caaactaaaa gttcaagctt accactcaag ttatcctaat aatatcgggc aaataaataa
     4621 agatgtaaca gatataaaaa tatatcaagt tcctaaaggt tatacattaa ataaaggata
     4681 cgatgtgaat actaaagagc ttacagatgt aacaaatcaa tacttgcaga aaattacata
     4741 tggcgacaac aatagcgctg ttattgattt tggaaatgca gattctgctt atgttgtaat
     4801 ggttaataca aaattccaat atacaaatag cgaaagccca acacttgttc aaatggctac
     4861 tttatcttca acaggtaata aatccgtttc tactggcaat gctttaggat ttactaataa
     4921 ccaaagtggc ggagctggtc aagaagtata taaaattggt aactacgtat gggaagatac
     4981 taataaaaac ggtgttcaag aattaggaga aaaaggcgtt ggcaatgtaa ctgtaactgt
     5041 atttgataat aatacaaata caaaagtagg agaagcagtt actaaagaag atgggtcata
     5101 cttgattcca aacttaccta atggagatta ccgtgtagaa ttttcaaact taccaaaagg
     5161 ttatgaagta accccttcaa aacaaggtaa taacgaagaa ttagattcaa acggcttatc
     5221 ttcagttatt acagttaatg gcaaagataa cttatctgca gacttaggta tttacaaacc
     5281 taaatacaac ttaggtgact atgtctggga agatacaaat aaaaatggta tccaagacca
     5341 agatgaaaaa ggtatatctg gcgtaacggt aacattaaaa gatgaaaacg gtaacgtgtt
     5401 aaaaacagtt acaacagacg ctgatggcaa atataaattt actgatttag ataatggtaa
     5461 ttataaagtt gaatttacta caccagaagg ctatacaccg actacagtaa catctggtag
     5521 cgacattgaa aaagactcta atggtttaac aacaacaggt gttattaatg gtgctgataa
     5581 catgacatta gatagtggat tctacaaaac accaaaatat aatttaggta attatgtatg
     5641 ggaagataca aataaagatg gtaagcagga ttcaactgaa aaaggtattt caggcgtaac
     5701 agttacattg aaaaatgaaa acggtgaagt tttacaaaca actaaaacag ataaagatgg
     5761 taaatatcaa tttactggat tagaaaatgg aacttataaa gttgaattcg aaacaccatc
     5821 aggttacaca ccaacacaag taggttcagg aactgatgaa ggtatagatt caaatggtac
     5881 atcaacaaca ggtgtcatta aagataaaga taacgatact attgactctg gtttctacaa
     5941 accgacttac aacttaggtg actatgtatg ggaagataca aataaaaacg gtgttcaaga
     6001 taaagatgaa aagggcattt caggtgtaac agttacgtta aaagatgaaa acgacaaagt
     6061 tttaaaaaca gttacaacag atgaaaatgg taaatatcaa ttcactgatt taaacaatgg
     6121 aacttataaa gttgaattcg agacaccatc aggttataca ccaacttcag taacttctgg
     6181 aaatgatact gaaaaagatt ctaatggttt aacaacaaca ggtgtcatta aagatgcaga
     6241 taacatgaca ttagacagtg gtttctataa aacaccaaaa tatagtttag gtgattatgt
     6301 ttggtacgac agtaataaag acggcaaaca agattcaact gaaaaaggta tcaaagatgt
     6361 taaagttact ttattaaatg aaaaaggcga agtaattgga acaactaaaa cagatgaaaa
     6421 tggtaaatac tgctttgata atttagatag cggtaaatac aaagttattt ttgaaaagcc
     6481 tgctggctta acacaaacag gtacaaatac aactgaagat gataaagatg cagatggtgg
     6541 cgaagttgac gtaacaatta cggatcatga tgatttcaca cttgataatg gatactacga
     6601 agaagaaaca tcagatagcg actcagattc ggacagcgac tcagattcag acagagactc
     6661 agactcagat agtgattcag actcggatag cgattcagat tcagacagcg attcagattc
     6721 agatagcgat tcagattcag acagagactc agatagtgat tcagactcag atagcgactc
     6781 agattcagac agcgactcag attcagacag cgactcagac tcagatagtg attcagactc
     6841 agatagcgac tcagattcag acagcgactc agactcagac agcgactcag actcagatag
     6901 tgactcagat tcagatagcg actcagattc ggacagcgat tcagactcag atagcgactc
     6961 agattcagat agcgattcgg actcagatag cgactcagat tcagatagtg attcagactc
     7021 agatagcgac tcagattcag acagcgactc agattcggat agcgactcag attcagacag
     7081 cgactcagac tcggatagtg attcagactc agatagcgac tcagactcag atagcgattc
     7141 agattcagat agcgactcag actcagacag cgattcagac tcagacagcg actcagactc
     7201 agatgcaggt aagcacacac ctgttaaacc aatgagtact actaaagacc atcacaataa
     7261 agcaaaagca ttaccagaaa caggtaatga aaatagcggc tcaaataacg caacgttatt
     7321 tggcggatta ttcgcagcat taggatcatt attgttattc ggtcgtcgta aaaaacaaaa
     7381 taaataatac agcttatacc aggtccgtga ggcctggttt tttatttcaa aatttatgaa
     7441 atgtatctta tgtttgagat taaatagtgc aattttttaa aaaatataac ataaatcaac
     7501 ataaatttaa ttcatcttta cattaaaagt acaaacgaat aagaaaagca attaaacaca
     7561 gtatcaaacc atttaaaaca attgatataa aaaacaaacg aataattaaa aagtactaga
     7621 attaatttat tcaaaccaaa gtgtaaaata acagtcttag ataaataaat ttatttaaag
     7681 tattgtgctt tatctaaaaa tgtattacga tgggaataca aatttttata tgtaaaaata
     7741 ttaatttttt gcaaatattg atattttaaa ggagatttat atgattaaca gggataataa
     7801 aaaggcaata acaaaaaagg gtatgatttc aaatcgctta aacaaatttt cgattagaaa
     7861 gtatactgta ggaactgcat cgattttagt aggtacgaca ttgatttttg gtctagggaa
     7921 ccaagaagct aaagctgctg aaaacactag tacagaaaat gcaaaacaag atgatgcaac
     7981 gactagtgat aataaagaag tagtgtcgga aactgaaaat aattcgacaa cagaaaataa
     8041 ttcaacaaat ccaattaaga aagaaacaaa tactgattca caaccagaag ctaaaaaaga
     8101 atcaacttca tcaagtactc aaaaacagca aaataacgtt acagctacaa ctgaaactaa
     8161 gcctcaaaac attgaaaaag aaaatgttaa accttcaact gataaaactg cgacagaaga
     8221 tacatctgtt attttagaag agaagaaagc accaaataat acaaataacg atgtaactac
     8281 aaaaccatct acaagtgaac catctacaag tgaaattcaa acaaaaccaa ctacacctca
     8341 agaatctaca aatattgaaa attcacaacc gcaaccaacg ccttcaaaag tagacaatca
     8401 agttacagat gcaactaatc caaaagaacc agtaaatgtg tcaaaagaag aacttaaaaa
     8461 taatcctgag aaattaaaag aattggttag aaatgatagc aatacagatc attcaactaa
     8521 accagttgct acagctccaa caagtgttgc accaaaacgt gtaaacgcaa aaatgcgctt
     8581 tgcagttgca caaccagcag cagttgcttc aaacaatgta aatgatttaa ttaaagtgac
     8641 gaagcaaaca atcaaagttg gcgatggtaa agataatgtg gcagcagcgc atgacggtaa
     8701 agatattgaa tatgatacag agtttacaat tgacaataaa gtcaaaaaag gcgatacaat
     8761 gacgattaat tatgataaga atgtaattcc ttcggattta acagataaaa atgatcctat
     8821 cgatattact gatccatcag gagaggtcat tgctaaagga acatttgata aagcaactaa
     8881 gcaaatcaca tatacattta cagactatgt agataaatat gaagatataa aatcacgctt
     8941 aactctatat tcgtatattg ataaaaaaac agttccaaat gagacaagtt tgaatttaac
     9001 atttgctaca gcaggtaaag aaacaagcca aaatgtcact gttgattatc aagatccaat
     9061 ggtccatggt gattcaaaca ttcaatctat ctttacaaaa ttagatgaag ataagcaaac
     9121 tattgaacaa caaatttatg ttaacccatt gaaaaaatca gcaaccaaca ctaaagttga
     9181 tatagctggt agtcaagtag atgattatgg aaatattaaa ctaggaaatg gtagcaccat
     9241 tattgaccaa aatacagaaa taaaggttta taaagttaac tctgatcaac aattgcctca
     9301 aagtaataga atctatgatt ttagtcaata cgaagatgta acaagtcaat ttgataataa
     9361 aaaatcattt agtaataatg tagcaacatt ggattttggt gatattaatt cagcctatat
     9421 tatcaaagtt gttagtaaat atacacctac atcagatggc gaactagata ttgcccaagg
     9481 tactagtatg agaacaactg ataaatatgg ttattataat tatgcaggat attcaaactt
     9541 catcgtaact tctaatgaca ctggcggtgg cgacggtact gttaaacctg aagaaaagtt
     9601 atacaaaatt ggtgactatg tatgggaaga cgttgataaa gacggtgttc aaggtacaga
     9661 ttcaaaagaa aaaccaatgg caaacgtttt agttacatta acttacccgg acggtactac
     9721 aaaatcagta agaacagatg ctaatggtca ttatgaattc ggtggtttga aagacggaga
     9781 aacttataca gttaaattcg aaacgccaac tggatatctt ccaacaaaag taaatggaac
     9841 aactgatggt gaaaaagact caaatggtag ttcggttact gttaaaatta atggtaaaga
     9901 tgatatgtct ttagatactg gtttttacaa agaacctaaa tacaacttag gtgactatgt
     9961 atgggaagat actaataaag atggtatcca agatgcaaat gagccaggaa tcaaagatgt
    10021 taaggttaca ttaaaagata gtactggaaa agttattggt acaactacta ctgatgcctc
    10081 gggtaaatat aaatttacag atttagataa tggtaactat acagtagaat ttgaaacacc
    10141 agcaggttac acgccaacgg ttaaaaatac tacagctgat gataaagatt ctaatggttt
    10201 aacaacaaca ggtgtcatta aagatgcaga taatatgaca ttagacagtg gtttctataa
    10261 aacaccaaaa tacagtttag gtgattatgt ttggtacgac agtaataaag acggcaaaca
    10321 agattcaact gaaaaaggta tcaaagatgt gacagttaca ttgcaaaacg aaaaaggcga
    10381 agtaattgga acaactaaaa cagatgaaaa tggtaaatat cgtttcgata atttagatag
    10441 cggtaaatac aaagttattt ttgaaaagcc tgctggctta acacaaacag ttacaaatac
    10501 aactgaagat gataaagatg cagatggtgg cgaagttgac gtaacaatta cggatcatga
    10561 tgatttcaca cttgataacg gatacttcga agaagataca tcagacagcg attcagactc
    10621 agatagtgac tcagacagcg actcagactc agacagcgac tcagactcag acagtgattc
    10681 agattcagac agcgactcag attcagatag cgactcagat tcggacagcg attcagactc
    10741 agatagcgac tcagattcag atagcgattc agactcagac agcgactcag attcagatag
    10801 cgattcggac tcagacagcg attcagactc agatagcgac tcagactcag acagcgactc
    10861 agattcagat agcgattcgg actcagatag cgactcagat tcagacagcg attcagactc
    10921 agatagcgac tcagactcag acagtgattc agattcagac agcgactcag actcagatag
    10981 cgactcagat tcggacagcg actcagactc tgatagcgac tcagactcag acagtgattc
    11041 agacagcgat tcagactcgg atgcaggaaa acatacacct gttaaaccaa tgagtactac
    11101 taaagaccat cacaataaag caaaagcatt accagaaaca ggtagtgaaa ataacggctc
    11161 aaataacgca acgttatttg gtggattatt tgcagcatta ggttcattat tgttattcgg
    11221 tcgtcgcaaa aaacaaaaca aataatacaa tatgacccag gtccttgtgg cctggttttt
    11281 ttataattac acatgcaata gatgtatttt tcatataaaa taaacaataa agatacggaa
    11341 taaaacttat atgaggcgat aatatgaatt acattttagg aacaatttta gaaagtaaaa
    11401 ttacaggtgt agaaaaagcg caaataaata gattgaagtt gttcaaacaa cacggcatat
    11461 cttcaaaatg tgtatatgtt aaatggaatc cttattcata cacatatgcg aagcaacatc
    11521 agattgaaaa tgatgtattt acaatgtatg actattttca aaaagcaatc aattataaaa
    11581 agacaaagca agttaactgg atacagtatt gggaaaagtc atgtaggtac acattgaaat
    11641 ttgtggaaaa ttcaaatgat gtcagaatat atgatgaaga gcaatttgta atgtatgctc
    11701 attttttaga taaacagtat catcaattaa attatgtgaa ttattttgat cataaaagaa
    11761 gaaaagtaaa acgcgaattg tatgatggaa gaggcttttt aagttgttct cgaattttag
    11821 gtgaaggaca acggattgta ctcgaaaatt actatacacc taatggggaa atcgtcatcc
    11881 aaaaatattt tgacgatata aaagggaaaa acacgctcac aaaggttatc ttaaatgaag
    11941 accagcatca acaatttttt gatacagaag atgaattagt tcaatatttt ctccatcaat
    12001 tatgtaaaaa taatgatcaa atcatattag atcgtcctca tgaattagga aatgttatag
    12061 cgggattaaa tcaaagtatt ccagttattg ttgtactcca tagtacacat ttatccggtg
    12121 ccggtaatgg tataaaaagt ttttataaaa cagtgtttaa taatttaaca cgttataaag
    12181 cgattgttgt atcaacagaa aagcaatgcc aagatatttc acaatatatt gaaaataaaa
    12241 taccagttat caatattccg gttggctacg tggcaaattt aaagtatcaa tttgacatca
    12301 atcaaaagga gaaaaatcat atcatatcaa ttgctcgcct cgttgaaaat aaacaaatta
    12361 aacatcaaat tgaagtaatc aagcaattag taacaaaaca tcccaatatt caattgaata
    12421 tttatggaca tggaaatggt ttgtcagaat atcgacaact tgtagaagat tatcatttat
    12481 cggaacatgt taaatttcat ggttttaaga cgcatattaa tgaagagatt gctaaagcag
    12541 aactgatgtt atcgacaagt aaaatggaag gttttggctt agcaatttta gagtcgcttt
    12601 cagtaggtac accagtgatc agttatgatg tagattatgg tccatcagaa ctgattcaag
    12661 atggatttaa tggctattta gtacctcaag gtgacatcaa tcaaatggtt gaaaaggtcg
    12721 accaattact aaataatact caaaaattgc aacagttttc aattaatagc atagaatctg
    12781 cacaacagta caatgcaact actatcagta caaagtggca aaatatttta aactaagtca
    12841 aaagaaaaaa gcattttcct agaatcatct atttaacaaa cctcgttcat acgaacttac
    12901 atgtttagtt aaatgacata ggaaaatgct atttttgtaa aaataaaggt aaagtacatt
    12961 tatataagac gaacaaattg gtcccattgt ttaattaacg acgctttact atattgttgt
    13021 gcttttgcca aactaccttt tgacagtcgt tgctgtactt caggatgatc aatcacatat
    13081 tttactttat caaatagggc atcttcatca tttttagtaa ttaaataacc attgaaatct
    13141 gaagtaatca gttcgttagg tccatattta atatcataac taataactgg aacaccatgt
    13201 gctaaagatt caagtagcgc taaagagaaa ccttccatgt tacttgttat taaactcaaa
    13261 taggcatcgc tatattcttg gtctagattg cttaaaaagc cgcgtaagta aacatgattt
    13321 tccaatccat atttttgtat caattcattt aattttttac tttcagaacc aaaaccatac
    13381 atatgaagct ctatttttgg gacatacgat actaagcgtt taattaattc aatttgttga
    13441 tgtaattgtt tttcaggtga ataacgagca acggaaatta atttaacact gcgctgatct
    13501 aatgtttgga ctggtgtatc aattgtttca ctatagccga caggaatatt aacaactgga
    13561 atagtatggt taatacgttt ttcaacatct aatttttgct gctcagtaga aacgataatt
    13621 gcacgatatc gagataaatt ttcaaacatc gctttatata catttttaaa tggcgatgaa
    13681 tctaatgcat caatattttt aatgtgtgta ctgtgaagca cagctactac tgggattgac
    13741 tcaggcgtta agttgaaaat aggtgctgtg tacacattac gatcactgaa aaataaatcc
    13801 ccatgttgat atagttgttt aatgaaaaat gcgcctaatt ccgtttcatt attaaagaaa
    13861 tattgtttgt tagcatagta aacaataatt ttttgtactt ctggtttgcc atccttgtaa
    13921 gaaaaatact tttctaattt tgtgtcacct tctggattat agaaaaattc acataatgtt
    13981 tgttgtttat caacaagaat cctactacaa cttaaaaagc cacgcacatc ataaaaatca
    14041 cgttttactt ttcgtctttg actatcaaaa tgatttacat aatctaatat acgatattta
    14101 ggatcttgaa aatgggcata cattaagaaa cgctcttgat catatattct aaagtcatga
    14161 ctattttcaa catgttttaa agtataatga cattcatcag tccaatacga caaccagtca
    14221 aatggttcat tgcgttctaa atatgttgct tcttggaaga aatcatacat attaatatag
    14281 tcagaactag taatataatt ttgggcattt ctatataaat atctattcca tgacagaaat
    14341 acacattgcg ctggtcttcc catttcttta aataaattta aacgattaat aattgctttc
    14401 tctatcccag ttaaattaac acctaaacta ttacctacaa aataattcat ttacaacacc
    14461 acttatatct attttttata attatatcac ataatattta attacttctt ttaactggaa
    14521 gatgtgttta tttataaaac aacaaatttt gatatttata atgatagtag ttattcaatc
    14581 aactacgacc aatatatcat tgtagagctt aggatattga tttatgactc aggcacatca
    14641 aatgagaaga tttataaaag agatatacaa ctctagaagg tataataaaa acgcgcaact
    14701 aatgttacgc gtttgaatta atcatatgat attatttgcg atactttaat ttagcgaaag
    14761 catcatgttg atggatagac tcttcattac gacattcgat atcgaaaccg tctaaccaat
    14821 caaattcaac taagtccgcg gcaattaaac gaattaagtc ttcgacaaaa cgtggatttt
    14881 catatgcacg ctctgtcaca cgtttttcat caggacgttt taaaataggg tatagaattg
    14941 aacttgcatt agcttccatt gcatctaaaa ttttattttt atagtcatca actatgtctt
    15001 gatctttatt aatatatgtt ttaacagtga caacaccacg ttggttgtgc gctgaatact
    15061 cacttatttc ttttgaacaa gggcatagcg ttgtgacagt tgcttcaata gtaagttctt
    15121 tacgtgtaac tttatcaccg tcaattgcta atccataagt gacatcggca ttaccaactg
    15181 ctttaatatt tgtggttgga ctatagcgat caaagaacca tttcccagaa acatcaacgc
    15241 ctgccgcatt ttgtttcata ttcgtttgta aagtgcgtaa cacctgataa agtgtattaa
    15301 attcaagttc aataccatta tcatagtgct tttcaacact ttcgattata cggctcatat
    15361 taataccttt ttcgtctttt gttaaacttg ttgaaaaact aaatgtgcca gctgtttgat
    15421 actggtcaac aagtacaggg tacactaagt ttttaatacc aacttcttct atttcaaata
    15481 aaaaatcttt atgtgtactt tgtaaatctg tcatttcgtt cttagtagta ggtttcgtgc
    15541 cttcaatagg atctacggaa ccaaagtgtt tccaacgacc ttctcgtgtc gataaatcaa
    15601 attcagtcat ttttttcctc cgttaagatt taaagtgata tgtccaatat ggttcgactg
    15661 ttaaaaagct gtgttgttta ccatcgattt caggacttgc taattgtttt aaaaatggac
    15721 ctgtttgaga agcatgtgct tcaaatgcct taattttaag ttctttaaaa tctgtaatat
    15781 cattttgaat atcaggttct ccaagagctt cggttgcatc attactgaac gcaactaaag
    15841 ttaaacgagg gcgttcttct ttaggcatgc gttcaaccgt tcgaattaca gcgtctgctg
    15901 ttgcttcgtg atcaggatgt actgcatatc caggataaaa tgaaataatc aatgatggat
    15961 ttgtatcatc gattaaagat ttaatcatac catctatatg ttcatagggt tcaaattcga
    16021 cagttttgtc acgtaaaccc atttttctta aatcagtaat accgataact ttacaagctt
    16081 cttctagttc acgctcacga atacttggta atgattcgcg tgttgcaaat gggggattac
    16141 ctaaatttct gcccatttgt cctagggtta aacatgcata tgttacaggt atgccttttt
    16201 ggatataatt tgctaatgtg cctgcagatg agaaggtttc atcatcagga tgtggaaata
    16261 ttactaatac atgtctttcg tcagtcatgt tgatgcctcc tctataaatt aaatggtcgc
    16321 tcactaattt gaagtgctgc agcgagttga ccttcgtaat taaaacctgc aattaaaaat
    16381 tcatcatgct cattgacctc aaaatgcgtt agaccttgta cataaaccca accaccattt
    16441 gatagtttaa gaccaatgcg ataaggttct ttattaccac cttttagttg tgcatgcgta
    16501 tatgttattt gtatgtttct taaaaaagta ccagcattaa aaacacgttg atcgaaatgg
    16561 ttcgcatagg ccccatttgt cgtttcaaca tgcagataca caggtttatg ttcaaaagaa
    16621 gcaagtaaat ctataacttc ttgttcttta attggttcca acacgttcac tccttacact
    16681 atcaatgtgt ttatctttct attttactaa aaactattcg ataattgtat acgattgctc
    16741 aattatttat aaattaattt tcatgaaggg taattactca ggattacgta atcatacagc
    16801 attagttttt tacttttaaa aatcaaaaat ttgttggaat ttgaaaagtg ttaaacatta
    16861 aaaatgatgc tatattaatg gtgtatgaat gaattcataa gtttttaaaa tgtattaaat
    16921 ttgtggaggc atgtaaacaa tgaaagtatt aaacttagga tcgaaaaaac aagcatcatt
    16981 ctatgttgca tgtgagttat ataaagagat ggcatttaat cagcactgta aactaggttt
    17041 agcaactggt ggtacaatga cagatttgta tgaacaactt gttaagttat taaataaaaa
    17101 tcagttaaac gtagacaatg tatccacgtt taatttagac gaatatgtag gtttaaccgc
    17161 atcacatccg caaagttatc actattatat ggatgacatg cttttcaaac aatatcctta
    17221 ttttaataga aagaacattc atattccaaa tggagatgcc gatgatatga atgcggaagc
    17281 gtcaaaatat aatgacgttt tagaacaaca aggtcaacgt gatattcaaa ttttaggtat
    17341 tggtgaaaat ggtcatattg gatttaatga acctggtacg ccgtttgata gcgttactca
    17401 tatcgttgat ttgactgaaa gtactattaa ggctaatagt cgatatttta aaaacgaaga
    17461 tgatgttcca aagcaagcca tttcgatggg acttgctaat attcttcaag ccaaacgtat
    17521 cattttactc gcatttggtg aaaagaaacg tgctgctatt acacatttat taaatcagga
    17581 aatttctgtt gatgttccag ccacattact tcacaaacac ccgaatgttg agatatattt
    17641 agacgacgaa gcttgcccga aaaatgttgc gaaaattcat gtcgatgaaa tggattgatt
    17701 gcaatgttta attaagaaat gcctcgggaa aggttccaat agaaagataa aaagcattgg
    17761 aaggatgatt tttagtggaa ttacaattag caattgattt attaaacaaa gaagacgcgg
    17821 ctgagttagc aaataaagta aaagattatg tagatatcgt agaaatcggt acgccaatca
    17881 tttacaacga aggtttacca gcagttaaac atatggcaga caacattagt aatgtaaaag
    17941 tattagcaga catgaaaatt atagatgcag ctgattatga agttagccaa gcaattaaat
    18001 ttggcgcgga tgtaattaca atactaggtg ttgcagaaga tgcatcaatt aaagcagcta
    18061 ttgaagaagc tcataaaaat aataaacaat tactagttga tatgattgct gttcaagatt
    18121 tagaaaaacg tgcaaaagaa ctagatgaaa tgggtgctga ttatattgca gtacacactg
    18181 gttatgattt acaagcagaa gggcaatcac cattagaaag tttaagaacc gttaaatctg
    18241 ttattaaaaa ttctaaagtt gcagtagcag gtggaattaa accagataca attaaagata
    18301 ttgtcgctga aagtcctgat cttgttattg ttggtggcgg aatcgcaaat gcagatgatc
    18361 cagtagaagc tgcaaaacaa tgtcgcgctg caatcgaagg taagtaatat ggctaaattt
    18421 agtgactatc aattaattct agatgaatta aagatgactt tgtcacatgt tgaagcggat
    18481 gagttttcaa cttttgcatc caaaatacta catgctgaac atatatttgt agctggcaaa
    18541 ggacgttcag gattcgtggc gaatagtttt gcaatgcgct taaatcagct cggcaaacag
    18601 gcacatgttg ttggagaatc aacgacacct gcgattaagt cgaatgatgt atttgtaatt
    18661 atctctggtt caggttccac ggaacattta agattattag cagacaaagc aaaatcagta
    18721 ggtgctgaca tcgtattaat tactacaaat aaagattctg caataggcaa tctagctggg
    18781 acgaacatcg ttttgcctgc aggtacaaaa tatgatgaac aaggctcggc acaaccatta
    18841 ggaagtttgt ttgaacaagc atctcaatta tttttagata gtgttgtaat gggattgatg
    18901 actgaaatga atgttacgga acaaacgatg caacaaaatc atgctaattt agaataaaat
    18961 aaagatagtc gataatatga tgcctaggca gaaatattat cgattatttt tttatttaaa
    19021 taataaatta tagtataata tcaataataa acgaataggg gtgttaatat tgaagtttga
    19081 caattatatt tttgattttg atggtacgtt ggcagacacg aaaaaatgtg gtgaagtagc
    19141 aacacaaagt gcatttaaag catgtggctt aacggaacca tcatctaaag aaataacgca
    19201 ttatatggga atacctattg aagaatcatt tttaaaatta gcagaccgac cattagatga
    19261 agcagcatta gcaaagttaa tcgatacatt tagacataca tatcaatcta ttgaaaagga
    19321 ctatatttat gaatttgcgg gtataactga agccattaca agtttgtata accaagggaa
    19381 aaaacttttc gtggtgtcta gtaagaagag tgatgtatta gaaagaaatt tatcggctat
    19441 tggattaaat cacttgatta ccgaagctgt tggatccgat caagtaagtg catataaacc
    19501 aaatcctgaa ggcatacaca caattgtgca acgctacaat ttaaatagcc aacaaacggt
    19561 gtatattggt gattcaacgt ttgatgttga gatggcacaa cgtgctggta tgcaatctgc
    19621 agctgtcact tggggtgcac atgatgcaag gtcattactt cattcaaatc cggattttat
    19681 tattaatgat ccatcagaaa ttaataccgt attataaaac ttgttaaaac agagaatacc
    19741 atggttaaaa tgcatattca taaatattag attatactta gaaatatttc gctttagatt
    19801 aggaatttaa aataaatatt tattaaacat tatgaatttt taaagagtaa tgtctgactc
    19861 gttgataatt tatttttgta aaaataaatt aaagtaatga caaagttatt gaagtaaatt
    19921 gagtataaac atttaaatac gatgtcgaaa atggcgatag catatcactt acatgaagtt
    19981 atgtgctatc gctattttta gttataattc caaaaagtta atcgttcgat gatttaagaa
    20041 ttattattgt ttaattcaaa tgtatgaggg tataaaatca ttgaatttaa ttcgataaag
    20101 cgaaattttt gaacaaacat acttttgtat ttatataaaa gtttaaattc ttataaattt
    20161 gacaaaacta attaactccg tataattatg aaacatacaa gagggagtgt atgaattcat
    20221 ggattttaat aaagagaata ttaacatggt ggatgcaaag aaagctaaaa aaaccgttgt
    20281 tgcaaccggt atcggtaatg caatggaatg gttcgatttt ggtgtctatg catatacaac
    20341 tgcgtacatt ggagcgaact tcttctctcc agtagagaat gcagacattc gacaaatgtt
    20401 gactttcgca gcattagcca ttgcgttttt attaagacca attggtggtg tcgtatttgg
    20461 tattattggt gacaaatatg gacgtaaagt tgtattaaca tctacaatta ttttaatggc
    20521 attttcaaca ttaaccattg gattattgcc aagctatgat caaattggac tttgggcacc
    20581 aatactatta ttgcttgcaa gagtactaca agggttttca acaggtggag agtatgcggg
    20641 ggcaatgaca tatgttgccg aatcatctcc agataagcgt cgtaactcat taggtagtgg
    20701 actagaaatt gggacattat caggttacat agctgcttca attatgattg ctgtattaac
    20761 attcttttta acagatgaac aaatggcatc atttggttgg agaatcccat tcttactcgg
    20821 tttattccta ggattattcg gcttatattt acgtcgtaag ctggaagaat caccagtttt
    20881 cgaaaatgat gttgcaacac aaccagaaag agataacatt aactttttac aaatcatcag
    20941 attttattac aaagatatat ttgtatgttt tgtagctgtt gtattcttca atgttacaaa
    21001 ctatatggta actgcatatt taccaaccta tttagaacaa gttattaaat tagatgcaac
    21061 gacaacaagt gtattaatta cttgtgtcat ggcaataatg attccattag cattaatgtt
    21121 tggtaagtta gcggataaaa taggtgaaaa gaaagtattt ctaattggta ctggtgggct
    21181 aacattattc agtatcatcg catttatgtt attacattca caatcatttg ttgtaatagt
    21241 aatcggtata tttatattag gatttttctt atcaacttac gaagcgacaa tgccagggtc
    21301 gttaccaacg atgttttaca gtcatataag atatcgaact ttatcagtaa catttaatat
    21361 ctctgtttcg atatttggtg gtacgacgcc attagttgca acatggttag ttacgaaaac
    21421 tggagatcca ttagcacctg cgtattattt aacagcaatc agtgttattg gctttttagt
    21481 tattacattc ttacatttaa gtacagcagg aaaatctcta aaaggttcgt atccaaatgt
    21541 agataacgag caagatagag cttattatgc agaacatcca aaagaagcat tatggtgggt
    21601 taaagaacgt aagaattaga gattttaata aaaagtataa atcaatcgta tataagcact
    21661 ttaaagctag taggttctgc taactttaaa gtgcttttta aattgagaac tgtaattagc
    21721 cgtaataaag tttttgtata tacataaacc cccactgcaa tgattatcgc aatgggggaa
    21781 agaggggact taaagcatat gtttagcttt gaatacttaa aattctcttg ctattgaaat
    21841 gttaggatgt aaatatgtct tagagtattt tgtccaacgc aattaatatt gagactctaa
    21901 ccttcaatat tattatagag aacacaaact taaatagatt gggtgactta tttgtgtcag
    21961 ttattgcgat tgcgataact tcttttctct atatacatat agtaacgtct tatctaataa
    22021 aaaacatggt actacagtat caaatttatc tagggcttaa gtttgatttt tataataggc
    22081 aggtttacct gataaaaata cttattcatt atataatgtt aacaatatgt attttaaagt
    22141 ttacattgag tgagggatat tgatgaacgt aattttagaa cagttgaaaa cacatactca
    22201 aaataaacct aatgacatag cattacatat cgatgatgaa acaattacat atagtcaact
    22261 aaatgcccgc atcactagcg cagttgaatc tttgcagaaa tattcactta accctgtcgt
    22321 tgctattaat atgaaatcac cggtgcaaag tattatttgt tatttagctt tgcatcgttt
    22381 acataaagtg cctatgatga tggaaggtaa atggcaaagt actatacatc gtcaattgat
    22441 tgaaaaatat ggtattaaag atgtaattgg agatacaggt ctcatgcaga atatagactc
    22501 accgatgttt attgattcaa cgcaattaca gcactacccc aatttattac atattggttt
    22561 tacttcaggg acaactggac tgccaaaagc atattatcgt gatgaagatt catggttggc
    22621 ttcttttgaa gttaatgaaa tgttgatgtt aaaaaatgaa aatgcaatag cagcccctgg
    22681 accactatcg cactcgttaa cattatatgc gttattgttt gctttaagtt ccggtcgtac
    22741 ttttatagga cagaccactt ttcatcctga aaagttactt aatcaatgtc ataaaatatc
    22801 atcatacaaa gttgctatgt ttcttgttcc aacgatgatt aaatcattat tgttagttta
    22861 caacaatgaa catacaatcc aatcattttt tagcagtgga gataagctgc attcttctat
    22921 ttttaaaaag ataaaaaatc aagcaaatga cataaatttg attgaatttt ttggtacatc
    22981 ggaaaccagt tttatcagct ataacttgaa tcagcaagca ccagttgaat cagtaggtgt
    23041 gctatttcca aatgtggaat tgaaaacaac gaatcacgat cacaatggta taggaactat
    23101 ttgtataaaa agtaatatga tgtttagtgg ctatgtaagt gaacaatgta taaataatga
    23161 tgaatggttt gttactaatg ataatggcta tgtaaaagag cagtatttat atttaacggg
    23221 acgtcaacag gatatgttaa ttattggtgg tcaaaatata tatccagcac atgttgaacg
    23281 ccttttaacg caatcttcga gcattgatga agcaattatc atcggtattc caaatgagcg
    23341 ttttggtcaa ataggcgtat tgctttattc tggtgatgtg acacttacac ataaaaatgt
    23401 aaaacaattt ttaaaaaaga aagtgaaacg ctatgaaatt ccatcgatga ttcatcatgt
    23461 agaaaagatg tattacactg caagtggtaa aattgctaga gaaaaaatga tgtcgatgta
    23521 tttgagaggt gaattataat atgaatcaag cagtcatagt tgcagctaaa cgaactgcat
    23581 ttgggaaata tggtggcact ttaaaacatt tagagccaga acaattgctt aaacctttat
    23641 tccaacattt taaagagaag tatccagagg taatatctaa aatagatgat gtagttttag
    23701 gtaatgttgt tgggaatggt ggcaatattg caagaaaagc attgcttgaa gcggggctta
    23761 aagattcaat acctggcgtc acaatcgatc ggcaatgtgg gtctggactt gaaagtgttc
    23821 aatatgcatg tcgcatgatc caagccggag ctggcaaggt atatattgca ggtggtgttg
    23881 aaagtacaag tcgagcacct tggaaaatca aacgaccgca ttctgtgtac gaaacagcat
    23941 tacctgagtt ttatgagcgt gcatcatttg cacctgaaat gagcgaccca tcaatgattc
    24001 aaggtgctga aaatgtggcc aagatgtatg atgtttcaag agaattacaa gatgaatttg
    24061 cttatcgaag tcatcaattg acagcggaaa atgtaaaaaa tggaaatatt tctcaggaaa
    24121 tattacctat aaccgttaaa ggagaaatat tcaacactga tgaaagtcta aaatcacata
    24181 ttccgaaaga taactttggc cgatttaagc ccgtgatcaa aggtgggacc gttaccgctg
    24241 cgaatagttg tatgaaaaat gatggtgcag ttttattgct tattatggaa aaagatatgg
    24301 catacgaatt aggtttcgag catggtttat tatttaaaga tggtgttacg gtaggtgttg
    24361 attctaattt tcctggcatt ggtccagtac cagccatttc caacttacta aaaagaaatc
    24421 aattaacgat agaaaatatt gaagtcattg aaattaacga agcgttcagt gcacaggtag
    24481 ttgcctgcca acaagcttta aatatttcaa atacgcaatt aaatatatgg ggtggtgcat
    24541 tagcatcagg tcatccatac ggtgcaagcg gtgcccaatt agtgactcga ttattttata
    24601 tgtttgacaa agagactatg attgcatcta tggggatagg gggaggtcta ggaaatgcag
    24661 cattatttac tcgattctaa ccagcgatta aatgtgtcat tttctaagga tagtgtggct
    24721 gcatattatc agtgttttaa ccaaccttat agaaaagaag taccaccatt aatgtgtgcg
    24781 tcattatggc caaaatttga tttatttaaa aaatatgcaa atagcgaact gattttaaca
    24841 aaatcagcaa ttaatcaaac tcaaaagata gaagtagaca caatatatgt agggcattta
    24901 gaagatattg aatgccgaca gactcgcaat atcacacgtt atacaatggc tttaacatta
    24961 actaaaaatg atcaacatgt cataacggtt acacaaactt ttattaaggc gatgaagtag
    25021 agatgaagtt taatgagata tggataaatg aatatttggc gctcgtaaat gatgataatc
    25081 caatacataa tgagattgtg ccaggacaat tagtgagtca aatgatgctg atggctatgt
    25141 cattagagac aaaccagtgt caaattaact acgttaaacc tattttaata aatgaaaata
    25201 tcgaattcat tgaacaacac gaacacgaaa ttatagcaat taatgacgat ggagagatta
    25261 aaataaaaat ttctttgagc acaaaaaaat aaccgatatt agctgcatga acgcatatta
    25321 attaggagat gaaaggacag ctaatatcag ttatgtattg ttattattat tgggaacaga
    25381 gatgaatata ggttacgttt ctttctttgc acggggatgc attaatctaa aataataata
    25441 acaactatat caatgtttaa taaattctgg attattggaa cgattagtca atttaactaa
    25501 ctttcatatg atctatatcg tcttgtaata aagagagcaa tttgaatatt tcagtatcac
    25561 taaatgaatc gtcacattta attgaaacat gctgaaacgt tttggttata atttcataaa
    25621 ctggtgcgcc ttcatggtga tactgtcgat aaataatcat aacctatatt acctcctttg
    25681 ctactctatg gttatattat aaataacatt tttatgtgtg acatcaacct taagtatcaa
    25741 ctttttatca gacatagaac gtatgattta ctaagactat ttatgtataa aagttctaaa
    25801 taaatatata tttatagagt cgcctggcag tcatttggga aatataacat atatgattag
    25861 agaggcatct atcgcaaaag aatgataatg atagaggtat tgagcatata gatgagttta
    25921 agttcatctt gaaaataaag ggttatttag tcatagatgt agatgtatag gaaatatttg
    25981 tatgtattgt tcgatatgta tgaaattttc aataaaagct aataacgctt atatgtaact
    26041 ttcaaattta aattatatac agagcatgat gattataaaa aaataaccac atcacataaa
    26101 ttgagttcat acccaattta agtggtgtgg ctaataatgt tgatttatag atgaaccgcc
    26161 taatcgttaa acctctgtta cttcaacatc gatatgttca atacggttgt atgcaccgtg
    26221 atccacagga ccaacaaaat cattcatttt ccaaccgttt ttaatagcag aagcgacgaa
    26281 agctttcgcg ctaatcacag cttctttcgg tgacttaccg ttagctaaat atgcagttgt
    26341 tgccgcagca aatgtacaac cagcaccatg gttataactt tgttggaaca tgtctgttgt
    26401 tagttgataa aatgtttgac catcatagta taagtcatac gatttatctt gatctaaagc
    26461 tttgccacct ttaatgatga catgctgtgc gcctttatca aagataattg ttgcagcctt
    26521 tttcatatct tcaattgaat ttaatttacc taatcctgat aattgacccg cttcaaataa
    26581 gtttggtgtc actaccgttg ctttaggtag taaatattta atcatcgcct cagtatttcc
    26641 aggattaagc acttcatctt cgcctttaca aaccatgaca ggatctacta caaaatattg
    26701 tgcattagat gcctcatata cttctccagc acgtttgatt atctcctcag tacctaacat
    26761 acctgtttta atagcatcag gtccgattga taaagccgtt tcaagttgtt tttcaaatac
    26821 atccattggt aatggtgtaa catcgtgtga ccatgtatct ttatccatag taacgatggc
    26881 agttaaagcg accatgccat acgtatctaa ttcttggaac gttttcaaat ctgcttgcat
    26941 acctgcgcca gcacttgtgt cagaaccggc aattgttaaa actttcttta aagccattga
    27001 gcttcactcc tacataataa tattgtattc atcatatcat ttttaaccta attgaaaaat
    27061 attaagcatt caatatttga tgattgttga aatgaatcat tcatactatt gtaacttttg
    27121 aaaatgtcat tcactttaga taagtgtgat atgttaaaat atgtcctgag gtgagattga
    27181 atggaatggt cgcaaatttt tcatgacata acaacgaaac atgactttaa agctatgcat
    27241 gattttttag aaaaagaata ttcgactgca atcgtatacc ctgataggga aaatatatat
    27301 caagcgtttg atttaacacc gtttgaaaat atcaaagttg ttatattagg acaagacccg
    27361 tatcatggtc caaaccaagc acatggatta gcattttcag tgcaacctaa cgcaaaattc
    27421 cctccatctt tacgtaatat gtataaagaa ttagcagatg atattggatg cgttagacaa
    27481 acaccgcatt tacaagattg ggcaagagaa ggcgtcttgt tattgaatac agttttaacc
    27541 gtaagacagg gtgaagcaaa ttctcatcgt gatattggtt gggaaacatt tactgatgaa
    27601 attattaaag cagtgtctga ttataaagaa catgttgtct ttattttgtg ggggaaacct
    27661 gcacagcaaa aaataaagct tatcgataca tctaaacatt gtattataaa atcagtgcat
    27721 cctagtccac tgtctgcata tagaggattc tttggatcaa aaccgtattc caaagcgaat
    27781 gcctatttag agtcagtagg aaaatcacca attaattggt gtgaaagtga ggcgtagatg
    27841 ttgaatagag aaactttaat agcacgaatt gagcaagaat tagtacaagc agagcaggca
    27901 cagcatgacc atgactttga aaaacatatg tatgccatac atatattaac atctttatat
    27961 gcttcaacat caaatacacc acatattggt gaacaacaaa tgaatcgtcg tattgctaac
    28021 cataatcaaa tgccacaatc acaaataacg cagccaactc atcaagtgac agttgctgaa
    28081 attgaagcga tgggtggtaa agtaaatacg cattcagcac atcatcataa taagtcatat
    28141 tcacaacctt caaaccaaca acaaagatta gcgacagatg atgacattgg caatggtgaa
    28201 tccatatttg atttttaaaa agcaacaatg aaacataatt acttaatagc ttgttaagta
    28261 tgtaggttaa taatcaagac gcatatactt ttattcgagt gttcggattt aaacatttat
    28321 taatactgaa ttatataagg agaggtagca atgaaattat ttattatttt aggtgcatta
    28381 aacgcgatga tggctgtcgg tacaggtgca tttggtgcgc atggtttaca aggaaaaata
    28441 agtgatcact atttatcagt atgggaaaaa gcaacgacgt atcaaatgta ccatggctta
    28501 gcattattaa ttataggtgt aattagtggt acaacttcaa tcaatgttaa ctgggctggc
    28561 tggttaatat ttgctggtat tattttcttt agtggatcat tatatatttt agtattaact
    28621 caaattaaag ttttaggtgc gattacgcca attggtggcg tattgttcat cattggatgg
    28681 ataatgttaa tcattgcgac attcaaattt gctggttaaa ttttaaaact ttagattacc
    28741 tatgtaacta aacattaaat ttttaataaa aataatcaag aaaaagagtt acaaactcat
    28801 cttttgggta tagaatacct tcgaggtgag tttttattta tggaaaaaaa gaataagcaa
    28861 atagatagag gcgatttaaa acaaaaccta tctgaaaagt ttgtatgggc gattgcatat
    28921 ggttcatgta tcggatgggg cgcattcatc ttaccaggag actggattaa gcagtcaggt
    28981 ccgattgcag catcaattgg tatagttatt ggtgcattat taatgatatt aattgcggtt
    29041 agttatggcg cattagtaga gagatttcca gtatcagggg gcgcgtttgc ctttagtttc
    29101 ttaagtttcg gcagatatgt gagtttcttc tcatcatggt ttttaacttt tggttatgtc
    29161 tgtgtcgttg ctttaaatgc gaccgcattc agtttactag ttaaattctt attgccagat
    29221 gtcttaaata atgggaaact atacaccatt gcgggctggg acgtttatat tacggaaatc
    29281 attattgcga ccgtattact acttgtattc atgctagtaa cgattcgtgg cgcaagtgta
    29341 tctggatcat tacaatatta tttctgtgtg gcgatggtaa tcgtcgtatt attgatgttc
    29401 tttggttcat tctttggtaa taattttgca cttgaaaatt tacaaccgtt agctgaacct
    29461 agcaaaggat ggttagtgtc tattgtggtt attgtatccg tggcaccatg ggcatatgtt
    29521 ggatttgata atattccaca aacagcagaa gagtttaact ttgcaccaaa caagacattt
    29581 aagcttatcg tgtacagttt attagcagca tcattaactt atgttgtcat gattttatac
    29641 actggttggt tatcaacaag tcatcaaagt ttaaatgggc agttgtggtt aacaggtgct
    29701 gttacacaaa cagcatttgg ttatattgga ttaggtgtat tagcaattgc aattatgatg
    29761 ggtatattta ctggtttaaa tggattcttg atgagttcaa gtcgcttgtt attttctatg
    29821 ggacgttcag gtattatgcc aacaatgttt agtaaattac atagtaaata caaaacacca
    29881 tatgtcgcaa tcatattcct agtaggagtg tcgttaattg caccttggct aggaagaact
    29941 gcattgactt ggattgtaga tatgtcatct actggtgtat ccattgccta ctttattaca
    30001 tgtttgtctg cagcgaaatt attcagttat aacaaacaaa gtaatacgta tgcaccggtt
    30061 tacaaaacgt ttgctattat cggctcattt gtatcattca ttttcttagc gttgttatta
    30121 gtgccaggtt ctcctgcagc actgactgca ccgtcttata ttgcattact tggatggtta
    30181 atcatcggtt taatattctt tgtgattcga tatcctaaat tgaaaaatat ggataatgat
    30241 gaattaagtc gcttgatttt aaatagaagt gaaaatgaag ttgatgatat gattgaagaa
    30301 cctgaaaaag aaaaaactaa ataataaaag aatcgcacaa taaaccttct tcattcggag
    30361 gcgtatcgtg cgattttttg tattataaat tgacatttaa gacgaggcag ctgaacctta
    30421 tatataattg ctaagagtta gggctgagcc atttctaaca aatatttata atcgtttaaa
    30481 agatttcacg aacccagaaa caattaattt ggaaatttgg tcggcgaata ataaacctaa
    30541 tgcgatggcg cctgcaataa gtgtaacctc tagcatggta ttgattgctg tactgaaatt
    30601 taataagact aaattttttg tagcatcgta tgctaagcca ccaggtacta atggaatgat
    30661 acccgttacc ataaaaatga tggcaggttc tttttgttta cgagccatat aatgacttaa
    30721 caagcctaat gctaaactac caaagaaact agagtatata gtgtgcacat taaagccgtt
    30781 gaagaataag gtgtaaacca tccatccaca cgtaccaacg aaaccacatg atagatataa
    30841 ttttctaggt gcatcaaaaa tgacgcagaa gaacattgaa gctaaaaagc taaagataaa
    30901 gtttaagatc caaaacatag tctgatactc ctatactaaa attaatacgc taccaacgcc
    30961 agcaccgatg ccaaacgcag taaccaatgc ttctaatgat ttcgttgtga acatcaacat
    31021 gtgtccacca aataaatctt gtattgcgtt tgttattaat acaccaggaa caataggcat
    31081 gactgccgca atgataatag ttgccaagtc acctgttgga ataagtgtat gtccaataac
    31141 ggcgataatc ccaataacta atgaaccaat gaattctggg ataaactgtg cgtgtaactt
    31201 acgatctaaa atctcagtga ctaggtatcc tagactacct gctaatatcg cagttaaaac
    31261 atcaatcaat ctaccacctt gtaaatataa gaaactcatt gcaatcattg ctgcagcaaa
    31321 acctttaaag ggaagactgc tgtcacgctt agcaacatat attttttcaa gttgcgtttt
    31381 tgcttcggct aaagaaattt cattgtttgt aatttgacgc gaaattttat tagcttgaga
    31441 aatttttatt aagtttgtat ctcgagaggt aattctaaat attctaggaa acgattccga
    31501 atgtaacgta aactggatga cagtgtttgt aacaaagctg ttactttcac tgtaaccaag
    31561 tttttttgca atacgtgtca tggtatcttc tacacgcgta ccttctgcac cagattctaa
    31621 tagtatgcga gcagcaagca tgacaacgtc tttgataagt acctcttgtt tgtattcttc
    31681 tgaatttatg tccatttcat caccattgtt tataagaatt taatactcat tatagtttat
    31741 acactataaa ataaccacat gagctttttg ataagttgtt attgat
//
LOCUS       DAMQWL010000017        31297 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.017, whole genome shotgun sequence.
ACCESSION   DAMQWL010000017 DAMQWL010000000
VERSION     DAMQWL010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 31297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31297
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.017"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            249..5594
                     /locus_tag="PF788_000736"
     CDS             249..5594
                     /locus_tag="PF788_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KxYKxGKxW signal peptide domain-containing
                     protein"
                     /protein_id="HDG6303014.1"
                     /translation="MSKRQKAFHDSLANEKTRVRLYKSGKNWVKSGIKEIEMFKIMGL
                     PFISHSLVSQDNQSISKKMTGYGLKTTAVIGGAFTVNMLHDQQAFAASDAPLTSELNT
                     QSETVGNQNSTTIEASTSTADSTSVTKNSSSVQTSNSDTVSSEKSEKVTSTTNSTSNQ
                     QEKLTSTSESTSSKNTTSSSDTKSVASTSSTEQPINTSTNQSTASNNTSQSTTPSSVN
                     LNKTSTTSTSTAPVKLRTFSRLAMSTFASAATTTAVTANTITVNKDNLKQYMTTSGNA
                     TYDQSTGIVTLTQDAYSQKGAITLGTRIDSNKSFHFSGKVNLGNKYEGHGNGGDGIGF
                     AFSPGVLGETGLNGAAVGIGGLSNAFGFKLDTYHNTSKPNSAAKANADPSNVAGGGAF
                     GAFVTTDSYGVATTYTSSSTADNAAKLNVQPTNNTFQDFDINYNGDTKVMTVKYAGQT
                     WTRNISDWIAKSGTTNFSLSMTASTGGATNLQQVQFGTFEYTESAVTQVRYVDVTTGK
                     DIIPPKTYSGNVDQVVTIDNQQSALTAKGYNYTSVDSSYASTYNDTNKTVKMTNAGQS
                     VTYYFTDVKAPTVTVGNQTIEVGKTMNPIVLTTTDNGTGTVTNTVTGLPSGLSYDSAT
                     NSIIGTPTKIGQSTVTVVSTDQANNKSTTTFTINVVDTTAPTVTPIGDQSSEVYSPIS
                     PIKIATQDNSGNAVTNTVTGLPSGLTFDSTNNTISGTPTNIGTSTISIVSTDASGNKT
                     TTTFKYEVTRNSMSDSVSTSGSTQQSQSVSTSKADSQSASTSTSGSIVVSTSASTSKS
                     TSVSLSDSVSASKSLSTSESNSVSSSTSTSLVNSQSVSSSMSDSASKSTSLSDSISNS
                     SSTEKSESLSTSTSDSLRTSTSLSDSLSMSTSGSLSKSQSLSTSISGSSSTSASLSDS
                     TSNAISTSTSLSESASTSDSISISNSIANSQSASTSKSDSQSTSISLSTSDSKSMSTS
                     ESLSDSTSTSGSVSGSLSIAASQSVSTSTSDSMSTSEIVSDSISTSGSLSASDSKSMS
                     VSSSMSTSQSGSTSESLSDSQSTSDSDSKSLSQSTSQSGSTSTSTSTSASVRTSESQS
                     TSGSMSASQSDSTSTSLSDSQSTSRSTSASGSASTSTSTSDSRSTSASTSTSMRTSTS
                     DSQSMSLSTSTSTSMSDSTSLSDSVSDSTSDSTSASTSGSMSVSISLSDSTSTSTSAS
                     EVMSASISDSQSMSESVNDSESVSESNSESDSKSMSGSTSVSDSGSLSVSTSLRKSES
                     VSESSSLSCSQSMSDSVSTSDSSSLSVSTSLRSSESVSESDSLSDSKSTSGSTSTSTS
                     GSLSTSTSLSGSESVSESTSLSDSISMSDSTSTSDSDSLSGSISLSGSTSLSTSDSLS
                     DSKSLSSSQSMSGSESTSTSVSDSQSSSTSNSQFDSMSISASESDSMSTSDSSSISGS
                     NSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSTSVSDSSSTSTSTSLSDSMSQSQSTS
                     TSASGSLSTSISTSMSMSASTSSSQSTSVSTSLSTSDSISDSTSISISGSQSTVESES
                     TSDSTSISDSESLSTSDSDSTSTSTSDSTSGSTSTSISESLSTSGSGSTSVSDSTSMS
                     ESNSSSVSMSQDKSDSTSISDSESVSTSTSTSLSTSDSTSTSESLSTSMSGSQSISDS
                     TSTSMSGSTSTSESNSMHPSDSMSMHHTHSTSTSRLSSEATTSTSESQSTLSATSEVT
                     KHNGTPAQSEKRLPDTGDSIKQNGLLGGVMTLLVGLGLMKRKKKKDENDQDDSQA"
     gene            5724..6935
                     /gene="secY2"
                     /locus_tag="PF788_000737"
     CDS             5724..6935
                     /gene="secY2"
                     /locus_tag="PF788_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein translocase subunit
                     SecY2"
                     /protein_id="HDG6303015.1"
                     /translation="MLKLLQQYEYKIIYKRMLYTCFILFIYILGTNISIVSYNDMQVK
                     HESFFKIAISNMGGDVNTLNIFTLGLGPWLTSMIILMLISYRNMDKYMKQTSLEKHYK
                     ERILTLILSVIQSYFVIHEYVSKERVHQDNIYLTILILVTGTMLLVWLADKNSRYGIA
                     GPMPIVMVSIIKSMMHQKMEYIDASHIVIALLIILVIITLFILLFIELVEVRIPYIDL
                     MNVSATNMKSYLSWKVNPAGSITLMMSISAFVFLKSGIHFILSMFNKSISDDMPMLTF
                     DSPVGISVYLVIQMLLGYFLSRFLINTKQKSKDFLKSGNYFSGVKPGKDTERYLNYQA
                     RRVCWFGLALVTVIIGIPLYFTLFVPHLSTEIYFSVQLIVLVYISINIAETIRTYLYF
                     DKYKPFLNQYW"
     gene            6946..8499
                     /gene="asp1"
                     /locus_tag="PF788_000738"
     CDS             6946..8499
                     /gene="asp1"
                     /locus_tag="PF788_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp1"
                     /protein_id="HDG6303016.1"
                     /translation="MKYFIPAWYDDQRWWQDTTVPYYQLQNKTEFDDMISLMGMHLEN
                     DLDYQLIVLNHAPNLRTFLHRYDLYETKYSSVFDEIQGFSHHAPQAINYHHLKWPDDV
                     EFVYTPYLLKCVTSEQTYTNIYFSQEGYSIWFEEFERDQLQRRYIFDDRGYLSAIRYF
                     DDQGEASYQEYLTINGDCVLHEDLKNGRVTVSKRYQHHYQQTEYNNMAQLIEEKFQAM
                     IAQQIHEDDHVIVASDARHNRQIANHIPAKSLSYSFFKNRNETVSDEEYQSIVKNAHL
                     IVDSVQLERDLISHQEKYQRENTMIRITPFETRQSPNISSQLMETFIGVWIDGMSDAD
                     LQQMMQRLVDYIAQEDYYRLILLSRHQNDIPMWLRECITSVNEEYQAKQNADVNVSAL
                     MTPEDQDDIIAVKTIHAEHDVVEALRTLRLVIDMSKEPDLYLQISAISAGIPQINGQQ
                     TDYVSDYDNGRIINTVDELDDALNYYLFYLKNWNYAYAYSLKLIDAYASKNIINQLDE
                     LIEGENDAT"
     gene            8489..10057
                     /gene="asp2"
                     /locus_tag="PF788_000739"
     CDS             8489..10057
                     /gene="asp2"
                     /locus_tag="PF788_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp2"
                     /protein_id="HDG6303017.1"
                     /translation="MPRKFRVLQIGGDDLEPIFQHKKGVSWDYFDIGLFEFDSGYVEA
                     IEAIVEAEGRFDFIYIQAPYSETLTNLLQMISEPYNTYVDESFWSVEYEQDENVQKYV
                     VQPLHYRNIEERNNKLEAVSFSGQYGDKVSPKLALVHPNFKGDVVYQGNSELTLSGEF
                     GKEFKPIASWQNNLVYDKDKVIQIWPEFDIDGAVELQYTFRLIQTGADGALIEQIVLT
                     DDMLDSPLEIPAKPFDAYISVTVKARGNGTVHLGPIHKRWSRLDMGQFLLGGSRFVDS
                     QRQEFIYYFHPGDMKPPLNVYFSGYRTAEGFEGYYMMKRMNAPFLLIGDPRVEGGSFY
                     IGSSEYEQGIINVIDETLEKLNFKSHELILSGLSMGSFGALYYGAQLNPQAIIVGKPL
                     VNIGTIAEHMRLLRPEEFGTALDVLVSNEGDTSQASIQALNQKFWQTFQKKSLSQTVF
                     AIAYMQHDDYDPHAFQELLPVLTAHQARVMNRSIPGRHNDDSPTIASWFVNFYNIILE
                     DKFGRVQHAEKQNI"
     gene            10035..10994
                     /gene="asp3"
                     /locus_tag="PF788_000740"
     CDS             10035..10994
                     /gene="asp3"
                     /locus_tag="PF788_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp3"
                     /protein_id="HDG6303018.1"
                     /translation="MLKNKTFKVTWNYISQTTFMYGSKVSFSNGEVTFINPLMPSGLP
                     IHEWLMLKQFSKYKSAPSLPILRRGQHYKLHFDFDATPAGSVYFIIIFYNKNGTKLST
                     EIVKSNSITIQYPDEAYAYKIKMMNAASTSLIFRCLTITEMTHQYDLEYKSMRVTKIG
                     DDQYGNDMINVIIAEPSDTYPTISNDFLKLFGHVWLVERWMDDNIEGNIKQLKNDLQS
                     QDTLKAINLISYGSKSNVFATYVAQHLGCKVYRTSHEDDDLKGWLTEHVPGNHELKDT
                     NVEVYFKEEQDKHLNYMSRLMNPVRFLDYLDVSKLNGGEVNET"
     gene            10984..13374
                     /gene="secA2"
                     /locus_tag="PF788_000741"
     CDS             10984..13374
                     /gene="secA2"
                     /locus_tag="PF788_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system translocase SecA2"
                     /protein_id="HDG6303019.1"
                     /translation="MKHKLDVTINELRLKSIRKIVKRINTWSDEVKSYSDDALKQKTI
                     EFKERLASGVDTLDTLLPEAYAVAREASWRVLGMYPKEVQLIGAIVLHEGNIAEMQTG
                     EGKTLTATMPLYLNALSGKGTYLITTNDYLAKRDFEEMQPLYEWLGLTASLGFVDIVD
                     YEYQKGEKRNIYEHDIIYTTNGRLGFDYLIDNLADSAEGKFLPQLNYGIIDEVDSIIL
                     DAAQTPLVISGAPRLQSNLFHIVKEFVDTLIEDVHFKMKKTKKEIWLLNQGIEAAQSY
                     FNVEDLYSEQAMVLVRNINLALRAQYLFESNVDYFVYNGDIVLIDRITGRMLPGTKLQ
                     AGLHQAIEAKEGMEVSTDKSVMATITFQNLFKLFESFSGMTATGKLGESEFFDLYSKI
                     VVQVPTDKAIQRIDEPDKVFRSVDEKNIAMIHDIVELHETGRPVLLITRTAEAAEYFS
                     KVLFQMDIPNNLLIAQNVAKEAQMIAEAGQIGSMTVATSMAGRGTDIKLGEGVEALGG
                     LAVIIHEHMENSRVDRQLRGRSGRQGDPGSSCIYISLDDYLVKRWSDSNLAENNQLYS
                     LDAQRLSQSNLFNRKVKQIVVKAQRISEEQGVKAREMANEFEKSISIQRDLVYEERNR
                     VLEIDDAENQDFKALAKDVFEMFVNEEKVLTKSRVVEYIYQNLSFQFNKDVACVNFKD
                     KQAVVTFLLEQFEKQLALNRKNMQSAYYYNIFVQKVFLKAIDSCWLEQVDYLQQLKAS
                     VNQRQNGQRNAIFEYHRVALDSFEVMTRNIKKRMVKNICQSMITFDKEGMPVIHFP"
     gene            13392..14900
                     /gene="gtfA"
                     /locus_tag="PF788_000742"
     CDS             13392..14900
                     /gene="gtfA"
                     /locus_tag="PF788_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system glycosyltransferase GtfA"
                     /protein_id="HDG6303020.1"
                     /translation="MTIYNINFGIGWASSGVEYAQAYRAKLLRRTNQDTKFVFLDFIQ
                     SENIQTLTQNIGFKDQEVIWLYQYFSDISLAPTTYTLDDIERELGHDISFRERNGKIV
                     RLYFNGKSSFVTCYLQNEQKDIVDRAEFVINSMLVRKDFYSYTRIFSEYYAPADNKAK
                     LYMRQFYNQDGSIAYNEYIDGDSSIYVFEDAVLYNKTEFIAYFLQRLNLTRDDIVILD
                     RASDIGQAVLQHKGDSKVGVVIHADHYSNNMMSEQHILWNNYYEYQFSKAKYIDFFIT
                     ATDIQNHMVCRQFEQYQGYRPRVYTIPVGSIDALSYPTLSRKPYAMISASRLANEKHI
                     DWLVKAVIVAKRQVPELTFDIYGEGSEKTRLRKIIDTHRAQDYIRLLGHVKLDEIYND
                     YELFLSASTSEGFGLTLMEAVGSGLGMIGLNVNYGNPTFIRDGENGYLVPFDTDEDSV
                     DDVIAKLAHAIVMYFNNGPQTPHDISYEVAQQFMTQDIILKWETLVQEVLHD"
     gene            14893..16251
                     /gene="gtfB"
                     /locus_tag="PF788_000743"
     CDS             14893..16251
                     /gene="gtfB"
                     /locus_tag="PF788_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system glycosylation chaperone
                     GtfB"
                     /protein_id="HDG6303021.1"
                     /translation="MIKLFDYFNDHSRKLYESFKASKLEEDLTIVLNDNGFLPDDVIS
                     PYQFFADNHNTENMKPRFFNQVTVPAFWEIKGNNNSATINDMGRLRGKIFYQSGERPR
                     IVSRVEWFDDQQRVRFVDYYSKNGIKFAQTVYDLNRKAILKKYMTAEGKEVIYENFVT
                     SDVILDWQGKSYFFPSKLAFALFFIKQLEITEHHFVINSLALPFSVLYNLPSKGSDVL
                     VWQEHCNGNVPGNMQLMCKGDMKRHCNIIIPDKNEYETMLNIADAKVQSRILQGGYLY
                     NYRSRNRYTKEIVILTNSDQLRNIKVLVETLPDFKFHIAAITEMSDKLMQLDQYANVH
                     LYPSINIDRVNELYQLCDIYLDINEGNEILNAVEQAFDYELLILGYRQTAHHAKVTLS
                     EHLFEHNDEITMESKDQLIQMLESLKDQQQFRDALLAQKAHAHEISREQFEQVFKQAL
                     ES"
     gene            16493..18400
                     /gene="sasF"
                     /locus_tag="PF788_000744"
     CDS             16493..18400
                     /gene="sasF"
                     /locus_tag="PF788_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-wall-anchored protein SasF"
                     /protein_id="HDG6303022.1"
                     /translation="MAKYRGKPFQLYVKLSCSTMMATSIILTNILPYDAQAASEKDTE
                     ITKEILSKQDLLDKVDKAIRQIEQLKQLSASSKEHYKAQLNEAKTASQIDEIIKRANE
                     LDSKDNKSSHTEMNGQSDIDSKLDQLLKDLNEVSSNVDRGQQSGEDDLNAMKNDMSQT
                     ATTKHGEKDDKNDEAMVNKALEDLDHLNQQIHKSKDASKDTSEDPAVSTTDNNHEVAK
                     TPNNDGSGHVVLNKFLSNEENQSHSNRLTDKLQGSDKINHAMIEKLAKSNASTQHYTY
                     HKLNTLQSLDQRIANTQLPKNQKSDLMSEVNKTKERIKSQRNIILEELARTDDKKYAT
                     QSILESIFNKDEAVKILKDIRVDGKTDQQIADQITRHIDQLSLTTSDDLLTSLIDQSQ
                     DKSLLISQILQTKLGKAEADKLAKDWTNKGLSNRQIVDQLKKHFASTGDTSSDDILKA
                     ILNNAKDKKQAIETILATRIERQKAKLLADLITKIETDQNKIFNLVKSALNGKADDLL
                     NLQKRLNQTKKDIDYILSPIVNRPSLLDRLNKNGKTTDLNKLANLMNQGSDLLDSIPD
                     IPTPKPEKTLTLGKGNGLLSGLLNADGNVSLPKAGETIKEHWLPISVIVGAMGVLMIW
                     LSRRNKLKNKA"
     gene            18568..19128
                     /locus_tag="PF788_000745"
     CDS             18568..19128
                     /locus_tag="PF788_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDG6303023.1"
                     /translation="MSRKTALLVLDMQEGIASSVPRIKNIIKANQRAIEAARQHRIPV
                     IFIRLVLDKHFNDVSSSNKVFSTIKAQGYAITEADASTRILEDLAPLEDEPIISKRRF
                     SAFTGSYLEVYLRANDINHLVLTGVSTSGAVLSTALESVDKDYYITVLEDAVGDRSDD
                     KHDFIIEQILSRSCDIESVESWKSSL"
     gene            complement(19395..21254)
                     /locus_tag="PF788_000746"
     CDS             complement(19395..21254)
                     /locus_tag="PF788_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase domain-containing protein"
                     /protein_id="HDG6303024.1"
                     /translation="MPKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSK
                     KSNDDETSKDTTSKDIDKADKNNTSNQDNNDKKFKTIDDSTSDSNNIIDFIYKNLPQT
                     NINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSDNSIKND
                     TDTQSSKQDKADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSS
                     KDNQSMSDSALDSILDQYSEDAKKAQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKS
                     KPAQSFNNDVNQKDTRATSLFETDPSISNNDDSGQFNVVDSKDTRQFVKSIAKDAHRI
                     GQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEGNSVPFNTLEADGNQL
                     YSINAGFRKYPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYA
                     TDPNYAKKLNSIIKHYQLTQFDDERMPDLDKYERSIKDYDDSSDEFKPFREVSDSMPY
                     PHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQYRDYQVSHTPKRHAAVVFEAGQF
                     GADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINAAAAEELSYITGK"
     gene            21465..24446
                     /locus_tag="PF788_000747"
     CDS             21465..24446
                     /locus_tag="PF788_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HDG6303025.1"
                     /translation="MKNAFKLFKMDLKKVAKTPAVWIILAGLAILPSFYAWFNLWAMW
                     DPYGNTGHIKVAVVNEDKGDTIRGKKVNVGNTMVNTLKKNKSFDWQFVSREKADHEIK
                     MGKYFAGIYIPSKFTHEITGTLRKQPQKADVEFKVNQKINAVASKLTDTGSSVVVEKA
                     NEQFNKTVTRALLEEANKAGLTIEENVPTINKIKNAVYSADKALPKINDFANKIVYLN
                     NHQADLDKYANDFRKLGNYKGDILDAQKKLNEVNGAIPQLNEKAKLILALNNYMPKIE
                     KALNFAADDVPAQFPKINQGLNIASQGIDQANGQLNDAKGFVTQVRSRVGDYQDAIRR
                     AQDLNRRNQQQIPQNSAANNETSNSAPAAGNGVASTPPSAPSGDTAPNNNVTQNTAPN
                     SNNAPVSTTPQSTSGKKDGQSFVDITTTQVSTANENTQNITDKDVKSMEAALTGSLLS
                     LSNNLDTQAKAAQKDSQALRNISYGILASDKPSDFRESLDNVKSGLEYTTQYNQQFID
                     TLKEIEKNENVDLSKEIDKVKAANNRINESLRLVNQLSNALKNGSSGTAEATKLLDQL
                     SKLDSSLSSFRDYVKKDLNSSLVSISQRIMDELNKGQTALSNVQSKLNTIDQVINSGQ
                     AILKNGKTRIDRLQTVLPSIEQQYISAVKNAQANFSKVKSDVAKAANFVRNDLPQLEQ
                     RLTNATASVNKNLPTLLNGYDQAVGLLNKNQPQAKKALSDLADFSQNKLPDVEKDLKK
                     ANKIFKKLDKDDAVDKLIDTLKNDLKKQAGIIANPINKKTVDVFPVKDYGSGMTPFYT
                     ALSVWVGALLMVSLLTVDNKHKSLESVLTTRQVFLGKAGFFIMLGMLQALIVSVGDLL
                     ILKAGVESPVLFVLITIFCSIIFNSIVYTCVSLLGNPGKAIAIVLLVLQIAGGGGTFP
                     IQTTPQFFQNISPYLPFTYAIDSLRETVGGIVPEILITKLIILTLFGIGFFVVGLILK
                     PVTDPLMKRVSEKVDQSNVTE"
     gene            complement(24558..25496)
                     /gene="manA"
                     /locus_tag="PF788_000748"
     CDS             complement(24558..25496)
                     /gene="manA"
                     /locus_tag="PF788_000748"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HDG6303026.1"
                     /translation="MALFLQPVFKDRIWGGHALKAFNYDIPNETTGECWAISAHPNGP
                     NTIINGPYKDMTLDQLWSQHRELFDNDSRDSFPLLTKVLDANDKLSVQVHPDDDYALK
                     HEGELGKTECWYILDAAPGAEIIYGVHAHNKQTLIDMIDNHEFDSLFKRIPVKPGDFY
                     YVPAGTVHAIGSGILILETQQSSDTTYRIYDYDRRDQNGQLRDLHLEQSKDVIELGNH
                     EPNTTPITTHIDTHTVTQFVDNQYFAVYKWDIHGDLKFNKPHAYCLVTIIDGTGTLTV
                     NDKHYDIQKGSSFILTTEDEDIHFVGNISAIVSHPG"
     gene            complement(25510..27462)
                     /locus_tag="PF788_000749"
     CDS             complement(25510..27462)
                     /locus_tag="PF788_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIABC"
                     /protein_id="HDG6303027.1"
                     /translation="MKIVAITSCPNGIAHTYMAQEKLEQVAKEMGVDIKVETQGGVGA
                     ENVLTTQDIEEADGVIIAADKQVDLSRFVGKRLINENVREGIHNPRGLIQRIINQDAP
                     IYQSETNYHSKDRGKSKSGIQMVYQHLMNGVSFMVPFIVVGGLLIAIALTLGGETTSK
                     GLVIPDDSFWKSIENIGSLAFKFMVPILAGYIAVSIADKPGLVPGMIGGAIAADGSFY
                     GSDAGAGFLGGIVAGFLAGYIAKWIKDIKVPKAMAPIMPIIIIPIISSVVVGLIFIFL
                     IGAPISNIFEALTTWLKSMQGANIIILAMIIGAMIAFDMGGPVNKVAFLFGSALIAEG
                     NYAVMGMVAVAVCTPPIGLGLATFVQKYKFNHSEREMGKASFTMGLFGITEGAIPFAA
                     QDPLRIIPANIIGAMIASVIAAIGGVGDRVAHGGPIVAVLGGIDHVLWFIFAVIVGSL
                     VTMTTVLLLKRNTPVIAVDAPAQHTQLHDTDITQHDTEVDNVDNTAKHSHLNKPSHVF
                     DQQTMIITDHDMSRNEAIDMLIHKLKICRYVEHTSHLKNAILEREMGSTTAIGMNVAI
                     PHAKSDVVKQPIVAVMKNNHGVKWDSLDGSLPQLIFLIAVPNNSQDTHLKILQRLSKA
                     LMNDETRQSLINANSTTEIYNLLMKI"
     gene            complement(27539..29413)
                     /locus_tag="PF788_000750"
     CDS             complement(27539..29413)
                     /locus_tag="PF788_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HDG6303028.1"
                     /translation="MLDRHLKLLQFFIKNPSKHISSNEIAKHVNVSNRTVRNDIHVIN
                     SNFMDDIIVSIKSKGYQLNTSQYTLETITERYTHIQSYKEKLLLSMAYQLLMHNKSQT
                     LQQLEQDYLLSKTVLNDYFVRIQQWCQKFNIALTIKKKQGIVVDGTDNDITNAIIHLN
                     QLSSGHVHVEDLILNELPDSHQRMISHIIQETLQQHSIETTDIQIQQLLIHLILIIKR
                     KQSLSELDTLNHDSKLISQSCIKQINERLGYDLNEKVINMFSFFIAYHFNKLDIGIER
                     IFIQSYIDRLIELMQQRIHVPFNEDSILQQNLYNHFSKAYLRITQNIYLNNPLVIEIK
                     KLYPFVFNTLFEAIDKLAIDTDIEMSEDEIVFLTIHFQAAIERRTKTQLNVVIACYYG
                     LGVSNFLETKINNLSEELSVINTIKLENITHYHFDNVDLLITTHDIPKQTLNILPKHL
                     TTIKVAPLFSEDDRHKIRHVVKQKQNPVQAHHHMDTVNFLVVNTEQKSRHTVQIFEEA
                     QKILQAHHAIVEGYIESALEREKSSSTYIGNFMAIPHGDPEKVLQSHVLIFRTKDVFP
                     WRQHDVKLVFFLAISHKDKAFTKQMMQLIANLDDDSVNHLCSLDDHSLKQQLFEYLQE
                     "
     gene            complement(29653..30111)
                     /locus_tag="PF788_000751"
     CDS             complement(29653..30111)
                     /locus_tag="PF788_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303029.1"
                     /translation="MKKLLITIVIIVLIGALGFAIYAAINHSTSSSNNQEQENKSTHK
                     KTETEENDQQDDSADKTDKNQNNGNNVTNDNQPSSPSNVPNNHSTVPSNTQPAQPKDS
                     NSNKNNTHGGGSQSSTNNQNNQQQNTPPANKSNNTNTPSKQTPQAQSPKN"
     gene            30369..30896
                     /gene="isaB"
                     /locus_tag="PF788_000752"
     CDS             30369..30896
                     /gene="isaB"
                     /locus_tag="PF788_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunodominant staphylococcal antigen IsaB"
                     /protein_id="HDG6303030.1"
                     /translation="MNKTSKVCVAATLALGTLIGVTVVENSAPTSKQAQAAITPYYTY
                     NGYIGNNANFILDKNFINAIKYDNVKFNGIKLAKTNTIKKVEKYDQTFKGVSAKGNEA
                     SQLQFVVKNNISLKDIQKAYGKDLKKENGKTKEADSGIFYYQNAKKTLGIWFVVDHNR
                     VVEVTVGHTPYKTSK"
BASE COUNT        10888 a         4826 c         5807 g         9776 t
ORIGIN      
        1 aaaacgaaac aattataatg attaaacata aagccaatta gccaaattta tataaaaaaa
       61 gattatacgc ataaacgaga aaaagtaatt ttaaaaatat gaaaacgatt acatttagac
      121 gaataaaaat gaatttttac aaattttaac aaaatgagta tttttgtatc aaaaaagagt
      181 tgtattaaat tgaatagtgg catatattat aatctaatga atgtaaagat aatacaagga
      241 gttattacat gagtaaaaga cagaaagcat ttcatgacag cttagcaaac gaaaaaacaa
      301 gagtaagact ttataaatct ggaaaaaatt gggtaaaatc cggaattaaa gaaatagaaa
      361 tgttcaaaat tatggggcta ccatttatta gtcatagttt agtgagtcaa gataatcaaa
      421 gcattagtaa aaaaatgacg ggatacggac tgaaaactac ggcggttatt ggtggtgcat
      481 tcacggtaaa tatgttgcat gaccagcaag cttttgcggc ttctgatgca ccattaactt
      541 ctgaattaaa cacacaaagt gaaacagtag gtaatcaaaa ctcaacgaca atcgaagcat
      601 caacatcaac agccgattcc acaagtgtaa cgaaaaatag tagttcggta caaacatcaa
      661 atagtgacac agtctcaagt gaaaagtctg aaaaggtcac ttcgacaact aatagtacaa
      721 gcaatcaaca agagaaattg acatctacat cagaatcaac atcctcaaag aatactacat
      781 caagttctga tactaaatct gtagcttcaa cttcaagtac agaacaacca attaatacat
      841 caacaaatca aagtactgca tcaaataaca cttcacaaag cacaacgcca tcttcggtca
      901 acttaaacaa aactagcaca acgtcaacta gcaccgcacc agtaaaactt cgaactttca
      961 gtcgcttagc tatgtcaaca tttgcgtcag cagcgacgac aaccgcagta actgctaata
     1021 caattacagt taataaagat aacttaaaac aatatatgac aacgtcaggt aatgctacct
     1081 atgatcaaag taccggtatt gtgacgttaa cacaggatgc atacagccaa aaaggtgcta
     1141 ttacattagg aacacgtatt gactctaata agagttttca tttttctgga aaagtaaatt
     1201 taggtaacaa atatgaaggg catggaaatg gtggagatgg tatcggtttt gccttttcac
     1261 caggtgtatt aggtgaaaca gggttaaacg gtgccgcagt aggtattggt ggcttaagta
     1321 acgcatttgg cttcaaattg gatacgtatc acaatacatc taaaccaaat tcagctgcaa
     1381 aggcgaatgc tgacccatct aatgtagctg gtggaggtgc gtttggtgca tttgtaacaa
     1441 cagatagtta tggtgttgcg acaacgtata catcaagttc aacagctgat aatgctgcga
     1501 agttaaatgt tcaacctaca aataacacgt tccaagattt tgatattaac tataatggtg
     1561 atacaaaggt tatgactgtc aaatatgcag gtcaaacatg gacacgtaat atttcagatt
     1621 ggattgcgaa aagtggtacg accaactttt cattatcaat gacagcctca acaggtggcg
     1681 cgacaaattt acaacaagta caatttggaa cattcgaata tacagagtct gctgttacac
     1741 aagtgagata cgttgatgta acaacaggta aagatattat tccaccaaaa acatattcag
     1801 gaaatgttga tcaagtcgtg acaatcgata atcagcaatc tgcattgact gctaaaggat
     1861 ataactacac gtccgtcgat agttcatatg cgtcaactta taatgataca aataaaactg
     1921 taaaaatgac gaatgctgga caatcagtga catattattt tactgatgta aaagcaccaa
     1981 ctgtaactgt aggcaatcaa accatagaag tgggtaaaac aatgaatcct attgtattga
     2041 ctacaacgga taatggtact gggactgtga caaatacagt tacaggatta ccaagcggat
     2101 taagttacga tagtgcaacg aattcaatca ttgggacacc aacaaaaatt ggtcaatcaa
     2161 cagtgacagt tgtgtctact gaccaagcaa ataacaaatc gacgacaact tttacaataa
     2221 atgttgtgga tacgacagca ccaacagtga caccaatagg agatcaatca tcagaagtgt
     2281 attcaccaat atccccgatt aaaattgcta cgcaagataa cagtggaaat gcggtgacga
     2341 atacagtgac tggattgcca tccggactaa catttgatag tacaaataat actattagtg
     2401 gtacaccaac aaacattggt acaagtacta tatcaatcgt ttctacagat gcgagcggta
     2461 acaaaacgac gacaactttt aaatatgaag taacaagaaa tagcatgagt gattccgtat
     2521 caacatcagg aagtacacaa caatctcaaa gtgtgtcaac aagtaaagct gactcacaaa
     2581 gtgcatcaac gagtacatca ggatcgattg tggtatctac atcagctagt acctcgaaat
     2641 cgacaagtgt aagcctatct gattctgtga gtgcatctaa gtcattaagc acatctgaaa
     2701 gtaatagtgt atcaagctca acaagcacaa gtttagtgaa ttcacaaagt gtatcatcaa
     2761 gcatgtcgga ttcagctagt aaatcaacat cattaagcga ttctatttca aactctagca
     2821 gtactgaaaa atccgaaagt ctatcaacaa gtacatctga ttcattgcgt acatcaacat
     2881 cactcagtga ctcattaagt atgagtacat caggaagctt gtctaagtca caaagcttat
     2941 caacgagtat atcagggtcg tctagtacat cagcatcatt aagtgacagt acatcgaatg
     3001 caattagtac atcaacatca ttgagcgagt cagctagcac ctcggactct atcagtattt
     3061 caaatagcat agccaactct caaagtgcgt caacaagcaa atcagattca caaagtacat
     3121 caatatcatt aagtacaagt gattcaaaat cgatgagtac atcagaatca ttgagcgatt
     3181 cgacgagcac aagtggttct gtttctggat cactaagcat agcagcatca caaagtgtct
     3241 caacaagtac atcagactcg atgagtactt cagagatagt aagtgactct atcagtacaa
     3301 gtgggtcatt atctgcatca gacagtaaat caatgtccgt aagtagttca atgagcacgt
     3361 ctcagtcagg tagtacatca gaatcattaa gtgattcaca aagtacatct gattctgata
     3421 gtaagtcatt atcacaaagt actagtcaat caggttcaac aagtacatca acgtcgacaa
     3481 gtgcttcagt acgtacttcg gaatcacaaa gtacgtctgg ttcaatgagt gcaagtcaat
     3541 ccgattcaac atcaacatca ttaagcgatt cacaaagcac atcaagaagt acaagtgcat
     3601 caggatcagc aagtacatca acatcaacaa gtgactctcg tagtacatca gcttcaacta
     3661 gtacttcgat gcgtacaagt actagtgatt cacaaagtat gtcgctttcg acaagtacat
     3721 caacaagtat gagtgattca acgtcattat ctgatagtgt tagtgattca acatcagact
     3781 caacaagtgc gagtacatct ggttcgatga gtgtgtctat atcgttaagt gattcgacaa
     3841 gtacatcaac atcggctagt gaagtaatga gcgcaagcat atctgattca caaagtatgt
     3901 cagaatctgt aaatgattca gaaagtgtaa gtgaatctaa ttctgaaagt gactctaaat
     3961 cgatgagtgg ctcaacaagt gtcagtgatt ctggctcatt gagcgtctca acgtcattaa
     4021 gaaaatcaga aagtgtaagc gagtcaagtt cattgagttg ctcacaatcg atgagcgatt
     4081 cagtaagcac aagcgattcg tcatcattaa gtgtatcgac gtcactaaga agttcagaaa
     4141 gcgtgagtga atctgattca ttaagtgatt caaaatcaac aagtggttcg acttcaacaa
     4201 gtacatctgg ttcattgagt acctcaacat cattaagtgg ttcagaaagc gtaagcgagt
     4261 ctacctcgct aagtgattca atatcaatga gtgattctac tagtacaagt gactccgact
     4321 cattaagtgg atcaatatct ttaagtggtt ccacaagtct tagcacttcg gattcattaa
     4381 gtgattcaaa atcattgagt agctcgcaaa gtatgagtgg atcagaatca acgtcaacaa
     4441 gtgtgagcga ttcgcagtca agctcaacaa gtaatagtca atttgactct atgagcatca
     4501 gtgcatcaga aagcgactca atgtctacaa gtgattcgtc tagcatcagt ggatcaaatt
     4561 caacgagtac atcactttca acatctgact caatgagcgg aagcgtatca gtttcaacat
     4621 cgacaagttt aagtgactca atatcaggtt caacaagtgt aagtgactcg agctcaacaa
     4681 gcacatctac atcattaagt gattcaatgt cacaaagcca gtcaacaagt acaagtgcat
     4741 ctggttcctt aagtacatcg atatcaacat caatgtcaat gagtgctagt acatcgtcat
     4801 cacaaagcac atcggtgtcg acatcattat caacatcaga cagtatcagt gattctactt
     4861 caataagtat cagtggttca caaagtacag tagaatcaga atctacaagt gattcaactt
     4921 ctatcagtga ctcagaatca ttgagtacat cagattcaga ctcgacatcg acaagtacat
     4981 cggactcaac aagtggttca acttcaacaa gcatatctga atcattaagt acgtctggtt
     5041 caggttcaac gagcgtatct gactcaacat caatgagtga atctaattca tcgagtgttt
     5101 caatgtcaca agacaaatcc gactcaacat caattagtga ctcagaatca gtgtcaacaa
     5161 gcacatcaac gtcattgagc acatccgatt cgacaagcac atccgaatca ctgagtacat
     5221 ctatgtctgg ttcacaaagc atttctgact caacatcaac aagtatgtcc ggctcaacaa
     5281 gtacatccga atctaactca atgcatccgt cagactcaat gagtatgcat catactcaca
     5341 gcacgagcac atctcgctta tcaagtgaag caacaacgag cacgagtgaa tctcagtcta
     5401 cattaagtgc aacatctgaa gtgactaaac ataatggcac accagcacaa agtgaaaaaa
     5461 gattgccaga tacaggtgac tcaataaaac aaaatggatt actaggtggc gttatgacat
     5521 tattagttgg tttaggttta atgaagagaa agaaaaagaa agatgaaaat gatcaagatg
     5581 attctcaagc ataaattgaa tttatagctg gctaaaatta aaaagactga ggcaccaatc
     5641 actagaaaaa tcgatatagg attttaataa ttagtgatga acccttagtc tttttaatgt
     5701 ttttgatata aaagaggtgc aacatgttaa aacttttaca acaatacgaa tataaaatta
     5761 tatataaacg tatgctatac acatgtttta tcttgtttat ttatatatta ggcacaaaca
     5821 tttccatcgt ttcctataac gatatgcaag taaaacatga gtcatttttt aaaatagcta
     5881 tttctaatat gggtggagac gttaatactt taaacatttt cactttagga ttaggtccgt
     5941 ggttaacatc aatgattatc ttgatgctga tttcttatcg gaatatggat aaatacatga
     6001 aacaaacaag tcttgagaag cattataaag agcgcatctt aacattaatt ttaagtgtta
     6061 ttcaaagtta ttttgtgatt catgaatatg tttcgaaaga acgtgttcat caagacaata
     6121 tttacttaac aatattgatt ttggttactg gaacgatgtt attagtttgg ttagctgaca
     6181 aaaatagtcg ctacggcatc gcaggaccaa tgccgattgt aatggttagt attattaaat
     6241 caatgatgca tcaaaaaatg gaatatatag atgcaagtca tattgtgatt gcgttgttaa
     6301 tcatccttgt gataatcaca ttgtttatct tattatttat tgaattagta gaagtgagaa
     6361 taccatatat cgatttaatg aacgtttccg caacaaatat gaaatcttat ttatcttgga
     6421 aagttaaccc tgcaggcagt attactttaa tgatgagtat ttcagctttt gttttcttaa
     6481 aaagtggcat tcattttatt ttatctatgt ttaataaaag catatcagat gacatgccaa
     6541 tgctgacatt tgatagtcca gtaggtattt cagtatattt agtgattcaa atgttattgg
     6601 gttatttttt atcgagattt ttaatcaata ctaaacaaaa atccaaagat ttcttaaaga
     6661 gtggcaatta tttttcagga gttaaacctg gtaaggatac agaacgttat ttaaattatc
     6721 aagcacgacg cgtatgttgg tttggattgg cattagttac agtcattatt ggtataccgc
     6781 tttatttcac attgtttgta ccgcatttat ctactgaaat ttatttctca gtacaactga
     6841 ttgtattagt ttacatcagt attaatattg cagaaacaat tcgtacatat ttatattttg
     6901 ataaatataa gccattttta aaccagtatt ggtaaggagg taattatgaa atactttatt
     6961 ccagcttggt acgatgacca acgatggtgg caagacacga ctgtgccgta ttatcaacta
     7021 caaaataaga cggaatttga cgatatgatt agtttaatgg gaatgcacct tgaaaatgac
     7081 ttagattatc aactgattgt tctcaatcat gcaccaaatt taagaacatt tttacatcga
     7141 tatgacttat atgagacaaa gtattcgtct gtgtttgatg aaattcaagg attcagtcac
     7201 catgcgccac aagcgattaa ttatcatcac ttaaaatggc cggatgatgt tgagtttgtg
     7261 tacacaccgt atttattaaa atgtgtgacg agtgaacaga cctatacaaa tatttatttt
     7321 agtcaagaag ggtattcaat ttggtttgaa gaatttgaaa gagatcagtt acaacggcgt
     7381 tatatttttg atgacagagg ttatttatca gcgatacgtt attttgatga tcagggagag
     7441 gcttcttacc aagaatattt aacgattaat ggagattgtg tacttcatga agatttgaaa
     7501 aatggcagag tcactgtttc aaaaagatat caacatcact atcaacaaac agaatataac
     7561 aatatggctc aactaattga agaaaaattt caagcaatga ttgcacaaca aatacatgaa
     7621 gatgatcatg tgattgtggc ttcagatgct aggcacaatc gacaaatagc caatcatatt
     7681 ccagcgaaat cattaagtta ttcatttttt aaaaatagaa atgaaactgt gtcagatgag
     7741 gaatatcaat ctatcgtaaa gaatgcccat ttaattgttg atagtgtgca actagaacgt
     7801 gatttaatta gtcatcaaga gaagtatcag cgggagaata caatgattcg aatcacacca
     7861 tttgaaacga gacaatcacc taatataagt agtcaattga tggaaacatt tataggtgta
     7921 tggatagatg gtatgagtga cgctgatttg caacaaatga tgcaacgact tgtggattat
     7981 atcgcacagg aagattatta ccgtttaatt ttattatcgc gccatcaaaa tgacataccg
     8041 atgtggcttc gtgaatgtat tacgtcggta aatgaggaat accaagctaa acagaatgcg
     8101 gatgttaatg tttcagcatt aatgacacct gaagatcaag atgacatcat tgctgttaag
     8161 acgatacatg ctgaacatga tgttgtagaa gcattgcgga cgttgcgact tgtgatagat
     8221 atgtcaaaag aacctgactt gtatttacaa attagtgcaa ttagcgctgg gattccacaa
     8281 attaatggtc aacaaacaga ttacgtctct gattatgaca atggccgtat tataaataca
     8341 gttgatgaat tagatgatgc gttaaattat tatttatttt atttgaaaaa ttggaattat
     8401 gcgtacgcct attctttaaa attaatagat gcatatgctt ctaagaatat tattaatcag
     8461 ctcgatgagt taatagaagg tgaaaatgat gccacgtaaa tttagagttt tgcaaattgg
     8521 aggagacgat ttagaaccta tttttcaaca caaaaaaggt gtgagttggg attacttcga
     8581 tattggattg tttgaatttg atagtggtta tgtagaggct attgaagcga ttgttgaagc
     8641 agaagggcgc tttgatttta tctatattca agcaccatac tcggagacat taacgaattt
     8701 attacaaatg ataagcgaac catacaatac gtatgttgat gaatcatttt ggtcagttga
     8761 atatgaacaa gacgaaaatg tccaaaaata cgttgttcaa ccattacatt accggaatat
     8821 tgaagaacgt aataataaat tagaggcagt tagcttctca ggacagtatg gagataaggt
     8881 ttctcctaag ttagcacttg tgcatccgaa ttttaaagga gatgtcgttt accaaggtaa
     8941 ttcagagctc acattgagtg gagaatttgg gaaagaattt aaacctatcg catcttggca
     9001 aaataatctc gtttacgata aagataaagt cattcaaata tggccagaat ttgatattga
     9061 tggtgcggtc gagttgcaat atacatttag attgattcag actggcgctg atggtgcatt
     9121 aattgaacaa atcgtattga ctgatgatat gttagacagt cctttagaga tacctgcgaa
     9181 accatttgat gcttatataa gtgtaactgt taaggcgcgt gggaacggga cggtacattt
     9241 aggacctata cacaaacgat ggtctagatt agacatgggt caatttttac ttggtggtag
     9301 tcgtttcgta gatagtcaac gacaggaatt tatttattat ttccaccctg gtgatatgaa
     9361 accgccacta aacgtatatt ttagtggtta tcgaacagcg gaaggtttcg aaggatatta
     9421 tatgatgaaa cgtatgaatg caccgttttt acttatcggc gatcctcgtg ttgaaggtgg
     9481 tagtttttat atcggttcat ctgaatatga acaaggtatt atcaatgtta ttgacgagac
     9541 attagaaaag ctgaatttta aatcacatga attaatatta tctggtttat ctatgggttc
     9601 atttggtgcc ttgtattatg gtgctcagtt aaatcctcag gcaattattg ttggtaaacc
     9661 acttgttaat attggaacga ttgctgaaca tatgcgatta cttagaccag aagagttcgg
     9721 tacagcatta gacgtcctgg tgtctaatga aggtgataca tctcaagcgt cgatacaggc
     9781 attaaatcaa aaattttggc aaacatttca aaagaaatca ttgtcacaaa ctgtttttgc
     9841 catagcatat atgcaacatg atgattatga tccacatgca tttcaagagc tattacctgt
     9901 attgacagca caccaagcaa gagtgatgaa tcgcagtatt cctgggcgac ataatgatga
     9961 ttcacctacc attgcaagtt ggtttgttaa tttttacaac attattttgg aagacaagtt
    10021 tgggagagtt caacatgctg aaaaacaaaa catttaaagt tacttggaat tatatttcac
    10081 aaactacatt tatgtatggc tctaaagtat cattttcaaa tggtgaagtg acttttataa
    10141 atcctttgat gccctctgga ttaccgattc atgagtggtt gatgttaaag caattttcaa
    10201 aatataaaag tgcgccaagt ttaccaattt tgcgtagagg acagcattat aaattgcatt
    10261 ttgattttga tgcaacgcct gctggttcag tgtattttat catcattttt tataataaaa
    10321 atggcacaaa actaagtact gagattgtaa agtcaaatag tattacgatt caatatcctg
    10381 atgaagccta tgcttataaa ataaaaatga tgaatgcagc atcgacgagt cttatattta
    10441 gatgtttaac aatcacagag atgacgcatc aatatgattt agagtataaa agcatgcggg
    10501 tgacgaagat aggcgatgac caatatggaa atgatatgat caatgtcatt attgcagaac
    10561 catctgacac ctatccaact atttcgaatg attttttgaa actgtttggt catgtttggc
    10621 tcgttgaacg ttggatggac gacaatatcg agggaaatat taagcaacta aagaatgatt
    10681 tgcaaagtca agatacccta aaggctatta atttgattag ttatgggtca aagtcaaatg
    10741 tttttgcaac ttatgtcgct cagcatttgg gttgcaaagt gtatcgtaca agccatgaag
    10801 atgatgattt aaaaggatgg cttacagaac atgtcccagg aaatcatgaa ctaaaagata
    10861 caaatgtcga ggtttatttt aaagaagagc aagacaaaca tctaaattat atgtcacgtt
    10921 taatgaatcc agtacgattt ttagattact tagatgtatc gaaactgaat ggtggggaag
    10981 taaatgaaac ataaactaga tgttacgata aacgaattaa gactaaagtc gattagaaaa
    11041 atagtgaaac gcatcaatac atggagcgat gaagttaaat catattctga tgatgcgtta
    11101 aaacaaaaga caatagaatt taaagaacgt ttagcatcag gagttgatac actagataca
    11161 ttgttacctg aagcttatgc agtggcacgt gaagcgagct ggagagtatt aggtatgtat
    11221 cctaaagaag ttcagttaat cggagcgatt gtattgcatg aaggtaacat tgcggagatg
    11281 caaacaggcg aaggtaaaac attaacggca acgatgcctt tatatttaaa tgctctttcg
    11341 ggaaaaggaa catatttaat tacaacgaat gattatttag cgaagcgaga ttttgaagag
    11401 atgcaaccat tatatgaatg gttaggttta actgcttcat taggttttgt tgatattgtg
    11461 gattatgagt atcaaaaagg ggaaaaacgt aatatatatg aacatgatat tatatataca
    11521 actaatggac gtctcggttt tgattattta attgataatt tggctgatag tgcggaaggg
    11581 aaatttttac cacaattaaa ttacggtatt attgatgaag tggattcaat cattttagat
    11641 gctgctcaaa caccattagt tatttcgggt gcaccaagat tacaatcaaa tctatttcat
    11701 attgtgaaag agtttgtaga tacattgatt gaagacgtgc attttaaaat gaagaagacc
    11761 aaaaaagaaa tatggctgtt aaatcaaggt attgaagcgg cacaatcata ctttaatgtt
    11821 gaagatttat atagcgaaca agcgatggtc ctagtgcgta atattaattt agcactgcgc
    11881 gcacaatatt tgtttgaatc taatgtcgat tactttgtat ataatggtga tattgtttta
    11941 attgaccgta ttacaggtcg tatgttaccg ggaactaagt tgcaagctgg acttcaccaa
    12001 gctattgaag cgaaagaagg tatggaggtt tcaacagata aaagtgttat ggcaacaatt
    12061 accttccaga atttatttaa actttttgaa tcattttcag gtatgacagc tacaggaaaa
    12121 ttaggcgaat cagagttctt tgatttgtat tcaaaaatag tcgtacaagt accaactgat
    12181 aaagcgattc aacgtatcga tgaaccagat aaagtgtttc gttcagttga tgagaaaaac
    12241 atcgcgatga ttcatgatat agttgaactt catgaaacgg ggcgaccggt tttactcata
    12301 acgagaactg ctgaagcggc tgaatacttt tcgaaagtat tattccaaat ggatattcct
    12361 aataatttac tcattgcgca aaatgttgca aaagaagcgc agatgatagc tgaagcaggg
    12421 caaattggtt ccatgactgt tgcgactagt atggcaggtc gaggcacaga tattaaactt
    12481 ggtgaaggtg tcgaagcatt aggtggatta gctgttatta ttcatgaaca tatggaaaat
    12541 agccgtgtag acaggcaatt acgtggtcgt tctggtagac aaggggatcc gggatcatct
    12601 tgtatatata tttcactaga tgattattta gttaagcgat ggagcgatag taatttagcg
    12661 gaaaataatc aattatattc attagatgca caacgattat cgcaaagtaa tttgtttaat
    12721 cgcaaagtta agcaaattgt agttaaagcg cagcgtatct cggaagaaca aggggttaaa
    12781 gctcgtgaaa tggctaatga atttgaaaaa agcattagta tacagcgaga tcttgtatac
    12841 gaggaacgca atcgagtttt agaaatagat gatgctgaga atcaagattt taaagcgtta
    12901 gctaaagatg tatttgaaat gtttgtaaat gaggaaaagg tgctaacaaa atcgcgtgtt
    12961 gtcgagtata tttatcaaaa tttaagtttc caatttaata aagatgtggc ttgtgttaat
    13021 tttaaagata agcaagcagt agtgacattt ttattagagc aatttgaaaa gcaattagct
    13081 ttgaatcgta aaaacatgca aagtgcatat tattataata ttttcgttca aaaagtcttt
    13141 ttgaaagcaa ttgattcatg ttggttagaa caagtcgact atttacaaca attaaaagca
    13201 agcgttaatc aacgacaaaa tgggcaacgt aacgctattt ttgaatacca tagagttgcc
    13261 ttagattcat ttgaagttat gacacgaaat atcaaaaaaa gaatggtgaa aaatatttgt
    13321 caaagcatga ttacatttga taaagagggt atgccagtta tacattttcc ataaatgaaa
    13381 aggggtagcg catgacaata tataatataa actttggtat aggctgggcg agtagcggtg
    13441 ttgaatatgc acaagcttac cgtgctaaat tattgagacg tacaaatcaa gacactaaat
    13501 ttgtgttttt agattttata cagtcagaga acatacagac attaacgcaa aacattgggt
    13561 ttaaagatca agaagttatt tggttgtatc agtattttag tgatatttct ttagcaccaa
    13621 caacgtacac gttagatgac attgaacgtg agcttggtca tgacattagt tttagagaaa
    13681 gaaatggtaa gatagtccgc ctatatttta atgggaaatc atcatttgta acatgttatc
    13741 tgcaaaatga acaaaaagat attgtggatc gtgcagaatt tgtaattaat agtatgttag
    13801 tacgtaaaga tttttatagt tatacgcgca tattttctga gtattatgca ccagctgata
    13861 ataaagcgaa attatatatg cgacaatttt ataatcaaga tggttccatc gcttataacg
    13921 aatatattga tggagacagc tctatatatg tgtttgaaga tgcggtgttg tataacaaaa
    13981 cggaatttat tgcatacttt ttacaacgat tgaatttaac ccgagacgat attgtcatat
    14041 tagaccgcgc ttctgatatt ggtcaggctg ttttgcagca taaaggtgat agtaaagttg
    14101 gtgttgtgat tcatgctgat cattatagta ataatatgat gagtgagcag catatactat
    14161 ggaacaatta ttatgaatat caattttcaa aagctaaata cattgatttc tttattacag
    14221 caacagatat tcaaaatcat atggtttgtc gacaatttga gcaatatcaa ggttatcgcc
    14281 cacgtgttta tactattcct gtgggaagca ttgatgcatt atcatatcca acattatcaa
    14341 gaaagccata tgcgatgatt agtgcatctc gtttagcgaa tgagaaacat attgattggc
    14401 ttgtcaaagc ggttatcgtg gctaaacgac aagtgccaga attaacattt gatatttatg
    14461 gagaaggtag cgagaagacg cgactgcgta aaattattga tacacaccgc gcacaagatt
    14521 atattcgttt actagggcat gttaaacttg atgaaattta taatgattat gagttatttc
    14581 tttctgcatc aactagcgaa ggttttgggt taacactaat ggaagcggta ggctcaggac
    14641 taggtatgat tggattaaat gtgaattatg gtaacccaac ctttattcga gatggggaaa
    14701 atggctactt ggtacctttt gataccgacg aagatagtgt ggatgatgtt atcgcaaaac
    14761 tagctcatgc cattgtaatg tattttaaca atggtcccca gacaccacat gacatctctt
    14821 atgaagtggc acagcaattt atgactcaag atattatttt aaaatgggaa acattagttc
    14881 aagaggtgct acatgattaa attatttgat tactttaacg atcattcacg aaagttatat
    14941 gagtctttta aagccagtaa gttggaagaa gatttaacaa ttgtactcaa tgacaatggc
    15001 tttttaccgg acgatgttat atcaccgtat caattttttg cagataatca taatacagaa
    15061 aatatgaaac cacgattttt taatcaggtt actgtaccag ctttttggga aattaaaggt
    15121 aacaacaatt cggctacaat taatgatatg ggacgtctac gaggtaaaat attttatcaa
    15181 agtggagagc gccctagaat tgttagtcgt gtcgaatggt ttgatgacca acaacgtgtc
    15241 cgatttgtcg attattattc taagaatggt attaaatttg cacaaactgt ttacgattta
    15301 aatcgtaaag cgatcttgaa gaaatatatg acagcagaag gtaaagaagt gatttatgaa
    15361 aattttgtaa catctgatgt catattggat tggcaaggga agtcttactt tttcccttca
    15421 aagctcgcat tcgcattatt ttttatcaag caacttgaaa ttacggaaca tcatttcgtt
    15481 attaactcac tagccctacc attttcagtg ttatataatt tgccatcaaa aggtagtgat
    15541 gttttggtat ggcaagaaca ctgtaatggt aatgtcccgg gaaatatgca attgatgtgt
    15601 aaaggtgata tgaaacgaca ttgtaatatt attattccag ataaaaacga atatgaaacg
    15661 atgctcaata tagcagacgc aaaggttcaa tctcgtattt tacaaggcgg atatctatat
    15721 aactatcgta gtcgtaatag atatactaaa gaaattgtaa tattaactaa ctcggatcaa
    15781 cttcgtaaca tcaaggtatt ggttgaaact ttaccagatt ttaagtttca catcgctgct
    15841 attacagaga tgtctgataa gctaatgcaa cttgatcaat atgctaatgt gcatttatac
    15901 ccatctatta atattgacag ggtaaatgaa ctataccagt tatgtgatat ttatcttgat
    15961 atcaatgagg gtaatgaaat tttaaatgcg gtggaacaag cgtttgacta tgagttgttg
    16021 attttaggtt atcgtcaaac cgcacaccat gctaaagtaa cattatcaga gcacttattt
    16081 gagcataatg atgagataac aatggaaagt aaagaccaat taatacaaat gttagaaagt
    16141 ttgaaagatc aacaacagtt tcgagatgct ttattagcac aaaaagcaca tgcacacgaa
    16201 atctcgcgtg aacaattcga gcaagttttt aaacaggcgc tcgaaagcta aaaggaaaaa
    16261 gcagtctaaa ataaaacatc atttaatata aaagatttga cgtaatatga tgttagcgac
    16321 atggacaata tgatattacg tcatgcttgt tttgtttact taaatataag ctaagtaata
    16381 agtagataat tactaacaac aataactaga tagataagtg taaatttctt gtaaacaggt
    16441 atataatagt atgtaattct ttgaaggaag taagtgagga aggagtatgt tgatggctaa
    16501 atatcgaggg aaaccgtttc aattatatgt aaagttatcg tgttcgacaa tgatggcgac
    16561 aagtatcatt ttaacgaata tcttgccgta cgatgcccaa gctgcatctg aaaaggatac
    16621 tgaaattaca aaagagatat tatctaagca agatttatta gacaaagttg acaaggcaat
    16681 tcgtcaaatt gagcaattaa aacagttatc ggcttcatct aaagaacatt ataaagcaca
    16741 actaaatgaa gcgaaaacag catcgcaaat agatgaaatc ataaaacgag ctaatgagtt
    16801 ggatagcaaa gacaataaaa gttctcacac tgaaatgaac ggtcaaagtg atatagacag
    16861 taaattagat caattgctta aagatttaaa tgaggtttct tcaaatgttg ataggggtca
    16921 acaaagtggc gaggacgatc ttaatgcaat gaaaaatgat atgtcacaaa cggctacaac
    16981 aaaacatgga gaaaaagatg ataaaaatga tgaagcaatg gtaaataagg cgttagaaga
    17041 cctagaccat ttgaatcagc aaatacacaa atcgaaagat gcatcgaaag atacatcgga
    17101 agatccagca gtgtctacaa cagataataa tcatgaagta gctaaaacgc caaataatga
    17161 tggttctgga catgttgtgt taaataaatt cctttcaaat gaagagaatc aaagccatag
    17221 taatcgactc actgataaat tacaaggaag cgataaaatt aatcatgcta tgattgaaaa
    17281 attagctaaa agtaatgcct caacgcaaca ttacacatat cataaactga atacgttaca
    17341 atctttagat caacgtattg caaatacgca acttcctaaa aatcaaaaat cagacttaat
    17401 gagcgaagta aataagacga aagagcgtat aaaaagtcaa cgaaatatta ttttggaaga
    17461 acttgcacgt actgatgata aaaagtatgc tacacaaagc attttagaaa gtatatttaa
    17521 taaagacgag gcagttaaaa ttctaaaaga tatacgtgtt gatggtaaaa cagatcaaca
    17581 aattgcagat caaattactc gtcatattga tcaattatct ctgacaacga gtgatgattt
    17641 attaacgtca ttgattgatc aatcacaaga taagtcgcta ttgatttctc aaattttaca
    17701 aacgaaatta ggaaaagctg aagcagataa attggctaaa gattggacga ataaaggatt
    17761 atcaaatcgc caaatcgttg accaattgaa gaaacatttt gcatcaactg gcgacacgtc
    17821 ttcagatgat atattaaaag caattttgaa taatgccaaa gataaaaaac aagcaattga
    17881 aacgatttta gcaacacgta tagaaagaca aaaggcaaaa ttactggcag atttaattac
    17941 taaaatagaa acagatcaaa ataaaatttt taatttagtt aaatcggcat tgaatggtaa
    18001 agcggatgat ttattgaatt tacaaaagag actcaatcaa acgaaaaaag atatagatta
    18061 tattttatca ccaatagtaa atcgtccaag tttactagat cgattgaata aaaatgggaa
    18121 aacgacagat ttaaataagt tagcaaattt aatgaatcaa ggatcagatt tattagacag
    18181 tattccagat atacccacac caaagccaga aaagacgtta acacttggta aaggtaatgg
    18241 attgttaagt ggattattaa atgctgatgg taatgtatct ttgcctaaag cgggggaaac
    18301 gataaaagaa cattggttgc cgatatctgt aattgttggt gcaatgggtg tactaatgat
    18361 ttggttatca cgacgcaata agttgaaaaa taaagcataa ttatattggg ggaagagcat
    18421 ctatatattt ttttaagtat ataagacgtc ttatttcccc ttaatttatt gtgaagtata
    18481 tgcaaaatgc aatgaataga ttgtccatca ttttaacgtt ataatgaatt taacgactta
    18541 gaactacaca agtaaaggag aatgaagatg tctcgaaaaa cggcgctatt agttttggat
    18601 atgcaagaag gtatagcgag tagtgtacct agaataaaaa atattattaa agcgaatcag
    18661 agagcaattg aagcagcaag acaacatcga ataccagtca ttttcatacg tttagtgtta
    18721 gataagcatt ttaatgatgt ctcctcgagt aataaagtgt tttcaacaat taaagctcaa
    18781 ggatatgcga ttactgaagc agatgcatct acacgaatac ttgaagattt agcaccacta
    18841 gaagatgagc cgattatttc taagcgacgc tttagcgcat ttacaggtag ttacttggaa
    18901 gtttatttac gtgcaaatga tattaatcat ttagtattaa cgggtgtctc tacaagtgga
    18961 gctgtattga gcacggcatt agaaagtgta gataaagact attatattac tgttttagaa
    19021 gatgctgttg gtgatagatc agatgataaa catgacttta ttattgaaca aattttatca
    19081 cgctcatgtg acattgaatc cgtagagtca tggaaaagta gtttatagtt aatataacgt
    19141 caattaaagc tcggcagtaa tgtttgagaa taagtacatt tgctcatatt tataaaatgt
    19201 gtgagatggc aattgaaacg gatatgatga ggaacatttg aacataaaat aatatattta
    19261 tataaaacga cccgaggcgt tcgaactgaa tgcctcgggt ttaattgaat aagaaatcag
    19321 acttatgaac agaaatatgt ttaagtccga actccttgtt tatacttata aattttacgg
    19381 gtttaatata atacttattt acctgtaata tatgataatt cttcagcggc agctgcgttg
    19441 atagttctat gagaaatgat acctaatcct ttaacattgg attctgaaat aacgatagaa
    19501 ccatcactgt taactttttc aacaaatgct acatgaccgt aatgttgatc tgcaccaaat
    19561 tgtccagcct caaatacaac agcagcatga cgttttggtg tatgacttac ttgataatca
    19621 cggtattgag ctcgattatt ccaattatgt gcatcaccta aatcacctga gatagatgta
    19681 ccaaattgtt tcatacggtt atatacgtac caagtacatt ggccatgtgg atatggcata
    19741 ctatcagata cctcacggaa aggtttgaat tcatctgatg aatcatcata atccttgata
    19801 gaacgttcat atttatctaa atctggcatg cgttcatcgt caaactgagt taattgatag
    19861 tgtttaataa tactgtttaa tttcttagca tagtttggat ctgtagcata tgttttagat
    19921 aagtgtgatg ttgcatcttt ataagaatcg gcttccgatt tccatgttgg tttataaatt
    19981 gttcgattgc catcaatacc atttttaata aggtcagagt aatcttttag tgattctttc
    20041 gtgcttggat attttcggaa tccagcatta atactataca attgattacc atcagcttct
    20101 aatgtgttaa aaggaacaga attcccttca aaagcacctt tgataccgaa taaattatgg
    20161 tttggtgact tagctaaagc actacgacct gagtcagatt ctaagattgc ttgggcaatc
    20221 atgacagacg cataaatatc gttatcttga ccaatgcgat gtgcatcttt agcaattgat
    20281 ttgacaaatt gacgtgtatc ttttgagtca acaacgttaa attgtccgct atcatcattg
    20341 ttagatatac taggatctgt ttcgaataat gatgttgcac gtgtatcctt ttgattaaca
    20401 tcgttattga atgattgagc aggtttagat ttatgtttca attcatcttg tgttggtaac
    20461 tgtggattct ttgtattaga tttttcattt ttgtcttttt tagattgaga tgcataatct
    20521 ttttgtgctt tctttgcatc ttcactgtat tgatccaaaa tagagtctaa agccgaatct
    20581 gacattgatt gattatcttt cgatgaagat ttttgatttg ctttatcgtc acttgctggt
    20641 tgactatttg attgattagg ttgtgttggc tttggcgaat ttggttgctt attagatgta
    20701 cttggttttg tattgtttga tttaggtgct ttttgattgt ctgctttatc ttgtttagat
    20761 gattgcgtat cagtgtcatt tttgatgcta ttgtcactgt ttttattcga atcatttgtt
    20821 gacttttcgc cattacgagg ttgttcgtaa tcagaaatat ccgaatttaa attgaataag
    20881 ttttggatta aagttgttaa tgagtaatta tcatcgtatt tatttttggt tagcaattgg
    20941 tttatattgg tttgtggtaa attcttataa ataaaatcaa tgatattgtt agagtctgaa
    21001 gtgctgtcgt ctatagtttt aaattttttg tcgttattgt cttggttact tgtattattt
    21061 ttgtctgctt tatcaatatc tttacttgta gtatccttag aagtttcatc gtcattagat
    21121 ttttttgaat catgagatgt tgtcttagct gtagtatctt tttgaggtgt atcagcataa
    21181 gcggtaggtg aaactaaagt aggtaatacg agcgtagttg atagcaaata aattaaaatt
    21241 ttatttttag gcatatttcg tattctccct tgaaaaatat aataattaag tgtgataata
    21301 aactatgatt tgttataatt tatcgtatgc tgaaaatagt tgataggtat caatcgacta
    21361 aatatcttcc agtaaattga ttatactaat tcacaacgca aaaataaatt aatttacaaa
    21421 aaatatataa aaaatatgaa taattcctac ataggagtgt gacaatgaag aacgcattta
    21481 aattatttaa aatggatctg aagaaagtag ctaagacgcc agctgtgtgg attatcttag
    21541 caggcttagc tattttgcca tcgttctacg cttggtttaa cttatgggca atgtgggatc
    21601 catatggcaa cacgggacac atcaaggtcg cagtcgttaa tgaagataaa ggcgacacaa
    21661 tcagagggaa aaaagttaat gtcggtaata cgatggttaa tacactcaag aaaaataaaa
    21721 gttttgattg gcagtttgta agtagagaga aagctgatca tgagataaaa atgggtaaat
    21781 attttgcagg tatttacatc ccatctaagt ttacacatga aattacaggg acactacgta
    21841 agcagcctca aaaagcagat gtagaattta aggtgaatca gaagattaac gctgttgcgt
    21901 ctaagctaac agatactggt tcgtcagttg tcgttgaaaa agcgaatgaa caatttaata
    21961 aaacagtaac tcgagcatta ttagaagaag ctaacaaagc aggtttaact attgaagaaa
    22021 atgtgccgac aattaacaag ataaaaaatg cggtatattc agcagataaa gctttaccta
    22081 agattaatga ctttgcgaat aaaattgtat atttgaataa ccaccaagcg gatttagata
    22141 aatatgccaa tgattttaga aaactaggaa attataaagg tgatatttta gatgctcaga
    22201 aaaaattaaa cgaagtcaat ggtgctattc cgcaacttaa tgaaaaggct aagttgatat
    22261 tagctttaaa taattatatg ccgaaaattg aaaaagcgtt aaattttgca gctgatgacg
    22321 tgccagcgca gttccctaaa attaatcaag gacttaacat tgcgagtcaa ggtattgatc
    22381 aagctaatgg acagttaaat gatgccaaag gcttcgtcac acaagttaga agtagagtcg
    22441 gtgattatca agatgcaatt cgacgcgcgc aagatttaaa tcgaagaaac cagcaacaga
    22501 ttcctcaaaa tagcgcggcg aacaacgaaa catcaaatag tgcacctgca gctggtaatg
    22561 gtgtagcatc aacgccacca agtgcaccaa gtggcgatac tgcaccaaat aataatgtta
    22621 cgcaaaatac cgcaccaaat agtaataatg cgcctgtatc gactacacca caaagtacaa
    22681 gcgggaaaaa agatggtcaa agttttgtag atataacaac aacacaagtc agcacagcta
    22741 acgagaacac acaaaacatt acagataaag atgttaaatc aatggaagcg gcattaacgg
    22801 gctctttatt atcattatca aataatttag atacccaagc gaaagccgca caaaaagata
    22861 gtcaggcatt acgtaatatt tcgtatggga ttttagcatc ggacaagcct tctgatttta
    22921 gagagtcttt agataatgtt aagtccggtt tagaatacac aacgcaatat aatcaacaat
    22981 ttatcgatac attaaaagag attgagaaga atgaaaatgt tgatttatca aaagaaattg
    23041 ataaggtaaa agcagctaat aatcgaatta atgaatcatt aaggttagtt aatcaattaa
    23101 gcaatgcatt aaagaatggt agttcaggaa ctgctgaagc tactaaatta ctagatcaac
    23161 tttcaaaact agattcatca ttatcatcat ttagagatta tgttaaaaaa gatcttaaca
    23221 gctctttagt atcaatatca caacgtatta tggatgaatt gaacaaaggg caaactgcat
    23281 tatccaatgt tcagtctaaa ttaaatacaa ttgatcaagt cattaacagt ggacaagcta
    23341 ttttaaaaaa tggtaaaaca cgtattgatc gcttacaaac agtattacca agtattgaac
    23401 aacaatacat tagtgctgtt aaaaatgctc aagcaaactt ctcgaaagtg aaaagtgatg
    23461 tagctaaagc tgctaacttt gtgcgcaatg acttaccaca gttagaacag cgattaacta
    23521 atgcgacagc aagtgtgaat aaaaatttac caacgttatt aaatggttat gatcaagcgg
    23581 taggattact aaataaaaat cagccacaag cgaaaaaggc tttatcagat ttagctgatt
    23641 tttctcaaaa taaattgcct gatgttgaaa aagatttgaa aaaagcgaat aaaattttca
    23701 agaaattaga caaagatgat gcagtcgaca aattaatcga cacacttaag aatgatttga
    23761 aaaagcaagc gggtattatt gcaaatccta ttaataagaa gactgttgat gttttcccag
    23821 ttaaggatta tggttcaggt atgacaccat tctatactgc actgtcagta tgggtaggtg
    23881 cactcttgat ggtaagttta ttaacggttg ataataaaca taagagtcta gagtcagtct
    23941 taacgacaag acaagtgttc ttaggtaagg caggattctt tataatgctt ggtatgttgc
    24001 aagcactcat tgtatcggtt ggagatttgt taatcctaaa agcaggagtt gagtcacctg
    24061 tattatttgt acttataacg attttctgtt cgattatttt caactcaatc gtatatacgt
    24121 gcgtatcatt acttggtaac ccaggtaaag ccattgcaat cgtattgctt gtattacaaa
    24181 ttgcaggtgg tgggggaaca ttcccaattc aaactacgcc acaatttttc caaaacattt
    24241 cgccatactt accatttacg tatgcaattg attcattacg tgaaacagta ggcggtattg
    24301 ttccggaaat cctaattaca aaattaatta tattaacgtt atttggtata ggattcttcg
    24361 ttgtaggttt aattttaaaa cctgtaacag atccattgat gaagcgcgta tctgaaaaag
    24421 ttgaccaaag taacgttaca gaataaaaat taaatccaca cattagggtt atagctcctt
    24481 aatgtgtgga tttttatgtt tttagacaga agagatagta atttctgtct tttatgggac
    24541 ggttgttatc attgctatta tccaggatga cttactatag cactaatatt accgacaaag
    24601 tgaatatcct cgtcttccgt agttaaaata aagctagaac ctttttggat gtcatagtgc
    24661 ttatcgttta ctgttaaagt accagtacca tcgataattg taactaagca ataagcatgt
    24721 ggtttattga attttaaatc tccatgaata tcccatttat atactgcaaa atattgatta
    24781 tctacaaatt gagttacagt gtgtgtgtcg atgtgagttg ttataggagt agtatttggt
    24841 tcatgattgc ctaattcaat cacatcttta ctttgctcta agtgcaaatc acgcaattga
    24901 ccattttgat ctcgtctatc atagtcataa atacggtatg tcgtatcgga ggattgttgt
    24961 gtctctaaaa ttaaaatacc cgaaccaatg gcatggacag tgccagcagg aacataataa
    25021 aagtcaccgg gcttaacagg tatacgtttg aaaagactgt caaattcatg attatcaatc
    25081 atgtctatta acgtctgttt attatgtgca tgtacgccat atataatttc agcacctggg
    25141 gctgcatcta aaatatacca acattctgtt ttacctagtt cgccttcgtg ttttaaagcg
    25201 tagtcatcat ctgggtgaac ttgaacagat aatttatcat tggcatctaa tactttagtt
    25261 agcagaggga aactatctcg tgaatcatta tcgaataatt cacgatgttg tgaccaaagt
    25321 tgatctaggg tcatatcctt gtatggacca ttgataattg tattaggacc atttggatgt
    25381 gcagaaattg cccagcattc accagttgtt tcattaggga tatcatagtt aaatgctttt
    25441 aatgcatgac cgccccaaat tctgtcttta aaaacgggtt gtaaaaataa tgccatagtt
    25501 aaaactcctc tatattttca ttaataagtt ataaatttct gtagtactgt ttgcattaat
    25561 tagtgattgg cgtgtctcat cattcattaa cgctttagat aagcgctgaa gtatttttaa
    25621 atgtgtatcc tgactgttgt ttggtacggc aattaagaat atcaattgag gtagactacc
    25681 atctagactg tcccatttaa caccatgatt atttttcata acagctacaa tcggttgttt
    25741 tacaacatca gactttgcat gtggaatggc cacgttcatg ccaatagctg tcgtagaccc
    25801 catttcacgt tctagtattg cattttttaa atgcgatgtg tgctctacat aacggcaaat
    25861 tttaagttta tgaatcaaca tatcaattgc ttcgtttcga gacatgtcgt gatcagtaat
    25921 tatcatagtt tgttgatcaa aaacatgaga aggtttattg agatgtgaat gtttcgcggt
    25981 gttatctaca ttgtcaacct ctgtatcatg ttgtgtaata tctgtatcat gaagttgcgt
    26041 gtgttgcgct ggtgcatcta ctgctataac tggtgtattg cgttttaata atagtacagt
    26101 agtcattgtg acaagactac ctactatcac tgcaaagata aaccataata catgatcaat
    26161 accacctaat acagccacga ttggacctcc atgtgcgact ctatcgccga caccaccaat
    26221 ggctgcaatg actgatgcaa tcattgcacc aatgatgttt gcaggtataa tgcgcaatgg
    26281 atcttgggct gcgaaaggaa tagcaccttc agtaatacca aatagtccca tagtgaagga
    26341 agccttaccc atttctcttt cggaatgatt gaatttatac ttttgaacaa acgttgctaa
    26401 acctaaaccg attggtggtg tacatacagc aactgcgacc atacccataa cggcgtaatt
    26461 accttcagca ataagtgctg agccaaataa aaatgctacc ttgtttactg gaccgcccat
    26521 atcgaaggca atcatcgcac ctataatcat cgcaagtata ataatattag caccttgcat
    26581 actttttaac caggttgtta atgcctcaaa aatattagaa attggtgcac cgattaaaaa
    26641 tataaatatc aatcctacaa cgaccgatga aataatggga ataataatga taggcataat
    26701 tggtgccatt gcttttggaa ctttaatatc tttaatccac tttgcgatat aacctgctaa
    26761 gaaaccagca acaataccac ctaaaaatcc tgcgcctgca tcactgccat aaaaactacc
    26821 gtcagcagcg atagcgccgc caatcatacc aggaacaaga ccgggcttgt cagcgatact
    26881 aacagcgata tatccagcta gtattggaac cataaattta aaggctaaac taccaatgtt
    26941 ttcaatggat ttccaaaatg aatcatctgg gatgactaat ccttttgatg tcgtttcacc
    27001 gcctagagtc agcgcgatgg cgataaggag tccaccaact acgataaaag gaaccataaa
    27061 cgatacaccg ttcattaaat gttgatacac catttgaata ccacttttag acttaccgcg
    27121 atctttcgaa tgataatttg tttcagattg ataaataggc gcatcttgat taatgatacg
    27181 ttgaattaga cctctcggat tatgaatccc ttcgcgaaca ttttcattaa tcaaccgttt
    27241 accaacaaat cgggacagat caacttgttt atcagctgca attatgacac cgtcagcttc
    27301 ttcgatgtct tgcgtagtta aaacattttc agcaccaaca ccgccctgtg tctctacttt
    27361 aatatccaca cccatttctt ttgctacctg ctcaagcttt tcttgagcca tatatgtatg
    27421 tgcaatgcca tttgggcatg aggtaatagc tacaattttc ataaaatcat ctccttttct
    27481 atattgtaag cgtattctcg atactaaaaa aaagaataat taccgttact agtggcaatt
    27541 attcttgtaa gtattcaaat aactgttgct ttaaactatg atcatctaaa ctacataaat
    27601 ggttcactga atcatcatcc aagttagcaa ttaattgcat catttgtttt gtaaaagctt
    27661 tgtctttatg cgaaatcgct aagaaaaaga caagtttgac atcgtgttgt cgccaaggaa
    27721 aaacatcttt tgtgcgaaaa ataagcacat gtgattgtaa aactttttca ggatctccat
    27781 gaggaatcgc cataaaatta cctatgtatg tagaagatga tttctcacgc tctaaagctg
    27841 attcgatata tccttctaca atcgcatgat gtgcttgtaa tattttttga gcttcttcaa
    27901 aaatttgcac agtatgccgt gatttttgtt cagtatttac gacaaggaaa ttgacagtgt
    27961 ccatatgatg atgtgcttga accggatttt gcttttgctt cacaacgtgt ctgattttgt
    28021 gacgatcatc ttcagaaaat aatggtgcaa ccttgatagt cgtcaggtgc ttaggaagta
    28081 tgtttagcgt ttgtttagga atatcatggg tcgttattaa taaatctaca ttgtcaaagt
    28141 gatagtgtgt tatattttct agtttaatcg tatttatcac tgacaactct tcggataagt
    28201 tatttatttt agtttctaaa aaattcgaca cacctagacc ataataacaa gcaatgacta
    28261 catttaattg tgttttggta cgacgctcga tggcagcttg aaaatgaatt gttaaaaata
    28321 caatttcatc ttcgctcatc tctatatcag tatcaattgc taatttatca atcgcttcaa
    28381 aaagtgtgtt aaacacaaag ggatagagtt ttttaatctc tataactaaa ggattgttta
    28441 aataaatgtt ttgagtgata cgtaaatatg ctttactaaa atgattatat aaattttgtt
    28501 gtaaaatcga atcttcattg aaaggtacat gaatacgttg ctgcatcaat tcgattaagc
    28561 gatcaatata actttgtata aatatacgtt ctatgccaat atcgagttta ttaaaatgat
    28621 aagcaataaa gaatgaaaac atattgatta ctttttcgtt caagtcataa cctaatcttt
    28681 cgttgatttg cttaatgcaa gattgagata tcaattttga atcgtggttt aacgtgtcta
    28741 gctcacttaa agattgctta cgtttaatga ttaaaatgag atgaattaaa agctgttgta
    28801 tttgaatatc agttgtttca atactatgtt gttgaagtgt ctcttgtata atatgcgaaa
    28861 tcatcctttg gtgtgaatca ggtaattcat ttaaaattag gtcttcaaca tgtacatgcc
    28921 ctgatgataa ttgatttaaa tggatgatgg cattagtgat atcattatct gttccatcga
    28981 ccacaatacc ttgttttttc ttgattgtta aagcgatatt aaatttttga caccattgtt
    29041 gaattcgaac gaaatagtcg ttgagcacag ttttagataa tagataatct tgctctagtt
    29101 gttgcaatgt ctgcgattta ttgtgcatta gcagttgata cgccatagat aataatagtt
    29161 tttctttata tgattgaata tgcgtgtaac gttcagttat cgtttctaag gtatactgag
    29221 atgtatttaa ttgatatcct ttagatttaa tacttacgat gatatcatcc ataaaattgc
    29281 tattgataac atggatatca ttgcgaactg tgcggtttga aacattgaca tgtttagcaa
    29341 tttcattaga actaatgtgc tttgatggat ttttaataaa aaactggagt agttttaagt
    29401 gtctatcaag catttaacat gtacctcctt tctaaatttt tcgtgtaagc gtttttaagg
    29461 gtgtattaat attattaaac atgagagctt atacatacgt caatgacatt aaagcgaact
    29521 tttatatgat tttaacagag tgcgaattat gcaaataaag aacagcagta agatatttca
    29581 aatagaaaaa tatctcactg ctgtttttct gaatttatgc atctggtact tgtggacgta
    29641 tcaggcaaat gattaatttt taggtgattg tgcttgaggt gtttgtttag aaggcgtatt
    29701 ggtattattt gatttattag caggtggtgt gttctgttgt tgattatttt ggttgtttgt
    29761 tgacgattga ctgccaccac cgtgagtatt atttttattt gaatttgagt cttttggctg
    29821 agctggttgc gtattcgatg gtactgttga atggttgtta ggaacatttg acggtgaaga
    29881 tggttgattg tcattagtaa cgttattgcc attattttga tttttatctg ttttgtctgc
    29941 actatcatct tgttgatcat tttcttcggt ttctgtcttt ttatgcgtag atttattttc
    30001 ttgttcttgg ttattacttg atgatgtaga atgatttatt gcagcataaa ttgcgaaccc
    30061 aagtgctccg attaatacga taattacgat ggtaataaga agttttttca aatataacgc
    30121 ctccatgtta atgaaaagta gttgatacgt gaagctaaat aatttatttc aatattgcca
    30181 taatcatttt aaaaaataaa tattagaaaa gtaggcgata ttaatatttt cattgttttt
    30241 tgtgtacttc aattagtata acaaaactgt tatgtattta taaatataat cattagtatt
    30301 tttatggctg aaaaagttat aataaaagtg taaggaataa aatatttgta tggaaaagag
    30361 agataattat gaataaaacc agtaaagttt gtgtagcagc aacattagca ttgggcacac
    30421 tgattggagt aacagttgtt gaaaattcgg cgccaacaag taaacaggca caggcagcaa
    30481 taaccccata ttatacttat aatggttata ttggtaataa tgctaatttt attctggata
    30541 agaattttat taacgcgatt aagtatgata atgtgaaatt caatggtatt aaattagcta
    30601 aaacgaatac gataaaaaaa gtagagaaat atgatcaaac ttttaaaggt gtttctgcaa
    30661 aaggaaacga agcaagtcaa ttgcaatttg tagttaaaaa taatatttca ttaaaagata
    30721 tccaaaaagc ttatggcaag gacttgaaaa aagaaaatgg taaaacaaag gaagctgata
    30781 gcggtatttt ttactatcaa aatgctaaaa agacattagg catctggttt gtcgttgatc
    30841 ataatagagt tgtcgaagta acagttggac atacaccata caaaacaagt aaataaaata
    30901 atggcatatt aaggctagag tgtgaggagt gataccgcat tctagtcttt tttattaaat
    30961 aataacgatt attgcgtctt acatagttgt ttgaaattga taaaaatgtt tatttgatta
    31021 tgattattta aatagttatc tcacatattt caagcattga ttaagtatat agagcactat
    31081 tttgtatttg ttaatatttt cacaaaaata aagccttgat aaattttaaa atataattaa
    31141 gctcaatttt taaaatttta tttagctaca gataacattt ttaaaaaaga aaagaatcaa
    31201 taaataaaat caacgaacaa aaagtataga aataaataga aataatcatt tacttttctg
    31261 aaaaattaaa ttaatatttt atttataagc tgttttt
//
LOCUS       DAMQWL010000018        30967 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.018, whole genome shotgun sequence.
ACCESSION   DAMQWL010000018 DAMQWL010000000
VERSION     DAMQWL010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 30967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30967
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.018"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(286..1062)
                     /gene="fetB"
                     /locus_tag="PF788_000753"
     CDS             complement(286..1062)
                     /gene="fetB"
                     /locus_tag="PF788_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HDG6303031.1"
                     /translation="MSNTALGLTALLLVIPIIISYKEGLHIIKDLIVATLRAVVQLII
                     LGFLLHYIFKINDKWLLILCVLVIIINASWNTISRASPVMHHVFWISFLAIFIGTALP
                     LAGTIATGAIQFTANEVIPIGGMLANNGLIAINLAYQNLDRAFVQDGTNIESKLSLAA
                     TPKLASKGAIRESIRLAIVPTIDSVKTYGLVSIPGMMTGLIIGGVPPLQAIKFQLLVV
                     FIHTTATIMSALIATYLSYGQFFNARHQLVARNTDVKSES"
     gene            complement(1055..1717)
                     /locus_tag="PF788_000754"
     CDS             complement(1055..1717)
                     /locus_tag="PF788_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDG6303032.1"
                     /translation="MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTF
                     QKQICNLFSPTSGELYFKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLA
                     RNDKFDRKRAKQLIKDVGLGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDEST
                     SALDVNNKEKIENIIFKLADQGVAIMWITHSDDQSMRHFQKRITIVDGQISNTEELNQ
                     HE"
     gene            complement(1965..3041)
                     /locus_tag="PF788_000755"
     CDS             complement(1965..3041)
                     /locus_tag="PF788_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HDG6303033.1"
                     /translation="MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNL
                     GGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHGFISFTPVGGWWNQVMLSQKVTI
                     TTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEEAGVEVGNMVT
                     PYSEFEVLANDKYLTAKAFDNRYGCALAIEVLKRLKDENIGINLYSGATVQEEVGLRG
                     AKVAANTIKPDLAIAVDVGIAYDTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKH
                     IKDVAKEHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLRYMHSNVSVLNVDDY
                     ENSIRLVTEIVRSLNDESYKNIMW"
     gene            complement(3396..3662)
                     /locus_tag="PF788_000756"
     CDS             complement(3396..3662)
                     /locus_tag="PF788_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="HDG6303034.1"
                     /translation="MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQ
                     SFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLILSAWSHYD"
     gene            complement(3662..3919)
                     /locus_tag="PF788_000757"
     CDS             complement(3662..3919)
                     /locus_tag="PF788_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HDG6303035.1"
                     /translation="MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLE
                     DWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDIDWDNL"
     gene            complement(4025..4219)
                     /locus_tag="PF788_000758"
     CDS             complement(4025..4219)
                     /locus_tag="PF788_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001790145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303036.1"
                     /translation="MMLFKNLNFVIFFEDMSFFKRIPHKILKIFKPENDKAVGNVVCS
                     TADFFLSIIGGMLEEKNKSL"
     gene            4278..4733
                     /locus_tag="PF788_000759"
     CDS             4278..4733
                     /locus_tag="PF788_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1307 domain-containing protein"
                     /protein_id="HDG6303037.1"
                     /translation="MKKLCSLIVVALVCIIALSACGKEQTKTYEGDVSGKHVLTSITY
                     KDDKVLKQSTINTIKYDDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHL
                     DIDYTEVDMKKLNKRLGVSTKENKDISFEKLEKQLKHRGLKEKDKMDDK"
     gene            complement(4901..6478)
                     /locus_tag="PF788_000760"
     CDS             complement(4901..6478)
                     /locus_tag="PF788_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding glutamate synthase family protein"
                     /protein_id="HDG6303038.1"
                     /translation="MTFLTVMQFIVNIIVVGFMLTVIVIGLIWLIKDKRQSQHSVLRN
                     YPLLARIRYISEKMGPELRQYLFSGDNEGKPFSRNDYKNIVLAGKYNSRMTSFGTTKD
                     YQDGFYIQNTMFPMQRNEISVDNTTLLSTFIYKIANERLFSREEYRVPTKIDPYYLSD
                     DHAIKLGEHLKHPFILKRIVGQSGMSYGALGKNAITALSKGLAKAGTWMNTGEGGLSE
                     YHLKGNGDIIFQIGPGLFGVRDKEGNFSEGLFKEVAQLSNVRAFELKLAQGAKTRGGH
                     MEAEKVNEEIAKIRNVEPYKTINSPNRYEFIHNAEDLIRFVDQLQQLGQKPVGFKIVV
                     SKVSEIETLVRTMVELDKYPSFITIDGGEGGTGATFQELQDGVGLPLFTALPIVSGML
                     EKYGIRDKVKLAASGKLVTPDKIAIALGLGADFVNIARGMMISVGCIMSQQCHMNTCP
                     VGVATTDAKKEKALIVGEKQYRVTNYVTSLHEGLFNIAAAVGVSSPTEITADHIVYRK
                     VDGELQTIHDYKLKLIS"
     gene            6673..7422
                     /locus_tag="PF788_000761"
     CDS             6673..7422
                     /locus_tag="PF788_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303039.1"
                     /translation="MSNTNKHYIEEEYATEQSRFFKRDIGFIFLYIFLVNILPIIIVF
                     LTFGLVAVFTQQAPWGFSFPISMNISYLLAVIISLAIFRLMHEDAFIPMIRSQIVASA
                     KYKWHILISFTLSVVLFLLLNHFNIFALNVDSFTVFDIYPLIKGYGSISLITIFSLTI
                     ILNTLICQLIFRHILIQELSRLIPLKITIVLSIILETLFYYPYINTWWEFIPALILAG
                     SATYLYLKSYRNFMVSYFYQLAVILVLHIFM"
     gene            complement(7646..8839)
                     /locus_tag="PF788_000762"
     CDS             complement(7646..8839)
                     /locus_tag="PF788_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6303040.1"
                     /translation="MKGAMAWPFLRLYILTLMFFSANAILNVFIPLRGHDLGATNTVI
                     GIVMGAYMLTAMVFRPWAGQIIARVGPIKVLRIILIINAIALIIYGFTGLEGYFVARV
                     MQGVCTAFFSMSLQLGIIDALPEEHRSEGVSLYSLFSTIPNLIGPLVAVGIWNANNIS
                     LFAIVIIFIALTTTFFGYRVTFAEQEPDTSDKIEKMPFNAVTVFAQFFKNKELLNSGI
                     IMIVASIVFGAVSTFVPLYTVSLGFANAGIFLTIQAIAVVAARFYLRKYIPSDGMWHP
                     KYMVSVLSLLVIASFVVAFGPQVGAIIFYGSAILIGMTQAMVYPTLTSYLSFVLPKVG
                     RNMLLGLFIACADLGISLGGALMGPISDLVGFKWMYLICGMLVIVIMIMSFLKKPTPR
                     PASSL"
     gene            complement(8851..9600)
                     /locus_tag="PF788_000763"
     CDS             complement(8851..9600)
                     /locus_tag="PF788_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303041.1"
                     /translation="MIKIKDVEKSYQSAHVFKRRRTPIVKGVSFECPIGATIAIIGES
                     GSGKSTLSRMILGIEKPDKGCVTLNDQPMHKKKVRRHQIGAVFQDYTSSLHPFQTVRE
                     ILFEVMCQCDGQPKEVMEVQAITLLEEVGLSKAYMDKYPNMLSGGEAQRVAIARAICI
                     NPKYILFDEAISSLDMSIQTQILDLLIHLRETRQLSYIFITHDIQAATYLCDQLIIFK
                     NGKIEEQIPTSALHKSDNAYTRELIEKQLSF"
     gene            complement(9593..10408)
                     /locus_tag="PF788_000764"
     CDS             complement(9593..10408)
                     /locus_tag="PF788_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303042.1"
                     /translation="MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGK
                     SITCKSIIGLNPERLGVTGEIIFDGTSMLSLSESQLKKYRGKDIAMVMQQGSRAFDPS
                     TTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLM
                     IALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIA
                     DRVVVMKNGQLIEQGTRESVLHHPEHVYTKYLLSTKKKINDHFKHVMRGDVHD"
     gene            complement(10405..11274)
                     /locus_tag="PF788_000765"
     CDS             complement(10405..11274)
                     /locus_tag="PF788_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303043.1"
                     /translation="MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTA
                     NKFAGMSFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQ
                     GFVDALIMRACDVMLAFPSYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVM
                     QYTASDHVRFAKTIGMNDMKIIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLG
                     VKAPTAEWGMMLNEARKVMFTHPEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSK
                     DKLRSVKKGVVQS"
     gene            complement(11271..12206)
                     /locus_tag="PF788_000766"
     CDS             complement(11271..12206)
                     /locus_tag="PF788_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303044.1"
                     /translation="MFKFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQGT
                     PNVTPELIAETNEKYGFNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNT
                     LKLTIISSVMVMITSIILGVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVS
                     VKLNILPTSGLTGPESYILPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVK
                     SITLMLHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPV
                     IQAYVLIVAVLFIVFNTLADIINALLNPRLREGAR"
     gene            complement(12219..13817)
                     /gene="cntA"
                     /locus_tag="PF788_000767"
     CDS             complement(12219..13817)
                     /gene="cntA"
                     /locus_tag="PF788_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylopine-dependent metal ABC transporter
                     substrate-binding protein CntA"
                     /protein_id="HDG6303045.1"
                     /translation="MRKLTKMSAMLLASGLILTGCGGNKGLEEKKENKQLTYTTVKDI
                     GDMNPHVYGGSMSAESMIYEPLVRNTKDGIKPLLAKKWDVSEDGKTYTFHLRDDVKFH
                     DGTPFDADAVKKNIDAVQENKKLHSWLKISTLIDNVKVKDKYTVELNLKEAYQPALAE
                     LAMPRPYVFVSPKDFKNGTTKDGVKKFDGTGPFKLGEHKKDESADFNKNDQYWGEKSK
                     LNKVQAKVMPAGETAFLSMKKGETNFAFTDDRGTDSLDKDSLKQLKDTGDYQVKRSQP
                     MNTKMLVVNSGKKDNAVSDKTVRQAIGHMVNRDKIAKEILDGQEKPATQLFAKNVTDI
                     NFDMPTRKYDLKKAESLLDEAGWKKGKDSDVRQKDGKNLEMAMYYDKGSSSQKEQAEY
                     LQAEFKKMGIKLNINGETSDKIAERRTSGDYDLMFNQTWGLLYDPQSTIAAFKAKNGY
                     ESATSGIENKDKIYNSIDDAFKIQNGKERSDAYKNILKQIDDEGIFIPISHGSMTVVA
                     PKDLEKVSFTQSQYELPFNEMQYK"
     gene            complement(13960..15261)
                     /gene="cntM"
                     /locus_tag="PF788_000768"
     CDS             complement(13960..15261)
                     /gene="cntM"
                     /locus_tag="PF788_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_096659686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylopine dehydrogenase CntM"
                     /protein_id="HDG6303046.1"
                     /translation="MSKLLMIGTGPVAIQLANICYLKSDYEIDMVGRASTSEKSKRLY
                     QAYKKAKQFEVKIQNEAHQHLEGKFEINRLYKDVKNVKGEYETVVMACTADAYYDTLQ
                     QLSLETLQSVKHVILISPTFGSQMIVEQFMSKFNKDIEVISFSTYLGDTRIVDKEAPN
                     HVLTTGVKKKLYMGSTHSNSTMCQRISALAEQLKIQLEVVESPLHAETRNSSLYVHPP
                     LFMNDFSLKAIFEGTDVPVYVYKLFPEGPITMTLIREMRLMWKEMMVILQAFRVPSVN
                     LLQFMVKENYPVRPETLDEGDIEHFEILPDILQEYLLYVRYTAILIDPFSQPDENGHY
                     FDFSAVPFKQVYKNEQDVVQIPRMPSEDYYRTAMIQHIGKMLGIKTPMIDQFLTRYEA
                     SCQAYKDMHQDQHLSSQFNTNLFEGDKALVTKFLEINRTLS"
     gene            complement(15254..16072)
                     /gene="cntL"
                     /locus_tag="PF788_000769"
     CDS             complement(15254..16072)
                     /gene="cntL"
                     /locus_tag="PF788_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-histidine (S)-2-aminobutanoyltransferase CntL"
                     /protein_id="HDG6303047.1"
                     /translation="MNNFNNEIKLILQQYLEKFEAHYERVLQDDQYIEALETLMDDYS
                     EFILNPIYEQQFNAWRDVEEKAQLIKSLQYITAQCVKQVEVIRARRLLDGQASTTGYF
                     DNIEHCIDEEFGQCSIASNDKLLLVGSGAYPMTLIQVAKETGASVIGIDIDPQAVDLG
                     RRIVNVLAPNEDITITDQKVSELKDIKDVTHIIFSSTIPLKYSILEELYDLTNENVVV
                     AMRFGDGIKAIFNYPSQETAEDKWQCVNKHMRPQQIFDIALYKKAAIKVGITDV"
     gene            complement(16083..16904)
                     /gene="cntK"
                     /locus_tag="PF788_000770"
     CDS             complement(16083..16904)
                     /gene="cntK"
                     /locus_tag="PF788_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine racemase CntK"
                     /protein_id="HDG6303048.1"
                     /translation="MNRQVIEFSKYNPSGNMTILVHSKHDASEYASIANQLMAATHVC
                     CEQVGFIESTQNDDGNDFHLVMSGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCS
                     DLVQCAIHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTE
                     IQHLVEAFVREQQWSHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASI
                     GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE"
     gene            complement(17771..18136)
                     /locus_tag="PF788_000771"
     CDS             complement(17771..18136)
                     /locus_tag="PF788_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303049.1"
                     /translation="MLKEKESFRLLYQAIREIADKIGDNQLETNSVSLLLLDFDFEHE
                     VFDELYLVILKYLNTVSIENISHSELLNLIENTIPEDREINTFVKNKIIIGFANNYFP
                     ELQVLANEIKSDMASSLKQ"
     gene            complement(18399..19217)
                     /locus_tag="PF788_000772"
                     /pseudo
     CDS             complement(18399..19217)
                     /locus_tag="PF788_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002503368.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            19450..20988
                     /locus_tag="PF788_000773"
     CDS             19450..20988
                     /locus_tag="PF788_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbgT family transporter"
                     /protein_id="HDG6303050.1"
                     /translation="MTSKHQQKGSIVNRFLNSVEKIGNKLPDPSVLFFLMCVGLAIMT
                     WVISLFNVSVKHPGTHQTIYIKNIISHDGFTMIMNDTIKNFSEFPALGLVLAVMIGIG
                     VAEKTGYFDKLMISVVNRAPRFLILPTIILIGILGSTAGDAATIILPPLAAMLFIKIG
                     YHPIAGLTMAYASAVGGFAANIVVGMQDALVYSFTEPATRIVSDSIKTNVAMNWYFIA
                     ASVVVLLPTILLVTTKLIIPRLGKYDDSLMHDDHEETSSHITDKEAHALKWANISFIV
                     TIILLIITAIPEHSFLRNAKTGSLLDDAPLINGVGLIILVVFLVPGLVYGILSKEIKN
                     TKDLGKMFGDAVGSMGTFIVIVFFAAQLLAYLKWSNLGIIAAVKGAKLLEHQNGIVLI
                     LGIIVLSAMVNMLIGSASAKWGILGPIFVPMLILIGFHPAFTQVIYRVGDSITNPITP
                     MMPYLPLLLTYAQKYDKRMKLGALLSSLMPYSIALSIVWTVFVIIWFLLGIPVGPGGP
                     IFVK"
     gene            complement(21100..21522)
                     /locus_tag="PF788_000774"
     CDS             complement(21100..21522)
                     /locus_tag="PF788_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDG6303051.1"
                     /translation="MPYNYKKQNGELMSVMSQGEKFIHQSPVNDELSALIKLLISKIN
                     GCHYCVDIHKKELKELGVTQMKIDEVLSFRHLDLFTDQEKVTLEFAEMLNSIKDFKKF
                     EIIDRLKSFYDEEQIIDLVFVVNQINGWNRLNIISDRL"
     gene            complement(21974..22393)
                     /locus_tag="PF788_000775"
     CDS             complement(21974..22393)
                     /locus_tag="PF788_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1433 domain-containing protein"
                     /protein_id="HDG6303052.1"
                     /translation="MSKKHVFIIIGVILCICTVSTVMHFKMKYDEKEKQKAIYYKEQQ
                     ERITLYLKHNTKETNTIKSVHFTNLETSPMGSAVIEGYINENKEDDFTAYASPEHNYQ
                     FGGAMIKSEGVDKLLKPAHERKSPEKIKEELDKKEGH"
     gene            complement(22411..22830)
                     /locus_tag="PF788_000776"
     CDS             complement(22411..22830)
                     /locus_tag="PF788_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1433 domain-containing protein"
                     /protein_id="HDG6303053.1"
                     /translation="MSKKKILILTSIMLIILISVAGIYLKVKYDEKEKQKAIYYKEQQ
                     ARITLYLKHNTKEPNTIKSVHFTNSETSPMGSAVIEGYINENKKDNFTAYATPEHNYQ
                     FGGAMIESEKLSELLKPANQLKSPDDIKKELNKKKSH"
     gene            complement(23097..23519)
                     /locus_tag="PF788_000777"
     CDS             complement(23097..23519)
                     /locus_tag="PF788_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1433 domain-containing protein"
                     /protein_id="HDG6303054.1"
                     /translation="MNKKHVFIIIGVILCICIVASVIYLKVKYDEKEKQKAIYYKEQQ
                     ERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDDFVAYGSPEHNYQ
                     FGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR"
     gene            complement(23770..24465)
                     /locus_tag="PF788_000778"
     CDS             complement(23770..24465)
                     /locus_tag="PF788_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDG6303055.1"
                     /translation="MTVLTDKVAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQ
                     NVANQLSQDSVKVVPTDVTNKEEVDELIKIAQQTFGGLDIVINSAGQMLSSKITDYQV
                     DEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAV
                     HTITQGLEKELAKTGVKVTSISPGMVDTAITAAYNPTDRKKLEPQDIAEAVLYALTQP
                     KHVNVNEITVRPV"
     gene            24754..25035
                     /locus_tag="PF788_000779"
     CDS             24754..25035
                     /locus_tag="PF788_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDG6303056.1"
                     /translation="MTYHERVLALRAESKRTAFDFRFEDLFSKEEWLSMSLAERQKAE
                     KAFRHEVKNMDDVRMPFSSVHDAQVKLYNVVYSYNGIKRNFKQVENEGF"
     gene            24971..25156
                     /locus_tag="PF788_000780"
     CDS             24971..25156
                     /locus_tag="PF788_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303057.1"
                     /translation="MLYILITALNVILNKLKMKDSNIISFIYSRHDRILYVNLVGNRF
                     KNNISMTKATSNIGRGF"
     gene            complement(25295..25486)
                     /locus_tag="PF788_000781"
     CDS             complement(25295..25486)
                     /locus_tag="PF788_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303058.1"
                     /translation="MRKEIEALIFSDVSSYDIYVNTGVNQGLIGDIKDGYLTIDSMPY
                     IDAERLYHFAMERKSLVTN"
     gene            25921..26043
                     /locus_tag="PF788_000782"
     CDS             25921..26043
                     /locus_tag="PF788_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303059.1"
                     /translation="MSYIIKFTFKFFEMATYISQLTLDIELVSSELLVILPGFI"
     gene            complement(26047..26841)
                     /locus_tag="PF788_000783"
     CDS             complement(26047..26841)
                     /locus_tag="PF788_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein"
                     /protein_id="HDG6303060.1"
                     /translation="MIHSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKDTFNQTL
                     KLYPTKNLDDFYDKEGFRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNT
                     RTTKGYYFISEMTDDSNGRPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFV
                     QYGNFKDINDYKDGDISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLK
                     GDGDLKGSSVGSRSLEFTFVENKEENIYFTDSVQYTPSEDTRYESN"
     gene            complement(26953..27060)
                     /locus_tag="PF788_000784"
                     /pseudo
     CDS             complement(26953..27060)
                     /locus_tag="PF788_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000649608.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Csa1 family protein"
     gene            complement(27377..27664)
                     /locus_tag="PF788_000785"
     CDS             complement(27377..27664)
                     /locus_tag="PF788_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303061.1"
                     /translation="MGLDFSGLPDLAVLEQMKEKEQISEVIAPEHVRMHHDHQNKLKS
                     DEKILLDQMVSHFKKFEDDFKNAAQGAWVKNATDELKDISNDLEKIQDIKV"
     gene            complement(27667..27993)
                     /locus_tag="PF788_000786"
     CDS             complement(27667..27993)
                     /locus_tag="PF788_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303062.1"
                     /translation="MFTTYKNINELENAYDEERKQLNDAFNQIDELRHQTRKKCEQMY
                     DHFLYLKHKMNYSEDAMIRMTRIIESFDRETNQRIRHHEMKLEDYKDELRREYLKQSD
                     RIEGDE"
     gene            complement(27993..29317)
                     /locus_tag="PF788_000787"
                     /pseudo
     CDS             complement(27993..29317)
                     /locus_tag="PF788_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001619610.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(29314..30098)
                     /locus_tag="PF788_000788"
                     /pseudo
     CDS             complement(29314..30098)
                     /locus_tag="PF788_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501248.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein"
     gene            complement(30210..30965)
                     /locus_tag="PF788_000789"
     CDS             complement(30210..30965)
                     /locus_tag="PF788_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000649608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein"
                     /protein_id="HDG6303063.1"
                     /translation="MRLWLYLVLLAVFIGACGMKKEESSKDKQIKENFNKTLSLYPTK
                     NLEDFYDKEGFRDQEFEKGDKGTWIIHSKMTIETNGKNMESRGLVLYVDRNTRTTKGE
                     FIVRELWEDKKGYSRSKEKEYPVKMEHNKIIPTKPIADDKLRKEIENFKFFVQYGDFK
                     DINDYKDGDISYNPNVPSYSAKYQLSNDDYNVKQLRKRYDIPTKKAPKLLIKGDGDLK
                     GSSIGHKNLEFTFIENKEENIYFTDSINFKPTE"
BASE COUNT         9581 a         5831 c         4406 g        11149 t
ORIGIN      
        1 ttttgcttta attttctgtg cttaattgga aaattattga aattgttttt cagtatttga
       61 aaaattaaca caagtatgtc atttaataat tatgtataat tacttcagtt tcaacaataa
      121 ctccaaaaaa gcacgcacgc tttatatgtc agaacagata actgactaca aagtatgcgt
      181 gcctttatga atattttcgc tgcgctaatg aatagcgata ctatatgtgc gcgtcacttc
      241 atttccaatt aaaactaatg cctaaatctg atgcagtaaa atctatcatg attcactctt
      301 aacatcagta tttcgtgcta ctaattgatg tcttgcattg aaaaattgac catagcttaa
      361 atatgtcgca atcaaagcag acataatggt cgcagttgta tgaataaaca cgactaacaa
      421 ttgaaattta atcgcttgta aaggtggtac gccaccaata attaagcctg tcatcatacc
      481 aggaatcgac acaagcccat atgttttaac cgaatcaata gttggcacta tagctaaacg
      541 aatactttca cgtattgcac ctttagaagc caatttaggt gtagctgcaa gtgataattt
      601 agattcaata ttagtaccat cttgtacgaa tgcacgatct aaattctggt aagctaaatt
      661 aattgcaatc aagccattat ttgcaagcat gccgccgata ggtataactt catttgcggt
      721 aaattgaatg gcccctgtcg caatagtacc tgcaagcggt aatgccgttc caatgaagat
      781 agctagaaat gatatccaaa acacatgatg catcactggt gatgctcgac taattgtatt
      841 ccatgatgca ttaataataa tgaccaatac acataaaata agcagccatt tatcgtttat
      901 tttaaaaata taatgcagca aaaatcccaa aatgattaat tgcacaactg ctcgtaatgt
      961 cgcaacaatt aaatctttaa taatatgtaa accttcttta tatgaaatga taatcggaat
     1021 gactaaaagc aatgccgtca atccaagtgc cgtattactc atgttgattc aactcctctg
     1081 tattagaaat ttgaccatca acaattgtta tacgcttttg aaagtgtcgc atactttggt
     1141 catcgctgtg ggtaatccac ataattgcca cgccttgatc tgctaattta aaaatgatat
     1201 tttctatctt ttctttatta ttaacgtcta atgcactggt cgattcatct aataaaagaa
     1261 tatccggtgt atacatcagt tggcgcgcta tagcaattct ttgccgctca ccacccgaca
     1321 tattttccac ttccgaactt aattgataat gtcccaaacc gacatcttta attaattgct
     1381 ttgcacgttt tctatcaaat ttatcattac gtgcaagtga tgggaatatc atgttatctt
     1441 caatcgtttc accaaacaag tcactttgct gcatcaaata actgattcgt tgacgcaatt
     1501 cttccgggtc ataatcatta tagggtttac ctttaaaata aagttctcca ctagttggac
     1561 taaacaaatt acatatttgc ttttgaaatg tacttttacc actacctgat ggacctataa
     1621 tggcaatact ctcgccttta tctactttta gactgatatg atctagtatg attctatcgc
     1681 tcgctttata cactaaatct ttaatttcta acaacatttg caccgctcct catgtaatat
     1741 atcaggtata ttattcccgt ttttttggtt tttagtgcaa ttacatttaa gaaaaaatca
     1801 ttttcttgta atatcaaaat ttaggcataa ttgattttca gcatttaaat taaaaacaaa
     1861 aaatcctatt aacatggata ctgtctaatg actaagaatt aaaattagac aattgtttaa
     1921 caacctacca tattaaaagg attctttatt atttatggat ttgattacca catgatattt
     1981 ttataacttt catcattcaa tgaacggaca atttcagtaa caagacggat agaattttca
     2041 taatcatcta cattgagcac tgaaacatta gaatgcatgt atcgcagcgt aacaccgatt
     2101 gtcatcgttg gaataccttc atttgcgaca tgaatacttc ccgcatctgt acctccacct
     2161 ggtgtcgtat cccattgtac ttcgatgtta tgttccttag ctacatcttt aatatgcttt
     2221 cgcaaacctt ggtgagcaat acttgtagca tccatcataa tgacaactgg accaccgcct
     2281 agtttactat cgctcgtttg acctgacata cctggggtat cataagcaat acctacatcg
     2341 acagctatcg ccaagtctgg tttaatcgta ttcgctgcca ctttcgcacc acgcaaacca
     2401 acttcttctt gcactgtggc accactgtat aagttaatgc caatattttc atcttttaaa
     2461 cgttttaata cctcaatagc taatgcacag ccatagcgat tatcaaatgc tttcgcagtt
     2521 aaatatttat catttgcaag cacttcaaat tcactatatg gcgtaaccat attgcctact
     2581 tcaacgccag cttcttcagc ttcttccttg ctactaacac caatatctat aaacatattt
     2641 ttgatttcca ttggcttttt acgttcttca ggcgttaaga catgtggcgg tttagaaccg
     2701 atgatacctc taatttcttt gcccgaatct gttgtaatcg ttactttttg agatagcatg
     2761 acttgattcc accatccacc aactggcgta aatgaaataa aaccatgttt atcaatcttt
     2821 gttaccataa aaccaacttc atccatatga ccagaaatca taattgagta ttgaccattc
     2881 tcagcatttt tctttccaaa aatgccaccc aagttatctt caataatttg atcactgaca
     2941 ggctctatat agttacgcat tgcttcttta acttgcattt cataaccagc aatgccgttt
     3001 acatctgtta aatgtttaag taatttgact gactgattca tgttattcat cctcctgtat
     3061 ttcaacttaa aactattgta tcactaactt tcagaaaaac gttccctacc gctttatcat
     3121 tttcaggctt aaatattttt aaaattttgt gaggaatccg cttaaaaacc tcatatttct
     3181 aaaatttaat attccgaaaa agtcacaatt taaaattcct tattataata cgttattctt
     3241 ttattgttac taatttcaat ctgtttagtc ttgcgctatt ataaaattaa aaagtgtaga
     3301 gataacaacg cattaacgtc gctattttcc ctacacttaa atactagttt ctttaattaa
     3361 cttatcatta aagttattca gatattgaat attcattaat cataatgtga ccatgccgat
     3421 agtattaata cttctttatt tcgatcatct acggtataga cgaccctgtg ctgatggtta
     3481 attcttcttg aatatcgctc taaatattta ggctctaatt tttcaaaaga ttgtgttatt
     3541 ttatacggat cattttttaa agtctcaaca atttctaaaa atgacttctt taaataagaa
     3601 tgttttattt tctttaaatc tgatttcgct gaatttttaa tcttaaccgt gtaattgctc
     3661 attaaagatt atcccaatca atatcatcta tatttgttgt accactatta tctttttctc
     3721 tttctcttac tttgtccatt gtaccagtag attcaagata tattgtctct tgtatacttt
     3781 tccaatcttc taaacctata atcacagcat tattttcggc attattgcca ctaatataaa
     3841 ttggttcgtg attattatta acatttttta gtaattgata aaaatctttt ctcgcttctg
     3901 tagggctagt gataatcata taaaccctcc tttgttttct gttacgctaa ttatagcgta
     3961 cgcacttgag tacgtcaata ttaccaacga gttcatcgta ttcttaatac ctatatgcta
     4021 tcgttcacaa acttttgttc ttttcttcca acataccgcc tataatgctc aaaaagaaat
     4081 cagcagtgga acacactacg ttccctaccg ctttatcatt ttcaggctta aatattttta
     4141 aaattttgtg aggaatccgc ttaaaaaaac tcatatcttc aaaaaaaatg acaaaattta
     4201 aatttttgaa taacatcatt ttttagtaaa tgttataatt tctttataat acaaatatcg
     4261 aaagaaggcg actgactttg aaaaaattat gttcattaat tgtagtagca ttagtttgta
     4321 tcattgcatt atcagcttgt ggtaaagaac aaaccaaaac atatgaaggt gatgttagtg
     4381 gtaaacatgt actaacttct atcacatata aagatgataa agttttaaaa cagtctacaa
     4441 tcaacacaat taaatatgac gatctaggta tggataaaga cgaagccaaa aagttattcg
     4501 ccaaatctga aagtattttc aaagacctta aaggcgtaaa atacaaagta gactataaag
     4561 ataaaaaagc aattgaacac ttagacatag attacacaga agttgacatg aaaaaattaa
     4621 ataaacgtct tggtgtttcg actaaagaaa ataaagatat tagttttgaa aaacttgaaa
     4681 agcaattaaa gcacagaggt ttaaaagaaa aagataaaat ggacgacaaa tagtttataa
     4741 cttaaaaatg ccctcagata agactaaggt tacaaacctt aattcatatt ctgagggctt
     4801 taatatttga agttcttgtg tgaccagcat ccactactaa tataaaatta tttgcagtaa
     4861 cgctaaaatc cgctgctttc aatttcccga aataattaag ttaactaatg agttttaatt
     4921 tataatcatg tatcgtttgt aactcaccat cgacttttcg atatacaata tgatcagcag
     4981 taatttctgt aggactggat acgccaacag ctgctgcaat attgaataag ccttcatgca
     5041 aacttgttac atagtttgtg acacgatatt gcttttctcc aacaatcaat gctttttctt
     5101 tcttcgcatc tgtcgttgca acacctacag gacacgtatt catgtgacat tgttgactca
     5161 ttatacaacc gacactaatc atcatcccac gtgcgatatt tacaaaatct gcacctaaac
     5221 ctagtgcaat cgcaatttta tctggtgtca ctaacttacc agatgccgcc aatttcactt
     5281 tatctcgaat accatatttt tctaacatgc cagacacaat aggtagagct gtaaatagcg
     5341 gtaagccaac accatcttgt aattcttgga atgttgcacc agtaccacct tcaccaccat
     5401 caatcgtaat aaagcttgga tacttatcta gttccaccat cgtacgtaca agtgtttcaa
     5461 tttctgaaac tttgcttact acaattttga atcctactgg tttttgacct aattgctgca
     5521 actgatcgac gaaacgaatc aaatcttcag cattatgaat aaattcgtaa cggttaggtg
     5581 aattgattgt tttataaggt tcaacatttc ggattttagc aatttcttcg tttacctttt
     5641 cagcttccat atgaccacca cgagtcttag caccttgtgc caacttcagc tcaaatgcgc
     5701 gtacgttaga taactgtgca acctctttaa ataaaccttc actaaaatta ccttctttat
     5761 cacgaacacc aaataaaccg ggaccaattt ggaaaatgat atccccatta ccttttaaat
     5821 gatattctga taagccacct tcacctgtat tcatccaagt gcccgcttta gctagacctt
     5881 tagataaagc tgtaatggca ttttttccta aagcgccata actcatacca gattgtccta
     5941 cgatacgttt taaaataaat ggatgtttta aatgttcacc taattttatt gcatggtcat
     6001 cacttaagta atacggatca atctttgtcg gcacacgata ttcttcacga ctaaataaac
     6061 gctcattcgc gattttataa atgaatgttg ataacaatgt tgtattatct actgaaatct
     6121 cattacgttg catcggaaac attgtgttct gtatgtaaaa gccgtcttga taatctttag
     6181 tagtaccgaa gctggtcata cgagagttat attttccagc caaaacgata tttttataat
     6241 cattacgtga aaaaggtttc ccttcattat ccccagaaaa taaatactga cgtaattccg
     6301 gtcccatttt ttctgaaata tatctaatac gtgctagtaa aggataattc cttaatacac
     6361 tatgttgtga ttgtctttta tctttaatta accaaataag cccgataaca ataaccgtaa
     6421 gcatgaatcc tacaacgata atgttaacta taaattgcat gactgtaaga aacgtcatta
     6481 caatacctcc ccccaaaatt tcaattcaat atttatgata caccttacaa aacaaaacac
     6541 aatggaagcg cttcatttta taaaacaatt ttatgatatg tttttcattt taaattttaa
     6601 tgtataaaac atacaataca aagtaatatg tgctaaagta tctatataat acaactattt
     6661 aagaggtata ctatgtcaaa tacaaataaa cattacatag aagaagaata cgctaccgaa
     6721 caatcgcgtt ttttcaaacg tgatattgga tttattttcc tttacatatt tttggttaac
     6781 atcttgccga tcattatcgt ctttttaact tttgggttag tagctgtatt cactcaacaa
     6841 gctccgtggg gtttctcttt tcctatttca atgaacatta gctatttact cgcagttatt
     6901 atttcactag ctatttttcg tctgatgcat gaagatgcgt ttattccaat gatacgttcg
     6961 caaatcgttg ctagtgctaa atataaatgg catattctta tatcatttac actaagtgtc
     7021 gtactctttt tacttttaaa tcatttcaat attttcgcac taaatgtaga ttcctttact
     7081 gtctttgaca tttacccgct cattaaaggg tatggttcca tcagtttaat aactatattt
     7141 tcgttaacca ttatattaaa tactttgatt tgtcaactta ttttccgtca tattttaatt
     7201 caagaattaa gcagattaat acctttaaag attacaatag tattgtccat tatccttgaa
     7261 actctgttct actatccata cattaataca tggtgggaat tcattccagc attgatacta
     7321 gcaggtagtg cgacttactt atatttaaaa tcataccgta attttatggt gagctatttc
     7381 tatcaattag cagttatact cgttttgcat attttcatgt aaaatttttc agagtattat
     7441 ccattatcca tacacatcaa aaagcacact taaaagtcag tatcaaaact cacttttaag
     7501 cgtgctttat ttagatatac tgtcgttcta aaaacgagcc atatagaatg tttcatgtcc
     7561 tagcatgaag cacatgaatc gccatgctca atataccttt taaaatttaa atattcatta
     7621 acttaatatg ctttaattca cttcattaaa gactactcgc tggacgtggt gttggctttt
     7681 tcaagaaact cataatcatt attacaatga ctaacatacc acaaattaga tacatccatt
     7741 taaatcctac taaatcggaa ataggtccca tcaatgcgcc acctaacgat atacctaagt
     7801 ctgcacaggc aataaataaa cctaacaaca tattacgacc tacttttggt aagacgaagc
     7861 ttaagtatga tgttaatgtt gggtacacca ttgcttgcgt cattcctatt aatatcgcac
     7921 taccatagaa aataattgca cctacttgcg gaccaaatgc cactacaaat gacgcgatta
     7981 ctaataatga tagtacagat accatatatt taggatgcca cataccatct gacggaatgt
     8041 atttccttaa gtaaaatctt gccgcaacaa ctgcgatggc ctgtattgtc aaaaagattc
     8101 ccgcattcgc gaatcctaaa ctcactgtgt ataacggtac aaatgtacta actgcaccaa
     8161 atacaatcga tgcaacaatc atgataatac cactgttcaa caactcttta tttttgaaaa
     8221 attgcgcaaa aacagttaca gcgttaaacg gcattttttc aatcttatct gacgtatcgg
     8281 gttcctgttc agcaaaggtc acgcgatagc caaagaatgt tgttgttaat gcgataaaga
     8341 taatgacaat tgcaaatagt gaaatattat ttgcattcca aatacctacg gcaactaatg
     8401 gtccgattaa gtttggaatc gttgaaaata gcgagtacaa tgatacacct tcagaacgat
     8461 gttcctctgg taatgcatca ataataccta gctgtaaaga catagaaaag aatgccgtac
     8521 acacaccttg cataacacgt gctacgaaat aaccttctaa gccagtaaaa ccataaataa
     8581 ttaaagctat ggcattgata atcaaaataa ttcttaatac tttaatggga ccgacacgag
     8641 caataatttg tcctgcccat ggtcgaaata ccattgctgt taacatgtat gcccccataa
     8701 cgataccgat aaccgtattc gttgcgccta aatcatgccc tcgtaaaggt ataaacacgt
     8761 ttaagattgc attggcacta aagaacatca atgttaatat atataatctc aaaaagggcc
     8821 aagccattgc acctttcatt atctcactcc ttagaatgat agttgttttt ctattaattc
     8881 tcttgtataa gcattgtcac ttttatgcaa tgcgcttgtc ggaatttgtt cttctatttt
     8941 tccgttttta aaaataatta attgatcaca taaatacgtg gcagcttgaa tatcatgtgt
     9001 gataaaaata taactcaact gacgcgtttc acgtaaatga atcaataaat ctaatatttg
     9061 tgtttgaatt gacatgtcga gtgaactaat ggcttcatca aacaaaatat atttagggtt
     9121 aatacatatt gcacgcgcaa tcgcaacacg ttgcgcctct ccacctgata acatattagg
     9181 atatttatcc atgtatgcct tagatagacc gacttcttcc aacaatgtaa ttgcttggac
     9241 ttccataact tctttaggtt gtccatcaca ttgacacatc acttcaaata agatttctct
     9301 aacagtctga aatggatgta atgatgacgt ataatcttga aatacagcac caatttgatg
     9361 acgtctcact ttcttcttat gcatcggttg atcatttaag gttacacaac ctttatccgg
     9421 tttctcaata cctaatatca tacgactcaa cgtcgattta ccgctaccac tttctccgat
     9481 aatcgcaatc gtcgcaccga ttggacactc aaatgacaca cctttcacga taggtgttcg
     9541 acgacgctta aaaacatgtg cgctttgata tgacttttca acatctttaa ttttaatcat
     9601 gtacatcacc cctcatcaca tgtttaaaat gatcattaat cttcttcttc gttgataata
     9661 aatacttcgt ataaacatgt tctggatgat gcaagactga ttcacgtgtc ccttgttcaa
     9721 taagctgacc atttttcatc acaacaacac ggtctgcaat cttgttaata accgttaaat
     9781 catgtgaaat gaaaatcatc gcacagtcaa agtgtttttt aatatctata aatgcttcca
     9841 gtacatcata ttgtgtaatt gtatctaaag ccgttgtcgg ctcatcagca atgattaact
     9901 ttggtttcaa agctaacgct aaagcaatca tcaatcgctg taacattcct cctgataaca
     9961 tgtaagggta tgattttaat atacgtttag gatctttcaa acttaaataa tccatatatt
    10021 caatcaatgt cttttcaatt tcttgtgtag acattgacgt atgtactttc atagtctcaa
    10081 acatttgttt accgacagta gttgatgggt caaaggcacg actaccttgt tgcatgacca
    10141 tcgcaatgtc tttaccacgg tactttttca attgcgattc agataatgac aacattgatg
    10201 taccatcaaa gataatttca cctgtcaccc cgagtcgttc gggattcaaa ccaataatcg
    10261 atttacaagt gattgattta ccactaccac tttctccaat aacgcctaaa gtttcaccct
    10321 tagttaatgt aaaattcaca tcactcacga gtggttgatc tgtccaggta tctgtaatcg
    10381 tcaaatgttt aactgttaac aatgtcatga ttgcaccact ccttttttca cagaacgaag
    10441 tttatcttta gaagagatgc ggggatcaat agcaatttgt aaagcatcgg ataagaagtt
    10501 aaatgccatc actataatca ctatggcaat acctggcgca aacatcattt caggatgtgt
    10561 aaacatcact tttctagctt cgttaagcat catgccccac tctgcagtag gcgctttgac
    10621 acctaatcct aaaaatgaaa agccagatat ttgcaagatc attgaacaca tcgagctact
    10681 agagatgata gcaatatctg ctaatgttaa tggcataata tgtttgtgaa taattttcat
    10741 atcattcata ccgattgttt tagcaaatct tacatggtca gaagcagtgt actgcataac
    10801 acttgtacgt ataacacgac agaaccatgc ccaacgcgtc aaaataaatg ccatgataat
    10861 attttcggca cccattccaa acaatgcaat taatgctaac gttacaacat aacttgggaa
    10921 tgccaacata acatcacacg cacgcatgat taaggcgtca acaaaccctt ggaaatatcc
    10981 tgataagaat cctaaaatag atccaataag tacagaaaca aatagcgcaa caaagacata
    11041 taacaaactt ggtctaatcg cataaattaa cctagttaaa atatctctac ctaaatggtc
    11101 agtacctagt agatgttgaa aactcatgcc agcaaatttg tttgctgtat cgatatggtt
    11161 aggatcataa aatgtcacaa gtggtgctgc taatcctaaa aagacatata atacaataat
    11221 gcctaaagca attactgcac ctttatcttg taataatcgt tttaaaatta tcatcgtgcg
    11281 ccctccctta atcttggatt taatagcgca ttaatgatat ctgctaatgt attaaataca
    11341 ataaataata ccgctacaat taatacatat gcttgaatga ctggaaaatc gtgttcaagt
    11401 attgctttta aacttaattg acctagtcca ggccatgcaa agatatactc gataacaact
    11461 agtccaccca ttatcattgg tatagacata caaaagattg ataccgcaac ttgtaaagca
    11521 ttacgcaaca catgcaacat taatgtgata gatttcacac cgcttgctct taaataaagt
    11581 acataatctt catttaattg ttccaccatc gagcgtctaa catttctaaa gtaaatacca
    11641 gcataggcaa tcgtaataac gatcactggc aatatgtaac tttctggacc tgttaatcca
    11701 gaagtcggca atatgtttaa cttcactgaa acgtaaataa taagtattga agctatccaa
    11761 tatgatggta atgcagttag aaagaaagcc actgaacgta tcgcacgatc agtgaacttt
    11821 cctcttttta atgcactaac tacacctaaa ataattgatg taatcatcac cataacactt
    11881 gaaattattg ttaatttcaa tgtattcata aatgctggac caatacgttc agcaactggg
    11941 tcacctgtaa tgtagcttgt accaaaatta aattgcatcg cttcaagtaa ccaattttta
    12001 tattgaatta ataatggatc attgaaaccg tacttctcat tcgtttctgc aatcaactct
    12061 ggtgttacat ttggcgtccc ttgtgcatgt aaaattgtca cagctggatt ttcatttgta
    12121 atatacgtca atagaaatgt cataaaactt actacaatca tcaatggaaa catgagcgca
    12181 atacgtttta agataaattt gaacatctaa ttgctccttt atttatactg catttcattg
    12241 aatggtaatt catactgtga ttgtgtgaat gatacttttt ctaaatcttt tggtgcaaca
    12301 actgtcatac taccgtgtga aatagggata aagatacctt catcatcaat ttgtttcaaa
    12361 atgtttttat aagcgtctga acgctcttta ccgttttgga ttttaaatgc gtcatcaatg
    12421 ctgttgtata ttttatcttt gttctcaatg cctgatgttg cactttcata accatttttc
    12481 gctttaaatg ctgcaatagt actttgtgga tcgtacaata atccccaagt ttggttgaac
    12541 attaagtcat aatcaccaga agtacgacgt tcagcaattt tatctgatgt ttcgccattg
    12601 atgtttaact taatacccat tttcttaaat tctgcttgta agtattctgc ttgttctttt
    12661 tgacttgaag aacctttgtc atagtacatt gccatttcaa ggtttttacc atctttttga
    12721 cgaacatcgc tgtctttacc tttcttccaa ccagcttcat ctaataatga ttctgctttt
    12781 ttaaggtcat acttacgtgt tggcatatcg aaattaatgt ctgttacatt tttcgcaaat
    12841 aattgagttg ctggtttttc ttgaccatct aaaatttctt tggcaatttt atctctgttt
    12901 accatatgac caatcgcttg tctgactgtt ttgtcactca cagcgttatc ttttttacca
    12961 gaattgacaa ctaacatttt cgtattcata ggttgactac gcttaacttg atagtcacct
    13021 gtatctttca attgttttaa agagtctttg tctaagctat ctgtacctct atcatctgtg
    13081 aaggcaaagt tcgtttcacc ttttttcatt gataggaatg ctgtttcacc agcaggcatt
    13141 acttttgctt gtactttgtt aagtttagac ttttcgcccc agtattgatc atttttgtta
    13201 aagtctgcag actcatcttt tttgtgttca cctaatttaa atggaccagt accatcgaac
    13261 tttttaacgc catcttttgt tgtaccgttt ttaaagtctt ttggagacac aaatacatat
    13321 ggacgaggca tcgctaattc agccaatgca ggttgatatg cttctttcaa attcaattca
    13381 accgtgtact tatctttaac tttaacattg tcaattaatg tcgaaatctt taaccaagaa
    13441 tgcaattttt tgttttcttg aactgcgtca atatttttct taactgcgtc agcatcaaat
    13501 ggcgtaccat catggaattt aacgtcatct ctcaaatgga acgtgtatgt cttcccatct
    13561 tcagacacat cccacttttt agctagtaaa ggcttaatac catctttcgt gttacgtaca
    13621 agcggctcgt atatcatact ttcagcagac attgatccac cgtaaacatg cggattcata
    13681 tcaccgatat ctttaaccgt cgtatacgtt aattgcttgt tttctttttt ctcctctaaa
    13741 cctttattac cgccacaacc agttaaaatt agccctgatg caagtaacat tgcactcatt
    13801 ttagttagtt ttctcatttg cttttcctct ttctaaattg ataagttgca ttacttaatc
    13861 aaatcgtaat gattattttt ctcaattatt tgcttatttt tatgtaaatg tcaaacataa
    13921 ttcaataatt tttttctatt ataaaacttc aaacccttat tatgaaagcg ttctattgat
    13981 ttccaaaaat tttgtgacga gtgctttatc tccttcaaat agatttgtat taaattgaga
    14041 agataagtgt tgatcttgat gcatatcctt gtacgcctgg caacttgctt catagcgagt
    14101 taggaactga tcaatcattg gcgttttgat acctagcatt ttcccaatat gctgaatcat
    14161 cgccgttctg taataatctt cacttggcat tcttggaatt tgaacaacat cctgttcatt
    14221 tttatagact tgcttaaatg gtacagctga aaaatcaaag taatgtccgt tttcgtctgg
    14281 ctgtgaaaat ggatcaatga ggattgcggt atatcttaca taaagcagat attcttgtaa
    14341 gatatctggc aagatttcga aatgctcaat atcaccttca tccaaagttt caggacgtac
    14401 tggataattt tccttcacca taaattgaag caggttgact gacggcactc taaatgcttg
    14461 taaaataacc atcatttcct tccacattaa acgcatttca cggattagtg tcatcgttat
    14521 cggtccttca ggaaataact tatacacata aaccggtaca tctgttcctt cgaaaatggc
    14581 tttcaatgaa aagtcattca taaatagtgg tgggtgcaca taaagcgaac tgtttcgcgt
    14641 ttcagcatgc agtggcgatt caacgacttc taattgaatc ttcaattgct cagctaaagc
    14701 agagattcgt tgacacattg ttgagtttga atgtgtcgat cccatgtaca atttcttttt
    14761 tacacctgtt gtcaacacat gattaggcgc ttctttatca acaatacgtg tatcgccaag
    14821 ataagttgag aatgaaatca cttcgatatc tttattaaat ttagacataa attgttcgac
    14881 aatcatttgc gaaccaaatg tcggtgatat taaaatgaca tgtttgacac tttgcaaagt
    14941 ttctaacgac aattgctgta gtgtgtcata ataagcatct gctgtgcatg ccatgacaac
    15001 cgtttcgtat tcacccttaa cgtttttaac atctttatac aaacgattaa tttcaaactt
    15061 accttccaga tgttgatgcg cctcgttttg tattttgact tcaaattgtt tcgctttttt
    15121 atacgcttga tataagcgtt ttgatttttc tgatgttgag gcacgtccaa ccatatcaat
    15181 ctcataatct gattttaaat agcaaatatt cgctaattgg attgcgaccg gaccagtgcc
    15241 tatcattaat aatttagaca tccgtaatac ctacctttat agctgctttt ttataaagtg
    15301 ctatatcaaa aatttgctgt ggtctcatat gtttattcac acattgccac ttatcttccg
    15361 ctgtttcttg tgacggataa ttaaatattg ctttgatgcc atcaccaaag cgcattgcaa
    15421 ctacgacatt ttcatttgtt aaatcatata attcttctaa aatgctgtac tttaaaggaa
    15481 ttgtcgagct gaatatgata tgcgtcacat ctttgatatc tttaagttca gatacctttt
    15541 gatccgtaat tgttatatct tcatttggtg ctaagacgtt aacgattctg cgccctaggt
    15601 caacggcttg tggatcaata tcaataccga taactgaagc acctgtttct tttgctactt
    15661 gaattaacgt cattggatat gcacctgaac caactaacaa taatttgtca ttgctagcta
    15721 tactacattg tccaaactct tcatcaatac aatgttctat attgtcaaag taacctgtgg
    15781 tagacgcctg tccgtctaat agacgtctcg ctctaatgac ttccacttgt ttaacacact
    15841 gcgctgtaat atattgcagt gattttatta attgtgcttt ttcttcaacg tcacgccaag
    15901 cattaaattg ttgttcataa ataggattta aaataaattc actatagtca tccatcaatg
    15961 tttctaatgc ttcgatatat tgatcgtctt gtaatacacg ctcgtaatgc gcttcaaact
    16021 tttctaaata ttgttgtaat atcaatttga tttcattatt aaagttattc attgtaggct
    16081 ccttattcta tatatgcttt tcctgtagct acagttgtaa cctgtccttt aattgaagtt
    16141 tgatatccca attgatgaca tcgctttgat gtcactaaaa tactgccccc tggctgatgt
    16201 actgtaaaat ctttgcatgc gtcattacgt tgataattat taaaaacccc aattgatgct
    16261 gtaccagaac cacagctatt ttcccaaatt aaactttgaa tttctggtat atagattaat
    16321 ggctgtaaaa attgacgttg ttcatcaaaa agcatcatac ctactgtttt atatttgtga
    16381 ctccattgtt gctcacgcac aaacgcttca accaaatgtt gaatttctgt tgttacttgt
    16441 ttaactggaa tcacataatg tacatatgtt tcataaataa tttctattgc tttccatgaa
    16501 tgattaccca tattaattgt tgttggcaca acacgatggg cttgtggcat ttgaacttca
    16561 tagtattggc aatcatgaat tgcgcattgc actaaatccg aacagccaga caccttcacc
    16621 ttaaactgtt ggtctttaag caaatgactt tcctgcaaat gatgtatata tgacatcgtc
    16681 gcattaccgc aaaattcatt accgctcata actaagtgaa aatcattacc atcatcattt
    16741 tgtgttgatt ctataaagcc tacctgttca cagcatacat gtgttgcggc catcaactga
    16801 ttggcgatag atgcatattc actagcatca tgttttgaat gaacaagtat cgtcatattc
    16861 cccgaaggat tatacttaga aaattctata acctgccgat tcatacgaca ctcctttaga
    16921 tgtattttta gagcctctgt aattttaatt actagaggct cttatgcagt tgttgcgaag
    16981 caaacaactg tattcctcta aacctgtaat tttttagaag atgaacctaa tagctctatc
    17041 tagtaggtaa gtcatgctaa ttcgcaaaag cgaaaaccat ggctcttatg cagttgttgc
    17101 gaagcaagca actgtattcc tctaaaactg taatttttta gaagctgaac ctaatagctc
    17161 tatctattag gtaagtcatg ctaacccgca aagtggaaag catgacttag taatcggttg
    17221 ttgtatcaaa atgcaaccgt aaaccttatt taaagttgct tcttgtggct ctacaagcga
    17281 atgcagttgt ccgttaacta cattcactta gatgctttta ctgttttcac ctcaactaaa
    17341 acttcaaaaa agttgcagaa aacaaatcgt aactattacg atttgattat atactatatt
    17401 agttgagaat cattgtcaat aaaggttgta aatgaatgca catttatatt ttgataatcc
    17461 ttccataaac ttcgtattct cagcacattc aagtcttttt gaaaattttt atcaataatt
    17521 gagtagaagt tccgttctag tcagttcaaa attttacgta agttgtctct gcgtattgct
    17581 ttagtgagaa taacccacac ttgtggaaac gtccttttgt taatctacaa tggataccct
    17641 tgtctttcgc taacatttcc tattaccaat cctgtaacgg attttcatcg tcaagttgtt
    17701 gcccatacaa tacgcaccaa aaaagctttg tacaatttcg tacaaagctt taaaaattta
    17761 aataaaaata tcattgtttt aatgaactag ccatatcaga ttttatttcg tttgctaata
    17821 cttgtaattc agggaagtaa ttattagcaa agccaattat tattttattt tttacaaacg
    17881 tgttaatctc tcgatcttct ggaatcgtat tttctattaa attcaaaagc tcactatgac
    17941 ttatgttctc tatacttact gtatttaaat attttaaaat cacaagatac aattcatcaa
    18001 atacttcatg ttcaaaatca aagtccaata ataataaact aacggaatta gtttctaact
    18061 gattatctcc aattttatct gcaatctctc ttatagcttg atatagcaat ctaaaacttt
    18121 ctttttcttt taacataaaa ttctccttaa tttattagaa tagataaaat acagcttatt
    18181 ttaaagatac tccaaaagtt tgaactcgag attctgataa attagatgca cgacctacaa
    18241 tacgttaaaa caagctttaa gcaatacact tcaaatgaac aatatgtgat tttcaaagat
    18301 taattaatct ccgctttaaa tgtctttcat tgcgacaata tgcatacatt gcctacttca
    18361 tgccaaattc ttttccactg gatatcgatt ttaaataatt attccaatgt ccgcttccac
    18421 gaatcatcac ttaacatctc gccaggccat gtgtaagcca tcacaccacc atcaattcga
    18481 atcgtctctc cagttatgaa tgaactgtcg tcagatgcta agaagactac taatttagca
    18541 acttcttctg gtttacctaa acgtcccagc ggagtcatcc atttttgatt ttctctaaat
    18601 gttttacctg catcatcctc actcgtacct gtcagtttat ctactaacgg ggtttcaatt
    18661 gtacctggtg caatcgcatt ggctcgaatg ctatcacggc catactcaat tgcgattgat
    18721 tttgtaaaat taatcactgc acctttcgca gcattatatc cagagcgata caagtctgct
    18781 gcttgtccgg aaaatgaaga cgtattaaca atagagccac cttgattcat cattaaaggt
    18841 aacatcattt tcgtcattaa aaatgtccca cgcatatcta cattcataat cttgtcatac
    18901 acatctattg gatactcatg aattctatca gccgcattat ccacaccggc attattaaac
    18961 aacacatcga ttcttccaaa ctgttccttt atgtcagaca caaagtctac cacttgttgt
    19021 tcgcttgcat tatccacatt atacgccttc gcattgtcac cattactttt aattttatcg
    19081 acagtctccg ataccgcttc agctatgtct accgccaata catacgcacc ttattgagct
    19141 aaagcgattg cagaagcttg accgatacct gtacttgctc ctgttacgac tgctacttta
    19201 ttttccaaac gtttcattca gtcactccta tacaacatat cttaaactta cagtccttat
    19261 tttccactgt tcgatgcttc ataaacctaa tagataagtc ttcaggcagt cttaactact
    19321 ctgctataca ctttctattg aataactcaa aatatttaac aatattagtt tttttatttt
    19381 ctgaaaattg ttacttttga gagtattttt tgttacactt taaatattta acaaaggggg
    19441 gaataattga tgacatcaaa acatcaacaa aaggggtcta tcgtcaatcg tttcttgaat
    19501 agtgttgaaa aaatcggaaa taaattgcca gatcctagcg tcttattctt tttaatgtgt
    19561 gtgggcttag ccattatgac atgggttatc tcattattta atgtatctgt taagcatcca
    19621 ggtacgcatc aaaccattta tattaaaaat ataattagcc atgatggatt tacgatgata
    19681 atgaatgata cgattaaaaa tttctcagag ttcccagcat taggcttagt actagcagtg
    19741 atgattggta ttggtgttgc agagaaaaca ggatacttcg ataagttaat gatttctgtt
    19801 gtgaatcgcg caccacgctt cttaatttta ccgactatta tattaattgg tattttaggt
    19861 agtacagccg gcgatgctgc gacaattatc ttgccgccgc ttgcagcaat gctttttatt
    19921 aaaattggct atcaccctat cgctggacta acgatggcat atgcttccgc tgttggagga
    19981 tttgcagcaa atatagttgt tggtatgcaa gatgctttgg tctattcatt tacagaaccg
    20041 gcaacacgta tcgtttcaga ttctattaaa acaaacgttg ctatgaactg gtactttatc
    20101 gcagcgagtg tcgttgtatt acttcctacg atattgctag ttacaactaa gctcattatt
    20161 cctagattag gaaaatatga tgacagttta atgcatgatg accatgaaga aacatcttca
    20221 catattactg acaaagaagc acatgcttta aaatgggcaa atatcagttt catagtcaca
    20281 attattttat taattattac agccattcct gaacatagct ttttaagaaa tgctaaaaca
    20341 ggcagcttac tagacgatgc gccattaatt aacggtgtcg gattaattat tcttgtcgta
    20401 tttttagtac ctggattagt ttatgggatt ttaagcaaag aaattaaaaa tacaaaagac
    20461 ttaggtaaaa tgttcggcga tgctgtagga tcaatgggaa catttatcgt tattgtgttt
    20521 tttgcagcac agctacttgc gtatttaaag tggagtaatt taggaattat cgctgctgtt
    20581 aaaggtgcca aattattaga acatcaaaac ggtattgtat tgatactagg tattattgta
    20641 ctgagtgcaa tggtcaacat gttaatcgga agcgcatcgg ctaaatgggg tattttagga
    20701 ccgatattcg taccaatgtt aatccttatc ggctttcatc ccgcattcac acaagtcatt
    20761 taccgtgtag gcgattcaat taccaatcca attacaccga tgatgccgta cttaccttta
    20821 ttattaactt atgcacaaaa atacgataaa cgcatgaaac tcggagcctt actttctagt
    20881 ttaatgccgt attcaatcgc gctaagtatt gtatggacag tatttgtcat catttggttc
    20941 ctattaggta tccctgttgg accaggtgga ccgatattcg ttaaataaca gtattcaaag
    21001 ggataaatta aaatgccact atacaagatt tgacctgtat agtggcatga tttgttatga
    21061 tatagcgttc gagatgaaac tctgcattta tatgaacaat tatagtctat cactaataat
    21121 atttaatctg ttccaaccgt taatttggtt tacaacaaag acaagatcaa taatttgttc
    21181 ttcatcataa aatgatttta gccggtcaat aatttcaaac ttcttaaagt ctttgattga
    21241 atttaacatt tctgcaaatt caagcgtcac tttttcttga tcagtaaata aatctaaatg
    21301 tctaaaactc aagacttcat caattttcat ttgtgttaca cccaattcct ttaattcttt
    21361 tttatggata tcaacacaat aatgacaacc gttaatttta gaaattaata acttaatcaa
    21421 tgcactaagt tcatcattaa cgggtgattg atgaataaac ttttcacctt ggctcattac
    21481 agacattaac tctccatttt gtttcttgta attatacggc atttgcaatc tctcctttac
    21541 attgtttaat accaatccag tgatactaca cttcgaacaa tattggatag aatttgaaat
    21601 tctgtataac atcttgtcaa tctatgcttt agttaaaaca tttagcactt atatttaaaa
    21661 aatatataaa atatgaaaac agattgaaag gatattatac cttgctctac ccttttttat
    21721 aaaaaatcac acacatttga gaaaatttga taatgtcaat aaatcacgtc atcgacattg
    21781 ttattcgata tatattgttc ttataatggc caaactatta ttccatttaa attaacgtgg
    21841 ttcgtttgtg ttaatgtact gtacaaaact ggggaagtat tggtgatgat gaagtgattt
    21901 atattaattg cgaaacacct tcgatagcaa tgacatagat tattggaaga ttaaatcaaa
    21961 aataaagaag accctagtgg ccttcttttt tatctaattc ttctttgatt ttttctggtg
    22021 attttctttc atgtgctggt tttaataatt tatctactcc ttcacttttt atcatagcgc
    22081 caccaaattg ataattatgt tcaggcgatg cataagcagt aaaatcatct tctttatttt
    22141 cattgatgta tccttcaatc acagcacttc ccataggact tgtttccaag tttgtgaaat
    22201 gtacagattt aatcgtgttc gtttctttag tattatgctt aagatagagt gtaatacgtt
    22261 cttgttgttc tttgtagtaa atcgcttttt gtttttcttt ttcatcatat ttcattttaa
    22321 aatgcatgac cgtagaaact gtacatatac acaatatgac accaataatt ataaaaacat
    22381 gttttttgga cattaaagta actcctaact ttagtgactc ttctttttat ttagttcttt
    22441 ttttatatca tctggtgatt ttaactgatt ggctggcttt agtaactcgc ttaatttttc
    22501 actttctatc atagcaccac caaattgata attatgttct ggtgtagcat aagcagtaaa
    22561 attatctttt ttgttttcat ttatgtaacc ttcaatcaca gcacttccca taggacttgt
    22621 ttccgagttt gtgaaatgta cagatttgat tgtattcggt tctttagtgt tatgcttgag
    22681 ataaagtgta atgcgcgctt gttgttcttt atagtatatt gctttttgtt tttctttttc
    22741 gtcatatttc acttttaaat agatacctgc aacactaatt aatatgatta acataatact
    22801 agttaatatt aaaattttct ttttcgacat ctatcaccag ctcctaaaat gtggtggaat
    22861 tttatacagt ttacatattt atgatactac aaaacacact cttacaaaga aaatctataa
    22921 ttttaatcta ggtcaaggaa aagcagccaa aagtgtttat ataagatcaa cgaaatattg
    22981 cgggtataaa gtggttaaca gataaataca gtggaaattg tactaaaaat tcaacttttc
    23041 atttttatat gtaagtatga ttaacttgaa aacaaaatta aaacggccgc atagttttag
    23101 cggtcgttct ttttagactc taattccttt tttatctcat caggtgattt ggtttgatgt
    23161 actggtttta ataacgtgct taaattttta cttttgatta aacttccacc aaattgataa
    23221 ttatgttctg gagacccata tgcaacaaaa tcatcttctt tattttcatt tatgtaacct
    23281 tcaattactg catcgcccat aggtcctctt tttaaacttg tgaaatgtac agttttgatg
    23341 gtattgggtt ctttagtatt atgcttaaga tagagtgtaa tacgctcctg ttgttcttta
    23401 tagtatattg ctttttgttt ttctttttcg tcatatttca cttttaaata aatgactgat
    23461 gcaactatac atatacataa aatgacacca ataattataa aaacatgttt tttgttcatt
    23521 aaagtaactc ctaaaatgtg gtggaaaatg aaaaaatttt tataatctat aattatgaac
    23581 attacagatt ataaaccata acactaacat cgtcgccttc attaacttga ttgttaaaat
    23641 cagcaattac tgagaattgt acaaggaata attgcctatt atgccctcat gtaattattg
    23701 ccttactaac attaacaaaa tcgatagcta ttacattaaa tgcctatacc ccagacctca
    23761 aacacctttt tatacaggac gcactgtaat ttcattcacg ttaacgtgct ttggttgtgt
    23821 taatgcatat aatactgctt ctgcaatatc ttgtggttca agttttttac gatctgttgg
    23881 attgtatgcg gcagttatgg ctgtatctac cattcctgga gaaatgcttg ttactttaac
    23941 gcctgtcttt gccaactctt tttctaatcc ttgagtaata gtgtgaactg ctgctttcgt
    24001 cgcactataa atcgtactac ttttcgttac ttcaaagcca gaaatagatg caatgttaat
    24061 aagatggcca cttgattgtt ctaacatagt tggtaatgca gcctgtgccg tatataaagt
    24121 gcctttgata ttcacatcaa tcatactatc ccactcatct acttgataat cagtaatctt
    24181 agacgacaac atttgccccg cactattgat aacaatatcc aaaccaccga atgtttgttg
    24241 tgcaattttt atcaattcat cgacttcttc tttattcgtt acatctgttg gcactacctt
    24301 cacactatct tgtgacaatt gattcgctac gttttgtaat ttttctttat ttctacctgc
    24361 taagacaact tttgcccctt cttcatgtag taatgttgca attgcttctc caataccact
    24421 acctgcacct gtaactactg ctactttatc tgttaatact gtcataatga tcgactcctt
    24481 tgattctttt tattttttca gggtaaatca taaatacata ttacttttaa aaagcgtatc
    24541 acaattcata taacggtcat aataactcgc ttcattttca tagataaatt acattacaag
    24601 ccattcgaaa catacaatta atcgttgctt atatttttta tttttaaaaa tgttgaaaaa
    24661 tcgtcacttc tttattgtaa aaacattata ttagtaataa agttaatact gtgatttatc
    24721 attcgattga atgattagag ggaggaataa aacgtgacat atcatgagcg tgttttagca
    24781 ttaagagcag aaagtaaaag aaccgcattt gattttcgat tcgaagattt atttagcaaa
    24841 gaagaatggc taagtatgtc tcttgcagaa agacaaaaag ctgaaaaagc atttcgacac
    24901 gaagttaaaa atatggacga tgtaagaatg cccttctcaa gtgtccatga cgcccaagta
    24961 aaattatata atgttgtata ttcttataac ggcattaaac gtaattttaa acaagttgaa
    25021 aatgaaggat tctaatatca tttcgtttat atatagcaga catgatagaa ttttatatgt
    25081 aaatcttgta ggtaatcgtt ttaaaaataa tataagtatg actaaagcca catccaatat
    25141 aggacgtggc ttttagtatc gttccagatt tgtggggagt tagggtttac ttaattaaag
    25201 gggtctgccc tcaattgctc accaacgagg gcaagttaca tcaatcacac ttcaattgcc
    25261 gccgactagg ggtagtaatc attggcaata agaactagtt agtgactaac gatttacgtt
    25321 ccatagcaaa gtgatacaaa cgctcagcat caatgtaagg catagaatca atagttaggt
    25381 aaccatcttt gatgtcacca attaatcctt gatttacacc agtgttcacg taaatatcat
    25441 agctacttac gtctgagaaa ataagcgctt caatctcttt tctcataatc atcactccaa
    25501 tgtttatata gtatttatat aaactctctc gtctctctct atttattaac ttcttacaag
    25561 tctaatatta catgaatttc caaataaata aagggatttg tgatgtattt cacaaattta
    25621 tcactatttt ggaaaattaa gaaatattta attatataaa agtttaataa gtcagaaaat
    25681 atgataaaat gtagatgttc tttagacatt aaaagcttct aacatgatac ggaatatgag
    25741 gttcctgtat cacattagaa gcttttttgt tgcggtgctt atattaataa tggcatgaat
    25801 gaacgcatgc tgtcttagct ccaagaatca tataagctat taaacttccg ttctttgaat
    25861 attttttaat ttcttactaa tatcatccag ttcattcttc gcctttttaa cccaatctcc
    25921 ttgagctaca ttatcaaatt cacctttaaa ttttttgaaa tggctaccta tatttcacag
    25981 ctcactttag atatcgaact tgtttcttca gagttacttg ttatattacc aggttttatt
    26041 tgatattcag tttgactcat accttgtatc ctcacttgga gtatattgta cagaatctgt
    26101 aaaataaatg ttttcttctt tattttcgac aaaggtaaat tcaagacttc tagaacctac
    26161 ggatgaacct tttaaatctc catcgccttt caataatagt ttcggcgctt gtttggttgg
    26221 aatatcatat ctttttctta actgttggac attataatca tcattattca attgatattt
    26281 tgccgaataa cttggtacat taggattata tgaaatatca ccatctttat aatcattaat
    26341 atctttaaag ttgccatatt gtacaaagaa cttaaagttt tcaatctctt tttttaactt
    26401 gtcattcggt agtggcttcg ttggtatgat tttattatgt tccattttta ccggatacct
    26461 tttttcatca tcctttggtc tgccgttact gtcatctgtc atttcactta taaaataata
    26521 cccttttgtg gttctagtat tgcgattgat atagagcacc attcctctcg tttccatatc
    26581 cttacctttt ggctcgatta ccatttcaga attaactatc caagtacctt tatcaccctt
    26641 tttaaattct tgatctcgaa agccttcttt atcgtaaaaa tcatcgagat ttttggttgg
    26701 atataatttt aatgtttgat taaatgtgtc tttaatttgg gcgtttcgac catttgtttt
    26761 tgtcataatg acataaccta caatcaatat aatgagtaat accaagcata taccgagcgt
    26821 taatttcttt gaatgaatca tcatttctcc accttatatt tttaatattg actcagtttt
    26881 taatatttac aactaaagcg aaaaattatt ttgaacactt tatgaaattt ttatttcaaa
    26941 cttctattaa ccctattcag taggtttgaa attaatacta tcagaaaaat acacattttc
    27001 ttctttattt cttataaagt taaattctag ttctttagaa cctacggatg agccttttaa
    27061 tcgccatcac cttcatacag tttgaagtca tatttaccaa ttgtaaatga cgactagatg
    27121 atatatagtt caagaaacat caaaattcgt taaaacataa tcaaatttta ttatgttcaa
    27181 aactttattt tccaaaaaat aaaaaagaag ttaaacaaag attggttgct taacttccat
    27241 tattgaattc attagtccga tttgacatag atcccgaaaa ataatggcta atagccactt
    27301 atagtcgaaa ttatgaacta tataattcat ttattattaa atggattata tacttattgt
    27361 gtttcttaat acctttttat actttaatat cttgaatttt ttctaaatca ttactaatat
    27421 cttttaattc gtctgtggca tttttcaccc aagccccttg tgccgcattt ttaaaatcat
    27481 cttcaaattt tttgaaatga cttaccattt ggtcaagtaa tattttctca tcacttttca
    27541 gcttattttg atgatcatga tgcatacgaa catgttcagg cgcaataacc tcactaatct
    27601 gttctttttc cttcatttgt tccaatactg ctaaatctgg taaaccacta aaatcaagtc
    27661 ccacgcttat tcatctcctt caattctgtc agattgtttt agatattctc ttcttaactc
    27721 atctttataa tcttctaatt tcatttcgtg atgtcggata cgttgattcg tttctctatc
    27781 gaaagattct ataatacgtg tcatcctgat catagcgtct tcactataat tcattttatg
    27841 tttgagatat aagaaatgat catacatttg ttcacatttc ttgcgtgttt gatgtcttaa
    27901 ttcatcaatt tgattgaatg catcattcaa ttgttttctt tcttcatcat aggcattttc
    27961 aagttcatta atatttttat acgtagtaaa cattacatca tcccatcaat ctggctcgct
    28021 aacatttggt cattagaaac aattgcttcg atactctgtt taatttttgc gatatagcca
    28081 ttacaatttt tataaacatc atttaatttc tttatcttat catcaatttt tcttttggga
    28141 tctgtttcaa gtttactttc atacgcgcca ccttttctta attcatctat aacctcttca
    28201 gaggttaatt tttcaccaat ttcatttcca acttcttgcg cttttttcca gttgtctcca
    28261 aatttatgtg ccatcgcgtg atacattttt tcaaatgttg gctttcttca ttcactaatt
    28321 gatttaagcc ttcggcaatg gttagtgctg ttaaagcttc taataattgt tgttgggagg
    28381 aagagagtga tccacccgtt gtttgaatcc aattcgctct taacgtctct actttatgta
    28441 atctatgcct cgtttgttta cgaacggatt ttaatgcttt attattttcg tcttggtagc
    28501 ctttaacttt gtttaattca gctaagatta tagcctgtgt tctgctcatt aaaataccac
    28561 tcattgcatg gccttctcca tttttaagta ctattttttc tccagcagtt tcatataaat
    28621 gattgcggac acctgcatct aattcgtctt catcagacac aaatcttaca atgtgaccat
    28681 cgtacttttc aatcaatttt ttaagttctt cttgatcggc ataaaggccg ctcacatctt
    28741 tgatcgctaa tggagctgga ttatacacaa cgatatgttt aatatcatta ctcataccta
    28801 aaatcatcgc atctctaccg cccagcgaat gtccggtaat aatatcaata tcatagtctt
    28861 ttttgatatt tttgataaag tcttgggtat ttttataatg tggatcttta tctgtgacgg
    28921 aatgaaggcc aatattgaca tcggccccaa tatcctttag cgtttcactc acatctatat
    28981 atccttgata agaaggaaca ccaaatgttt gttttaatat tgcgtctttg tgtacattag
    29041 tacctgtcat acctaaagta actttgccag tgtctttatt taaaaaggcg cttgtagtcg
    29101 tgcctgtttt ggggtccgta taacttttaa gatatgaaag atttttaggg aatttatttt
    29161 tttcttgtaa ctttttaatt tgtttatcaa ttttattttg ttttaaacca ctgttatttg
    29221 cgttttctat ttcataactt atattagata ctgtacttgt ttcttcagag ttacctttta
    29281 tattgccaga ttttatttga tattccgttt gactcatgat ttatcatcct cgctaggtgt
    29341 aaattcgacc gaatctgaaa aatagatatt ctcttcttga ttttctacaa acgtaaattc
    29401 tagatcctta gatcctacgg atgagccttt taaattgccg gatcctttca attttaattc
    29461 gggcgcttgt ttggttggaa tatgatatcg ttttcttaac tgttgaacat tatagtcatc
    29521 attattcaat tgatactttg cagaataact tggcacatta ggattatatg aaatatcacc
    29581 atttttataa tctttaaaat ctttaaaatt tccatattgt acaaagaact taaagttttc
    29641 aatctctttt tttaacttgt catccggtat aggctttgtt ggaataattc gattattttc
    29701 catcttgaca ggatattttt ttctttacta cgtgaatatc ctttactatc ttcagttatt
    29761 tcggtgacaa taaaattacc cttcgttgtt ctagtattgc gattgatata gagcaccatt
    29821 cctctcgatt ccatattttt cccttttggt tcgataacca tttcagaata aataatccaa
    29881 gtccctttat ctcttttatc aaattcttga tctcgaaaac cttccttatc gtaaaaatca
    29941 tcgagattct tggttggata tacacttaat gttttgttga aattttcttt aatttgagcg
    30001 tttcgaccat ttgtttttgt cataatgaca caacctccaa tcaatataat gagtaatacc
    30061 aaacatatac cgagcgttaa tttctttgaa tgaatcatca tttctccacc ttatattttt
    30121 aatactgact caatctttaa tttacacaac taaagcgaaa aattattttg aacactttat
    30181 gaaattttca tttcaaactt ctattaaccc tattcagtag gtttgaaatt aatactatcc
    30241 gtaaaataga tgttttcttc tttattttct ataaatgtaa actctaaatt tttgtgtcct
    30301 atagatgatc cttttaaatc accatcgcct tttattaata atttaggtgc tttcttagtt
    30361 ggtatatcat acctctttct aagttgcttc acattgtagt catcattact taattgatac
    30421 tttgctgaat aacttggcac attcggatta tatgaaatgt caccatcttt ataatcatta
    30481 atatctttaa agtcaccgta ttgtacaaag aatttaaagt tttcgatttc ttttcttaat
    30541 ttatcatcag ctatcggttt ggttgggata attttattat gttccatttt tactggatat
    30601 tctttttctt tactacgtga gtatcctttt ttatcttccc ataattccct cacaataaat
    30661 tcaccttttg tcgttctggt attgcggtct acatacagga ccaatcctct ggattccata
    30721 ttctttccat ttgtttctat tgtcatttta gagtgaatta tccaagtgcc tttgtcgccc
    30781 ttttcaaact cttgatctcg aaagccttcc ttatcataaa agtcttcaag atttttagtt
    30841 ggatacaggc tcaacgtttt gttgaagttt tctttaattt gtttatcttt actgctttct
    30901 tcctttttca ttccgcaagc ccctataaaa acagctaata atactaaata cagccagagc
    30961 ctcaacc
//
LOCUS       DAMQWL010000019        30469 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.019, whole genome shotgun sequence.
ACCESSION   DAMQWL010000019 DAMQWL010000000
VERSION     DAMQWL010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 30469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30469
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.019"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            81..776
                     /locus_tag="PF788_000790"
     CDS             81..776
                     /locus_tag="PF788_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDG6303064.1"
                     /translation="MDVLTIEHLTKKIGNKTILEDVSFKLKRGQIVGLVGANGAGKTT
                     LMKVILGYSSFQSGNFNVINSKDSKSNIGALIENPGIYPFMSGYENLKLLNESKNTQD
                     IDKIVSQLHMDEYIHKKAKTYSLGMKQKLGIAIAFLNKPQFIILDEPMNGLDPKAVRD
                     VRELIVQKAQEGVTFLISSHILSELVKITNSILIINKGKIVTETSEEELKQFKDNDLE
                     NVLLEIIEREDQA"
     gene            778..1548
                     /locus_tag="PF788_000791"
     CDS             778..1548
                     /locus_tag="PF788_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303065.1"
                     /translation="MGTLIKQECFKLFKKKSTFIAPIVFILLMVAQGYIATKYNEIFT
                     PQESFTSAYNGFSWFAFLLIIQASTIISMEFHYGTIKNLLYREYSRTTMIVSKIITLF
                     IISLIYFVITIIASIVIGSLFFNDLNIFESSGNQLSLLNQLLLVSLGTFVGVWLVLSL
                     TLLLSSATNSTGVAIAVGIVFYFASSILAVIQTALLEKIDWLKWNPINMMNIMLQTVE
                     KGFSKSTKLELHELFIGNIAYISIFLILVVFIFKKKNI"
     gene            1921..3885
                     /locus_tag="PF788_000792"
     CDS             1921..3885
                     /locus_tag="PF788_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphatase"
                     /protein_id="HDG6303066.1"
                     /translation="MTQITEKELKKKYLDLLSQNFDTPEKLATEIINLESILELPKGT
                     EHFVSDLHGEYEAFQHVLRNGSGNVRAKINDIFKERLSTKELNDLTALVYYPEDKLKL
                     IKSDFQNCGQLNVWYITTIEHLIELIKYCSSKYTRSKLRKALPKQYVYIIEELLYKSN
                     EYQNKKSYYETLVNQVIELKQADDLIIGLAYSVQRLVVDHLHVVGDIYDRGPQPDKIM
                     DTLINYHSLDIQWGNHDVLWVGAYAGSKVCLANLLRICARYDNLDIIEDAYGINLRPL
                     LTLAEKYYDADNPAFKPKKRPDKHERLTQREESQITKIHQAIAMIQFKLEIPIIKRRP
                     NFEMEERLVLEKVNYDTNEITVYGNTYPLKDTCFQTVNRDNPAELLPEEEEVMNKLLL
                     SFQQSEKLRRHMSFLMRKGSLYLPYNGNLLIHGCIPVDENGEMESFEIDGHTYSGQEL
                     LDVFEYHVRKSFDEKENTDDLSTDLVWYLWTGKYSSLFGKRAMTTFERYFIADKASHK
                     EEKNPYYHLREDVNMVRKMLSDFGLNPDEGRIINGHTPVKEINGEDPIKADGKMLVID
                     GGFSKAYQSTTGIAGYTLLYNSFGMQLVAHQQFNAKEKILSEGIDELSIKRVVDKELQ
                     RKKIRDTNIGKDLQAQIDILKMLMHDRYLD"
     gene            4229..5308
                     /locus_tag="PF788_000793"
     CDS             4229..5308
                     /locus_tag="PF788_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001566820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303067.1"
                     /translation="MRILKESIIVAFAFVGVVVGAGFATGQEIFQFFTSHGAYSISGI
                     IVTGLLITLGGMVVMHTGHHLKSRNHSDSINYFLYPSIARGFDIILTMFMLSLAIIMT
                     AGGASTIHQSFNLPYWLSALILVAFILATLFLKFDRLIAVLGGVTPFLIAIVIMIAVY
                     YFTTSHLDFTAANNDAQIHKQKSLSPGWWFDAINYASLQIAAAFSFLSVMGSKVKYRD
                     STLYGGLIGGLIITFLLMMINLGLISQFDKIKHVDLPTLKLATQMSPSIGIIMSVIMI
                     LVIYNTVVGLMYAFASRFSVPFSRRYFIIIITMAVITYISTFIGFISLIGKVFPIMGL
                     FGFILLIPVLYKGLIKRITGKSHID"
     gene            complement(5413..6006)
                     /locus_tag="PF788_000794"
     CDS             complement(5413..6006)
                     /locus_tag="PF788_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6303068.1"
                     /translation="MEHIFREGQNGAPTLILLHGTGGDEFDLLPLGEALNENYHLLSI
                     RGQVSENGMNRYFKRLGEGVYDEEDLAFRGQELLTFIKEAAERYDFDIEKAVLVGFSN
                     GSNIAINLMLRSEAPFKKALLYAPLYPVEVTSTKDLSDVSVLLSMGKHDPIVPLAASE
                     QVINLFNTRGAQVEEVWVKGHEITETGLTAGQQILGK"
     gene            complement(6028..6996)
                     /locus_tag="PF788_000795"
     CDS             complement(6028..6996)
                     /locus_tag="PF788_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009560906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HDG6303069.1"
                     /translation="MINNHELLGIHHVTAMTDDAERNYKFFTEVLGMRLVKKTVNQDD
                     IYTYHTFFADDVGSAGTDMTFFDFPNITKGQAGTNTITRPSFRVPNDDALTYYEQRFD
                     EFGVKHEGIQELFGKKVLPFEEVDGQVYQLISDELNEGVAPGVPWKNGPVPVDKAIYG
                     LGPIEIKVSYFDDFKNILETVYGMTTIAHEDNVALLEVGEGGNGGQVILIKDDKGPAA
                     RQGYGEVHHVSFRVKDHDAIEAWATKYKEVGINNSGIVNRFYFEALYARVGHILIEIS
                     TDGPGFMEDEPYETLGEGLSLPPFLENKREYIESEVRPFNTKRQHG"
     gene            complement(7074..7508)
                     /locus_tag="PF788_000796"
     CDS             complement(7074..7508)
                     /locus_tag="PF788_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDG6303070.1"
                     /translation="MDRTKQSLNVFVGMNRALDTLEQITKEDVKRYGLNITEFAVLEL
                     LYNKGPQPIQRIRDRVLIASSSISYVVSQLEDKGWITREKDKDDKRVYMACLTEKGQS
                     QMADIFPKHAETLTKAFDVLTKDELTILQQAFKKLSAQSTEV"
     gene            7735..8019
                     /locus_tag="PF788_000797"
     CDS             7735..8019
                     /locus_tag="PF788_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDG6303071.1"
                     /translation="MSNLEIKQGENKFYIGDDENNALAEITYRFVDNNEINIDHTGVS
                     DELGGQGVGKKLLKAVVEHARENNLKIIASCSFAKHMLEKEDSYQDVYLG"
     gene            8190..8996
                     /locus_tag="PF788_000798"
     CDS             8190..8996
                     /locus_tag="PF788_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDG6303072.1"
                     /translation="MAFHDKTATQVTNIVLNVRDLDLMTTFYKNILGLSVKSSDDNTT
                     VLSVGTGGHTLTLHLLEDGRQTSPREAGLFHIAFLLPTTEDLANFLYFVAQKNMGIGA
                     GDHLVSEALYFNDPEGNGIEVYRDRPSSSWEWQNGKVKMDTLEVDSQTLLTHRTDEGW
                     QGMPAKGMIGHLHLKTHDLDAAYQCYIEQLGFQHVSDFPRALFMSTNHYHHHIAANTW
                     QSNQARQNNSQSYGLTHVDIYQPDASTHTFTAPEGFDITVHSNTDLVPEK"
     gene            complement(9116..9787)
                     /locus_tag="PF788_000799"
     CDS             complement(9116..9787)
                     /locus_tag="PF788_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDG6303073.1"
                     /translation="MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPS
                     SLGLEPWKFVVIQDQALRDELKAHSWGAAKQLDTASHFVLIFARKNVTSRSPYVQHML
                     RDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGI
                     DSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQEPPKNKTRQAYEDVIEW
                     VGPKE"
     gene            10057..11049
                     /locus_tag="PF788_000800"
     CDS             10057..11049
                     /locus_tag="PF788_000800"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000161541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDG6303074.1"
                     /translation="MTKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSATVDQLK
                     DYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYS
                     PETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAA
                     TAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDK
                     AMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKD
                     IDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN"
     gene            complement(11298..12098)
                     /locus_tag="PF788_000801"
     CDS             complement(11298..12098)
                     /locus_tag="PF788_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDG6303075.1"
                     /translation="MVKAIAVDMDGTFLDSKKTYDKLRFEAIFTELRNRDITFIAASG
                     NQYAKLKSIFGDRDMYFISENGAVIYNGNELYNYKSFNRQVFQQVVDYLNMKQSIDQL
                     VICGLKSAYILKHTSEAFKEDTRFYYHQLKEIDSLQQLPEDDYVKIAFNINRETHPNV
                     DEEVATQFSNDIKLVSSGNDSIDIIMPNMTKGQALKRLLDKWEMSPSELMAFGDANND
                     KDMLAFAKHSYVMENSHDEELFNIASAVAPSNDKQGVLTIIEQEVLKK"
     gene            12419..13054
                     /locus_tag="PF788_000802"
     CDS             12419..13054
                     /locus_tag="PF788_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDG6303076.1"
                     /translation="MKLNNYSLKVKNKQLVDNCDLNFYLGQINHIVGKNGVGKSLLAK
                     DFLLNNSGNIPKSISQNVTLISSSSNIPNDITKDFLLSLLKSKFENNRQTFDKIYNIL
                     NIEAIPSNVLLKNLSDGQKQKLKLLSFLLEDHDLIILDEVTNALDKKTVNEIYEFLND
                     FIQSHQTKTIINITHNLSDLSALPGKYFIFKDLQIEEYQSKEEVINDYINL"
     gene            13060..13791
                     /locus_tag="PF788_000803"
     CDS             13060..13791
                     /locus_tag="PF788_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease"
                     /protein_id="HDG6303077.1"
                     /translation="MSTLKLEFKKSISNKIIYTLVVLFTFLFLLGYFLPIGIDKVKSL
                     SYSQFFFSSYTVATQLGFLLFSFVIAYFINKEYSNKNILFYKLIGDNIFTFFYKKVAV
                     LFFECLVFIILSITIISIIYSDFSHYLLLIILFSLVILQYILVVGTISMVSPNILISL
                     GISIVYWIGSVILVAINKNIFGIVAPFEASNTMYRAVEKILNNESTFMCPTEIINIVS
                     FFVLLFIVNTIVLLLSRKRWLKIGM"
     gene            complement(13951..14571)
                     /gene="srtA"
                     /locus_tag="PF788_000804"
     CDS             complement(13951..14571)
                     /gene="srtA"
                     /locus_tag="PF788_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A sortase SrtA"
                     /protein_id="HDG6303078.1"
                     /translation="MKKWTNRLMTIAGVVLILVAAYLFAKPHIDNYLHDKDKDEKIEQ
                     YDKNVKEQASKDKKQQAKPQIPKDKSKVAGYIEIPDADIKEPVYPGPATPEQLNRGVS
                     FAEENESLDDQNISIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVGNETRKYKMTSIRD
                     VKPTDVGVLDEQKGKDKQLTLITCDDYNEKTGVWEKRKIFVATEVK"
     gene            14765..15256
                     /locus_tag="PF788_000805"
     CDS             14765..15256
                     /locus_tag="PF788_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDG6303079.1"
                     /translation="MIRYAKKEDLNAILAIYNDAIINTTAVYTYEPQTIDERVAWFET
                     KQRKHEPIFVFEENGSVLGFATFGSFRPWPAYLYTIEHSIYVDASARGKGIASQLLHH
                     LIVEAKAKGYRALVAGIDASNKASIQLHQKFAFKHAGTLTNVGFKFNRWLDLAFYELD
                     LQD"
     gene            complement(15694..15864)
                     /locus_tag="PF788_000806"
     CDS             complement(15694..15864)
                     /locus_tag="PF788_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303080.1"
                     /translation="MLRLSIIFIAFIINTTITYGYTTEGTWVNLLFKSLSLSMIIVFM
                     FYYIRFVIEKKR"
     gene            complement(15926..16024)
                     /locus_tag="PF788_000807"
     CDS             complement(15926..16024)
                     /locus_tag="PF788_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303081.1"
                     /translation="MIKKKHLSGSLVPDRCFLIISEEVERFMENAY"
     gene            complement(16043..16942)
                     /gene="sdaAA"
                     /locus_tag="PF788_000808"
     CDS             complement(16043..16942)
                     /gene="sdaAA"
                     /locus_tag="PF788_000808"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HDG6303082.1"
                     /translation="MFDSIRETIDYAVENNMSFADIMVKEEMELSGKSRDEVRAQMKQ
                     NLDVMRDAVIKGTTGDGVESVTGYTGHDAAKLRDYNETHHALSGYEMIDAVKGAIATN
                     EVNAAMGIICATPTAGSSGTIPGALFKLEKTHDLTEEQMIDFLFTSALFGRVVANNAS
                     VAGATGGCQAEVGSASAMAAAAAVAIFGGSPEASGHAMALAISNLLGLVCDPVAGLVE
                     IPCVMRNAIGSGNALISADLALAGIESRIPVDEVIEAMDKVGRNLPASLRETGLGGLA
                     GTPTGEAIKRKIFGTAEDMVKNN"
     gene            complement(16956..17636)
                     /gene="sdaAB"
                     /locus_tag="PF788_000809"
     CDS             complement(16956..17636)
                     /gene="sdaAB"
                     /locus_tag="PF788_000809"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HDG6303083.1"
                     /translation="MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIP
                     KNIEIHYYESFAQTHQGHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEE
                     GDSIGQHPNCAYIKSSRNDGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVV
                     DGNMTKAQVNHFINDINDMKLDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYS
                     DVNVSYIN"
     gene            complement(17639..18682)
                     /locus_tag="PF788_000810"
     CDS             complement(17639..18682)
                     /locus_tag="PF788_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HDG6303084.1"
                     /translation="MDILLGVGTLVLVLVIMTLFLKYAPYGKQGLQALSGAACATFLP
                     QAFLSYAIGGVFDIKFLQDIGDLAGSLSGIAVGILTCLNLGVAPVFAVIVGLVLHDFK
                     LLPAFIAAYGVAFLIKWIEKKVPEGLDLIVVILFAPAIAFGLASIITPGVLATLKQIG
                     SAVTAVGDNNPYALAVILGLVIPVTGMTPLSSMVLTSLLGLTGVPMAIGALTCTGSSF
                     VNLILFRKLNIGGPSKAFAVCIEPLTQIDLIAQYPVQLYGTNALIGVVNACIVTFSGL
                     VIGVKGMATPIAGAIVLFGFNNAVTSIVTIATVIIVSIVLAYIIGTLINKFNLMNINF
                     KMPSKKNHIKESV"
     gene            19233..19436
                     /locus_tag="PF788_000811"
     CDS             19233..19436
                     /locus_tag="PF788_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303085.1"
                     /translation="MQLSHSVKVAISIYLALIFITFTSYLVIILYTSMTGHDVSHFVL
                     DSQHSHHGSLTQKHLSLPEISFK"
     gene            19619..20554
                     /locus_tag="PF788_000812"
     CDS             19619..20554
                     /locus_tag="PF788_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDG6303086.1"
                     /translation="MRYLANNHSALRLKGIILAIVGACLWGLGGTVSDFLFKYKNINV
                     DWYVTARLVVSGVFLLIMYKMMQPKRSIFSVFQDRRMLGKLLIFSILGMLVVQYAYMA
                     SINTGNAAIATLLQYIAPVYIIIWFVIRGVAKLTLFDVLAIIMTLLGTFLLLTNGSFS
                     NLVVNPASLFWGILAGVALAFYTIYPSDLLNRFGSILIVGWAMLISGVAMNLRHPIWH
                     IDITKWDISIILFLIFGIIGGTALAFYFFIDSLQYISAKETTLFGTVEPVVAVIASSL
                     WLHVAFKPFQIVGIILIMILILLLSLKRQPETLDE"
     gene            complement(20636..21604)
                     /locus_tag="PF788_000813"
     CDS             complement(20636..21604)
                     /locus_tag="PF788_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6303087.1"
                     /translation="MRKKWSTLAFGFLVAAYAHIRIKEKRSVKSYMLEQGIRLSRAKR
                     RFMYKEEAMKALEKMAPQTAGEYEGTNYQFKMPVKVDKHFGSTVYTVNDKQDKHQRVV
                     LYAHGGAWFQDPLKIHFEFIDELAETLNAKVIMPVYPKIPHQDYQATYVLFEKLYHDL
                     LNQVADSKQIVVMGDSAGGQIALSFAQLLKEKHIVQPGHIVLISPVLDATMQHPEIPD
                     YLKKDPMVGVDGSVFLAEQWAGDTPLDNYKVSPINGDLDGLGRITLTVGTKEVLYPDA
                     LNLSQLLSAKGIEHDFIPGYYQFHIYPVFPIPERRRFLYQVKNIIN"
     gene            complement(21737..22081)
                     /locus_tag="PF788_000814"
     CDS             complement(21737..22081)
                     /locus_tag="PF788_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDG6303088.1"
                     /translation="MVKQLNSVEAFREFIHQYPLAVVHVMRDQCSVCHAVLPQIEDLM
                     QSYPNVPLAVINQSQVEAIAGELNIFTVPVDLIFMNGKEMHRQGRFIDMQRFEHHLKQ
                     MNDSVNNDVDEH"
     gene            complement(22123..22533)
                     /locus_tag="PF788_000815"
     CDS             complement(22123..22533)
                     /locus_tag="PF788_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDG6303089.1"
                     /translation="MTTEGLLVAEKEIEVNGYDIDAMGVVSNIVYIRWFEDLRTAFIN
                     QHMNYSTMINQGISPILMKTEAEYKVPVTIHDKPVGRIYLVKASKMKWVFQFEIVSAH
                     GVHCIGTQTGGFYRLSDKKITSVPQVFQDILATK"
     gene            complement(22913..24979)
                     /locus_tag="PF788_000816"
     CDS             complement(22913..24979)
                     /locus_tag="PF788_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIABC"
                     /protein_id="HDG6303090.1"
                     /translation="MFKKLFGQLQRIGKALMLPVAILPAAGILLAFGNAMHNEQLVEI
                     APWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLIMN
                     ATMGKVLHITIDDIFSYAKGAKELSQAAKEPAHALVLGIPTLQTGVFGGIIMGALAAW
                     CYNKFYNITLPPFLGFFAGKRFVPIVTSVVAIATGVLLSFAWPPIQDGLNSLSNFLLN
                     KNLTLTTFIFGIIERSLIPFGLHHIFYSPFWFEFGSYTNHAGELVRGDQRIWMAQLKD
                     GVPFTAGAFTTGKYPFMMFGLPAAAFAIYKNARPERKKVVGGLMLSAGLTAFLTGITE
                     PLEFSFLFVAPVLYGIHVLLAGTSFLVMHLLGVKIGMTFSGGFIDYILYGLLNWDRSH
                     ALLVIPVGIVYAIVYYFLFDFAIRKFKLKTPGREDEETEIRNSSVAKLPFDVLDAMGG
                     KENIKHLDACITRLRVEVVDKSKVDVAGIKALGASGVLEVGNNMQAIFGPKSDQIKHD
                     MAKIMSGEITKPSETTVTEEMSDEPVHVEALGTTDIYAPGIGQIIPLSEVPDQVFAGK
                     MMGDGVGFIPEKGEIVAPFDGTVKTIFPTKHAIGLESESGVEVLIHIGIDTVKLNGEG
                     FESLINVDEKVTQGQPLMKVNLAYLKAHAPSIVTPMIITNLENKELVIEDVQDADPGK
                     LIMTVK"
     gene            complement(25280..27019)
                     /locus_tag="PF788_000817"
     CDS             complement(25280..27019)
                     /locus_tag="PF788_000817"
                     /EC_number="1.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate oxidase"
                     /protein_id="HDG6303091.1"
                     /translation="MAKIKANEALVKALQAWDIDHLYGIPGDSIDAVVDSLRTVRDQF
                     KFYHVRHEEVASLAAAGYTKLTGKIGVALSIGGPGLIHLLNGMYDAKMDNVPQLILSG
                     QTNSTALGTKAFQETNLQKLCEDVAVYNHQIEKGDNVFEIVNEAIRTAYEQKGVAVVI
                     CPNDLLTEKIKDTTNKPVDTSRPTVVSPKYKDIKKAVKLINKSKKPVMLIGVGAKHAK
                     DELREFIEMAKIPVIHSLPAKTILPDDHPYSIGNLGKIGTKTSYQTMQEADLLIMVGT
                     NYPYVDYLPKKNIKAIQIDTNPKNIGHRFNINVGIVGDSKIALHQLTENIKHVAERPF
                     LNKTLERKAVWDKWMEQDKNNNSKPLRPERLMASINKFIKDDAVISADVGTATVWSTR
                     YLNLGVNNKFIISSWLGTMGCGLPGAIASKIAYPNRQAIAIAGDGAFQMVMQDFATAV
                     QYDLPLTVFVLNNKQLAFIKYEQQAAGELEYAVDFSDMDHAKFAEAAGGKGYTIKSAS
                     EVDAIVEEALAQDVPTIVDVYVDPNAAPLPGKIVNEEALGYGKWAFRSITEDKHLDLD
                     QIPPISVAAKRFL"
     gene            complement(27066..27755)
                     /locus_tag="PF788_000818"
     CDS             complement(27066..27755)
                     /locus_tag="PF788_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDG6303092.1"
                     /translation="MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGII
                     FVLLIFGISYNGYMKGGSWINHILNATVVCLAYPLYKNREKIKDNVSIIFASVLTGVM
                     LNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIEVSHELGGTDTMTVLFIITTGLIG
                     SILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISS
                     VLIPVLILLFY"
     gene            complement(27748..28143)
                     /gene="cidA"
                     /locus_tag="PF788_000819"
     CDS             complement(27748..28143)
                     /gene="cidA"
                     /locus_tag="PF788_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin-like murein hydrolase modulator CidA"
                     /protein_id="HDG6303093.1"
                     /translation="MHKVQLIIKLLLQLGIIIVITYIGTEIQKIFHLPLAGSIVGLFL
                     FYLLLQFKIVPLTWVEDGANFLLKTMVFFFIPSVVGIMDVASEITLNYILFFAVIIIG
                     TCIVALSSGYIAEKMSVKHKHRKGVDAYE"
     gene            complement(28356..29234)
                     /locus_tag="PF788_000820"
     CDS             complement(28356..29234)
                     /locus_tag="PF788_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000351767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDG6303094.1"
                     /translation="MDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMG
                     TPLFDRSKRHLILTDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMN
                     MKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTL
                     DKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTV
                     AQISQWHVIEDLVTNELGISILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQL
                     SHATTKWIEFLKDRLG"
     gene            29401..29619
                     /locus_tag="PF788_000821"
     CDS             29401..29619
                     /locus_tag="PF788_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterile alpha motif-like domain-containing
                     protein"
                     /protein_id="HDG6303095.1"
                     /translation="MSFYEFMQSFLGDDTPLGELVDWINQDSNFPREVKSHSEILSYF
                     RTNPCPESISVPVIKRALSVFNQFTNVQ"
     gene            30008..30439
                     /locus_tag="PF788_000822"
     CDS             30008..30439
                     /locus_tag="PF788_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDG6303096.1"
                     /translation="MEYKKILIRLLIAFAVLFSADFTYQSVEQTHQSHAAVNYYSKNQ
                     CTWWAFKRRAQVGKPVSNRWGNAKNWYYNARKSKYATGRTPRKFAVMQSTAGYYGHVA
                     VVEQVYKNGSIKVSEYNFYRPLKYNTRVLSKKAARNFNYIY"
BASE COUNT         9728 a         5569 c         4613 g        10559 t
ORIGIN      
        1 aacacttgct atgtgataaa attaatttta tatataaaat cttaagattc agattattta
       61 atagcaaagg agatagtgat atggatgttt taacaataga acatttaaca aagaagatag
      121 gcaacaaaac gattctcgaa gatgtatcat ttaagctgaa acgcggacaa atagttggtc
      181 tcgttggagc gaatggtgca ggtaaaacaa ctttaatgaa agttatatta ggttactcta
      241 gtttccaaag cgggaatttt aatgttatta acagcaagga cagcaaaagc aatatcggcg
      301 cattgattga aaatccagga atatatcctt ttatgtctgg atatgaaaac ttgaagttat
      361 tgaatgaatc aaaaaacact caagatatcg ataaaattgt ctcacaactt catatggatg
      421 aatacattca taaaaaagct aaaacgtatt ctcttggtat gaaacaaaaa ttaggaattg
      481 ctatagcatt tttaaataaa cctcaattca ttatcttaga tgaaccaatg aatggcttag
      541 atccaaaagc tgtgcgagat gtacgtgaat tgattgtcca aaaagcgcaa gaaggtgtta
      601 ctttcttaat ttcgagtcat attttaagtg aattagttaa aatcacaaac tctatcctta
      661 ttattaacaa aggtaaaatt gttacagaaa catcggaaga agaacttaaa caatttaaag
      721 ataatgattt agaaaatgta ttactagaaa tcatagaaag ggaggaccaa gcataaaatg
      781 ggaactttaa ttaaacaaga atgtttcaaa ttatttaaaa agaaatcaac ttttatcgca
      841 cctattgtct ttattctact aatggttgct caaggttata ttgctacaaa atacaatgaa
      901 atttttacgc cacaggaatc tttcacatct gcttataatg gtttttcatg gtttgcattt
      961 ttattaatta ttcaagcaag tacaatcatt tcaatggaat ttcattacgg tacgattaaa
     1021 aatttactct atcgtgaata ttcaagaaca actatgattg ttagcaaaat catcacatta
     1081 tttattattt ctttaattta ttttgttatt acaattattg cttcaattgt tattgggtct
     1141 ttattcttta atgatttaaa tatatttgaa agtagcggta atcaattatc tttattgaat
     1201 caattattat tagttagttt aggcacattt gttggcgttt ggttagtttt aagcttaacg
     1261 ttgctattat catctgcaac aaattcaacg ggagtagcca ttgctgtagg tattgttttt
     1321 tattttgcaa gttctatttt agcagttatt caaacggcac ttttagaaaa aatagactgg
     1381 ctaaagtgga atcctattaa tatgatgaat attatgcttc aaacagttga aaaaggcttt
     1441 agtaagtcga caaaattaga acttcatgaa ttgtttattg gtaatattgc ttatatttct
     1501 attttcttaa tacttgtagt atttattttc aagaagaaaa atatttagta acttaaagta
     1561 ttaaatgtct aaatacacac atattccatc gtaattcaaa atcattttca aatcccttca
     1621 cccaaataat ggtgcgggga ttttttcatc caaattttgg aaattccaca ttttacatat
     1681 cgtaattttt taggaaacta gtgaatataa caaatccctc ctctcatttt taaaatagat
     1741 atatcacttc cccactttta cttaactaaa ctgcaacggt tcctaatacc aaaatcctgc
     1801 cctctatttt tatcaattca agcatactta ttgaaaaatg ttaacgtttt cttgataatc
     1861 attgtaagcg catttatttt ataaactaac gtttgaaata tactacagga gtgacacgta
     1921 atgactcaaa ttactgaaaa agaattaaaa aagaagtatt tagatttact atcccaaaat
     1981 tttgatactc cagaaaaact tgcaactgaa attatcaatt tagaatcaat tttagaatta
     2041 cctaaaggta cggaacattt cgtcagcgat ttacatggtg aatatgaagc tttccaacac
     2101 gtattacgca acggttctgg gaacgtgcga gcgaaaatca atgatatttt caaagagaga
     2161 ctttcaacta aggagcttaa tgacttaact gctcttgtct actatccaga agacaaatta
     2221 aaattgatta aaagtgattt ccaaaattgc ggtcaactta atgtctggta tatcacaaca
     2281 atcgaacatt taattgagtt aattaaatat tgttcttcaa aatatacgcg ttcaaaactg
     2341 cgtaaagcat tgccaaaaca atacgtttat attattgagg aactactgta taaaagtaat
     2401 gaatatcaaa ataaaaaatc atattacgaa acacttgtta accaagtaat tgaacttaaa
     2461 caggcagatg atttaattat tggactcgct tattccgtac aacgcttagt cgtcgatcat
     2521 ttacacgttg tcggtgatat ttatgatcgt ggaccacaac cagataaaat tatggataca
     2581 ctgattaatt atcattccct agatattcaa tggggtaatc atgatgtgct ttgggttgga
     2641 gcctatgctg ggtcaaaagt atgcttagca aacttacttc gaatttgtgc acgttatgat
     2701 aatttagata ttatcgaaga cgcttatggc attaatttaa gaccactgct tactttagct
     2761 gaaaaatact atgacgcaga taatcctgct tttaagccta aaaaaagacc tgacaaacac
     2821 gaacgtttaa ctcaacgtga agaaagtcaa attactaaaa ttcatcaagc tattgcgatg
     2881 attcaattca agttagaaat accaattatt aaacgtcgtc caaatttcga aatggaagaa
     2941 cgtcttgtgc ttgaaaaggt taattatgat acaaatgaaa ttacagttta tggtaataca
     3001 tacccattga aagacacatg tttccaaact gtcaatcgtg ataatccagc agaattacta
     3061 cctgaagaag aagaagtcat gaataaacta ttattgtcat tccaacaatc tgaaaaatta
     3121 cgtcgtcata tgtctttctt gatgcgtaaa ggctctcttt acttaccata taatggcaat
     3181 ttactcattc atggttgtat tccagttgat gaaaatggtg agatggaatc atttgaaatt
     3241 gatggtcata cttacagcgg ccaagaatta ttagatgtgt ttgagtatca tgtccgtaaa
     3301 tcatttgatg aaaaagaaaa tactgatgac ttatcgacgg atttagtttg gtatttatgg
     3361 actgggaaat attcgtcact atttggtaaa cgtgccatga ctacgtttga gcgatacttt
     3421 attgcagata aagcttctca taaagaagaa aagaatccgt actatcatct tcgtgaagat
     3481 gtgaatatgg ttcgtaaaat gctcagtgat ttcggattaa atccagatga aggacgcatt
     3541 attaatggtc acacaccagt gaaagaaatc aatggcgaag atcctatcaa ggctgatgga
     3601 aagatgcttg tcattgatgg tggcttttca aaagcttatc agtcaacaac tggcattgca
     3661 ggctatacac tattgtataa ttcattcggt atgcaactcg ttgcacacca acaatttaac
     3721 gctaaagaaa aaatactttc cgaaggtatc gatgaacttt ctataaagcg cgtcgtagat
     3781 aaagaattac aacgtaagaa gattcgtgat accaatattg gtaaagatct tcaagctcaa
     3841 atagatattt tgaaaatgtt aatgcatgat cgttacttag actaaagacg acatttgatg
     3901 catgtatcgt gcacttattt agtggtactg tgtttacgca ttggctacgc aaacacgatg
     3961 ataaataggc gacctagcta caccgaaaaa aatcccctca ctattgcgag tagtgagggg
     4021 attggtgtat ctatgctaat tcctgttaac tgtattataa caactttaca gcaaaaaaat
     4081 gcaaaatcaa ctaataaatt aatgaaatga ccgacaccct cgcttctact ccaatttaac
     4141 aaaatactat attagtacta tatttttcat taacatgtat gttacatttt ctatattact
     4201 taaaattacg aagggacatt tttaaatcat gcgtatctta aaagagtcca ttattgtggc
     4261 atttgccttt gttggtgttg tcgttggtgc cggctttgct actggtcaag aaattttcca
     4321 gtttttcaca agtcatggcg catatagcat ttcaggcatt attgtaacag gactattgat
     4381 tactttaggt ggaatggttg tcatgcatac aggtcatcat ctaaagtcca gaaatcattc
     4441 tgattcaatt aactatttct tatacccctc tattgcaaga ggttttgata ttattttaac
     4501 aatgtttatg ttgtctttag ctattattat gactgcaggt ggtgcgtcaa ccattcatca
     4561 aagtttcaac ttaccgtatt ggctgagcgc actcatatta gtcgccttta ttttagcaac
     4621 actgtttcta aaattcgatc gtttaattgc tgtgcttggc ggtgttaccc catttttaat
     4681 tgcgattgtc attatgattg cggtctacta tttcacaaca agtcatcttg attttactgc
     4741 cgctaataat gatgctcaga ttcataagca gaaatcatta tcacctggat ggtggtttga
     4801 tgcgattaac tatgcaagct tgcaaattgc tgctgccttc agcttcttat cagtgatggg
     4861 tagtaaagtt aaatatcgtg actcaacgtt atacgggggc ttgattggcg gtttaatcat
     4921 tacattttta ctcatgatga ttaatctagg tttaatttct caattcgata aaattaaaca
     4981 cgtagatcta cctacattaa aattagcgac acaaatgtct ccgtcaattg gtattattat
     5041 gtctgtcatt atgatacttg tcatctacaa tactgttgtt ggattaatgt atgcatttgc
     5101 gtcacgtttc agcgttccat tcagcagacg ttacttcatc attattatta caatggctgt
     5161 catcacttat attagtacat ttatcggttt catttcatta attggaaaag tattccctat
     5221 tatgggattg ttcggtttca tcttactcat acctgtactc tataaaggtt taattaagcg
     5281 tattaccggc aaatctcata tcgattaaaa tatctatact attgtaaaat ttagtacagc
     5341 acttcaaaat caaaaaagcg ggcagatgaa aagtaaaaat cttttccatc tgtccgcttc
     5401 ttaatagaac tgttatttcc caagtatttg ttgaccagcc gttaatccag tttctgtaat
     5461 ttcatggccc ttcacccaaa cttcttcgac ttgtgcccca cgtgtattaa acaagttaat
     5521 gacttgttca cttgcagcta atggcacaat tggatcatgt ttccccatag aaagcaacac
     5581 actgacatct gataaatcct ttgttgacgt tacttcaact gggtataacg gtgcatataa
     5641 caatgctttt ttaaatggtg cttctgaacg caacattaag ttaatcgcta tatttgatcc
     5701 atttgaaaat ccaacaagta ctgctttttc aatatcaaaa tcataacgtt cagcagcttc
     5761 tttaatgaac gtcaacaatt cttgtccacg aaatgccaaa tcttcttcat cataaacacc
     5821 ttcaccaaga cgtttgaaat aacggttcat cccattttct gaaacttgtc ctctaatact
     5881 taacaagtga taattttcat tcaatgcttc gcctaacggt aataaatcga actcatcacc
     5941 acctgtacca tgcaataata ttagtgttgg cgcaccattt tgtccttctc taaaaatatg
     6001 ttccatcaca aatcctcctc attccaatta accatgttga cgcttcgtat taaaaggtct
     6061 aacttccgat tcaatatatt ctcttttatt ttctaaaaat ggtggtaagg ataacccttc
     6121 gcctaatgtt tcataaggtt catcttccat aaatcctggt ccatctgttg aaatttctat
     6181 taaaatatgc cccacacgtg catataatgc ttcaaaatag aaacgattaa cgatgcctga
     6241 gttattaata cctacctctt tatatttcgt tgcccacgct tctattgcat catgatcttt
     6301 cacacgaaat gacacatgat gtacctcacc ataaccttga cgtgctgctg gccctttatc
     6361 atcttttatt aagattacct ggccaccatt gcctccttcg ccaacttcaa gtaatgcgac
     6421 attatcttca tgcgcaatag ttgtcatacc gtaaacagtc tctaaaatat ttttaaagtc
     6481 gtcaaaataa cttactttaa tttcaatggg gcctaatcca taaatcgctt tatctactgg
     6541 aaccggtcca ttcttccaag gtacaccagg tgctacccct tcatttaact catctgaaat
     6601 taattgatac acttggccat cgacttcttc aaatggcaac acttttttac caaataattc
     6661 ttgaatacct tcgtgtttaa caccaaactc atcaaagcgc tgttcataat atgttaatgc
     6721 gtcatcgtta ggcactctaa aagacggtct tgtaatggta tttgttcctg cctgcccttt
     6781 tgtaatattt ggaaaatcaa agaacgtcat gtctgtacct gccgaaccta catcatctgc
     6841 aaaaaaagta tgatacgtat aaatatcatc ttgattgact gtctttttaa ctaaacgcat
     6901 gcctagtact tctgtaaaaa atttataatt acgttctgca tcatctgtca ttgcagtaac
     6961 atggtgaata cctagtaatt catgattatt tatcatttta tataccctct ttatattttt
     7021 agtgcattta tctcgaaatc gagatacttt aatgtaaatt tttagtgcac gccttacact
     7081 tctgtagatt gtgcacttag tttcttaaac gcttgttgta agattgttaa ttcatccttt
     7141 gttaacacat caaacgcttt tgttaatgtc tcagcatgct tagggaaaat atctgccatt
     7201 tgactttgac ctttttcagt taaacaagcc atatatacac gtttatcatc tttatccttt
     7261 tcacgtgtaa tccaaccttt gtcctctaat tgacttacaa catatgaaat gctgctactt
     7321 gcaattaata cgcggtctct aatacgttga attggttgcg gacctttatt ataaagcaac
     7381 tcgagcactg caaattcagt aatatttaag ccatatcgct ttacgtcttc ttttgtaatt
     7441 tgctctaatg tgtctaacgc cctattcatt ccgacaaaaa cattgagaga ttgtttcgtt
     7501 cgatccatat gatcaccaac ttttttattt tatttcgatt tcgagataaa ttatatagct
     7561 gaatagattt aatgtcaaga tacgtgtttt catcttcatt tcaaactgtg cttaataaaa
     7621 acgactacat agatgtggca atgtcgtcac atgactgtca tgcacctttg acttcgttta
     7681 agttaaaata gaatagggaa atactataat caatcatgat aggagttgat atgtatgagt
     7741 aaccttgaaa tcaaacaagg cgagaacaaa ttctatattg gtgatgatga aaataatgct
     7801 ttagctgaaa tcacataccg ttttgtggat aataatgaaa ttaacattga tcatacaggc
     7861 gtatctgatg aacttggtgg tcaaggtgtt ggcaaaaaac tacttaaagc agttgttgaa
     7921 cacgctcgag aaaataattt gaaaattatt gcctcatgtt catttgccaa acatatgtta
     7981 gaaaaagaag attcatatca agatgtatat cttggttaaa taaattttgc gatggtgcaa
     8041 ctgtaccatc gcttttttgt tcgcatcaat ataaaattgc aaaacgacta gttattttgc
     8101 atttcaaact ttatgctatc aattcatttt cttttctggt atacttttta tactaactta
     8161 tagaaaaata gaaaaagagg cgatgcataa tggcatttca cgataaaaca gcaacacaag
     8221 tgacaaacat tgtactgaac gtaagagact tagacttaat gacaacattt tacaaaaaca
     8281 ttttaggact atccgttaaa agttctgacg ataatacaac cgtattatct gttgggactg
     8341 gtggccatac tctaacgtta catttattag aagacggccg tcagacttcc ccacgtgaag
     8401 cagggctttt tcatatagca tttttattac caactactga ggatctagct aacttcttat
     8461 atttcgtggc acaaaaaaat atgggcatcg gcgctggtga tcatttagta agtgaagctt
     8521 tatatttcaa cgaccccgaa ggtaatggta ttgaagtcta tcgcgataga ccttcatctt
     8581 catgggaatg gcaaaatggc aaagttaaaa tggatacttt agaagttgat agccaaacct
     8641 tattaacaca tcgtactgat gaaggttggc aaggaatgcc agcaaaaggc atgattggac
     8701 acttacattt aaaaacacat gatttagacg cagcatatca atgttacatt gaacaattag
     8761 gattccaaca tgtgtctgat tttccacgtg cgctatttat gtcaacgaat cattatcacc
     8821 atcatattgc tgctaatact tggcaatcca atcaagcaag acaaaacaat tcacaaagtt
     8881 atggattaac acatgttgat atttatcaac ccgacgcctc aacacataca tttacggcac
     8941 cagaagggtt tgacatcaca gttcattcaa atactgacct tgttccagaa aaataatcat
     9001 ccatacttta ttaatacaat tttttcacgc aaaagcctgc gattcattta tgtaatcgca
     9061 ggctttttta ttgctaactt tttaatttta tatatttaga catacggtat tctatttatt
     9121 cttttggtcc aacccattca ataacatctt cataagcttg gcgtgtttta tttttcggtg
     9181 gctcttgttg tctgtagcca aatgcgacca tcactgataa accaaattgc tcagtatcta
     9241 agatcccttt atttgctaaa atgtctgtca ctgtatccag actaaaacct tccatcggac
     9301 atgaatcaat acctaacaat gcggctgtcg tcatcatatt gcctaatgca atatacgttt
     9361 gtttacttga ccagtcatac aaggcttgat cattatcaga aatatggaaa tctgcttgga
     9421 atgcatcgaa tttttgttca acagctggaa tcgtttgtgc ctcatatttt ttaatatctc
     9481 ttaacatatg ttgtacatac ggtgatcttg acgttacatt tttacgcgca aaaattagca
     9541 caaaatggct cgctgtatct aattgttttg ctgcgcccca actgtgcgct tttaattcat
     9601 cacgtaacgc ttgatcttga atcacgacaa acttccaagg ttctaaccca agagaacttg
     9661 gagacaatct acctgactct aatattgttt caaaatcttc tttcgaaact ttcttttgtg
     9721 gatcgaattg cttagtcgca tgtctgaaat gaaatgcatc cataattgtt tgattcatat
     9781 tgctcattga acatagcctc ccatttttat atttattgct atacaaatta tacttcatgt
     9841 tttaaaaaga ctaaagtaat ccgtttgcaa ttcactataa cttgtgcaca tgttataagt
     9901 tttctgcaat aaaacacact tttgaatttt gggaaattta gtgttataat atatttgtga
     9961 tatttttcac aattaaattg tggcgtgatt ttaatgtgca taatctttaa tttcactcat
    10021 ttacttttca atcttttaaa agcgaggttt ttaataatga caaaaattat gttctttggt
    10081 acgcgtgatt atgagaaaga gatggcatta aattggggga aaaagaataa tgtcgaagta
    10141 actacttcta aagagctatt atcaagtgct acagtcgatc aattaaaaga ttacgatggc
    10201 gtaactacaa tgcaatttgg taagttagaa aatgacgttt atcctaaatt agaatcttac
    10261 ggtattaaac aaattgcaca acgtactgct ggatttgata tgtatgattt agatttagct
    10321 aaaaaacaca atattgtgat atctaacgtt cctagttatt cacctgaaac aattgcagag
    10381 tattctgttt ctatcgccct acaattagtg cgtcgcttcc cagatattga acgccgtgta
    10441 caagcacatg attttacttg gcaagcagaa atcatgtcta aaccagttaa aaatatgact
    10501 gttgcaatta ttggtacggg tcgtatcggt gctgctacag ctaaaatata tgcaggattt
    10561 ggtgctacaa ttacagctta tgacgcctat cctaataaag atttagactt tttaacttat
    10621 aaagatagtg ttaaagaagc tattaaagat gccgatatta tttctttaca tgttccagcg
    10681 aacaaagaaa gctatcattt attcgataaa gcaatgtttg atcatgtgaa aaaaggtgca
    10741 atcttagtta acgcagcacg tggtgcagtc atcaatacac ctgatttaat cgctgcagtg
    10801 aacgatggta ctttgttagg tgctgcgatt gatacttatg aaaatgaagc agcatacttc
    10861 acaaatgact ggactaataa agacattgac gataaaacat tattagagtt aatcgaacat
    10921 gaaagaattt tagtaacacc acatattgct ttcttctctg atgaagcagt acaaaacctt
    10981 gttgaaggtg gtttaaacgc agcattatct gtcattaaca ctggtacatg tgaaacacgt
    11041 ttaaattaat atatatattt aaaagcaaag gcgcgccatg tgcctttgct ttttattttg
    11101 tatatctgta tcaaaatcga tttgattaaa atccgcttta ttttatcatc tattcaaatg
    11161 attttagtgc gcttatttta ctatggcatt attgcctaac ctgtttgaga tatattaata
    11221 tttgatgatt cgtattcaaa gttttcattt aacatgtatt tagtatcatg atagctgctt
    11281 cattgatgat atactaccta ctttttcaac acttcttgtt cgataatcgt taatacaccc
    11341 tgcttatcat tacttggagc gacagcagag gcaatattga acaattcttc atcatgacta
    11401 ttttccatca cataactatg cttagcgaac gctaacatat ctttatcatt attcgcatct
    11461 ccgaaggcca tgagctctga aggagacatt tcccatttat ctaacaatcg ttttaatgcc
    11521 tgccctttag tcatgtttgg cataataata tcaatgctat cgttcccact tgagacaagt
    11581 ttaatatcat tgctgaattg cgttgctact tcttcgtcaa cattcggatg cgtctcacga
    11641 ttaatattaa atgctatttt gacataatca tcctcaggta attgctgtag actgtcaatt
    11701 tcttttaact gatgataata aaatctcgta tcttctttaa acgcttcaga agtatgtttt
    11761 aaaatatacg cgcttttcaa accacagatg acgagttgat caatactttg cttcatattt
    11821 aagtaatcga caacctgttg aaacacctga cgattaaagc ttttataatt atataactca
    11881 ttgccattat aaataactgc accattttca gaaataaaat acatatctct atccccgaaa
    11941 atagacttca acttcgcata ttgattgcca ctcgcagcaa taaatgtaat atctctattt
    12001 ctaagttcag taaaaatcgc ttcaaatcta agtttatcat atgtcttttt tgaatctaaa
    12061 aacgtcccgt ccatatctac cgcaatagcc ttaaccatga ttatcctcct cattgctctt
    12121 ttagtcgtct tcattatatc catctcatga caagcaatga agtttgtcat accacaatga
    12181 acctatattc acattttgaa attgctttca tatatgcaaa acacattaca ctggatatag
    12241 cattcagagg cgaacataaa tttcagaata ttgtaaaaat atcacactat atttatcatt
    12301 tagacaaaat atagtgtgat atactaattt ataacatcta tacataatgt gaaagaattt
    12361 ttaaaaatac aattaaatat cggtgtaata aatcccttta tacataggag ttgtatacat
    12421 gaaactaaat aactattctt taaaagttaa aaacaaacaa ctagttgaca attgtgattt
    12481 aaatttctat cttggtcaga tcaatcacat tgttggtaaa aatggtgtag gaaaatcttt
    12541 attagctaaa gatttcttac taaataatag tggaaatatc cctaagtcca tttctcaaaa
    12601 tgtaacctta atatcaagtt catcaaatat tcctaatgat ataacaaaag attttttatt
    12661 atcattgtta aaatcaaaat ttgaaaacaa tcgacaaaca ttcgataaga tttataacat
    12721 actaaacatc gaagcaatac cgtctaacgt actactaaaa aacttgagtg atggtcaaaa
    12781 acaaaagctt aaattattaa gtttcttatt ggaagatcat gatttaatca tattagatga
    12841 agttacaaac gctttagaca agaaaacagt taatgaaatt tatgaatttt taaatgattt
    12901 tattcaaagc catcaaacta aaactattat caatattaca cataatttat ccgatttaag
    12961 tgctttgccg ggtaaatact ttatttttaa agaccttcaa atagaagagt accaatcaaa
    13021 agaagaagtc ataaatgatt acattaattt ataattgagg tgtccacttt gaaattagaa
    13081 tttaaaaaaa gtatttccaa taaaattatt tacacgcttg ttgtgctatt cacattcctt
    13141 ttcttacttg ggtatttttt accaataggt atagacaaag ttaaaagttt aagctatagc
    13201 cagtttttct tcagttcata tactgttgca acgcaattag ggttcttact attttcattt
    13261 gttattgcat attttattaa taaagagtat tcgaataaaa atatcctgtt ttataaattg
    13321 attggcgata atatctttac cttcttctat aaaaaggtag cagtgttatt ttttgaatgt
    13381 ttagtgttca taattctaag tatcactatt atttcaatta tatattcgga tttctcacat
    13441 tacttactat taataatctt attttcactc gttatcttac aatatatctt agttgttgga
    13501 acgattagta tggtttcacc taacatttta atcagcttag gtatcagcat tgtatattgg
    13561 attggttcag tcatcttagt tgccattaat aaaaatatat ttggtatcgt tgctccattt
    13621 gaggcgagca atacgatgta tcgtgccgta gaaaaaatat tgaataacga gtcaacattt
    13681 atgtgtccta ctgaaattat aaatatagta tcattcttcg ttcttctatt tatagttaat
    13741 actattgtct tattactaag tagaaagaga tggttgaaaa tcggtatgta gtataaaaaa
    13801 ggagcggtat acattgccgc ttctttttat tatgtatttt tacaatctcc accaatgaca
    13861 cgtcgtcatt gctacctcat accaaacaaa aaacagtctc gcaatcaaga ctgttttcca
    13921 ctcaatatat tcatccatta gcgtaataga ttatttgact tctgtagcta caaagatttt
    13981 acgtttttcc caaacgcctg tcttttcatt gtaatcatca caagtaatta atgttaattg
    14041 tttatcttta cctttttgtt catctagaac tcctacatct gtaggcttaa catctcttat
    14101 acttgtcatt ttatacttac gtgtttcatt accaacttta aagtacacca tactaccttt
    14161 tttggctgct ttaagatttg taaattgata gttcggacgg tcaatgaaag tgtgtcctgc
    14221 aattgaaata ttttgatcat ctagtgattc attttcttct gcaaagctta cacctctatt
    14281 taattgttca ggtgttgctg gtcctggata tactggttct ttaatatcag catctggaat
    14341 ttcaatatag cctgccactt tcgatttatc tttcggaatt tgaggtttag cttgctgctt
    14401 tttatcttta ctcgcctgtt cttttacatt tttatcatat tgttcaatct tttcatcttt
    14461 atctttatcg tgaagataat tatcgatatg tggtttagca aacaaatatg ctgccactag
    14521 gataagtacc acaccagcga ttgtcattaa tcgatttgtc cattttttca tacgttaagg
    14581 ctccttttat acatttcaca atgcctgtta acatttcata tagtatacca ttaatttcaa
    14641 aatgactcat agcaattcat tttatactat aaaatttaca tgtatacttt tacgttagat
    14701 ttcattacac atatttgcat tcaaataacg aaacgctttt aataattact aagggggaat
    14761 tgatatgatt agatacgcta aaaaagagga tttaaacgct atattagcga tatacaatga
    14821 tgccattatc aatactacag ctgtttatac ttatgaacca caaaccatag acgaacgtgt
    14881 cgcatggttt gaaacgaaac aacgtaagca tgagcctatc tttgtatttg aggaaaatgg
    14941 aagtgtctta gggtttgcga cgttcggttc atttagacct tggccagcat acctatatac
    15001 aatcgaacat tctatttatg tcgatgcttc agctagagga aaaggtattg ctagtcaatt
    15061 actacaccat ttaattgtgg aagcaaaagc taaaggttat cgtgcgctag ttgcaggcat
    15121 tgatgcttcc aacaaagcga gtattcagtt gcatcaaaag tttgctttta agcatgccgg
    15181 cacactgacc aatgtaggtt ttaaatttaa tagatggtta gatttagcat tttacgaatt
    15241 agatttacaa gactagtaat gtttgaatca cataatataa acaagacaac catgttaatt
    15301 cccttaacat aacaagccaa catataaaat tttaaacttc tcaggggagt gggacagaaa
    15361 tgataaagag ccactaatga tttattatgt agtggttctt acacattagc cacagctaat
    15421 gtgtacttaa aaataggaat acatgagtaa aactcatgca taagaaatac taatttctat
    15481 agaaaaagta tttctttatc gtcgtcccac cccaactcgc acattattgt aagctgactt
    15541 ttcgtcagct tctgtgttgg ggcccaaaaa gcttgttaca agcgcatttt cgttcagtca
    15601 actactgcca atataacttt gtagagcata ttacattgat ttacattgtc ccttttattt
    15661 attcttttca aatactatcc ccatagcttt gatttaacgc tttttctcaa taacaaaacg
    15721 aatatagtag aacatgaaaa cgataatcat gctgagcgat aaagatttaa ataatagatt
    15781 gacccacgtt ccctcagtcg tatatccata tgtaatcgtt gtgttaatga tgaatgctat
    15841 aaagatgatt gatagtctta gcatatcatc actcctttta agttatttta gatatacggg
    15901 ggcgcttttg caatcactat tttgattagt atgcattttc cataaatctt tcaacttctt
    15961 cagagataat taagaagcat ctatctggta ctaatgatcc agacagatgc ttctttttta
    16021 tcaatatttt attgttatct cattaattat ttttaaccat atcttcagct gtgccaaaga
    16081 ttttacgttt aattgcttcg ccagttggtg tgcctgctag tccacccaat ccagtttcac
    16141 gtaatgatgc aggaaggtta cgaccaacct tatccattgc ttcaataact tcatcaacag
    16201 ggattctact ttcaatacct gctaatgcta aatctgctga aattaaagcg ttacccgaac
    16261 caattgcatt tctcataaca caaggaattt caacaagtcc ggctactgga tcacaaacta
    16321 aacctaataa attacttatc gctaatgcca tagcgtgccc ggatgcttct ggtgatcctc
    16381 cgaatatagc tactgctgca gctgcggcca ttgcagatgc tgaaccaact tcagcttggc
    16441 agccacctgt tgcaccagct acacttgcat tgtttgctac gacacgccca aacaatgctg
    16501 aagtgaataa gaaatcaatc atttgctctt ctgttaaatc atgtgttttt tctaatttaa
    16561 aaagtgcacc gggaatggta cccgaggaac cagctgttgg cgttgcacaa ataataccca
    16621 tcgcagcatt gacttcattt gttgcaatgg cacctttgac tgcgtcaatc atttcatatc
    16681 cagacaaagc atgatgtgtt tcattataat cacgtagttt agcagcatca tgaccagtgt
    16741 agcccgttac actttcaacc ccatcacctg tcgtcccttt gattactgcg tctcgcatga
    16801 catctaaatt ttgtttcatt tgcgctcgca cttcatcacg tgatttaccg cttaattcca
    16861 tttcttcttt aaccatgata tccgcaaatg acatattatt ttctacggca taatctatag
    16921 tctctctaat tgaatcaaac atgtttattc cccctctaat ttatatagga aacgtttacg
    16981 tcactgtatt tctctttaat tgtatttaat gttgattctg agattgcttt atttaatggt
    17041 attacaacca agcatttatc ttcatctatc ttaataaatt catctttaca gtctaatttc
    17101 atatcgttga tatcattgat gaaatgattt acttgtgctt tagtcatatt tccgtcaaca
    17161 actaaaattg gtaatccatg atttaaatct acttctagtc catttatatg aataccttta
    17221 attttaattg taccaccacc gattgaaata ccgataattt caatgtagcg accatcatta
    17281 cgagatgatt tgatataagc acagtttgga tgttgaccaa tactatcgcc ttcttcttcg
    17341 atgatatcta ttttaatacc atcatcagct gcaatttcta atgaagattt aattcggtta
    17401 tcaaatgttg aatatcccat tgctccaccc acaatagcga catctgtacc atgtccttgg
    17461 tgtgtttgag caaatgattc ataataatgt atttcaatat ttttaggaat atctcccaat
    17521 attgcgcgtg ctgaattccc aatctttact gcaccagccg tatgagaact tgaagggccc
    17581 atcataactg gtccgataat atcgaaagca ctttgataat catagctctt tgccataatt
    17641 aaacactctc cttaatatga ttctttttgc tcggcatttt aaagttgata ttcattaaat
    17701 taaacttatt aattagtgtt ccaataatat aggctaagac aatgctgaca ataatcactg
    17761 ttgcgattgt tacaattgat gtcactgcat tattaaagcc aaacaatacg atggcgcctg
    17821 caattggtgt tgccatacct ttgacaccta ttactagtcc gctaaatgtc acgatacatg
    17881 cgttgacgac cccaatcagt gcatttgtac catatagttg tactggatat tgcgctatta
    17941 aatcaatttg cgtcaatggc tcaatacaaa ctgcaaatgc ttttgacggt ccaccaatgt
    18001 ttaattttcg gaataaaata aggttaacaa atgagctacc tgtacatgtt agtgctccaa
    18061 tagccatagg aacacctgtc agtcctaata aacttgttaa taccattgaa cttagcggtg
    18121 tcatacctgt aacaggaatc actagtccta aaatgaccgc taatgcatat ggattgttat
    18181 cacctaccgc agtgacagca ctacctattt gttttaatgt tgctagcaca ccaggtgtaa
    18241 tgattgatgc aagtccgaaa gcaattgctg gtgcaaataa gatcaccaca attaagtcca
    18301 agccttctgg aactttcttt tcaatccatt taattaaaaa agctacgcca taagctgcga
    18361 tgaatgctgg taataattta aagtcatgta atactaaacc aacaatgacc gcaaatactg
    18421 gtgcaacgcc taagtttaag cacgttagaa tacctactgc gataccgctt aaacttcctg
    18481 ctaaatcccc aatatcttgt agaaatttaa tatcaaatac gccaccaata gcataactta
    18541 agaatgcttg tggtagaaat gtcgcacaag ctgcaccgga taatgcttgt agtccttgtt
    18601 taccgtacgg tgcatacttt aaaaatagcg tcatgatcac taaaaccaag actaatgtgc
    18661 ctacacctaa cagaatatcc atttcccaaa aacctctctc tatgtttatt ttattttcag
    18721 accataaaca tcgtacaccc ttaagaaaac gttttcaact tttatctgtt atcaaatcaa
    18781 atatttaagt gaaatatttg atatttgtga aagattttta aaatggattg tttcaaaaac
    18841 tacttatgtt gtcgttaata tttactaatt aactttttac tctatatttc aaacagttgt
    18901 gtgacagttt tttgataact tttttacatc tgaaagtaag taatatttct aaaaactttt
    18961 aatatttata cactttatct ttcgagctat ttattttttg tttttgtgct gtgtttataa
    19021 aaccgcacac tatattcaaa aataacttat tacacatata tttgcaataa gataattaaa
    19081 gtaggatatt atttttagtt ttctgatagg aatgatgata gtctataggt tgaatcttta
    19141 ctttttttta aagctaaatt tacatcaact taacaatggt tggttatact gaagatgaaa
    19201 atatttagta taacttagtg gaggcgataa aggtgcaatt gagtcattcc gttaaagttg
    19261 caatttctat ctatttagca cttatcttta taacgttcac ttcttattta gtcattattt
    19321 tatatacgag tatgactgga catgatgtat cacatttcgt gttagatagt cagcattctc
    19381 atcatggatc tcttacgcaa aaacatttga gtcttcctga aatctcattt aaatagttta
    19441 tcctctgtgt ttcaacattc atttcccata tcgattcatt tatctatcat ctagaccact
    19501 acatcttaga tgattttttt attttctcat ttcactcttt cttaaaagtc gatataatga
    19561 attaaatcat tatcatacac cgacatattt tatgttgttg gtgttaagtt ttaaaggggt
    19621 gagatacttg gcgaataatc attcagcttt gcgtttaaaa ggaattatac ttgccattgt
    19681 cggtgcttgt ttatggggat taggtggtac tgtttctgat ttcttgttca aatataagaa
    19741 tattaatgtc gattggtacg tcactgctcg acttgtagtc agtggtgttt tcttacttat
    19801 tatgtacaaa atgatgcaac ccaaacgttc aatatttagc gtattccaag atcgacgtat
    19861 gttaggcaaa ttacttatct tcagtatact gggcatgtta gtagtacaat atgcttatat
    19921 ggcatctatt aatacaggta atgctgcgat tgcaacatta ctacaataca ttgcgccagt
    19981 ttatattatt atttggtttg tcataagagg cgttgcaaaa ctaacattat ttgatgtgct
    20041 tgctattatc atgacactat taggaacatt tttattatta acaaatggtt cattttctaa
    20101 tttagtcgtc aatcctgcaa gtttattctg gggtatttta gctggtgtag cactcgcttt
    20161 ttacacaatt tatccttcag acctacttaa ccgcttcggt tcgattctaa ttgtcgggtg
    20221 ggcaatgctt atttctggtg ttgcgatgaa tttacgccat ccaatttggc acattgatat
    20281 cactaaatgg gacatatcaa ttatattatt tttaatcttt ggtattatcg gtggtaccgc
    20341 actcgcattt tatttcttta tcgacagttt acaatacata tcagcgaaag aaacaacatt
    20401 attcggaact gttgaacctg tcgtagccgt tatcgcaagc agtctatggt tacatgtggc
    20461 attcaaacca tttcaaatcg taggcatcat tcttattatg attttaattt tattactatc
    20521 acttaaaaga caacctgaaa cattagatga ataagaaaac tctgataatc actttagcaa
    20581 gtaactatta tttaacaacg tagttacctt ataggtgata tcagagtttt ttattttagt
    20641 taataatatt tttcacttgg tataaaaagc gtcgtcgctc tggtatcgga aatactggat
    20701 aaatatggaa ttggtaatat ccaggtataa agtcatgttc gatacctttc gcactcaaca
    20761 attgcgataa gttcaaagca tctgggtaca gtacttcttt tgtaccaaca gttaatgtaa
    20821 tacgacctaa accatctaag tcaccattaa ttggtgatac tttgtagtta tctaaaggtg
    20881 tgtcccctgc ccattgttca gctaagaaca cactgccatc cacacctacc attgggtctt
    20941 tctttaagta gtcaggaatt tcaggatgct gcatcgttgc atctaaaact ggtgaaatta
    21001 atacaatatg tcctggttgc acaatatgtt tttcttttaa caattgagca aatgataaag
    21061 caatttgacc gcccgcagag tcacccatta caacgatttg tttagaatct gctacttgat
    21121 tcaataaatc atggtacaac ttttcaaaaa gcacatacgt cgcttgataa tcttgatgcg
    21181 gaatcttcgg atatactggc atgatgactt tagcattgag tgtttctgca agttcatcaa
    21241 taaattcgaa atgaattttg agtgggtctt ggaaccatgc gcctccatgt gcatataata
    21301 caacgcgttg atgcttatct tgtttatcgt taacggtata aacggttgaa ccgaagtgct
    21361 tatccacttt tactggcatc ttaaactgat aattggttcc ctcatattcg cctgctgtct
    21421 gtggcgccat tttttctaat gctttcatcg cttcttcttt atacataaaa cgacgcttag
    21481 ctctagataa tcgtatacct tgttctaaca tataactttt cacactgcgt ttttctttaa
    21541 ttctaatatg tgcgtatgct gcaactaaaa atccaaacgc aagtgtagac cattttttac
    21601 gcatttgtcg tcactcctct ttgatgattt ctactatagt tctactgtac catgctgatt
    21661 ctaattacta ccaatattta ctgggaaata agttatgatg tctacataat cttagcaatg
    21721 ctaatcattt gcgatattaa tgctcatcga catcgttatt tacactatca ttcatttgct
    21781 taagatgatg ttcaaaacgt tgcatatcga taaaacgccc ttgacgatgc atttcttttc
    21841 cattcataaa aattaaatcc acaggtacag tgaaaatatt taattctcca gcaatagctt
    21901 ccacctgact ttgattaatc acagctaatg gcacattggg atatgattgc atcaagtctt
    21961 caatttgtgg taaaacggca tgacacacgc tacactgatc gcgcatgaca tgtacaactg
    22021 ctaacggata ttgatgaata aattcacgga atgcttcgac actatttaat tgcttaacca
    22081 tttcgaacac cttcttactt tttatatttt aaaatgaagt cattattttg ttgctaaaat
    22141 gtcttgaaac acttgtggca cagaggttat cttcttatca ctcaatctgt aaaaaccgcc
    22201 tgtctgtgta ccaatacaat gcacgccatg tgcggacaca atttcaaact gaaacaccca
    22261 tttcatcttg cttgctttaa ctaagtaaat acgacctact ggtttgtcat gtattgtgac
    22321 aggtacttta tactctgctt ccgttttcat aagtataggt gaaatgcctt gattgatcat
    22381 tgttgagtaa ttcatgtgct gattaataaa cgctgttctc aaatcttcga accatctaat
    22441 ataaacgata ttactaacga cacccatcgc atcaatgtcg taaccattca cttcgatttc
    22501 tttctctgca actaatagac cttctgttgt cataatgaca aatctcctta tcttacaaat
    22561 agatttaaaa tcatgttaat ttatttttat tactttcatg ataaaaatac aagcaattga
    22621 actttattac ggaaaatcaa acttttcaat gagactatta atttggctag tcgcgaagat
    22681 gcatttttct aaaatgtgac aaaaacataa gcaatgtttt ctatatctaa cactaatatt
    22741 taacttatta tcatcaacac acctgctata catcattgcg cactaaaaag gcagtagctt
    22801 cattttaagc tactgccttt tgtaacgtat tctctttcaa ctcgctactt cgcatacgca
    22861 ctacgaatga ctaaaagttc attcatttga tatgctgttt catttttaat cattatttga
    22921 ctgtcataat tagcttacct ggatcagcat cttgtacatc ttcaatgaca agttctttat
    22981 tttcaagatt tgtaataatc attggtgtaa cgatgcttgg tgcgtgtgct ttcaagtatg
    23041 ctaaattcac tttcattaat ggttgacctt gtgttacttt ttcatcaacg ttaatcagac
    23101 tttcgaatcc ttcaccattc agtttcactg tatcgatacc aatatgaata agtacttcga
    23161 cgccactttc agattctaat cctatcgcat gtttcgtagg gaagattgtt ttcactgtac
    23221 catcaaacgg tgctacaatt tcaccttttt cagggataaa gccaacacca tcacccatca
    23281 ttttaccagc gaacacttga tcaggtactt ctgataatgg aatgatttga ccgatacctg
    23341 gtgcatagat gtctgttgtt ccaagtgctt ctacgtgaac tggttcatct gacatttctt
    23401 cagtcactgt cgtttcactt ggtttcgtaa tttcaccact cataatcttg gccatatcat
    23461 gtttaatttg atctgatttt ggaccaaaga tagcttgcat attgtttcca acttctaata
    23521 cacctgatgc gcctaaagct ttaatacctg ctacatctac ttttgattta tcaaccactt
    23581 ctacgcgtag acgtgtaata catgcatcta aatgtttaat gttttctttt ccacccattg
    23641 catctaagac atcaaatggt aattttgcga cactagagtt acgaatttca gtttcttcat
    23701 cttcacgacc tggtgttttc aatttaaact tacgaattgc aaagtcgaat aagaagtaat
    23761 acacgatagc atatacaata ccgactggaa taactaataa tgcgtgtgaa cgatcccagt
    23821 ttaataaacc atataaaata taatctatga aaccacctga gaatgtcata ccaattttaa
    23881 cgcctaataa atgcattact aagaatgatg taccagctaa taatacgtga attccataaa
    23941 gtactggtgc tacaaataag aatgaaaatt ctaatggctc agtgatacca gttaaaaatg
    24001 cagttaatcc tgctgataac attaaaccac ccacgacttt tttacgttct ggtcgtgcat
    24061 ttttataaat agcaaatgcc gccgctggta aaccaaacat cataaatgga tatttaccag
    24121 tagtaaatgc accagcagta aatggtacgc catctttcaa ttgtgccatc caaatacgtt
    24181 ggtcaccacg aaccaattca cctgcgtgat ttgtataact tccgaattca aaccagaacg
    24241 gtgaatagaa aatatgatgt aaaccaaatg gaattaatga gcgttcaata ataccgaata
    24301 taaacgttgt taatgttaaa tttttattta ataagaaatt cgataaacta tttaatccat
    24361 cttgaattgg tggccacgca aagcttaaaa gcacacctgt tgcgattgct acgaccgatg
    24421 tcacaatcgg tacaaatcgt ttacctgcaa agaatcctaa aaatggtggt agtgtaatat
    24481 tataaaattt gttgtaacac catgcggcta aagcacccat gataatacca ccaaacacac
    24541 ccgtttgtaa cgttggaata cctaatacta aagcatgtgc tggttctttc gctgcttgac
    24601 ttaattcttt tgcccctttg gcatatgaga aaatgtcatc aattgtaatg tgcaacactt
    24661 tccccattgt tgcattcata attaagtaac ctactagcgc tgctaatgct gcaacaccgt
    24721 ctcctcctgc taatccaagt gctgtaccaa ctgcaaataa taatggcaag ttatcaaata
    24781 caacttgtcc tgctgcttcc atgaccgacg aaatcattac aatgatatcg ttttttaacc
    24841 atggtgcaat ttctactaat tgttcgttgt gcattgcgtt accaaacgct aataaaatac
    24901 cagctgctgg taaaatcgca acaggtaaca ttaatgcttt accgatacgt tgcaattgtc
    24961 caaacaattt cttaaacata taaacatccc ctatctcaat ttccgcttcc atgtacaaaa
    25021 aaagcaggca tgaacaaaca agactattct catagtgcgg ttgtttgctc atgcctgcat
    25081 taccagtaac acgcaagtga tatctaattc atagctatta tacatatttg taaaagcgtt
    25141 ttcaacaact ttttcacaat tttatcatca attcagtacg atcatttgtg ataaataaac
    25201 aaaacggcaa ttcccatttt gttgaaatag aaattaccgt ttttatagtt caattcaatt
    25261 gtgataacct ttaaatcagt tataagaaac gttttgctgc cactgaaatt ggtggaattt
    25321 gatctaaatc taaatgttta tcttcagtaa ttgatctaaa tgcccactta ccataaccaa
    25381 gcgcttcttc atttacaatt ttacctggta atggcgcagc attaggatca acatatacat
    25441 ctacaatcgt tggtacatct tgtgctaatg cctcttcgac tatagcatct acttcgctag
    25501 cactcttaat tgtataacct ttaccacctg ctgcctcagc aaattttgca tgatccatat
    25561 cagaaaaatc aactgcatat tctaattcac cagctgcttg ttgttcatat ttaataaatg
    25621 ctaactgttt gttattaagt acaaatacag ttaaaggtaa atcatattgt actgctgtag
    25681 cgaagtcttg cattaccatt tggaatgcac cgtcaccagc aattgcgatg gcttgtctat
    25741 ttggatatgc aatttttgat gcaattgcac ctggaagacc gcaacccatt gtacctaacc
    25801 aacttgaaat gatgaacttg ttatttacac caaggtttaa gtatcgagtt gaccaaactg
    25861 ttgctgtacc tacatctgct gaaatcactg catcatcttt aataaattta ttgattgatg
    25921 ccattaatcg ttctggacgt aatggtttac tattattatt tttatcttgt tccatccatt
    25981 tatcccaaac cgctttacgt tctaacgttt tgtttaagaa tggtctttca gcaacatgtt
    26041 taatattttc agttaactga tgcaacgcaa ttttactatc tccaacaatt cctacattaa
    26101 tattgaaacg atgtccgata tttttaggat ttgtgtcaat ttgaatggct ttaatatttt
    26161 tcttaggtaa gtaatccaca tatggatagt ttgtaccaac cataattaat aaatccgctt
    26221 cctgcattgt ttgataagat gttttggtac cgattttacc taagttaccg atactatatg
    26281 gatgatcatc cggcaagatt gttttagctg gtaatgaatg aatgacagga attttagcca
    26341 tttcaataaa ttcacgtagc tcatctttcg catgtttcgc acctacacca attaacatga
    26401 caggcttttt acttttatta attagtttaa ccgctttttt gatgtcttta tattttggtg
    26461 atactactgt tggtcttgat gtatctactg gtttattcgt tgtatcttta attttttcag
    26521 ttaataagtc gttaggacaa ataacaacag ctacaccttt ttgttcatat gccgtacgaa
    26581 ttgcttcgtt aacgatttca aacacattgt cacctttttc aatttggtga ttataaacgg
    26641 ctacatcttc acataatttt tgtaaatttg tttcttggaa tgctttcgtt ccaagtgctg
    26701 tactattcgt ttgtccagat aatattaatt gcggtacatt atccattttg gcatcataca
    26761 taccatttaa taaatgaatt aaaccagggc caccgatact taatgccaca ccgattttac
    26821 cagttaattt tgtgtaacca gcagccgcta agcttgctac ttcttcatga cgtacatgat
    26881 aaaatttaaa ttgatctctc actgtacgta aactatcgac tactgcgtcg attgagtctc
    26941 ctggaatacc atacaagtga tctatatccc atgcttgtaa tgctttaact aatgcttcat
    27001 ttgcttttat ttttgccatt attactaata gcctcccttt ctgtctatca ttttaaatat
    27061 ctaaattaat agaataataa aattagaaca ggtattaaca ctgaactaat aactgcagtt
    27121 aaaatcatcc caattgaact aaatgcaccg gattcaatat ccatttctag tgctttagct
    27181 gtgccaaatg catgtgacgc attcccatac gttaatcctt tggcgataga agattcaaat
    27241 cttccaaatc ttaataacat cgaacctaaa atactaccga ttaaacccgt tgtgataata
    27301 aaaagtacgg tcatcgtatc tgtaccacct agttcatgtg acacttcgat acctactgcg
    27361 gctgttatag atcggggcaa taacgttaca atgacgtctt tagaatagcc aaatgcttta
    27421 agtgttaaga acactaacat gaaattcagc atgacgccag ttaatacact tgcaaaaatg
    27481 atagagacat tgtctttaat tttctctcta tttttataaa gtgggtacgc taaacatacg
    27541 accgttgcgt ttaaaatatg gttgatccaa ctgccacctt tcatataccc gttataacta
    27601 attccaaaga taagtaagac aaaaataatt cctaaagatg caattaatgc tggattcaaa
    27661 aatgggttcg gatatttttg ttgtaacctt ttagcgaaat aatataaaac gacagtcaac
    27721 aaaatcatta ataaggcttg cacgtaatca ttcataagcg tctacacctt tacgatgttt
    27781 atgtttaaca gacatttttt cagcaatata acctgaagat aatgcaacga tacatgttcc
    27841 tatgataatg actgcgaaaa agagtatata atttagcgta atttcggaag caacatccat
    27901 aatacctaca actgacggta tgaagaaaaa gaccatcgtc tttaataaaa agtttgcacc
    27961 gtcttctacc caagttagcg gtacaatctt aaattgtaat agtaaataaa ataaaaatag
    28021 accaacaata ctgccggcta agggaagatg aaaaatcttt tgaatttctg tgccaatata
    28081 agtaatcaca atgatgattc ctagttgtag tagtagtttg attattaatt ggactttgtg
    28141 catggcgcca tccctttcta aatatgtcta aattgttaca ataactatta taaagatggc
    28201 gtacacaata taaaaatact ctttttttat agtttgtatt actattttct atggaaacgc
    28261 tctctaaatt tcacttcatt ttcacaaaaa aacactcatt atttcaatga cccacgtaat
    28321 gatgcgcctt aaataatgag tgctttatta atatgttagc ctaaacggtc tttcaaaaat
    28381 tctatccatt tcgttgtggc atgacttaat tgtttatcct tcttccaaac aacacctaat
    28441 tcccaatgta catgagcatc ttcaatgcgt agcagcttca catctccatt tagttgctct
    28501 gaaattgatg ttggtaaaat actaatacct aattcattcg taactaaatc ttctataaca
    28561 tgccattgtg aaatttgcgc tacagtattc ggaacaaagc caacgttttt agcattttca
    28621 ataattttat cattcaagta aaagtcttta ttaaataaaa tgaagtcttc acctgctaaa
    28681 tcttcgagtt taacagtttc atattttgcg agtcgatgct ctctgctcac gataagtcgc
    28741 aaatcttcct tatctagggt agtataatcg aaaatatgat gatcgactgg caaagtggtc
    28801 acgcctatat ctacttcatc attgataatt tgctgttcaa ttgttttacc gccattttct
    28861 atcaaattat atgtaacatt tggatattgt tgatggaatg caccaagaat attgataaga
    28921 atcttcatat tcatgactgc cgacatgccc atgtttatat gtcctgtttc cagtccattc
    28981 aagcgttcca tttcagatgg taaataatca tacagtgcaa caatttcttt acttttctca
    29041 taaaaaattt gacctgcatc ggtaagaatt aaatgtcttt tacttctatc aaataagggc
    29101 gtgcccattt cattttcaat atctttaatt gctttactaa ttgtaggttg tgcaatatat
    29161 aatgatttgg aagcattagt catgcctcct tgcttaacga cttcaataaa atatttcata
    29221 tgtttgatat ccactaacat catcctaact atttcaacac gtttatttca ttatacacaa
    29281 cttcttaaac attcaataaa tttagattta taaaattgct ttataaaaag ttttatgtaa
    29341 aatacacatt cttttatggt attatattaa tggctcaagt atattaatcg aggtgaggta
    29401 ttgagctttt acgaatttat gcaaagtttt cttggtgatg acacaccatt aggtgaattg
    29461 gttgattgga ttaatcaaga tagcaatttc cctagagaag tgaagagcca tagtgaaata
    29521 ttgtcatatt ttcgaacaaa tccatgtcct gaaagcatct cagtacctgt aattaaacgg
    29581 gcactatcag ttttcaacca attcacaaat gtacaatgat acatgaatac atggagtcac
    29641 atcatctcat gttagcgctc tgattgcagg gcgctatttt taatgttatt gctacattta
    29701 gtatattgtg attgctattt tctttcagtt atagaaccat gtaccttttt tttaaatcat
    29761 tttatatttt cccactaata tccgctgtta atcaatcctg acatccttgt atcactatga
    29821 caattaattg ttaaatacat gaatttctac attttatgaa aaaatccatt tttattacaa
    29881 ttcaacactt tatatgacaa cttcattaca gttactttta ttgttgattg cttacattgt
    29941 tttctaaaaa aaatttgtta tcataattaa cgttgaataa agaaaaaaat taacttggga
    30001 gataaaaatg gaatataaaa agatactaat tcgtttatta attgcttttg cagtactttt
    30061 ctcagcagat ttcacttatc aatccgtcga acaaacgcat caatcgcatg ccgcagttaa
    30121 ttattatagt aaaaaccaat gtacatggtg ggcatttaaa cgtcgcgcac aagtcggtaa
    30181 acctgtttct aatagatggg gcaatgctaa aaattggtat tacaatgcac gtaaatcaaa
    30241 atatgcgact ggtcgtacac caagaaaatt tgctgtcatg caatcaactg caggatatta
    30301 tggacatgtc gcagttgttg aacaagtata taaaaacggt agtattaaag tttcagaata
    30361 caacttttat cgcccattaa aatacaatac acgtgtacta agcaaaaagg cagcacgtaa
    30421 ctttaactat atttactaat caaaaaactt ctatcacgaa cgcttcaat
//
LOCUS       DAMQWL010000020        30218 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.020, whole genome shotgun sequence.
ACCESSION   DAMQWL010000020 DAMQWL010000000
VERSION     DAMQWL010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 30218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30218
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.020"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            54..932
                     /locus_tag="PF788_000823"
     CDS             54..932
                     /locus_tag="PF788_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EMYY motif lipoprotein"
                     /protein_id="HDG6303097.1"
                     /translation="MKKIVIIAVLAILFVVISACGNKEKEAQHQFTKQFKDVEQKQKE
                     LQHVMDNIHLKEIDHLSKTDTTDKNSKEFKALQEDVKNHLIPKFEAYYKSAKNLPDDT
                     MKVKKLKKEYMTLANEKKDAIYQLKKFIGLCNQSIKYNEDILDYTKQFEKNRYKVESE
                     IKLADNKSEATNLTTKLEHNNKALRDTAKKNLDDSKENEVKGAIKNHIMPMIEKQITD
                     INQTNISDKHVNNARKNAIEMYYSLQNYYNTRIETIKVSEKLSKVDVDKLPKKGIDIT
                     HGDKAFEKKLEKLEEK"
     gene            1086..1406
                     /gene="ytxJ"
                     /locus_tag="PF788_000824"
     CDS             1086..1406
                     /gene="ytxJ"
                     /locus_tag="PF788_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol system redox-active protein YtxJ"
                     /protein_id="HDG6303098.1"
                     /translation="MAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFL
                     YERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGEMVWNRDHGDINVSSLA
                     QAEE"
     gene            1831..2955
                     /locus_tag="PF788_000825"
     CDS             1831..2955
                     /locus_tag="PF788_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDG6303099.1"
                     /translation="MKVLVAMDEFHGIISSYQANRYVEEAVASQIETADVVQVPLFNG
                     RHELLDSVFLWQSGQKYRIPVHDADMNEVEGVYGQTDTGMTVIEGNLFLKGKKPIVER
                     TSYGLGEMIKHALDNDAKHVVISLGGIDSFDAGAGMLQALGAQFYDDEGRVVDMRQGA
                     GVIKYIRRMDMSNLHPKMETARIQVMSDFSSRLYGKQSEIMQTYDAYQLNHNQAAEID
                     NLIWYFSELFKSELKIAIGPVERGGAGGGIAAVLNGLYQAEILTSHALVDQLTHLENL
                     VEQADLIIFGEGLNENDQLLETTTLRIAELCHKHQKVAIAICATAEKFDLFESQGVTA
                     MFNTFIDMPETYTDFKMGLQIRHYTVQSLKLLKTHFNVEV"
     gene            complement(3144..4370)
                     /gene="pepT"
                     /locus_tag="PF788_000826"
     CDS             complement(3144..4370)
                     /gene="pepT"
                     /locus_tag="PF788_000826"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDG6303100.1"
                     /translation="MKNQLIDRLTRYTTIDTQSDPKSTTTPSTEKQWDLLHLLEKELQ
                     QLGLPTDLDENGYLFATLESNIDVDVPTVGFLAHVDTSPDFNASNVKPQIIENYDGKP
                     YKLGNTKRVLDPKVFPELNSLVGHTLMVTDGTSLLGADDKAGIVEIMEAICYLQEHPE
                     IKHGTIRIGFTPDEEIGRGPHKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITC
                     HGVNVHPGSAKNAMVNAIRLGEQFDSLLPDSEVPERTEGYEGFYHLMNFEGTVEKATL
                     QYIIRDHDKKQFELRKKRILEIRDDINAHFENYPVKVDISDQYFNMAEKILPLPHIID
                     IPKRVFAKLDIPANTEPIRGGTDGSQLSFMGLPTPNIFTGCGNFHGPYEYASIDVMEK
                     AVQVIIGIVEDIAENH"
     gene            complement(4384..4878)
                     /locus_tag="PF788_000827"
     CDS             complement(4384..4878)
                     /locus_tag="PF788_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDG6303101.1"
                     /translation="MLFYLFHFTISFISTVLFSIIFNAPKRLLVACGFVGAIAWTIYQ
                     LTVDLEFGKVGASFLGSLILGLMSHTMSRRYKRPVIIFIVPGIIPLVPGGAAYQATRF
                     LVSNDYTSAVNTFLEVTLISGAIAFGILVSEILYYLYTRIKQLYGKIKGKTYKKSYNM
                     NNRV"
     gene            complement(4896..5657)
                     /locus_tag="PF788_000828"
     CDS             complement(4896..5657)
                     /locus_tag="PF788_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HDG6303102.1"
                     /translation="MPDSITIIDENKVIDVVLIAGRILLESGAETYRVEDTMNRIAHS
                     YGLHNTYSFVSSTAIIFSLNDRTSTRLIRVQERTTDLEKIALTNSLSRKISNKELTID
                     EAKSEFIHLQHASLQYSFLTNFFAAAIACGFFLFMFGGVASDCWIAVIAGGSAFLTFS
                     FVQRYIQIKFFSEFVAAAVVISIAATFTKLGIATNQDIITIASVMPLVPGILITNAIR
                     DLLAGELLAGMSRGVEAALTAFAIGAGVAIVLLII"
     gene            complement(5853..6923)
                     /locus_tag="PF788_000829"
     CDS             complement(5853..6923)
                     /locus_tag="PF788_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HDG6303103.1"
                     /translation="MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIV
                     SLLLSVYPIPYREDYLIHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYG
                     VTLIVIAAVTSAIGPFLKQNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPIS
                     LIITLASAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQ
                     SIALLLIDIDGFKDVNDTYSHKSGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIH
                     NYSLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDAD
                     DMVHVAKNQGRNKVMFNPIINL"
     gene            7241..8296
                     /locus_tag="PF788_000830"
     CDS             7241..8296
                     /locus_tag="PF788_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HDG6303104.1"
                     /translation="MVTLLLVAVTMIVSLTITPIVIAISKRLNLVDKPNFRKVHTKPI
                     SVMGGTVILFSFLIGIWIGHPIETEIKPLIIGAIIMYVLGLVDDIYDLKPYIKLAGQI
                     AAALVVAFYGVTIDFISLPMGTTIHFGFLSIPITVIWIVAITNAINLIDGLDGLASGV
                     SAIGLITIGFIAILQANIFITMICCVLLGSLIGFLFYNFHPAKIFLGDSGALMIGFII
                     GFLSLLGFKNITIIALFFPIVILAVPFIDTLFAMIRRVKKGQHIMQADKSHLHHKLLA
                     LGYTHRQTVLLIYSISILFSLSSIILYVSPPLGVVLMFVLIIFSIELIVEFTGLIDNN
                     YRPILNLISRKSSHKEE"
     gene            complement(8466..9107)
                     /locus_tag="PF788_000831"
     CDS             complement(8466..9107)
                     /locus_tag="PF788_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDG6303105.1"
                     /translation="MTQNIITVKKEHIIENVISKSRFIAHIKPVQNEDEAKAFIAAIK
                     KEHKDATHNCSAYTIGPEMNIQKANDDGEPTGTAGVPMLDILKKLDVHNACVVVTRYF
                     GGIKLGGGGLIRAYSGAVRDVIYDIGRVELREAVPCIVTLNYDQTGKFEYELASTHFM
                     LRNQTYTDKVSYYIDVVKSDYEAFINFLNQMTAGNFDLTEETPKQLPFDIPTE"
     gene            9251..10117
                     /gene="fakB1"
                     /locus_tag="PF788_000832"
     CDS             9251..10117
                     /gene="fakB1"
                     /locus_tag="PF788_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000686350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid kinase binding subunit FakB1"
                     /protein_id="HDG6303106.1"
                     /translation="MKIAVMTDSTSYLSQDLIDKYNIQIAPLSVTFDDGKNFTESNEI
                     AIEEFYNKMASSQTIPTTSQPAIGEWITKYEMLRDQGYTDIIVICLSSGISGSYQSSY
                     QAGEMVEGVNVHAFDSKLAAMIEGCYVLRAIEMVEEGYEPQQIIDDLTNMREHTGAYL
                     IVDDLKNLQKSGRITGAQAWVGTLLKMKPVLKFEDGKIIPEEKVRTKKRAIQTLEKKV
                     LDIVKDFEEVTLFVINGDHFEDGQALYKKLQDDCPSAYQVAYSEFGPVVAAHLGSGGL
                     GLGYVGRKIRLT"
     gene            10481..11563
                     /locus_tag="PF788_000833"
     CDS             10481..11563
                     /locus_tag="PF788_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011382223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDG6303107.1"
                     /translation="MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRK
                     RQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVSPRVDVVVEISKRIKDAFLNEDI
                     DILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
                     VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYR
                     ILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHF
                     DVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGV
                     SMNMIQAKKEIQRMNKLALKRGWIDE"
     gene            11556..12230
                     /locus_tag="PF788_000834"
     CDS             11556..12230
                     /locus_tag="PF788_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HDG6303108.1"
                     /translation="MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKA
                     RRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFLKDYYL
                     CELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPK
                     QSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFK
                     VFAFAR"
     gene            12291..12863
                     /gene="raiA"
                     /locus_tag="PF788_000835"
     CDS             12291..12863
                     /gene="raiA"
                     /locus_tag="PF788_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDG6303109.1"
                     /translation="MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKV
                     KTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRD
                     RGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDF
                     FVFTDRETDGTSIVYRRKDGKYGLIQTSEQ"
     gene            13277..15808
                     /gene="secA"
                     /locus_tag="PF788_000836"
     CDS             13277..15808
                     /gene="secA"
                     /locus_tag="PF788_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDG6303110.1"
                     /translation="MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKT
                     KQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGD
                     IAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGL
                     NLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSI
                     LIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAE
                     RMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRR
                     FSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYN
                     MTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEY
                     ISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEEL
                     GGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSR
                     LGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSII
                     DEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKG
                     KDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQG
                     IHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFG
                     EAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK"
     gene            15850..15954
                     /locus_tag="PF788_000837"
     CDS             15850..15954
                     /locus_tag="PF788_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303111.1"
                     /translation="MLWEESFYFTSVKYFKKCEEVVKRCYVLSFKKSV"
     gene            16123..17233
                     /gene="prfB"
                     /locus_tag="PF788_000838"
     CDS             join(16123..16194,16196..17233)
                     /gene="prfB"
                     /locus_tag="PF788_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667688.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDG6303112.1"
                     /translation="MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPN
                     FWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEV
                     INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGF
                     KVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFAS
                     CDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQN
                     ERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMV
                     KDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD"
     gene            17387..17494
                     /locus_tag="PF788_000839"
     CDS             17387..17494
                     /locus_tag="PF788_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303113.1"
                     /translation="MCLLKQHMQCAFSNITYGDFQGIELIIENVLNYMV"
     gene            17642..18481
                     /locus_tag="PF788_000840"
     CDS             17642..18481
                     /locus_tag="PF788_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDG6303114.1"
                     /translation="MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQ
                     AQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQ
                     TKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPT
                     VPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFK
                     VDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYN
                     YIH"
     gene            18655..19305
                     /locus_tag="PF788_000841"
     CDS             18655..19305
                     /locus_tag="PF788_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDG6303115.1"
                     /translation="MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYL
                     ATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVET
                     FIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFE
                     IYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE"
     gene            19302..19538
                     /locus_tag="PF788_000842"
     CDS             19302..19538
                     /locus_tag="PF788_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbA family protein"
                     /protein_id="HDG6303116.1"
                     /translation="MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEY
                     FHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR"
     gene            19807..21792
                     /gene="uvrB"
                     /locus_tag="PF788_000843"
     CDS             19807..21792
                     /gene="uvrB"
                     /locus_tag="PF788_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002473941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HDG6303117.1"
                     /translation="MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATG
                     TGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEA
                     YVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLV
                     VSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEF
                     FGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKEL
                     RDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDD
                     WLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLV
                     YVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERV
                     LVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLR
                     EGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAI
                     DETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKER
                     QKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG"
     gene            21800..24646
                     /gene="uvrA"
                     /locus_tag="PF788_000844"
     CDS             21800..24646
                     /gene="uvrA"
                     /locus_tag="PF788_000844"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDG6303118.1"
                     /translation="MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVAT
                     VTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHR
                     KGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETR
                     LADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGAC
                     PTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDK
                     PFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEY
                     TREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSE
                     HDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGV
                     LYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGE
                     HGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKG
                     VDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDK
                     IIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEA
                     CKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFF
                     ENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDE
                     PTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIV
                     ATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK"
     gene            25308..26240
                     /locus_tag="PF788_000845"
     CDS             25308..26240
                     /locus_tag="PF788_000845"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HDG6303119.1"
                     /translation="MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSH
                     YASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKE
                     LNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSET
                     ALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSI
                     LTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVA
                     AMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE"
     gene            26246..27085
                     /locus_tag="PF788_000846"
     CDS             26246..27085
                     /locus_tag="PF788_000846"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDG6303120.1"
                     /translation="MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVK
                     AGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIG
                     GFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLH
                     LPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGR
                     FFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTK
                     KVK"
     gene            27093..27578
                     /locus_tag="PF788_000847"
     CDS             27093..27578
                     /locus_tag="PF788_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDG6303121.1"
                     /translation="MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMV
                     LKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEF
                     RYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIR
                     R"
     gene            27586..29025
                     /locus_tag="PF788_000848"
     CDS             27586..29025
                     /locus_tag="PF788_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDG6303122.1"
                     /translation="MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLEL
                     SPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKA
                     FLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKD
                     AKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTL
                     LLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKF
                     LSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPL
                     LQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLD
                     FIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQP
                     RNVTKKQITTWLGITQYKLNKMIEFLLSI"
     gene            29092..30027
                     /gene="trxB"
                     /locus_tag="PF788_000849"
     CDS             29092..30027
                     /gene="trxB"
                     /locus_tag="PF788_000849"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDG6303123.1"
                     /translation="MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMA
                     NTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKEL
                     TAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEG
                     TFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTL
                     TSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAG
                     DVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA"
BASE COUNT        10888 a         4207 c         5624 g         9499 t
ORIGIN      
        1 cattttcata ataaacatgt ttttgtataa tgaatctgtt aaggagtgca atcatgaaaa
       61 aaattgttat tatcgctgtt ttagcgattt tatttgtagt aataagtgct tgtggtaata
      121 aagaaaaaga ggcacaacat caatttacta agcaatttaa agatgttgag caaaaacaaa
      181 aagaattaca acatgtcatg gataatatac atttgaaaga aattgatcat ctaagtaaaa
      241 ctgatacaac tgataaaaat agtaaagaat ttaaggcact acaagaagat gttaaaaacc
      301 atctcatacc taaatttgaa gcatattata agtcagcaaa aaatttgcct gatgatacaa
      361 tgaaagttaa gaaattaaaa aaagaatata tgacgcttgc aaatgagaag aaggatgcga
      421 tatatcaatt aaaaaaattc ataggtttat gtaatcaatc tatcaagtat aacgaagaca
      481 ttttagatta tacgaaacaa tttgaaaaaa atagatacaa agttgaatca gaaattaaat
      541 tagctgataa taaaagtgaa gcaactaatc ttacgacaaa attagaacat aataataaag
      601 cgttaagaga tactgcgaag aagaacctag atgatagtaa agaaaatgaa gtaaaaggcg
      661 cgattaaaaa tcacattatg ccaatgattg aaaagcaaat taccgatatt aaccaaacta
      721 atattagtga taagcatgtt aataatgcaa ggaaaaacgc aatagaaatg tattacagtc
      781 tgcagaacta ttataataca cgtattgaaa caataaaggt tagtgagaag ttatcaaaag
      841 tcgatgtaga taagttgccg aaaaagggta tagatataac tcacggcgat aaagcctttg
      901 aaaaaaagct tgaaaaatta gaagaaaaat aactataatc atttttcaaa gttaaaaatt
      961 ttgaatttat ggttaacatg tcaacttact atgtgtataa tggtaaacat tgatattaac
     1021 tatatgtata aaaatgtcac gcagatgcta tttaaatgtg ataaatattt ttagaggtga
     1081 atagagtggc tataaagcta agttcaattg accaatttga acaggttatt gaggaaaata
     1141 aatatgtttt tgtattaaaa catagtgaaa cttgtccaat atcggcaaat gcgtacgatc
     1201 aatttaataa atttttatat gaacgcgata tggacggtta ttatttgatt gtccaacaag
     1261 aacgcgattt gtcagattat attgctaaaa aaacgaacgt taaacatgaa tcacctcaag
     1321 cattttattt tgtaaatggt gaaatggttt ggaatcgaga ccacggtgat atcaatgtgt
     1381 cgtcattagc acaagcagaa gaataatgaa actatagggt tggaacattt tgccttacac
     1441 tactagacgt gaatagcaca acttaaattc gtgtgaatca gagtagtttg gctataatga
     1501 tgttctgacc ttttatttta tgtcaccttt agaagcagtt aagttagtac ttttttacaa
     1561 acatatgtat aatatattcg agtattttta ttgaaaatat tttggaaaac gacgaatcca
     1621 ataagaaaat ttaaacatga tttgtaagtt agtttaatag gaaatatatg ctaaaccaaa
     1681 agaagcatat tgttatttac tggaataatt aataatcatg tcatgttaaa tgttcgcata
     1741 taatcacgag ataaaatcta aaatttaaga ttaatctttt atgaataaaa aacgtatcac
     1801 aacaaataat aaagtaaggt ggtcaaggtt atgaaagtat tagtagccat ggatgagttt
     1861 catggaatta tttcaagtta tcaagctaat agatatgttg aagaggcagt tgcaagccaa
     1921 attgaaactg cagatgtagt tcaagtacca ttgtttaatg gaagacatga attattagat
     1981 tctgtatttt tatggcaatc tgggcaaaag tatcgtatac cagtacatga tgcagatatg
     2041 aatgaagttg aaggtgttta cggacaaact gatacaggga tgaccgttat cgaggggaat
     2101 ttatttttaa aaggtaaaaa accaattgtt gaacgaacaa gttatggttt aggagaaatg
     2161 attaaacatg cattagataa cgacgcaaaa catgttgtaa tttcactagg tgggattgat
     2221 agttttgatg ctggtgcagg tatgttacaa gcattaggtg ctcaattcta tgatgacgaa
     2281 gggcgtgtcg tagatatgag acaaggtgct ggtgtaatta aatatattcg tcgtatggat
     2341 atgtcgaact tacaccctaa aatggaaaca gcaagaattc aagtaatgtc ggatttttca
     2401 agtcgattat atggtaagca aagtgaaatc atgcaaactt atgatgcgta tcagttgaat
     2461 cataatcaag cagcagaaat cgataattta atttggtatt ttagtgagtt atttaaaagt
     2521 gaattgaaaa ttgcaattgg tccagttgaa cgtggtggtg ctggtggtgg aattgcagca
     2581 gtcttgaatg gactgtatca agctgaaata ttaaccagtc atgcattagt agaccaacta
     2641 acacatttag aaaatttagt tgaacaagcg gatttaatta tttttggaga aggattaaat
     2701 gaaaatgatc agttgctaga aacgacaaca ttgcgtattg cagaactttg tcataaacat
     2761 caaaaggttg ccattgcaat ttgtgcaact gctgaaaagt ttgatttatt tgaatcacaa
     2821 ggggttacag caatgtttaa tacatttatc gatatgccag aaacttatac tgactttaaa
     2881 atggggttac aaattaggca ttatacggtt cagtctttaa aactgttgaa aacacatttt
     2941 aatgttgagg tttagtaaag aaggactaaa ttggtgatgc tgtcatgatg gttaataaca
     3001 tttatgatgg ttagcaaaac gaattagaag atcgaaagta tacgtaaaaa atatgaaaaa
     3061 tcacgctatc attgcactga atgttagcgt gatttttata tattaattaa gcctgagttg
     3121 aactagtata taatcgttgg tttttagtga ttttcagcga tatcttctac aattccaatg
     3181 attacttgta ctgctttttc cataacatca atggatgcat attcatatgg gccgtggaag
     3241 ttaccgcaac ctgtaaagat gtttggagtt ggtaacccca taaatgacaa ttgtgaacca
     3301 tctgtaccac cgcgaatagg ttcagtgttt gctggaatat ctaatttggc aaagacacgt
     3361 ttaggtatat caataatatg aggcaatggt aatatttttt ctgccatatt gaaatattga
     3421 tccgatatat caactttaac tggataattt tcaaaatggg cattgatatc gtcacgtatt
     3481 tctaaaatac gtttcttacg caattcgaat tgttttttat catgatcacg aataatgtat
     3541 tgcaaagttg ctttttcaac agttccttca aagttcatta agtgataaaa gccttcgtat
     3601 ccttctgttc gctccggaac ttcactatca ggtagcaaac tatcgaattg ttcacctaaa
     3661 cgtattgcgt ttaccattgc atttttagct gaaccaggat gaacatttac accgtggcat
     3721 gtaataaccg cttcagcagc gttaaagctt tcatattgta attctccata ttgactacca
     3781 tccatagtat aagcaaaatc agcattgaag cggtcaacat caaatttatg tggaccacga
     3841 ccgatttctt cgtctggtgt aaatccaatg cgaatggtac catgtttaat ttctggatgt
     3901 tcttgtaaat aacaaatagc ttccataatt tccacaatac ccgctttatc gtctgcacct
     3961 agtaacgatg taccatcagt taccattaat gtatgaccaa ctaaactgtt aagttctgga
     4021 aatactttag gatctaagac acgtttagta ttgcctagtt tgtatggctt accatcatag
     4081 ttttcaataa tttgcggttt aacatttgaa gcattgaaat caggtgatgt atcaacatgc
     4141 gccaaaaatc caactgttgg gacgtcgaca tcgatgttac tttctaatgt agcaaataag
     4201 tagccatttt catctaaatc agttggcaat cctaattgtt gtaattcttt ttctaataaa
     4261 tgtaacaaat cccattgctt ttcagttgaa ggtgttgttg tagattttgg atcagattgc
     4321 gtatcaattg tcgtatatct tgttaatcta tctatcaatt ggttcttcat tatattcgac
     4381 cccttaaact ctattattca tgttgtaaga ttttttatat gtcttacctt tgattttacc
     4441 atacagttgt ttgatacgtg tgtataggta atatagaatt tcagaaacta atataccgaa
     4501 agcaatcgca cctgaaatca gtgtaacttc taaaaatgta tttacagcac ttgtataatc
     4561 atttgatact aaaaaacgag tcgcttgata agctgcacca ccaggtacta atggtataat
     4621 gcctggcact atgaatataa ttaccggtcg tttatatctg cgactcatag tatgactcat
     4681 taagcctaaa attaagcttc ccaaaaatga agcgccaact tttccaaact ctaaatctac
     4741 cgttaattgg taaatcgtcc atgcaatggc acccacaaat ccacatgcta ctaagaggcg
     4801 tttgggtgca ttgaaaatga tagagaaaag tactgttgat ataaagctga ttgtaaaatg
     4861 aaataaataa aatagcatgc tttaacagtc cttccttaaa tgattaataa aacgattgcg
     4921 acaccagcac cgattgcgaa tgctgttaat gcagcttcaa caccgcgaga catacctgca
     4981 agtaattcac ccgctaataa atctcgaatg gcattggtaa ttaatatacc agggacaagt
     5041 ggcatgacac tggctatagt aatgatatct tgattggttg caatgcctaa tttagtaaat
     5101 gtggctgcaa tggatatgac cacagcggct gcaacaaact ctgagaaaaa tttaatttgt
     5161 atatagcgtt gcacaaagct gaatgttaaa aatgcggatc cgccagcaat gactgcaatc
     5221 caacaatctg atgcgacacc accaaacata aataggaaga agccacatgc aatggcagct
     5281 gcaaagaaat tcgttaaaaa agaatattgt aatgatgcat gctgtaaatg aataaattca
     5341 gatttagctt catcaattgt gagttcttta tttgatattt tacgtgaaag actattcgtt
     5401 aaagcgattt tctctaaatc tgttgtacgc tcttgtacac gaattaatct tgtacttgtt
     5461 cgatcgttta atgaaaaaat aattgcagtt gaactgacaa aactatatgt attatgaaga
     5521 ccataactat gtgcgatacg gttcattgta tcttcaactc gatatgtttc agcacctgat
     5581 tcaagtaaaa ttctacctgc aattaataca acatcaatca ctttgttttc atctataatt
     5641 gtgattgaat ctggcatatc aattcacctc caatgatatg tgttatttat ttgaacaatt
     5701 gaagtttaca acttgttgtt acaactttca atagtgagac tttgtgttag tatgatgaac
     5761 ttgtatggtt caaatttaaa taagaaaaac tgttaatctt tgctattata ctatgattta
     5821 ataatagcaa aggattaaca gttttgtcgt tgttataaat tgataatagg gttaaacatt
     5881 actttgtttc gcccttgatt tttggctaca tgcaccatat cgtctgcatc tttaaacact
     5941 ttacgctgtg attttggatc gtcatctgtt aaataaccaa caccgataga cactgacaat
     6001 ttaataactt ctttgtttgg taaatggaat gatgattttt caacacccga acgaatattt
     6061 tcagctaatt taacactttg atcaagtgaa taattgtgaa tgacaactga gaactcttcg
     6121 ccaccatttc taaaaatttt aaattgattc ggcacatagt ttttaagtaa ttgagacatt
     6181 tgttttaata cagcatcacc tgatttgtgt gagtaggtat cattgacatc tttaaatcca
     6241 tcgatatcga ttaataataa tgcgatactt tgatgttctt tttcagcttt tcgtgaaatt
     6301 tcatttaaat gtctatcaaa ttcttttaca ttacctaagc ctgttaagta atcatattta
     6361 tcttcgtttt cataacgatt tacgagtgag aagaaatgcc aaatatcgac aaatgttatc
     6421 gctgaagcta aagtgataat taatgaaatt ggtattaaaa tgataacttc cgatagtgtg
     6481 taaataggac tcactaacgc gacaccaaat aaaatgatta ttgtaacaac attaagtatt
     6541 aataatgata gcacatcatt ttgttttaaa aatggtccaa tagcacttgt tactgcagca
     6601 ataacaatca acgtaacacc gtacataatc gagttgttaa atactacaat ttcaacaatt
     6661 gctacaatta ctgtggcaga taatgtatag accatatttg taaatctacc taaaaacaat
     6721 aaaggaacga atgttaagtg aattaaataa tcttcacgat aagggatagg gtagacagat
     6781 aataataatg atacgattgt cattaaaaca gtgacataag ccttagaaaa aaccatacgt
     6841 ttgttttctg aatactgtaa gcgatggaat aaatagattc cagcgactat aacagatata
     6901 ttgtatataa atgcttcgaa catgtctgaa tcgactcctt taattgacca ctagctattg
     6961 taagtgaaaa cttacaattt gtcattagtt tacatataaa attaatgtat gatatagact
     7021 ttgatgttaa aatgttgcct taaatgatat gatgaaaaaa tgaataatag gcgatatata
     7081 agaaatgaat cgtatagttg taaatatgat atcattgatt gaacgaatta atttataata
     7141 aagctataag atatacgtag aaaatagata tatcattcta taaagacaat attaaataaa
     7201 tataacgtta aaaacaatta atatcgatga aggtgaataa atggttacat tattactagt
     7261 tgcagtaaca atgattgtca gtttgacgat aacaccaatt gttattgcaa tatcgaaaag
     7321 attaaattta gttgataaac caaattttag aaaagtacac actaaaccta tttcagttat
     7381 gggtggtaca gtgattctct tttcattttt aataggtatt tggattggtc atcctattga
     7441 aacagaaatc aaaccactta ttattggtgc gattattatg tacgtacttg ggcttgtaga
     7501 tgatatctac gatttgaaac cgtatataaa attggctggt caaattgccg ctgccttagt
     7561 agttgctttt tatggtgtga ctattgattt tatttcgttg ccaatgggta caacgattca
     7621 ttttggattt cttagtattc caattactgt gatttggatt gttgctatta caaatgcaat
     7681 taacttaatt gatggactcg atggtttggc gtcgggtgtt tctgcaatcg gactcattac
     7741 aatagggttc attgcaattt tacaagctaa tattttcata acgatgattt gttgtgtttt
     7801 attaggctct ttaattgggt ttttatttta caatttccat cctgccaaaa tatttttagg
     7861 tgatagtggg gctttaatga ttggatttat catcggattc ctttctttac tcggattcaa
     7921 aaatattaca attattgcat tgttcttccc aattgttatc ttagcagttc cattcattga
     7981 tactttgttc gcaatgattc gacgtgtgaa aaaagggcag catataatgc aagctgataa
     8041 atcgcatttg catcataaac tattagcttt aggctacaca catagacaaa cagtattatt
     8101 aatctattca atctctattt tatttagtct ttcgagcatt attttgtatg tatcgccacc
     8161 attaggtgtt gtattaatgt ttgtattaat catatttagt attgaattaa ttgttgaatt
     8221 tacaggatta atagataaca actaccgacc aatattaaat ttaattagtc gtaagtcatc
     8281 tcataaagag gaatagggaa tgaaagcata gctgtatggg ataatttgta ttatatggct
     8341 ttactcttta caattttttt gtattaaatt tcaaatataa aaagcactgc cataaacgtg
     8401 tacttcaatt gtcgtttaat aatacgcaat tgatatttac cgtcttatga tagtgctttt
     8461 tatttttatt cagttggtat atcgaaaggt aactgctttg gagtttcttc agtcaaatcg
     8521 aaatttcctg cagtcatttg atttaaaaag ttaataaacg cttcatagtc acttttaacg
     8581 acatcgatat agtagcttac cttatcagtg taagtttggt ttcttaacat aaaatgagtt
     8641 gaagctaatt catattcaaa tttaccagtt tgatcataat tcagtgttac tatacatggt
     8701 actgcttctc gtagttcgac acgcccgata tcataaatga cgtctctaac agcaccgcta
     8761 taggcgcgaa ttaaaccgcc accacctaat ttaataccac caaaatatct tgttactacg
     8821 acacacgcat tatgaacatc gagctttttt aatatgtcta acattgggac accggcagtt
     8881 cctgtcggtt caccatcatc attcgctttt tgaatattca tttcaggtcc aatagtatat
     8941 gcagaacaat tatgagtggc atctttatgt tcttttttta ttgcagcaat aaatgcttta
     9001 gcttcatctt cattttgaac aggtttgata tgagcaatga atcttgattt actaatcaca
     9061 ttttcaataa tgtgttcttt tttaacagta atgatatttt gtgtcataat aactccttaa
     9121 ttcataagct taagattatt taatcttcat tatacactga aaatgacatg actataaatc
     9181 gtttgattgc cattttcttt ttaactgaaa tattgtatca ttgctatgag tatattttag
     9241 gaggacgact atgaaaattg ctgtgatgac cgattctaca agttatctgt cgcaggactt
     9301 aatcgataaa tataatattc aaatagcgcc attaagtgtg acttttgatg atgggaagaa
     9361 ctttacagaa agtaatgaaa tagcaattga agaattttat aataaaatgg catcgtctca
     9421 aacgattcca acaacaagcc aaccagcaat tggcgaatgg attactaaat atgaaatgtt
     9481 aagagatcaa ggttacacag atatcattgt catttgctta tcaagtggga ttagtggaag
     9541 ttatcaatct agttatcaag caggggaaat ggttgaaggt gttaatgtac atgcatttga
     9601 tagtaagctt gcagcaatga ttgaaggatg ttatgtatta cgtgctattg aaatggttga
     9661 agaaggatac gagccacagc aaattattga tgatttaact aatatgcgtg aacacacagg
     9721 tgcatattta attgttgatg acttaaagaa tttacaaaaa agtggtcgaa ttactggtgc
     9781 tcaagcatgg gttggaacat tattgaaaat gaagccagtt cttaagtttg aagatggcaa
     9841 gattatacca gaagaaaaag ttcgtactaa aaagcgtgcc attcaaacat tagaaaagaa
     9901 agtattagat attgtaaaag actttgaaga agtaacttta tttgtcataa atggagatca
     9961 tttcgaagat ggtcaagcgt tatacaaaaa gttacaagat gattgtcctt cagcttatca
    10021 agtagcatac tctgagtttg gtccagttgt tgcagcacat ttaggttctg gtggattagg
    10081 tttaggctat gttggcagaa aaataagatt aacataatta taaaatttta ataaaagagt
    10141 ctatattgta attggaaatt atctctcgta tacatggctt taaatgttca tcatttgaaa
    10201 gccaaaatgc taaagatata agaaaatcat tataatatta ggctcttttt tacgttgaaa
    10261 tgaggtttta agcattaaac attacgggaa attaattcat cctcatactt cacttactaa
    10321 tgaaaaaatt aaaaaagaag taacaggtgt catcaaacaa aattcaaact attattgtgt
    10381 tcaatgtgaa agtacaaatc caaagcattt ttatcagtat gattcctcag tacattccaa
    10441 gaaaattgta tattgcagaa attgtatatc actgggtcga atggataatg taacaagata
    10501 taaaataaca gagagttcgc aaagttcatc acaagcatat tatcatctct catttgaatt
    10561 gtcggaacag cagtcttatg cctcagaaca tattgttcga gccattagaa agagacaaac
    10621 gattttgtta tatgccgtaa caggtgcagg taagacagaa atgatgtttc aaggcattca
    10681 atatgcaaga atacagggag ataatatagc tattgtgtca ccacgtgtag atgttgttgt
    10741 agaaattagt aaacgtatta aagacgcatt tcttaatgaa gatatagaca tactacacca
    10801 gcaatcaaga caacaatttg aagggcattt tgttgtatgc acagtgcatc aactttaccg
    10861 attcaaacag cactttgata ctatttttat tgatgaagtc gatgcctttc ctttatcaat
    10921 ggataaaaat ttacaacaag cattgaagtc atcttctaaa gttgaacatg caacaattta
    10981 tatgacagca acaccaccga aacaacttct gtcagagatt ccccacgaaa atataattaa
    11041 attgccagct cgctttcata aaaaatcact tccagttcct aaatatcgtt atttcaaact
    11101 taataataag aagattcaga aaatgttata ccgaatttta caagatcaaa ttaataatca
    11161 acgttataca ctggtgtttt ttaacaatat agaaacaatg attaaaacat tttcggttta
    11221 taagcagaaa attactaaat taacatacgt ccatagcgag gatgtttttc gctttgaaaa
    11281 agttgaacaa ttaaggaatg gacatttcga tgtcattttt actacgacaa tattagaacg
    11341 tggatttaca atggcaaatt tggatgttgt tgttatcgat gcacatcaat atactcaaga
    11401 ggctttaata caaattgctg gacgtgttgg acgaaaatta gaatgtccta ctggaaaagt
    11461 attgtttttt catgaagggg taagtatgaa tatgattcaa gctaaaaaag agattcaaag
    11521 gatgaacaaa ttagcattaa aaagaggttg gattgatgaa taattgtttg agttgtggtg
    11581 ctaagttata tgaaaatata accatttata atttgttcaa gaaacctaat agattatgtg
    11641 acagatgcaa agagaattgg gacaatatta aacttgatat taaagcaagg cgatgttcaa
    11701 ggtgcttaaa acacttaaat caagatgaag cgtattgttt agactgcaag tttctatcgg
    11761 cacactttaa tttaatggaa caattatatt gtcaatttca atatgacggt ttaatgaaag
    11821 agatgataca tcagtataaa tttttgaaag actattattt atgtgaatta ttggcacatt
    11881 tgattgaaat accacaaaca tcttatgact atattgtgcc aattccttct tcgccggcac
    11941 atgatttatc tagaacattt aacccggtag aagcagtact aaaagctaaa gggattcgct
    12001 ttgataagat tttaaagatg tcaaatagac caaaacagtc tcatttaact aagaaagagc
    12061 gtctggcaga tgaaaatcca tttattattg atacggaatt agatttaaat ggtaaggaaa
    12121 tattactcgt tgacgatatt tatacaactg gattaacaat tcatcgtgca gggtgtaaat
    12181 tatatgctaa aaatatcaga aaattcaaag tgtttgcgtt tgcacgatag cgtaaaaatg
    12241 ttaaaatata ataaagagtt accaataaag aggtttaagg agagattact atgattagat
    12301 ttgaaattca tggagataac ctcactatca cagatgctat tcgcaactat attgaggaaa
    12361 aaattggtaa gttggaacgt tattttaatg acgtaccaaa tgcagtggcg catgttaaag
    12421 ttaaaactta ttcaaattca gctactaaaa ttgaagtaac aattccattg aaaaatgtta
    12481 cgttaagagc tgaagagcga aacgatgatt tatacgcagg tattgattta attaataata
    12541 aacttgaaag acaagttcga aaatataaaa cacgtattaa tcgtaagagc cgtgatcgag
    12601 gagatcaaga agtgtttgtt gccgaattac aagaaatgca agaaacacaa gttgataatg
    12661 acgcttacga tgataacgag atagaaatta ttcgttcaaa agaattcagc ttaaaaccaa
    12721 tggattcaga agaagcggta ttacaaatga atctattagg tcatgacttc tttgtattca
    12781 cagacagaga aactgatgga acaagtatcg tttaccgccg taaagacggt aaatatggct
    12841 tgattcaaac tagtgaacaa taaattaagt ttaaagcact tgtgtttttg cacaagtgct
    12901 tttttatact ccaaaagcaa attatgacta tttcatagtt cgataatgta atttgttgaa
    12961 tgaaacatag tgactatgct aatgttaatg gatgtatata tttgaatgtt aagttaataa
    13021 tagtatgtca gtctattgta tagtccgagt cgaaaatcgt aaaatattta taatataatt
    13081 tattaggaag tataattgcg tattgagaat atatttatta gtgataaact tgttgacaac
    13141 agaatgtgaa tgaagtatgt cataaatata tttatattga ttctacaaat gagtaaataa
    13201 gtataatttt ctaactataa atgataagat atattgttgt aggccaaaca gttttttagc
    13261 taaaggagcg aacgaaatgg gatttttatc aaaaattctt gatggcaata ataaagaaat
    13321 taaacagtta ggtaaacttg ctgataaagt aatcgcttta gaagaaaaaa cggcaatttt
    13381 aactgatgaa gaaattcgta ataaaacgaa acaattccaa acagaattag ctgacattga
    13441 taatgtcaaa aagcaaaatg attatttaga taaaatttta ccagaagcat atgcacttgt
    13501 tagagaaggc tctaaacgtg tattcaatat gacaccatat aaagttcaaa ttatgggtgg
    13561 tattgcaatt cataaaggtg atatcgctga gatgagaaca ggtgaaggta aaacattaac
    13621 agcgacaatg ccaacatact taaatgcatt agctggtaga ggtgttcacg ttattacagt
    13681 caatgaatac ttatcaagtg ttcaaagtga agaaatggct gagttatata acttcttagg
    13741 tttgactgtc ggattaaact taaacagtaa gacgacagaa gaaaaacgtg aagcatacgc
    13801 acaagacatt acttacagta ctaataatga gctaggtttt gattacttac gagataacat
    13861 ggtgaattat tctgaagata gagtaatgcg tccattacat tttgcaatca ttgatgaggt
    13921 tgactcaatt ttaatcgacg aggcacgtac gccattaatt atttctggtg aagctgaaaa
    13981 gtcaacgtca ctttatacac aagcaaatgt ttttgcgaaa atgttaaaac aggacgaaga
    14041 ttataaatac gatgaaaaaa cgaaagctgt acatttaaca gaacaaggtg cggataaagc
    14101 tgaacgtatg ttcaaagttg aaaacttata tgatgtacaa aatgttgatg ttattagtca
    14161 tatcaacaca gctttacgtg cgcacgttac attacaacgt gacgtagact atatggttgt
    14221 tgatggcgaa gtattaattg tcgatcaatt tacaggacgt acaatgccag gccgtcgttt
    14281 ctcggaaggt ttacaccaag ctattgaagc gaaggaaggc gttcaaattc aaaatgaatc
    14341 taaaactatg gcgtctatta cattccaaaa ctatttcaga atgtacaata aacttgcggg
    14401 tatgacaggt acagctaaaa ctgaagaaga agaatttaga aatatttata acatgacagt
    14461 aactcaaatt ccgacaaata aacctgtgca acgtaacgat aagtctgatt taatttacat
    14521 tagccaaaaa ggtaaatttg atgcagtagt agaagatgtt gttgaaaaac acaaggcagg
    14581 gcaaccagtg ctattaggta ctgttgcagt tgagacttct gaatatattt caaatttact
    14641 taaaaaacgt ggtatccgtc atgatgtgtt aaatgcgaaa aatcatgaac gtgaagctga
    14701 aattgttgca ggcgctggac aaaaaggtgc cgttactatt gccactaaca tggctggtcg
    14761 tggtacagat atcaaattag gtgaaggcgt agaggaatta ggcggtttag cagtaatagg
    14821 tacagagcga catgaatctc gtcgtattga tgaccagtta cgtggtcgtt ctggacgtca
    14881 aggtgataaa ggggatagtc gcttctattt atcattacaa gatgaattaa tgattcgttt
    14941 tggttctgaa cgtttacaga aaatgatgag ccgactaggt ttagatgact ctacaccaat
    15001 tgaatcaaaa atggtatcaa gagctgtaga atcagcacaa aaacgtgtag aaggtaataa
    15061 cttcgacgcg cgtaaacgta tcttagaata cgatgaagta ttacgtaaac aacgtgaaat
    15121 tatctataac gaaagaaata gtattattga tgaagaagac agctctcaag ttgtagatgc
    15181 aatgctacgt tcaacgttac aacgtagtat caattactat attaatacag cagatgacga
    15241 gcctgaatat caaccattca tcgactacat taatgacatc ttcttacaag aaggtgacat
    15301 tacagaggat gatatcaaag gtaaagatgc tgaagatatt ttcgaagtcg tttgggctaa
    15361 gattgaagca gcatatcaaa gtcaaaaaga tatcttagaa gaacaaatga atgagtttga
    15421 gcgtatgatt ttacttcgtt ctattgatag ccattggact gatcatatcg acacaatgga
    15481 tcaattacgt caaggtattc acttacgttc ttatgcacaa caaaatccat tacgtgacta
    15541 tcaaaatgaa ggtcatgaat tatttgatat catgatgcaa aatattgaag aagatacttg
    15601 taaattcatt ttaaaatctg tagtacaagt tgaagataat attgaacgtg aaaaaacaac
    15661 agagtttggt gaagcgaagc acgtttcagc tgaagatggt aaagaaaaag tgaaaccgaa
    15721 accaatcgtt aaaggcgatc aagttggtcg taacgatgat tgtccatgtg gtagtggtaa
    15781 aaaattcaaa aattgccatg gaaaataaat gatataaaat aactccttcc aattaaacac
    15841 ctatagtttg tgttatggga ggagtctttt tattttacaa gcgttaaata ctttaaaaaa
    15901 tgtgaagaag ttgttaaacg ttgttatgta cttagtttta aaaaatcggt ttaggcatat
    15961 gtcgatgata aatgtactga tttttaacaa taaatgcata aactaattgt cagtgtgctt
    16021 atatttctta acattgttat ttaacaaaat tatgttaaaa tttagcatta taaaagatgc
    16081 aaatcaatga cttgaattga aatataaata ggagcgaatg ctatggaatt atcagaaatc
    16141 aaacgaaata tagataagta taatcaagat ttaacacaaa ttagggggtc tctttgactt
    16201 agagaacaaa gaaactaata ttcaagaata tgaagaaatg atggcagaac ctaatttttg
    16261 ggataaccaa acgaaagcgc aagatattat agataaaaat aatgcgttaa aagcaatagt
    16321 taatggttat aaaacactac aagcagaagt agatgacatg gatgctactt gggatttatt
    16381 acaagaagaa tttgatgaag aaatgaaaga agacttagag caagaggtca ttaattttaa
    16441 ggctaaagtg gatgaatacg aattgcaatt attattagat gggcctcacg atgccaataa
    16501 cgcaattcta gagttacatc ctggtgcagg tggcacggag tctcaagatt gggctaatat
    16561 gctatttaga atgtatcaac gttattgtga gaagaaaggc tttaaagttg aaactgttga
    16621 ttatctacct ggggatgaag cggggattaa aagtgtaaca ttgctcatca aagggcataa
    16681 tgcttatggt tatttaaaag ctgaaaaagg tgtacaccga ctagtacgaa tttctccatt
    16741 tgattcatca ggacgtcgtc atacatcatt tgcatcatgc gacgttattc cagattttaa
    16801 taatgatgaa atagagattg aaatcaatcc ggatgatatt acagttgata cattcagagc
    16861 ttctggtgca ggtggtcagc atattaacaa aactgaatcg gcaatacgaa ttacccacca
    16921 cccctcaggt atagttgtta ataaccaaaa tgaacgttct caaattaaaa accgtgaagc
    16981 agctatgaaa atgttaaagt ctaaattata tcaattaaaa ttggaagagc aggcacgtga
    17041 aatggctgaa attcgtggcg aacaaaaaga aatcggctgg ggaagccaaa ttagatcata
    17101 tgttttccat ccatactcaa tggtgaaaga tcatcgtacg aacgaagaaa caggtaaggt
    17161 tgatgcagtg atggatggag acattggacc atttatcgaa tcatatttaa gacagacaat
    17221 gtcgcacgat taatatatat tttaaaaccg aggctctaaa agggcgtcgg tttttggttt
    17281 ttttaaaggt agctaaataa attgtaaatt agattttgga atatgatttg tttatgaata
    17341 tttaagtaca attcggtaga tagagttaga atatattttt taaaagttgt gtttgttaaa
    17401 acaacatatg cagtgtgcat ttagtaatat tacctatggc gattttcaag gtattgaatt
    17461 aattattgaa aacgttctca attacatggt atgaatacat tttacactat gataaaaggt
    17521 tgtattcttt ttatattgtt aaccatttga ttacatcgtt ataacaatag cttttgacaa
    17581 aatgtattgt gctatagtat ttgcatactt aaaatactaa cagcaaagga atgacagcaa
    17641 gatgaaaaaa tctcttacag tgacggtttc gtcagtgtta gcttttttag ctttaaataa
    17701 tgcagcacat gcacaacaac atggcacaca agtaaaaaca cctgttcaac ataattatgt
    17761 atcaaatgtt caagcacaaa cgcaatcacc gacaacttat acagtagttg ctggcgattc
    17821 attatataag attgctttag agcatcactt aacgttgaat caattatatt catacaatcc
    17881 tggtgtaaca cctttaattt ttcctggtga cgtgatttca cttgtgcctc aaaataaagt
    17941 gaaacaaact aaagcggtta aatcaccagt aagaaaagca agccaagcta aaaaggtagt
    18001 aaaacaacct gtacaacaag catctaaaaa agtagtagtt aagcaagcac ctaagcaagc
    18061 agtaactaag acagttaatg tagcatacaa acctgctcaa gtacaaaaat cagtaccaac
    18121 tgtacctgtt gcacataact acaataaatc agttgctaac agaggaaact tatatgctta
    18181 tggaaactgc acatattatg ctttcgatcg tcgtgcacaa ttaggtagaa gtataggaag
    18241 tttatggggc aatgcaaata actggaatta cgcagcaaaa gttgcaggat ttaaagtaga
    18301 taaaacacca gaagttggcg ctattttcca aacagctgct ggtccatatg gacatgttgg
    18361 tgttgttgaa tctgtaaacc ctaatggaac aattactgtt tctgaaatga actatgctgg
    18421 atttaatgtt aaatcttcaa gaacaatttt aaatccagga aaatataatt acatccacta
    18481 agtaatatat caagacaaga ctatcctctt agcctgttta agtaacaggt tgagaggatt
    18541 ttttggtatc atttaatcag agttatataa agaagatatt taaatgatat ttaattgatt
    18601 gatatgtaaa aagaaagtat aatttatgat taattaatgg aggaggtaat tgaaatgggt
    18661 gtacatcaat attttaaaag attatcagat atggaaagac ttataagatt acctggaaaa
    18721 tttaaatatt ttgaacacaa tgttgcagca cactccttta aagtaactaa aattgcacaa
    18781 tatctagcaa cagttgaaga atatcatgga cgaaagatta attggaaaag cttatatgaa
    18841 aaagcattaa atcatgattt cgccgaagtg tttactggtg atataaaaac acctgttaaa
    18901 tatgcgagta gtgaattaaa aaaattattt tcgcaagttg aagaagaaat ggtagagacc
    18961 tttattgaag aagaaattcc attacaatat agagatgttt ataagcaacg actgcaagaa
    19021 ggtaaagatg attcattaga aggccaaata ctttcagttg ctgataaaat tgatttgctt
    19081 tatgaaacat ttggagaaat acaaaaacgt aatcccgaag aattattttt cgaaatttat
    19141 gaaatgagtc tagaaacaat tattcaattt gaccatttag catctgtaca agattttatt
    19201 aataatatca ttccagaaat gttgactgaa aactttatac ctagaacaga attaagagaa
    19261 acaaccatga acattttaaa taaaagaaaa gaggaaaatg aatgatatgg tattttagcg
    19321 cagcattctt tccatgtgtc ttggtagtat tatttagtgt aataacaaga agtaaatggg
    19381 tcggtactat tctgacatta attttaattg gtgcctcaat ctataaagag tatttccata
    19441 acgagtggat tatttttatt gatgtagtgt cattattagc tggttattta attatagatc
    19501 aactcgaatt tcataaacat caagatgaag atcgctaaga ttaactttaa aataatgttt
    19561 caaacaaatt tgttgaaaca aaatgatgat taatataatg tgtatttaca tactaaaaat
    19621 aacaagataa acgatttgat ttaaggcaag catagttagc acaactatgt ttgtttttct
    19681 ttgttcgaca tttttacgaa caaacgtttg ctttttgtgt gactactttg ctaaaatatg
    19741 taatgagaaa gcaaagagtt gagcggaaat ataaataata cgttgaaaga ggaggcatat
    19801 gtgacaatgg ttgaacatta tccttttaaa atacattctg attttgagcc tcaaggtgac
    19861 caaccgcaag caattaaaga aatcgtggaa ggtattaaag cggggaaaag acatcaaact
    19921 ttattaggtg ctactggcac agggaaaaca tttacgatga gtaatgttat taaagaagtt
    19981 gggaaaccaa cgttaattat cgcgcataac aaaacattag caggacaatt atatagtgag
    20041 tttaaagaat tttttcctga aaacagggtg gaatactttg taagttacta tgattattat
    20101 caaccagagg catacgtacc gtctactgac acttttattg aaaaagatgc ctcaatcaat
    20161 gatgaaattg atcaactacg acattctgct acaagtgcat tatttgaacg cgatgatgta
    20221 attattattg ctagtgtaag ttgtatatat ggtttaggta atcctgaaga atataaagat
    20281 ttagtagtaa gtgttcgagt tggtatggaa atggatagaa gtgaattact tagaaaactt
    20341 gtagatgtgc aatatacacg aaatgacatc gatttccaac gaggaacgtt tcgagtgcgt
    20401 ggtgatgtag tggaaatatt cccagcctct aaagaagaac tttgtataag ggttgagttt
    20461 ttcggcgatg agattgaccg tatccgagaa gttaactacc taacaggtga agtgttgaaa
    20521 gaaagagaac attttgcgat attcccagct tctcacttcg taacacgtga agaaaagttg
    20581 aaagttgcga ttgaacgtat tgaaaaagaa ttggaagaac gattgaaaga attacgagat
    20641 gagaataaat tactagaagc gcaaaggtta gaacagcgta ccaactatga tttagaaatg
    20701 atgcgagaga tgggattctg ttcaggaatt gaaaactatt ccgtacattt aactttgcga
    20761 ccactgggtt cgacaccata tactttattg gattactttg gcgatgattg gttagtaatg
    20821 attgatgaat cacatgtgac attaccgcaa gttcgaggca tgtataacgg agacagagcg
    20881 cgtaaacaag ttttggtgga tcatgggttt agattaccga gtgcattaga taaccgtcca
    20941 cttaaatttg aagaatttga agaaaagaca aaacaacttg tgtatgtatc tgcaacgcct
    21001 ggaccatacg aaattgaaca tacggataag atggttgaac aaattattcg tcctactggt
    21061 ttactggatc ctaagattga ggttagacct actgaaaatc aaattgacga tttattaagt
    21121 gaaattcaaa caagagttga gcgtaatgaa cgcgtacttg ttacaacgct cactaaaaag
    21181 atgagtgaag atttaaccac atacatgaaa gaagcgggta ttaaagttaa ttatctgcat
    21241 tcagaaatca agacattaga acgaattgaa ataattagag acttacgaat gggtacatat
    21301 gatgttatcg taggtattaa tttattaaga gagggtattg atataccaga agtttctcta
    21361 gttgtcatat tagatgcaga taaagaaggg tttttacgtt ctaaccgctc attaattcaa
    21421 acaataggta gagctgcgcg taacgataaa ggtgaagtca ttatgtatgc cgataaaatg
    21481 actgattcga tgaagtatgc aattgatgag acacaacgtc gtcgagaaat acagatgaaa
    21541 cataatgaaa aacatggtat tacacctaaa acaattaata aaaaaataca tgatttaatt
    21601 agtgctactg ttgaaaatga cgaaaataat gacaaagcac aaactgtgat acctaagaag
    21661 atgacgaaaa aagaacgtca aaagacaatc gacaatatag aaaaagaaat gaaacaagca
    21721 gcgaaagatt tagatttcga gaaagctaca gaattaagag atatgttatt tgaattaaaa
    21781 gcagaagggt gacaagtaaa tgaaagaacc atccatagta gtaaaaggtg ctcgtgcgca
    21841 taacttgaaa gatattgata tcgaactacc taaaaataaa ttaattgtta tgacaggttt
    21901 atctgggtca ggtaaatcgt cattagcatt cgatactata tatgctgaag gacaacgacg
    21961 ttatgttgaa tcattaagtg cctatgcgcg tcaattttta ggccaaatgg acaaaccaga
    22021 tgttgataca attgaaggat tatcgccagc aatttcaata gatcaaaaaa caacaagtaa
    22081 aaatccaaga tcaactgtag caacagtaac agaaatatat gattatatac gtttgttata
    22141 tgcacgtgtt ggtaaacctt actgtccaaa tcacaatata gaaattgaat cgcaaacagt
    22201 acaacaaatg gttgaccgca ttatggaatt agaggcacgt acaaagattc aattattagc
    22261 acctgtcatc gctcatcgta aaggtagtca tgaaaagcta atcgaagata ttggtaaaaa
    22321 aggttatgta cgtttaagaa tcgatggcga aattgttgat gtaaatgatg tacctacttt
    22381 agataagaac aagaatcata caatagaagt tgttgtagac cgattagttg ttaaagatgg
    22441 aattgaaaca cgactagctg actctataga aactgcctta gagctttcag aaggacaatt
    22501 aacagtcgat gtcattgacg gggaagacct taagttttca gaaagccatg cttgtcctat
    22561 atgtggattt tcaatcggag agttagaacc aagaatgttt agctttaaca gtccttttgg
    22621 tgcttgtccg acatgtgatg gcttaggcca aaagttaaca gtcgatgtag acttggttgt
    22681 tcccgacaaa gataagacgc taaacgaagg tgcaatagaa ccttggatac cgacgagttc
    22741 tgatttttat ccaacattgt taaaacgtgt ttgtgaagtt tataaaatca atatggataa
    22801 accttttaaa aagttaacag aacgtcaacg tgatatttta ttgtatggtt ctggtgacaa
    22861 agaaattgaa tttacattta cacaacgtca aggtggtact agaaaacgaa caatggtttt
    22921 cgagggtgta gttcctaata taagtagacg attccatgaa tctccttcag aatatacacg
    22981 tgaaatgatg agtaaatata tgactgaact accttgcgaa acttgtcatg gaaagcgatt
    23041 gagtcgtgaa gcgttatctg tttatgtagg tggtttaaat attggtgaag tagtcgaata
    23101 ttcaatcagt caagcgctga actattataa aaacattgat ttgtcagaac atgatcaagc
    23161 gattgcaaat caaatattga aagaaattat ttcccgactc acttttttaa ataatgtggg
    23221 acttgaatat ttaacgttaa acagagcttc aggtacactt tcaggtggtg aagcacaacg
    23281 tattcgatta gcaacgcaaa ttgggtcgcg tttgactggt gtcttatatg tattagatga
    23341 gccatcaatt ggactgcatc aaagagataa tgatcgatta attaatacac ttaaagaaat
    23401 gagagattta ggaaatactt taattgtagt tgaacacgat gatgatacaa tgcgtgcggc
    23461 tgattactta gtggatatag gtcctggtgc tggtgaacat ggagggcaga ttgtgtctag
    23521 tggtactcct caaaaggtaa tgaaagataa aaaatcatta acaggacaat acttgagtgg
    23581 taagaaacgt attgaagtac ctgaatatcg cagaccggct tcagatcgta aaatttctat
    23641 acgtggagct agaagcaaca atcttaaagg ggttgatgtg gacataccac tatcaatcat
    23701 gacggttgtt acaggtgtat caggttctgg taaaagctca ttagtaaatg aagtattata
    23761 caaatcatta gctcaaaaaa ttaataaatc taaagtaaag ccaggattgt acgataagat
    23821 tgaaggtatt gatcaacttg ataaaattat tgatattgat caatcaccaa taggtagaac
    23881 gccacgctct aatccagcaa catatactgg tgtgtttgat gatatacgtg atgtgtttgc
    23941 gcaaacaaat gaagctaaaa ttcgaggata tcaaaaaggg cgttttagtt ttaatgtaaa
    24001 aggtggacgc tgtgaagctt gtaaaggtga cggtattatt aaaattgaaa tgcatttttt
    24061 acctgatgtt tatgttcctt gtgaagtgtg tgatggtaaa cgatataatc gtgagacact
    24121 agaggttact tacaaaggta aaaatattgc tgacatttta gaaatgactg ttgaagaagc
    24181 aacacaattt tttgaaaata ttcctaagat taagcgcaag ttacaaacac tagttgatgt
    24241 tggtcttgga tacgtcacat taggtcaaca agctacaacg ttatcaggtg gtgaggctca
    24301 acgtgtgaaa cttgcatctg aacttcataa acgttcaact ggtaaatcta tttatatcct
    24361 agatgaaccg acaacagggt tacatgttga cgatattagt agattattaa aagtattaaa
    24421 ccgattagtt gaaaatggtg atactgttgt aattattgaa cataacctag atgttatcaa
    24481 aacagcagac tatattatag acttaggtcc tgaaggtggt agtggcggtg gtactattgt
    24541 tgcgactggc acacccgaag atattgctca gacaaagtca tcatatacag gaaagtattt
    24601 aaaagaagta cttgaacgag ataaacaaaa tactgaagat aaataagatt aaaagaagtg
    24661 aaggatgtta taaatttatc cttcgcttct ttttattaat ttagtaatga atagtagaaa
    24721 gaaaagatgc gtaaaaagaa ttatgttaag atagggtcaa tctagagtag ttaaacataa
    24781 atcgaactgg gagtgggaca gaaatgataa agaatcacta atgatttatt atgtagtggt
    24841 tctttgtcat tagccacagc tattgtgtac ttaaaaatag gaatgcatga gtgcaactca
    24901 tgcataagaa atactaattt ctaaagaaaa agtatttctt tatgttgggg ccccgccaac
    24961 ttgcattgtt tgtagaattt cttttcgaaa ttctttatgt tggggccccg ccaacttgca
    25021 ttgtttgtag aatttctttt cgaaattctt tatgttgggg ccccgccaac taattccaat
    25081 atatcattgt agagcttagg tcattgattt ttggctcgga cttttatggc gatatgaacc
    25141 atgtaaatta agcaagcaat aaattaatga ttgatattga cttgtaaaat aataacaata
    25201 atgaacaatt aatatttatt ttagcttttc aatgtagatt ggtgttatat ttttgatatg
    25261 ataagaagag atgtaagagt agggataaat acaattgagg tgaacccatg ttaacgacag
    25321 aaaaactagt tgaaacatta aagttagatt taatcgctgg tgaagaagga ctatcgaagc
    25381 caattaaaaa tgctgatata tcaagaccgg gcttagagat ggcaggttat ttttcacatt
    25441 atgcgtcaga tagaatacaa ctattaggaa caacggaact atcgttttac aatttattac
    25501 cagataagga tcgcgcaggt cgtatgcgta aactatgcag accagaaacg cctgcaatta
    25561 ttgtgacacg tggattgcag ccaccagaag aattagttga agctgcaaaa gaattaaata
    25621 ccccacttat agttgctaaa gatgcgacta caagtttaat gagtcgctta acaacgtttt
    25681 tagagcatgc acttgcaaag acgacatctt tacatggtgt tttagtagat gtttacggtg
    25741 ttggtgtact aattaccggt gattcaggaa taggtaaaag tgagactgcg ttggaattag
    25801 ttaaacgtgg gcatagatta gtagcagatg ataatgtaga aatacgtcaa attaataaag
    25861 atgaactaat agggaaacca ccaaagttaa tagaacatct attagaaata cgtggactag
    25921 gtattatcaa tgttatgact ttatttggcg cgggttcaat attaactgaa aaacgaatta
    25981 gattaaatat taatttggaa aactggaaca agcaaaagtt atatgaccgc gtaggtctta
    26041 atgaagagac gctaagtatt ttagatactg aaatcactaa aaaaacaata cctgtaagac
    26101 ctggtagaaa tgttgcggta attattgagg tcgctgcaat gaactatcga ttaaatatca
    26161 tgggcattaa cacggccgaa gaatttagtg aaagattaaa tgaagaaatt atcaagaaca
    26221 gtcataagag tgaggagtag gttgaatggg tattgtattt aactatatag atcctgtggc
    26281 atttaactta ggaccactga gtgtacgatg gtatggaatt atcattgctg tcggaatatt
    26341 acttggttac tttgttgcac aacgtgcact agttaaagca ggattacata aagatacttt
    26401 agtagatatt attttttata gtgcactatt tggatttatc gcggcacgaa tctattttgt
    26461 gattttccaa tggccatatt acgcggaaaa tccaagtgaa attattaaaa tatggcatgg
    26521 tggaatagca atacatggtg gtttaatagg tggctttatt gctggtgtta ttgtatgtaa
    26581 agtgaaaaat ttaaacccat ttcaaattgg tgatatcgtt gcgccaagta taattttagc
    26641 gcaaggaatt ggacgctggg gtaactttat gaatcacgag gcacatggtg gatcggtgtc
    26701 acgcgctttt ttagaacaat tacatttgcc taattttata atagaaaata tgtatattaa
    26761 cggccaatat tatcatccaa cattcttata tgaatccatt tgggatgtcg ctggatttat
    26821 tatcttagtt aatattcgta aacatttaaa attaggagaa acattctttt tatatttaac
    26881 ttggtattca attggtcgat tctttataga aggattacgt acagatagct taatgctcac
    26941 aagtaatatt agagttgcac aattagtatc aattctttta attttaataa gtataagttt
    27001 aattgtatat agaaggatta agtataatcc accgttgtat agcaaagttg gggcgcttcc
    27061 atggccaaca aaaaaagtga agtagtgata gtttgaggaa atttttatca aaaacacatc
    27121 atcatacaaa ccctttatgg cgtgtatacc gtcttgttaa attttcgaaa gtttttaaga
    27181 atgtaattat cattgaattt tcgaaattta ttccaagtat ggtactgaaa agacatatat
    27241 ataaacaact tttaaatatt aatatcggta atcaatcgtc gatagcttat aaagtaatgt
    27301 tagatatttt ttacccagaa ctgattacga ttggtagtaa cagtgttatt ggttacaatg
    27361 taacaatttt gacgcatgaa gcattagttg atgaatttcg ttatggacca gtgacgatag
    27421 gatctaacac tttgattggt gcaaatgcta ccattttacc cggtataacg attggtgaca
    27481 atgtaaaagt tgcagctggt acggttgttt caaaagatat accggataat ggatttgcat
    27541 atggcaaccc tatgtatata aaaatgatta ggaggtgaca attttatggc gcaaaagaat
    27601 aataatgtaa ttccaatgac ttttgatgat gcattttatc gtaaaatggc taaacagaag
    27661 tttaaacaaa gagaatataa acgagctgct gaatactttg aaaaagtgtt agaattgtca
    27721 cctgatgata tggaaattca aattgattat gcacaatgtc tagtgcaact tggtattgct
    27781 aaaaaagcag aacatttatt ttatgacaat attatttata ataggcatct agaagatagc
    27841 ttttatgaat tgagtcagct caacattgaa gttaacgaac caaacaaggc attcttgttt
    27901 ggtattaatt atgttattgt tagcgacgac caagattata gagatgaatt agatcaaatg
    27961 tttgatgtga aatatcaaag tgaagaacaa attgaacttg aagctcaatt gtttgtagtt
    28021 caaatactat tccaatatct tttttctcaa ggtcgattaa aagatgcaaa gaattatgtc
    28081 ttacatcaac cacaagaagt tcaagatcat cgtgtagtac gtaatttatt ggcaatgtgt
    28141 tatttatatc tcggtgaata tgatacggct aaagcattgt acgaagcact attacaagag
    28201 gatagtacag atatatatgc attatgccat tatactttgc tactttataa cactaaggaa
    28261 aatgaacaat atcaaaaata tttaaaaata ttaaacaaag ttgtacctat gaatgacgat
    28321 gaaagtttta aattaggtat tgtattaagt tatttaaagc agtatcgtgc atcacaacaa
    28381 ttgttgtacc ctttatataa aaaagggaaa tttttatcaa ttcaaatgta caatgcttta
    28441 gcatataatt attattattt aggtgaagaa gacgaaagtc attactactg ggataaattg
    28501 aagcaaattt ctaaagtgga aattggacat gcgccttggg taattgaaaa tagcaaagaa
    28561 gtttttgacc aacatatttt gccattactt caaagtgatg acagtcatta tcgtttatat
    28621 ggtatttttt tattggatca attaaatggt aaagaaattg tgatgacgga aagtatttgg
    28681 caggttttgg aaaatctaaa taattatgag aaattgtatt taacgtattt agttcaaggt
    28741 ttaacgctca ataaattaga cttcattcat cgcggcttat taacgcttta ccataatgaa
    28801 ttatttgtaa gtgaaaatga tgtaatggtt gcatggatta atcaaggtga actcataatt
    28861 gctgaaaaag tagatttaac tgatgttgag ccatatatcg gtgcgtttat ttatttgtat
    28921 tttaaaaatc aacctcgaaa cgttacaaag aagcaaatta caacatggtt aggcataaca
    28981 caatataaac tgaacaaaat gattgaattt ctcttgagca tatagattta tgaaaagtta
    29041 gatttattat ataatgcgca taatgattaa taatgaggag gcgttaataa aatgactgaa
    29101 atagattttg atatagcaat tatcggtgca ggtccagctg gtatgactgc tgcagtatac
    29161 gcatcacgtg ctaatttaaa aacagttatg attgaaagag gtattccagg cggtcaaatg
    29221 gctaatacag aagaagtaga gaacttccct ggtttcgaaa tgattacagg tccagattta
    29281 tctacaaaaa tgtttgaaca cgctaaaaag tttggtgcag tttatcaata tggagatatt
    29341 aaatctgtag aagataaagg cgaatataaa gtgattaact ttggtaataa agaattaaca
    29401 gcgaaagcgg ttattattgc tacaggtgca gaatacaaga aaattggtgt tccgggtgaa
    29461 caagaacttg gtggacgcgg tgtaagttat tgtgcagtat gtgatggtgc attctttaaa
    29521 aataaacgcc tattcgttat cggtggtggt gattcagcag tagaagaggg aacattctta
    29581 actaaatttg ctgacaaagt aacaatcgtt caccgtcgtg atgagttacg tgcacagcgt
    29641 attttacaag atagagcatt caaaaatgat aaaatcgact ttatttggag tcatactttg
    29701 aaatcaatta atgaaaaaga cggcaaagtg ggttctgtga cattaacgtc tacaaaagat
    29761 ggttcagaag aaacacacga ggctgatggt gtattcatct atattggtat gaaaccatta
    29821 acagcgccat ttaaagactt aggtattaca aatgatgttg gttatattgt aacaaaagat
    29881 gatatgacaa catcagtacc aggtattttt gcagcaggag atgttcgcga caaaggttta
    29941 cgccaaattg tcactgctac tggcgatggt agtattgcag cgcaaagtgc agcggaatat
    30001 attgaacatt taaacgatca agcttaattc gaagtcgaat taagatgttg agctgtaaat
    30061 tatttggata tttattttaa tagtgtcatc acagcgttaa aataatgtct tacttttaaa
    30121 ttaaagcaaa ttatatagaa aactagaact tagtacgtat catttgtgcg tttcaatgag
    30181 ttctagtttt tttatatgtt atattaaact tataactt
//
LOCUS       DAMQWL010000021        29248 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.021, whole genome shotgun sequence.
ACCESSION   DAMQWL010000021 DAMQWL010000000
VERSION     DAMQWL010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 29248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29248
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.021"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            120..1019
                     /locus_tag="PF788_000850"
     CDS             120..1019
                     /locus_tag="PF788_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303124.1"
                     /translation="MGLVIEHVTKRFGKMTAVNDISLKLESGKMLGFLGRNGAGKTTT
                     FRMILGLSEPTEGHITYNGKKLDKTMYNRIGYLPEERGLHGKLTVEEELKYLATLKGM
                     SKTEIQQQISYWLERFDITENRKKRIDSLSKGNQQKIQLLASMLHKPELLILDEPFSG
                     LDPVNVELLKEAVKDLNDWGSTIVYSSHRMEHVEELCDDVCILDKGQLVVSGDINHVR
                     ASNGNKKVVIESETTLPDLTNIRGIIHSENMKQGLQLTIENEDVAKDIYQVVAHQGYV
                     KRFQVVEPSLQDIFIEKVGGKDA"
     gene            1012..2244
                     /locus_tag="PF788_000851"
     CDS             1012..2244
                     /locus_tag="PF788_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303125.1"
                     /translation="MHKFWATFTLTYIKKIKAKSFVIFMIIIAALMIGLSNIDKIINM
                     FDDGPDKIGVAAPNEQIYKVFKQQANTFHSDAKFTKVSIEDAEKEVKKHKLDKAYIIK
                     VNQNRTLQGTIISEKRVSHEDSQKVQALLTAIQTNMVAGELNINKEDLQKLQAQSKVD
                     NKVISNDEVDKVSEGQKIFNYALAYGIIFLMFFIVLNYASQIAMEIASEKTSRVIEMI
                     ITSISPIQHIFAKILGVIAVAVTQIILIVLMAVICIFAFDLKDLLQGFNVEMNQLSWQ
                     IIIVGIISSIVGITAYVLLAAILGSLTSRIEDLNQSLMPLTLLGMIAFYIAIFTINNP
                     DGQLALITSYIPFLAPFQLVVRAQTSGLQIYEVILSSLISIVMVAVLIWIAIKTYKDS
                     VLTFERGLFNSMKRVFKK"
     gene            2228..2413
                     /locus_tag="PF788_000852"
     CDS             2228..2413
                     /locus_tag="PF788_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303126.1"
                     /translation="MYLKNKIDESDTHLSYKMMMKACYSYFFIFSYRIMSKKVYNMNV
                     KTNFLKWECEVRRNVNK"
     gene            2462..2788
                     /locus_tag="PF788_000853"
     CDS             2462..2788
                     /locus_tag="PF788_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfA family protein"
                     /protein_id="HDG6303127.1"
                     /translation="MLYPIFIFILAGLCEIGGGYLIWLWLREGQSSLVGLIGGAILML
                     YGVIATFQSFPSFGRVYAAYGGVFIIMSLIFAMVVDKQMPDKYDVIGAIICIVGVLVM
                     LLPSRA"
     gene            2818..3837
                     /locus_tag="PF788_000854"
     CDS             2818..3837
                     /locus_tag="PF788_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HDG6303128.1"
                     /translation="MIVEVEHQRQGVDLIKIDNDETKIIFTNYGARVVSWKYHDNNIV
                     LGNVVEADEFYHSNPFKFGASIGRYSGRIDNAKFKLKGKEYQLEKNNGEHHLHGGCHG
                     LDNKLFDYEIRNEIAQIKVIFKTVLKSADDHFPGDIDVTITHIYDADHQWSIEYEAVA
                     SEDTLFSPTNHVYFNLNRDNNVVDNHRISSNQLDMYVLDERNIVTGDILDLHEVFEDN
                     KIKLSDIFTSQHAQLSQQMTRFGGLDHPFTVGEHKMYVENHEFMLEVDTDMPHVVFFT
                     FNQPDEWDSPFNIYKPHSGFTLETQFLPNDINLYGEKAPSILKAGEVFNSKTSFRIEE
                     KVEND"
     gene            complement(4073..4726)
                     /locus_tag="PF788_000855"
     CDS             complement(4073..4726)
                     /locus_tag="PF788_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDG6303129.1"
                     /translation="MISIHAISTGKIQDLPYSSKRPMRSALDKTKISQTTWLSSTGFT
                     GDEQAYKDHGGPHKAVCGFSKHNYALYQDDLPTLPTHAMFGENLTFDYLDESDVYFGN
                     QYRLGEALIEVSEIREPCWKIQAKYNIPDLVKRMSTSGKTGFYFRVLKQGYVSPNDQL
                     YLIQEAPIEHRLSVQQLNDLYYNDRQNQDMLRYALNNPFLSPTRRDKLQKMYNRTLK"
     gene            4900..5586
                     /locus_tag="PF788_000856"
     CDS             4900..5586
                     /locus_tag="PF788_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase A"
                     /protein_id="HDG6303130.1"
                     /translation="MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLI
                     KERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGG
                     ALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKV
                     ERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVG
                     TQEGVKILEK"
     gene            complement(5652..6911)
                     /gene="sdpC"
                     /locus_tag="PF788_000857"
     CDS             complement(5652..6911)
                     /gene="sdpC"
                     /locus_tag="PF788_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease SdpC"
                     /protein_id="HDG6303131.1"
                     /translation="MKNNKISGFQWAMTIFVFFVITMALSIMLRDFQSIIGVKHFIFE
                     VTDLAPLIAAIICILVFKYKKVQLAGLKFSISLKVIERLLLALILPLIILIIGMYSFN
                     TFADSFILLQSTGLSVPITHILIGHILMAFVVEFGFRSYLQNIVETKMNTFFASIVVG
                     LMYSVFSANTTYGTEFAAYNFLYTFSFSMILGELIRATKGRTIYIATTFHASMTFGLI
                     FLFSEEIGDLFSIKVIAISTAIVAVGYIGLSLIIRGIAYLTTRRNLEELEPNNYLDHV
                     NDDEETNHTEAEKSSSNIKDAEKTGVATASTVGVAKNDTENTVADEPSIHEGTEKTEP
                     QHHIGNQTESNHDEDHDITSESVESAESVKQAPQSDDLTNDSNEDEIEQSLKEPATYK
                     EDRRSSVVIDAEKHIEKTEEQSSDKNK"
     gene            7201..8136
                     /locus_tag="PF788_000858"
     CDS             7201..8136
                     /locus_tag="PF788_000858"
                     /EC_number="3.5.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamase"
                     /protein_id="HDG6303132.1"
                     /translation="MYKQGEPNLWTGRLDSETDPKKFRHFQTVTFEDLSKLEKSSMPS
                     GVGILGYAVDKGVALNKGRIGAKEGPDAIKQAFAGLPDLNQCETLVDYGNVYHDHEEL
                     IDTQKEFAMLAAKSIANHRQTFLLGGGHDIAYAQYLATRKVYPTQSIGVINIDAHFDT
                     RAEQQSTSGTSFRQILEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSH
                     VSPTIKDMIERFVHEHDVIMFTICMDVIDSAFAPGVSAPAVLGLYPHTVLELAKRIIP
                     SDKVSSVSIAEMNPTYDADNRTAKLVANLVHHFLK"
     gene            complement(8392..8811)
                     /locus_tag="PF788_000859"
     CDS             complement(8392..8811)
                     /locus_tag="PF788_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FosB1/FosB3 family fosfomycin resistance
                     bacillithiol transferase"
                     /protein_id="HDG6303133.1"
                     /translation="MLKSINHICFSVRNLNDSIHFYRDILLGKLLLTGKKTAYFELAG
                     LWIALNEEKDIPRNEIHFSYTHIAFTIDDSEFKYWHQRLKDNNVNILEGRVRDIRDRQ
                     SIYFTDPDGHKLELHTGTLENRLNYYKEAKPHMTFYK"
     gene            complement(8933..9817)
                     /locus_tag="PF788_000860"
     CDS             complement(8933..9817)
                     /locus_tag="PF788_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDG6303134.1"
                     /translation="MKIIQLEYFLAIVKYNSFTKAAQFLHISQPSLTATIKKMEADLG
                     YDLFTRSTKDIKITEKGIQFYRYASELVQQYRSTMEKMYDLSVTSEPRIKIGTLESTN
                     QWIANLIRKHHSDYPEQQYRLYEIHDKHQSIEQLLNFNIHLAITNEKITHEDIRSIPL
                     YEESYILLAPKETFKNQNWVDVENLPLILPNKNSQVRKHLDDYFNRRNIRPNVVVETD
                     RFESAVGFVHLGLGYAIIPRFYYQSFHTSNLEYKKIRPNLGRKIYINYHKKRKHSEQV
                     HTFVQQCQDYLYGLLEAL"
     gene            9977..11638
                     /gene="hutU"
                     /locus_tag="PF788_000861"
     CDS             9977..11638
                     /gene="hutU"
                     /locus_tag="PF788_000861"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HDG6303135.1"
                     /translation="MRKIQAKKGLSIECKGWEQEAVLRMLYNNLDPEVAERPEDLVVY
                     GGIGKAARNWEAFEAIEKTLRELESDETMLVQSGKPVAVFKTHEEAPRVLISNSVLVP
                     EWANWDHFNELDKKGLIMYGQMTAGSWIYIGSQGIVQGTYETFAELGNQHFNGDLAGT
                     VTLTAGLGGMGGAQPLAITMNHGVAICVDVDETRVDKRIDTKYCDVKTADLDEALKLA
                     EEAKERGEGLSIGLVGNAVDIHQAILEKGFKIDIITDQTSAHDPLNGYVPQGYSVEEA
                     KVLREKDPKKYVELSQASMAKHVELMLEFQKRGAVAFDYGNNIRQVAFNNGVKNAFDF
                     PGFVPAYIRPLFCEGKGPFRFAALSGDPKDIERADEEMRKLFPENEKLLRWLDLAEEK
                     ISYQGLPSRIAWLGYGERAKMGLALNRLVRDGEISAPIVIGRDHLDAGSVASPNRETE
                     SMKDGSDAVGDWAVLNALINTAAGGSWISFHHGGGVGMGYSLHAGMVVVADGSERAER
                     RLERVLTTDPGMGVARHVDAGYDIAIQTAKEKGIHIPMIDKAGDK"
     gene            11638..12876
                     /locus_tag="PF788_000862"
     CDS             11638..12876
                     /locus_tag="PF788_000862"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HDG6303136.1"
                     /translation="MNDLIINHIAELILPRSTDKPLKGKELDELNVVKNGTVVIKDGK
                     IVYAGTHTDDYDATETIDASGKVVSPALVDAHTHLTFGGSREHEMSLKRQGKSYLEIL
                     EMGGGILSTVNATRETSEDDLFKKAEHDLLTMIKHGVLAVESKSGYGLDRENELKQLK
                     VSNRLAEKYDLDMKHTFLGPHAVPKEASSNEAFLEEMIALLPEVKQYADFADIFCETG
                     VFTIEQSQHYMQKAKEAGFKVKIHADEIDPLGGLELAIDEQAISADHLVASSDKGKEK
                     LRNSDTVAVLLPATTFYLGKEDYADARGMLDNNGAIALATDYNPGSSVTNNLQLVMAI
                     AALKLKLSPNEVWNAVTVNAAKAIDINAGTINTGDKANLVIWDAPNHEYIPYHFGINH
                     AEKVIKDGKVIVDNTVSFKA"
     gene            13153..14274
                     /locus_tag="PF788_000863"
     CDS             13153..14274
                     /locus_tag="PF788_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 peptidase aminoacylase family protein"
                     /protein_id="HDG6303137.1"
                     /translation="MGLKDQAVTWRRYFHQFPELSDKEFKTTQKIKDILTEHHIRILD
                     LPLATGLVAEVGQGLSCIAVRADIDALPIQELVEQDFKSENEGVMHACGHDIHMASIL
                     ATAVKLKEIEGTLTGRVKFIFQSAEELGHGAFKIIETHALKDVQAVLGFHNDPSRSVG
                     TFAIKTGAITSAVDRFEFHIKGVGGHAAKPEQCNDPVIVLAQLINSIQSIVSRNLSAF
                     DEAVVTIGQISCGNTWNVIADHAYVQGTVRSFDPVVRKLVETRLQDIADGLAQAYNMK
                     INLNYTHLPGAVMNDEALTHKAIAVAQHVGYKVEMMEQPLTIGEDFSGYSQHFPSVFA
                     LIGSHSEYDLHHPQYKPDERILEKVPEYFVEFVKRLLHE"
     gene            14385..15266
                     /locus_tag="PF788_000864"
     CDS             14385..15266
                     /locus_tag="PF788_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDG6303138.1"
                     /translation="MAAQDPRTKFKTTDYEKQEQEVPGLQSEMTPAPDCGETSYQGHQ
                     RLQGYKILVTGGDSAIGRAAAIAYAKEGADVAINYLPSEEQDAQEVRQVIEESGQKAV
                     LIPGDIRDEQFNYDLVEQAYQQLGGLDNVTLVAGHQQYHDDIHGFTTEAFTETFETNV
                     YPLFWTVQKALEYLKPGASITTTSSVQGYNPSPILHDYAASKAAIISLTKSFSEELGP
                     KGIRVNCVAPGPFWSPLQISGGQPQSKIPTFGQKTPLGRAGQPVELCGTYVLLASEES
                     SYTTGQVFGVSGGVQID"
     gene            15753..16322
                     /locus_tag="PF788_000865"
     CDS             15753..16322
                     /locus_tag="PF788_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303139.1"
                     /translation="MALIVSRAILFLILALAFGIATVFPEQKLPLYIVFTLFVAVAIV
                     SNVWFTHQNVKKHIIKFNKYVAYFLSFVSGLLYIGFVIYTLTIGSYDVLPIIIFAISI
                     VLVQILENILGISIKNTRLSNKQLKVISKQRVQQFKVISLILVSVSIVFIFIALMLKW
                     WLLLVISIIVLIIITVAMIVYEKYYTTPD"
     regulatory      16375..16470
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            16547..17860
                     /locus_tag="PF788_000866"
     CDS             16547..17860
                     /locus_tag="PF788_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020444780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDG6303140.1"
                     /translation="MEVHKKSNAWALFPLLLFVALFLGVGIITGDFTSMPLNVAITIT
                     VIVALLMNRKESFAKKVEVFTKGAGHSNIVLMMLIFILAGAFSNTAEKMGGVKSTVNL
                     GLSLIPENLIIVGLFVICMFVSISMGTSVGTVAAIAPVGYGFAQATDVPTALAMATVV
                     GGAMFGDNLSMISDTTIAAVRTQHTKMKDKFRVNFKIVLPGAILTIIILYFLTNGISL
                     NHAKNYDYNLIKVVPYILVLVLALLGVNVIIVLIGGTLLAGIIGLIDGSFGWMGLLDA
                     VSKGIISMEDIAMIALLIGGLVGIIQHNGGIEWLLQFVRSKVKSKRGAELGIASLVSV
                     ADIATANNTISIIMSGPLAKNIADEYDVDSRKSASILDIFGGCFQGLLPYSPQVISAA
                     GVAGISPLMLFPYSIYPILLGVCGLIAILFNFPKLKKNTSQEMKH"
     gene            18027..18533
                     /locus_tag="PF788_000867"
     CDS             18027..18533
                     /locus_tag="PF788_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HDG6303141.1"
                     /translation="MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSA
                     RTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEYVKMTIGMPGLSETQDV
                     IEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYH
                     VIETSTQQ"
     gene            complement(18591..19355)
                     /locus_tag="PF788_000868"
     CDS             complement(18591..19355)
                     /locus_tag="PF788_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDG6303142.1"
                     /translation="MFLDEHINRNFDKLNDNDLHIAHFINTHIDECKNMKIQDLAQFT
                     HASNATIHRFTRKLGFDGYSDFKSYLKFESNKTHQLPSNSIDSFKQEIDSTFSYLERV
                     DYQLLTKKMHTASTIYLYGTGRAQLNVASEAQRILLTLHNHVIVLHDEHELKMILNKS
                     EPNDLFFIISLSGETHELLEVTNLLQLRQKYFISVTTMKDNTLAQKANYNVYVSSNTF
                     YLTDGTDYSSFISYHIFFETLVRKYNEYLLHNDISN"
     gene            19685..21289
                     /locus_tag="PF788_000869"
     CDS             19685..21289
                     /locus_tag="PF788_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDG6303143.1"
                     /translation="MNAIKRFGSAMIVPVLMFAFFGIVLGFATLFKNPTIMGSLADQH
                     TFWFKFWSVIESGGWVIFTHMEVVFVVGLPLSLAKKAPGHAALAALMGYLMFNTFINA
                     ILTQWPHTFGANLEKGVENVPGLKSIAGIATLDTNILGGIIISAIITWIHNRYYSKRL
                     PEMVGVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGYIGVWLYH
                     FLERVLIPTGLHHFIYAPIEVGPVVVNHGLKAEWLQHLNEFAKSTKPLKEQFPYGFML
                     QGNGKVFGCLGIALAMYATTPKENRKKVAALLIPATLTAVVVGITEPLEFTFLFIAPY
                     LFVLHAVLAASMDTLMYAFGVVGNMGGGLLDFISTNWLPLGKEHWGTYVAQVIIGLIF
                     VAIYFFLFRFLILKFDIPLPGRKKTEEEVKLFSKQDYKNKKGDSVDSKRASSGNEYED
                     KAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESKVADTEYFTHQQMAHGLVKSGKSIQ
                     VVVGMTVPQVREAFEQMVEDQSSEDK"
     gene            complement(21355..21885)
                     /locus_tag="PF788_000870"
     CDS             complement(21355..21885)
                     /locus_tag="PF788_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303144.1"
                     /translation="MLIDKFETYIINIAGLNDRTTRKKLSKLCKSVQFCDALQFSINK
                     QFNQYVLEISLPKQQLPYFISFLSFHQYSIFQVLSPKKINELLDSDNLYQSAKRFDIN
                     IDGLQDAFIKDKVIDIMNMFQNHTDITYTLNKSHAHIICTPEIFAKLLHTIATRNIDI
                     LSANYRSSSMSKARIS"
     gene            22153..23070
                     /locus_tag="PF788_000871"
     CDS             22153..23070
                     /locus_tag="PF788_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HDG6303145.1"
                     /translation="MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGI
                     VMLGMGLTITPNDFKMVFKAPRAVIIGVCLQFSIMPTLAFIIAKSFHLPPDIAVGVIL
                     VGCCPGGTSSNVMSYLAKANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSM
                     LWSVVQVVLIPIALGIVLQIINRKIAEKASTALPIISVVAISLILAIVVGGSKHQILT
                     TGLLIFLVVILHNVLGYTIGYWLARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFN
                     PIAAVPGAVFSFIHNITGPILAKYWSKKL"
     gene            23145..23780
                     /locus_tag="PF788_000872"
     CDS             23145..23780
                     /locus_tag="PF788_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDG6303146.1"
                     /translation="MYRAVIFDFDGTIIDTEQHLFNVINKHLEMHNADPISIDFYRSS
                     IGGAATDLHDHLIKAIGSENKDKLYEEHHLTSTTLPMIDTIKSLMAFLKQRHIPMAIA
                     TSSVKAEIMPTFKALGLDDYIEVVVGREDVEQVKPDPELYLSAVQQLNYMPTQCLAIE
                     DSVNGATAAIAAGLDVIVNTNKMTSAQDFSNVDYVAKDIDYDQIVARFFTK"
     gene            23791..23982
                     /locus_tag="PF788_000873"
     CDS             23791..23982
                     /locus_tag="PF788_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303147.1"
                     /translation="MMGYIILFFLAGPVILGVGNLVIGPIFNKQTPFRVQVRSFVVGS
                     MIYLILATIGYFLLLQGKL"
     gene            complement(24078..24263)
                     /locus_tag="PF788_000874"
     CDS             complement(24078..24263)
                     /locus_tag="PF788_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303148.1"
                     /translation="MTTALIGVIVLILLIISFVPNYRAMKSAKEQGSNATRATIMVGI
                     DIILIVLIIVTLLLKYM"
     gene            complement(24260..24616)
                     /locus_tag="PF788_000875"
     CDS             complement(24260..24616)
                     /locus_tag="PF788_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303149.1"
                     /translation="MLKQILLRATKISVLFAVAFFIINYIGMEKPDILYLVGRTIIAT
                     LAFILICLTVFTIINSPERKIKLGTTLPIALIIGIIFGAIFLTVQIGVITGLIIGVIA
                     TFIWELIEKNKGGRSS"
     gene            24896..26275
                     /locus_tag="PF788_000876"
     CDS             24896..26275
                     /locus_tag="PF788_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDG6303150.1"
                     /translation="MENNELQRGLSARQIQMIALGGTIGVGLFMGATSTIKWTGPSVI
                     LAYLIAGIFLFLIMRAMGEMIYLNPTTGSFATFASDYIHPAAGYMTAWSNIFQWIVVG
                     MSEVIAVGEYMKFWFPELPTWIPGVIAILLLMAANLFSVKAFGEFEFWFALIKVVTII
                     LMIIAGFGLIFFGFGNGGHAVGISNLWTNGGFMPNGIVGFFFALSIVIGSYQGVELIG
                     ITAGETKDPQKNIVKAVNGVIWRILIFYLGAIFVIVSVYPWNQLGDIGSPFVATFAKI
                     GITFAAGLINFVVLTAAMSGCNSGIFSASRMIYTLAHKGEMPKIFTKIMRNGVPLYTV
                     VAVSLGILIGALLNVILPLYIDGAKSIFVYVYSASILPGMIPWFMILFSHLRFRKLHP
                     EELEGHPFKMPGGAVTNYLTILFLILVLVGMVFNVETRISVLIGVIFLTIVTIYYFIR
                     YNKNNVKAK"
     gene            complement(26662..27534)
                     /locus_tag="PF788_000877"
     CDS             complement(26662..27534)
                     /locus_tag="PF788_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDG6303151.1"
                     /translation="MSNVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASL
                     LDISTSSVIRFSKKITDGGFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTR
                     TTRALNHANNELNDKTIDQICHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQL
                     VQETHIFATLLATHNSNDSVILITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVA
                     QASNIVLTYGKTDENEMHMGATTSLFAQMFTIDILYYRYVALNYHASLDFITQSKMAL
                     DNYRKHLSNINFKH"
     gene            complement(27979..28308)
                     /locus_tag="PF788_000878"
     CDS             complement(27979..28308)
                     /locus_tag="PF788_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501050.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303152.1"
                     /translation="MINETKYMRQQITNLIQIIDTIKYNTLMTDWNIQTHIYKFNQIV
                     TNELNKFKGFETSYIINENQVSYYEIITLLNKRPLRQVDYGNKIQYLNFYHTELSNAL
                     FAIKFAH"
     gene            28357..29094
                     /gene="sdpB"
                     /locus_tag="PF788_000879"
     CDS             28357..29094
                     /gene="sdpB"
                     /locus_tag="PF788_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease SdpB"
                     /protein_id="HDG6303153.1"
                     /translation="MENEKKKYTFKDIAWRDLLIIPIIGVIFYALTIAAYIGPILFGY
                     YEIDSNLIFVATITQALAYTIGIGAFYLFHLKVMPSRLRAGFAYIKKYWLRLSITYII
                     ALILIYTYEYMTQFLPKHLQYSETANELELNKMFEVPAFLPVAFLLIVIVGPIVEEIV
                     FRHILIGELGKKFNFIAMSIVSVFLFAFIHVTDAKSPFEFGPYLILSIILVFTYLKSG
                     RNLGSTIALHIANNFVSFVISVISIYA"
BASE COUNT         9788 a         4016 c         5595 g         9849 t
ORIGIN      
        1 actatttaaa tttttcaatt tcagaaattt taaaaataaa ttcattttaa aaatattgca
       61 tttatagaga atggaaatgt tatattaaga taaatacata tttttttagg aggcaaagta
      121 tgggacttgt aattgaacat gttacgaaac gttttggcaa gatgacggca gtaaatgata
      181 tttcattaaa gttagaatca ggtaaaatgt taggttttct aggaagaaat ggtgcaggta
      241 aaacaacgac atttcgtatg attttaggct taagtgaacc aactgaagga cacattacgt
      301 ataacggtaa aaaactagat aaaacaatgt acaatcgtat tggttattta ccggaagaac
      361 gcggtttaca tgggaaattg acagttgaag aagaattgaa atatttggca actttaaagg
      421 gaatgtcaaa aacagaaata caacagcaaa tatcgtattg gcttgagcgt tttgatatta
      481 ctgaaaaccg caaaaaacga attgatagtc tatcaaaagg gaatcaacaa aaaattcagc
      541 tgttagcaag tatgttacat aaaccagaat tactaatatt agatgagcct ttcagtggtc
      601 tagacccagt taatgttgag ttattaaaag aagcagttaa agacttaaat gattggggca
      661 gtacaatcgt ttatagttct caccgtatgg agcatgttga agaattatgt gatgatgttt
      721 gtattttaga taaaggtcaa cttgttgttt ctggtgatat caatcatgta cgtgcatcta
      781 atggtaacaa gaaagttgtc attgaatcag aaacaacact accagattta acaaacatta
      841 gaggcatcat tcatagtgaa aacatgaagc aaggtcttca gttgacgatt gagaatgaag
      901 acgtagccaa agatatttat caagttgtgg cacatcaagg ttatgttaaa cgattccaag
      961 ttgtagaacc atcattacaa gatatattca ttgagaaggt tggtggcaag gatgcataag
     1021 ttttgggcga catttacttt gacatatatc aaaaaaatta aagctaaatc atttgtaatt
     1081 tttatgatta ttattgctgc cttaatgatt ggcctatcta acattgataa gattattaac
     1141 atgtttgatg atggtccaga taaaattggt gtagcagcac cgaatgaaca aatctataag
     1201 gttttcaagc aacaggcgaa tacatttcat agtgatgcta agtttactaa agtttctata
     1261 gaagatgctg aaaaagaagt aaaaaaacat aaacttgata aagcttatat tatcaaggtg
     1321 aatcaaaatc gcacgttaca agggacaatc attagtgaga agcgagtaag tcatgaagat
     1381 tcacaaaaag tacaagcact gcttacagct attcaaacaa atatggtagc cggggaatta
     1441 aatatcaaca aagaagactt acaaaaatta caagcacaaa gtaaagttga taataaggtg
     1501 atttctaatg atgaagtcga taaagtatca gaaggacaaa agattttcaa ctatgcttta
     1561 gcttatggca ttatctttct aatgttcttc attgttttaa attatgcatc tcaaatagct
     1621 atggaaattg ctagtgagaa aacatcgcgt gtcattgaaa tgattattac aagtatttca
     1681 ccaatccaac atatttttgc taaaatttta ggcgttatag cagttgccgt gactcagatt
     1741 attttaattg tattgatggc agttatatgc atttttgcct ttgacttaaa agacttgcta
     1801 caaggtttta acgtggaaat gaatcaattg tcttggcaaa ttattattgt cggaattata
     1861 agtagtattg ttggaattac ggcgtatgta ttacttgcag ccatcctcgg atcattaaca
     1921 tctagaatag aagatttaaa tcaatctttg atgccactga cattacttgg tatgattgca
     1981 ttttatatcg cgatattcac gataaataat cctgatggac aacttgcttt aatcacaagt
     2041 tatattccgt ttttagcgcc atttcaatta gttgtacgcg ctcaaacttc agggcttcaa
     2101 atatatgagg tcatcttaag ttctttaatc tcaattgtaa tggtagctgt cttgatatgg
     2161 attgcaatta aaacatataa agattcagta cttacatttg aacgtggctt atttaattca
     2221 atgaaacgtg tatttaaaaa ataaaattga tgagagtgac acacatttat catataaaat
     2281 gatgatgaaa gcgtgttact cttatttttt tatatttagc tatagaataa tgtctaaaaa
     2341 agtgtacaat atgaatgtga aaacgaactt tttaaaatgg gaatgtgaag taagaagaaa
     2401 tgtaaacaaa tgatatgtag ccgatagatt attgatagca aatgtgtgat ggagtgattt
     2461 catgttatat ccgattttta tatttatatt agctggctta tgtgaaatag gtgggggata
     2521 cctgatttgg ctgtggctta gggaaggaca gtcttcactt gttgggctaa taggcggtgc
     2581 gatactcatg ttatatggtg tcattgcgac atttcaatca tttccatcat tcggaagagt
     2641 atatgcagca tatggtggcg tatttatcat catgagtttg atttttgcga tggtcgtaga
     2701 taaacaaatg ccagataaat atgatgttat cggtgcaatc atttgtattg taggtgtttt
     2761 agtaatgttg ctacccagca gagcttgaac acttgtggtt agaagggaga agtaaaaatg
     2821 atagttgaag ttgagcacca aagacaaggt gtagatttaa tcaaaattga taatgatgaa
     2881 actaaaatta tttttacgaa ttatggagca agagtagtgt cttggaaata tcatgataat
     2941 aatattgttc ttggaaatgt tgttgaagcg gatgaatttt atcatagtaa tccttttaaa
     3001 tttggtgctt ctataggaag atatagcggt agaattgata atgctaaatt taagttgaaa
     3061 ggtaaagaat atcagttaga aaaaaacaac ggtgaacatc atttacatgg tggatgtcat
     3121 ggtttggaca ataagttatt tgattatgaa attagaaatg aaattgctca aattaaagtt
     3181 atatttaaga cggtgttgaa atcagctgat gatcatttcc cgggtgatat cgatgtgacg
     3241 attacacata tttatgatgc ggatcaccaa tggtcgattg aatacgaagc agttgcatca
     3301 gaagacacat tgtttagtcc tacgaatcat gtgtacttca atttgaatcg agataataat
     3361 gtcgttgata atcatcgcat ttcaagtaat caattagata tgtatgtatt agatgagcga
     3421 aatattgtta caggtgatat tctagattta catgaagtgt ttgaagataa caagataaaa
     3481 ttgagtgata tttttacatc acaacatgcg caattaagcc aacaaatgac acgttttggt
     3541 ggtctcgatc acccatttac agttggtgaa cataaaatgt atgttgaaaa tcatgaattt
     3601 atgttagagg tcgatacaga tatgcctcat gttgtgttct ttacttttaa ccagcctgat
     3661 gagtgggata gtccatttaa tatttataaa ccacattctg gctttacatt agaaacacaa
     3721 tttttaccaa atgatattaa tttatatggt gaaaaagcac cgtcaatttt aaaagctggt
     3781 gaagtgttca attcgaaaac aagtttccgt atcgaagaaa aagtagaaaa tgattaaaag
     3841 tatcggcatt tatataatat ttatgttatt tggcggaatt ttgaataggt tatcaagaat
     3901 cgtatcaaat gaagtgacat cattaatata cagtttgaaa taaagaaaat atataacata
     3961 aaaaaggaat caatagcatc agtggttata gataagacta ttatacaaac gatgtgtaag
     4021 ttgattcctt tttgttttga aaagttcatt taacacttat aatgaaaggt aattatttca
     4081 atgttctgtt atacattttt tgaagtttat cgcgtcttgt tggtgacaga aatggattgt
     4141 ttagtgcata tcgtaacata tcttgatttt gtctatcatt ataataaagg tcattaagct
     4201 gttgtacaga taaacgatgt tcgattggtg cttcttgtat taagtaaagc tgatcatttg
     4261 gagatacata gccttgtttt aatacccgga aatagaaacc tgttttacca gatgtagaca
     4321 tgcgcttcac taaatcagga atattatatt ttgcttgaat tttccagcat ggttctctaa
     4381 tttcagaaac ctcaattaac gcttcaccta aacgatattg attaccaaag taaacatcag
     4441 attcgtctaa ataatcaaat gttaaattct ctccaaacat cgcatgagta ggtagtgtag
     4501 gtaaatcatc ttgatacagt gcataattat gcttactaaa cccacaaact gctttatgtg
     4561 gtccaccatg atctttataa gcctgttcat caccagtgaa accagttgaa gataaccatg
     4621 ttgtttgtga aatcttagtt ttatctaaag cagagcgcat cggtcttttc gagctataag
     4681 gcaaatcttg gatttttcct gtcgaaattg cgtgaattga tatcatatca ttctccttaa
     4741 cgagtattat ttaaaatata ttgtactata aaacattttt agaattgtaa attctgattg
     4801 atatgtttaa aaaaatgtta gaaataaggg tatgttaatt tatacgagtc atgtaaaata
     4861 tgaattgaat agattacata aatatgggag gctaccttca tgaaagatgt caaagcactc
     4921 aagttaatga cattaaatga tgttttaagt caaatcaatg gtgacatgac gctgggaatt
     4981 ggtacaggaa gtacaatgga attactctta cctcaaatgg cgcaactaat taaagaacgt
     5041 ggttacaata ttacaggtgt atgcacttct aataaaattg catttttagc aaaagaatta
     5101 ggtattaaaa tatgtgaaat caatgatgtt gatcatatcg acttagcaat tgatggtgct
     5161 gatgaagtag atccatcttt aaatataatt aaaggtggcg gtggtgcgct gttcagagag
     5221 aaagttatag atgaaatggc atcgcgtttt gttgtggttg tcgatgaaac gaaaatagtt
     5281 caatacttag gtgagacgtt taagttacca gtagaggtgg ataaatttaa ctggtatcac
     5341 atattacgta aaattgaatc atacgctgat ataaaagtag aacgtcgtgt aaacgaagat
     5401 gtcgcattta taactgataa tggcaattat attttagatt gtaagttacc aaaaggaatt
     5461 gacccatata agttccatga gtatttaatt catctgacag gtgtgtttga gacaggatac
     5521 ttcttagata tggcagatca agttattgta ggcactcaag agggtgttaa aattttagaa
     5581 aaataatata tagtatagaa aagcgcttgc tagcatcatc tttttaagag gtactagcaa
     5641 gcgctttgtt attatttgtt tttatctgaa gattgttctt cagttttttc gatatgtttt
     5701 tctgcatcaa ttacaactga tgaacgtctg tcttctttat aagtcgcagg ttcttttaat
     5761 gattgctcta tttcatcttc atttgaatcg tttgttaaat cgtcactttg tggtgcttgt
     5821 ttaactgatt ctgctgattc tactgactcc gaagtgatgt catgatcttc atcatgatta
     5881 gattcagttt gattacctat gtgatgttga ggttctgttt tttcagtacc ttcatgaatg
     5941 cttggttcgt cagccactgt attttcagta tcatttttag caacaccaac cgttgatgca
     6001 gtagctacac ctgttttttc agcatcttta atatttgaag aagatttttc agcctcagta
     6061 tgattagttt cttcatcgtc attgacatgg tctaaataat tattaggctc aagttcttca
     6121 aggtttcgtc ttgttgttaa atatgcaata cctcggataa ttaagcttaa accaatgtat
     6181 cctactgcaa cgattgctgt tgaaatggcg atgactttga ttgaaaatag atcgccgatt
     6241 tcttcgctaa acaagaaaat aagtccgaat gtcattgaag catggaatgt cgttgcaata
     6301 taaattgtac gtcctttagt cgctctaatt aattcaccaa gaatcataga gaatgagaat
     6361 gtataaagga agttataagc agcaaattct gtaccataag ttgtatttgc tgagaaaact
     6421 gaatacatca aaccaacaac aatacttgca aagaacgtgt tcattttcgt ttcaacaata
     6481 ttttgtaagt atgaacggaa tccgaattct actacgaacg ccatcagaat atgtccaatc
     6541 agaatgtgtg taataggtac tgataagcct gttgattgta ataaaataaa gctatctgca
     6601 aatgtattaa agctgtacat accaataatt agaataatta aaggtaaaat taaagctagc
     6661 aatagacgtt caattacttt caggctgatt gagaatttta aacctgcaag ttggaccttt
     6721 ttatatttga aaacgagtat acaaatgatt gcagcaatta atggtgctag atctgtaact
     6781 tcaaatataa agtgtttgac accaattata gactggaaat ctctgagcat aatggataac
     6841 gccattgtaa tgacaaagaa gacgaaaatc gtcattgccc attgaaaacc agaaatttta
     6901 ttgttcttca ttatatgtaa cctccattag gtaacaagca aaatatcttt tagtaacaat
     6961 tatacatatt acaagccgag agataaattg tctatgtcaa tattaatgaa aatgtaatag
     7021 tcttgacgta ttttattaac ataaatcagc taagtattcg ttattacata gaaaataggg
     7081 gtaaaagtaa tgtagataag tatttttaag atacggattt aactatgaat tgaattcaaa
     7141 atttcctata cgttatactt taattgttaa taagccacat aaataagagg gggaaatgct
     7201 gtgtacaagc aaggtgaacc aaatttatgg actggaaggt tagatagtga aacagacccg
     7261 aaaaaattta gacattttca aacagtaaca tttgaagatt tgtctaagct ggaaaagagt
     7321 agtatgccat caggggtcgg tatattaggc tatgctgttg acaaaggtgt tgctttaaac
     7381 aaggggcgca ttggtgcaaa agaaggacca gatgcgatta aacaagcatt tgcaggtttg
     7441 ccggatttga atcaatgtga aactttagtc gattacggaa atgtttatca tgatcatgag
     7501 gaattaattg atactcaaaa agaatttgct atgcttgcag cgaagtcaat tgctaatcat
     7561 agacaaacat ttttattagg tggtggacat gatattgcgt atgctcaata tttagcaaca
     7621 cgtaaagtct atccaacaca atctattggt gtgataaata ttgatgcgca ttttgataca
     7681 cgtgctgaac aacaatctac atctggaacg agctttagac aaattttaga agaagatgaa
     7741 aacacagatt atttagtgct tggtattgct caaggtggta atacgcaaag tttatttgat
     7801 tatgctaaag agaaaaagat tgattatgtc tttgcagatg aattattgag tcacgtatca
     7861 ccaacaatta aagatatgat tgaacgtttt gtacatgaac atgatgtcat tatgtttacg
     7921 atttgtatgg atgtcattga tagtgcgttt gcgcctgggg taagtgcgcc ggcagtgtta
     7981 ggtttgtatc cacatactgt tcttgaatta gcaaaacgta ttattccaag tgataaggtg
     8041 tcttcagtta gtattgctga gatgaatcca acatatgacg ctgacaatag aactgctaag
     8101 ctcgttgcta atttagtgca tcatttttta aaataattaa aaatatttat atgtgacgag
     8161 atttgcattg cagggcagaa tgtgagtatt tcttaataga agttatatta acgttgatat
     8221 atttgaaaaa taattgcagt aagaagactc ttaagttgta gtcatcttac tgcttattta
     8281 tgtttgttga aatagcaaaa ataacaactg tattgtttga aaagttctct tattatataa
     8341 taattaatta aaattttaac ggagttcaag aggccttttt ataatgacac cttatttgta
     8401 aaatgtcata tgtggtttag cctctttata ataatttaat ctgttctcaa gtgtgccagt
     8461 atgtaattct agcttatgac catcagggtc ggtaaagtaa attgattgtc tatctctaat
     8521 atctctaact cttccttcta aaatattcac gttattatct tttaacctct gatgccaata
     8581 tttaaattcg ctgtcatcta tagtgaaagc tatatgtgta tatgaaaagt gaatttcatt
     8641 acgtggtata tctttttctt catttaaagc aatccatagg cctgcaagct caaaataagc
     8701 agttttttta ccagtcaata gcaatttccc aagtaaaata tctctataaa aatgtattga
     8761 atcgtttaaa tttctgactg aaaagcatat atgattaata gattttaaca tctgcttcac
     8821 ttctttctta gaatttttat aataaattat ttttgtatcg atttttgaaa tgacgtcatt
     8881 aatttttata cgatgatctg cgcaactgca taagaggctc taataactta agttaaagag
     8941 cctctaaaag tccatataaa taatcttggc attgttgtac gaatgtatgt acttgttcgg
     9001 agtgtttgcg ttttttatgg taattgatat aaatttttcg gcctaagttt ggacgaattt
     9061 ttttatattc taaattagac gtgtgaaatg attggtaata aaatctcgga atgatagcgt
     9121 aacctaagcc gagatgaaca aatccaactg ctgattcgaa tcgatctgtt tctacaacga
     9181 catttggacg aatatttctt ctattaaaat agtcatctaa gtgtttgcgc acttgagaat
     9241 ttttgtttgg taatatgagt ggcaaatttt caacatctac ccaattttga tttttaaatg
     9301 tttccttggg tgctaataaa atgtaagatt cctcatataa aggaatggat cttatatctt
     9361 cgtgggttat tttttcattt gttatagcta aatgaatatt aaaattcagt aattgctcta
     9421 tagattgatg tttatcatgt atttcatata aacgatattg ctgttcaggg tagtcggaat
     9481 ggtgctttcg aattaaattc gcaatccatt gattcgtaga ttcaagagtc ccaattttta
     9541 tccttggttc tgatgtaacg cttaaatcat acattttttc catcgtggat cgatattgtt
     9601 gaactaattc gctcgcataa cgataaaact gtattccttt ttcggtaatc ttgatgtctt
     9661 ttgttgaacg tgtaaataag tcataaccta aatctgcttc cattttttta atcgtagcag
     9721 ttaaagatgg ctggctaata tgtaaaaatt gtgcagcttt agtaaaacta ttatatttca
     9781 cgatagccaa gaagtattct aactgaataa ttttcatgtg ttttgctcct tttatttata
     9841 gattcaagct atggataatt agtttattta tatttgttgg ctatatttta acatactata
     9901 atgaatattg aagataataa tgtaagcgtt ttaaatttag tggaattaac ttcttaaaag
     9961 aacaggagcg aattttatga gaaaaattca agcaaaaaaa ggtttgagta ttgagtgtaa
    10021 aggttgggaa caagaagcag tacttagaat gttatacaac aatttagacc cagaagttgc
    10081 tgaaagacca gaagatttag ttgtttatgg tggtattgga aaagcagcac gtaattggga
    10141 agcttttgaa gcaatagaga aaacgttacg agaattagaa tcagatgaga caatgttagt
    10201 acaatcagga aagccagttg ctgtatttaa aacacatgaa gaagcgccac gtgtattaat
    10261 ttcaaattca gtattagtgc ctgaatgggc aaactgggat cattttaatg aattagataa
    10321 aaaaggttta atcatgtatg gacagatgac agccggtagt tggatatata ttggttctca
    10381 aggtattgtg caaggtactt atgagacatt tgccgagcta ggtaatcaac actttaatgg
    10441 agatttagca ggcactgtta cactgacagc aggtttaggt ggtatgggtg gtgcgcaacc
    10501 gttagcaatt actatgaatc atggggtagc aatttgcgtg gatgttgatg aaacacgtgt
    10561 tgataagcga attgatacga aatactgtga tgttaaaaca gctgatttag atgaagcatt
    10621 aaaattagca gaagaggcga aagaacgtgg agaaggatta tcaatcgggt tagttggaaa
    10681 tgctgtagac atccatcaag cgattctaga aaaaggattt aaaattgaca ttattactga
    10741 ccaaacaagt gcacatgatc cgctaaatgg atatgtgcca caaggatact ctgtagaaga
    10801 agcgaaagta ttgcgtgaaa aagatccgaa aaaatatgtt gaactgtcac aagcttcaat
    10861 ggcaaagcat gttgaattaa tgcttgaatt ccaaaaacgt ggcgctgtag catttgatta
    10921 tggtaacaat attcgtcaag tagccttcaa taacggagtg aaaaatgctt ttgacttccc
    10981 aggctttgta ccagcttaca ttagaccatt attctgtgaa ggtaaagggc cattccgctt
    11041 tgctgcgttg agtggtgatc caaaagatat cgagcgtgcg gatgaagaaa tgcgcaaact
    11101 tttcccagaa aatgaaaagt tattaagatg gcttgattta gctgaagaaa aaatttcata
    11161 tcaaggacta ccatcacgta ttgcttggtt aggctatgga gaaagagcga aaatgggctt
    11221 agctttaaat cgtcttgtac gtgacggtga aatttcagca ccaattgtta ttggacgaga
    11281 ccatttagat gctggttcag ttgctagtcc taaccgtgaa acagaaagta tgaaagatgg
    11341 tagtgacgcg gttggtgatt gggctgtatt gaatgcactc attaacacag ctgcaggtgg
    11401 ttcatggatt tcattccatc acggtggcgg tgttggcatg ggatattcac ttcatgcggg
    11461 tatggttgtt gtagcagatg gatcagagcg tgctgaaaga agattggaac gtgtattgac
    11521 gactgaccca ggtatgggtg ttgcccgaca tgttgatgct ggctatgaca tcgctattca
    11581 aacagctaaa gaaaaaggta ttcatattcc aatgattgat aaagcaggtg ataagtaatg
    11641 aatgatttaa taattaatca tatagcagaa ttaattttac cgagatcaac agataaacct
    11701 ttgaagggta aggaattaga tgaattaaat gttgtgaaaa atggtacagt tgtcattaaa
    11761 gatggcaaaa ttgtatatgc tggaacacat acagatgact acgatgcgac tgagacgatt
    11821 gatgctagtg ggaaggtagt gtccccagca ttagtagatg cacataccca tttaacattt
    11881 ggtggatctc gagaacatga gatgtcatta aaacgtcaag gtaagtctta ccttgaaata
    11941 ttagaaatgg gtggtggcat attatctacc gttaatgcta ctagagaaac atccgaagat
    12001 gacttgttta aaaaagcaga gcatgatttg cttactatga ttaaacacgg cgtgcttgca
    12061 gttgaaagta agagtggtta tggattagat agagaaaatg aactgaagca attgaaagtg
    12121 tctaatcgtt tagctgagaa atatgattta gacatgaaac atactttcct agggcctcat
    12181 gctgtaccta aagaggcaag ttcaaatgag gcatttttag aagaaatgat tgcgttactt
    12241 ccggaagtaa aacaatatgc agactttgcg gatattttct gtgaaacagg tgtatttaca
    12301 atagaacaat cgcaacatta tatgcaaaaa gccaaagaag caggttttaa agtgaaaata
    12361 catgcggatg aaattgatcc gttaggcgga ctggaattag caattgatga acaagcaata
    12421 tcagcagacc acttagtagc ttctagtgat aaaggaaaag aaaagttgcg aaatagtgat
    12481 actgtagctg tcctcttacc tgcaacgacg ttctatttag gtaaagaaga ttatgcagat
    12541 gcaagaggca tgcttgacaa taacggtgcg attgcattag caactgatta taaccctggt
    12601 agtagtgtca caaacaactt acaacttgtt atggcgattg cagccttgaa attaaagcta
    12661 tcacctaatg aagtttggaa tgctgttacg gtcaatgctg ctaaagcaat agacattaac
    12721 gcgggtacaa ttaacacagg tgataaggct aatttagtaa tttgggatgc accaaatcat
    12781 gaatatattc catatcattt tggtatcaat cacgcagaaa aagttattaa agacggtaag
    12841 gtcatcgtag ataacacagt atcttttaaa gcataaaata attagaaagc tctaagcatt
    12901 ggtttaaact aatgtttaga gctttttgtg gtttgtaaaa acaagtatat tcgagaacac
    12961 gtttttgtat agagtctcaa ttataaaagt tagaatagtt tgacaacagt gttacgatat
    13021 tattaaacaa ctgtctatca ttaacgaaag caattaacaa gagtacattg ttgtgaaatc
    13081 atcgtttaat agtcaaagat gatcatcgta gggtagacaa catatcattg acttaaggaa
    13141 ggggaatgac cgatgggatt aaaagatcaa gctgttacct ggagaaggta ttttcatcaa
    13201 tttccagaac tatccgataa agaatttaag actacacaaa aaattaaaga tattttaaca
    13261 gaacatcata ttagaatatt agacttacca cttgcgactg ggcttgttgc tgaagtggga
    13321 caaggtctga gttgtatagc tgttcgggct gacattgatg ctttaccgat tcaagagctt
    13381 gttgaacagg attttaaatc tgaaaatgaa ggtgttatgc atgcgtgtgg tcatgatatt
    13441 cacatggcta gtattttggc tacagctgta aaattaaaag aaattgaggg cactcttact
    13501 gggcgtgtta aattcatttt tcaatcagca gaagaactag gacatggcgc ttttaaaatt
    13561 attgaaacac atgcattaaa agatgtacaa gcagtattgg gttttcataa tgacccatcg
    13621 cgttcggtag gtacatttgc aatcaaaaca ggggcaatta catcagcagt agatcgtttt
    13681 gagtttcata ttaaaggcgt gggtggtcat gctgcaaagc cagaacaatg caacgatcca
    13741 gttattgtgt tggcgcaatt gattaatagt attcaatcca tagttagtag aaatctatct
    13801 gcgtttgatg aagcggtagt aacaattgga caaatatcat gtggtaatac ttggaatgtc
    13861 attgctgatc atgcgtatgt acaaggcaca gtgcgtagtt ttgatcctgt ggtacgaaag
    13921 cttgtagaaa cacgattaca agatattgcg gacggattgg ctcaagcata taatatgaaa
    13981 atcaatttaa attatacgca tttacctggc gctgtgatga atgatgaggc attgacgcat
    14041 aaagcaattg cagtagccca acatgttgga tataaggtgg aaatgatgga acagccgctt
    14101 acgattggag aagatttttc aggttatagt caacattttc caagtgtatt tgcgttaatt
    14161 ggttctcata gtgaatatga tttacatcat cctcaatata aaccggatga aaggattctg
    14221 gaaaaagtac ctgagtattt tgttgaattt gtaaagagac tattgcatga ataattcgag
    14281 cttgttttta taaagaagaa agtaattttt agtgtaatca tgattaagtt cctaggaaga
    14341 ttgggtaaat aataaccatt aagcgaataa ggagatgtaa aaaaatggca gctcaagatc
    14401 ctagaacaaa atttaaaaca acggattatg aaaaacaaga acaagaggta ccgggtttac
    14461 aatctgaaat gacgccagca cccgattgtg gcgaaacgtc ttaccaaggt catcaacgct
    14521 tacaaggcta taaaatatta gtcacaggtg gtgactcagc aatagggcgt gcagcagcaa
    14581 ttgcgtatgc taaagaaggt gcagatgtag cgattaacta tcttccgagt gaagaacaag
    14641 atgcacaaga agtacgccaa gtgattgaag aaagtggtca aaaggcagtg ttaattcctg
    14701 gtgatataag agatgaacag ttcaactatg accttgttga acaagcatat caacaattag
    14761 gtggcttaga taatgttact ttagttgctg gacatcaaca gtatcatgat gatattcatg
    14821 gatttacaac tgaggcattt acagaaacat ttgaaacgaa tgtctatccg ctattttgga
    14881 cagttcaaaa agcattggaa tatttaaaac cgggtgcgtc aattacaacg acatcatctg
    14941 tacaaggtta taatcctagt cctattcttc atgattatgc cgcttcaaaa gcagcaatta
    15001 tttcattaac taaaagtttt tcagaagaat taggaccaaa aggaattaga gtgaactgtg
    15061 tagcgcctgg tccattctgg tcaccattac aaatttctgg tggacaacct caaagtaaaa
    15121 tcccaacatt tggtcaaaaa acacctttag gtcgtgcagg tcaacctgtt gagttatgtg
    15181 gaacttatgt gctattagcg tcagaagaat caagttatac aaccggacaa gtgttcggtg
    15241 ttagcggtgg agtgcaaata gattaggttt gtatgaagct tttaattgaa caacataata
    15301 ttaatttagt tacttcaatc cattaaatta aaatgaattg gtgaagtgta ttttaaatag
    15361 tcggtaaagg tgtgtatctt tatcggctta ttttaatact ctgtcataag gagcgtttgc
    15421 tcagggtgtg gattataagt tttaagcaga ataaactttc ttaatgagga tgtcaggaca
    15481 acaacgaaaa agttaaaaac tgttgcggga ttgggtttag ggacggttag tggaagaaag
    15541 ttaaattcat taacaagtga aatgcctaag gctagatatt aaacgtcaga acggacaaag
    15601 aataatagga tatgttttca attaaatagc gaagtattta tatgttaaga tgatgtaaat
    15661 tacatagaaa cgctacccgt agaagtactg atcatagaaa cgctgataaa cgtaaatttg
    15721 caaactcgat attaaacaaa ggggttgtta ttatggcatt aatagtatct agagctatat
    15781 tatttttgat tttagcatta gcttttggaa tagcgactgt ttttcctgaa caaaaattac
    15841 cattatatat agtattcaca ttatttgtag cagttgcgat cgtttcgaat gtatggttta
    15901 cacatcaaaa cgttaaaaag catatcatta agtttaacaa atacgtcgca tactttttat
    15961 cctttgtctc agggttactt tacattggat ttgtaattta tacattaact atagggagct
    16021 atgatgtttt accaattatt atatttgcaa taagtatcgt attggttcaa atattagaaa
    16081 atatactggg aatcagtata aaaaatacgc gtctatcaaa caaacagttg aaagtcatct
    16141 ccaagcaacg tgttcagcaa tttaaagtca tatcattaat attagtaagt gtgtctatcg
    16201 tgttcatttt tattgcatta atgcttaaat ggtggctttt acttgttatt agcattattg
    16261 ttttgattat tattacagta gcaatgattg tttatgaaaa atattatacg actcctgatt
    16321 aatttatgat tgacgtacta aggattatct tgtaacgtaa acgtaaataa gcatcactta
    16381 tctagagagg tggagggact ggccctatga agcctcggca acatctcgaa tgtgccaatt
    16441 ccagtaaccg taatggtttg aagataagca ggtaaagcac atgaaaacct ctttcttcat
    16501 cgtttgtgag aaagaggtat ttttaattgg aaagcaggta aaaaggatgg aagtacataa
    16561 aaagagcaat gcttgggcat tattcccctt gttattattt gtggcgttgt ttttaggcgt
    16621 aggtattatc acaggtgatt ttacttcaat gccattaaat gttgcaatta cgataacggt
    16681 aattgtggcg ttattaatga atcgaaaaga atcatttgct aaaaaagttg aggtcttcac
    16741 gaaaggtgca ggccattcaa acattgtttt aatgatgttg atttttattt tagcaggtgc
    16801 attttcaaat acagctgaaa aaatgggtgg cgtaaagtcg acagttaatt taggactatc
    16861 attaatccca gaaaatttaa ttattgtagg attgtttgtg atttgtatgt ttgtttctat
    16921 atctatgggg acgtctgtag gaactgttgc tgcaatagca cctgttggtt acggatttgc
    16981 acaagcgaca gatgtaccaa ctgcgctagc aatggctaca gttgttggag gtgcaatgtt
    17041 cggcgataat ctatcaatga tttcagatac aacaattgct gcggttagaa cacaacatac
    17101 gaaaatgaaa gataaattca gagtaaactt taaaattgta ttgccaggtg ctattttaac
    17161 gattattatt ctgtatttct taacgaatgg catttcttta aatcatgcta aaaactatga
    17221 ttataatcta attaaagttg taccgtatat cttagtattg gtattagcat tattaggtgt
    17281 aaatgtcatt atcgtattga ttggcggaac attattagcc ggaatcattg gtctcataga
    17341 tggttcattc ggttggatgg ggctactaga tgcagtgtcc aaaggtatta taagcatgga
    17401 agatattgct atgattgcgt tgctaattgg tggtttagtc ggtattattc aacacaatgg
    17461 tggtattgaa tggttgttgc aatttgttcg ctctaaagtg aaatcaaagc gtggcgcaga
    17521 attaggaatt gctagtttgg taagtgtcgc agatattgcc acggcaaaca acaccatctc
    17581 tattattatg tcaggtcctt tagctaaaaa tattgcagat gaatatgatg tagattcaag
    17641 gaaatcagca agtattcttg atatatttgg aggctgcttc caaggtttat taccatatag
    17701 cccgcaagtc atttcagcgg ctggtgtagc tggtatttca ccgttaatgt tattcccata
    17761 cagcatttat cctatattat taggtgtatg cggacttatt gcgattttat ttaattttcc
    17821 aaagctaaaa aagaacacta gtcaagaaat gaaacattaa tgcttaacaa tatatcgatg
    17881 tagccaagta aggtggcttg ttatattaac agatcatgtt gtactcaccg tataacgcta
    17941 atcttttaaa aatgatgatc atctatgttt ggaactgagc aaaaatacgt taaaataaaa
    18001 gtaagagcga aagtgggtgg acaacagtgg caaaatttaa tgtagagaat gaacatgtcg
    18061 aagttgaaat tgaaaagctt tataaatttt ctccagagtt agtatacgaa gcttggacaa
    18121 agaaagattt gttgaaacaa tggtttatga catcagccag aacgaataaa gagattgaag
    18181 cggacgttaa agaaggcggt aaatatcgta ttgtagatca acaacgtaat ggcaaagtaa
    18241 atgtgattga aggcatttat gaatctttag ttatggatga atacgttaag atgactatcg
    18301 gtatgcctgg actaagtgaa acgcaagatg tcattgaggt agaatttttt gaacgtgaaa
    18361 caggtggcac ccaaatgcta ttttattatc gttcattagt tgaaaaagaa agacgattta
    18421 ctaatttaga atacaagcaa aagaaaaaag aatatcatga tgccatggtg catggtttcg
    18481 aattgatgtt tgataagatg taccacgtta tcgaaacatc aacacaacaa taaaatgata
    18541 aaaggaagtt atgataggct caaggccatt aaatcataac ttcctttttt ctaatttgaa
    18601 atatcattat gtagtaaata ctcattatat tttcttacaa gtgtttcaaa gaatatatga
    18661 taactgatga agctagaata gtctgtacca tcagttaagt agaatgtgtt actggataca
    18721 tagacgttgt aatttgcttt ttgagcaagg gtattatctt tcattgtagt aacagaaata
    18781 aagtattttt gtctaagttg aagcaagttt gttacttcta ataattcatg tgtttcacct
    18841 gataatgaaa taataaagaa taaatcatta ggttcactct tgttcaaaat cattttaagt
    18901 tcatgttcat catgaagtac aatgacatga ttatgtaacg ttaacaatat acgctgtgcc
    18961 tctgaagcaa cgtttaactg tgcacgccct gtaccataca aatatattgt tgaagctgta
    19021 tgcatttttt tagtaagaag ctggtaatca acgcgttcta aataactgaa tgtactatcg
    19081 atttcttgtt tgaaactatc gatagagtta gaaggtaatt ggtgtgtctt attactttca
    19141 aatttaaggt acgatttaaa atcactataa ccgtcaaaac ctaatttgcg tgtaaatctg
    19201 tgaatggttg cattcgaggc atgtgtgaat tgcgctaaat cttgtatttt catattttta
    19261 cattcatcta tatgtgtatt gataaagtga gcgatatgta aatcattatc attaagttta
    19321 tcaaagtttc gattaatgtg ttcatctaaa aacatattca acctccttga aaataaatgt
    19381 gtaatagatc gttattacat taaaatcttg tatgtcatta tatatatttg tgtattgata
    19441 taggtttgat tatgcgttta aaacgaatgt attacaaata caacgatgtc atatataagg
    19501 tcgtgaaaaa attttcacta tatgaaaaga taatctgatt atacaaaata ctttcaaaat
    19561 acgtcaatgt cgttgtaggt gtgtaagcgt ttactatata ttatatttaa atagtaagac
    19621 atctatttat aaatgaatct aattagatgt attgttagga aagatgatat ggagggaata
    19681 gaagatgaat gcgataaagc gtttcggtag tgcaatgatt gtaccggtat taatgttcgc
    19741 tttctttggg atagtgcttg gctttgcgac attatttaaa aatcctacaa tcatggggag
    19801 tttagcagat caacatacgt tttggtttaa attttggtca gtaatagaat ctggtggctg
    19861 ggttattttt acgcatatgg aagttgtatt tgttgtaggt ctaccacttt ctttagctaa
    19921 aaaagcacca ggtcatgcag cacttgcagc attgatgggt tacttaatgt ttaatacatt
    19981 tataaatgcc attttaacac aatggccaca tacgtttggc gctaatttag aaaaaggcgt
    20041 tgaaaatgta cctggtttaa aatcaattgc aggtattgcc acattggata cgaatattct
    20101 aggtggtatt attatttcag ctattattac ttggattcac aatagatact atagtaaacg
    20161 attaccagaa atggttggtg tattccaagg tttaacattt gtagttacga tttcattttt
    20221 tgtgatgtta ccattagcag caattacttg tgttatttgg ccaactgttc agcacggtat
    20281 tggttcaatg caacacttta tcattgcttc aggctatatc ggtgtatggt tgtatcactt
    20341 cttagaacgt gtattaatac caacaggatt acatcacttt atttatgcac caattgaagt
    20401 tggaccagta gtagtcaatc acggcttgaa agctgaatgg ttacaacatt taaatgagtt
    20461 tgctaagagt actaagccat taaaagagca attcccttat ggctttatgc ttcaaggaaa
    20521 tgggaaagta tttggatgtt taggtattgc tttagcaatg tatgctacga cacctaaaga
    20581 aaatcgtaaa aaggtggcgg cactacttat tcctgccaca ttaacagcag tcgttgtagg
    20641 tattactgag ccattagagt ttacattctt attcatcgca ccatacttat ttgttttaca
    20701 cgcagtttta gcagcatcaa tggatacttt aatgtacgca tttggtgttg taggtaacat
    20761 gggtggtggc ttgttagact ttatttcaac aaactggttg ccattaggta aagaacattg
    20821 gggtacttat gttgcacaag ttattatcgg tctgatattt gtagcgattt acttcttctt
    20881 attcagattc ttaattttga aatttgatat tccattacct ggacgtaaga aaacagaaga
    20941 ggaagttaaa ttattttcta agcaagatta caaaaataaa aaaggtgata gcgtagattc
    21001 taaacgtgct tcatctggta atgaatacga agacaaagct gcatattacc tcgacggttt
    21061 aggcggcaaa gaaaatatca aagatgttac taactgtaca acaagattac gcttaactgt
    21121 ttatgatgaa agtaaagttg cagatacgga atatttcacg catcaacaaa tggcacacgg
    21181 attagtaaag agtggtaaga gtatccaagt tgtagtaggt atgacagtac cacaagttcg
    21241 tgaagcattt gaacaaatgg ttgaggatca atcgtccgaa gataaataat acaaaaaaag
    21301 acacatcact atacgcaatc attgtaaatg atcatcgtat agatgtgtct tttattatga
    21361 tatacgagct ttgctcatag atgacgatct ataattggca gatagaatgt cgatatttct
    21421 agttgcaatc gtatgtaaca atttagcaaa tatttctggc gtacatataa tatgtgcatg
    21481 agacttattc aacgtataag tgatatcagt gtgattttgg aacatattca taatatcgat
    21541 gactttgtct ttaatgaaag catcttgcaa gccatcaata ttgatatcga aacgctttgc
    21601 agattgatat aaattatcag aatcaagtaa ttcatttatt ttctttggtg aaagtacttg
    21661 gaaaatacta tactgatgaa aacttaaaaa tgaaatgaag tatggaagtt gttgctttgg
    21721 taagctaatt tctaatacat actgattaaa ctgtttgttt attgagaatt gcaacgcatc
    21781 acaaaattgt acacttttgc ataacttact taattttttt ctagtagtac ggtcatttaa
    21841 accggcgatg ttgatgatgt atgtttcgaa tttatcaatt aacatgtgag gacctcccga
    21901 ggaatacatg gcattaaata cacgtttaat atttataaag gtgacttaat tttgttcaag
    21961 ttgattttac cacgcttttt ttctttattc actaagactt ttgaatgaag tttaaaataa
    22021 ttgtttatca gtgataaaat atttgcaata agaagagaat gactaaataa tcttaatttt
    22081 cagaaaagta attgtaacct tactggtctt atggtaatat ttttcaatat tatcgacgag
    22141 gatgtgttaa caatgtttca aaaattgagt atatttgcca cgaagagttt tttggtatgg
    22201 atgttagtag cagctgttat tggatttatt ttcccacaac atgttgcgac attaggtaaa
    22261 tgggtacctt atttacttgg tattgttatg ttaggtatgg gattaacaat tacacctaat
    22321 gatttcaaaa tggtctttaa agcacctaga gcagtaatta ttggtgtctg tctacaattc
    22381 agtattatgc ccacattagc atttataatt gcaaagtctt ttcatttacc acctgatatt
    22441 gctgttggcg taatattagt cggatgttgt ccgggtggga catcaagtaa tgtaatgagt
    22501 tatttagcca aagctaacgt agcactttct gtttctatta cgacggtctc tacgttgcta
    22561 gcgccattcg ttacacctgc gttaatatat ctatttgcaa atgaatggtt ggaagtatct
    22621 ttcgtgagta tgttgtggtc agttgttcaa gttgtattaa ttccaattgc tttaggtatt
    22681 gttttgcaaa ttattaatcg taaaattgct gaaaaagctt ctacagcttt gccaattata
    22741 tcagttgttg ctatttcatt aattttagca atagttgtag gtggcagtaa gcaccaaatc
    22801 ttaactacag gattattaat atttttagta gttattttac ataacgtatt agggtatacg
    22861 attggatatt ggttagctcg tcttttaaaa ttagatcgac aagatcaaaa agcagtcagt
    22921 attgaagttg gaatgcagaa ctctggttta gctgtgtcat tagcagcatt gcattttaat
    22981 ccaattgcag cagtaccagg cgcagtgttt agtttcattc ataatataac agggcctatt
    23041 ttagcaaagt attggtcaaa aaagttataa ttgcactaat agaatgaagt ggtcatcgga
    23101 ctatgttaag ctttgataaa gagaaaaaat agaggagtaa atatatgtat agagcagtta
    23161 tatttgattt cgatggaaca ataatagata cggaacaaca tttatttaat gttattaata
    23221 aacatttaga gatgcataat gccgatccta taagcattga tttttatcgt tcttctattg
    23281 gaggagcagc tacagatttg catgaccatt taattaaagc gattggttcg gaaaataaag
    23341 ataaacttta tgaagaacat catcttacta gtacaacatt accgatgatt gatacgatta
    23401 aatcattgat ggcattttta aagcaacgtc acattcctat ggcaattgcc acaagtagtg
    23461 tgaaagcgga aataatgccc acctttaaag cattaggtct agacgattat atagaggtag
    23521 ttgttggtag agaagatgtt gaacaagtta aacctgaccc tgaattatat ttatctgcag
    23581 tacaacaatt aaattatatg ccgacacaat gtttggctat tgaagattct gtaaatggtg
    23641 caacagccgc gattgcagct ggattagatg ttattgttaa tacgaataaa atgacaagcg
    23701 cacaggactt ttctaatgta gattatgtag caaaagatat tgattacgat caaattgtag
    23761 cgcgtttctt tacgaaatag gaggcgtatc atgatgggtt acattatatt gttttttcta
    23821 gctggtccag taattttagg cgttggaaat ttggtgattg gtcctatatt taacaaacag
    23881 acaccatttc gcgtgcaagt aagatctttt gttgttggtt caatgattta cttaatactc
    23941 gcaacaattg gctatttttt actattacaa ggtaaacttt aacgagaaaa ccaccttacc
    24001 tcattaaatg gacgaccata tgtatgtgaa atggtagaac gttcatgttt atgtatgaga
    24061 tagggtggtt taaatagtta catatatttt aataataacg tcacgatgat aagtacaatt
    24121 aagataatat ctatgcctac cataattgta gctcttgttg cattacttcc ttgttctttt
    24181 gctgatttca tagcacggta gtttggcaca aagctaataa ttagtaagat taatacaatt
    24241 acaccaatta atgctgttgt catgatgaac gacctccttt atttttttca atcaattccc
    24301 aaataaacgt agcaatcaca ccgatgatta acccagtgat gacaccgatt tgtaccgtta
    24361 aaaatatggc gccgaaaatg ataccaataa ttaatgcaat cggtaaagtc gtaccgagtt
    24421 taatcttgcg ctctggagaa ttaataatag taaatactgt aagacaaatg agtatgaaag
    24481 caagtgttgc aataatagtt cttccaacta aatataggat gtcaggtttt tccataccga
    24541 tataatttat gatgaaaaat gctacagcaa agagtaccga tatttttgta gcacgtagca
    24601 gtatttgttt taacattgat atactccttt ttaatattat taaaattata tcataattac
    24661 caagaatagc tgaagttgta tgtgactcaa cggtacttga gcaacttttt taatttttta
    24721 gaaaaatcac aaaataattg tttgcaaagt tgcaaaagcc tgctatagta gttctgtaaa
    24781 cgattgcatg gtatgcaaat attaatgtac caaaatcgat aatttatagt ataattacgg
    24841 caataagttt ttttatggat ttatttagta tcaatcagag atggggtaag aagttatgga
    24901 gaacaatgaa ctacaaaggg gattgagtgc ccgtcaaatt caaatgattg cacttggtgg
    24961 tacgattggc gtggggcttt tcatgggtgc gacaagtaca attaaatgga caggcccatc
    25021 agttatcctt gcatatttaa ttgcgggtat ctttttattt ttaatcatga gagcaatggg
    25081 ggaaatgatt tatttaaacc ctacaacagg atcatttgca acatttgcaa gtgattatat
    25141 acatcctgca gcaggttata tgacagcatg gagtaatata ttccaatgga ttgtagttgg
    25201 tatgagtgag gtcatcgcag taggagaata tatgaagttt tggttcccgg aattgccaac
    25261 ttggattcct ggtgttattg ctattttatt attaatggca gcgaatttat tctcggtaaa
    25321 agcgtttgga gaatttgaat tttggtttgc tttaattaaa gttgtaacaa ttattttaat
    25381 gattattgct ggttttggtc ttattttctt tggttttgga aatggtggcc atgcggtagg
    25441 tatttctaat ctatggacaa atggcggatt tatgccaaat ggtattgttg gtttcttctt
    25501 tgcattatca attgtaattg gttcatacca aggtgtggaa ctgataggta ttacggcagg
    25561 tgaaactaaa gatcctcaga aaaatatcgt taaagcagtg aatggtgtta tctggagaat
    25621 tttaattttc tatttaggcg ctatttttgt tattgtttca gtgtatcctt ggaatcaatt
    25681 aggagacatt ggaagtccgt ttgttgcaac atttgctaaa atcggtatta catttgcagc
    25741 tggattaatt aactttgttg tattaactgc agcaatgtca ggatgtaact caggtatttt
    25801 cagtgcgagt cgtatgattt atacacttgc tcataaaggt gaaatgccga aaatatttac
    25861 taaaatcatg agaaatggtg taccattgta cactgttgta gcagtatctc ttggtatttt
    25921 aattggtgct ttattaaacg taattttacc tttatatatc gatggagcga agagtatttt
    25981 cgtatacgtt tatagtgcgt ctattttacc aggtatgatt ccttggttta tgattttatt
    26041 cagtcattta cgttttagaa aattacaccc tgaagaattg gaaggtcacc cattcaaaat
    26101 gcctggtggc gcagtaacta actatttaac aatcttattc ttaatattag tattggttgg
    26161 tatggtattt aatgttgaaa ctagaatatc agtgcttatt ggtgtcatct tcttaacgat
    26221 tgtaacgatt tattatttta ttagatataa taaaaataat gtaaaagcaa aatagtatga
    26281 ttataatgtg cgcttatctt atgacaaact tggccctagc ttattaaagt taaatagcca
    26341 aagaatgtta tgagtaggcg cattttttta taaatatagc ttaaatcgaa gttgtagtgt
    26401 gaaaaactta taagtggcaa tattatcgtt agtttttact gtgggcttta aaataaaaaa
    26461 tagcattatt aaaataacaa acgcaattga tatatggaat gaatccgtta atcaactgcg
    26521 tttgttttta atataagaaa ttgaatggcc ttatcaaatc attggtcata tgcgtatgtt
    26581 atacaagata aaagacatgt aagctttgaa aatgatgcat aaattattat atgacatgat
    26641 taaagaattt atataagact gttaatgttt aaagttaata tttgataaat gtttacgata
    26701 gttatctaaa gccattttag attgtgttat gaaatctaat gatgcgtgat aatttaatgc
    26761 aacataacga taatataaaa tatcaatagt gaacatttga gcaaataatg aagttgttgc
    26821 tcccatatgc atctcatttt catcagtttt cccataagtt aaaacaatat ttgatgcctg
    26881 tgctacggga ttatcccttg tactagtaat tgtaattata ggtatatggt agtcatcaat
    26941 aactttaacc attgattgca tttcactttg cgtaccattg ttagtaataa gaataacact
    27001 gtcgttcgaa ttgtgagttg ctaataatgt agcaaaaata tgtgtttctt gaacaagttg
    27061 aatattaaga cctattcttg ataacttttg gtataagtcg gtagcaacta caaaagatgc
    27121 gccaaaacca tatataaaaa tcgtctcaga acgttttaaa caatgacata tttgatcaat
    27181 agttttatca tttaattcgt tatttgcatg attaagtgcg cgtgtagtac gtgtatggag
    27241 tttagttctt aaagattctg tgctttcgtt attcattaat tcaacattgt aaattgatga
    27301 tgctttagga acatatttag atatatttat tttcaagtcg tgaaaaccgc catcagtaat
    27361 tttcttgctg aatcgaatga ctgatgatgt actaatatct aataagcttg ctaagtcttg
    27421 agacctcatt ttaatcacct tttgaggtga atttagtata aatttagcta tctttttttc
    27481 atttttagtc atatatggat attgactatc tatttctgtt agtacgtttg acatattaat
    27541 cactccactt taacgcaata tattttatta gcgttggcta ttgttgttta acgcgatggt
    27601 atttacaact tgtaacgtaa gagaatgaaa aataagctga atatgttgtt tgtttaatga
    27661 tattgaattg taaaactgta aattttttta agatgtatag ataaaaaata gcatactccc
    27721 atgtgcaaat aatatatcaa tatattgata tattaccgta agtcatactg tatattccca
    27781 atttatacat tatgtactca tctatttaaa tcttagtaaa tgtagttata taagactaaa
    27841 tctaccatct taatcattat gattataact cgattaatgc atctttacaa tttgaagaaa
    27901 ctttttaatt gtataattta tgtaataaag tgaattttaa taaataactt gtttaaatga
    27961 cattttatga aaaataggtt aatgggcaaa tttaattgca aataatgcgt tagatagttc
    28021 tgtatgataa aaattaagat attgaatttt gttaccatag tcgacttgtc ggaggggacg
    28081 tttattaagt agtgttataa tttcataata ggaaacttga ttttcgttta ttatatatga
    28141 tgtttcaaag cctttgaact tattcaattc attagtaact atttggttaa atttataaat
    28201 atgcgtttga atgttccaat ctgtcattaa agtattatat ttaatcgtat caatgatttg
    28261 aatcaaatta gtaatttgtt gtctcatata cttagtttcg tttatcatgt agaagtacct
    28321 ccaaaaatca attattaaac aggaaaggat ataacagtgg aaaatgaaaa aaagaaatac
    28381 acgtttaaag atatagcatg gagagatttg cttataattc caattatagg tgttatattt
    28441 tatgcactca caattgcagc ttacatagga ccaattttgt ttggttatta tgaaatcgat
    28501 agtaatctga tatttgtagc gactatcaca caagctttag catatacgat tgggattggc
    28561 gcattttatt tatttcattt aaaagtgatg ccatcaaggc ttcgagctgg ttttgcgtat
    28621 atcaaaaaat attggcttag attgtcaata acgtatatta ttgctctcat cttaatttat
    28681 acatatgaat atatgacaca gtttctacct aaacatttgc aatatagtga aacagccaat
    28741 gaacttgagc taaataaaat gtttgaagtg cctgcatttt tacctgtagc attcttatta
    28801 attgtgattg taggtccaat agttgaagaa atcgtattta gacatatttt aattggagaa
    28861 ttaggtaaga agtttaattt tatagctatg agtattgttt cggtgttctt atttgcattt
    28921 attcatgtga ctgatgcaaa gtcgccgttt gagtttggtc catatctcat actatccatc
    28981 atattagttt tcacttattt aaaatctgga agaaacctag gttcaacaat tgcattacat
    29041 atagcaaata attttgtttc tttcgttata tcagtaataa gtatttatgc gtagataaag
    29101 aggtcgggac attaagtttt taggcaatga aaaaagctga tttctattaa ttatttgata
    29161 gaaatcagct tttttgatat gcattttatt atgaaactga ataaataaag attcaattag
    29221 cgcatcagta ttaggattca ctctaaaa
//
LOCUS       DAMQWL010000022        29038 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.022, whole genome shotgun sequence.
ACCESSION   DAMQWL010000022 DAMQWL010000000
VERSION     DAMQWL010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 29038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29038
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.022"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1491
                     /gene="aur"
                     /locus_tag="PF788_000880"
     CDS             <1..1491
                     /gene="aur"
                     /locus_tag="PF788_000880"
                     /EC_number="3.4.24.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001225028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloproteinase aureolysin"
                     /protein_id="HDG6303154.1"
                     /translation="ALTLLSTLSPAALAIDSKNKPANSDIKFEVTQKSDAVKALKELP
                     KSENVKNIYQDYAVTDVKTDKKGFTHYTLQPSVDGVHAPDKEVKVHADKSGKVVLING
                     DTDAKKVKPTNKVTLSKDDAADKAFKAVKIDKNKAKNLKDKVIKENKVEIDGDSNKYV
                     YNVELITVTPEISHWKVKIDAQTGEILEKMNLVKEAAETGKGKGVLGDTKDININSID
                     GGFSLEDLTHQGKLSAFSFNDQTGQATLITNEDENFVKDEQRAGVDANYYAKQTYDYY
                     KDTFGRESYDNQGSPIVSLTHVNNYGGQDNRNNAAWIGDKMIYGDGDGRTFTSLSGAN
                     DVVAHELTHGVTQETANLEYKDQSGALNESFSDVFGYFVDDEDFLMGEDVYTPGKEGD
                     ALRSMSNPEQFGQPAHMKDYVFTEKDNGGVHTNSGIPNKAAYNVIQAIGKSKSEQIYY
                     RALTEYLTSNSNFKDCKDALYQAAKDLYDEQTAEQVYEAWNEVGVE"
     gene            1858..2307
                     /locus_tag="PF788_000881"
     CDS             1858..2307
                     /locus_tag="PF788_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HDG6303155.1"
                     /translation="MKKSKRLEIVSTIVKKHKIYKKEQIISYIEEYFGVRYSATTIAK
                     DLKELNIYRVPIDCETWIYKAINNQTEQEMREKFRHYCEHEVLSSIINGSYIIVKTSP
                     GFAQGINYFIDQLNIEEILGTVSGNDTTLILTASNDMAEYVYAKLFK"
     gene            2310..2477
                     /locus_tag="PF788_000882"
     CDS             2310..2477
                     /locus_tag="PF788_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303156.1"
                     /translation="MYQMNNKNLFRITCTQVSYQILTCVRVFLWKERIHSHSIDCIKN
                     FIQHVFMGVFE"
     gene            2654..3889
                     /gene="arcA"
                     /locus_tag="PF788_000883"
     CDS             2654..3889
                     /gene="arcA"
                     /locus_tag="PF788_000883"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HDG6303157.1"
                     /translation="MTDGPIKVNSEIGALKTVLLKRPGKELENLVPDYLDGLLFDDIP
                     YLEVAQKEHDHFAQVLREEGVEVLYLEKLAAESIENPQVRSEFIDDVLAESKKTILGH
                     EEEIKALFATLSNQELVDKIMSGVRKEEINPKCTHLVEYMDDKYPFYLDPMPNLYFTR
                     DPQASIGHGITINRMFWRARRRESIFIQYIVKHHPRFKDANIPIWLDRDCPFNIEGGD
                     ELVLSKDVLAIGVSERTSAQAIEKLARRIFENPQATFKKVVAIEIPTSRTFMHLDTVF
                     TMIDYDKFTMHSAILKAEGNMNIFIIEYDDVNKDIAIKQSSHLKDTLEDVLGIDDIQF
                     IPTGNGDVIDGAREQWNDGSNTLCIRPGVVVTYDRNYVSNDLLRQKGIKVIEISGSEL
                     VRGRGGPRCMSQPLFREDI"
     gene            3922..4932
                     /gene="argF"
                     /locus_tag="PF788_000884"
     CDS             3922..4932
                     /gene="argF"
                     /locus_tag="PF788_000884"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDG6303158.1"
                     /translation="MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGI
                     KHHYLSGKNIALLFEKNSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKV
                     LGRMFDGIEFRGFSQQAVEDLAKFSGVAVWNGLTDDWHPTQMLADFMTIKENFGYLEG
                     INLTYVGDGRNNIAHSLMVAGAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSVM
                     ITDNIAEAVENTDAIYTDVWVSMGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLH
                     CLPAFHDTNTLYGQEIYEKYGLAEMEVTDQIFRSEHSKVFDQAENRMHTIKAVMAATL
                     GS"
     gene            5023..6453
                     /gene="arcD"
                     /locus_tag="PF788_000885"
     CDS             5023..6453
                     /gene="arcD"
                     /locus_tag="PF788_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine-ornithine antiporter"
                     /protein_id="HDG6303159.1"
                     /translation="MNESGDNKLSKSSLIGLVIGSMIGGGAFNIMSDMGGKAGGLAII
                     IGWIITAIGMISLAFVFQNLTNERPELDGGIYSYAQAGFGDFVGFISAWGYWFSAFLG
                     NVAYATLLMSAVGNFFPIFKGGNTLPSVIVASLLLWGVHFLILKGVETAAFINSIVTV
                     AKLIPILLVIICMIIAFNFDTFKTGFFSMTSEGVLPFSWASTMSQVKSTMLVTVWVFI
                     GIEGAVIFSSRAKNKKDVGSATVIGLISVLIIYFLLTVLAQGVILQNHISQLDSPSMA
                     QVLATIVGGWGSTLVNIGLIISVLGAWLGWTLLAGELPFIVAKDGLFPKWFAKENKNG
                     APVNALLITNILVQLFLISMLFTQSAYQFAFSLASSAILYPYMFSAFYQVKYTLEHRQ
                     QATTKQWTIGIIASIYAIWLIYAAGINYLLLTMLLYIPALLVYTIVQKNNQTRLIKSD
                     YILFMIIIVLAVIGLIKLLMGTINVF"
     gene            6470..7411
                     /gene="arcC"
                     /locus_tag="PF788_000886"
     CDS             6470..7411
                     /gene="arcC"
                     /locus_tag="PF788_000886"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HDG6303160.1"
                     /translation="MKEKIVIALGGNAIQTTEATAEAQQTAIRCAMQNLKPLFDSPAR
                     IVISHGNGPQIGSLLIQQAKSNSDTTPAMPLDTCGAMSQGMIGYWLETEINRILTEMN
                     SDRTVGTIVTRVEVDKDDPRFDNPTKPIGPFYTKEEVEELQKEQPDSVFKEDAGRGYR
                     KVVASPLPQSILEHQLIRTLADGKNIVIACGGGGIPVIKKENTYEGVEAVIDKDFASE
                     KLATLIEADTLMILTNVENVFINFNEPNQQQIDDIDVATLKKYAAQGKFVEGSMLPKI
                     EAAIRFVESGENKKVIITNLEQAYEALIGNKGTHIHM"
     gene            7510..8214
                     /locus_tag="PF788_000887"
     CDS             7510..8214
                     /locus_tag="PF788_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDG6303161.1"
                     /translation="MTENFILGRNNKLEHELKALADYINIPYSILQPYQSECFVRHYT
                     KGQVIYFSPQESSNIYFLIEGNIIREHYNQNGDVYRYFNKEQVLFPISNLFHPKEVNE
                     LCTALTDCTVLGLPRELMAFLCKANDDIFLTLFALINDNEQQHMNYNMALTSKFAKDR
                     IIKLICHLCQTVGYDQDEFYEIKQFLTIQLMSDMAGISRETAGHIIHELKDEKLVVKD
                     HKNWLVSKHLFNDVCV"
     gene            8564..11263
                     /gene="clfB"
                     /locus_tag="PF788_000888"
     CDS             8564..11263
                     /gene="clfB"
                     /locus_tag="PF788_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSCRAMM family adhesin clumping factor ClfB"
                     /protein_id="HDG6303162.1"
                     /translation="MKKRIDYLSNKQNKYSIRRFTVGTTSVIVGATILFGIGNHQAQA
                     SEQSNDTTQSSKNNASADSEKNNMIETPQLNTTANDTSDISANTNSANVDSTTKPMST
                     QTSNTTTTEPASTNETPQPTAIKNQATAAKMQDQTVPQEANSQVDNKTTNDANSIATN
                     SELKNSQTLDLPQSSPQTISNAQGTSKPSVRTRAVRSLAVAEPVVNAADAKGTNVNDK
                     VTASNFKLEKTTFDPNQSGNTFMAANFTVTDKVKSGDYFTAKLPDSLTGNGDVDYSNS
                     NNTMPIADIKSTNGDVVAKATYDILTKTYTFVFTDYVNNKENINGQFSLPLFTDRAKA
                     PKSGTYDANINIADEMFNNKITYNYSSPIAGIDKPNGANISSQIIGVDTASGQNTYKQ
                     TVFVNPKQRVLGNTWVYIKGYQDKIEESSGKVSATDTKLRIFEVNDISKLSDSYYADP
                     NDSNLKEVTDQFKNRIYYEHPNVASIKFGDITKTYVVLVEGHYDNTGKNLKTQVIQEN
                     VDPVTNRDYSIFGWNNENVVRYGGGSADGDSAVNPKDPTPGPPVDPEPSPDPEPEPSP
                     DPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESDSDSESDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDSDSDSESDSDSESDSESDSDSDSDSDSDSDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS
                     DSDSDSDSDSDSDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPKGEVNHSNKVSKQHK
                     TDALPETGDKSENTNATLFGAMMALLGSLLLFRKRKQDHKEKA"
     gene            11379..12140
                     /locus_tag="PF788_000889"
     CDS             11379..12140
                     /locus_tag="PF788_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDG6303163.1"
                     /translation="MAYISLNYHSPTIGMHQNLTVILPEDQSFFNSDTTVKPLKTLML
                     LHGLSSDETTYMRYTSIERYANEHKLAVIMPNVDHSAYANMAYGHSYYDYILEVYDYV
                     HQIFPLSKKRDDNFIAGHSMGGYGTIKFALTQGDKFAKAVPLSAVFEAQNLMDLEWND
                     FSKEAIIGNLSSVKGTEHDPYYLLDKAVAEDKQIPKLLIMCGKQDFLYQDNLDFIDYL
                     SRINVPYQFEDGPGDHDYAYWDQAIKRAITWMVND"
     gene            12385..12840
                     /locus_tag="PF788_000890"
     CDS             12385..12840
                     /locus_tag="PF788_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HDG6303164.1"
                     /translation="MSTNKNDYEHMLFYFAYKTFITTADEIIEKYGMSRQHHRFLFFI
                     NKLPGITIKSLLEILEISKQGSHATLQKLKEQGLIIEKVLETDRRVKKLYSTDKGDQL
                     IAELNKAQDELLQNIYQQVGSDWYDVMEALAKGRPGFDFIKHLKDEKES"
     gene            complement(12943..13053)
                     /locus_tag="PF788_000891"
     CDS             complement(12943..13053)
                     /locus_tag="PF788_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303165.1"
                     /translation="MLGAWLTRSWYFLNAKYKPPTNVKITANFFIIQTPF"
     gene            complement(13123..14547)
                     /locus_tag="PF788_000892"
     CDS             complement(13123..14547)
                     /locus_tag="PF788_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HDG6303166.1"
                     /translation="MLSVKKATKFAVANLIIVSTVFSSVTPAIAQSDKSSKDESFAVG
                     NTKNPKNVIFLVGDGMGPSFNTAYRYYKNDPHAKEMTPTAFDSYLKGTNRTYSNDPKQ
                     NITDSAAGGTAFSSGHKTYNGAIGVDSNKQKVKTVLERAKEKGKSTGLVSTAELTDAT
                     PAAYAAHVTSRDDKNEIAKQFYKDKINGKHKVDVLLGGGAKYFGKSNGNLDKKFKKDG
                     YDLATNSKELSKSDKDKVLGLFADKNMPLAIDASKDEPSLADMQQSALSKLERNKKGF
                     FLMVEGASIDKSAHSNDITGVMSEMEGFEKAFDDAIQYAKKHKDTLVVATADHSTGGL
                     TIGKDKGYEWNPQPIKSMKHSGSYMTEKMAKGEDPEKVINEGYGFEFSQDDMKKVKKE
                     NKKLKRLLKKEKDEKSAEVETQTKALQHAIQKPVNDKSYTGWTSDGHTGEDVNTYAYG
                     PRSESFSGNIENTESAKIIFDIFK"
     gene            14745..14945
                     /locus_tag="PF788_000893"
     CDS             14745..14945
                     /locus_tag="PF788_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303167.1"
                     /translation="MILVMLSPLLIIFFIVLSILEERKRTKKKQLEKEKANTLNQNTN
                     DTESSNQEPSLQQDKEQKDNKG"
     gene            14971..15636
                     /gene="nsaR"
                     /locus_tag="PF788_000894"
     CDS             14971..15636
                     /gene="nsaR"
                     /locus_tag="PF788_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nisin susceptibility-associated two-component
                     system response regulator NsaR"
                     /protein_id="HDG6303168.1"
                     /translation="MKILIVEDDFVIAESLASELKKWNYGVIVVEQFDDILSIFNQNQ
                     PQLVLLDINLPTLNGFHWCQEIRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPF
                     NLSLTIAKIQALLRRTYDLSVANDSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILK
                     LLFQNEDKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLNTIGVNDFIITKKNVG
                     YKV"
     gene            15647..16534
                     /gene="nsaS"
                     /locus_tag="PF788_000895"
     CDS             15647..16534
                     /gene="nsaS"
                     /locus_tag="PF788_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nisin susceptibility-associated two-component
                     system sensor histidine kinase NsaS"
                     /protein_id="HDG6303169.1"
                     /translation="MTFLKSITQEIAIVIVIFALFGLMFYLYHLPLEAYLLALGVILL
                     LLLIFIGIKYLSFVKTISQQQQIENLENALYQLKNEQIEYKNDVESYFLTWVHQMKTP
                     ITAAQLLLERDEPNVVNRVRQEVIQIDNYTSLALSYLKLLNETSDISVTKISINNIIR
                     PIIMKYSIQFIDQKTKIHYEPCHHEVLTDVRWTSLMIEQLINNALKYARGKDIWIEFD
                     EQSNQLHVKDNGIGISEADLPKIFDKGYSGYNGQRQSNSSGIGLFIVKQISTHTNHPV
                     SVVSKQNEGTTFTIQFPDE"
     gene            16642..17397
                     /locus_tag="PF788_000896"
     CDS             16642..17397
                     /locus_tag="PF788_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303170.1"
                     /translation="MLLEVKHVKKVYGKGLNATTALNQMNLSVGAGEFVAIMGESGSG
                     KSTLLNLIASFDGLTEGDIIVDGAHLNNMKNKSKALYRQQMVGFVFQDFNLLPTMTNK
                     ENIMMPLILAGAKRKDIEQRVHQLAVQLHLEGFLNKYPSEISGGQKQRIAIARALVTK
                     PTILLADEPTGALDSKTSKALMMLFQEIHQLEQTILMVTHSNIDASYAERVIFIKDGR
                     LYHEIYRGEESQLAFQQRITDSLALVNGGSVNI"
     gene            17394..19394
                     /locus_tag="PF788_000897"
     CDS             17394..19394
                     /locus_tag="PF788_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303171.1"
                     /translation="MKLRLLWHIVRRQFITQRLVIIPFILAVSVLFMIEYTLVSIGLN
                     SYIKQKNDFLVPFIIIANFFMALLTFIFIFYANHFMMSQRRKEFSIFMTLGMTKKSMR
                     LIVVMETILQFVIISVVSIAGGYLLGAIFFLFIQKIMGSEVATLRYYPFDSVAMFITL
                     IIIAVLMGMLLIFNLFSINFQRPITYQHRSDSSVISRWLRYVLIVIGSAALYLGYFIA
                     LQQDTTFGAFFKIWIVIGLVIIGTYAFFVGISEIIISILQQVSKVYYHPRYFFVVVGM
                     RVRLKMNAVSLATITLLCTFLIVTLTMTLTTYRDMNHTITKLITNDYDLSFSDNSKSQ
                     IERQQTIENIKRDIQGSVNAKDFKVYETTLFRASLEKNRAYYKLKQASDDIPIDFIGN
                     EGAIFSRQSVMITAFTAQDYNRYHQNKLHLDNQSIGMITNVPIFKKQSKVGLNNEVFK
                     VKQLDAHALNLMMIQDSMVLIVKDNNQLQKVKGFYAHEQKNSTISINFNVFGKTKLTT
                     SQIQKLSKKYDASINSKSEMLMVWDRLTGGLIFVGGVVSIVLVIGIFLMMYYKQVSEA
                     YANQHNYDIMKKLGLDNGRIAKITRNQMTFLFAIPITVALIHTLISSNIVYTLLNMIG
                     INNHHIFLTSYVLAVIIISFLYMAMYKITSYIYAKVIHQQRN"
     gene            20053..20166
                     /locus_tag="PF788_000898"
     CDS             20053..20166
                     /locus_tag="PF788_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303172.1"
                     /translation="MNGILIKCLNIGGQYYLQTRMLSNVDNAEKIISRNSI"
     gene            20548..20808
                     /locus_tag="PF788_000899"
     CDS             20548..20808
                     /locus_tag="PF788_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303173.1"
                     /translation="MIIMRGYNGRYCSWTNTAIQCDYFNKVRQVKKDGKSDRLSNNIN
                     SNIIYRVLEKCITLYNVCSRCKRALILSEHSKKNIFNIKKAV"
     gene            20818..21315
                     /locus_tag="PF788_000900"
     CDS             20818..21315
                     /locus_tag="PF788_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDG6303174.1"
                     /translation="MNNRNVYDIEVSDYKGLTYKLEAFRGKVILVVNTATECIYSEQL
                     KKLETLFQKYKDRGFVVLSFPNNNFDNRQPGSNEEILKISREKFGVTFPVLAKISVNG
                     NDEHPLFTHLKNEQPGIFGSPIKWNFTKFIIDRQGNVVNRFLPMEDPLDISTNIEILL
                     QESSS"
     gene            complement(21423..21515)
                     /locus_tag="PF788_000901"
     CDS             complement(21423..21515)
                     /locus_tag="PF788_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303175.1"
                     /translation="MSVINAYSNASLLFFIYLLFIMYQISLSVK"
     gene            21710..23590
                     /locus_tag="PF788_000902"
     CDS             21710..23590
                     /locus_tag="PF788_000902"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     flavoprotein subunit"
                     /protein_id="HDG6303176.1"
                     /translation="MKLNTSNSPFTEKQVTEINNLLQTLTESQQQWLSGFLLANSNDT
                     TSDSNQQQLETEVWQQSQISEEQATSTTYMLQNKEPHIEANQRHVTVLYGSESGNAMR
                     LAEIFSERLSDIGHQVVLMSMDEYDTTNIAQLEDLFIITSTHGEGEPPDNAWDFFEFL
                     EDDNAPNLNHVRYSVLALGDQTYEFFCQAGKDVDVLLENLGAERICKRVDCDIDYEED
                     AEKWMADIINIIDTTSEGIQSESVISESIKSAKEKKYSKSNPYQAEVLANINLNGTDS
                     NKETRHIEFLLDDFSESYEPGDCIVALPQNDPELVEKLIFMLGWDPQSPVPINDHGDT
                     VPIVEALTSHFEFTKLTLPLLKNADIYFDNEELSERIQDESWAREYVINRDFIDLITD
                     FPTIELQPENMYQILRKLPPREYSISSSFMATPDEVHITVGTVRYQAHGRERKGVCSV
                     HFAERIKPGDIVPIYLKKNPNFKFPMKQDIPVIMIGPGTGIAPFRAYLQEREELGMTG
                     KTWLFFGDQHRSSDFLYEEEIEEWLENGNLTRVDLAFSRDQEHKEYVQHRIMEESKRF
                     NEWIEQGAAIYICGDEKCMAKDVHQAIKDVLVKERHISQEEAELLLRQMKQQQRYQRD
                     VY"
     gene            23653..24258
                     /locus_tag="PF788_000903"
     CDS             23653..24258
                     /locus_tag="PF788_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HDG6303177.1"
                     /translation="MNMPLMIDLTNKNVVIVGGGVVASRRAQTLNQYVEHMTVISPTI
                     TEKLQNMVDNGVVIWKEKEFEPSDIVDAYLVIAATNEPRVNEAVKKALPEHALFNNVG
                     DASNGNVVFPSALHRDKLTISVSTDGASPKLTKSIMAELEALYPPSYSSYIDFLYTCR
                     QKIKVLDITYNEKQQLLSQIVSQEYLNHDKQAQFLAWLDVR"
     gene            24334..24429
                     /locus_tag="PF788_000904"
     CDS             24334..24429
                     /locus_tag="PF788_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303178.1"
                     /translation="MGGFVNSLIMKDLSDNDMRFKYEYYNREKDT"
     gene            24751..26121
                     /locus_tag="PF788_000905"
     CDS             24751..26121
                     /locus_tag="PF788_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HDG6303179.1"
                     /translation="MNSDNMWLTVMGLIIIISIVGLLIAKKINPVVGMTIIPCLGAMI
                     LGYSVTDLVGFFAKGLDQVINVVIMFIFAIIFFGIMNDSGLFKPLVKRLILMTRGNVV
                     IVCAMTALIGTIAQLDGAGAVTFLLSIPALLPLYKALNMNKYLLILLLALSAAIMNMV
                     PWGGPMARVAAVLKAKSVNELWYGLIPIQIIGFILVMLFAVYLGFKEQKRIKKAIERN
                     ELPQTQDIDVHKLVEVYERDQDVRFPVKGRARTKSWIKWVNTALTLAVILSMLINIAP
                     PEFAFMIGVSLALVINFKSVDEQMERLRAHAPNALMMAAVIIAAGMFLGVLNETGMLK
                     AIATNLIKVIPAEVGPYLHIIVGLLGVPLDLLTSTDAYYFAVLPIVEQTAGQFGVPSV
                     STAYSMVIGNIIGTFVSPFSPALWLAIGLAEANMGTYIKYAFFWIWGFAIVMLVIAML
                     MGIVTI"
     gene            26368..28218
                     /gene="nrdD"
                     /locus_tag="PF788_000906"
     CDS             26368..28218
                     /gene="nrdD"
                     /locus_tag="PF788_000906"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDG6303180.1"
                     /translation="MNQIEEALTGLISKDPAIVNENANKDSDTFSTMRDLTAGIVSKS
                     YALNHLLPKHVADAHQRGDIHFHDLDYHPFQPLTNCCLIDAKNMLHNGFEIGNANVTS
                     PKSIQTASAQLVQIIANVSSSQYGGCTVDRVDELLSTYARHNEEQHRNIAKQFVKESE
                     IDRYVDQQVTKDINDAIESLEYEINTLYTSNGQTPFVTLGFGLGTDHLSRKIQQAILN
                     TRIKGLGKDRTTAIFPKLVFSIKKGTNFSPQDPNYDIKQLALKCSTKRMYPDILNYDK
                     LVEILGDFKAPMGCRSFLPSWKDAEGHFENNGRCNLGVVTLNLPRMALESAGNMTKFW
                     EIFYERIDVLHDALLYRINRLKDAVPNNAPILYKSGAFNYKLKETDDVAELFKNKRAT
                     ISMGYIGLYETATVFYGPDWETSQEAKAFTLEILKEMKRYQTKWTELYDIWFSIYSTP
                     SESLTDRFCRLDQERFGDIKDITDKGYYQNSFHYDVRKDVTPFEKLDFEKDYPYYASG
                     GFIHYCEYPKLQHNLKALEAVWDYSYDKVGYLGTNIPIDHCYECDYDGDFEATEKGFK
                     CPNCGNDNPKTVDVVKRTCGYLGNPVQRPVIKGRHKEICARVKHMKAPKE"
     gene            28215..28751
                     /gene="nrdG"
                     /locus_tag="PF788_000907"
     CDS             28215..28751
                     /gene="nrdG"
                     /locus_tag="PF788_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDG6303181.1"
                     /translation="MILLDIKQGQGYIAKIESNSFVDGEGVRCSVYVSGCPFNCVGCY
                     NKASQKFRYGEKYTDEILAEILDDCDHDYISGLSLLGGEPFCNLDITLNLVKAFRARF
                     GNTKTIWVWTGFLYEYLANDCTERRELLSYIDVLVDGLFIQHLFKPDLPYKGSLNQRI
                     IDVQQSLSHARMIEYIVS"
     gene            28851..28961
                     /locus_tag="PF788_000908"
     CDS             28851..28961
                     /locus_tag="PF788_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303182.1"
                     /translation="MIEYDLTIILIPILKVAYPFFKKVEREKWYFSGKEV"
BASE COUNT        10483 a         4201 c         5378 g         8976 t
ORIGIN      
        1 gcattaacct tgttgagcac tttatcacca gcagcattag cgattgattc aaaaaataaa
       61 ccagctaatt ctgatattaa atttgaggtg actcaaaaga gtgatgcggt caaagcatta
      121 aaagaattgc ctaaatccga aaatgtaaaa aatatttatc aagattacgc tgttactgat
      181 gtaaaaactg ataaaaaagg atttacgcat tatacattgc aaccgagtgt tgatggtgtt
      241 catgcacctg acaaagaagt gaaagtacac gcagacaaat caggaaaagt cgttttaatc
      301 aatggggata ctgatgcgaa gaaagtaaag ccaacgaata aagtgacatt aagtaaagat
      361 gacgcagccg acaaagcatt taaagcagtt aagattgata agaataaagc gaaaaatctt
      421 aaagataaag tcattaaaga aaacaaagtt gaaatcgatg gtgacagtaa taaatacgtt
      481 tataatgttg agttaattac agtgacacca gaaatttcac attggaaagt taaaattgat
      541 gctcaaactg gcgaaatttt agaaaaaatg aacttagtta aagaagctgc agaaactggt
      601 aaaggaaaag gtgtacttgg cgatacaaaa gatatcaata tcaatagtat tgacggtgga
      661 tttagcctag aagatttaac gcatcaaggt aaattatcag catttagctt taatgatcaa
      721 acaggtcaag caacattgat tactaatgaa gatgaaaact tcgtaaaaga tgagcaacgt
      781 gctggcgtag atgcaaatta ttacgctaaa caaacatatg attattacaa agacacattt
      841 ggtcgtgaat catatgacaa ccaaggtagt ccaattgttt cattaacgca tgttaataac
      901 tacggtggtc aagataacag aaataatgcc gcatggatcg gtgacaaaat gatctatggt
      961 gatggtgatg gtcgcacatt cacaagttta tcgggtgcaa atgacgtagt agcacacgaa
     1021 ttaacacacg gtgtgacaca agagacagcg aacttagaat ataaggacca gtcaggcgct
     1081 ctaaatgaaa gcttttcaga tgtttttgga tactttgtag atgacgagga tttcttaatg
     1141 ggtgaagatg tctacacacc tggaaaagag ggagacgctt tacgcagcat gtcaaaccca
     1201 gaacaatttg gtcaaccagc tcatatgaaa gactatgtat tcactgaaaa agataatggt
     1261 ggcgtacata cgaattctgg aattccaaat aaagcagctt ataacgtgat tcaagcaata
     1321 gggaaatcta aatcagaaca aatttactac cgagcattaa cggaatactt aacaagtaat
     1381 tcaaacttca aagattgtaa agatgcatta taccaagcgg ctaaagattt atatgacgag
     1441 caaacagctg aacaggtgta tgaagcatgg aatgaagtag gcgtggagta aaaatatata
     1501 aacaagaaga agtaatgtta aacacttata aataattaaa ttttaaatac agcttatata
     1561 tggggtatac ctacattgat aattgacttt gtaggtatac cctctctttg taattagatg
     1621 agaggagtgt gagggttgtc tgccgaaaga ctactcggca gtctaaaatc attacaagta
     1681 gtagatatgt gataattaaa tgctgactta gaatacaaaa ttcattttaa aagttgtcac
     1741 aaaaaattta catgtatttt tattatattt tgcaaaacaa agtgttaaat tataaatgaa
     1801 acatgcatga atttattttt taatacaaga aacgtaacta ccaaaggagt ttacaatatg
     1861 aagaaaagta aacgattaga aattgtttct acaatagtta aaaagcataa gatttataaa
     1921 aaagaacaaa tcatttcata tattgaagaa tattttggtg taagatatag tgcaacaaca
     1981 attgctaaag acttgaagga actaaatata tatcgtgtcc ctatcgattg tgagacatgg
     2041 atttataaag ctattaataa tcaaacagaa caagagatga gagaaaagtt tagacactat
     2101 tgtgaacatg aagttctaag ttcaatcatc aatggttcat acattatcgt caaaacctca
     2161 cctggtttcg cccaaggcat aaactatttt atcgatcagc taaatataga agagatatta
     2221 ggtacggtga gtggaaatga cactacatta atcttaactg cctcaaatga tatggcagaa
     2281 tacgtatatg caaaattatt taaatagaca tgtatcaaat gaataataaa aatttgtttc
     2341 gtatcacgtg tactcaagtt agttaccaaa tattaacttg tgtacgcgtt tttttatgga
     2401 aagaaagaat tcatagtcat tcaattgact gtataaaaaa ctttatacaa catgttttta
     2461 tgggtgtttt tgaataaaaa atgtatattt tgacccaaaa tgcctttatt tatgtataaa
     2521 aatccattat tatgtattgt ataacaaaaa gatatgaaat tttcgacttt ctttatgtga
     2581 atataatcac atgtaagcgt ttgaagattg tctatactct aaatgaattc aaagataaaa
     2641 ggaggaaata gacatgacag atggtccaat taaagtaaat agcgaaattg gagctttaaa
     2701 aactgtgtta cttaagcgtc ctggaaaaga attagaaaat ttagtacctg attatttaga
     2761 tggattacta tttgatgata ttccatattt agaagtagct caaaaagagc atgaccattt
     2821 tgcgcaggtg ctaagagaag agggtgttga agtactttac cttgagaagt tagcagctga
     2881 aagtattgaa aatcctcaag taagaagtga atttattgat gatgtattag cagagtctaa
     2941 aaaaacaata ttaggtcatg aagaagaaat taaggcatta tttgcgacac tttctaatca
     3001 agaacttgta gataaaataa tgtcaggggt acgtaaggaa gaaattaatc cgaaatgtac
     3061 acatctagta gagtatatgg atgataagta tccattctat ttagatccaa tgccaaacct
     3121 ttattttact agagatccac aagcctcaat aggacacggt ataacaatca atcggatgtt
     3181 ctggagagca cgacgacgag aatcaatatt tattcaatat attgtaaagc atcatcctag
     3241 atttaaagat gcgaatattc caatctggtt agatcgagat tgcccattca atattgaagg
     3301 cggcgatgaa cttgttttat ctaaagatgt cttggctata ggcgtttcag aacgtacatc
     3361 tgcacaagct attgaaaagt tagcgcgacg tatttttgaa aatccgcagg cgacgtttaa
     3421 aaaagtagta gcaattgaaa ttccaactag tcgaactttt atgcacttag atacagtatt
     3481 tacaatgata gattatgaca aatttacaat gcattcagcc attttaaagg cagaaggcaa
     3541 tatgaatata tttattattg aatatgatga cgtaaataaa gatattgcca tcaaacaatc
     3601 tagtcattta aaagatactt tagaagacgt actaggtata gatgatatcc aattcattcc
     3661 aacaggaaat ggtgatgtca ttgatggtgc tagagagcaa tggaatgatg gctcaaatac
     3721 attatgtata agaccaggcg ttgtagtgac ttacgataga aactatgtat cgaatgattt
     3781 attgagacaa aaaggcatta aagtcattga aatatctggt agcgagttgg tacgtggacg
     3841 tgggggccct agatgtatga gtcaaccatt attcagagaa gacatttaac gtaataaatt
     3901 atagaaacga gggtgaaaat aatgacagaa attcaaaaac cgtatgattt aaaaggcaga
     3961 tcattattaa aagaaagtga ttttaccaaa gcagaattcg aaggacttat tgattttgca
     4021 attacattaa aagagtataa gaaaaacggt attaagcatc actacttatc tggaaaaaat
     4081 attgcactac tattcgaaaa gaattcgacg agaacgcgtg ctgcgtttac agttgcgtct
     4141 attgatttag gtgcgcatcc agaattttta ggaaaaaatg atattcaatt aggcaaaaaa
     4201 gaatctgtag aggatactgc gaaagtatta ggtagaatgt tcgatggtat tgaattccgt
     4261 ggtttttcac aacaagctgt tgaagattta gcgaagttct ctggtgtagc ggtgtggaat
     4321 ggattaacag acgattggca tcctacacaa atgttagctg attttatgac aataaaagag
     4381 aattttggat atctagaagg aataaactta acttacgttg gagatggacg taataatatt
     4441 gcgcattcat taatggtagc aggtgctatg ttaggtgtta atgtaagaat ttgtacacct
     4501 aaatcattaa atccaaaaga ggcatatgtt gatattgcaa aagaaaaagc gagtcaatat
     4561 ggtggttcag tcatgattac ggataatatt gcagaagcag ttgaaaatac agatgctata
     4621 tatacagatg tttgggtatc gatgggtgaa gaaagtgaat ttgaacaacg tattaattta
     4681 ttaaaagact atcaagtgaa tcaacagatg tttgatttaa caggtaaaga ttcaacgata
     4741 ttcttacatt gtttaccagc attccatgat acaaatacac tttatggaca agaaatttat
     4801 gaaaaatatg gattagctga aatggaagtt acagaccaaa tctttagaag tgaacattca
     4861 aaagtgtttg atcaagctga aaatagaatg catacaatta aggcagtaat ggcagcaaca
     4921 ttggggagtt aatcactaaa tggaacgata tgaatatgat gtgtctgatg atataagtgt
     4981 catgtacaga cacctcatat tggtattaaa ggagaaatga atatgaacga atcaggagat
     5041 aacaaactca gtaaatcttc tttaattgga ctagttatag gatccatgat tggtggcggt
     5101 gcgttcaata taatgtctga tatgggcggt aaagccggtg gattagccat tattattggt
     5161 tggattatta cagctatagg aatgatttca ttagcgttcg tatttcaaaa tttaaccaat
     5221 gaacggccgg agctagacgg tggtatttat agttatgctc aagcaggatt tggcgatttt
     5281 gtaggattta tcagtgcttg gggatattgg ttctcagcgt ttttaggcaa tgttgcctat
     5341 gcaacactat tgatgtcagc agtaggtaac tttttcccga tttttaaagg aggcaacaca
     5401 ttaccaagtg ttattgtcgc ctcgttacta ctctggggtg tccatttctt gattttaaaa
     5461 ggcgttgaaa cagcagcatt tatcaatagt attgttactg ttgcaaagtt aataccgatt
     5521 ttacttgtaa tcatatgcat gataattgca ttcaattttg acacttttaa aacaggcttt
     5581 ttcagtatga cgtcagaggg tgtattgcca tttagttggg cgagcacaat gagccaagtt
     5641 aaaagtacga tgctagtgac agtttgggtg tttatcggta tcgaaggtgc agtaattttt
     5701 tctagtagag ctaaaaataa aaaagatgta ggtagtgcca cggttatagg acttatatca
     5761 gttttaatta tctatttctt attaactgta ttagctcaag gcgtgatttt gcaaaatcat
     5821 atttcgcaat tagattcgcc aagtatggca caggtgcttg caactattgt aggtggttgg
     5881 ggatctacac ttgtaaatat tggtttaatt atttcggtac taggtgcatg gttaggatgg
     5941 acactgcttg ctggtgaatt acctttcatt gttgcaaaag atggattatt tccaaaatgg
     6001 tttgctaaag aaaataaaaa tggagcacct gtaaatgcac tgcttattac caatatatta
     6061 gtacaattat ttttaataag tatgctattt acacagagtg cgtatcaatt tgcattttca
     6121 ctagcatcaa gtgctatttt atacccttac atgttcagtg cattttacca agttaaatac
     6181 actttagagc atcgacagca agcaactact aaacaatgga cgattggtat catagcctca
     6241 atttatgcta tatggcttat atatgcagca ggtatcaatt acttattatt gacgatgtta
     6301 ctttatattc cagctcttct tgtttataca atcgttcaaa agaataatca gacacgtttg
     6361 attaaatcag actatattct ttttatgatt attatcgtac ttgcagttat cgggttaatt
     6421 aagttattga tgggaacgat aaatgttttt taaaaggagc gacaaaaata tgaaagagaa
     6481 aattgtcatt gcattaggcg gtaatgcgat acagacaaca gaagcaacag ctgaagcaca
     6541 acaaacagct attagatgtg cgatgcaaaa ccttaaacct ttatttgatt caccagcgcg
     6601 tattgtcatt tcacatggta atggtccaca aattggaagt ttattaatcc aacaagctaa
     6661 atcgaacagt gacacaacgc cggcaatgcc attggatact tgtggtgcaa tgtcacaggg
     6721 tatgataggc tattggttgg aaactgaaat caatcgcatt ttaactgaaa tgaatagtga
     6781 tagaactgta ggcacaatcg ttacacgtgt ggaagtagat aaagatgatc cacgatttga
     6841 taacccaact aaaccaattg gtccttttta tacgaaagaa gaagttgaag aattacaaaa
     6901 agaacagcca gactcagtct ttaaagaaga tgcaggacgt ggttatagaa aagtagttgc
     6961 gtcaccacta cctcaatcta tactagaaca ccagttaatt cgaactttag cagacggtaa
     7021 aaatattgtc attgcatgcg gtggtggcgg tattccagtt ataaaaaaag aaaataccta
     7081 tgaaggtgtt gaagcggtta tagataaaga ttttgctagt gagaaattag caacgctgat
     7141 tgaagcagat accttaatga ttcttacgaa tgtagaaaat gtatttatta actttaatga
     7201 acctaatcaa caacaaatcg atgatattga tgtagcaaca ctgaaaaaat acgcggcaca
     7261 aggtaagttt gtggaaggat cgatgttgcc aaaaatagaa gctgcgatac gatttgttga
     7321 aagtggggaa aacaaaaaag ttatcattac caatttagag caggcatacg aagctttgat
     7381 tggtaataaa ggtacacaca ttcacatgta gcactttatc acgcgacaaa acattaaata
     7441 tgtttctccg ttgattcaaa tgaaaaagtt gtctgctgac actttgcaag gtttgaagga
     7501 gtttaactta tgacagaaaa ctttattttg ggtagaaata ataaattaga acatgaacta
     7561 aaggcattag cagattacat taatatacca tatagtatat tacaaccata tcaaagtgaa
     7621 tgttttgtca gacattatac gaaaggccaa gttatttatt tttcgccaca agaaagtagc
     7681 aatatttact ttttaattga aggtaacatt attagagaac attacaatca aaatggagat
     7741 gtatatcgtt attttaataa agagcaagta ttatttccaa tcagtaactt atttcatccg
     7801 aaagaggtta acgaattgtg tacagcatta accgattgta cagttcttgg attgcctaga
     7861 gaattgatgg cctttttgtg caaagctaat gatgatatat ttttgacact ttttgcatta
     7921 ataaatgata atgagcagca acacatgaac tataacatgg cattaacaag taaatttgct
     7981 aaagatcgaa ttatcaaatt gatatgccat ctatgtcaga cagtaggata cgatcaagat
     8041 gaattttatg aaatcaaaca gtttttaact attcaactca tgagtgatat ggctgggatt
     8101 tcccgggaaa cagctggtca tattattcat gaacttaaag atgaaaaact tgttgttaaa
     8161 gatcataaaa attggttagt aagcaaacat ttattcaatg atgtatgtgt ttaatataca
     8221 atgtaaaatg aataagttga acatgaggtc taacgtacat ttatacgtta ggcctttttt
     8281 gctagcatga tgaataattt aaaatgttag ttaaatttga ttgttgaaat tacagtaaaa
     8341 tttaaggtga tgaaaaattt agaacttcta agtttttgaa aagtaaaaaa tttgtaatag
     8401 tgtaaaaata gtatattgat ttttgctagt taacagaaaa ttttaagtta tataaatagg
     8461 aagaaaacaa attttacgta atttttttcg aaaagcaatt gatataattc ttatttcatt
     8521 atacaattta gactaatcta gaaattgaaa tggagtaata tttttgaaaa aaagaattga
     8581 ttatttgtcg aataagcaga ataagtattc gattagacgt tttacagtag gtaccacatc
     8641 agtaatagta ggggcaacta tactatttgg gataggcaat catcaagcac aagcttcaga
     8701 acaatcgaac gatacaacgc aatcttcgaa aaataatgca agtgcagatt ccgaaaaaaa
     8761 caatatgata gaaacacctc aattaaatac aacggctaat gatacatctg atattagtgc
     8821 aaacacaaac agtgcgaatg tagatagcac aacaaaacca atgtctacac aaacgagcaa
     8881 taccactaca acagagccag cttcaacaaa tgaaacacct caaccgacgg caattaaaaa
     8941 tcaagcaact gctgcaaaaa tgcaagatca aactgttcct caagaagcaa attctcaagt
     9001 agataataaa acaacgaatg atgctaatag catagcaaca aacagtgagc ttaaaaattc
     9061 tcaaacatta gatttaccac aatcatcacc acaaacgatt tccaatgcgc aaggaactag
     9121 taaaccaagt gttagaacga gagctgtacg tagtttagct gttgctgaac cggtagtaaa
     9181 tgctgctgat gctaaaggta caaatgtaaa tgataaagtt acggcaagta atttcaagtt
     9241 agaaaagact acatttgacc ctaatcaaag tggtaacaca tttatggcgg caaattttac
     9301 agtgacagat aaagtgaaat caggggatta ttttacagcg aagttaccag atagtttaac
     9361 tggtaatgga gacgtggatt attctaattc aaataatacg atgccaattg cagacattaa
     9421 aagtacgaat ggcgatgttg tagctaaagc aacatatgat atcttgacta agacgtatac
     9481 atttgtcttt acagattatg taaataataa agaaaatatt aacggacaat tttcattacc
     9541 tttatttaca gaccgagcaa aggcacctaa atcaggaaca tatgatgcga atattaatat
     9601 tgcggatgaa atgtttaata ataaaattac ttataactat agttcgccaa ttgcaggaat
     9661 tgataaacca aatggcgcga acatttcttc tcaaattatt ggtgtagata cagcttcagg
     9721 tcaaaacaca tacaagcaaa cagtatttgt taaccctaag caacgagttt taggtaatac
     9781 gtgggtgtat attaaaggct accaagataa aatcgaagaa agtagcggta aagtaagtgc
     9841 tacagataca aaactgagaa tttttgaagt gaatgatata tctaaattat cagatagcta
     9901 ctatgcagat ccaaatgact ctaaccttaa agaagtaaca gaccaattta aaaatagaat
     9961 ctattatgag catccaaatg tagctagtat taaatttggt gatattacta aaacatatgt
    10021 agtattagta gaagggcatt acgacaatac aggtaagaac ttaaaaactc aggttattca
    10081 agaaaatgtt gatcctgtaa caaatagaga ctacagtatt ttcggttgga ataatgagaa
    10141 tgttgtacgt tatggtggtg gaagtgctga tggtgattca gcagtaaatc cgaaagaccc
    10201 aactccaggg ccgccggttg acccagaacc aagtccagac ccagaaccgg aaccaagccc
    10261 agacccggat ccggattcgg attcagacag tgactcaggc tcagacagcg actcaggttc
    10321 agatagcgac tcagaatcag atagcgattc ggattcagac agtgattcag attcagacag
    10381 cgactcagaa tcagatagcg attcagaatc agatagcgac tcagattcag atagcgattc
    10441 agattcagat agcgattcag attcagatag cgattcggat tcagacagtg attcagattc
    10501 agacagcgac tcagaatcag atagcgactc agaatcagat agtgagtcag attcagacag
    10561 tgactcggac tcagacagtg attcagactc agatagcgat tcagactcag atagcgattc
    10621 agactcagac agcgattcag attcagacag cgactcagat tcagacagcg actcagactc
    10681 agacagcgac tcagattcag atagcgattc agactcagac agcgactcag actcagacag
    10741 cgactcagac tcagatagcg actcagattc agatagcgat tcagactcag acagcgactc
    10801 agattcagat agcgattcgg actcagacag cgattcagat tcagacagcg actcagactc
    10861 ggatagcgat tcagattcag atagcgattc ggattcagac agtgattcag attcagacag
    10921 cgactcagac tcggatagcg actcagactc agacagcgat tcagactcag atagcgactc
    10981 agactcggat agcgactcgg attcagatag cgactcagac tcagatagtg actccgattc
    11041 aagagttaca ccaccaaata atgaacagaa agcaccatca aatcctaaag gtgaagtaaa
    11101 ccattctaat aaggtatcaa aacaacacaa aactgatgct ttaccagaaa caggagataa
    11161 gagcgaaaac acaaatgcaa ctttatttgg tgcaatgatg gcattattag gatcattact
    11221 attgtttaga aaacgcaagc aagatcataa agaaaaagcg taaatacttt tttaggccga
    11281 atacatttgt attcggtttt tttgttgaaa atgattttaa agtgaattga ttaagcgtaa
    11341 aatgttgata aagtagaatt agaaaggggt catgacgtat ggcttatatt tcattaaact
    11401 atcattcacc aacaattggt atgcatcaaa atttgacagt cattttaccg gaagatcaaa
    11461 gcttctttaa tagcgataca actgttaaac cattaaaaac tttaatgttg ttacatggat
    11521 tatcaagtga tgaaacgaca tatatgagat atacaagcat agaaaggtat gcgaatgaac
    11581 acaaattagc tgtgattatg cccaatgtgg atcatagcgc atatgctaac atggcatatg
    11641 gtcatagcta ttatgattat attttggaag tgtatgatta tgttcatcaa atatttccac
    11701 tttccaaaaa gcgtgatgac aattttatag caggtcactc tatgggagga tatggcacaa
    11761 ttaaatttgc attaacacaa ggggataaat ttgccaaagc tgtaccatta tctgctgtgt
    11821 ttgaagcgca aaatttaatg gatctagagt ggaatgattt ttcaaaagag gccataattg
    11881 gcaatctttc aagtgttaaa ggaactgaac atgatccgta ttacttgcta gacaaagctg
    11941 tagctgaaga taaacaaatt ccaaaattgc tcattatgtg tggtaaacaa gactttttat
    12001 atcaagacaa cttagatttt atcgattatt tatcacgcat aaatgttcct tatcaatttg
    12061 aagatggacc aggagatcat gattatgcat attgggatca agcgattaag cgtgctataa
    12121 catggatggt gaatgattaa ttatttcttg gaaaatatgt ggctgcatta aatacacaga
    12181 gtgagagata caaactattt acgcacgact aacatttcta agtgtttaaa ttatttttgt
    12241 attaatatga ttggcgcaat ttgctgatac acaaaaatgt ttctcgtgaa acttagattt
    12301 agcttatagt tttatcatca tttgtatgac ttacattata aattttatta taatgaggtt
    12361 aacgctttga aaggagtcat catcatgtcg accaataaaa acgattatga gcatatgttg
    12421 ttttattttg catataaaac ctttattact accgctgatg aaattataga gaagtatggt
    12481 atgagtcgtc agcatcatcg ttttttgttt tttatcaata aattacctgg tattactatt
    12541 aaatcattac tagaaatatt agaaatttct aaacaaggat cacatgcaac acttcaaaaa
    12601 ttaaaagagc aaggtctcat tattgaaaaa gttttagaga ctgatcgacg tgtcaaaaaa
    12661 ttatattcga cggataaagg cgatcaactc attgctgaat tgaacaaggc gcaagatgaa
    12721 ttattgcaaa atatatatca acaagtcggt tcggattggt atgatgtgat ggaagcattg
    12781 gctaaagggc gacctggctt tgattttatt aagcatttga aagatgaaaa agaaagctag
    12841 catcagaaat gttaaaaatc ttcgcattct taaatttaaa aaatatgtca aaaagtgtat
    12901 aataaaaaca tataatttaa ttgaactcag tttcaacaca tcttagaaag gagtttgaat
    12961 gatgaaaaaa ttagcagtta ttttaacatt agttggcggt ttatacttcg catttaaaaa
    13021 ataccaagaa cgtgttaacc aagcacctaa cattgagtac taaattaaac cataaaaaat
    13081 tcccgaacac cttgttatag tgctcgggaa tttttttatg ctttacttga atatatcaaa
    13141 tattattttt gcgctttctg tattttcgat attaccacta aatgattctg atctaggtcc
    13201 gtaagcgtag gtattaacat cctcgcctgt atgtccatcg gaagtccacc ctgtataaga
    13261 tttatcattt actggcttct gaatagcgtg ttgtagggct tttgtttgcg tttctacttc
    13321 tgcggatttt tcgtcttttt cttttttaag tagtcttttt agctttttat tctctttttt
    13381 aacctttttc atatcatctt gtgaaaattc aaatccataa ccttcattaa taactttttc
    13441 agggtcttca cctttagcca ttttttctgt catatatgat ccagagtgtt tcatagattt
    13501 aatcggttga ggattccatt cgtatccttt atctttacca attgttagac caccagtaga
    13561 gtgatctgct gttgcaacga caagtgtatc tttatgtttc ttagcatatt gaatggcgtc
    13621 atcgaatgct ttttcaaaac cttccatttc agacataacg cctgtaatat cgttggaatg
    13681 cgctgattta tctatagaag caccttcgac cattaaaaag aatccttttt tattgcgctc
    13741 aagcttacta agtgcacttt gttgcatatc agctaatgat ggttcgtctt tagaagcatc
    13801 tattgcaagt ggcatatttt tatctgcaaa caaaccaaga actttatctt tatcagattt
    13861 tgataactcc ttactgttcg tggcaaggtc gtaaccatct tttttgaatt ttttatctaa
    13921 attgccatta cttttaccga aatatttagc gccgccgcct aataaaacat caactttatg
    13981 ctttccgttg attttatctt tataaaattg tttagcgatt tcgtttttat catctctaga
    14041 agtcacgtgt gcagcatatg ctgctggtgt tgcatctgtt aattcagctg ttgaaacaag
    14101 accagtcgac ttaccttttt cttttgcacg ttcaagcacc gtctttactt tctgcttgtt
    14161 actgtcaaca ccgatggcac cattatatgt cttatgacca gaactaaagg ctgttccgcc
    14221 agctgcagaa tcagtaatat tctgttttgg gtcatttgaa tatgtacgat ttgtgccttt
    14281 taaatatgaa tcaaaagcag taggggtcat ttctttagca tgcggatcat ttttataata
    14341 acgataagct gtgttaaatg atggacccat gccatcgcca actaaaaaga taacattttt
    14401 tggattttta gtattaccaa ccgcgaaact ttcatcttta gaacttttat cggattgcgc
    14461 aattgcaggt gtgacagaac taaaaaccgt tgacacgata ataaggttag caactgcaaa
    14521 ttttgtggct tttttaactg ataacataag acatcctcct gagtatatga ctatgtcttc
    14581 agtgtaaaag aggaattttg agcaattatg tagttttagt taaaaatatg taaacagagt
    14641 gatttagaat aacaaaaaat gaatatatat gacaatttgt tatagaaagc gttagaatag
    14701 aagcgtgtga aaatatagaa ttaaatataa tttgaggtgg aaaaatgata ctagtaatgt
    14761 tatctccatt attaatcata ttctttatag tgttgtctat tttagaagag cgtaaacgta
    14821 cgaagaaaaa gcaactcgag aaagaaaaag caaatacact aaatcaaaat acaaatgaca
    14881 cggaaagttc aaatcaagag ccgtcattgc agcaggataa agaacaaaaa gataacaaag
    14941 gataattcaa ttgaaggaag aagattatag atgaaaatat taattgttga agatgatttt
    15001 gttatagcag agagtttagc atctgaactt aaaaaatgga attacggtgt tattgtcgtt
    15061 gaacaatttg atgatatact gtctatcttt aaccaaaatc aacctcagct tgtattgcta
    15121 gatattaatt tgccaacgtt aaatggtttt cattggtgtc aagaaatccg aaaaacatct
    15181 aatgtgccaa ttatatttat tagttcccgt attgataata tggaccaaat tatggcaata
    15241 caaatggggg gagatgattt tatcgaaaag ccatttaact tgtcattaac gattgccaaa
    15301 attcaagcat tattgagacg aacttatgac ttgtcagtag ctaatgattc attgacggtt
    15361 aaaggttgta cattaatatt agatgaagca aaagtcgtgt atcaagaaca aaacatacag
    15421 ctatctttga ctgaattaca aatattaaag ttattatttc aaaatgaaga taaatatgta
    15481 agtagaactg ctttaattga aaaatgttgg gaatcagaaa acttcataga tgataacaca
    15541 ttagctgtta acatgacgcg cctgcgtaaa aaattaaata ctattggcgt taatgatttt
    15601 atcattacaa agaaaaatgt cggatataaa gtatagggtg aatgcaatga cctttcttaa
    15661 aagtattact caggaaatag caatagtcat agttattttt gctttgtttg gcttaatgtt
    15721 ttacctgtat catttgccat tagaagcata tttactagca cttggcgtta ttttattatt
    15781 attactcata ttcataggta ttaaatattt aagttttgta aaaactataa gccaacaaca
    15841 acaaattgaa aacttagaaa atgcgttgta tcagcttaaa aatgaacaaa ttgaatataa
    15901 aaatgatgta gagagctact ttttaacatg ggtacatcaa atgaaaacac ccattactgc
    15961 agcacaactg ttacttgaaa gagatgagcc taatgttgtt aatcgtgttc gtcaagaggt
    16021 tattcaaatt gataactata caagtttagc acttagttat ttaaagttat taaatgaaac
    16081 ttctgatatt tctgtcacta aaatttcgat taataatatc attcgcccaa ttattatgaa
    16141 atattcaata cagtttattg atcaaaaaac aaaaatccat tatgaacctt gtcatcacga
    16201 agtattaact gacgttagat ggacctcttt aatgatagaa caattaataa ataatgcact
    16261 taagtatgcg agaggtaaag atatatggat tgaatttgat gagcaatcca atcaattaca
    16321 cgtaaaagat aatggtatcg gtattagtga agcggacttg cctaaaatat ttgataaggg
    16381 ctattcaggt tataatggcc agcgccaaag taactcaagt gggattggtt tatttatcgt
    16441 aaaacaaatt tcaacacaca caaaccatcc tgtttcagtc gtatctaaac aaaatgaggg
    16501 tacaacattt acgattcaat ttccagatga ataaaaactt tcaatattgt aagtatacta
    16561 gtaacatttt tttactaatt taaatgttat tagtattttt ttgttttaat atagaactaa
    16621 caaagaaatg aggtgcatgc catgttgcta gaagtgaaac atgtaaaaaa ggtttatggt
    16681 aaaggtttga atgctacgac agcacttaat caaatgaatt tatcagttgg agctggtgaa
    16741 tttgttgcaa ttatgggtga gtctgggtca gggaagtcta cactactaaa tttaattgct
    16801 tcttttgatg gactaactga aggtgacatt attgtggatg gcgcacattt aaataatatg
    16861 aaaaataaaa gtaaagcatt gtatcgtcaa caaatggtag gttttgtttt tcaagatttt
    16921 aatcttttac caacaatgac gaataaagaa aatataatga tgccattaat tttagctggt
    16981 gctaaacgaa aagatataga acaaagggta catcagttgg cagtacaatt acatttagag
    17041 ggattcttaa acaagtatcc ttctgaaatc tctgggggtc agaagcaacg cattgccatt
    17101 gcacgtgcat tagttactaa gccgacgatt ttactagccg atgaacctac aggtgcactt
    17161 gattcaaaaa catcaaaggc attgatgatg ttatttcaag agattcatca attggaacag
    17221 acaattttaa tggtaactca ttcaaatatc gatgcgtctt atgcagagcg agtcattttt
    17281 attaaagatg ggcgtctata tcatgaaata tatcgtggtg aagaaagtca attagctttt
    17341 caacaacgaa taacagatag cttagcactt gtgaatggag gaagtgtcaa tatatgaagt
    17401 taagattgtt atggcacata gtgcgacgtc aatttattac gcagcgactt gtaatcattc
    17461 cattcatttt agcggtaagt gtactattca tgattgaata tacgcttgtg tcaattgggt
    17521 taaatagcta cataaaacag aagaatgact tcctagtacc atttattatc atagctaatt
    17581 tttttatggc gcttttaact tttattttta ttttctatgc aaatcacttt atgatgtcac
    17641 aaagacgaaa agagtttagc atttttatga cattgggcat gaccaagaaa agtatgcgtt
    17701 taattgtagt gatggaaact atcttacaat ttgtgataat ttcagtcgtt agtattgccg
    17761 gcggatactt acttggtgcg atatttttct tgtttataca gaaaataatg ggcagtgaag
    17821 ttgcgacgtt aaggtattat ccatttgact ctgtagcgat gtttattact ttgattatca
    17881 ttgctgtatt aatgggcatg ctacttatat tcaacttgtt tagtattaat tttcaacggc
    17941 cgataactta tcaacatcgt tccgattcta gtgtcatatc acgatggttg cgttacgttt
    18001 taattgttat aggaagcgca gcactatatt taggttactt tattgcatta caacaagata
    18061 cgacgtttgg tgcctttttt aaaatatgga ttgtcatagg attagttatt atcggtactt
    18121 atgcattttt tgtaggtata agtgaaataa ttattagtat attgcagcag gtatcaaaag
    18181 tttactatca tccacggtat ttttttgtgg tagttgggat gcgtgtacgt cttaaaatga
    18241 atgcagtcag tcttgcaaca atcactttgc tgtgtacatt tttgattgta acgctcacaa
    18301 tgacattaac aacctatcgt gatatgaatc ataccattac gaaattgatt acgaatgatt
    18361 atgatttgtc atttagcgac aattctaagt cacaaataga acgtcaacaa acaattgaga
    18421 atattaaacg tgatatacag ggttcggtta atgcaaaaga cttcaaagta tatgaaacga
    18481 cattatttag agcttcttta gaaaagaatc gtgcttatta caagttaaaa caggctagtg
    18541 atgatattcc aatagacttc attggtaatg aaggcgcgat attttcaaga caatcagtaa
    18601 tgattacagc ttttactgca caagattata atcgatatca ccaaaacaaa ttacacttag
    18661 acaatcaaag tataggtatg attacgaatg tacctatttt taaaaagcag tctaaggtcg
    18721 gtcttaataa tgaagtcttt aaagtgaaac aacttgacgc acatgcgtta aatttgatga
    18781 tgattcaaga tagtatggtt ttaattgtta aagataacaa tcaattacaa aaagtaaaag
    18841 gattttatgc acatgaacaa aagaattcga caatatcgat aaactttaat gtatttggaa
    18901 agacgaaatt aacaacatca caaatacaaa agctatcgaa aaaatacgat gcgtcaataa
    18961 attctaaatc agaaatgcta atggtttggg atcgtttgac aggtggacta atatttgtag
    19021 gtggcgtagt atcaattgta cttgtcattg gaatatttct aatgatgtat tataaacaag
    19081 tctcagaagc ctatgcaaat cagcacaatt atgacattat gaaaaaactt ggtttagata
    19141 atggaagaat agcaaagata acacgaaatc aaatgacttt cttgttcgca ataccaataa
    19201 cagtagcact gattcacaca ttaatttcta gtaacattgt atatacgtta ctaaatatga
    19261 taggtattaa taaccatcat atatttttaa caagttacgt actagctgtc attataattt
    19321 cgtttctata tatggcgatg tacaaaataa cttcctatat ttatgctaaa gttattcatc
    19381 aacaacgcaa ttaaccatgt ttcagtgaaa tcacaatcaa tcatgtattt tcactgaaat
    19441 atattatatt aaaaagaaac ctaaaaacat tacaaataac aataacaaat ttcaaccgat
    19501 aagataaaat gtcttgtcgg tttttaatat aacaagtgat attttggaaa tgccaaaaat
    19561 atatagattg tttatataaa atgatttaaa atgttttata acaacatatt ttatgcaaca
    19621 cataaaatgg gtaactaaca tcacgaaatc attgtatttg ttgttacact gatgaagcga
    19681 tgtcacaaag aaatgtcgtt atcaaacgaa gcccgaaata catactgata ctcgaaataa
    19741 tgtaacgata aataacaatg ataacgattg attactacgc aaaaatatat gtaaattgac
    19801 gatttaaatg caattcgtat attttgccaa tgatttacac attaaaatgt ttgaaaattg
    19861 tcacaattca gtctaattta aaaggaagtt aattacaaaa ttaaaaaatc atgcatcgtg
    19921 tcatttagat attgaaaaag atgagtcaaa tttgtttcat atattttcca ataacaaatt
    19981 attatatcta aatatacaat cagaaatata tgaatagaaa tatcaataag aaaaataata
    20041 tgattaaaaa tgatgaatgg catacttata aagtgtctaa atattggcgg tcaatattac
    20101 ttacaaacac gaatgttaag taatgtagac aatgctgaaa aaataataag tagaaactct
    20161 atatagaatg ttcgttttta tttttaataa ttgaataatc attattgatg atttaatatg
    20221 tattcggtcg cacacgatac aaagtgactt gttttaatga tatgcaataa tatgacgttt
    20281 atcgtcgcgt gtaacaatgt atgagtgtgt cagtttaatt ttaaaagggt tataaggata
    20341 tttaataaga taaaggaggg cttaataaac aatcacatgt gaagttttta aggattatat
    20401 gagttgggca gctctttaat ccatagttat aacgaatttt aaattgttag atctaacgta
    20461 tggtatcagt atgtatgagt ttaacttaag tattaatcta tagtttaaag agcggtctaa
    20521 ttgtcttttt aaaaatagaa aataaggatg attataatga ggggttataa cggaagatat
    20581 tgtagctgga ctaatacagc tatacaatgt gattatttta ataaagtaag acaggtgaaa
    20641 aaagacggta aatcggatag gttgagcaac aacataaact cgaacattat ttatcgtgtg
    20701 ctcgaaaaat gtatcacgct atataatgtg tgttcacggt gtaaacgcgc acttatttta
    20761 tcagaacatt ctaaaaagaa catattcaat ataaaaaagg ctgtgtaggg gtgtcttatg
    20821 aataatagaa atgtgtatga tatcgaagta agtgattata aaggcttaac ttataaatta
    20881 gaagcattta gaggtaaagt gattttagtt gttaatactg caacagaatg tatatatagc
    20941 gaacaattga aaaaactaga gactttattt caaaaatata aggatcgtgg gtttgtagtg
    21001 ttgagttttc cgaataataa ttttgacaat cgacaaccag gttctaatga agaaatcttg
    21061 aaaattagtc gtgagaaatt tggtgtaaca tttccagtgt tagctaaaat atctgtgaac
    21121 gggaacgatg aacatccgtt atttacgcat ttaaagaatg aacaaccagg aatctttggg
    21181 tccccaataa aatggaattt cacaaaattt ataatcgatc gacaaggaaa tgttgtaaat
    21241 cgattcttgc caatggaaga tccattggat atatcgacaa atatagaaat attattgcaa
    21301 gaatcttcat cttaaattta aatttgagcg cttagtatgc aaataacaca agagcctctt
    21361 aatgatgtac taatagtatg ttattaggag gcattttata tttagaaaat cagtaatttg
    21421 acctatttta ctgaaaggct gatttggtac ataataaata gtaaataaat aaaaaataac
    21481 aacgatgcat tactgtatgc attaataact gacacgacat aatcaaagtt ttgtctgaat
    21541 tactgataat gtcattcaag caacatgaag gttgtaaata tttgcaagta taactatcag
    21601 acacaactca agtttgtttt aatttatacc atacatatta aaaaattgac taaactatcg
    21661 ataaaaaaag agtcaatcat ctatttcaag tttattgagg tgaaaacatt tgaaattaaa
    21721 tacatctaat agtccattta cagaaaaaca agtcacagag attaacaatc tgctgcaaac
    21781 attaacagag agccaacaac agtggcttag tggtttttta ctagctaata gtaacgatac
    21841 gacaagtgat agtaatcaac aacaattaga gacagaagtg tggcaacaat cacaaatatc
    21901 agaagaacaa gcaacttcaa caacgtatat gttacaaaat aaagagccac atatcgaagc
    21961 taatcagcgg catgttacag tgctatatgg ttctgaatca ggtaatgcca tgcgtttagc
    22021 tgaaattttt tcagaacgtt taagtgatat cggacatcaa gttgttttga tgtcaatgga
    22081 tgaatatgat acgacaaaca tcgcgcagtt agaagattta tttattatta cgtctactca
    22141 tggtgaagga gaaccgcctg ataatgcatg ggatttcttt gaatttttag aagacgataa
    22201 cgcacctaat ttaaatcatg tgagatattc agtactagct ttaggtgatc aaacatatga
    22261 atttttctgt caagccggta aagatgtaga tgttttacta gaaaatctag gcgctgagcg
    22321 tatatgtaag cgtgtagatt gtgatattga ttatgaagaa gacgcagaaa agtggatggc
    22381 agacatcatt aatattattg ataccacatc agaaggtatt caaagtgaat cggtgataag
    22441 tgaatcaatt aagtctgcca aagaaaagaa atattctaaa tcaaatccat accaagcaga
    22501 agtattagcg aatatcaatt taaatggtac cgattcaaat aaagaaacac gacatataga
    22561 atttttactt gatgatttta gtgaatcata tgaaccagga gattgtatag tagcattacc
    22621 gcaaaacgac cctgaattgg ttgaaaaact aatattcatg ttaggttggg atccgcaatc
    22681 tccggtgcca attaatgatc atggtgatac agttcctatt gttgaagcac taacatcaca
    22741 ttttgaattt actaaattaa cattgccatt attgaaaaat gcagatatct attttgacaa
    22801 tgaagaatta tctgaacgta ttcaagatga gtcatgggcg cgtgaatatg ttataaatcg
    22861 ggactttata gatttaataa cagattttcc aactatagaa ttacaacctg agaatatgta
    22921 tcaaatcctt agaaaattac caccaagaga gtattcgatt tctagtagtt ttatggcaac
    22981 gccagatgaa gtgcatatta ccgttggtac ggttcgttat caagcacatg gacgtgagag
    23041 aaaaggtgta tgctcggttc attttgctga gcgaattaaa ccaggcgata tagtaccaat
    23101 ttatttgaag aaaaatccga acttcaaatt tccgatgaag caagatatac cggttattat
    23161 gattggacca ggtactggaa ttgctccttt tagagcatat ttacaagaac gtgaagaact
    23221 tggtatgact ggaaaaacat ggttgttctt tggtgatcaa caccgtagtt ctgacttttt
    23281 atatgaagaa gaaatagaag aatggcttga aaatggaaac ttaacacgcg tagatttagc
    23341 attttcaaga gaccaagaac acaaagaata tgtacagcat cgtataatgg aagaaagtaa
    23401 acgtttcaat gaatggattg agcaaggcgc agcaatctat atttgtggcg atgaaaaatg
    23461 tatggcgaaa gatgtccatc aagccattaa agatgtattg gtaaaagaac gtcatatttc
    23521 tcaagaagaa gcagagttat tattgcgaca aatgaaacaa caacaacgct atcaacgtga
    23581 tgtttattag cgattggtgt taaatatttt aaggtgtaat gatgtaaaaa gatataaagg
    23641 atgttgctca acatgaatat gccattaatg atagatttaa caaataaaaa tgtcgtcata
    23701 gttggtggag gcgtcgttgc aagtcgtcgg gcacaaacat taaatcaata cgttgaacat
    23761 atgacggtca tcagtccgac aatcactgaa aaacttcaaa atatggtaga taacggtgtc
    23821 gtcatatgga aagaaaaaga atttgaacca agcgatattg tagacgcgta tctagttatt
    23881 gcagcaacca atgagccacg tgtcaatgaa gcggtaaaaa aagccttacc tgagcatgcc
    23941 ctttttaata atgttggaga tgcatcaaat ggcaatgttg tatttccaag tgcactacac
    24001 cgcgacaagc taactatcag tgtatcaact gatggtgcga gtcctaagtt gacaaaatca
    24061 attatggcag agcttgaggc gttatatcca ccatcataca gttcgtatat cgacttttta
    24121 tatacttgcc gacagaaaat aaaagtactt gatataacat ataacgaaaa gcaacagtta
    24181 ctgtcacaaa ttgtgtcaca agaatattta aatcatgaca aacaagctca atttttagcg
    24241 tggttggatg taagataata atagcggacc gtctaaccgt ctaaggtaag tcttcttatt
    24301 ttaactttaa cgcttaatca ttgaaattaa gacatgggcg gctttgtgaa tagtctaata
    24361 atgaaggatt taagcgataa tgatatgcgt tttaaatatg aatattacaa tagagaaaaa
    24421 gatacgtaga acaaacttaa taaaataggt ggataaattg aaatctggtt gaagtcgtta
    24481 ctatcatagc gacctttagc cagatttttt gtgcaataga aagcaataat aaaaatgata
    24541 gatcaaaatg aaatacagga caggatatac aaggattagt catgccatgt tatcaagtag
    24601 gaaaatcaaa cttcactatt gatagttacg caaaaaagat ttttttgata aaatgagata
    24661 acttaaatat aaaaaattat attaattata atatttaagt taaagagggg gattatgtaa
    24721 attgtattaa aagtggaggg agaaaataat atgaatagtg ataatatgtg gttaacagta
    24781 atggggctca ttattattat ttcaattgta ggtttactca ttgccaaaaa gataaatcca
    24841 gttgtaggta tgacaatcat accttgctta ggggcaatga ttttaggata tagtgtgaca
    24901 gatttggttg gattttttgc taaagggtta gatcaagtca tcaacgttgt tattatgttt
    24961 atctttgcca ttattttctt tggcatcatg aacgatagtg gtttattcaa gccgcttgtc
    25021 aaacgcttaa tattaatgac acgaggcaat gtcgtcattg tctgtgcaat gacagcttta
    25081 attggcacaa tagcccaatt agatggggcc ggtgcggtaa catttttgct ttctattcct
    25141 gcattattac ctttatataa agcgttaaat atgaataaat atttattgat tttactatta
    25201 gcattaagcg cggcgattat gaacatggta ccttggggag gtccaatggc tcgtgtagct
    25261 gcagtgttaa aagccaaaag tgtcaatgaa ttatggtatg gattaatacc tattcaaata
    25321 ataggtttca ttcttgttat gttgtttgcg gtatatcttg gatttaaaga acagaaacgt
    25381 atcaaaaaag caatagagag aaatgaatta ccgcaaacac aagatataga tgtacataaa
    25441 ttagttgaag tatatgaacg agatcaagat gtaaggtttc ctgtaaaagg acgtgcaaga
    25501 acaaaatcat ggataaaatg ggtgaataca gctttaactt tagctgttat tctatcgatg
    25561 ttaataaata ttgcgccacc tgaatttgca ttcatgatag gtgtttcgtt ggcacttgtt
    25621 attaatttta aatcagtgga tgaacaaatg gaacgattaa gagcgcatgc gccgaatgca
    25681 ttaatgatgg ctgcagtgat tattgcagca ggtatgtttt taggtgtact aaatgaaacc
    25741 ggtatgctta aagcgattgc gaccaattta atcaaagtga ttcctgcaga agtaggacca
    25801 tacttgcata ttattgtagg tttacttggc gtaccattag atttactaac tagcacagac
    25861 gcttattatt ttgctgtgtt accgattgtc gaacaaacag cagggcaatt tggtgtaccg
    25921 tctgtatcaa cagcttattc aatggtcata gggaatatta taggtacatt tgtcagccca
    25981 ttttcaccag ccttatggtt ggcaattggt ttagcagagg caaacatggg cacgtatatt
    26041 aagtatgcat tcttttggat ttggggattc gctatcgtta tgttagtaat tgcaatgttg
    26101 atgggcattg tgacgattta agtatgaaaa aatagaaact atggtcacgt tgcaaaatga
    26161 aataatagtt gcataaacat gtcgaaatga cggacgaatc tttaaacaat tttaaaaatt
    26221 aatgaaataa ttgtgtagaa atatgaattt cactaaatgt taataacttt gtgacgtttt
    26281 agttaacaga ctaataaaaa tttgaaaata ctatatatag tggtataacg taatgagtag
    26341 acacaatata taggaagaag gggtaaaatg aatcaaatcg aagaagcatt aacgggtttg
    26401 atttctaaag atcctgctat tgttaacgaa aatgctaaca aagatagtga tacattttca
    26461 acaatgagag atttaacagc aggtatcgtt tctaaatctt acgcattaaa tcatttatta
    26521 ccaaagcacg ttgcagatgc acatcaaaga ggggacatac attttcacga cttagattat
    26581 catccattcc aaccgttaac taactgttgt ttaatagatg ctaaaaatat gctacataat
    26641 ggatttgaaa taggcaacgc gaatgtaact tcaccaaaat caatacaaac tgcatcagcg
    26701 cagcttgtac aaattatagc caatgtttct agcagtcaat atggtggctg tacggttgac
    26761 cgcgttgacg aattacttag tacatatgca cgacataatg aagaacaaca taggaatatc
    26821 gcaaagcaat ttgtcaaaga atctgaaatt gatcgttatg ttgatcaaca agtcactaaa
    26881 gacatcaatg atgcgattga aagtttagaa tatgaaatta ataccttata tacatctaat
    26941 ggacagacac cttttgtaac attaggattc ggcttaggta cagatcattt aagtcgcaaa
    27001 attcaacaag ctatcttaaa tactcgtatc aaaggcttag gaaaagaccg cacgacagcg
    27061 attttcccga aacttgtatt ttcaattaaa aaaggaacca actttagtcc gcaagatccg
    27121 aactatgaca ttaaacaact agcattaaag tgttcaacga aacgtatgta tccagatatt
    27181 ttaaattatg acaaactcgt agaaatatta ggtgatttca aagcgccaat gggttgtcgt
    27241 tcatttttac caagttggaa agatgcggaa ggtcattttg aaaataatgg tcgttgtaat
    27301 cttggtgttg ttacacttaa tttacctaga atggcattag aatctgccgg taatatgacg
    27361 aaattctggg aaatctttta tgaacgtatc gatgtgttac atgatgcatt actttatcgt
    27421 ataaatcgtt tgaaagatgc tgtaccgaat aacgcaccga ttttatataa aagtggcgca
    27481 tttaactata aattaaaaga aacagatgat gttgctgagt tatttaaaaa taaacgtgca
    27541 acgatttcaa tgggctatat agggttgtat gaaacagcta ctgttttcta tggtccagac
    27601 tgggaaacat ctcaagaagc aaaagcattt acgcttgaaa ttcttaaaga aatgaaacgt
    27661 tatcaaacga aatggacaga attatatgac atttggttca gtatttacag tacgccgagt
    27721 gaatcgctaa cggatcgttt ttgtcgttta gaccaagaga gatttggaga tattaaagac
    27781 attacagata aaggatatta tcaaaactct ttccattatg atgtacgtaa agatgttaca
    27841 ccttttgaaa agttagattt tgaaaaagat tatccttatt atgcgagtgg tggtttcatt
    27901 cactattgtg agtatccgaa attgcaacac aatttgaaag cactagaagc ggtatgggac
    27961 tactcttatg acaaagttgg ttacttaggt acaaatattc cgattgatca ttgttatgaa
    28021 tgtgattacg atggagattt tgaagcaact gaaaaaggat ttaaatgccc gaactgtggc
    28081 aatgataatc ctaaaacagt tgatgtcgtt aaacgaacat gtggttacct aggcaatcca
    28141 gttcaacgtc cagtaattaa aggccgtcat aaagaaattt gcgcacgagt aaaacatatg
    28201 aaagcgccta aagaatgata cttttagaca ttaaacaagg acaaggttat attgctaaaa
    28261 tagaatcaaa tagctttgtt gacggtgaag gagtaagatg cagtgtttat gtatcaggat
    28321 gtccatttaa ttgtgttgga tgttataaca aagcctcaca aaagttcaga tatggcgaga
    28381 aatacactga tgaaatatta gcagaaatat tagatgattg cgatcatgat tatatatctg
    28441 ggctaagtct attaggtggc gaaccatttt gtaatttgga tattacatta aatcttgtca
    28501 aagcatttcg agcacgtttt ggaaatacaa agacaatttg ggtatggact ggatttttat
    28561 atgaatattt agcaaatgat tgtacagaac gtcgagagtt attatcatac attgacgttt
    28621 tagtagatgg tctatttata caacacttat tcaaacctga tttaccatat aaaggttctt
    28681 taaatcaacg cattatagat gtacaacaat cactctcgca tgcgcgtatg attgaatata
    28741 tagttagttg aatatgtatt agaagtcaag gtaacattcg ttgccttggc ttctttttag
    28801 gttaggtaca taattgaaag ttaataaaag caattcttta taaaaatata ttgatagaat
    28861 atgacctaac aatcattttg ataccaatac taaaagttgc atatccgttt tttaaaaaag
    28921 ttgaaagaga aaagtggtat tttagtggga aggaagtcta actttttggt agcgttttac
    28981 aataaataaa tattcgttaa taacgtataa atattcttaa atgccattct agtaaaat
//
LOCUS       DAMQWL010000023        28986 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.023, whole genome shotgun sequence.
ACCESSION   DAMQWL010000023 DAMQWL010000000
VERSION     DAMQWL010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 28986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28986
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.023"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(204..1472)
                     /gene="ilvA"
                     /locus_tag="PF788_000909"
     CDS             complement(204..1472)
                     /gene="ilvA"
                     /locus_tag="PF788_000909"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase IlvA"
                     /protein_id="HDG6303183.1"
                     /translation="MTVKTTVSTKDIDEAFLRLKDIVKETPLQLDHYLSQKYDCKVYL
                     KREDLQWVRSFKLRGAYNAISVLSDEAKSKGITCASAGNHAQGVAYTAKKLNLNAVIF
                     MPVTTPLQKVNQVKFFGNSNVEVVLTGDTFDHCLAEALTYTSEHQMNFIDPFNNVHTI
                     SGQGTLAKEMLEQAKSDNVNFDYLFAAIGGGGLISGISTYFKTYSPTTKIIGVEPSGA
                     SSMYESVVVNNQVVTLPNIDKFVDGASVARVGDITFEIAKENVDDYVQVDEGAVCSTI
                     LDMYSKQAIVAEPAGALSVSALENYKDHIKGKTVVCVISGGNNDINRMKEIEERSLLY
                     EEMKHYFILNFPQRPGALREFVNDVLGPQDDITKFEYLKKSSQNTGTVIIGIQLKDHD
                     DLIQLKQRVNHFDPSNIYINENKMLYSLLI"
     gene            complement(1487..2059)
                     /gene="leuD"
                     /locus_tag="PF788_000910"
     CDS             complement(1487..2059)
                     /gene="leuD"
                     /locus_tag="PF788_000910"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDG6303184.1"
                     /translation="MAAIKPITTYKGKIVPLFNDNIDTDQIIPKVHLKRISKSGFGPF
                     AFDEWRYLPDGSDNPDFNPNKPQYKGASILITGDNFGCGSSREHAAWALKDYGFHIII
                     AGSFSDIFYMNCTKNAMLPIVLEKSAREHLAQYVEIEVDLPNQTVSSPDKRFHFEIDE
                     TWKNKLVNGLDDIAITLQYESLIEKYEKSL"
     gene            complement(2060..3430)
                     /gene="leuC"
                     /locus_tag="PF788_000911"
     CDS             complement(2060..3430)
                     /gene="leuC"
                     /locus_tag="PF788_000911"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDG6303185.1"
                     /translation="MGQTLFDKVWNRHVLYGKLGEPQLLYIDLHLIHEVTSPQAFEGL
                     RLQNRKLRRPDLTFATLDHNVPTIDIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSD
                     EQGIVHMVGPETGLTQPGKTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQT
                     KPKNLKIDINGTLPTGVYAKDIILHLIKTYGVDFGTGYALEFTGETIKNLSMDGRMTI
                     CNMAIEGGAKYGIIQPDDITFEYVKGRPFADNFAKSVDKWRELYSDDDAIFDRVIELD
                     VSTLEPQVTWGTNPEMGVNFSEPFPEINDINDQRAYDYMGLEPGQKAEDIDLGYVFLG
                     SCTNARLSDLIEASHIVKGNKVHPNITAIVVPGSRTVKKEAEKLGLDTIFKNAGFEWR
                     EPGCSMCLGMNPDQVPEGVHCASTSNRNFEGRQGKGARTHLVSPAMAAAAAIHGKFVD
                     VRKVVV"
     gene            complement(3444..4490)
                     /gene="leuB"
                     /locus_tag="PF788_000912"
     CDS             complement(3444..4490)
                     /gene="leuB"
                     /locus_tag="PF788_000912"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDG6303186.1"
                     /translation="MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFG
                     GASIDTFGEPLTEKTLNACKRADAILLGAIGGPKWTDPNNRPEQGLLKLRKSLNLFVN
                     IRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTRE
                     EIERIVHVAFKLAASRRGKLTSVDKENVLASSKLWRKVVNEVSQLYPEVTVNHLLVDA
                     CSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGS
                     APDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYSMIEHGQTTADLGGKLN
                     TTDIFEILSQKLNH"
     gene            complement(4493..6022)
                     /locus_tag="PF788_000913"
     CDS             complement(4493..6022)
                     /locus_tag="PF788_000913"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDG6303187.1"
                     /translation="MSSHIQIFDTTLRDGEQTPGVNFTFDERLRIALQLEKWGVDVIE
                     AGFPASSTGSFKSVQAIAQTLTTTAVCGLARCKKSDIDAVYEATKDAAKPVVHVFIAT
                     SPIHLEHKLKMSQEDVLASIKEHVTYAKQLFDVVQFSPEDATRTELPFLVKCVQTAVD
                     AGATVINIPDTVGYSYHDEYAHIFKTLTESVTSSNEIIYSAHCHDDLGMAVSNSLAAI
                     EGGARRIEGTVNGIGERAGNAALEEVALALYVRNDHYGAQTALNLEETKKTSDLISRY
                     AGIRVPRNKAIVGQNAFSHESGIHQDGVLKHRETYEIMTPQLVGVSTTELPLGKLSGK
                     HAFSEKLKALGYDIDKEAQIDLFKQFKAIADKKKSVSDRDIHAIIQGSEHEHQALYKL
                     ETLQLQYVSSGLQSAVVVVKDKEGHIYQDSSIGTGSIVAIYNAVDRIFQKETELIDYR
                     INSVTEGTDAQAEVHVNLLIEGKTVNGFGIDHDILQASCKAYVEAHAKFAAENVEKVG
                     N"
     gene            complement(6052..7056)
                     /gene="ilvC"
                     /locus_tag="PF788_000914"
     CDS             complement(6052..7056)
                     /gene="ilvC"
                     /locus_tag="PF788_000914"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDG6303188.1"
                     /translation="MTTVYYDQDVKTDALQGKKIAVVGYGSQGHAHAQNLKDNGYDVV
                     IGIRPGRSFDKAKEDGFDVFPVAEAVKQADVIMVLLPDEIQGDVYKNEIEPNLEKHNA
                     LAFAHGFNIHFGVIQPPADVDVFLVAPKGPGHLVRRTFVEGSAVPSLFGIQQGASGQA
                     RNIALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGY
                     QPELAYFEVLHEMKLIVDLMYEGGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKA
                     VLTDIQNGNFSNRFIEDNKNGFKEFYKLREEQHGHQIEKVGRELREMMPFIKSKSIEK
                     "
     gene            complement(7193..7447)
                     /locus_tag="PF788_000915"
     CDS             complement(7193..7447)
                     /locus_tag="PF788_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HDG6303189.1"
                     /translation="MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGIS
                     NMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLVDNEA"
     gene            complement(7447..9216)
                     /gene="ilvB"
                     /locus_tag="PF788_000916"
     CDS             complement(7447..9216)
                     /gene="ilvB"
                     /locus_tag="PF788_000916"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HDG6303190.1"
                     /translation="MSKTQHEVNQNIDPLKMAESLEPEQLNEKTLNDMRSGSEVLVEA
                     LLKENVDYLFGYPGGAVLPLYDTFYDGKIKHILARHEQGAVHAAEGYARVSGKTGVVV
                     VTSGPGATNVMTGITDAHCDSLPLVVFTGQVATPGIGKDAFQEADILSMTSPITKQNY
                     QVKRVEDIPKIVHEAFHVANSGRKGPVVIDFPKDMGVLATNVDLCDEINIPGYEVVTE
                     PENKDIDTFISLLKEAKKPVVLAGAGINQSKSNQLLTQFVNKHQIPTVTTLLGLGAVP
                     YEDTLFLGMGGMHGSYASNMALTECDLLINLGSRFDDRLASKPDAFAPNAKIVHVDID
                     PSEINKVIHVDLGIIADCKRFLECLNDKNVETIEHSDWVKHCQNNKQKHPFKLGEEDQ
                     VFCKPQQTIEYIGKITNGEAIVTTDVGQHQMWAAQFYPFKNHGQWVTSGGLGTMGFGI
                     PSSIGAKLANPDKTVVCFVGDGGFQMTNQEMALLPEYGLDVKIVLINNGTLGMVKQWQ
                     DKFFNQRFSHSVFNGQPDFMKMAEAYGVKGFLIDKPEQLEEQLDAAFAYQGPALIEVR
                     ISPTEAVTPMVPSGKSNHEMEGL"
     gene            complement(9244..10932)
                     /gene="ilvD"
                     /locus_tag="PF788_000917"
     CDS             complement(9244..10932)
                     /gene="ilvD"
                     /locus_tag="PF788_000917"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDG6303191.1"
                     /translation="MRSDMIKKGDHQAPARSLLHATGALKSPTDMNKPFVAICNSYID
                     IVPGHVHLRELADIAKEAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADA
                     AETVINAHWFDGVFYIPNCDKITPGMILAAMRTNVPAIFCSGGPMKAGLSAHGKALTL
                     SSMFEAVGAFKEGSISKEEFLDMEQNACPTCGSCAGMFTANSMNCLMEVLGLTLPYNG
                     TALAVSDQRREMIRQAAFKLVENIKNDLKPRDIVTREAIDDAFALDMAMGGSTNTVLH
                     TLAIANEAGIDYDLERINAIAKRTPYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKD
                     GTLHPDRITVTGKTLRENNEGKEIKNFDVIHPLDAPYDAQGGLSILFGNIAPKGAVIK
                     VGGVDPSIKTFTGKAICFNSHDEAVEAIDNRTVRAGHVVVIRYEGPKGGPGMPEMLAP
                     TSSIVGRGLGKDVALITDGRFSGATRGIAVGHISPEAASGGPIALIEDGDEITIDLTN
                     RTLNVNQPEDVLARRRESLTPFKAKVKTGYLARYTALVTSANTGGVMQVPENLI"
     gene            complement(11250..11405)
                     /locus_tag="PF788_000918"
     CDS             complement(11250..11405)
                     /locus_tag="PF788_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303192.1"
                     /translation="MIIHCSIVSNFIFNLYIVTNFNLNFLSLKQIIYSKLIVRKFKIF
                     VDILKQI"
     gene            11443..11904
                     /gene="tsaE"
                     /locus_tag="PF788_000919"
     CDS             11443..11904
                     /gene="tsaE"
                     /locus_tag="PF788_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000590797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDG6303193.1"
                     /translation="MIKINNLDEMNQFAIFLVEQLKSGDLILLNGDLGAGKTTLTQFI
                     GKALGVRRTINSPTFNIIKSYRGKNLKLHHMDCYRLEDSDEDLGFDEFFEDQAITVIE
                     WSQFIKDLLPATHLSINISTISENTRQIELFAQGEHYEQIKEAIIHEFAAH"
     gene            11885..12547
                     /gene="tsaB"
                     /locus_tag="PF788_000920"
     CDS             11885..12547
                     /gene="tsaB"
                     /locus_tag="PF788_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDG6303194.1"
                     /translation="MNSLLIDTSNQPLSVALMQNDEVLAEITTDSKQNHSVQLMPAIS
                     QLFEQSKIAKQQLDAIIVAEGPGSYTGLRIGVTVAKTLAYALDVKLYGVSSLKALAAT
                     IDHTDKLLVPVFDARRQAVYTGIFQWQNGQLVTILEDQYMSIEALRAFLEDLNQPFIY
                     IGKDTVKLQDELQGEVIAQLPNASVMYQLLDKPSDVHTFTPKYHKLAEAERNWINSQK
                     NN"
     gene            12520..12984
                     /gene="rimI"
                     /locus_tag="PF788_000921"
     CDS             12520..12984
                     /gene="rimI"
                     /locus_tag="PF788_000921"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001611465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDG6303195.1"
                     /translation="MDQQSKEQLNIREMTKEDVPQVFDLERRSFNDSSWTIDAFYHEI
                     EQNNFAKYFVLEFEQQIIGYLGLWIVIDQAQITTVAIDDNYRGYGLGQMLLKYGINYA
                     SHTCDVMSLEVRVNNKVAQHVYENLGFQYGGKRKNYYGEGEDAMVMWVNLND"
     gene            12977..14002
                     /gene="tsaD"
                     /locus_tag="PF788_000922"
     CDS             12977..14002
                     /gene="tsaD"
                     /locus_tag="PF788_000922"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDG6303196.1"
                     /translation="MTKDILILAVETSCDETSVSVIKNGRDILSNTVLSQIESHKRFG
                     GVVPEVASRHHVEGITATINEALGDADVSIEDIDAIAVTEGPGLIGALLIGVNAAKAL
                     AFAYDKPLIPVHHIAGHIYANHIEEPLTFPLIALIVSGGHTELVYMKDHLSFEVIGET
                     RDDAVGEAYDKVARTIGLNYPGGPQVDRLAAEGEDTYSFPRVWLDKDSYDFSFSGLKS
                     AVINQLHNQRQKNIPIIEANVATSFQNSVVEVLTFKAIQACKEYGVQRLIVAGGVASN
                     KGLRQSLADQCKVNDIQLTIPSPKLCTDNAAMIGVAGHYLYQQGRFADLALNGHSNID
                     LEEYSAE"
     gene            complement(14104..15714)
                     /locus_tag="PF788_000923"
     CDS             complement(14104..15714)
                     /locus_tag="PF788_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MutS family DNA mismatch repair protein"
                     /protein_id="HDG6303197.1"
                     /translation="MSTNQTFLIFVIAIILLTSVIGIVGRYMSRQRLLKSMETLWQTI
                     SPLEAFIRPNSHFDYEYKLYKEKFESHSLVDDKTWSDLNMNAIFHKMNYNLTAIGEMK
                     LYACLRGMLSITNKSLLSLFNDNAEFRKNVTYHLALIGKTVYPTFPDQITPVKRQNIL
                     FLCPFLPVISFAVIFINSQVGILLFLMSCLFNIILSATLKRTYEDDLKSIFYASNVLK
                     QGYTISKIKHAPQPEVNFKQFRTARHLTSVLAEVNDEDIGAMVIKLVKLIFMLDYVLF
                     HSIQKSYTTHMNELKNCFDYIAELDNHYALAMYRRTLECYTEPQIDDSNDGIVFSELT
                     HPLIADAVANDFSLSQNILLTGSNASGKSTFMKSIAINIILASAIQTVTASKFVYQPG
                     IVFTSMANADDVLSGDSYFMAELKSIKRIVEIPDNQKIYCFIDEIFKGTNTTERIAAS
                     ESVLSFLHEKSNFRVIAATHDIELAELLKQRYENYHFNEVIENNNIHFDYKIKPGKAN
                     TRNAIELLKITSFPAKIYERAKDNVPKI"
     gene            15803..15931
                     /locus_tag="PF788_000924"
     CDS             15803..15931
                     /locus_tag="PF788_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303198.1"
                     /translation="MIKTMSIENMRTYQQRVNNLWIKGVDNVIYCGYQVGKQKIND"
     gene            complement(16075..18003)
                     /gene="abc-f"
                     /locus_tag="PF788_000925"
     CDS             complement(16075..18003)
                     /gene="abc-f"
                     /locus_tag="PF788_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein"
                     /protein_id="HDG6303199.1"
                     /translation="MILLQLNHISKSFDGEDIFTDVDFEVKTGERIGIVGRNGAGKST
                     LMKIIAGVENYDSGNVSKIKNLKLGYLTQQMTLNSNATVFEEMSKPFEHIKRMESLIK
                     EETDCLSKHANDYDSDTYKTHMSRYESLSNQFEQLEGYQYESKIKTVLYGLNFSEEDF
                     NKPINDFSGGQKTRLSLAQMLLNEPDLLLLDEPTNHLDLETTKWLEDYLRYFKGAIVI
                     ISHDRYFLDKIVTQIYDVALGDVKRYVGNYEEFIQQRDLYYQKRMQEYESQQAEIKRL
                     ETFVEKNITRASTSGMAKSRRKILEKMERIDKPMLDAKSANIQFGFDRNTGNDVMHVK
                     NLEIGYQTAITKPMSIEVSKGDHIAIIGPNGIGKSTLIKTIANQQKALNGDITFGANL
                     QIGYYDQKQAEFKSSKTILDYVWDQYPLMNEKDIRAVLGRFLFVQDDVKKIINDLSGG
                     EKARLLLALLMLQRDNVLILDEPTNHLDIDSKEMLEQALQHFEGTILFVSHDRYFINQ
                     LANKVFDLTIDGGKMYLGDYQYYIEKVEEAEALKAHQEEQSVNVQAHKKSMEQSSYHN
                     QKEQRREQRKLERQISECENEIETLETTILQIDEQLTQPEVYNNPQKANELAIQKQDS
                     EQKLEHAMSKWEELQQKL"
     gene            18256..18891
                     /locus_tag="PF788_000926"
     CDS             18256..18891
                     /locus_tag="PF788_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HDG6303200.1"
                     /translation="MSDQVKIPRATLKRLPLYYRFVSSLKSKGIDRVNSKAISDALQI
                     DSATIRRDFSYFGELGKKGYGYNIDSLLDFFKSELSESDMIKIAIVGVGNLGKALLTY
                     NFSIHDDMTITEAFDVKEDVIGQKIGNVIVKDNDELITTLKKEEIDVVILTTPERVAQ
                     KVADELVQAGVKGILNFTPGRINTPSDVQVHQIDLGIELQSLLFFMKNYSE"
     gene            19195..20274
                     /locus_tag="PF788_000927"
     CDS             19195..20274
                     /locus_tag="PF788_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000266877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDG6303201.1"
                     /translation="MWMIFSGLIVGGLLGFVMQRTRFCLTGGFRDMYVQKNNKMFYAL
                     LIAITIQSIGLLILTATDILQIPAHSFPILGTIIGSFIFGIGIVLAGGCATGTWYRAG
                     EGLIGSWIALVLYAVTAAITKTGILKPVMDKINQPTNVNSDMSQTTGIPFWGLVVILT
                     IITIFLVVRTLNNKKVRVAVPKLKQRYTGIRYYLFEKRYHPFIAAIVIGLIALLAWPM
                     SASTGRNDGLGITTPSANLVHFLITGETKFIDWGVFLVLGIFIGSYIAARGSREFKWR
                     LPDKITIRNSAIGGICMGFGASVAGGCSIGNGLVETATMTWQGWIALASMIVGVWTMS
                     HFIFVRPMKKVHQQSAKVKQQTQIV"
     gene            20334..20558
                     /locus_tag="PF788_000928"
     CDS             20334..20558
                     /locus_tag="PF788_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDG6303202.1"
                     /translation="MIHELGTVGMVCPFPLIEAQKKMATLQSGDELKIDFDCTQATEA
                     IPNWAAENGYPVTNYEQIDNASWTITIQKV"
     gene            20766..22016
                     /locus_tag="PF788_000929"
     CDS             20766..22016
                     /locus_tag="PF788_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HDG6303203.1"
                     /translation="MNLNDTIFMFLCTLLVWLMTPGLSLFYGGLVQSKNALNTVMQSM
                     AAIVLVTFVWITVGFTISFGNGNLWFGNWEYTFLNHVGFATQEDISPHIPFALFMLFQ
                     MMFCTIAISILSGSIAEKMKFIPYLLFVVIWTALVYSPVAHWVWGGGWINKLGVLDFA
                     GGTVVHITSGVSGLVLAIMIGKGNKHSESTPHNLIITLIGGIFVWIGWYGFNVGSAFT
                     FDNIAMLAFTNTVISASAGAIGWLILEYIFKKTTSLLGLLLGALAGLVVITPAAGYVT
                     YLSATIMALIGGICCYIVINYIKVKLKYHDALDAFGIHGVGGIIGAVLTAVFQSKKAN
                     PDIENGFIYTGDIHIILVQILCVTAVVIFSIVMTFIIAKVIKLITPLSVTEQETNIGL
                     DKIVHGEHAYFEGELNRFNKHIRY"
     gene            22199..23149
                     /locus_tag="PF788_000930"
     CDS             22199..23149
                     /locus_tag="PF788_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDG6303204.1"
                     /translation="MKNISDIAKLAGVSKSTVSRFLNNGSVSKKTSEKLTRIIAEHDY
                     QPNQFAQSLRARQTHLIGAIIPRMNSYAVDETIKGLAKQCQKYESQLILNYTGLNIEA
                     EIQALETLARSKVDGIVLMATDITERHIEVINKMNVPIVIVGQQHEQLHSIVHDDYKA
                     GQIIGEWIGQQGYQQVEVFSVSEKDIAVGIHRKRGLLDQLAKYQIKPNIHETNFTYVE
                     AQKDVANVLENVEQVDAVVGATDTIALAAYKYYSDKKDVMKPHQIYGFGGDPMTQLVS
                     PSIKTIHYNYFEAGQCAMEEIQQMLKKQDMPYSVTVDVNI"
     gene            23298..24782
                     /locus_tag="PF788_000931"
     CDS             23298..24782
                     /locus_tag="PF788_000931"
                     /EC_number="3.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose-6-phosphate hydrolase"
                     /protein_id="HDG6303205.1"
                     /translation="MTEWTREERYQRIEDVDTEYFKTLKQQVDQSKFRQQFHIQPETG
                     LLNDPNGLIFYKGKYYVSHQWFPLGAVHGLKYWYNYTSDDLINFKTEGPILNPDTKYD
                     SHGVYSGSAFEYNGHLYYMYTGNHRDNHWQRHASQMIARLKEDGSVEKFPKPVISQQP
                     EGYTSHFRDPKVFKYDEKYYAIIGAQNNDQQGRLLLYNTEDIINWHYLGEINTELDDF
                     GYMWECPDYFNVDNQDVILICPQGIEPKGDQFKNIYQSGYILGKFDIEKLTYEHENFV
                     ELDNGFDFYAPQTFLDEKGRRVLIGWMGLPEIEYPTDNEGWAHCLTIPRVLNVENGQL
                     KQRPYPALEKLRHNKETALGYANKFTRKLHPYEGKQYELIIDILDNDATEVYFELRTS
                     KTSSTLIAYNKRENKITLDRSDSGLLPTNVEGTTRSTILDTPLKQLQIFVDTSSIEIF
                     CNDGERVLTSRIFPTEDALGIKTSTESGQVYLQFTKYDLKDEHK"
     gene            24779..25738
                     /locus_tag="PF788_000932"
     CDS             24779..25738
                     /locus_tag="PF788_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDG6303206.1"
                     /translation="MRRLFSIGEALIDFIPNVTNANLKDVQTFTKQIGGAPCNVACTV
                     QKLGQQAYMITQLGNDAFGDSIIETISSIGVDVSKVYRTNEANTALAFVSLTEAGERD
                     FSFYRKPSADMLFEPSFVNDIDVNENDVVHFCSVDLVDSPMRDAHYQLITKTLNANGT
                     VVFDPNVRLPLWDNAEDLRQTIHTFLPLAHIVKVSDEELEFITGIHDENEAIQSLFTG
                     NVTVVIYTKGADGAAVYLKNGINHYHSGYKVKPVDTTGAGDAFIGAVISRILATDVLN
                     LTQLFENEGEEILAFSNRVAAIVTTKYGAINSLPTLQEVEQAF"
     gene            complement(25926..26033)
                     /locus_tag="PF788_000933"
     CDS             complement(25926..26033)
                     /locus_tag="PF788_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303207.1"
                     /translation="MHCIAGFLILLTKLNMTRELKNDVTSLCIPIPITT"
     gene            complement(26105..26821)
                     /locus_tag="PF788_000934"
     CDS             complement(26105..26821)
                     /locus_tag="PF788_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000688500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6303208.1"
                     /translation="MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVL
                     EQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDPVGNIIFVTSHSELTYLTFVYKV
                     AAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
                     FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKER
                     IVYFKNKEHCYASVRNVKKI"
     gene            complement(26840..28133)
                     /locus_tag="PF788_000935"
                     /pseudo
     CDS             complement(26840..28133)
                     /locus_tag="PF788_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001670396.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GHKL domain-containing protein"
     gene            complement(28158..28298)
                     /locus_tag="PF788_000936"
     CDS             complement(28158..28298)
                     /locus_tag="PF788_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic lactone autoinducer peptide"
                     /protein_id="HDG6303209.1"
                     /translation="MNTLFNLFFDFITGILKNIGNIAAYSTCDFIMDEVEVPKELTQL
                     HE"
     gene            complement(28295..28864)
                     /gene="agrB"
                     /locus_tag="PF788_000937"
     CDS             complement(28295..28864)
                     /gene="agrB"
                     /locus_tag="PF788_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory gene regulator AgrB"
                     /protein_id="HDG6303210.1"
                     /translation="MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLI
                     VMYTIAYILNIFLFTLITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNF
                     HINFLIMIILTVISLGVISVYAPAATKKKPIPVRLIKRKKYYAIIVSLTLFIITLIIK
                     EPFAQFIQLGIIIEAITLLPIFFIKEDLK"
BASE COUNT         9520 a         4664 c         4964 g         9838 t
ORIGIN      
        1 tggatgcgat gagccgcatt gagaccgcaa ggtctctttt tttatgtcta aaacgtcaaa
       61 ataaaagcaa acacaaagaa agatggcttg gcgaagtgaa aacgtttgaa tctgacgaaa
      121 cgagaaatgt aaagtataat aaaaagcagt cataagatga tttcaattag aaatcaattt
      181 atgactgttt ttcttactat gtgttaaatt aacaatgaat ataacatctt attttcatta
      241 atataaatat tggaaggatc gaaatgattt acacgttgtt tgagttgtat taaatcatca
      301 tgatctttaa gttgaatacc aataatgaca gtacctgtat tttgagaaga tttttttaag
      361 tattcaaatt tagtaatatc gtcttgaggt cctaatacgt catttacaaa ttctctcaat
      421 gcacctggac gttgagggaa atttaagata aagtaatgct tcatttcttc gtatagtaat
      481 gaacgttctt caatttcttt cattcgatta atatcattat taccaccact aatgacacaa
      541 accactgttt tacctttaat atgatcttta tagttttcaa gcgcacttac acttaatgcg
      601 ccagcaggtt ctgctacaat tgcttgtttt gaatacatat ctaaaatcgt agaacaaact
      661 gcaccttcat ctacttgaac gtaatcatct acattttctt ttgcaatttc aaatgtaata
      721 tcgccaactc tagctacaga tgcaccgtcc acaaatttat cgatattagg caatgtgact
      781 acctgattat ttaccacaac agattcatac atactacttg cacctgaagg ttcaacacct
      841 ataattttcg tggtaggtga ataggtttta aagtaagtac taatacctga aattaaaccg
      901 ccaccaccaa ttgcggcaaa tagataatca aagttaacat tgtcagactt tgcttgttct
      961 agcatttctt tagcaagcgt accttgtcca gaaattgtat gaacattatt gaatggatct
     1021 ataaagttca tttgatgttc acttgtataa gttaaagctt cagctaaaca gtgatcaaat
     1081 gtatcaccag tgagtacaac ttcaacgtta ctatttccaa agaactttac ttgatttacc
     1141 ttttgtaaag gtgtagtgac tggcataaag ataacagcgt ttaaattaag ttttttagct
     1201 gtataggcaa caccttgagc atgattacct gcacttgcac atgtaatacc tttactttta
     1261 gcttcatctg ataaaacaga aatagcgttg taagcacctc ttaatttaaa agaacgtacc
     1321 cattgtaaat cttctcgttt taaatagact ttacaatcat acttttgaga taagtaatgg
     1381 tctaattgta aaggtgtttc tttgacaata tctttaagtc ttaaaaatgc ctcatcgata
     1441 tctttcgtag aaactgttgt tttgactgtc ataatattca actcccttaa agtgattttt
     1501 catatttttc tattaatgat tcatattgta gggtgattgc aatgtcatct aagccattta
     1561 caagtttatt cttccaagtt tcatcaattt caaaatggaa acgcttgtct ggtgatgaca
     1621 cagtttgatt tggtaaatcg acctcaattt caacatattg tgcaagatgt tcacgggcac
     1681 ttttttctaa aacgataggc aacatcgcat ttttagtgca attcatataa aatatgtcac
     1741 tgaaacttcc tgcaataata atatgaaaac catagtcctt aagagcccaa gcagcatgtt
     1801 cacgacttga accacatcca aaattatctc cagtaattaa aatagaagcc cctttatatt
     1861 gtggtttgtt aggattgaaa tcaggattat ctgaaccatc aggtaagtac cgccattcat
     1921 caaaagcaaa tggaccaaag ccactttttg aaatacgctt taagtgtacc ttaggaatga
     1981 tttggtctgt atcgatattg tcgttgaaga gagggactat tttaccttta tatgttgtaa
     2041 taggtttgat tgctgccatt taaacaacca cctttcttac gtccacaaat ttaccatgaa
     2101 tagctgctgc tgctgccata gcaggggata ctaaatgtgt tcttgcacct ttgccttgtc
     2161 gtccttcaaa gtttcgatta cttgtagatg cacaatgtac gccctcaggt acttggtcag
     2221 gattcatgcc taaacacatt gaacatcctg gttcacgcca ttcaaatcct gcatttttaa
     2281 agatagtatc tagacctaat ttttctgctt ctttttttac tgtacgagaa cctggtacga
     2341 caatagctgt aatatttgga tgaactttat ttcctttaac aatatgacta gcttcaatca
     2401 aatctgatag tctagcattt gtacatgaac cgagaaaaac ataccctaag tcgatgtctt
     2461 cagctttttg acctggttct aaccccatat aatcatacgc acgttgatcg ttgatatcat
     2521 tgatttcagg gaatggttca ctgaaattaa cacccatttc aggattagtt ccccatgtca
     2581 cttgtggttc taatgttgaa acatcaagtt caattacacg atcaaatatc gcgtcgtcat
     2641 cagaatatag ctcacgccac ttatcaactg atttagcgaa gttatcggca aatggtctcc
     2701 ctttaacata ttcaaatgtt atatcatcag gttggattat gccgtatttg gcaccacctt
     2761 cgatagccat gttacaaata gtcattcgac catccattga aaggttttta attgtttcgc
     2821 cagtaaattc caaagcatag cctgtaccaa agtcaacacc atacgtttta attaaatgca
     2881 gaataatgtc cttagcatag acgcctgttg gtaaggtacc attaatatcg atttttaagt
     2941 ttttgggttt tgtttgccat agcgtttgag ttgcgaaaac atgttcaact tcacttgttc
     3001 caattccaaa tgcaatagca ccaaatgctc catgtgttgc tgtgtgagag tcaccacaaa
     3061 cgattgtctt gccaggctgt gtaagtcctg tctcaggtcc taccatgtga acaatacctt
     3121 gttcatcaga acccatatca aaaatatgca ccccaaaatc tatggcgttt ttttgtaatg
     3181 ttgtgatttg tttgtttgca atttcatctt taatattgaa tatatcaata gtaggaacat
     3241 tgtgatcgag tgttgcaaat gttaaatctg ggcgtcttaa ttttctgttt tgaagcctaa
     3301 gtccttcaaa tgcttgagga gaagtaactt catgtataag gtgtaaatca atgtataata
     3361 gttgcggttc gcccaatttc ccgtataaca catgtctgtt ccacaccttg tcaaataatg
     3421 tttgacccat ttacatctcc cccttagtga ttcaattttt gagatagaat ttcgaaaata
     3481 tcagtagtat tcaatttgcc gcctaaatct gctgtcgttt gcccatgttc aatcatgcta
     3541 taaatatgtt gttctaattc atctgcagca tctggttgat ttaagctttc acgtaaacac
     3601 atcgctaaag atagaatcat tccaaatgga ttggcaacgt ttttacctgc aatatctggt
     3661 gctgatccat gaataggctc atacaatctt ggaccatcgt tactaaaact agcagaaggt
     3721 gataaaccaa gtgaaccagg aatcactgaa gcttcatcac ttaaaatatc gccaaataag
     3781 ttttcacata cgatgacgtc aaattgtttt ggatttgtga ttaaatgcat actacaagca
     3841 tcaacaagta agtgatttac tgttacttct ggatataatt gacttacttc atttacgact
     3901 ttgcgccaca atttactaga agctaataca ttttctttat caactgatgt tagttttcct
     3961 cgtcttgaag cggccaattt aaatgctacg tgaacaatgc gttctatttc ttctcttgta
     4021 taagtaagag aatctaaggc ctcgtgatta ttaaaatgtc taggttctcc aaaataaata
     4081 ccacttgtca attcacggac tataactaaa tctgtgcctt caacgcgttc ttcctttaaa
     4141 ggtgataaag aactagcgcc tttgacaacg gtagtggggc gtatatttac aaataaattt
     4201 aaggatttac gcaattttaa taatccttgt tctggtcgat tgttaggatc tgtccattta
     4261 ggtccaccga ttgcacccag taaaatagca tctgctcttt tacacgcatt taaggttttc
     4321 tcagttaaag gctcgccgaa tgtatcaata gaggcaccac caaattcgtg gtgctctatt
     4381 tgataattaa agttatattt attacttata atttcaagca atgatagaga tccgttcaaa
     4441 atttctggac cgattccatc accaggtagg gcaacaatgt tataagtcat aattaattac
     4501 ctaccttctc aacattttca gctgcaaatt tagcatgtgc ttctacgtat gctttacaag
     4561 aggcttgtaa aatatcatga tcaataccaa agccattgac agtcttacct tcaatcaata
     4621 aatttacatg tacttctgct tgggcatcag taccttcagt gacagaatta atacgataat
     4681 caattaattc tgtttctttc tggaaaatac gatcaactgc attgtaaatt gctacgattg
     4741 aaccagtacc aatacttgaa tcctggtaaa tatgaccctc tttatcttta acaacaacaa
     4801 cagcactttg aaggccgcta gagacatatt gtagttgcag tgtttccaat ttataaagtg
     4861 cttgatgctc atgctcagaa ccttgaataa tcgcatgaat atctctatct gaaacagatt
     4921 tctttttgtc cgcaatggcc ttgaattgtt taaataaatc tatttgcgct tctttatcaa
     4981 tgtcataacc taatgctttt aacttctctg agaaggcgtg tttaccagat aattttccta
     5041 atggaagttc agtcgtgctt acaccaacaa gttgaggtgt cataatttca tatgtttcac
     5101 gatgttttaa tacgccatct tggtgaatac ctgattcatg actaaatgca ttttggccaa
     5161 caattgcttt atttctaggc actcgaatac ctgcatatct tgaaattaaa tccgatgttt
     5221 ttttagtttc ttcgagatta agagcagttt gagcaccata atgatcattt cgaacgtata
     5281 gtgcaagcgc gacttcttca agtgctgcat tacctgctcg ttcaccaata ccatttacag
     5341 tgccttcaat tcgtctcgca ccgccttcaa ttgcagctaa actatttgaa acagccattc
     5401 ctaaatcgtc atggcaatga gcactataaa taatttcatt tgaagatgtt acagattctg
     5461 ttaaggtttt gaaaatatgt gcatattcat catggtaact gtagccgact gtatcaggaa
     5521 tattaataac tgtagctcca gcgtcaacgg cagtttgtac acatttcact aagaatggta
     5581 attcagtacg cgttgcatct tcaggtgaaa attgaacaac gtcaaataat tgtttcgcgt
     5641 atgtgacatg ttctttaata gatgctaaaa cgtcttcttg agacatttta agtttatgtt
     5701 caagatgaat aggtgatgtt gctataaaaa catgcacgac cggcttcgct gcatcttttg
     5761 ttgcttcata tacagcatcg atgtcagatt ttttacatct agctaaacca catacagccg
     5821 ttgttgttaa tgtttgtgca attgcttgaa cagatttaaa gctacctgta cttgaagcag
     5881 gaaatccagc ttcaataaca tctacacccc atttttctaa ttgcaatgca atacgcaagc
     5941 gttcatcaaa agtaaaattc actcctggtg tttgttcacc gtctcttagt gtcgtatcaa
     6001 aaatttgaat atgactactc atatttaaca actcctcatt gtaggtctat cttatttttc
     6061 aatgctttta gatttaataa aaggcatcat ttcgcgtaat tcacgaccaa ctttttcaat
     6121 ttgatgacca tgttgttctt cgcgtaattt ataaaattct ttgaatccat ttttattgtc
     6181 ttcgataaag cgattactga agttaccatt ttggatatca gttaatacag ctttcatatt
     6241 ttctttaaca tctggtgtga taacacgtgg tcctgaaaca tagtcaccaa attcagcagt
     6301 atttgaaatt gagtaacgta cattttccat accgccttca tacatcaaat caacgattaa
     6361 tttcatttca tgtaatactt caaaataagc taattctggt tgataacccg cttctactaa
     6421 tgtttcaaag ccactttgaa ttaatttcga tacaccaccg caaagtactg cttgttcacc
     6481 aaataaatct gtctcagttt cttctttaaa tgttgtttca ataacacctg cacgagttgc
     6541 accaatacct tttgcataac ttaaagcaat attacgtgct tgacctgaag cgccttgttg
     6601 aataccaaat agtgatggta cagcagaacc ttcaacaaat gtacgtctaa ctaaatgacc
     6661 cggtccttta ggagctacta aaaatacatc aacatcagct ggtggttgaa taacaccaaa
     6721 atgaatgtta aagccatgag caaatgcaag cgcattatgt ttttctaaat ttggttcaat
     6781 ttcgtttttg tatacatcac cttgaatttc atcaggtaat agcaccataa ttacatcagc
     6841 ttgcttaact gcttctgcaa cagggaacac atcaaatcca tcttctttag ctttgtcaaa
     6901 agaacgacct gggcgaatgc cgatgactac atcatatcca ttgtctttta agttttgtgc
     6961 atgcgcgtga ccttgtgatc cataacctac tactgcaatt tttttgcctt gtaaagcgtc
     7021 cgtttttaca tcttgatcat aataaactgt tgtcataata aattcctcca aataattaaa
     7081 tattttgtgt ttcgaaaatt ctgaaatata actttgtaat agtggcagat gttaactagc
     7141 agcctatgat atatctataa ctaattagcg catcattgcc tttgtcttaa aattaagctt
     7201 cgttatcaac aaggtcgtag cattcaaccg ttaaaacatt aatttgttgt tttaattttt
     7261 taattaatat atgaagtgat gtatcatctt gaatatcgac ttgaatttcc atgttagaaa
     7321 tcccaggttg ttcagaatgt gtaacatgta atgtatcgat attatattgt aggcgaacaa
     7381 aagcacttgt aattcgattt agcgtgctga cttgatccgc aacttgtaat ttaagaattc
     7441 ttgtcattat aagccctcca tttcatgatt tgatttgcca ctcggaacca ttggggttac
     7501 agcttcagta ggggaaatac gaacctcaat taaagctggt ccttgataag caaacgctgc
     7561 atctaattgt tcttccagtt gttctggctt atcgattaag aaacctttga cgccatatgc
     7621 ttctgccatt ttcataaaat caggttgacc attaaatact gagtgtgaga agcgttgatt
     7681 aaagaactta tcttgccatt gtttaaccat acctaatgtt ccattattga ttagtacgat
     7741 tttgacatct aaaccatatt cgggtaaaag tgccatttct tggtttgtca tttggaaacc
     7801 accgtcaccg acgaaacata cgactgtttt atcaggatta gctaatttgg caccaattga
     7861 cgaaggaata ccgaatccca ttgttcctaa accaccgctt gtaacccatt gtccgtgatt
     7921 tttaaatgga taaaattgag ctgcccacat ttgatgttgt cccacgtctg tagtaacaat
     7981 tgcttcacca tttgtaattt tgccgatata ttcgattgtt tgttgtggct tacaaaatac
     8041 ttgatcttct tcaccaagtt taaatgggtg tttctgctta ttattttgac aatgtttaac
     8101 ccagtcactg tgttctatag tctcaacatt tttatcattt aaacattcta aaaatctttt
     8161 acagtctgca ataataccta aatctacatg aataacttta ttgatttctg aaggatcaat
     8221 atctacatgt acaattttgg cgttaggtgc aaaggcatca ggtttgcttg ctaatctatc
     8281 atcgaagcgg ctacctaaat taatgagtaa atcacactca gttaatgcca tgttactagc
     8341 ataagaacca tgcattcctc ccatacctaa aaatagtgta tcctcataag gtacagcacc
     8401 tagacctagt aaagtagtaa ctgttgggat ttgatgttta ttaacaaact gtgttaataa
     8461 ttgatttgat tttgattgat taatacctgc gccggctaat acgacaggct ttttcgcttc
     8521 ttttaaaagt gagatgaaag tgtcaatgtc tttattttct ggttctgtaa caacttcata
     8581 acctggaata ttgatttcgt cgcataaatc cacatttgta gctaaaacac ccatatcttt
     8641 tggaaaatca atcactacag gacctttgcg tccagaatta gctacatgga aagcttcgtg
     8701 tacgatttta gggatatctt caacacgttt cacttgataa ttttgttttg taattggtga
     8761 agtcatagat agaatatccg cttcttggaa tgcatcttta ccaatgcctg gtgtagcaac
     8821 ttgtccagtg aatacaacta gaggtaaaga gtcgcaatgt gcatccgtaa tacctgtcat
     8881 tacattagtt gcacctggac cgcttgtaac tacaacgacg ccagttttac cagatacacg
     8941 tgcataacct tctgcagcat gaacagcacc ttgttcgtgt cttgctaaaa tatgtttgat
     9001 tttaccatca taaaacgtgt catataaagg tagtacggca ccaccaggat aaccgaataa
     9061 ataatccaca ttttctttaa gtagagcttc tactagcact tctgatcctg aacgcatatc
     9121 atttaaagtt ttttcattta gttgttcagg ttcaagtgat tcagccattt ttaaagggtc
     9181 aatattttgg tttacttcat gttgagtttt agacatttta accatctcca atataaaaat
     9241 aaattaaatt aaattctcag ggacttgcat gacgccacct gtatttgcgc tagttactag
     9301 ggcagtataa cgagctagat aacctgtttt tactttcgct ttaaatggtg ttaaagattc
     9361 tcggcgacgc gctagaacat cttcaggctg gtttacgttt aatgtacgat ttgttaaatc
     9421 aatagtaatc tcatcaccat cttcaattaa ggcaattggt ccaccagatg cagcttcagg
     9481 ggaaatatga ccaactgcaa tacctcttgt ggcaccggaa aaacgcccat cagtaattaa
     9541 tgcaacatct ttacctaagc cgcgaccaac aatagaggaa gtaggtgcta acatttcagg
     9601 catacctggt ccacctttag gtccttcata tctaatgaca acgacgtggc ctgcacgaac
     9661 ggtacgattg tctattgctt caacagcttc atcatgcgaa ttgaaacaaa ttgctttccc
     9721 agtaaatgtt ttgatagatg gatcaacgcc gccaacttta ataactgcgc ctttaggggc
     9781 gatattacca aataagatag ataaaccgcc ttgtgcatca tatggtgcat caagagggtg
     9841 aatgacatca aagttcttaa tttctttgcc ttcgttattt tcacgtaacg ttttgccagt
     9901 aactgtgatt ctatctgggt gtaacgtgcc atctttcttc atcaattcat taataattgc
     9961 tgggacgcca ccagcttcat gcacatcatg cattgaatac gatgaactag gtgctatttt
    10021 tgataaatat ggcgtgcgtt tggcaatagc attaatgcgc tctaagtcat aatcaatacc
    10081 agcttcattg gcaatggcta acgtatgcag taccgtgttt gttgaaccac ccatagccat
    10141 atcaagtgca aatgcatcat caattgcttc gcgagtaacg atatcacgtg gttttaaatc
    10201 atttttaata ttttcaacta atttaaaagc tgcttggcga atcatttctc gtcgctgatc
    10261 actgactgca agtgcagtac cgttgtatgg taatgttaga cctaaaactt ccatcaaaca
    10321 gttcattgaa tttgcagtaa acatcccagc acatgaacca caagtagggc aggcattttg
    10381 ttccatatct aaaaattctt ctttagaaat cgatccttct ttaaatgcgc cgactgcttc
    10441 aaacattgat gaaagtgtta atgcttttcc atgtgcagat aagccagctt tcattggtcc
    10501 accagagcaa aagatagctg gtacgtttgt cctcatggct gctaaaatca taccgggtgt
    10561 aatcttgtca caattaggaa tgtaaaatac gccgtcaaac caatgagcgt taattacagt
    10621 ttcagctgca tctgcaataa tttcacgtga tggtagagaa tatcgcattc cgatatgtcc
    10681 catagctatt ccatcatcaa caccaattgt attgaattca aatggaatgg caccggcttc
    10741 tctaattgct tctttagcta tatctgcaag ctctctcaag tgaacatgtc caggaacaat
    10801 atcaatataa gagttacaaa tagctacaaa tggtttgttc atatcagttg gactttttag
    10861 cgcgcccgtg gcatgtaaaa gacttcttgc tggtgcttgg tgatctcctt ttttgatcat
    10921 gtcgcttcgc atagtaaatt cccccgtaaa ttttaatgat taatcatgtt ttatagtaat
    10981 aaaaataagt aattgaaaga taaaacataa aaaaacgtcc caatattatt gggacgttta
    11041 caagtcccat tcaaacagaa ataggactta aagcgtttag taaatattta ctaacgttcg
    11101 agtcctaaag agtataataa aataataata tttgaagttg tcggttgatg ttcagtatat
    11161 tgattaagca ttttattata ctccttccgt gaatggtata tatcacttta atagttagaa
    11221 ttgtctaaaa atttgataaa tttaatttac tatatctgct ttagtatgtc aacaaatatt
    11281 ttaaattttc ttacaattaa ctttgaatag ataatctgtt tcaaagataa gaaatttaag
    11341 ttgaaatttg ttacaatata aaggttaaat ataaagttag atacgattga acaatggata
    11401 atcattttta tgaatgaaaa gcataatata ggagaatcaa cattgataaa gataaataat
    11461 ttagatgaaa tgaatcaatt tgctatattt ttagttgagc aattgaaaag tggtgatttg
    11521 attttactta acggagattt aggagcaggt aaaacaacgt taacgcaatt tataggaaaa
    11581 gctcttggtg taagacgtac gattaattcc ccgacattta acatcattaa atcatatagg
    11641 ggtaaaaatt taaaattgca tcatatggat tgttatcgct tagaagattc tgatgaagat
    11701 ttaggatttg atgaattttt cgaagatcag gcaattactg ttattgaatg gagtcaattt
    11761 ataaaagatt tacttccagc gacgcattta tctattaaca tttcaacaat atctgaaaat
    11821 acaagacaaa ttgagttgtt cgcgcaagga gaacattatg aacaaattaa ggaggcaatt
    11881 atccatgaat tcgctgctca ttgatacatc gaatcaacca ttatcagtag cattgatgca
    11941 aaacgatgaa gttttagctg aaataactac ggattctaaa caaaatcatt cagtgcaatt
    12001 aatgcctgcg attagtcagc tatttgagca gagcaaaata gctaaacagc aattagatgc
    12061 gattattgtt gctgaaggtc ctggttcata tactggctta cgtatcggtg ttactgttgc
    12121 taaaacatta gcgtatgcgt tagatgttaa attatatggt gtttcatcat taaaggcatt
    12181 ggcagcaaca atcgatcata ctgataaatt attggttcct gtgtttgatg caagacgaca
    12241 agcagtttat acaggcatat tccagtggca aaatggtcaa ttagtgacta ttttagaaga
    12301 tcaatatatg tcgatagagg cattgcgagc ttttttagaa gatttaaacc aaccatttat
    12361 ttatattggg aaagatactg taaaattaca agatgaatta caaggtgaag tgattgcgca
    12421 gctaccaaat gcatcagtca tgtatcaatt gctagataaa ccttcagacg tacatacatt
    12481 tactcctaaa taccataaat tagctgaggc ggaacgaaat tggatcaaca gtcaaaagaa
    12541 caattaaaca ttagagagat gactaaagaa gatgtgccac aagtctttga tcttgagcgt
    12601 cggagtttca atgacagttc ttggacaatt gacgcatttt atcatgaaat agagcaaaat
    12661 aactttgcga aatattttgt cttagaattt gaacaacaaa ttattggtta tttaggttta
    12721 tggattgtta tcgatcaagc tcaaattaca acagttgcaa tcgatgataa ttatagaggc
    12781 tatggtttag gtcaaatgct tttaaaatac ggaataaact atgcaagtca cacttgtgat
    12841 gtgatgagtt tagaagtaag agttaataat aaagtggcac aacatgtata tgaaaattta
    12901 ggatttcaat atggtggtaa acgtaaaaat tattatggtg aaggtgagga cgcaatggtt
    12961 atgtgggtga atttaaatga ctaaagatat attaatacta gctgttgaaa caagttgtga
    13021 tgaaacaagc gttagtgtta taaaaaatgg cagagatatt ttatcaaata cagttttaag
    13081 tcagattgaa agtcataaac gatttggcgg tgtcgttccc gaagtggcaa gtagacatca
    13141 cgttgaaggt ataacagcaa caataaacga ggctctaggg gatgccgatg tatcaataga
    13201 agatattgat gccatagcgg ttacagaagg ccctggacta attggtgcgt tactaatagg
    13261 tgttaatgca gccaaagcat tggcatttgc ttacgataag ccacttattc ctgttcatca
    13321 tattgcagga catatatatg ctaatcacat agaagagcca ttaacattcc cgctaattgc
    13381 acttattgtt tcaggtggac atactgaatt agtttatatg aaggatcatt tatcatttga
    13441 agtcattggt gaaacacgag atgacgcagt aggtgaggct tatgataaag tggcacgaac
    13501 aattggttta aattatccag gtggtccaca agttgatcgg ttggctgctg aaggtgaaga
    13561 tacttattca ttccctcgtg tttggttgga taaagatagt tatgatttta gttttagtgg
    13621 gttgaaaagt gccgtaatca atcaacttca caatcaacga caaaaaaata ttccaatcat
    13681 tgaagctaac gtagcaacga gctttcaaaa cagtgttgta gaggtgctca cgtttaaagc
    13741 tattcaagct tgtaaagaat atggtgttca gcgattaatt gttgctggtg gcgtggcgag
    13801 taataaagga ttacgtcaat ctttagcgga tcaatgcaaa gtcaatgaca ttcaattaac
    13861 tatcccaagt cctaaattat gcacagataa tgctgcaatg ataggcgttg ccggccacta
    13921 tttgtatcag caaggtcgat ttgctgattt agcattaaat gggcacagca atatagattt
    13981 agaagagtat tctgcagaat aaaataaacg tcagttatta acatgattac tatgaacatt
    14041 attgaaactg ttcatagtct tctgtcatgt gatagctgac gtttttatgt ttaaagttaa
    14101 atgctaaatt ttcgggacat tatcttttgc tcgttcatat atttttgctg gaaatgaagt
    14161 gatttttaat aattcgatgg cattacgtgt atttgctttg ccaggcttaa ttttgtaatc
    14221 aaaatgtatg ttattatttt ctattacctc attgaaatgg taattttcat aacgttgttt
    14281 taagagttca gctaactcaa tatcatgtgt tgctgcaata actctaaagt tagatttttc
    14341 atgtaaaaat gatagtactg attctgaagc ggcaattcgt tcagttgtgt tggtaccttt
    14401 aaaaatttca tctataaagc agtatatttt ttgattatct ggaatttcaa caatacgctt
    14461 aatagatttt aattcagcca taaaataact atcgcctgat aacacatcat cggcatttgc
    14521 cattgacgtg aacacaattc caggttgata tacaaatttg cttgcggtaa ctgtttgtat
    14581 agccgatgca agaataatgt ttattgctat ggatttcata aatgttgatt tacccgaagc
    14641 attagaccca gttaacagta tattttgtga tagtgagaaa tcattggcta ctgcatctgc
    14701 tatgagtgga tgtgttaact cagagaatac tatgccatca tttgaatcat caatttgtgg
    14761 ttcagtataa cattctagcg ttctacgata cattgctaat gcataatgat tatctaattc
    14821 agctatgtaa tcgaaacaat ttttaagctc attcatatgt gttgtatagc ttttttgaat
    14881 tgaatgaaat aaaacataat caagcatgaa aataagttta actagtttaa ttaccatagc
    14941 tccgatatct tcatcattaa cttcagctaa aacactcgtt aaatgacgtg ctgttctaaa
    15001 ttgcttaaaa ttgacttcag gttgtggagc atgtttaatt tttgagatag tatagccttg
    15061 ttttaaaaca ttggatgcat aaaagataga ttttaagtca tcctcatatg tacgctttaa
    15121 agttgctgat aaaatgatat taaataggca actcataaga aataataaaa taccaacttg
    15181 tgaattaata aatataactg caaatgagat aactggtaaa aacgggcata gaaacaatat
    15241 attttgacgt tttaccggtg tgatttggtc tggaaatgtt ggataaacag ttttaccaat
    15301 caaagctaaa tgatatgtta cgttttttct aaattcagca ttatcattaa ataaactaag
    15361 taatgatttg ttcgtaattg aaagcattcc acgtaaacag gcatatagct tcatttcacc
    15421 aatagctgtt aaattataat tcatcttatg aaagattgca ttcatattta agtcggacca
    15481 agttttatca tcaactaatg aatgtgattc aaatttttcc ttgtagagct tatactcata
    15541 gtcgaaatgt gagttcggtc tgataaaagc ttctaatgga gaaatcgttt gccataatgt
    15601 ttccatagat tttaatagac gttgacgact catgtatcgt ccaacaattc ctattacaga
    15661 tgtaagtaga ataattgcta taacaaatat taaaaatgtt tgatttgtgc tcataagtat
    15721 ccccttattt atttttaata ataataaaaa tatacttcaa tattattatt atttcataaa
    15781 gaaaatgtct taacaatgaa ttttgataaa aacaatgtca atagagaaca tgcgtactta
    15841 tcaacaaaga gtgaataact tgtggataaa aggtgttgat aacgtcattt attgtggata
    15901 tcaggtggga aaacagaaaa taaatgattg attagtgtta atttacttgt gggtaactag
    15961 gataagtctg tggatagcta taatatcagc gtttttattg tgaataaaaa aattaaaatt
    16021 tgtaaaaaaa taactctaac tatagcgatt ttacagttag agttatgtat atttttatag
    16081 tttttgttgt aattcttccc atttagacat agcgtgttct aatttttgtt cgctatcttg
    16141 tttttggata gctaattcgt ttgctttttg tggattgtta tacacttctg gttgggttaa
    16201 ttgctcgtct atttgtaaga tagtagtctc taaagtttct atttcatttt cacactcgga
    16261 tatttgtcgt tcaagtttgc gttgttcacg tctttgttct ttttggttat gatacgacga
    16321 ttgttccata gactttttat gtgcttgtac gttaactgac tgttcttctt ggtgcgcttt
    16381 caacgcttcc gcttcctcaa ctttttcaat gtaatattga taatctccta aatacatctt
    16441 tccgccatca attgttaaat caaatacctt gtttgctaat tggttaataa agtaacgatc
    16501 atgggaaaca aatagtattg ttccttcaaa atgttggagt gcttgctcta acatttcttt
    16561 tgaatctata tcgaggtggt tggtaggttc atctaaaata agtacattgt cacgttgcaa
    16621 cataagtagt gctagtagta aacgtgcttt ttcaccacca gataaatcat taattatctt
    16681 tttaacatcg tcttgtacaa ataagaaacg tccaagaact gctcgaatat ctttttcatt
    16741 cattaacgga tattgatccc acacataatc taaaatcgtt ttactagatt taaattctgc
    16801 ttgcttttga tcataataac caatttgtaa atttgcgccg aaagtaatat cgccattaag
    16861 cgctttttgt tgattagcaa tagttttaat taaggtcgat tttccaatac catttggccc
    16921 aatgattgct atatgatcgc ctttagagac ctctatactc ataggtttgg taattgcagt
    16981 ttgataaccg atttctaaat tttttacatg catgacgtca ttacctgtat tccggtcaaa
    17041 gccaaattga atatttgcac ttttggcatc taacattggt ttatcaatgc gttccatttt
    17101 ttctaaaatc ttacgtctac tttttgccat tccacttgtt gaagcacggg taatattttt
    17161 ctcaacaaaa gtttctaatc gttttatttc tgcttgttga ctttcatatt cttgcattcg
    17221 tttttgataa tataaatccc gttgctgtat aaattcctcg taattaccaa catagcgttt
    17281 gacatcacct aaagccacat cataaatttg agtaactatt ttatctaaaa agtaacgatc
    17341 atggctgatg atgacgattg cacctttaaa ataacgtaga taatcttcaa gccactttgt
    17401 cgtttctaaa tctaagtggt tagtaggttc atctaaaagt aataaatcag gttcgtttaa
    17461 tagcatttga gctaaagata aacgtgtttt ttggccaccg ctaaaatcat tgataggttt
    17521 attgaaatct tcttcactaa aatttaaccc gtaaagtact gttttaattt tactttcata
    17581 ttgatatcct tctaattgtt caaattgatt cgataaagat tcataacggg acatatgtgt
    17641 tttatatgta tcactatcgt aatcatttgc atgttttgat aaacaatctg tttcttcttt
    17701 gattaagctt tccattcgtt taatatgttc aaatggtttt gacatttctt caaaaactgt
    17761 tgcattagaa tttaaagtca tttgttgagt taaataacct agttttaagt ttttaatttt
    17821 tgacacattt ccagaatcat agttttctac gccagctata attttcatca atgttgattt
    17881 accggcgcca tttcttccta cgataccaat tcgttcacca gtttttactt caaaatcaac
    17941 atcagtaaat atatcttcac catcgaacga ttttgatata tgattgagtt gtaaaagtat
    18001 cattcgatct tcacctttcg tctttctcaa attttattaa cttatgaaaa aagtcgtaat
    18061 tattacatta ataaccattt tacagtataa aacgccgtct tgaaactaag atatttattt
    18121 ttaaaattca ataatgtata atatttaggt attcattgta atcaattatt tgttttttaa
    18181 taatctaaca attacgctct aactcgtttg aatacataga tataattcat tcaaacacga
    18241 aggaggaaat agcgaatgag tgaccaagtt aaaattcctc gagcaacttt aaaacgtttg
    18301 ccgttatatt atagatttgt cagttcatta aaatctaaag gtatagatcg tgtaaattca
    18361 aaagcgatta gcgatgcgtt acaaattgac tcggcaacaa ttcgtcgtga cttttcatat
    18421 tttggcgaat taggtaaaaa agggtacgga tataatatag atagtttatt ggatttcttt
    18481 aaatctgaac taagcgagag tgacatgatc aaaatcgcaa ttgtcggagt tgggaaccta
    18541 gggaaagctt tgctcacata taacttttca atacatgacg atatgacgat tacagaagcg
    18601 tttgacgtaa aagaagatgt tattggccag aaaataggga acgttattgt taaagataac
    18661 gatgaattaa taacaacatt gaagaaggaa gaaatagatg ttgtgattct aactacacca
    18721 gaaagagttg cacagaaagt tgcagatgaa ctcgtccaag ctggtgtgaa aggtatttta
    18781 aacttcactc ctggtagaat taatacgcct tcagatgtgc aagtacatca aattgactta
    18841 ggtatagaat tacagtcatt attattcttt atgaaaaatt acagtgaata aatgtgatgt
    18901 tagctttgaa tgattaacct tgttatatct ttaattaatt atagaacagt ctgggactaa
    18961 gtatgtctca ggctttttct gttatgtttg aaaatgaaag gaaaaactgt tgtgttgata
    19021 aatatagtat aggttaataa attaacacgt agagatataa tgatgaatcg taattaatcg
    19081 ccttccttat atgaatataa tataaatatc aaaaatattg tgtataaggt tgaaaacaag
    19141 aaaatcatca cctataatac atactaaact tatcggaaat gagaggttaa gattatgtgg
    19201 atgattttta gtggcttaat tgtcggggga ctcttaggtt ttgtcatgca aagaacaaga
    19261 ttttgtttaa caggtggctt tcgagatatg tatgtgcaaa agaataataa gatgttctat
    19321 gcattattaa tcgctattac tattcaaagt ataggattat tgattttgac ggcaacagat
    19381 attttacaaa ttcctgcaca tagttttcca atattgggaa caattatagg ttcttttatt
    19441 tttggaattg gaatagtatt ggctggagga tgtgcaacag gtacttggta tcgcgctggt
    19501 gaagggctaa ttggtagttg gattgcatta gtattatatg ctgttactgc agcaatcact
    19561 aaaacaggga ttttaaagcc agtaatggat aaaattaatc aaccaacgaa tgtaaatagt
    19621 gatatgtctc aaacaactgg cattccgttt tggggattag tcgttatatt aactataatc
    19681 accatttttc tagttgtaag aacactcaat aataagaaag ttcgagttgc tgttccaaaa
    19741 ctaaagcaac gttatacagg tattagatat taccttttcg aaaaacgata ccatccattt
    19801 attgcagcaa ttgtaattgg acttatcgca ctcttagctt ggccaatgag tgcatcaact
    19861 ggaagaaatg acggtttagg tataacaacg ccttcagcaa atttagtaca ctttttgatt
    19921 acaggtgaaa ctaaatttat tgattggggt gtctttttag ttctaggaat tttcattggt
    19981 tcatatattg cagctagagg atcaagagaa tttaaatggc gattgccaga caagattaca
    20041 atacgaaaca gtgccattgg tggcatatgt atgggatttg gtgcgtcagt tgctggtggt
    20101 tgttctatcg gtaacggttt ggttgaaacg gcaacgatga cttggcaagg atggattgcg
    20161 ctagcatcga tgatagttgg tgtatggaca atgagtcatt ttatctttgt tcgtccaatg
    20221 aaaaaagtac accaacaatc tgcaaaggtt aaacagcaaa cgcaaatagt atagaagatt
    20281 attatgcaaa tgatgttgat caaataaaag tgattggaaa aggagaaata attatgatac
    20341 acgaattagg tacagtagga atggtatgtc catttccgtt aattgaagcg caaaagaaaa
    20401 tggcaacatt gcaatctgga gatgaattaa aaattgattt tgattgcacg caagcgacgg
    20461 aagccattcc aaattgggct gcagaaaatg gttatcctgt aacaaactat gaacaaattg
    20521 ataatgcttc atggacaatt acaattcaaa aagtttaacg ttatcatttt aacaataaaa
    20581 tagatattag attctatggc tacttccgct aatttaaaag tgagtaagta gtcttttttg
    20641 ttttagttca tgaaatcatt tttatatagt gtggcacatt ttattccaaa agatgtaata
    20701 aaacttaacg catttttgct ttttataaat tgtcagatta ttatgaaaaa aagggagtgg
    20761 taagtatgaa tcttaacgat acgatattta tgtttttgtg tacattatta gtttggttaa
    20821 tgacaccagg attaagttta ttttatggtg ggttagttca atctaaaaat gcgcttaata
    20881 ctgtcatgca aagtatggca gcaattgtgc ttgttacatt tgtatggata acagttggtt
    20941 ttacaattag ttttgggaat gggaatttat ggttcggaaa ttgggaatat acttttctta
    21001 atcatgtagg ttttgcgact caagaagata ttagcccaca tattcctttc gctttgttta
    21061 tgttatttca aatgatgttt tgtacgattg caatttctat tttatctggt tcaatcgctg
    21121 agaaaatgaa gtttattcct tatttattat tcgtagtaat atggactgct cttgtataca
    21181 gtccagtagc acattgggtt tggggcggcg gttggattaa caaactcggt gtattagatt
    21241 tcgctggagg tacggttgtt catattacat caggtgtttc tggtttagta ttagctatta
    21301 tgattggaaa aggaaacaaa cattctgaat caacaccaca taatcttatc attacgttga
    21361 ttggcggtat attcgtgtgg attggttggt atggatttaa tgtaggtagt gcttttacat
    21421 ttgataatat tgcgatgctt gcatttacaa atactgtcat ttcagccagt gcaggtgcta
    21481 taggttggtt aattttagaa tatattttta aaaagacgac aagtttactt ggacttttac
    21541 tcggtgcatt agcaggatta gttgtcatta ctcctgcagc aggatatgta acatatctta
    21601 gtgcaacaat aatggcttta ataggaggta tctgttgtta tattgtcatt aattacatca
    21661 aggtaaaact aaaatatcat gatgcattag atgcatttgg tattcatggt gttggtggta
    21721 ttattggtgc tgttttaaca gcagttttcc aaagtaaaaa agccaatcct gacattgaga
    21781 atggctttat ttatactggt gacatacata ttatacttgt acaaatatta tgtgtaacag
    21841 cagttgtaat ttttagtata gtcatgacgt ttattattgc gaaagtaatt aaattaatta
    21901 caccattatc tgttacggaa caagaaacga atataggatt agacaagatt gttcacggtg
    21961 aacatgctta ctttgaaggt gagctaaata gattcaataa acatattcga tattagaata
    22021 tatttacata gaatattcat tgtcctgaca tttaactaaa ggttgatgtt gggacatttt
    22081 gttatacaaa agttttattt tgaaatcttt ttatgaaaga agcagaaata ttatttaaag
    22141 cggttacaca tatgctaaaa taaggctaag tgtcacaaat aatgataggt gaataagtat
    22201 gaaaaatata tctgatattg ccaaattggc aggcgtttca aaaagtacag tatctagatt
    22261 tttaaataat ggatctgtca gtaaaaaaac aagtgaaaaa ttaacaagaa ttatagcaga
    22321 acatgactat caaccgaatc aatttgctca aagtttaaga gcgagacaaa cacaccttat
    22381 tggtgccatt atacctagaa tgaattcata tgcagtagat gaaacaatca aaggattggc
    22441 aaaacaatgc caaaaatatg aatcacaatt aattttaaat tacacaggtt taaatatcga
    22501 agcagaaata caagcgcttg aaacattagc acgcagtaaa gtagatggta ttgttttaat
    22561 ggctacagac ataacagaga gacatattga agtcattaat aaaatgaatg taccaatcgt
    22621 tattgttggt caacaacatg aacaacttca tagtattgtg catgatgatt ataaagcagg
    22681 tcaaattata ggcgaatgga ttggtcaaca gggatatcaa caagttgaag tgtttagtgt
    22741 aagtgaaaaa gatattgcag ttggtataca tagaaaacgt ggtttacttg accagttagc
    22801 taaataccaa attaaaccta atatacatga aacaaatttt acttatgtgg aagcacaaaa
    22861 agatgttgca aatgttttgg aaaatgtgga gcaagtagat gcggttgttg gagcaactga
    22921 tacgattgca ttagctgcct ataaatatta ttctgataaa aaagatgtta tgaaaccaca
    22981 tcaaatatat ggttttggtg gtgacccaat gacacaatta gtgtctccat cgataaaaac
    23041 aattcattat aattattttg aagctggcca atgcgcgatg gaagagatac aacagatgct
    23101 taaaaagcaa gatatgccat atagcgtcac agtagatgtt aatatttaga cgctgtattt
    23161 tttaaaataa atgtggaacc gataccatat aactataaat ggataggtta aaagttaaag
    23221 aacgtaggta aaatttgcta taatagaata taaattgtta ttagcataaa ttataaaagg
    23281 aggactgggt aaatattatg accgaatgga ctagagaaga acgttatcaa cgaatcgagg
    23341 acgttgatac tgagtatttt aaaacattaa aacaacaagt tgatcaatca aaatttcgtc
    23401 aacaatttca tatacaacca gaaacaggct tattaaatga ccccaacgga cttatttttt
    23461 ataaagggaa gtattatgtt tcacatcaat ggttcccatt aggcgcagta catggcttaa
    23521 agtattggta taactacacg agtgatgact taataaactt taaaactgaa gggccaattt
    23581 taaatccaga tactaaatat gacagccatg gtgtatatag cggtagcgct tttgaatata
    23641 acgggcattt atattatatg tacacaggaa atcatcgaga taatcattgg caacgacatg
    23701 cgagtcagat gatcgcacga ttgaaagaag acggttcagt tgaaaagttt ccaaagccag
    23761 taattagcca acaaccagaa ggatatacga gtcattttag agatcctaaa gtttttaaat
    23821 atgatgagaa atattatgca atcattggtg cacaaaataa tgatcagcaa ggtcgattat
    23881 tactttataa tactgaagat ataattaatt ggcattattt aggtgaaata aatacagagt
    23941 tggatgattt tggatatatg tgggaatgcc cagattactt taatgtagat aatcaagatg
    24001 tcatacttat ttgtccacaa ggtattgaac caaaaggcga tcagttcaaa aatatttatc
    24061 aaagtggtta tatacttgga aagtttgata ttgaaaagtt aacatatgaa catgaaaatt
    24121 ttgtcgagct tgataatggt tttgatttct atgcacctca aacattttta gatgaaaaag
    24181 gccgacgagt actaattgga tggatggggt taccggaaat cgaatatcct actgataatg
    24241 aaggatgggc ccattgctta acaattcctc gtgtattaaa tgtagaaaat ggtcaactta
    24301 agcaacgtcc atatccagcg ttggaaaaat tacgtcacaa taaagagaca gcattaggct
    24361 acgcaaataa atttactcga aaattacatc cgtatgaagg taaacagtat gaattaatca
    24421 tagatatttt ggataatgat gctaccgaag tgtactttga attacgtaca tctaagactt
    24481 cttcaacatt aattgcttat aacaagcgtg aaaataaaat aacattagat cgcagcgaca
    24541 gtggtttatt gccgacaaat gttgaaggta cgacgcgtag tacgatatta gacacgccat
    24601 taaagcaatt acaaattttt gttgatacat ctagtataga aattttctgt aatgatggag
    24661 aacgtgtttt gacatctcga attttcccga cagaagacgc actaggtatt aaaacatcaa
    24721 cagaatcagg gcaagtatat ttacaattta ctaaatatga tttaaaggat gaacataaat
    24781 gagacgtcta ttttcaatag gagaagcgtt aattgatttt attccaaatg ttacaaatgc
    24841 gaatttaaaa gatgttcaaa catttacgaa gcaaattggt ggcgcgccat gcaatgtagc
    24901 ttgtacagtt caaaagttag gacaacaagc gtatatgatt acacaattag gtaatgatgc
    24961 atttggagat agcattattg aaacgatatc aagtattggt gtagatgtat caaaagtgta
    25021 tcgcacgaat gaagcaaaca ctgcgttagc ttttgtgagt ttgactgaag cgggcgagcg
    25081 agatttttct ttttatcgta agccctctgc tgatatgtta tttgaaccaa gttttgtgaa
    25141 tgatattgat gtgaatgaaa atgatgtagt acatttttgt tctgttgatt tggtcgatag
    25201 tccgatgaga gatgcacatt atcaattgat taccaaaaca ttaaatgcaa atggtactgt
    25261 cgtatttgat cctaatgtaa gattgccatt atgggataac gctgaagatt taagacaaac
    25321 tattcatacc tttttgccat tggcgcatat tgtaaaagtt tcagatgaag aattagaatt
    25381 tattacaggt attcatgatg aaaatgaagc cattcaatca ttatttacag gtaatgttac
    25441 tgtagtcatt tatacgaagg gagcagatgg tgctgccgta tatttgaaaa atggtattaa
    25501 tcattatcat agtggctata aggtaaaacc tgttgataca actggggcag gggatgcatt
    25561 tattggtgca gttattagca ggattttagc aaccgatgtg ttaaatttaa ctcagttatt
    25621 tgaaaatgaa ggtgaggaaa ttttagcgtt tagcaatcgc gttgctgcaa tagtgacaac
    25681 gaagtatggt gctattaata gtttgccaac attacaagag gttgaacaag cattttaaat
    25741 aattcattta taaaacagtg taggaaacaa gttgaatctt gtgctacact gttttttaaa
    25801 acaaaataag attcacggag taggaaatta tagcatttta tttatggaaa ctgtcaattt
    25861 caaatttagt atattttgtt aaaaattgcg ccataggatt gtagagtgaa atagaaattg
    25921 ataaattatg tagtaatagg aataggtata caaagagacg ttacatcatt ttttaattca
    25981 cgcgtcatat ttaattttgt taataaaatt aaaaagccag ctatacagtg catttgctag
    26041 ttatcttgtt aaaatccaac aagatttaca attgaatacg ccgttaactg actttattat
    26101 cttattatat ttttttaacg tttctcaccg atgcatagca gtgttcttta tttttaaaat
    26161 agacaattcg ctctttcgaa tctatagatt caatattatg gcgattgacg acaaagctat
    26221 tatgacatct aaagaaacga tcatctaatt gactcagttc ttttaaatta ccataaaatt
    26281 caatttgacg gttatctaaa tgggcaatga gtctgtgaga ttttgttgat gattcaaaaa
    26341 acataatatc atcatattga acatacactg aattactgcc acgttttaat tcaatcgttt
    26401 caacgctatt atctttagac aacaattgta agcgtgtatg tgcagtttct aaacagtcta
    26461 taattcgagt tcttaattca gctggatcat ctttaaaaat aaaatccatc gctgcaactt
    26521 tgtagacaaa tgttaaatag gtaagttcac tgtgactcgt aacgaaaata atgttaccaa
    26581 ctgggtcatg cttacgaatt tcactgccta atttgatacc attaatatca gttgaaagtt
    26641 gaatatctaa aaagtaacag cctatgtcat tcatattttt agcttgctca agcacctcat
    26701 aaggattatc agttgcgagg gcaatttcca taggcttttc ttctatcatt atataatttt
    26761 taataatggt aaccatgttt tctctttgtt ttggatcgtc ttcgcaaatg aaaattttca
    26821 tacattcaca tccttatggc tagttgttaa taatttcaac tttttgaata aagaaaccat
    26881 tttcgataat tgtatctaat aagacattgt ctgcattatc agcaatttct tttaaagttg
    26941 atagacctaa accacgacct tcacctttag tagaaaaact ttcttggaac aattcatgaa
    27001 tgcgtggtat atcatcagcg catttattca taacaataaa cgttactgaa ttttcacttt
    27061 caataaatgc aacgcgaatg atagggtcat caatttcagt tgatgcctca attgcattat
    27121 caagaataat accaatactg cgacttaaat cgatcatatt caagttaatg ctacttactt
    27181 catcgggtat ttcgatacta atcggaaaat tcatttcttg tgcacgtaaa attttcgcag
    27241 taattaagcc tttaatttca cgtactttaa gattctcgat accatttaat tttatagcat
    27301 tcatttgtaa attgtctttc ataggtacaa tatttttatt gaaataatca cgtaggccag
    27361 gcatgtcatc ttctcgaatg tattctgaaa gtgtcgttaa gatattgaca taatcatgac
    27421 ggaacttgcg catttcgttg ttgatagctt caatcttcaa tgtatattca taataggttt
    27481 caatttcttc ttgattacgt ttatatttca tctctttaag gagaaattga gaaataacaa
    27541 atgttaatat acttaaaaat atagtgatac caataaaaat aaaagaatac tgccttatta
    27601 ctttagcttc atccgagttt atttgtgaat aaaagaaaaa taatgaaaaa gtaagcagta
    27661 agatagtcga aataactatt aaaaatcctt tgtttagtat tagatatggt gtgctaattt
    27721 ttttgagaac tctatttatt atatatgaga atagtatact aatagtcaca taaactacaa
    27781 aaaagctagg gaatattaca aatatactat cagaaatttt ggtgatatat gcatatataa
    27841 ctatatacat gtagttagca cagtatagaa taatctgcga agtcataatc aacaaaatag
    27901 aataccattt gattttgaca aaatacatta taataataaa tgaagttaat atgattaagg
    27961 acgcgctatc aaacatttta aatagaaata acgataatgt cgaaattact atgatgaaaa
    28021 aaataatcaa gtttactgta cttaatacca ctaattatag ctggtattgt aaacattaat
    28081 atcatttgag ttaatacgaa taaaacaaaa ttataactat ttaataattc cacctactat
    28141 cacactctct atttaaatta ttcgtgtaat tgtgttaatt cttttggtac ttcaacttca
    28201 tccattatga agtcacaagt actataagct gcgatgttac caatgttttt taaaatccca
    28261 gtaataaaat caaaaaataa gttaaataat gtattcattt taagtcctcc ttaataaaga
    28321 aaataggtaa taatgtaata gcttctatta tgatgcctaa ttgaatgaat tgggcaaatg
    28381 gctctttgat gataagtgtg ataatgaaaa gggttaaact aacaataatc gcataatatt
    28441 tttttcgttt aataagtcgc acaggaatgg gcttcttttt agttgctgca ggagcatata
    28501 ctgagattac acctaaagaa ataactgtta aaataatcat aattaaaaag ttaatatgaa
    28561 aatttactat tactaaaggt aaaagtataa atagtataat actttctaca taacaccaaa
    28621 aagaagaagg tgcatgtgca ccatgtgcat gtcttcttat taaataaaat gttaaattcg
    28681 taattaacgt aaacagaaaa atgtttaaaa tataggcaat agtatacata acaattaatt
    28741 tacctatatt tttagctaag acctgcatcc ctaatcgtac ttgcaaaaat tgaatatgat
    28801 ctaagttatt tctcttttga agatacgtgg caaactggtc aattttatta tcaaaataat
    28861 tcaattttac accactctcc tcactgtcat tatacgattt agtacaatct tttatcatta
    28921 tattgcctaa ctgtaggaaa taaatactta actgttaaat gtaatttgta tttaatattt
    28981 taacat
//
LOCUS       DAMQWL010000024        26678 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.024, whole genome shotgun sequence.
ACCESSION   DAMQWL010000024 DAMQWL010000000
VERSION     DAMQWL010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 26678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26678
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.024"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..143
                     /locus_tag="PF788_000938"
     CDS             <1..143
                     /locus_tag="PF788_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303211.1"
                     /translation="GTYYFHGHIVPGWQGVKKTFDTAEELETYIKQQGLEYEEQKQLT
                     LF"
     gene            152..523
                     /locus_tag="PF788_000939"
     CDS             152..523
                     /locus_tag="PF788_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDG6303212.1"
                     /translation="MKVNYETGFQIGVMEARLKKMRKQRDEYKKQRDELIGDIAKLRE
                     RNEELENMWRTLKNELFGRYEFYRFRLSELQIESRANKEVAIYRRAEINLSVILCRMD
                     KLDGTNEFYEFLGQMEDDTNE"
     gene            516..752
                     /locus_tag="PF788_000940"
     CDS             516..752
                     /locus_tag="PF788_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001065103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1024 family protein"
                     /protein_id="HDG6303213.1"
                     /translation="MNNREQIEQSVISASAYNGNDTEGLLKEIEDVYKKAQAFDEIRE
                     AINAQWVEYPEDWASEVLREVRELEYEEEQENEN"
     gene            742..984
                     /locus_tag="PF788_000941"
     CDS             742..984
                     /locus_tag="PF788_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000700108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303214.1"
                     /translation="MKINESLKKLKEKGYKENEDKAIFNLADGTLEIYIDHDEKTIIT
                     EFHDLKVFVSEDLKDKSMESVMYELAGIDEEDKEND"
     gene            977..1510
                     /locus_tag="PF788_000942"
     CDS             977..1510
                     /locus_tag="PF788_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP pyrophosphatase"
                     /protein_id="HDG6303215.1"
                     /translation="MTNILQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAV
                     IKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGYHGNLGINIKNDNETLESE
                     DMSNFGRSPAGIDGKYARLPVTDKILCMNGSYVINKGDKLAQLVIVPIWTPELKQVEE
                     FESVSERGAKGFGSSGV"
     gene            1547..1792
                     /locus_tag="PF788_000943"
     CDS             1547..1792
                     /locus_tag="PF788_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303216.1"
                     /translation="MSDMLEIFLIGFGVYLFYRIAIIFLKSKKTIHTNIYEMLMLATI
                     FMISTFAYKHQKTHILIAFLVMFFMSKLKQVQGSYEE"
     gene            1789..1995
                     /locus_tag="PF788_000944"
     CDS             1789..1995
                     /locus_tag="PF788_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1381 domain-containing protein"
                     /protein_id="HDG6303217.1"
                     /translation="MTQYLVTTFKDSTGRKHTHITKAKSNQRFTVVEAESKEEAKEKY
                     EKQVKRDAVIKVGQLFENIRECGK"
     gene            1992..2378
                     /locus_tag="PF788_000945"
     CDS             1992..2378
                     /locus_tag="PF788_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000592210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303218.1"
                     /translation="MIKKLKNMDGFDIFIVGILSLFGITALLLVVALPIYTVASYQNK
                     EVHQGTITDKYNKRQDKEDKFYIVLDDKQVIENSDLFFKGKFDSADIQARLKVGDKVK
                     VKTIGYRIHFLNLYPVLYEVKKVDKK"
     gene            2375..2524
                     /locus_tag="PF788_000946"
     CDS             2375..2524
                     /locus_tag="PF788_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDG6303219.1"
                     /translation="MIKQILRLLFLLAMYELGKYVTEQVYIMMTANDDVEAPSDYVFR
                     AEVSE"
     gene            2524..2724
                     /locus_tag="PF788_000947"
     CDS             2524..2724
                     /locus_tag="PF788_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1514 family protein"
                     /protein_id="HDG6303220.1"
                     /translation="MWITMTIVFAILLLVCISINSDRAREIQALRYMNDYLLDEVVKT
                     KGYNGLKEYRIELKRMNNDIKK"
     gene            2752..3168
                     /locus_tag="PF788_000948"
     CDS             2752..3168
                     /locus_tag="PF788_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000590121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDG6303221.1"
                     /translation="MIKIEKHDIKKLEEYIQHIDNYRRELKMREYELLESHEPDNAGA
                     GKSNLPGNPIERCAIKKFSDNRYNTLRNIVNGVDRLIDESDEDTLELLRFRYWDCPIG
                     CYEWEDIAHYFGTSKTSILRRRNALIDKLAKYIGYV"
     gene            3400..3699
                     /locus_tag="PF788_000949"
     CDS             3400..3699
                     /locus_tag="PF788_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000988331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDG6303222.1"
                     /translation="MMTKDERIRFYKSKEWQTTRKRVLERDNYECQQCKRDGKLTTYD
                     KSKRKSLDVDHILSLEHHPEFAHDLNNLETLCIKCHNKKEKRFIKKENKWKDEKW"
     gene            3829..4173
                     /locus_tag="PF788_000950"
     CDS             3829..4173
                     /locus_tag="PF788_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017804894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303223.1"
                     /translation="MEIIVDENLVLKEKERLQVLYKDIPSNKLKVVDGLIIQAARLRV
                     MLDYMWEDIKEKGDYDLFTQSEKAPPYERERPVAKLFNARDAAYQKIIKQLSDLLPEE
                     KEDTETPSDDYL"
     gene            4170..5831
                     /locus_tag="PF788_000951"
     CDS             4170..5831
                     /locus_tag="PF788_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016187779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDG6303224.1"
                     /translation="MISNKYVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYF
                     DEQKIEDCIKFIEKWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGL
                     ISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYE
                     VSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKK
                     NRRTFYISTDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWE
                     KANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWK
                     EILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDV
                     KLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIVRRAF
                     EDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNK
                     EYIKKDENRRKTDGFMAFVHALYRADDIVDKDMSKALDALMSIDF"
     gene            5847..7034
                     /locus_tag="PF788_000952"
     CDS             5847..7034
                     /locus_tag="PF788_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000025279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDG6303225.1"
                     /translation="MSILEKIFKTRKDITYMLDLDMIEDLSQQAYVKRLAIDSCIEFV
                     ARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVS
                     DSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYLKYNNNKVTHFVES
                     LFEDYGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLA
                     IAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEK
                     NTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLV
                     SSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDE
                     SGD"
     gene            7018..7755
                     /locus_tag="PF788_000953"
     CDS             7018..7755
                     /locus_tag="PF788_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001607394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HDG6303226.1"
                     /translation="MKAEIKGVIVSNEDKWVYEMLGMDSTCPKDVLTQLEFSDEDVDI
                     IINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIAMAGDHIEMSPVARMMI
                     HNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQELVEMMARETWLNADEA
                     IEQGFADSKMFENDNMQIVASNTQVLSKDVLNRVTALVSKTPEVNIDIDAIANKVIEK
                     INMKEKESEIDVADSKVSANGFSRFLF"
     gene            7779..8924
                     /locus_tag="PF788_000954"
     CDS             7779..8924
                     /locus_tag="PF788_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001573791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDG6303227.1"
                     /translation="MTINLSETFANAKNEFINAVNNGEPQERQNELYGDMINQLFEET
                     KLQAKAEAERVSSLPKSAQSLSANQRSFFMDINKNVNYKEEKLLPEETIDRIFEDLTT
                     NHPLLADLGIKNAGLRLKFLKSETSGVAVWGKIYGEIKGQLDAAFSEETAIQNKLTAF
                     VVLPKDLNDFGPAWIERFVRVQIEEAFAVALETAFLKGTGKDQPIGLNRQVQKGVSVT
                     EGAYPEKEEQGTLTFANPRATVNELTQVFKYHSTNEKGKSVAVKGNVTMVVNPSDAFE
                     VQAQYTHLNANGVYVTALPFNLNVIESTVQEAGKVLTYVKGLYDGYLAGGINVQKFKE
                     TLALDDMDLYTAKQFAYGKAKDNKVAAVWKLDLKGHKPALEGTEETL"
     gene            8944..9228
                     /locus_tag="PF788_000955"
     CDS             8944..9228
                     /locus_tag="PF788_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016170801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303228.1"
                     /translation="MVKFKVVRAFKDIEHNQHKYKVGELYPAEGYNNPRVELLTNQIK
                     NKYDKVYIVPLDKLTKQELLELCESLQKKASSSMVKSEIVDLLNGEDNDD"
     gene            9218..9502
                     /locus_tag="PF788_000956"
     CDS             9218..9502
                     /locus_tag="PF788_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009560502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail adapter protein"
                     /protein_id="HDG6303229.1"
                     /translation="MTIDDLLVKFKSLEKIDHNSEDEYLKQLLKMSYERIKNQCGVFE
                     LENLIGQELILIRARYAYQDLLEHFNDNYRPEIIDFSLSLMEVSEDEESV"
     gene            9486..9848
                     /locus_tag="PF788_000957"
     CDS             9486..9848
                     /locus_tag="PF788_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000755150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head-tail adaptor protein"
                     /protein_id="HDG6303230.1"
                     /translation="MKKVFKKPRITTKRLNTRVHFYKYTENNGPEAGEKEEKLLYSCW
                     ASIDGVWLRELEQAISNGTQNDIKLYIRDPQGDYLPSEEHYLEIESRYFKNRLNIKQV
                     SPDLDNKDFIMIRGGYSS"
     gene            9845..10249
                     /locus_tag="PF788_000958"
     CDS             9845..10249
                     /locus_tag="PF788_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000114224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDG6303231.1"
                     /translation="MSVKVIGDKALERELENRFGTQAMLKVQDRALIAGAKVIVEEVK
                     KQLKPSKDTGALINEVSFSKPEWINGKRTITVHWRGSKDRYKIVHLIENGHVQKGTGK
                     FIKPKAMGGVNRAIRQGQNKYFETLKRELKKL"
     gene            10246..10650
                     /locus_tag="PF788_000959"
     CDS             10246..10650
                     /locus_tag="PF788_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303232.1"
                     /translation="MIDILYKVHEVISQDRIIREHVNINNIKFNKYPNVKDTDVPFIV
                     IDDIDDPIPTTYTDGDERAYSYIVQIDVFVKFNEKYNARIIRNKISNRIQKLLWSELK
                     MGNVSNGKPEYIEEFKTYRSTRVYEGIFYEEE"
     gene            10654..11298
                     /locus_tag="PF788_000960"
     CDS             10654..11298
                     /locus_tag="PF788_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000268736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDG6303233.1"
                     /translation="MVVKQASAPKAYFNITGLGFAKLTKEGAKLEYSDITKTRGLQKI
                     GVETGGDLKTAYADGGPIESGNTDGEGKISLQMHAFPKEIRKIVFNEEYDEYGVYKET
                     QGKQNNYVAIWFRQERRDGTFRTVLLPKVMFTNPKIDGETAEKDWDFSSEEVEGEALF
                     PLIDNKKSVRKYIFDSANMTNHSGNGEKGEEAFLKKILGEEYTGNVTEDNGETL"
     gene            11325..11564
                     /locus_tag="PF788_000961"
     CDS             11325..11564
                     /locus_tag="PF788_000961"
                     /inference="COORDINATES: protein motif:HMM:NF014427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HDG6303234.1"
                     /translation="MKSVNIPDSFKTLKVGNTYDLNVVVEPSNQSKLLKYTTDQTNIV
                     SINSDGQVTAEAQGIATVKAYVGNMSDTITINVEA"
     gene            11614..11964
                     /locus_tag="PF788_000962"
     CDS             11614..11964
                     /locus_tag="PF788_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303235.1"
                     /translation="MAKLKRNIIQLVEDPKANEIKLQTYLTPHFISFEIVYEAMDLID
                     DIEDENSTMKPREIADRLMDMVVKIYDNQFAVKDLKERMHAPDGMNALREQVVFITQG
                     QQTEETRNFIQNMK"
     gene            12015..12152
                     /locus_tag="PF788_000963"
     CDS             12015..12152
                     /locus_tag="PF788_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001837493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303236.1"
                     /translation="MMDLIENGKDANEVLKMPFHYVLSIYQNKNNDISEEKAEALIDA
                     F"
     gene            12209..16738
                     /locus_tag="PF788_000964"
     CDS             12209..16738
                     /locus_tag="PF788_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001799555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDG6303237.1"
                     /translation="MGERIKGLSIGLDLDAANLNRSFAEIKRNFKTLNSDLKLTGNNF
                     KYTEKSTDSYKQRIKELDGTITGYKKNVDDLAKQYDKVSQEQGENSAGAQKLRQEYNK
                     QANELNYLERELQKTSAEFEEFKKAQVEAQRMAESGWGKTSKVFESMGPKLTKMGDGL
                     KSIGKGMMIGVTAPVLGIAAASGKAFAEVDKGLDTVTQATGATGSELKKLQNSFKDVY
                     GNFPADAETVGGVLGEVNTRLGFTGKELENATESFLKFSHITGSDGVQAVQLITRAMG
                     DAGIEASEYQSVLDMVAKAAQASGISVDTLADSITKYGAPMRAMGFEMKESIALFSQW
                     EKSGVNTEIAFSGLKKAISNWGKAGKNPREEFKKTLAEIEKTPDIASATSLAIEAFGA
                     KAGPDLADAIKGGRFSYQEFLKTIEDSQGTVNQTFKDSESGSERFKVAMNKLKLVGAD
                     VWASIESAFAPVMEELIKKLSVAVDWFSNLSDGSKRSIVIFGGIAAAIGPVVFGLGAF
                     ISTIGNAVTVLAPLLAGIAKADGLISFLSTKVPILGTVFTALTGPIGIVLGVLAGLAV
                     AFTIAYKKSETFRNFVNDAIESVKQTFSNFIQFIQPFIDSVKNVFKQAVSAIVDFAKD
                     IWSQINGFFNENGISIVQALQNICNFIKVIFEFILNFVIKPIMFAIWQVMQFIWPAVK
                     ALIVSTWENIKGVIQGTLNIILGLIKFFSSLFTGDWRGVWDAIIMILKGVVQLIWNLI
                     QLWFVGKILGVVRYFGGLLKGLITGIWDVIKSIFSKSLSAIWNATKSIFGFLFNSVKS
                     IFTNMKNWLSNTWSSIRTNTIGKAQSLFSGVKSKFTSLWNATKDIFSNLRNWMANIWN
                     SIKDNTVGIASRLWSKVRGIFTNMRDGLQSIISKIKSHIGGMVDAIKKGLNKLIEGLN
                     WVGGKLGMDKIPKLHTGTEHTHTTTRLVKNGKIARDTFATVGDKGRGNGPNGFRNEII
                     EFPNGKRVITPNTDTTAYLPKGSKVYNGTQTYSMLNGTLPRFSLGTMWKDIKSGASSA
                     FNWTKDQIGKGTKWLGDKVGDVLDFMENPGKLLNYILEAFGIDFNSLTKGMGIAGDIT
                     KAAWSKIKKSATDWIKENLEAMGGGDLVGGILDPDKINYHYGRTAAYTAATGRPFHEG
                     VDFPFVYQEVRTPMGGRLTRMPFMSGGYGNYVKITSGVIDMLFAHLKNFSKSPPSGTM
                     VKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYLRNAKKKGRLSIGGGGATSGS
                     GATYASRVIRQAQSILGGRYKGKWIHDQMMRVAKRESNYQSNAVNNWDINAQRGDPSR
                     GLFQIIGSTFRANAKRGYTNFNNPVHQGISAMQYIVRRYGWDGFKRAGDYAYATGGKV
                     FDGWYNLGEDGHPEWIIPTDPARRNDAMKMLHYAAAEVRGRKASKNKRPSQLSSVNGF
                     DDPSLLLKMIEQQQQQIALLLKIAQSNDVIADKDYQPIIDEYAFDKKVNASIEKRERQ
                     ESTKVKFRKGGIAIQ"
     gene            16735..18219
                     /locus_tag="PF788_000965"
     CDS             16735..18219
                     /locus_tag="PF788_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HDG6303238.1"
                     /translation="MIDTIKVNNKTIPWLYVERGFEIPSFNYVLKTENVDGRSGSIYK
                     GRRLESYSFDIPLVVRNDYLSHNGFKTHDDVLNELVKFFNYEEQVKLQFKSKDWYWNA
                     YFEGPIKLHKEFAIPVKFTIKVVLTDPYKYSVTGYKNTAISDQVSVVNSGTADTPLIV
                     EARAIKPSSYFMITKNDEDYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDI
                     PSNDLGGKVGGDFVISNLGEGYKATNFSDAKGWVGAGTKRGLPKAMTDFQITYKCIVE
                     QKGKGAGRTAQHIYDSDGKLLASIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNK
                     PIMYNLDRIVVYMRLRRVGNKFSIKTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRP
                     ASIIAIYSAKYNGYKWMEMNGLGSFNTEILPKPKGARDVIIQKGDLVKIDMQAKSVVI
                     NEEPMLSEKSFGSNYFNVDSGYSELIIQPENVFDTTVKWQDRYL"
     gene            18235..22020
                     /locus_tag="PF788_000966"
     CDS             18235..22020
                     /locus_tag="PF788_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303239.1"
                     /translation="MIHVLDFNDKIIDFLSTDDPSLVRAIHKRNVNDNSEMLELLISS
                     ERAEKFRERHRVIIRDSNKQWREFIINWVQDTMDGYTEIECIASYLADITTAKPYAPG
                     KFEKKTTSEALKDVLSDTGWEVSEQTEYDGLRTTSWTSYQTRYEVLKQLCTTYKMVLD
                     FYIELSSNTVKGRYVVLKKKNSLFKGKEIEYGKDLVGLTRKIDMSEIKTALIAVGPEN
                     DKGKRLELVVTDDEAQSQFNLPMRYIWGIYEPQSDDQNMNETRLSSLAKTELNKRKSA
                     VMSYEITSTDLEVTYPHEIISIGDTVRVKHRDFNPPLYVEAEVIAEEYNIISENSTYT
                     FGQPKEFKESELREEFNKRLNLIHQKLNDNISNINTIVKDVVDGELEYFERKIHKSDT
                     PPENPVNDTLWYDTSNPDVAVLRRYWNGRWIEATPNDVEKLGGITREKALFSELNNIF
                     INLSIQHASLLSEATELLNSEYLVDNDLKADLQASLDAVIDVYNQIKNNLESMTPETA
                     TIGRLVDTKTLFLEYRKKLQDVYTDVEDVKIAISDRFKLLQSQYTDEKYKEALEIIAT
                     KFGLTVNEDLQLVGEPNVVKSAIEAARESTKEQLRDYVKTSDYKTDKDGIVERLDTAE
                     AERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLSNNPEIKASIEQANQEAQEAL
                     KSYIDAQDNLKEKESQAYADGKISEEEQRAIQDAQAKLEEAKQNAELKARNAEKKANA
                     YTDNKVKESTDAQRRTLTRYGSQIIQNGKEIKLRTTKEEFNATNRTLSNILNEIVQNV
                     TDGTTIRYDDNGVAQALNVGPRGIRLNADKIDINGNREINLLIQNMRDKVDKTDIVNS
                     LNLSREGLDINVNRIGIKGGNNNRYVQIQNDSIELGGIVQRTWKGKRSTDDIFTRLKD
                     GHLRFRNNTAGGSLYMSHFGISTYIDGEGEDGGSSGTIQWWDKTYSDSGMNGITINSY
                     GGVVALTSDNNRVVLESYASSNIKSKQAPVYLYPNTDKVPGLNRFAFTLSNADNAYSS
                     DGYIMFGSDENYDYGAGIRFSKERNKGLVQIVNGRYATGGDTTIEAGYGKFNMLKRRD
                     GNRYIHIQSTDLLSVGSDDAGDRIASNSIYRRTYSAAANLHITSAGTIGRSTSARKYK
                     LSIENQYNDRDEQLEHSKAILNLPIRTWFDKAESEILARELREDRKLSEDTYKLDRYV
                     GLIAEEVENLGLKEFVTYDDKGEIEGIAYDRLWIHLIPVIKEQQLRIKKLEESKNAG"
     gene            22010..22162
                     /locus_tag="PF788_000967"
     CDS             22010..22162
                     /locus_tag="PF788_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303240.1"
                     /translation="MQDNKQGLQANPEYTIHYLSQEIMRLTQENAMLKAYIQENKENQ
                     QCAEEE"
     gene            22209..22496
                     /locus_tag="PF788_000968"
     CDS             22209..22496
                     /locus_tag="PF788_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303241.1"
                     /translation="MAKEIINNTERFILVQIDKEGTERVVYQDFTGSFTTSEMVNHAQ
                     DFKSEENAKKIAETLNLLYQLTNKKQRVKVVKEVVERSDLSPEVTVNTETV"
     gene            22554..22850
                     /locus_tag="PF788_000969"
     CDS             22554..22850
                     /locus_tag="PF788_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2951 domain-containing protein"
                     /protein_id="HDG6303242.1"
                     /translation="MGWFKKHEHEWRIRRLEENDKTMLSTLNEIKLGQKTQEQVNIKL
                     DKTLDAIQKEREIDEKNKKENDKNIRDMKMWVLGLVGTIFGSLIIALLRMLMGI"
     gene            23000..23176
                     /locus_tag="PF788_000970"
     CDS             23000..23176
                     /locus_tag="PF788_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
                     /protein_id="HDG6303243.1"
                     /translation="MDRWWLSEYKEVVPMVALLKSLERRRLMITISTMLQFGLFLIAL
                     IGLVIKLIELSNKK"
     gene            complement(23229..23336)
                     /locus_tag="PF788_000971"
     CDS             complement(23229..23336)
                     /locus_tag="PF788_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303244.1"
                     /translation="MIFILWCVNLYIEKGQHAQTCYPNEPVKKTVAILD"
     gene            23388..23642
                     /locus_tag="PF788_000972"
     CDS             23388..23642
                     /locus_tag="PF788_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HDG6303245.1"
                     /translation="MINWKIRMKQKSFWVAILSAIFLFAQNIAKAIGYDIQVYTEQLT
                     DGLNAILGFLVLTGVIQDPTTKGIGDSHQALEYEEPRRKY"
     gene            23654..24409
                     /locus_tag="PF788_000973"
     CDS             23654..24409
                     /locus_tag="PF788_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDG6303246.1"
                     /translation="MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIR
                     MWGNAKDAINNDFKNMATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQ
                     FLILEQNYDGNANTPAKLRWDNYYGCTHFIRPKYKSEGLMNKITNKVKPPAQKAVGKS
                     ASKITVGSKAPYNLKWSKGAYFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTL
                     IYVFEIIDGWCRIYWNNHNEWIWHERLIVKEVF"
     gene            24600..25091
                     /gene="sak"
                     /locus_tag="PF788_000974"
     CDS             24600..25091
                     /gene="sak"
                     /locus_tag="PF788_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylokinase"
                     /protein_id="HDG6303247.1"
                     /translation="MLKRGLLFLTVLLLLFSFSSITNEVSASSSFDKGKYKKGDDASY
                     FEPTGPYLMVNVTGVDGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKE
                     FRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVVPDLSEHIKNPGFNLITKVII
                     EKK"
     gene            25741..26076
                     /locus_tag="PF788_000975"
                     /pseudo
     CDS             25741..26076
                     /locus_tag="PF788_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500032.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
     gene            complement(26171..26620)
                     /locus_tag="PF788_000976"
     CDS             complement(26171..26620)
                     /locus_tag="PF788_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis-inhibiting protein CHIPS"
                     /protein_id="HDG6303248.1"
                     /translation="MKKKLATTVLALSFLTAGISTHHHSAKAFTFEPFPTNEEIESNK
                     KMLEKEKAYKESFKNSGLPTTLGKLDERLRNYLKKGTKNSAQFEKMVILTENKGYYTV
                     YLNTPLAEDRKNVELLGKMYKTYFFKKGESKSSYVINGPGKTNEYAY"
BASE COUNT         9868 a         3632 c         5486 g         7692 t
ORIGIN      
        1 acggcactta ttactttcat gggcatatcg taccaggttg gcaaggcgtg aaaaagacat
       61 ttgatacagc tgaagagctt gaaacatata taaagcaaca gggtttggaa tatgaggaac
      121 agaagcaact aactttattt tagaggaggt tatgaaagtg aactatgaaa caggattcca
      181 aataggcgta atggaagcta ggttgaagaa gatgagaaaa caacgtgatg agtacaagaa
      241 gcaacgtgac gagcttattg gggatatagc taagttaaga gagcgtaacg aagagctgga
      301 gaacatgtgg cgcacgctta aaaatgaatt gtttggaaga tacgaatttt accgttttag
      361 acttagcgaa ctacagattg agagcagagc gaacaaggaa gtagctatat atagaagagc
      421 tgaaatcaac ttaagtgtta tattgtgccg aatggacaaa ctagacggaa caaatgagtt
      481 ctacgaattt ttagggcaaa tggaggatga cacaaatgaa taaccgcgaa caaatcgaac
      541 aatcagttat cagtgctagc gcgtataacg gcaatgacac agagggattg ctaaaagaga
      601 ttgaagacgt gtataagaaa gcgcaagcgt ttgatgaaat tcgcgaagct attaatgcgc
      661 aatgggttga gtatccagaa gactgggcgt cagaggtttt gagagaagta agagagcttg
      721 aatatgagga ggaacaggaa aatgaaaatt aatgaatctt tgaagaaatt aaaagaaaaa
      781 ggatacaaag aaaatgaaga taaagctatt tttaatttag ctgatggtac gctagaaatt
      841 tacatcgacc atgacgaaaa aacaataatt acagaattcc atgatttaaa ggtattcgtg
      901 tcagaagatt taaaagataa aagtatggag agcgttatgt atgaattggc tggaattgat
      961 gaggaggaca aggaaaatga ctaacatcct acaagtaaag ctattatcag aaaacgctag
     1021 aatgccagaa cgaaatcata agacggatgc aggttatgac atattctcag ctgaaactgt
     1081 cgtacttgag ccacaagaaa aggcagtgat caaaacagat gtagctgtaa gcataccaga
     1141 gggctatgtc ggactattaa ctagccgtag tggtgtaagt agtaaaacgc atttagtgat
     1201 tgaaacaggc aagatagacg cgggatatca cggcaattta gggattaata tcaagaatga
     1261 taatgaaacg ttagagagtg aggatatgag taactttggt cggagtcctg ctgggataga
     1321 tggaaagtat gcccgactac ctgtaacaga taaaatttta tgtatgaatg gtagttatgt
     1381 cataaacaaa ggcgacaaac tagctcaatt ggttattgtg cctatatgga cacctgaact
     1441 aaagcaagtg gaggaattcg agagtgtttc agaacgtgga gcaaaaggct tcggaagtag
     1501 cggagtgtaa agacatatta gatcgagtca aggaggtttt ggggaagtga gcgacatgtt
     1561 agaaatattt ttaatagggt ttggcgttta tctcttttat cgcatagcaa ttatttttct
     1621 taagagtaaa aagactatac acacaaacat atatgaaatg ttaatgcttg ctactatctt
     1681 tatgatatct acatttgctt ataaacatca aaagacgcat atcttaatag catttttagt
     1741 aatgtttttt atgagtaagc tcaaacaagt tcaagggagc tatgaggaat gacacaatac
     1801 ttagtcacaa cattcaaaga ttcaacagga cgtaaacata cacacataac taaagctaag
     1861 agtaatcaaa ggtttacagt tgttgaggca gagagtaaag aagaagcgaa agagaagtac
     1921 gagaaacaag ttaaaaggga tgcagttatt aaagtgggtc agttgtttga aaatataagg
     1981 gagtgtggga aatgattaaa aaacttaaaa atatggatgg gttcgacatc tttattgttg
     2041 gaatactgtc attattcggt ataaccgcat tgctacttgt tgtcgcattg cctatctata
     2101 cagtggctag ttaccaaaac aaagaagtac atcaagggac aattacagat aaatataaca
     2161 aaagacaaga taaagaggac aaattctata ttgtattaga tgataaacaa gtcatcgaaa
     2221 actcagactt attcttcaaa ggaaagtttg atagcgcaga catacaagct aggttaaaag
     2281 taggtgataa agtaaaagtt aagacgattg gatatagaat acacttttta aatttatatc
     2341 cggtcttata cgaagtaaag aaggtagata aaaaatgatt aagcaaatac taagattatt
     2401 attcttacta gcgatgtatg agttaggtaa gtatgtaact gagcaagtat atattatgat
     2461 gacggctaat gatgatgtag aggcgccgag tgattacgtc tttcgagcgg aggtaagtga
     2521 gtgatgtgga ttactatgac tattgtattt gctatattgc tattagtttg tatcagtatt
     2581 aatagtgatc gtgcaaggga gatacaagcg ctcagatata tgaatgatta tctacttgat
     2641 gaagtagtta aaactaaagg atacaacggg ttaaaagaat acaggattga attaaagcga
     2701 atgaataacg atattaaaaa gtaatttata ttatcggagg tattacattg aatgataaag
     2761 attgagaaac acgatatcaa aaagcttgaa gaatacattc agcacatcga taactatcga
     2821 agagagttga agatgcgaga atatgaatta cttgaaagtc atgaaccaga taatgcggga
     2881 gctggcaaaa gtaatttgcc gggtaacccg attgaacgat gtgcaataaa gaagtttagt
     2941 gataacaggt acaatacatt aagaaatata gttaacggtg tagatagatt gatagatgaa
     3001 agtgatgagg atacgcttga gttattaagg tttagatatt gggattgtcc tattggttgt
     3061 tatgaatggg aagatatagc acattacttt ggtacaagta agacaagtat attacgtaga
     3121 aggaatgcac tgatcgataa gttagcaaag tatattggtt atgtgtagcg gacttttacc
     3181 ctatgtaagt ccgcattaaa acagtttatt atgttagtat cagattaata tttaaagtta
     3241 ttaaatgcta atacgacgca tgaacaagag gcgcatcact atgtgatgtg tctttttatt
     3301 tatgaggtat gaacatgttc aaactaatag taaatacatt actacacatc aagtatagat
     3361 gcgtcttgat actacttaag ttatataagg tgaaacatta tgatgactaa agacgaacgc
     3421 atacgattct ataagtctaa agaatggcaa acaacaagaa aaagagtgct agaaagagat
     3481 aattatgaat gtcaacaatg taagagagac ggcaagttaa cgacatatga caaaagcaag
     3541 cgtaagtcgt tggatgtaga tcatatatta tcgctagaac atcatccgga gtttgctcat
     3601 gacttaaaca atttagaaac actgtgtatt aaatgtcaca acaaaaaaga aaagagattt
     3661 ataaaaaaag aaaataaatg gaaagacgaa aaatggtaaa tacccccggg tcaaaaaaat
     3721 caaaagcgat caaaatactt ggggaacggg gaggggctcg acttcgcgat aattttaaaa
     3781 atccatgtat accccccctc ttataaccat tttaaggcag gtgatgaaat ggagattata
     3841 gttgatgaaa acttagtgct taaagaaaaa gaaaggctgc aagtattata taaagacata
     3901 cctagcaata aattaaaagt agttgatggt ttaattattc aagcagcaag gctacgtgta
     3961 atgcttgatt acatgtggga agacataaaa gaaaaaggtg actatgattt atttactcaa
     4021 tctgaaaagg cgccaccata tgaaagggaa agaccagtag ccaaactatt taatgctaga
     4081 gatgctgcat atcaaaaaat aatcaaacaa ttatcggatt tattgcccga agagaaagaa
     4141 gacacagaaa cgccatctga tgattaccta tgattagtaa taaatacgtt gatgaatata
     4201 taaatttgtg gaaacaagga aagataattt taaataaaga aagaattgat ctctttaatt
     4261 atctacaaaa acatatatat tcacgagatg atgtatattt tgatgaacag aaaatcgagg
     4321 attgtatcaa atttattgaa aaatggtatt ttccaacatt accatttcaa aggtttatca
     4381 tagctaatat atttcttata gataaaaata cagatgaagc tttctttaca gaatttgcta
     4441 ttttcatggg acgtggaggc gggaaaaacg gtctaataag tgctattagt gattttcttt
     4501 ctacgccctt acacggagtt aaagaatatc acatctccat tgttgctaat agtgaagatc
     4561 aagcaaaaac atcgtttgat gaaatcagaa ccgttttaat ggataacaaa cgaaataaga
     4621 cgggtaaaac gccaaaagct ccttatgaag ttagtaaagc aaaaataata aaccgtgcaa
     4681 ctaaatcggt tattcgatat aacacatcaa acacaaaaac caaagacggt ggacgtgagg
     4741 ggtgtgttat ttttgatgaa attcattatt tctttggtcc tgaaatggta aacgtcaaac
     4801 gtggtggatt aggtaaaaag aaaaatagaa gaacgtttta tataagtact gatggttttg
     4861 ttagagaggg ttatatcgat gcaatgaagc acaaaattgc aagtgtatta agtggcaagg
     4921 ttaaaaatag tagattgttt gctttttatt gtaagttaga cgatccaaaa gaagttgatg
     4981 acagacagac gtgggaaaag gcgaacccaa tgttacataa accgttatca gaatacgcta
     5041 aaacactgct aagtacgatt gaagaagaat ataacgattt accattcaac cgttcaaata
     5101 agcccgaatt catgactaag cgaatgaatt tgcctgaagt tgaccttgaa aaagtaatag
     5161 caccatggaa agaaatacta gcgactaata gagagatacc aaatttagat aatcaaatgt
     5221 gtattggtgg tttagacttt gcaaacattc gagattttgc aagtgtaggg ctattattcc
     5281 gaaaaaacga tgattacatt tggttaggac attcgtttgt aagacaaggg tttttggatg
     5341 atgtcaaatt agaacctcct attaaagaat gggaaaaaat gggattattg accattgtcg
     5401 atgatgatgt cattgaaatt gaatatatag ttgattggtt tttaaaggct agagaaaaat
     5461 atgggcttga aaaagtcata gctgataatt atagaactga tattgtaaga cgtgcgtttg
     5521 aggatgctgg cataaaactt gaagtactta gaaatccaaa agcaatacat ggattacttg
     5581 caccacgtat cgatacaatg tttgcgaaac ataacgtaat atatggagac aatcctttga
     5641 tgcgttggtt tactaataat gttgcagtaa aggttaaacc cgatggtaat aaagaatata
     5701 ttaaaaaaga tgaaaataga agaaaaaccg atgggttcat ggcttttgtt cacgcattat
     5761 atagagcaga cgatatagta gacaaagaca tgtctaaagc gcttgatgca ttaatgagta
     5821 tagatttcta atagaggagg tgagacatga gtattctaga aaagatattt aaaactagga
     5881 aagatataac atatatgctt gatttagata tgatagaaga tctatcacaa caagcgtatg
     5941 tgaaacgttt agcgattgat agttgtattg aatttgttgc gcgagctgtc gctcaaagtc
     6001 attttaaagt attggaaggt aatagaattc aaaagaatga tgtttactac aagttaaata
     6061 taaaaccaaa tactgactta tcaagcgata gtttttggca acaagttata tataaactaa
     6121 tttatgataa cgaggtttta atcgtagtaa gtgacagcaa agaattactt atcgcagata
     6181 gcttttacag agaagagtac gctttgtatg atgatatatt caaagatgta acggttaaag
     6241 attatactta tcaacgtact ttcacaatgc aagaggtcat atatttaaag tacaacaaca
     6301 ataaagtgac acactttgta gaaagtctat tcgaagatta cgggaaaata ttcggaagaa
     6361 tgataggtgc acaattaaaa aactatcaaa taagagggat tttgaaatct gcctctagcg
     6421 catatgacga aaagaatata gaaaaattac aagcgttcac aaataaatta ttcaatactt
     6481 ttaataaaaa tcaactagca atcgcgcctt tgatagaagg ttttgattat gaggaattat
     6541 ctaatggtgg taagaatagt aacatgcctt tttctgaatt gagtgagcta atgagagatg
     6601 caataaaaaa tgttgcgttg atgattggta tacctccagg tttgatttac ggagaaacag
     6661 ctgatttgga aaagaacacg cttgtatttg agaagttctg tttaacacct ttattaaaaa
     6721 agattcagaa cgaattaaac gcgaaactca taacacaaag catgtatttg aaagatacaa
     6781 gaatagaaat tgtcggtgtg aataaaaaag acccacttca atatgctgaa gcaattgaca
     6841 aacttgtaag ttctggttca tttacaagga atgaggtgcg gattatgtta ggtgaagaac
     6901 catcagacaa tcctgaatta gacgaatacc tgattactaa aaactacgaa aaagctaaca
     6961 gtggtgaaaa tgatgaaaaa gaaaaagatg aaaacacttt gaaaggtggt gatgaagatg
     7021 aaagcggaga ttaaaggcgt catcgtttcc aacgaagata aatgggttta cgaaatgctt
     7081 ggtatggatt cgacttgtcc taaagatgtt ttaacacaac tagaatttag tgatgaagat
     7141 gttgatatta taattaactc aaatggtggt aacctagtag ctggtagtga aatatataca
     7201 catttaagag ctcataaagg caaagtgaat gttcgcatca cagcaatagc agcaagtgcg
     7261 gcatcgctta tcgcaatggc tggtgaccac atcgaaatga gtccggttgc tagaatgatg
     7321 attcacaatc cttcaagtat tgcgcaagga gaagcgaaag atctaaatca tgctgcagaa
     7381 acattagaac atgttggtca aataatggct gaggcatatg cggttagagc tggtaaaaac
     7441 aaacaagaac ttgtagaaat gatggctagg gaaacgtggc taaatgctga tgaagccatt
     7501 gaacaaggtt ttgcggatag taaaatgttt gaaaacgaca atatgcaaat tgtagcaagc
     7561 aatacacaag tgttatcgaa agatgtatta aatcgtgtaa cagctttggt aagtaaaacg
     7621 ccagaggtta acattgatat tgacgcaata gcaaataaag taattgaaaa aataaatatg
     7681 aaagaaaagg aatcagaaat cgatgttgca gatagtaaag tatcagcaaa tggattttca
     7741 agattccttt tttaatacaa aaaataggag gtcataaaat gactataaat ttatcggaaa
     7801 cattcgcaaa tgcgaaaaac gaatttatta atgcagtaaa caacggtgaa ccgcaagaaa
     7861 gacaaaatga attgtacggt gacatgatta accaactatt tgaagaaact aaattacaag
     7921 caaaagcaga agctgaaaga gtttctagtt tacctaaatc agcacaatct ttgagtgcaa
     7981 accaaagaag tttcttcatg gatatcaata aaaacgttaa ctataaagaa gaaaaacttt
     8041 tgccagaaga aacaattgat agaatttttg aagatttgac gacgaatcat ccgttattag
     8101 ctgatttagg tattaaaaac gctggtttgc gtttgaagtt cttaaaatct gaaacttctg
     8161 gcgtagccgt ttggggtaaa atctatggtg aaattaaagg tcaattagat gctgcgttca
     8221 gtgaagaaac agcaattcaa aataaattga cagcgtttgt tgttttacca aaagatttaa
     8281 atgattttgg tcctgcgtgg attgaaagat ttgttcgtgt tcaaatcgaa gaagcatttg
     8341 cagtggcgct tgaaactgcg ttcttaaaag gtactggtaa agaccaacca atcggcttaa
     8401 accgtcaagt acaaaaaggt gtatcggtaa ctgagggtgc ttatccagag aaagaagaac
     8461 aaggtacgct tacatttgct aatccgcgcg ctacagttaa tgaattgacg caagtgttta
     8521 aataccactc aactaacgag aaaggtaaat cagtagcggt taaaggtaat gtaacaatgg
     8581 ttgttaatcc gtccgatgct tttgaggttc aagcacagta tacacattta aatgcaaatg
     8641 gcgtatatgt tactgcttta ccatttaatt tgaatgttat cgagtctaca gtccaagaag
     8701 caggtaaggt tttaacgtac gttaaaggtt tatatgatgg ttatttagct ggtggtatta
     8761 atgttcagaa atttaaagaa acacttgcgt tagatgatat ggatttatac actgcaaaac
     8821 aatttgctta cggcaaagcg aaagataata aagttgctgc tgtttggaaa ttagatttaa
     8881 aaggacataa gccagcttta gaaggtaccg aagaaacact ataaaatttt atgaggtgat
     8941 aaaatggtga aatttaaagt tgttagagct tttaaagaca tagagcacaa tcaacacaag
     9001 tacaaagtag gggagttgta tccagctgaa gggtataaca atcctcgtgt tgaattgttg
     9061 acaaatcaaa tcaaaaataa gtacgacaaa gtttatatcg tacctttaga taagctgaca
     9121 aaacaagaat tattagaact atgcgaatca ttacaaaaaa aagcgtctag ttcaatggtt
     9181 aaaagtgaaa tcgtcgactt attgaatggt gaagacaatg acgattgatg atttgcttgt
     9241 caaatttaaa tcacttgaaa agattgacca taattcagag gatgagtact taaagcagtt
     9301 gttaaaaatg tcgtacgagc gtataaaaaa tcagtgcgga gtttttgaat tagagaattt
     9361 aataggtcaa gaattgatac ttatacgcgc tagatatgct tatcaagatt tattagaaca
     9421 cttcaacgat aattacagac ctgaaataat agatttttcg ttatctctaa tggaggtatc
     9481 agaagatgaa gaaagtgttt aaaaaaccta gaattacaac taaacgttta aatactcgtg
     9541 ttcattttta taagtatact gaaaataatg gtccagaagc tggagaaaaa gaagaaaaat
     9601 tattatatag ctgttgggcg agtattgatg gtgtctggtt acgtgaatta gaacaagcta
     9661 tctcaaacgg aacccaaaat gacattaaat tgtatattcg tgatccgcaa ggtgattatt
     9721 tacccagtga agaacattat cttgaaattg aatcaagata tttcaaaaat cgtttgaata
     9781 taaagcaagt atcaccagat ttggataata aagactttat tatgattcgt ggaggatata
     9841 gttcatgagt gtgaaagtga taggtgataa agcattagaa agagaattag aaaatcgttt
     9901 cggaactcaa gcgatgttaa aagttcaaga tagggcgcta attgctggtg ctaaagtaat
     9961 tgttgaagaa gtaaaaaaac aactaaagcc atcaaaagat acgggcgcat taattaatga
    10021 ggtaagtttt agtaaacctg aatggataaa cggaaaacgt acaattactg ttcattggcg
    10081 aggttctaaa gaccgttata aaatcgtaca tttaattgaa aatggacacg ttcaaaaagg
    10141 gacaggtaaa tttatcaaac ctaaagctat gggtggcgtt aatagagcaa taagacaagg
    10201 gcaaaataag tattttgaga cgctaaaaag ggagttaaaa aaattgtgat tgatattttg
    10261 tacaaagttc atgaagtgat tagtcaagac agaattatta gagagcacgt aaatatcaat
    10321 aatattaagt tcaataaata cccaaacgta aaagatacgg atgtaccttt catagttatt
    10381 gacgatatag acgacccaat acctacaact tatactgacg gagatgagcg cgcatatagt
    10441 tacattgtac aaatagatgt atttgtgaag tttaacgaaa agtataacgc gagaatcata
    10501 agaaataaga tatctaatcg tattcaaaag ttattatggt ctgaactgaa aatgggaaat
    10561 gtatccaacg gaaaacctga atatatagaa gaatttaaaa catatagaag cactcgtgtc
    10621 tacgagggca ttttttacga ggaggaataa taaatggtag taaaacaagc aagtgcgccg
    10681 aaagcgtatt ttaacattac tggtttaggt ttcgctaaat taacaaaaga aggcgcaaag
    10741 ctagaatata gcgatattac aaaaactaga ggattacaaa aaatcggtgt tgaaactgga
    10801 ggagacttga aaacagcata tgctgatggt ggtccaatcg aatcagggaa cacagacgga
    10861 gaaggtaaaa tttcgttaca aatgcatgct ttccctaaag agattcgcaa aatagtattc
    10921 aatgaagagt atgatgaata cggtgtttat aaagaaactc aaggtaaaca aaacaactat
    10981 gtagcaattt ggttcagaca agagcgtcga gacggcacat ttagaacggt tttattacct
    11041 aaagtcatgt ttacaaatcc taaaatcgat ggcgaaacgg ctgagaaaga ttgggatttc
    11101 tcaagcgaag aggttgaagg tgaggcactt ttccctttaa ttgataataa aaagtcagta
    11161 cgtaaatata tctttgattc agcaaacatg acaaatcata gtggaaatgg tgaaaaaggc
    11221 gaagaggctt tcttaaagaa aattttaggc gaagaatata ctggaaacgt gacagaggat
    11281 aacggcgaaa ctttgtaacg caaccggctt catcggaaac tgagataaag tcggttaata
    11341 taccagatag ttttaaaaca ctaaaagttg gcaacacata tgatttaaat gttgtagtag
    11401 agccatctaa tcaaagtaag ttattgaaat acacaacaga tcaaacgaat attgtatcaa
    11461 tcaatagtga tggtcaagtc actgcggaag cacaaggtat tgccacggtt aaagcatatg
    11521 ttggtaatat gagtgacact ataacaataa atgtagaagc ataagagggg acaacccctc
    11581 tattttattt gaaaataagg agagtattat aaaatggcaa aattaaaacg taacattatt
    11641 caattagtag aagatccaaa agcaaatgaa attaaattac aaacgtactt aacaccacac
    11701 ttcatttcat ttgaaattgt atacgaagca atggatttaa tcgatgatat tgaggacgaa
    11761 aatagcacga tgaagccaag agaaatcgct gacagattga tggatatggt tgtaaaaatt
    11821 tacgataacc aattcgcagt taaagaccta aaagaacgta tgcatgcacc tgatggaatg
    11881 aatgcacttc gtgaacaagt ggttttcatt acgcaaggtc aacaaactga ggaaactaga
    11941 aattttatcc agaacatgaa ataaagcctg aagatttaac atataaagca atgttgaaaa
    12001 atatggatac tctcatgatg gacttaattg aaaatggtaa agacgctaac gaagttttaa
    12061 aaatgccatt tcattatgtg ctttccatat atcaaaataa aaacaatgac atttctgaag
    12121 aaaaagcaga ggctttaatt gatgcatttt aaccttaacc gtttggttag ggttattttt
    12181 ttgaactttt ttagaaagga ggtaaaaaat gggagaaaga ataaaaggtt tatctatagg
    12241 tttggattta gatgcagcaa atttaaatag atcatttgca gaaatcaaac gaaactttaa
    12301 aactttaaat tctgacttaa aattaacagg caacaacttc aaatataccg aaaaatcaac
    12361 tgatagttac aaacaaagga ttaaagaact tgatggaact atcacaggtt ataagaaaaa
    12421 cgttgatgat ttagctaagc aatatgacaa ggtatctcaa gaacagggcg aaaacagtgc
    12481 aggagctcaa aagttacgac aagaatataa caaacaagca aatgaactga attatttaga
    12541 aagagaatta caaaaaacat cagccgaatt tgaagagttc aaaaaagctc aagttgaagc
    12601 tcaaagaatg gcagaaagtg gctggggaaa aaccagtaaa gtttttgaaa gtatgggacc
    12661 taaattaaca aaaatgggtg atggtttaaa atccattggt aaaggcatga tgattggtgt
    12721 aactgcacct gttttaggta tcgcagcagc atcaggaaaa gcttttgcag aagttgataa
    12781 aggtttagat actgttactc aagcaacagg cgcaacaggc agtgaattaa aaaaattgca
    12841 gaactcattt aaagatgttt atggcaattt tccagcagat gctgaaactg ttggtggagt
    12901 tttaggagaa gttaatacaa gattaggttt tacaggtaaa gaacttgaaa atgccacaga
    12961 gtcattcttg aaattcagtc atataacagg ttctgacggt gtgcaagccg tacagttaat
    13021 tacccgtgca atgggcgatg caggtatcga agcaagtgaa tatcaaagtg ttttggatat
    13081 ggtagcaaaa gcggcgcaag ctagtgggat aagtgttgac acattagctg atagtattac
    13141 taaatacggc gctccaatga gagctatggg ctttgagatg aaagaatcaa ttgctttatt
    13201 ctctcaatgg gaaaagtcag gcgttaatac tgaaatagca ttcagtggtt tgaaaaaagc
    13261 tatatcaaat tggggtaaag ctggtaaaaa cccaagagaa gaatttaaga agacattagc
    13321 agaaattgaa aagacgccgg atatagctag cgcaactagt ttagcgattg aagcatttgg
    13381 tgcaaaggca ggtcctgatt tagcagacgc tattaaaggt ggtcgcttta gttatcaaga
    13441 atttttaaaa actattgaag attcccaagg cacagtaaac caaacattta aagattctga
    13501 aagtggctcc gaaagattta aagtagcaat gaataaatta aaattagtag gtgctgatgt
    13561 atgggcttct attgaaagtg cgtttgctcc agtcatggaa gaattaataa aaaagctatc
    13621 agtcgctgtc gattggtttt cgaatttaag tgatggttct aaaagatcaa ttgttatttt
    13681 cggtggtatt gctgctgcaa ttggtcctgt agtttttggg ttaggtgcat ttataagcac
    13741 aattggtaat gcagtaactg tattagcccc actattagct ggtattgcaa aggctgatgg
    13801 attaattagt tttttatcga ctaaagtacc tatattagga actgtcttca cagctttaac
    13861 tggtccaatt ggcattgtat taggtgtttt agctggccta gcagtcgcat ttacaattgc
    13921 ttataagaaa tctgaaacat ttagaaattt tgttaatgat gcaattgaaa gtgttaaaca
    13981 aacatttagt aattttattc aatttattca acctttcatt gattccgtta aaaacgtctt
    14041 taaacaagcg gtttcagcaa tcgttgattt cgctaaagat atttggagtc aaattaatgg
    14101 attctttaat gaaaacggaa tttctattgt tcaagcgctt caaaatatat gcaattttat
    14161 caaagttata tttgaattta tcttaaattt tgtaattaaa ccaataatgt ttgcaatctg
    14221 gcaagtgatg caatttattt ggccggcggt taaagccttg attgtcagta cttgggagaa
    14281 tataaaaggt gtgatacaag gaactttaaa tatcatacta ggtttaatta agttcttctc
    14341 aagtttattt actggagatt ggcgaggagt ttgggacgcg attattatga ttcttaaagg
    14401 agtcgttcaa ttaatatgga atttaattca attatggttt gtaggcaaaa tacttggcgt
    14461 tgttaggtac tttggcggat tgctaaaagg attaataaca ggtatttggg acgtaataaa
    14521 aagtatattc agtaaatctt tatcagcaat ttggaatgcg acaaaaagta tttttggatt
    14581 cttatttaat agtgtcaaat caattttcac gaatatgaaa aattggttat ctaacacatg
    14641 gagtagtatc cgtacgaata cgataggaaa agcacagtca ttatttagtg gtgtgaaatc
    14701 aaaattcact agtttgtgga atgcgacaaa agatattttt agtaatctaa gaaattggat
    14761 ggcaaatatt tggaattcca ttaaagataa tacggttgga attgcaagtc gtttatggag
    14821 taaagtgcgt ggaattttta caaatatgcg tgacggctta caaagtatta tcagcaaaat
    14881 taaaagtcat atcggcggta tggtagatgc tattaaaaaa ggacttaata aattaattga
    14941 aggtttaaac tgggtcggtg gtaagctggg aatggataaa atacctaagt tacacactgg
    15001 tacagaacac acacatacta ctacaagatt agttaagaac ggtaagattg cgcgggatac
    15061 gttcgctacg gttggggata aaggacgtgg aaatggtccg aatggtttca gaaatgaaat
    15121 aattgaattc cctaatggta aacgtgtaat cacacctaat acagatacta ccgcttattt
    15181 acctaaaggc tcaaaagtat acaacggtac acaaacttat tcaatgttaa acggaacgct
    15241 tccaagattt agcttaggta ctatgtggaa agatattaaa tccggtgcat catcggcatt
    15301 taactggaca aaagatcaaa taggtaaagg taccaaatgg cttggcgata aagttggcga
    15361 tgttttagat tttatggaaa atcctggcaa acttttaaat tatatacttg aagcttttgg
    15421 aattgatttc aattctttaa ctaaaggtat gggaattgca ggcgacataa caaaagctgc
    15481 atggtctaag attaagaaaa gtgctactga ttggataaaa gaaaatttag aagctatggg
    15541 cggtggcgat ttagtcggcg gaatattaga ccctgacaaa attaattatc attatggacg
    15601 taccgcagct tatactgctg caactggaag accatttcat gaaggtgtcg attttccatt
    15661 tgtatatcaa gaagttagaa cgccgatggg tggcagactt acaagaatgc catttatgtc
    15721 tggtggttat ggtaattatg taaaaattac tagtggagtt atcgatatgc tatttgcgca
    15781 tttgaaaaac tttagcaaat caccacctag tggcacgatg gtaaagcccg gcgatgttgt
    15841 tggtttaact ggtaataccg gatttagtac aggaccacac ttacattttg aaatgagaag
    15901 aaatggacgt cactttgacc ctgaaccata tttaagaaat gcaaagaaaa aaggtaggtt
    15961 atcaattggt ggcggtggtg ctacttctgg aagtggtgca acttatgcaa gccgagtaat
    16021 ccgtcaagcg caaagtattt taggaggacg ttataaaggt aagtggattc atgaccagat
    16081 gatgcgagtt gcaaagcgtg aaagtaacta tcaatcaaat gcagtgaata attgggatat
    16141 taatgctcaa agaggagacc catcaagagg attattccaa atcatcggct caacttttag
    16201 agcaaacgct aaacgtggat atactaactt taataatccg gttcatcaag gtatttcagc
    16261 aatgcagtac attgttagac gctacggttg ggatggattt aagcgtgctg gtgattacgc
    16321 atatgctaca ggtggaaaag tttttgatgg ttggtataac ttaggtgaag acggtcatcc
    16381 agaatggatt attccaacag atccagctcg tagaaatgat gcaatgaaga tgttgcatta
    16441 tgcagcagca gaagtaagag ggagaaaagc gagtaaaaat aagcgtccta gtcaattgtc
    16501 tagtgtaaat gggtttgatg acccaagctt attattgaaa atgattgaac aacagcaaca
    16561 acaaatagct ttattactga aaatagcgca atccaacgat gtgattgcag ataaagatta
    16621 tcagccgatt attgacgaat acgcttttga taaaaaggtg aacgcgtcta tagaaaagcg
    16681 agaaaggcaa gaatcaacaa aagtaaagtt tagaaaagga ggaattgcta ttcaatgata
    16741 gacactatta aagtgaacaa caaaacaatt ccttggttgt atgtcgaaag agggtttgaa
    16801 ataccctctt ttaattatgt tttaaaaact gaaaatgtag atggacgttc ggggtctata
    16861 tataaagggc gtaggcttga atcttatagt tttgatatac ctttggtggt acgtaatgac
    16921 tatttatctc acaacggctt taaaacacat gatgacgtct tgaatgaatt agtaaagttt
    16981 tttaactacg aggaacaagt taaattacaa ttcaaatcta aagattggta ctggaacgct
    17041 tattttgaag gaccaataaa gctgcacaaa gaatttgcaa tacctgttaa gttcactatc
    17101 aaagtagtac taacagaccc ttacaaatat tcagtaacag gatataaaaa tactgcgatt
    17161 tcagaccaag tttcagttgt aaatagtggg actgctgaca ctcctttaat tgttgaagcc
    17221 cgagcaatta aaccatctag ttactttatg atcactaaaa atgatgaaga ttattttatg
    17281 gttggtgatg atgaggtaac caaagaagtt aaggattaca tgcctcctgt ttatcatagt
    17341 gagtttcgtg atttcaaagg ttggactaag atgattactg aagatattcc aagtaatgat
    17401 ttaggtggta aagtcggcgg tgactttgtg atatccaatc ttggcgaagg atataaagca
    17461 actaattttt ctgatgcaaa aggttgggtt ggtgctggca cgaaacgagg gctccctaaa
    17521 gcgatgacag attttcaaat tacctataaa tgtattgttg aacaaaaagg taaaggtgcc
    17581 ggaagaacag cacaacatat ttatgatagt gatggtaagt tacttgcttc tattggttat
    17641 gaaaataaat atcatgatag aaaaatagga catattgttg ttacgttgta taaccaaaaa
    17701 ggagacccca aaaagatata cgactatcag aataaaccga taatgtataa cttggacaga
    17761 atcgttgttt atatgcggct cagaagagta ggtaataaat tttctattaa aacttggaaa
    17821 tttgatcaca ttaaagaccc agatagacgt aaacctattg atatggatga gaaagagtgg
    17881 atagatggcg gtaagtttta tcagcgtcca gcttctatca tagctatcta tagtgcgaag
    17941 tataatggtt ataagtggat ggagatgaat ggattaggtt cattcaatac ggagattcta
    18001 ccaaaaccga aaggcgcaag ggatgtcatt atacaaaaag gtgatttagt aaaaatagat
    18061 atgcaagcaa aaagtgttgt catcaatgag gaaccaatgt tgagcgagaa atcgtttgga
    18121 agtaattatt tcaatgttga ttctgggtac agtgaattaa tcatacaacc tgaaaacgtc
    18181 tttgatacga cggttaaatg gcaagataga tatttataga aaggagatga gagtgtgata
    18241 catgttttag attttaacga caagattata gatttccttt ctactgatga cccttcctta
    18301 gttagagcga ttcataaacg taatgttaat gacaattcag aaatgcttga actgctcata
    18361 tcatcagaaa gagctgaaaa gttccgtgaa cgacatcgtg ttattataag ggattcaaac
    18421 aaacaatggc gtgaatttat tattaactgg gttcaagata cgatggacgg ctacacagag
    18481 atagaatgta tagcgtctta tcttgctgat ataacaacag ctaaaccgta tgcaccaggc
    18541 aaatttgaga aaaagacaac ttcagaagca ttgaaagatg tgttgagcga tacaggttgg
    18601 gaagtttctg aacaaaccga atacgatggc ttacgtacta cgtcatggac ttcttatcaa
    18661 actagatatg aagttttaaa gcaattatgt acaacctata aaatggtatt ggatttttat
    18721 atagagctta gttctaatac cgtcaaaggt agatatgtgg tactcaaaaa gaaaaacagc
    18781 ttattcaaag gtaaagaaat tgagtatggt aaagatttgg ttgggttaac taggaagatt
    18841 gatatgtcag aaatcaaaac agcattaatt gctgtgggac ccgaaaatga caaaggaaag
    18901 cgtttagagc tagttgtgac agatgacgaa gcgcaaagtc aattcaacct acctatgcgc
    18961 tatatttggg ggatatatga accacaatca gatgatcaaa atatgaatga aacacgatta
    19021 agttctttag ccaaaacaga gttaaataaa cgtaagtcgg cagttatgtc atatgagatt
    19081 acttctactg atttggaagt tacgtatccg cacgagatta tatcaattgg cgatacagtc
    19141 agagtaaaac atagagattt taacccgcca ttgtatgtag aggcagaagt tattgctgaa
    19201 gaatataaca taatttcaga aaatagcaca tatacattcg gtcaacctaa agagttcaaa
    19261 gaatcagaat tacgagaaga gtttaacaag cgattaaacc taatacacca aaaattaaac
    19321 gacaatatta gcaatatcaa tactatagta aaagatgttg tagatggtga attagaatac
    19381 tttgaacgca aaattcataa aagtgataca ccgccagaaa atccagtcaa tgatacgctt
    19441 tggtatgata caagtaaccc tgatgttgct gtcttgcgta gatattggaa tggtcgatgg
    19501 attgaagcaa caccaaatga tgttgaaaaa ttaggtggta taacaagaga gaaagcgcta
    19561 ttcagtgaat taaacaatat ttttattaat ttatctatac aacacgctag tcttttgtca
    19621 gaagctacag aattactgaa tagcgagtac ttagtagata atgatttgaa agcggactta
    19681 caagcaagtt tagacgctgt gattgatgtt tataatcaaa ttaaaaataa tttagaatct
    19741 atgacacccg aaactgcaac gattggtcgg ttggtagata caaaaacttt atttcttgag
    19801 tatagaaaga aattacaaga tgtttataca gatgtagaag atgtcaaaat cgccatttca
    19861 gatagattta aattattaca gtcacaatac actgatgaaa aatataaaga agcgttggaa
    19921 ataatagcaa caaaatttgg tttaacggtg aatgaagatt tgcagttagt cggagaacct
    19981 aatgttgtta aatcagctat tgaagcagct agagaatcca caaaagaaca attacgtgac
    20041 tatgtaaaaa catcggacta taaaacagac aaagacggta ttgttgaacg tttagatact
    20101 gctgaagctg agagaacgac tttaaaaggt gaaatcaaag ataaagttac gttaaacgaa
    20161 tatcgaaacg gattggaaga acaaaaacaa tatactgatg accagttaag tgatttgtcc
    20221 aataatcctg agattaaagc aagtattgaa caagcaaatc aagaagcgca agaagcttta
    20281 aaatcataca ttgatgctca agataatctt aaagagaagg aatcgcaagc gtatgctgat
    20341 ggtaaaattt cggaagaaga gcaacgcgct atacaagatg ctcaagctaa acttgaagag
    20401 gcaaaacaaa acgcagaact aaaggctaga aacgctgaaa agaaagctaa tgcttataca
    20461 gacaacaagg tcaaagaaag cacagatgca cagaggagaa cactgactcg ctatggttct
    20521 caaattatac aaaatggtaa ggaaatcaaa ttaagaacta ctaaagaaga gtttaatgca
    20581 accaatcgta cactttcaaa tatattaaac gagattgtcc aaaacgttac agatggaaca
    20641 acaatcagat atgatgataa cggagtggct caagctttaa atgtggggcc acgtggtatt
    20701 agattaaatg ctgataaaat tgatattaac ggtaatagag aaataaacct tcttatccaa
    20761 aatatgcgag ataaagtaga taaaaccgat attgtcaaca gccttaattt atcaagagag
    20821 ggtcttgata tcaatgttaa tagaattgga attaaaggcg gtaacaataa cagatatgtt
    20881 caaatacaga atgattctat tgaactaggt ggtattgtgc aacgaacttg gaaaggcaaa
    20941 cgatcaaccg atgatatatt cacacgtctt aaagatggac atctaaggtt tagaaataat
    21001 accgcaggcg gttcacttta tatgtcacat tttggtattt caacatatat tgatggagaa
    21061 ggcgaagacg gaggttcatc cggtactatt caatggtggg ataaaactta cagtgatagc
    21121 ggtatgaatg gcataacaat caattcctat ggtggtgtcg ttgcactaac gtcagataat
    21181 aatcgggttg ttctggagtc ttacgcttca tcgaatatca aaagcaaaca ggcaccggtg
    21241 tatttatatc caaacacaga caaagtgcct ggattaaacc gatttgcatt cacgctgtct
    21301 aatgcagata atgcttattc gagtgacggt tatattatgt ttggttctga tgagaactat
    21361 gattacggtg cgggtatcag gttttctaaa gaaagaaata aaggtcttgt tcaaattgtt
    21421 aatggacgat atgcaacagg tggagataca acaatcgaag cagggtatgg caaatttaat
    21481 atgctgaaac gacgtgatgg taataggtat attcatatac agagtacaga cctactgtct
    21541 gtaggttcag atgatgcagg agataggata gcttctaact caatttatag acgtacttat
    21601 tcggccgcag ctaatttgca tattacttct gctggcacaa ttgggcgttc gacatcagcg
    21661 cgtaaataca agttatctat cgaaaatcaa tataacgata gagatgaaca actggaacat
    21721 tcaaaagcta ttcttaactt acctattaga acgtggtttg ataaagctga gtctgaaatt
    21781 ttagctagag agctgagaga agatagaaaa ttatcggaag acacctataa acttgataga
    21841 tacgtaggtt tgattgctga agaggtggag aatttaggat taaaagagtt tgtcacgtat
    21901 gatgacaaag gagaaattga aggtatagcg tatgatcgtc tatggattca tcttatccct
    21961 gttatcaaag aacaacaact aagaatcaag aaattggagg agtcaaagaa tgcaggataa
    22021 caaacaagga ttacaagcta atcctgaata tacaattcat tatttatcac aggaaattat
    22081 gaggttaaca caagaaaacg cgatgttaaa agcgtatata caagaaaata aagaaaatca
    22141 acaatgtgct gaggaagagt aatctttagc actattttta tacaaaaatt taaggaggtc
    22201 atttaattat ggcaaaagaa attatcaaca atacagaaag gtttatttta gtacaaatcg
    22261 acaaagaagg tacagaacgt gtagtatatc aagatttcac aggaagtttt acaacttctg
    22321 aaatggttaa ccatgctcaa gattttaaat ctgaagaaaa cgctaagaaa attgcggaga
    22381 cgttaaattt gttatatcaa ttaactaaca aaaaacaacg tgtgaaagta gttaaagaag
    22441 tagttgaaag atcagattta tctccagagg taacagttaa cactgaaaca gtatgaaaag
    22501 ctatgagtta gatactcata atctttattc ttttagaaag cgggtgtact gaattggggt
    22561 ggttcaaaaa acacgaacat gaatggcgca tcagaaggtt agaagagaat gataaaacaa
    22621 tgctcagcac actcaatgaa attaaattag gtcaaaaaac ccaagagcaa gttaacatta
    22681 aattagataa aaccttagat gctattcaaa aagaaagaga aatagatgaa aagaataaga
    22741 aagaaaatga taagaacata cgtgatatga aaatgtgggt gcttggttta gttgggacaa
    22801 tatttggatc gctaattata gcattattgc gtatgcttat gggcatataa gagaggtgaa
    22861 taaaatgttt aaactaatct ttggttatag tttctggaca tgtttttggt tcggtaaatg
    22921 taaataagtt ttagtcagtg cttcggtact gactttttat ttattgttgt aattatggta
    22981 atatgcagaa gtgagcaagt tggatagatg gtggctatct gagtataagg aggtggtgcc
    23041 tatggtggca ttactgaaat ctttagaaag gagacgccta atgattacaa ttagtaccat
    23101 gttgcagttt ggtttattcc ttattgcatt gataggtcta gtaatcaagc ttattgaatt
    23161 aagcaataaa aaataaccat cgctaacttt ggctggtttc gatggttaaa tggttattaa
    23221 tttaatcttt aatctaaaat agccaccgtc tttttaacgg gctcattagg gtaacatgtt
    23281 tgcgcatgtt gccctttttc tatatataaa ttaacacacc ataatataaa tatcaaatag
    23341 acggcttatt agtcgtcttt ttattttggg taaaaggaga taagaatatg attaattgga
    23401 aaattagaat gaaacaaaaa tcattttggg tagcgatatt gtcagctatc tttttatttg
    23461 ctcaaaacat cgcaaaagct attgggtatg atatccaagt ttatacagag caattaacag
    23521 acggtttaaa cgctatatta ggatttttag tattaactgg tgtgattcaa gacccgacta
    23581 ctaaaggtat aggtgatagc caccaagctt tagaatatga agaaccaaga agaaaatact
    23641 aggaggtaaa ataatgaaaa catacagtga agcaagagca aggttacgtt ggtatcaagg
    23701 tagatatatt gattttgacg gttggtatgg ttaccaatgt gcagatttag cagttgatta
    23761 catttattgg ttgttagaaa ttagaatgtg gggaaatgca aaagatgcaa tcaataacga
    23821 ttttaaaaac atggcaacag tatatgaaaa cacaccatcg tttgttccac aaataggtga
    23881 tgtggctgta tttaccaaag gaatatataa acaatacggt catattggtt tagtgtttaa
    23941 tggtggtaat acaaaccaat ttttaatttt ggaacagaac tatgacggta acgcaaatac
    24001 gcctgcaaag ttacgttggg ataattatta cggctgtact cactttatta gacctaagta
    24061 taaaagtgag ggcttaatga ataagatcac aaataaagtt aaaccacctg ctcaaaaagc
    24121 agtcggtaaa tctgcaagta aaataacagt tggaagtaaa gcgccttata accttaaatg
    24181 gtcaaaaggt gcttatttta atgcgaaaat cgacggctta ggtgctactt cagccactag
    24241 atacggtgat aatcgtacta actatagatt cgatgttgga caggctgtat acgcgcctgg
    24301 aacattaata tatgtgtttg aaattataga tggttggtgt cgcatttatt ggaacaatca
    24361 taatgagtgg atatggcatg agagattgat tgtgaaagaa gtgttttaat tcttaggtta
    24421 aaatgttaaa tatttgttaa ttatttttta atgtaatttt agtttctttt aatattttat
    24481 tgatttttaa tattttctca atataaaatg aagttgttga tatttatcat cttaaataag
    24541 ggtgttagct ataaaaagag ataaataaaa acaaatatat tatatttgga ggaagcgcca
    24601 tgctcaaaag aggtttatta tttttaactg ttttattgtt attattctca ttttcttcaa
    24661 ttactaatga ggtaagtgca tcaagttcat tcgacaaagg aaaatataaa aaaggcgatg
    24721 acgcgagtta ttttgaacca acaggcccgt atttgatggt aaatgtgact ggagttgatg
    24781 gtaaaggaaa tgaattgcta tcccctcatt atgtcgagtt tcctattaaa cctgggacta
    24841 cacttacaaa agaaaaaatt gaatactatg tcgaatgggc attagatgcg acagcatata
    24901 aagagtttag agtagttgaa ttagatccaa gcgcaaagat cgaagtcact tattatgata
    24961 agaataagaa aaaagaagaa acgaagtctt tccctataac agaaaaaggt tttgttgtcc
    25021 cagatttatc agagcatatt aaaaaccctg gattcaactt aattacaaag gttattatag
    25081 aaaagaaata aaacaaaata gttgtttatt atagaaagca atgtcttgat tgaatatgtg
    25141 tagtgaaaat tatctttcat caaattctca ttcatgcacg aatggttctt ccccacctaa
    25201 tcagatatta ggtgacttat ggggagaaat cagttaggat gaaaaagtgg ataatccttt
    25261 tttaggcagg tacttcggta cttgcctatt tttttatgtt ataatctttc tagacgtatt
    25321 caagggacgt ctttttagat tgtatgttat agctagcttt cgggctagtt ttttgttatg
    25381 atgtgttaca catgcatcaa ctatttacat ctatccttgt tcacccaagc atgtcactgg
    25441 gtgttttttc ttatgataga gagcatagtt ttcatactac tccctcgtag tatatatgac
    25501 tttagcattc ccgtataata gtttacgggg tgctttttat gttataatta actgtatata
    25561 gtaggagtga actatatagc ctgttaagtg gcctagtaac ctaacactta tcctgcaatt
    25621 gatatccttt ttgcccttca ctcgatacat atatctcaac aacatagaaa tattacagtc
    25681 gctacaccgc atcttaaatg gtgtggttat ttttattgga agtgtgtatc aggtatcagt
    25741 aatgttaaaa caccagctaa aaatgaaaag aattcaccag tgccagcagg ttatacactc
    25801 gataaaaaca atgtaccgta taaaaaagag actggttatt acacagttgc caatgttaaa
    25861 ggtaataacg tgagggatgg ctattcaact aattcaagaa ttacaggtgt attacccaat
    25921 aacgcaacta tcaaatatga cggcgcatat tgcattaatg gctatagatg gattacttat
    25981 attgctaata gtggacaacg tcgttatata gcgacaggag aggtagacaa ggcaggtaat
    26041 agaataagca gttttggtaa gtttagtgca gtttgataat tagatatata aaggtttggc
    26101 aagttatgaa atgtctgcca aacctttata taaaaaagaa atatctacct tttaatttat
    26161 gtaactacta ttagtatgca tattcattag tttttccagg accattaatt acataagatg
    26221 atttagactc tcctttttta aagaagtatg ttttatacat tttacctagt aactcaacat
    26281 tttttctatc ttcagcaagt ggtgtattca gatatactgt atagtaacct ttattttcag
    26341 ttaaaataac cattttttca aattgagcag aattttttgt gcctttcttt aaataatttc
    26401 tcaaacgttc atctaatttt cctagcgttg taggaagacc actattttta aatgattctt
    26461 tataagcttt ttctttctct aacattttct tatttgattc tatttcttca tttgtaggaa
    26521 acggttcaaa agtaaaagct ttcgctgaat gatggtgtgt actgattcct gccgttaaaa
    26581 aacttaatgc taaaactgtt gttgctaatt tctttttcat aatgatgtta attctcctta
    26641 aattctatat ttaaatttat agttagtttt gcgaaatt
//
LOCUS       DAMQWL010000025        26586 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.025, whole genome shotgun sequence.
ACCESSION   DAMQWL010000025 DAMQWL010000000
VERSION     DAMQWL010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 26586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26586
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.025"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(71..454)
                     /locus_tag="PF788_000977"
                     /pseudo
     CDS             complement(71..454)
                     /locus_tag="PF788_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001574632.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
     gene            complement(649..873)
                     /locus_tag="PF788_000978"
     CDS             complement(649..873)
                     /locus_tag="PF788_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499185.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2922 domain-containing protein"
                     /protein_id="HDG6303249.1"
                     /translation="MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLN
                     IIKSNSGTITKVHSAQIIDKTTTVLFEDKK"
     gene            complement(890..1093)
                     /locus_tag="PF788_000979"
     CDS             complement(890..1093)
                     /locus_tag="PF788_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001837138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1659 domain-containing protein"
                     /protein_id="HDG6303250.1"
                     /translation="MSKINHITIVLSFTKVDANGKQTEFKRRFANINPDASNDQIKTF
                     SKLIERLTGETYSNIELIKSLSI"
     gene            1252..1812
                     /locus_tag="PF788_000980"
     CDS             1252..1812
                     /locus_tag="PF788_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDG6303251.1"
                     /translation="MNKVEAIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSEL
                     LTITVSQVKRLIEKCTLSEMCKAHFHSLIKIRLPETLSKELLQYIEDRSLSNEDVLFQ
                     SLRTNQVLSRQQAYRIIHQASIEAGIDNVGLTTLRKTFAYHAYQKGIPIPVIQKYLGH
                     QSAIETLNFIGLENECEHSIYISLQL"
     gene            1831..4233
                     /gene="mnhA2"
                     /locus_tag="PF788_000981"
     CDS             1831..4233
                     /gene="mnhA2"
                     /locus_tag="PF788_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh2 subunit A"
                     /protein_id="HDG6303252.1"
                     /translation="MSLVYLLIAILVIMAMILLMSKRRALAKYAGYIALVAPVISSIY
                     FLIQIPSVAKLQYLSTSIPWIKTLDINLDLRLDGLSLMFSLIISLIGIAVFFYATQYL
                     SSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYIFWELTSVSSFLLISYWYNNGDSQ
                     FGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHGLFIPMIFMFLL
                     GAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLLRFTPLLGLSNMYVYI
                     VTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAQHQQDAIASI
                     YVFVLFGALFHLMNHAIFKCALFMGVGILDHEAGSRDIRILSGMRQLFPKMNLVMTIA
                     ALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMIAIVFVGVIASVFTFTYALYM
                     VKEVFWTKYDSKVFTKKNIHEPWLFSLPSLILMVLVPVIFFVPNIFGKGIIVLALRAV
                     SGGNHQIDQLAPHVSQWHGFNIPLLLTIIIILLGSVLAIKVDWKKVFTGKIRQISVSK
                     SYEMVYRHFEKFATKRFKRVMQDRLNQYIIMTLGIFMIIIGYGYIRIGLPKVHQLHVS
                     EFGALEIILAIVTVTIGISLIFIRQRLTMVILNGVIGFVVTLFFIAMKAPDLALTQLV
                     VETITTILFIVSFSRLPNVPRSNANKKREIIKISVSLLMALIVVSLIFITQQTDGLSS
                     ISDFYLKADKLTGGKNIVNAILGDFRALDTLFEGLVLIITGLGIYTLLNYQDRRGQDE
                     RE"
     gene            4220..4645
                     /gene="mnhB2"
                     /locus_tag="PF788_000982"
     CDS             4220..4645
                     /gene="mnhB2"
                     /locus_tag="PF788_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh2 subunit B"
                     /protein_id="HDG6303253.1"
                     /translation="MKENDVVLRTVTKLVVFILLTFGFYVFFAGHNNPGGGFIGGLIF
                     SSAFILMFLAFNVEEVLESLPIDFRILMIIGALVSSITAIIPMFFGKPFLSQYETTWI
                     LPILGQIHVSTITLFELGILFSVVGVIVTVMLSLSGGRS"
     gene            4642..4986
                     /gene="mnhC2"
                     /locus_tag="PF788_000983"
     CDS             4642..4986
                     /gene="mnhC2"
                     /locus_tag="PF788_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh2 subunit C"
                     /protein_id="HDG6303254.1"
                     /translation="MNLILLLVIGFLVFIGTYMILSINLIRIVIGISIYTHAGNLIIM
                     SMGTYGSSRSEPLITGGNQLFVDPLLQAIVLTAIVIGFGMTAFLLVLVYRTYKVTKED
                     EIEGLRGEDDAK"
     gene            4976..6472
                     /gene="mnhD2"
                     /locus_tag="PF788_000984"
     CDS             4976..6472
                     /gene="mnhD2"
                     /locus_tag="PF788_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh2 subunit D"
                     /protein_id="HDG6303255.1"
                     /translation="MLSNLLILPMLLPFLCALILVFLKNNDRISKYLYLGTMTITTII
                     SLMLLIYVQRHRPITLDFGGWSAPFGIQFLGDSLSLIMVTTASFVITLIMAYGFGRGE
                     HKANRYHLPSFILFLSVGVIGSFLTSDLFNLYVMFEIMLLASFVLITLGQSVEQLRAA
                     IIYVVLNIIGSWLFLLGIGLLYKTVGTLNFSHIAMRLNDMGDNRTVTMISLIFLVAFS
                     AKAALVLFMWLPKAYAVLNTELAALFAALMTKVGAYALIRFFTLLFDQHNDLIHPLLA
                     TMAAITMVIGAIGVIAYKDIKKIAAYQVIISIGFIILGLGTNTFAGINGAIFYLVNDI
                     VVKTLLFFIIGSLVYITGYRQYQYLNGLAKKEPLFGVAFIIMIFAIGGVPPFSGFPGK
                     VLIFQGALQNGNYIGLALMIITSLIAMYSLFRILFYMYFGDKDGEEVNFKKIPLYRKR
                     ILSILVVVVIAIGIAAPVVLNVTSDATELNTSDQLYQKLVNPHLKGED"
     gene            6473..6955
                     /gene="mnhE2"
                     /locus_tag="PF788_000985"
     CDS             6473..6955
                     /gene="mnhE2"
                     /locus_tag="PF788_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh2 subunit E"
                     /protein_id="HDG6303256.1"
                     /translation="MNQIVLNIIIAFLWVLFQDEDHFKFSTFFSGYLIGLIVIYILHR
                     FFSDDFYVRKIWVAIKFLGVYLYQLITSSISTINYILFKTKDMNPGLLSYETRLTSDW
                     SITFLTILIIITPGSTVIRISQDSKKFFIHSIDVSEKEKDSLLRSIKHYEDLILEVSR
                     "
     gene            6952..7254
                     /gene="mnhF2"
                     /locus_tag="PF788_000986"
     CDS             6952..7254
                     /gene="mnhF2"
                     /locus_tag="PF788_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh2 subunit F"
                     /protein_id="HDG6303257.1"
                     /translation="MIQTITHIMIISSLIIFGIALIICLFRLIKGPTTADRVVTFDTT
                     SAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIGGGHVFNGNNKRNL"
     gene            7229..7666
                     /gene="mnhG2"
                     /locus_tag="PF788_000987"
     CDS             7229..7666
                     /gene="mnhG2"
                     /locus_tag="PF788_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001566533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh2 subunit G"
                     /protein_id="HDG6303258.1"
                     /translation="MEITKEIFSLIAAVMLLLGSFIALISAIGIVKFQDVFLRSHAAT
                     KSSTLSVLLTLIGVLIYFIVNTGFFSVRLLLSLVFINLTSPVGMHLVARAAYRNGAYM
                     YRKNDAHTHASILLSSNEQNSTEALQLRAEKREEHRKKWYQND"
     gene            8006..10048
                     /locus_tag="PF788_000988"
     CDS             8006..10048
                     /locus_tag="PF788_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002465267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDG6303259.1"
                     /translation="MEIFETILIFIAVVILSSFVHTFIPKVPLAFIQIFLGMLLFITP
                     IPVQFNFDSELFMVTMIAPLLFVEGVNVSRVHLRKYIKPVMMMALGLVITTVIGVGLF
                     IHWIWPDLPIGAAFAIAAILCPTDAVAVQAITKGKVLPKGAMTILEGESLLNDAAGII
                     SFKIAVGVLVTGAFSLVDAVQLFLIASIGGAVVGLLIGMALVRFRLTLMRRGYENINM
                     FTIIQLLTPFVTYLIAELFHASGIIAAVVAGLVHGFERDRIMQVRTQLQMSYNHTWNI
                     LGYVLNGFVFSILGFLVPEVIIKIIKTEPHNLIFLIGITIVVALAVYLFRFVWVYVLY
                     PYFYLAISPFQKMMTKNDDDNPTTEKPPKRSLYALIMTLCGVHGTISLAIALTLPYFL
                     AGHHAFTYRNDLLFIASGMVIISLVVAQVLLPLLTKPAPKTVIGNMSFKVARIYILEQ
                     VIDYLNQKSTFETSFKYGNVIKEYHDKLAFLKTVEKDDENSKELERLQKIAFNVETKT
                     LESLVDEGQITNSVLENYMRYAERTQVYRQASLIRRMIVLLRGALLKRRVQTRVNSAS
                     SLSVTDNLMELNKINKLVHYNVVSRLSKETTKDNTLEVGMVCDGYLMRIENLTPSNFF
                     NSASEDTITKIKLNALREQRRILRELIDTDEVSEGTALKLREAINYDEMVIVDSMT"
     gene            complement(11208..12137)
                     /locus_tag="PF788_000989"
     CDS             complement(11208..12137)
                     /locus_tag="PF788_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDG6303260.1"
                     /translation="MKKLVPLLLALLLLVAACGTGGKQSSDKSNGKLKVVTTNSILYD
                     MAKNVGGDNVDIHSIVPVGQDPHEYEVKPKDIKKLTDADVILYNGLNLETGNGWFEKA
                     LEQAGKSLKDKKVIAVSKDVKPIYLNGEEGNKDKQDPHAWLSLDNGIKYVKTIQQTFI
                     DNDKKHKADYEKQGNKYIAQLEKLNNDSKDKFNDIPKEQRAMITSEGAFKYFSKQYGI
                     TPGYIWEINTEKQGTPEQMRQAIEFVKKHKLKHLLVETSVDKKAMESLSEETKKDIFG
                     EVYTDSIGKEGTKGDSYYKMMKSNIETVHGSMK"
     gene            complement(12134..12970)
                     /locus_tag="PF788_000990"
     CDS             complement(12134..12970)
                     /locus_tag="PF788_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDG6303261.1"
                     /translation="MLEFVEHLFTYQFLNRALITSIIVGIVCGTVGSLIVLRGLSLMG
                     DAMSHAVLPGVALSFLFGIPMFVGALITGMIASIFIGYITSSSKTKPDAAIGISFTAF
                     LASGIIIISLINTTTDLYHILFGNLLAITNSAFLTTIVIGSIVLILIIIFYRPLMIST
                     FDPTFSRMSGLNTTLLHYFVMLLLSLVTVASIQTVGIILVVALLITPASTAFLISKKL
                     YSMMIIASLISVISSIVGLYYSYIYNIPSGATIVLCTFVIYIITLFFTKFTNRKKRGS
                     LT"
     gene            complement(12964..13707)
                     /locus_tag="PF788_000991"
     CDS             complement(12964..13707)
                     /locus_tag="PF788_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDG6303262.1"
                     /translation="MLETKDLNLFLGNKHVLKNISLSIPVRGEIIGIMGPNGAGKSSL
                     IKSLIGEFNATGTKLLYNKPIQQQLQHITYIPQKAHIDLDFPISVEQVILSGCYKEIG
                     WFRRPNKSARDKLKQLLSDLELESLRHRQISELSGGQLQRVLVARALMSESEVYFLDE
                     PFVGIDFSSEKLIMTKIENLKQQGKLILIIHHDLSKAKQYFDRIILLNQTLRYFGDSE
                     EAMSVTRLNETFMSSTDCSDPSQRSNITC"
     gene            13829..14473
                     /locus_tag="PF788_000992"
     CDS             13829..14473
                     /locus_tag="PF788_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HDG6303263.1"
                     /translation="MLTEEKEDYLKAILTNNGDKNFVTNKILSQFLNIKPPSVSEMVG
                     RLEKAGYVETKPYKGVRLTEDGLTHTLDIIKRHRLLELFLIEILKYNWEEVHQEAEIL
                     EHRISDLFVERLDSLLNFPETCPHGGVIPRNNEYKEKYITTILNYEPGDIVTIKRVRD
                     KTDLLIYLSSKDISIGNEVEIVSKDEMNKVIIIKRNDNVIIVSYENAMNMFAEK"
     gene            complement(14553..15305)
                     /locus_tag="PF788_000993"
     CDS             complement(14553..15305)
                     /locus_tag="PF788_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HDG6303264.1"
                     /translation="MNYLSNFFNTTIQLNIYIIVIVAACYIAIHQYRHKPVLNYLDVI
                     LNYIPVLTHEFGHVLFNKLAGGRAKDLVIVTSPRERQQTLQQGFAITQSRHLAGQWLT
                     TIGGYFMPPIMLLIGLASSHYQIPSFFIFTYLLIFIYFLILTSRKGSPIVVITLISIM
                     LYFILKDENIVEIQLLVTMSYQYILGVLLGEVLQSSWTIAKLTFQRPSPQWDGSALKE
                     LSHVPIFIYSTIWIIFNLYAVNILLKYTHLIN"
     gene            15541..16305
                     /locus_tag="PF788_000994"
     CDS             15541..16305
                     /locus_tag="PF788_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WecB/TagA/CpsF family glycosyltransferase"
                     /protein_id="HDG6303265.1"
                     /translation="MTVEERSNTAKVDILGVDFDNTTMLQMVENIKTFFANQSTNNLF
                     IVTANPEIVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDE
                     CLKIAHVNHQKVFLLGATNEVVEAAQYALQQRYPNISFAHHHGYIDLEDETVVKRIKL
                     FKPDYIFVGMGFPKQEEWIMTHENQFESTVMMGVGGSLEVFAGAKKRAPYIFRKLNIE
                     WIYRALIDWKRIGRLKSIPIFMYKIAKAKRKIKKAK"
     gene            complement(16366..17160)
                     /gene="tagH"
                     /locus_tag="PF788_000995"
     CDS             complement(16366..17160)
                     /gene="tagH"
                     /locus_tag="PF788_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acids export ABC transporter
                     ATP-binding subunit TagH"
                     /protein_id="HDG6303266.1"
                     /translation="MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDIS
                     LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTG
                     IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITV
                     NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEG
                     GKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFRNKLDESRFVIK"
     gene            17507..18319
                     /gene="tagG"
                     /locus_tag="PF788_000996"
     CDS             17507..18319
                     /gene="tagG"
                     /locus_tag="PF788_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acids export ABC transporter permease
                     subunit TagG"
                     /protein_id="HDG6303267.1"
                     /translation="MSAIGTVFKEHVKNFYLIQRLAQFQVKIINHSNYLGVAWELINP
                     VMQIMVYWMVFGLGIRSNAPIHGVPFVYWLLVGISMWFFINQGILEGTKAITQKFNQV
                     SKMNFPLSIIPTYIVTSRFYGHLGLLLLVIIACMFTGIYPSIHIIQLLIYVPFCFFLT
                     ASVTLLTSTLGVLVRDTQMLMQAILRILFYFSPILWLPKNHGISGLIHEMMKYNPVYF
                     IAESYRAAILYHEWYFMDHWKLMLYNFGIVAIFFAIGAYLHMKYRDQFADFL"
     gene            18418..19521
                     /locus_tag="PF788_000997"
     CDS             18418..19521
                     /locus_tag="PF788_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HDG6303268.1"
                     /translation="MNVLIKKFYHLVVRILSKMITPQVIDKPHIVFMMTFPEDIKPII
                     KALNNSSYQKTVLTTPKQAPYLSELSDDVDVIEMTNRTLVKQIKALKSAQMIIIDNYY
                     LLLGGYNKTSNQHIVQTWHASGALKNFGLTDHQVDVSDKAMVQQYRKVYQATDFYLVG
                     CEQMSQCFKQSLGATEEQMLYFGLPRINKYYTADRATVKAELKDKYGITNKLVLYVPT
                     YREDKADNRAIDKAYFEKCLPGYTLINKLHPSIEDSDIDDVSSIDTSTLMLMSDIIIS
                     DYSSLPIEASLLDIPTIFYVYDEGTYDQVRGLNQFYKAIPDSYKVYTEEDLIMTIQEK
                     EHLLSPLFKDWHKYNTDKSLHQLTEYIDKMVTK"
     gene            19518..20579
                     /locus_tag="PF788_000998"
     CDS             19518..20579
                     /locus_tag="PF788_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDG6303269.1"
                     /translation="MRFTIIIPTCNNEATIRQLLISIESKEHYRILCIDGGSTDQTIP
                     MIERLQRELKHISLIQLQNASIATCINKGLMDIKMTDPHDSDAFMVIKPTSIVLPGKL
                     DRLTAAFKNNDNIDMVIGQRAYNYHGEWKLKSADEFIKDNRIVTLTEQPDLLSMMSFD
                     GKLFSAKFAELQCDETLANTYNHAILVKAMQKATDIHLVSQMIVGDNDIDTHATSNEE
                     DFNRYITEIMKIRQRVMEMLLLPEQRLLYSDMVDRILFNNSLKYYMNEHPAVTHTTIQ
                     LVKDYIMSMQHSDYVSQNMFDIINTVEFIGENWDREIYELWRQTLIQVGINRPTYKKF
                     LIQLKGRKFAHRTKSMLKR"
     gene            20642..21040
                     /gene="tagD"
                     /locus_tag="PF788_000999"
     CDS             20642..21040
                     /gene="tagD"
                     /locus_tag="PF788_000999"
                     /EC_number="2.7.7.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate cytidylyltransferase"
                     /protein_id="HDG6303270.1"
                     /translation="MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIK
                     HKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQKEDDVEKFDVDVFVMGHDWEGEFDFL
                     KDKCEVIYLKRTEGISTTKIKQELYGKDAK"
     gene            complement(21157..22452)
                     /gene="pbp4"
                     /locus_tag="PF788_001000"
     CDS             complement(21157..22452)
                     /gene="pbp4"
                     /locus_tag="PF788_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein PBP4"
                     /protein_id="HDG6303271.1"
                     /translation="MKNLISIIIILCLTLSIMTPYAQATNSDVTPVQAANQYGYAGLS
                     AAYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTM
                     TNKEYIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVD
                     LMNNKAKAIGMKNTHFVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKE
                     TPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKR
                     GKFRINQVIMGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYY
                     VENDLYDVLPSDFSKKDYKLVVEDGKVHADYPREFINKDYGPPTVEVHQPIIQKANTV
                     AKSMWEEHPLFTIIGGTCLVAGLALIVHMIINRLFRKRK"
     gene            22873..24600
                     /locus_tag="PF788_001001"
     CDS             22873..24600
                     /locus_tag="PF788_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303272.1"
                     /translation="MKRENPLFFLFKKLSWPVGLIVAAITISSLGSLSGLLVPLFTGR
                     IVDKFSVSHINWNLIALFGGIFVINALLSGLGLYLLSKIGEKIIYAIRSVLWEHIIQL
                     KMPFFDKNESGQLMSRLTDDTKVINEFISQKLPNLLPSIVTLVGSLIMLFILDWKMTL
                     LTFITIPIFVLIMIPLGRIMQKISTSTQSEIANFSGLLGRVLTEMRLVKISNTERLEL
                     DNAHKNLNEIYKLGLKQAKIAAVVQPISGIVMLLTIAIILGFGALEIATGAITAGTLI
                     AMIFYVIQLSMPLINLSTLVTDYKKAVGASSRIYEIMQEPIEPTEALEDSENVLIDDG
                     VLSFEHVDFKYDVKKILDDVSFQIPQGQVSAFVGPSGSGKSTIFNLIERMYEIESGDI
                     KYGLESVYDIPLSKWRRKIGYVMQSNSMMSGTIRDNILYGINRHVSDEELINYAKLAN
                     CHDFIMQFDEGYDTLVGERGLKLSGGQRQRIDIARSFVKNPDILLLDEATANLDSESE
                     LKIQEALETLMEGRTTIVIAHRLSTIKKAGQIIFLDKGQVTGKGTHSELMASHAKYKN
                     FVVSQKLTD"
     gene            24959..26188
                     /locus_tag="PF788_001002"
     CDS             24959..26188
                     /locus_tag="PF788_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDG6303273.1"
                     /translation="MFLLINIIGLIVFLGIAVLFSRDRKNIQWQSIGILVVLNLFLAW
                     FFIYFDWGQKAVRGAANGIAWVVQSAHAGTGFAFASLTNVKMMDMAVAALFPILLIVP
                     LFDILMYFNILPKIIGGIGWLLAKVTRQPKFESFFGIEMMFLGNTEALAVSSEQLKRM
                     NEMRVLTIAMMSMSSVSGAIVGAYVQMVPGELVLTAIPLNIVNAIIVSCLLNPVSVEE
                     KEDIIYSLKNNEVERQPFFSFLGDSVLAAGKLVLIIIAFVISFVALADLFDRFINLIT
                     GLIAGWIGIKGSFGLNQILGVFMYPFALLLGLPYDEAWLVAQQMAKKIVTNEFVVMGE
                     ISKDIASYTPHHRAVITTFLISFANFSTIGMIIGTLKGIVDKKTSDFVSKYVPMMLLS
                     GILVSLLTAAFVGLFAW"
     gene            26443..26535
                     /locus_tag="PF788_001003"
     CDS             26443..26535
                     /locus_tag="PF788_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303274.1"
                     /translation="MFCYYKQHKGDNFSIEEVKNIIADNEMKVN"
BASE COUNT         8934 a         3823 c         4603 g         9226 t
ORIGIN      
        1 ggtgtaaact cagtcataat tatcaattcc tttcataaga attaactgtt aactaaagtt
       61 tacaccacca attaaaatca tgaattgtag cgccaaataa tccaaatgta tcaataatga
      121 cacccataat aatttgaccc gcaactgttg caattacagt taatgttgca cctaattttg
      181 gcaataacaa taaattgcca gttaaaaagc taaccccaag caaaccaccg actacccatg
      241 tgtagttaaa tgattgatta ttgtaaaagt gaatagtaaa tacttctgga ttgataatga
      301 tatttaaaat aattaaacaa attgttccaa ctgaaaatga aatgaatgaa gtatagaaag
      361 gcgatttagt atacagtgat agtcttgaat tgacagatgt ttggatagga ataagcattc
      421 caactaggac accaatgata tagaaaagaa gcatatgaat aaagtctcac tttccaaagt
      481 taataataaa atcatatatt tacattatca ttatagagaa aatatacaac tcatttacaa
      541 taatgttgaa aaaaacagga cattattaca acaaaatcac cctagacaat catgatgaaa
      601 gtctagggtg ttagtattta tactaaatta attgcgcttt ctttatatct atttcttatc
      661 ttcaaataaa acagttgttg ttttatcaat aatttgagca gaatgtactt tggtgatagt
      721 accactattt gactttataa tatttaaatc tactaatgca ttcatactat cacgtgcaac
      781 ttgctcggtc actacgttgt ttaattgtgg taattgcagt tttacaggct tgtctagtga
      841 agatttaaaa cttaattcaa gtgttttagt catgaatatg tcctcctgat taaattgata
      901 aagatttgat gagttcgata ttgctatatg tttctccagt aagtcgctca ataagtttgc
      961 tgaatgtttt aatttggtcg tttgatgcat cagggttaat gttagcgaat cgacgcttaa
     1021 attctgtttg tttgccgtta gcgtctactt tagtaaatga taatacaata gtgatgtggt
     1081 ttattttact catattttaa aacctccttt cacactatat atcgaaacaa aataataaaa
     1141 tggctaattt tattttctat gtttaaaatc tataaaaaag gcaatagata tatgtaacta
     1201 aaatataata tagctatgat taagacactt aaagcaaggg gaggttgagt aatgaataaa
     1261 gtagaagcga ttaaatttaa tgatgatatt gttaaaatgt atgaagcgct caagataaaa
     1321 tctgaacgtg actatttatt ctttaagtta gctatacata gtggattgaa agtatcagaa
     1381 ttattaacaa ttacagtctc tcaagttaag agactaattg aaaagtgtac gttatcagaa
     1441 atgtgtaaag cacattttca ttcgttgatt aaaattaggt taccagaaac attatcgaaa
     1501 gaactacttc aatatataga ggacaggagt ctttcgaatg aagacgttct ttttcaatca
     1561 ctacgaacaa atcaagtatt atctagacag caagcatatc gaataattca ccaagcatca
     1621 attgaagctg gtatagataa tgtaggacta acgacattgc gtaagacatt tgcatatcat
     1681 gcttatcaaa aaggtatacc tataccagtc attcaaaagt atttagggca tcaatctgct
     1741 attgaaacac taaattttat cggtttagaa aatgagtgtg aacatagtat ttatatttca
     1801 ttacaattat agaaacaaag gaggctaata atgagtttgg tttatttatt aattgctata
     1861 cttgtgatta tggcgatgat acttctaatg tctaaacgta gagcattggc taaatatgcc
     1921 gggtacatag cgttggttgc acctgtaatt tcatctatct attttttgat tcaaatacca
     1981 tcagtagcta aactgcaata tctttctacc tctattccat ggattaagac attagatatt
     2041 aatttagatt tacgtttaga tggtttaagt ttaatgtttt ctcttattat ttcacttatt
     2101 ggaattgcag tattcttcta tgcaactcaa tatttatcct ctcgaaaaga caatttacca
     2161 aggttttatt tttatttaac gttatttatg ttcagtatga ttggtattgt attatcagac
     2221 aatacgatat tgatgtacat tttttgggaa ttaacgagtg tatcatcatt tttattgatt
     2281 tcatattggt ataacaatgg tgacagtcaa tttggtgcga ttcaatcatt tatgattaca
     2341 gtatttggtg gattggcgtt attagttggt tttattatgc tgtatatcat gacaggaacg
     2401 aataacatca cagagatatt aggacaagca gatcatatta agaatcatgg attgtttatc
     2461 cctatgattt ttatgttttt attaggtgca tttacaaaat cagcacaatt tccatttcat
     2521 atttggctac ctagagcaat ggctgcacct acacctgtaa gtgcttattt acattcagcc
     2581 acgatggtaa aagctggtat ctttttatta cttcgattta caccattatt aggtcttagc
     2641 aatatgtacg tatatatcgt tacgtttgtt ggtttaataa caatgttatt tggttcaatt
     2701 acagctttaa aacaatggga tttaaaaggt atcctagcgt actctacaat cagtcaactt
     2761 gggatgatta tggctatggt gggtataggt ggcggatatg ctcaacacca acaagacgca
     2821 atagcatcta tttatgtatt tgtattattt ggtgcgctat ttcatctaat gaatcatgcc
     2881 atctttaaat gtgcgctttt catgggagta ggtattttag atcatgaagc aggttcaagg
     2941 gatatacgaa ttttaagtgg aatgcgtcaa ctatttccta aaatgaatct agtcatgacg
     3001 atagcggctc tatctatggc tggagtacca tttttaaatg gatttttaag taaagaaatg
     3061 tttttagatg cattaacaca aactggacaa ttatcccaat ttagtttgat ttcaatgata
     3121 gctatcgtgt ttgttggtgt tattgcgagt gtttttacat tcacatatgc actatacatg
     3181 gtaaaagaag tattttggac aaaatatgat tctaaggttt ttactaaaaa aaatatccac
     3241 gaaccatggt tgtttagttt accatctctt atattaatgg tgctagtacc tgtaatcttt
     3301 tttgtaccaa atatatttgg gaaggggatt atcgttctag cattaagagc tgtatcaggt
     3361 ggtaatcatc aaattgatca attggcacca catgtttcgc aatggcatgg atttaacata
     3421 ccgcttcttt taaccatcat cattatttta ttgggtagtg tactagcaat caaagtagat
     3481 tggaaaaaag tgttcacagg taaaattaga cagatttcag tttcaaaaag ctatgagatg
     3541 gtatatcgac attttgaaaa gtttgctacg aagcgattta aacgtgttat gcaagatcgt
     3601 ttaaaccaat acattattat gaccttaggc atatttatga ttatcattgg atatggttat
     3661 attcgaattg gacttcctaa agtacatcag ttacatgttt ctgaatttgg ggcattagaa
     3721 attatattag caatcgtaac tgtcacaatt ggtatttctt taatttttat acgtcaacga
     3781 ctgacaatgg tcattttaaa tggagtcatc ggatttgttg tgaccttatt ctttatagca
     3841 atgaaagccc ctgatctagc attgactcag ctagtagttg aaacaataac gacgatacta
     3901 tttattgtca gtttttcaag attaccaaac gtgccaagat ctaacgctaa caaaaaaaga
     3961 gaaataatta aaatttctgt atcactcttg atggcactta ttgttgtatc attaattttt
     4021 attacacaac aaacagatgg tttatcatca atatcagact tttatttaaa agctgacaaa
     4081 ctaacaggtg gtaaaaatat tgtaaatgcg atacttggtg actttagagc attagataca
     4141 ttatttgaag gattagtgtt aattattact gggctaggta tttacacatt attaaattat
     4201 caagatcgga ggggacaaga tgaaagagaa tgatgtcgtg ttaagaacgg tcacgaaact
     4261 tgttgtattt attttattga ctttcggatt ctatgtcttc ttcgcaggtc ataataatcc
     4321 tggtggtggg tttattggtg gtttaatatt tagttcagcg tttattttaa tgtttctggc
     4381 ttttaatgtt gaagaggttt tagaaagttt accgattgat tttagaattt taatgattat
     4441 tggagcattg gtatcatcta ttactgcgat aatacctatg ttttttggaa aaccattttt
     4501 gtctcaatat gaaacaactt ggatacttcc aattttagga caaattcatg taagtacaat
     4561 aacacttttt gaattaggta ttttattctc agttgttggt gttattgtca cagtgatgtt
     4621 gtcgcttagc ggaggtcgat catgaattta atattattac tagttatagg atttttagtg
     4681 tttataggaa catatatgat tttatcaatc aatttaattc gtattgtaat cggaatttca
     4741 atatatactc atgctggtaa tctcattatt atgagtatgg gaacgtatgg ttctagtaga
     4801 tcagaaccac taataactgg tggaaaccaa ttgtttgttg atcccttgtt acaagctatt
     4861 gtactaactg caatagttat agggtttggg atgactgcgt ttttacttgt acttgtttat
     4921 agaacttata aagtaacaaa agaagatgaa attgaaggcc taagggggga agatgatgct
     4981 aagtaactta ttgattttac caatgttatt accattcctt tgtgccttaa tccttgtatt
     5041 tttaaaaaat aatgatcgta tttctaaata tttatactta ggtacaatga ctatcaccac
     5101 aattatttca ttaatgctat taatttatgt tcagcgtcac cgtccaatta cgctagactt
     5161 tggaggatgg tcagcgccct ttggtataca gtttttagga gattctttaa gtttaattat
     5221 ggttacaacc gcttcgtttg tgattacttt aattatggca tacggatttg ggcgtggcga
     5281 acataaagca aatcgttatc acttgccatc gttcatatta tttttaagtg ttggcgtgat
     5341 aggctctttt ctaacatcag atttatttaa tttatacgtc atgtttgaaa ttatgttact
     5401 agcgtcattt gtactcatta cacttggaca atctgtagaa caattacgtg ctgcaattat
     5461 ttatgttgtc ttgaatatta ttggttcatg gctattctta ttaggtatag gtttacttta
     5521 taaaacagta ggtacattaa acttttcaca tattgcaatg cgtttgaatg acatgggaga
     5581 taatcgcact gttacaatga tttcattaat cttcttagtc gcatttagtg cgaaagcagc
     5641 gctggtcctt tttatgtggc tacccaaagc ctacgctgtg ttaaatactg agcttgcagc
     5701 attatttgca gcgttaatga ccaaagtagg ggcctatgca ttaattcgat tcttcacttt
     5761 actatttgat caacataatg atctcataca tccattgcta gcaactatgg ctgctataac
     5821 tatggtcatc ggcgctatag gtgtcattgc ttataaagat attaaaaaga ttgcagctta
     5881 ccaagtcata atctcaatag gatttatcat tttaggttta ggaacaaaca cgtttgcagg
     5941 tattaatggt gcaatatttt atttggtaaa tgacattgtt gtaaaaacat tgctattttt
     6001 tattattggt agtttagttt acattacagg ctatcgacaa tatcaatatt tgaatggctt
     6061 agctaaaaaa gaacctttat ttggagttgc gtttattata atgatttttg ctattggcgg
     6121 cgtgcctcca tttagtggct ttccggggaa agtacttatt ttccaaggtg cattgcaaaa
     6181 tggcaattat attggactag cgttaatgat tattactagt ctaattgcaa tgtacagttt
     6241 atttaggata cttttttata tgtattttgg agataaagat ggggaggaag ttaattttaa
     6301 gaaaatcccg ctatatcgaa aaagaatttt aagtatttta gtagttgtgg ttatcgcaat
     6361 cggaattgct gcacctgttg tgttaaatgt tacaagtgat gcaactgagt tgaacacgag
     6421 tgatcaatta tatcaaaaac ttgtaaatcc gcatttgaaa ggagaggact aaatgaatca
     6481 aatagtttta aatattatca ttgcattctt atgggtatta tttcaagatg aagatcattt
     6541 taaattctcg actttctttt ctggatatct aattggttta attgtcattt atatattaca
     6601 caggtttttc agcgatgatt tttatgttag aaaaatatgg gtagctatta aatttttagg
     6661 tgtttattta tatcaattaa taacatctag cattagcacg attaattata ttctttttaa
     6721 aacaaaagat atgaaccctg gattactttc atatgaaaca agactaacaa gtgattggtc
     6781 aataacattt ttaacaattt taattattat aactccaggg tctacagtaa tacgaatttc
     6841 tcaagactct aaaaagtttt ttattcatag tatcgacgtg tcagaaaaag aaaaagatag
     6901 tttgttaaga agtattaagc attatgaaga cttaatattg gaggtgtcgc gatgatacaa
     6961 acaataacac atattatgat tattagttca ctcattattt ttggaattgc attaatcatc
     7021 tgtttattta gattaatcaa gggacctaca acagcagatc gtgtcgttac atttgataca
     7081 acaagtgctg tcgtaatgtc aattgtgggt gtgttaagtg tacttatggg caccgtttct
     7141 ttcttagatt caatcatgct cattgccatt atatcttttg taagttctgt ttcaatatca
     7201 cgctttattg gtggggggca tgtgtttaat ggaaataaca aaagaaatct ttagtcttat
     7261 tgctgctgtg atgttgttgt taggtagttt tattgctctt attagtgcaa taggtatcgt
     7321 gaaattccaa gatgttttct taagaagtca cgctgcgaca aaaagttcaa ctttatccgt
     7381 gttattaact ttaatcggtg tattaattta ttttattgtg aatacaggat ttttcagtgt
     7441 gcgtttatta ctgtcacttg tttttattaa tttaacttca ccagtcggca tgcacttagt
     7501 cgctcgcgct gcttatcgca acggcgctta tatgtatcga aaaaatgatg ctcacacaca
     7561 tgcatcaata ttattaagtt caaatgaaca aaactctaca gaagcattac aattacgtgc
     7621 tgaaaaacga gaagagcatc gtaagaaatg gtatcaaaac gattgaagtg ttggctaaat
     7681 tgttaagcat aacaatgctt ttgaaaatct gttttcaaaa ttaatcatta aaagagtact
     7741 ttgaaattgg ttagtcgatt ttaaggtgct cattttttgt attataagtt aatgttgtta
     7801 tgtgaaagca agttgtttat ttatacaaac aattagtgat aaaataaaat taaataattg
     7861 caaatttaag tactgcaatc gtagacatat atctatatta aagtgctttt gtggtcgcta
     7921 actcaattta tcctctaaag tataattaca acgagatgtg atacttaatt ttcaattaaa
     7981 caatactttt tagagaggtg aaagtttgga aatatttgaa acaattctta tatttatagc
     8041 tgttgtgata ctaagttcgt ttgtccatac tttcatacct aaagtacccc tagcatttat
     8101 acaaattttc ttgggcatgt tactatttat taccccaatc cctgttcaat ttaattttga
     8161 ttctgaattg tttatggtaa caatgattgc gcctttgtta tttgtagaag gtgttaatgt
     8221 ttctagagtc catttaagga aatatattaa gccagtgatg atgatggcat taggattagt
     8281 cattactact gtgataggtg taggtttatt tattcattgg atttggccag atttacctat
     8341 tggagcagca tttgcaattg ctgccattct ttgtcctact gatgcagtag cagtgcaagc
     8401 aatcactaaa ggaaaggtct tgccaaaagg agcaatgaca attcttgaag gtgagtcatt
     8461 attgaatgat gctgctggta ttatttcatt taaaatagct gttggagtat tagttacagg
     8521 tgctttttca cttgttgatg ctgttcagtt gtttttaatt gcatcaattg gtggcgcagt
     8581 ggttggttta cttataggta tggcattagt aaggttccga ttaacattga tgcgtcgagg
     8641 atatgaaaac attaatatgt ttacaattat tcaattgtta acaccatttg ttacgtattt
     8701 aattgctgaa ttgtttcacg catcaggaat cattgcagca gtagttgcag gacttgtaca
     8761 tggtttcgaa cgtgacagaa ttatgcaagt acgtacacaa ctgcaaatga gttacaatca
     8821 tacatggaat atactaggtt atgttttaaa tggctttgtt ttttcaatat taggattttt
     8881 agtacctgaa gttattatta aaattatcaa aacagaaccg cacaatttaa tctttttaat
     8941 aggcatcact attgttgttg ctttagctgt ctatctattt agatttgttt gggtttatgt
     9001 cttatatcct tatttttatt tagccatcag tccattccaa aaaatgatga ctaaaaatga
     9061 tgatgataat ccaacgactg agaaaccacc aaagcgaagt ttatacgctt taattatgac
     9121 gttatgtggt gtgcatggaa caatttcttt agcaatcgca ttaacgttac cgtatttttt
     9181 agcagggcat catgctttta cgtatagaaa cgacttatta tttattgcat ctggtatggt
     9241 tattattagt ttggtagttg cgcaagtatt attgccatta ttaacgaaac ctgcacctaa
     9301 aacagtaatt ggcaatatgt cgtttaaagt tgctagaatt tatatattag aacaagttat
     9361 tgattatcta aatcaaaaat ctactttcga aacaagtttt aaatatggta acgtgattaa
     9421 agaatatcat gataaattag catttttaaa aactgtagag aaagatgatg aaaactctaa
     9481 agaattagaa cgtctacaaa aaattgcttt taatgtagaa acaaaaacat tagagtcttt
     9541 agtagatgaa ggacaaataa cgaatagtgt acttgaaaac tatatgcgtt atgctgaaag
     9601 aacacaggta tatagacaag catcattaat aagaagaatg attgtattat tacgaggtgc
     9661 tttattaaaa cgaagagtac aaacgagagt gaactccgca tcttcactta gtgttacgga
     9721 taacttaatg gaattaaata aaattaataa attagtccat tataatgtgg ttagtcgttt
     9781 gtctaaggaa acaacaaaag ataatacact tgaagttgga atggtttgtg acggttattt
     9841 aatgcgaatt gaaaacttaa caccatcaaa tttcttcaac tcagcaagtg aagatacgat
     9901 tactaaaatt aaattaaatg cattgagaga acaacgtcgc attttacgtg agttgattga
     9961 tacagatgaa gtatcagaag gtacagcgtt aaaactaaga gaagccatca attatgatga
    10021 aatggttatt gtagatagta tgacgtagtt cctaattatg ctaaaaggga ttgatgaaaa
    10081 actgaagggc ttttcatcaa tcccttttat tttaggggaa ttgaatagat agttttaaac
    10141 tatacgaatt attaatattt gagatttaat tgaaataagt tttaaaaatt ggaggagata
    10201 gattaagcga agtcatttaa aggtgaagtt aagtgtattc acaaaaaata gccacactca
    10261 tatgacatcg gatgagtgtg gcttaaggat ctatgggggg aggaaaccat agatgtttac
    10321 tttgataggc cagattaaat atcaaagtat gcgattattt atagcttgat gcaaaagtgg
    10381 tatgcctatt aaaagttact gcacatagct tttaatattc cgttcaaagg aaaggggcat
    10441 acaattgaac aatctgtaat agtactttta accagctatg ctaaaagtct agtagggaga
    10501 acagttgtcc aatcacataa gaacctctaa cttcgttagt acgattaaga aaagcttttt
    10561 agttagtatg taatacaatt tattgacgcg cgtgaatctc ttttataaga gtgtgtaggg
    10621 aatggcgttg tataaattgt attagaagaa cttctaacgc atctctgtgg ttaaaagaga
    10681 tgaagggaac gacagtttaa ttaaaactgc ataagaactt ctagcttttc tctctcgttc
    10741 aaagagaagc agctgttcgc agtttaatca aaaccacata aagcttttaa ctttactctt
    10801 tgatttaaag agtgataaat gtttacagtt taattaaaac tgcataagaa cttctagctt
    10861 ttctctttcg ttcaaagaga agcagctgtt cgcagtttaa tcaaaaccac ataaagcttt
    10921 taactttact ctttgattta aagagtgaca aatgtttaca gtttaattaa aactgcataa
    10981 gaacttctag cttttctctt tcgttcaaag agaagttcta ataccaccat atcgtgcgat
    11041 cgggaacggt atatatatta ataggagggt aatatatatt taacgcacga tatgggacta
    11101 ttagccttcg actttgttat gttgatgtgt ggcctaaaat attggagata ccaatatttt
    11161 aggttgcatc aacatcaatt catcttactt cattaaaaca cagcgtgtta tttcatgctt
    11221 ccgtgtacag tttcaatatt tgatttcatc attttgtagt aagagtcacc tttagtgcct
    11281 tctttaccga ttgaatctgt gtacacttca ccaaagatat ctttcttcgt ttcttcagat
    11341 aaactttcca ttgctttctt atcaacactt gtttctacta ataagtgttt taatttgtgc
    11401 tttttaacaa actcaatagc ttgtctcatt tgttcaggtg taccttgttt ttcagtgtta
    11461 atttcccaaa tataacctgg tgtaataccg tattgttttg agaagtactt gaaggcacct
    11521 tcacttgtaa tcatggcacg ttgttctttt ggaatgtcat taaatttgtc tttactgtca
    11581 ttatttaatt tttccaattg agcaatgtat ttgttacctt gcttttcata atctgcttta
    11641 tgttttttgt cgttatcgat aaatgtttgt tgaattgttt ttacgtattt aataccgtta
    11701 tctaaactta accatgcgtg tggatcttgt ttatctttgt tgccttcttc accgtttaaa
    11761 tagataggtt taacatcttt tgatactgcg ataacttttt tatcttttaa tgatttacca
    11821 gcctgttcta aggctttttc aaaccaaccg ttaccagtct ctaaatttaa tccgttgtat
    11881 aaaataacgt cagcgtcagt taacttttta atatctttag gtttaacttc atattcatga
    11941 ggatcttgac caacaggtac aatactatga atatcgacgt tgtctccacc aacattttta
    12001 gccatatcat ataaaattga attcgtcgtt actactttta atttgccatt tgacttatca
    12061 ctgctttgtt taccaccagt accacatgca gcaactagaa gtaataaggc taataataaa
    12121 ggtactaatt ttttcatgtt aaacttcctc gtttctttct attcgtaaat tttgtgaaaa
    12181 ataatgtgat gatataaatt acaaacgtac aaagtacgat tgtcgcacca ctaggaatgt
    12241 tgtaaatata gctgtaataa agtccgacaa ttgaacttat gacacttatt aaacttgcta
    12301 taatcatcat tgagtatagt tttttactaa ttaaaaatgc tgtagatgca ggtgtaatta
    12361 ataatgcaac tacaagaata atacctaccg tttgaatact tgctactgtt actaatgaga
    12421 gtaacaacat cacaaagtaa tgtaataacg tcgtatttag accactcatt ctactaaacg
    12481 ttggatcgaa tgtagaaatc attaatggac gatagaaaat aatgattaga ataaggacga
    12541 ttgaaccaat cacaatagtt gttaaaaatg cactatttgt gattgccagt aaattaccaa
    12601 acagaatatg gtacaaatct gtcgtagtgt ttattaagct aataataata atccccgaag
    12661 ctaagaaagc ggtaaaacta attccaatag cggcgtcagg tttcgtttta ctactagatg
    12721 tgatataacc gataaaaata cttgcgatca taccagttat aagtgcgcct acaaacattg
    12781 gaataccaaa taagaatgat agggcaacac caggtaatac tgcgtgactc attgcatctc
    12841 ccattaatga aagaccacgt aatacaatta aactaccaac tgtaccacaa actatcccta
    12901 caataattga agttatcaat gctcgattca agaattgata tgtaaataaa tgttcgacaa
    12961 actctaacat gttatattgc tcctttgact agggtcacta cagtcagtgc tactcataaa
    13021 tgtttcgttt aagcgagtga cactcatagc ctcttcacta tcaccaaagt atcgtaatgt
    13081 ttgatttaat agaataatgc gatcaaagta ttgctttgct tttgatagat catggtggat
    13141 gataagaata agttttcctt gttgttttaa gttctcgatt tttgtcatga ttaatttttc
    13201 gctactaaaa tcaattccga caaacggctc atctagaaaa taaacttcac tttcggacat
    13261 caatgctctt gctactagca cacgttgtaa ttgtccacca cttaattctg aaatttgtcg
    13321 atgacgtaaa gattctaatt ctaaatcgct taataactgt ttgagtttat cccttgctga
    13381 tttattaggt cgtctaaacc atccaatttc tttgtagcaa cctgataaaa tcacttgttc
    13441 cacacttata ggaaaatcta aatcaatatg tgctttttgt ggaatatatg taatatgttg
    13501 cagttgttgt tgtataggtt tgttatataa caatttagta ccggtagcat taaattcacc
    13561 aattaaagac ttgataaggg aagatttacc agcaccattc gggcccatga taccaattat
    13621 ttcgccgcgt actggtatcg ataaggaaat gtttttaagt acatgcttat tacctaaaaa
    13681 cagatttaaa tcttttgttt ctaacaaacg tttatacctc ctaattaaaa gtttaggcta
    13741 acctaattaa ttgtataata aactgagaat atttatcatg tcaagtaaat tcgtgatata
    13801 atatagacaa tgtatgtgag gtgaaagtat gttaactgaa gaaaaagagg actatttaaa
    13861 ggcaatcctt acgaataatg gcgataaaaa ctttgtgaca aataaaatct tatctcaatt
    13921 tttaaatatt aagcctccat ctgtaagtga aatggtagga cgtcttgaaa aagcaggcta
    13981 tgttgaaaca aaaccataca aaggtgttag attaacagag gatggtttaa cgcatacgct
    14041 tgatatcatt aagagacatc gactattaga attattttta atagaaatat tgaaatataa
    14101 ttgggaagaa gtacatcaag aagcagaaat tttagaacat cgaatttcag atttatttgt
    14161 tgaaaggctg gatagcctgt taaatttccc agaaacttgc ccgcacggcg gtgtgattcc
    14221 tagaaataat gaatataaag agaaatatat aacaacgatt ttgaattatg aacctggtga
    14281 tatcgttaca atcaaacgtg tgagagataa gaccgatttg ctaatatatt tgtctagtaa
    14341 agatatttct attggtaatg aagtggaaat tgtatcgaaa gatgaaatga ataaagtaat
    14401 tatcattaaa cgtaatgata atgtaattat tgtcagttac gaaaatgcaa tgaacatgtt
    14461 tgctgaaaaa taaaataaag aagccataaa gatatccatg attgaactga taaagacata
    14521 tggataattg ctttaggctt cttttttatt agttaattta tcaagtgagt atatttgagt
    14581 aaaatattca ctgcataaag attgaagata atccagattg tactataaat gaagataggt
    14641 acatgactga gttctttaag tgcactacca tcccactgtg gactcggacg ctggaaagtc
    14701 aatttagcaa tcgtccaact agattgtaga acttcgccta ataatacacc taaaatatat
    14761 tgataactca ttgtgacaag tagttgaatt tctactatat tttcatcttt taatataaaa
    14821 tacaacatga tagaaattaa agttataaca acaatgggtg agccttttct agatgttaaa
    14881 attaaaaaat aaataaatat caataaatag gtaaatataa agaaactagg tatctgataa
    14941 tggctcgacg ctaaacctat caataacata ataggtggca taaaataacc accaatcgtt
    15001 gtaagccatt ggcctgctag atgtctagat tgtgtaattg cgaatccttg ttgtaatgtc
    15061 tgttgtcgct ctcgtggact tgttacaatg actaaatctt ttgcacggcc accagcgagt
    15121 ttattaaaca gtacatgacc aaattcatgt gttaaaacag ggatatagtt taaaatgaca
    15181 tctaaatagt tcaaaacagg cttatgtcta tattgatgaa tagcaatata acaagctgca
    15241 acaataacga taatgtatat attaagttga attgtcgtat taaaaaagtt tgataaataa
    15301 ttcattgtta acctcatata agatattaat ttaaagtttg cttatcactt attataaatg
    15361 atattggcat caatagcgtt agactttaga cttaccttag ttaaactaat tttaattttt
    15421 gaaaaggtga atatgtgtta aaataaagca aaatcatttc gatataaata ggatgaatat
    15481 aaatactgtt aatattgatt acactaacat aataatgaaa taagatagga gattcctgtt
    15541 atgactgttg aagaaagatc caatacagcc aaagttgaca ttttaggggt cgattttgat
    15601 aatacaacaa tgttgcaaat ggttgaaaat attaaaacct tttttgcaaa tcaatcaacg
    15661 aataatcttt ttatagtaac agccaaccct gaaatagtga attacgcgac gacacatcaa
    15721 gcgtatttag agttaataaa tcaagcgagc tatattgttg ctgatgggac aggagtagtc
    15781 aaagcttcgc atcgtttaaa gcaacctcta gcgcatcgta tacctggtat tgagttgatg
    15841 gatgaatgtt tgaaaattgc tcatgtaaat catcaaaaag tatttttgct aggggcaact
    15901 aatgaagttg tagaagcggc acaatatgca ttgcaacaaa gatatccaaa catatcgttt
    15961 gcacatcatc acggttatat tgatttagaa gatgagacag tagtgaaacg aattaaactg
    16021 tttaaacctg attacatatt tgtaggtatg ggattcccta aacaagaaga atggattatg
    16081 acacatgaaa accaatttga atctacagtg atgatgggcg taggtggttc tcttgaagta
    16141 tttgctgggg ctaaaaagag agcgccttat atctttagaa aattaaacat tgaatggata
    16201 tatagagcat taatagattg gaaacgtatt ggtagattaa agagtattcc aatatttatg
    16261 tataaaatag ccaaagcaaa aagaaaaata aaaaaggcga aataatcatg atgacaaaaa
    16321 taaaaccgag gaaatcctta aatggagatt ctcggttttt tcggtttatt taataacgaa
    16381 gcgggactca tcgagtttgt ttctaaattc tttttgttcg gctttggatt tctttttaaa
    16441 atcgttaagg aaagcttcat atttaggtaa tacatcatca agttcaccgt aatcttttaa
    16501 ctttccgcct tcaatccaag caatcttagt acaaaattgt ctcacttgtc ctaagttatg
    16561 actaacgaaa aagatggttt tgttttgctc tttaaactcg taaattttat ctaaacattt
    16621 ttgtgcaaaa gtttggtcac ctacagataa agcttcgtca atgactaaga tatctggatt
    16681 aactgtgata ttaattgaaa aaccaagttt tgcacgcata ccacttgaat actttttaac
    16741 tggttgataa ataaactcac caagttcact aaattcaata atcttaggtg tcatcgcttt
    16801 aatttctttt cgcttaaagc ccatacataa cattttaaat tcgatatttt caatccctgt
    16861 aagttgtcca ctcaagccag cactaattgc gataacgctg acttcaccat tacgatccac
    16921 tttgccaaca gtaggcgaca aagaaccgcc aatgatattg ctcaacgttg atttgccgga
    16981 accattgatg ccaacaagcc ctatgacgtc accttcatat gcttttaaac taatgtcatc
    17041 taaagcgaaa aatgttttgt ttttatgttt gggaatgagc gcatctttca tacgttcttt
    17101 atttgtacga taaatacgat attcttttgt tacattttta atgtttaccg aaacgttcat
    17161 ttgtagacct tccttattca catttatcta gattataata tactactcaa cagttgttaa
    17221 attttaaaac ctgttgtaaa gtgtatagaa gattttgtta ttatcagagt gggtgttttg
    17281 acacaaaatg ttaatcatca atgataacaa tgatatttaa aaactaaact tatttcaact
    17341 tacatgattg tatactataa tgtatttgta ataaactaat attttaaaga actagacaat
    17401 aattttgata gcatccatgt atagtgatag tatttacaac aattattata atactattta
    17461 gttaagtaga gaaatagtta aacatttgaa agtgtggttt aatggaatgt cagcaatagg
    17521 aacagttttt aaagaacatg taaagaactt ttatttaatt caaagactgg ctcagtttca
    17581 agttaaaatt atcaatcata gtaactattt aggtgtggct tgggaattaa ttaaccctgt
    17641 tatgcaaatt atggtttact ggatggtttt tggattagga ataagaagta atgcaccaat
    17701 tcatggtgta ccttttgttt attggttatt ggttggtatc agtatgtggt tcttcatcaa
    17761 ccaaggtatt ttagaaggta ctaaagcaat tacacaaaag tttaatcaag tatcgaaaat
    17821 gaacttcccg ttatcgataa taccgacata tattgtgaca agtagatttt atggacattt
    17881 aggcttactt ttacttgtga taattgcatg tatgtttact ggtatttatc catcaataca
    17941 tatcattcaa ttattgatat atgtaccgtt ttgttttttc ttaactgcct cggtgacgtt
    18001 attaacatca acactcggtg tgttagttag agatacacaa atgttaatgc aagcaatatt
    18061 aagaatatta ttttactttt caccaatttt gtggctacca aagaaccatg gtatcagtgg
    18121 tttaattcat gaaatgatga aatataatcc agtttacttt attgctgaat cataccgtgc
    18181 agcaatttta tatcacgaat ggtatttcat ggatcattgg aaattaatgt tatacaattt
    18241 cggtattgtt gccattttct ttgcaattgg tgcgtactta cacatgaaat atagagatca
    18301 atttgcagac ttcttgtaat atatttatat gacgaaaccc cgctaaccat taataaatgg
    18361 aagtggggtt catttttgtt tataatttaa gtaaataaca tattaagttg gtgtattatg
    18421 aacgttttaa taaagaaatt ttatcatttg gtagttcgaa tactttctaa aatgattacg
    18481 cctcaagtga ttgataaacc gcatatcgta tttatgatga cttttccaga agatattaag
    18541 cctatcatca aagcattaaa taattcgtcg tatcagaaaa ctgttttaac aacaccaaaa
    18601 caagcgcctt atttatctga acttagcgac gatgttgatg tgatagaaat gactaatcga
    18661 acattggtaa aacaaattaa ggctttgaaa agcgcgcaga tgattattat cgataattat
    18721 tacctattac taggtggata taataagact tctaatcaac acattgttca aacgtggcat
    18781 gcaagtggtg cattaaaaaa ctttggctta acagatcatc aagtcgatgt gtctgacaag
    18841 gcaatggttc agcagtaccg taaagtttat caagcgacgg atttttactt agtgggttgt
    18901 gaacaaatgt cacaatgttt taaacagtct ttaggtgcaa cagaagagca aatgctgtat
    18961 tttgggcttc cgagaattaa taaatattac acagctgata gagcaacggt taaggcagag
    19021 ttaaaggata aatatggaat tacaaataag ttggtattat atgtaccaac atatagagaa
    19081 gataaagcag ataatagggc tattgataaa gcttattttg aaaaatgttt accaggatat
    19141 acactgatta ataaattaca tccatcaatt gaagattcag acattgatga cgtatcttca
    19201 atcgacacgt ctacattaat gctaatgtca gatataatta ttagcgacta tagttcgctg
    19261 ccaatagaag ctagcttgtt agatattcca actatatttt atgtgtatga tgaaggaaca
    19321 tatgatcagg tgagaggcct gaatcaattt tacaaagcaa taccggatag ctacaaagtg
    19381 tatactgaag aagatttaat aatgacgata caagaaaaag aacatctatt aagtccgtta
    19441 tttaaagatt ggcataagta taatactgat aaaagtttac atcagctcac agaatatata
    19501 gataagatgg tgacaaaatg aggtttacga taatcatacc tacatgtaat aatgaggcaa
    19561 caattcgaca attgttaata tctattgaga gtaaagaaca ctatagaatc ctttgtattg
    19621 atggtggttc tactgatcaa acaattccta tgattgaacg gttacaaaga gaactcaagc
    19681 atatttcatt aatacaatta caaaatgctt cgatagctac gtgtattaat aaaggtttga
    19741 tggatatcaa aatgacagat ccacatgata gtgacgcatt tatggtcata aaaccaacat
    19801 caatcgtatt gccaggtaaa ttagataggt taactgctgc tttcaaaaat aatgataata
    19861 ttgatatggt aatagggcag cgagcttaca attaccatgg tgaatggaaa ttgaaaagtg
    19921 ctgatgagtt tattaaagac aatcgaatcg ttacattaac ggaacaacca gatttgttat
    19981 caatgatgtc ttttgacgga aagttattca gtgctaaatt tgctgaatta cagtgtgacg
    20041 aaactttagc taacacatac aatcacgcaa tacttgtcaa ggcgatgcaa aaagctacgg
    20101 atatacattt agtttcacag atgattgtcg gagataacga tatagataca catgctacaa
    20161 gtaacgaaga agattttaat agatatatca cagaaattat gaaaataaga caacgagtca
    20221 tggaaatgtt actattacct gaacaaaggc tattatatag tgatatggtt gatcgtattt
    20281 tattcaataa ttcattaaaa tattatatga acgaacaccc agcagtaacg cacacgacaa
    20341 ttcaactcgt aaaagactat attatgtcta tgcagcattc tgattatgta tcgcaaaaca
    20401 tgtttgacat tataaataca gttgaattta ttggtgagaa ttgggataga gaaatatacg
    20461 aattgtggcg acaaacatta attcaagtgg gcattaatag gccgacttat aaaaaattct
    20521 tgatacaact taaagggaga aagtttgcac atcgaacaaa atcaatgtta aaacgataac
    20581 gtgtacattg atgaccataa actgcaatcc tatgatgtga caatatgagg aggataactt
    20641 aatgaaacgt gtaataacat atggcacata tgacttactt cactatggtc atatcgaatt
    20701 gcttcgtcgt gcaagagaga tgggcgatta tttaatagta gcattatcaa cagatgaatt
    20761 taatcaaatt aaacataaaa aatcttatta tgattatgaa caacgaaaaa tgatgcttga
    20821 atcaatacgc tatgtcgatt tagtcattcc agaaaagggc tggggacaaa aagaagacga
    20881 tgtcgaaaaa tttgatgtag atgtttttgt tatgggacat gactgggaag gtgaattcga
    20941 cttcttaaag gataaatgtg aagtcattta tttaaaacgt acagaaggca tttcgacgac
    21001 taaaatcaaa caagaattat atggtaaaga tgctaaataa attatataga actatcgata
    21061 ctaaacgata aattaactta ggttattata aaataaatat aaaacggaca agtttcgcag
    21121 ctttataatg tgcaacttgt ccgtttttag tatgttttat tttctttttc taaataaacg
    21181 attgattatc atatgaacaa taagtgctaa tccagcgaca aggcatgtac caccaatgat
    21241 agtgaataat ggatgttctt cccacatact tttagcaaca gtatttgcct tttgaataat
    21301 tggctgatga acttctacag ttggaggtcc ataatcttta ttaataaatt ctcttggata
    21361 gtccgcgtgt actttaccat cttcgactac aagtttataa tcttttttac taaaatcact
    21421 tggtaaaaca tcgtaaagat cattttcaac ataatatttc ttaccattta tcctttgctc
    21481 acctttagac aatattttta catatttata ctgatcaaat gagcgttcca ttaatgcatt
    21541 ccccatcata ttacgttgct tctcgccacc aaggttttta tagtctcctg cacccatgat
    21601 aacttgatta attctaaatt tacctcgttt ggtagtaatc gtatggttgt aatttgctgt
    21661 atcacttgat ccagttttta aaccatctgt acccggcaaa ctcatttttg caccttccaa
    21721 tgaaaagttg aatgtgtaat acgtaactgc atgcgttgtt ggtgctaact gctttgtaaa
    21781 gtctaatatt ttaggtgtct ctttaatcac gtgtaaatct aaaatggcat agtctctagc
    21841 agtcgttaca gtacgttctt ggtctttata ctttgttggt gcaaatgtac gtaatcttga
    21901 attttcagca cccgttggat tgacgaaatg tgtatttttc attccgatag ctttagcttt
    21961 gttattcatt aaatcaacga aatcgctggt gttttttgaa accttcttag ctaaaattaa
    22021 tgccgcggca ttactagaat tagatactgt aatttgtaat aggtctgcga ttgtccatac
    22081 ttgtccagga tatagtttcg tattactcaa ctcaggtagt gtagacataa tatattcttt
    22141 gttcgtcatt gtgactgtgt catcaagtga aagctgcccc ttatttacag cttccaatgt
    22201 taagtacatt gtcattaatt tagtcataga cgctggattc cacttagtat cgatattgta
    22261 ttgatacagt aattgtccag tttgacttac attaacagca ctcgtcggtt cgtatgcagc
    22321 cgacaaacct gcataaccat attgatttgc tgcttgtaca ggggttacgt cactgttagt
    22381 agcttgtgca tatggtgtca taatacttaa tgttaaacat aaaatgatga taatagatat
    22441 taaatttttc ataaagcgtt aatcttccct tttccaattc ttaaatattc cctaaaagca
    22501 atggttattc ctacttacgg aaatcattgc taattcactt caccttaatt aaattgttga
    22561 aaataaagtt ttctgcagtt aatttgaaaa ataatgcaaa tatattacgt gtgtagctaa
    22621 aggtgttata atgtttgtac gaagagcaaa cttactcaaa agcgattaat tttcatgttt
    22681 taatataaag actttgagaa gttattacaa aaaatgcaat agaaatattc tatcatataa
    22741 atgttatgag cggtattttg gggcaacact ttatttgatt tttaaagttt tgttgggaga
    22801 aagtatatga tagaaatgca tgtatctatc taaatgaatt aactataaat ttcaaacaga
    22861 agaggtaaaa ctatgaaacg agaaaatcca ttgtttttct tatttaaaaa actatcatgg
    22921 ccagtgggtc ttatcgttgc agctatcact atttcatcac tagggagctt aagtggacta
    22981 ttagtgccac tgtttactgg acgaattgta gataaatttt ccgtgagcca tatcaattgg
    23041 aatctaatcg cattatttgg tggtatcttt gtcatcaatg ctttattaag cggattaggt
    23101 ttatatttat taagtaaaat tggtgaaaag attatttatg cgatacgctc agttttatgg
    23161 gagcatatca tacaattaaa aatgccattc tttgacaaaa atgaaagtgg tcaattaatg
    23221 agtcgattaa ctgacgatac gaaagtgata aatgaattta tttcacaaaa gctacctaac
    23281 ttattaccat caatcgttac attagttggg tcactaatca tgttatttat tttagattgg
    23341 aaaatgacat tattaacatt tataacgata ccgatattcg ttttaattat gattcctcta
    23401 ggtcgtatta tgcaaaagat atcgacaagt acacaatctg aaattgcaaa cttcagtggt
    23461 ttgttagggc gtgtcctaac tgaaatgcgt cttgttaaaa tatcaaatac agagcgtctt
    23521 gaattagata atgcacataa aaatttgaat gaaatatata aattaggttt aaaacaggct
    23581 aaaattgcgg cagttgtaca accaatttca ggtatagtta tgttgctaac aattgcaatt
    23641 attttaggtt ttggtgcatt agaaattgcg actggtgcaa tcactgcagg tacattaatt
    23701 gcaatgatat tttatgttat tcagttatct atgcctttaa tcaatctttc cacgttagtt
    23761 acagattata aaaaggcagt cggtgcaagt agtagaatat acgaaatcat gcaagaacct
    23821 attgaaccga cagaagctct tgaagattct gaaaatgtat taattgatga cggtgtattg
    23881 tcatttgaac atgtagactt taaatatgat gtgaagaaaa tattagatga tgtgtcgttc
    23941 caaatcccac aaggtcaagt gagtgctttt gtaggccctt ctgggtctgg taaaagtacg
    24001 atatttaatc tgatagaacg tatgtatgaa attgagtcag gtgatattaa atatggcctt
    24061 gaaagtgtct atgatatccc gttatctaag tggcgacgca aaattggata tgttatgcaa
    24121 tcaaattcga tgatgagtgg tacaattaga gacaatattt tatacggaat taatcgtcat
    24181 gtttcagatg aagaacttat taattatgct aaattagcga actgtcatga ttttatcatg
    24241 caatttgatg aaggatatga cacgcttgta ggtgaacgag gattgaaact gtctggcgga
    24301 caacgtcaac gtattgatat tgctagaagt tttgttaaaa atcctgatat tttgttactt
    24361 gatgaagcaa cagctaatct cgatagtgaa agtgaattga aaattcaaga agctttagaa
    24421 acattgatgg aaggtagaac aacgattgtc attgcgcatc gtttgtctac aattaaaaaa
    24481 gccggtcaaa ttatattctt agacaaagga caggtaacag gtaaaggtac gcattcagaa
    24541 ctgatggcat cacatgcgaa gtataaaaac tttgtagtgt ctcaaaaatt aacagattaa
    24601 ttttatatat ataagtaagc ttggagcaaa tacacatata ccatcgagga aattaaagtg
    24661 tggcacattg atggatatag atgttaataa attgcttcaa gcttttgtct attttaaatc
    24721 atttgagaag ttacgacata ataattctta aattaatgaa atcgatattt taagaaaaaa
    24781 atgctcatgg tataatacaa gttataagca aacatacata tattaaatac tgtagccacg
    24841 agtcataatt cttcgtattt tacatagcaa tttaactgat tttagagtcc acggtacaga
    24901 agtttgatat ttcaatgttt ctaaattttt aaaaaattaa atcataggtg ggtgccaaat
    24961 gtttttatta atcaacatta ttggtctaat tgtatttctt ggtattgcgg tattattttc
    25021 aagagatcgc aaaaatatcc aatggcaatc aattgggatc ttagttgttt taaacctgtt
    25081 tttagcatgg ttctttattt attttgattg gggtcaaaaa gcagtaagag gagcagccaa
    25141 tggtatcgct tgggtagttc agtcagcgca tgctggtaca ggttttgcat ttgcaagttt
    25201 gacaaatgtt aaaatgatgg atatggctgt tgcagcctta ttcccaatat tattaatagt
    25261 gccattattt gatatcttaa tgtactttaa tattttaccg aaaattattg gaggtattgg
    25321 ttggttacta gctaaagtaa caagacaacc taaattcgag tcattctttg ggatagaaat
    25381 gatgttctta ggaaatactg aagcattagc cgtatcaagt gagcaactaa aacgtatgaa
    25441 tgaaatgcgt gtattaacaa tcgcaatgat gtcaatgagc tctgtatcgg gagctattgt
    25501 aggtgcgtat gtacaaatgg taccaggaga actggtacta acggcaattc cactaaatat
    25561 cgttaacgcg attattgtgt catgcttgtt gaatccagta agtgttgaag agaaagaaga
    25621 tattatttac agtcttaaaa acaatgaagt tgaacgtcaa ccattcttct cattccttgg
    25681 agattctgta ttagcagcag gtaaattagt attaatcatc atcgcatttg ttattagttt
    25741 tgtagcgtta gctgatctat ttgatcgttt tatcaatttg attacaggat tgatagcagg
    25801 atggataggc ataaaaggta gtttcggttt aaaccaaatt ttaggtgtgt ttatgtatcc
    25861 atttgcgcta ttactcggtt taccttatga tgaagcgtgg ttggtagcac aacaaatggc
    25921 taagaaaatt gttacaaatg aatttgttgt tatgggtgaa atttctaaag atattgcatc
    25981 ttatacacca caccatcgtg cggttattac aacattctta atttcatttg caaacttctc
    26041 aacgattggt atgattatcg gtacattgaa aggcattgtt gataaaaaga catcagactt
    26101 tgtatctaaa tatgtaccta tgatgctatt atcaggtatc ctagtttcat tattaacagc
    26161 agctttcgtt ggtttatttg catggtaata tgtcgaagag tgactatgat aatacatttt
    26221 aactaataaa tatgtccagg catgtcgtct attgatatag gtgagatgct tggacttttt
    26281 tattattgat ataaaggtat ttaaatattt ttaaagttac cgaaattgaa gcattataaa
    26341 aaccaagtgc acatggtaat acacttggct tttatgggaa atgaatatta ttgtacatat
    26401 gacagtaagg actaggtaca gtcatagtac ttcgagcaaa atttgttttg ttattataaa
    26461 caacacaaag gagataactt ctctattgaa gaagttaaaa acattatagc agacaatgaa
    26521 atgaaagtaa attaaaaatt cagaatattt ttaattatta tattgtgagt gatatttatt
    26581 agggaa
//
LOCUS       DAMQWL010000026        25910 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.026, whole genome shotgun sequence.
ACCESSION   DAMQWL010000026 DAMQWL010000000
VERSION     DAMQWL010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 25910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25910
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.026"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            65..2338
                     /gene="recJ"
                     /locus_tag="PF788_001004"
     CDS             65..2338
                     /gene="recJ"
                     /locus_tag="PF788_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDG6303275.1"
                     /translation="MIKPKYKWKLTKPAEYISDELTSKLKLTPIVKKILESKSIIDEQ
                     AIESIISDTDINHDALQLSDMTKTIERIKRAIANDEKILVYGDYDADGVTATTILVIT
                     LQLLGAQVGWHIPNRFTEGYGPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLG
                     VDVIVTDHHEIGSTLPEAYAIVHPMHPSFNYPFQQLCGAGVAYKLAQALIENVPDYFK
                     ALVAIGTIADLVSLTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFI
                     IGPRLNAVGRLDDASLACELLMTDVEEEAAFLAEQVEHFNRERKDIVATITEEAMAMA
                     ETKVKKGDLFLLLAKENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSID
                     QVSMFEILSAHQELIAKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVK
                     QVDVLLTENDITIKNIRDMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTL
                     GESNIAALFWQNGHLEPELQDEQPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILD
                     YRSKRKSLPFTENDENIVVLIHPKSDKVNANEYYYGEEIKQQTDKVVLRDLPTSMEDL
                     SNSLQQLQFSQLYIVLQHNHSIYFDGIPNMDIFKKCYKALITKQETNIQKEGMLLCQH
                     LSVKPDTLKFMLKVFLDLKFVTQEDGLIRINQQPDKRSIDSSKVYQLRQQRMDVEKQL
                     LYQDFSEIKNWIKSQLS"
     gene            2360..2878
                     /locus_tag="PF788_001005"
     CDS             2360..2878
                     /locus_tag="PF788_001005"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009559512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDG6303276.1"
                     /translation="MDLKQYVSEVQDWPKPGVSFKDITTIMDNGEAYGYATDKIVEYA
                     KDRDVDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYDLEYGTNVLT
                     MHKDAIKPGQRVLITDDLLATGGTIEAAIKLVEKLGGIVVGIAFIIELKYLNGIEKIK
                     DYDVMSLISYDE"
     gene            3306..5495
                     /locus_tag="PF788_001006"
     CDS             3306..5495
                     /locus_tag="PF788_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HDG6303277.1"
                     /translation="MNNEYPYSADEVLHKAKSYLSADEYEYVLKSYHIAYEAHKGQFR
                     KNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIV
                     DGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQ
                     IRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFRIVNLMKKKRSEREAYI
                     ETAIDRIRTEMDRMNIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVNSIN
                     DCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHE
                     IAEHGVAAHWAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDAQEFMETLKYDLQS
                     DKVYAFTPASDVIELPYGAVPIDFAYAIHSEVGNKMIGAKVNGKIVPIDYILQTGDIV
                     EIRTSKHSYGPSRDWLKIVKSSSAKGKIKSFFKKQDRSSNIEKGRMMVEAEIKEQGFR
                     VEDILTEKNIQVVNEKYNFANEDDLFAAVGFGGVTSLQIVNKLTERQRILDKQRALNE
                     AQEVTKSLPIKDNIITDSGVYVEGLENVLIKLSKCCNPIPGDDIVGYITKGHGIKVHR
                     TDCPNIKNETERLINVEWVKSKDATQKYQVDLEVTAYDRNGLLNEVLQAVSSTAGNLI
                     KVSGRSDIDKNAIINISVMVKNVNDVYRVVEKIKQLGDVYTVTRVWN"
     gene            5507..5959
                     /locus_tag="PF788_001007"
     CDS             5507..5959
                     /locus_tag="PF788_001007"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDG6303278.1"
                     /translation="MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQNSTEQDADVI
                     AKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAV
                     KIYEYFNDALRAYGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ"
     gene            5956..6831
                     /locus_tag="PF788_001008"
     CDS             5956..6831
                     /locus_tag="PF788_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDG6303279.1"
                     /translation="MKKIEAWLSKKGLKNKRTLIVVIAFVLFIIFLFLLLNSNSEDSG
                     NITITENAELRTGPNAAYPVIYKVEKGDHFKKIGKVGKWIEVEDTSSNEKGWIAGWHT
                     NLDIVADNTKEKNPLQGKTIVLDPGHGGSDQGASSNTKYKSLEKDYTLKTAKELQRTL
                     EKEGATVKMTRTDDTYVSLENRDIKGDAYLSIHNDALESSNANGMTVYWYHDNQRALA
                     DTLDATIQKKGLLSNRGSRQENYQVLRQTKVPAVLLELGYISNPTDETMIKDQLHRQI
                     LEQAIVDGLKIYFSA"
     gene            7292..8554
                     /locus_tag="PF788_001009"
     CDS             7292..8554
                     /locus_tag="PF788_001009"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDG6303280.1"
                     /translation="MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFE
                     STDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPI
                     KLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLK
                     LVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIK
                     TAPRITDFLNEESKAYYEQVKAYLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNY
                     DGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFI
                     VTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELE
                     NNKIDVKNMTTGESETIELDALVEYFKK"
     gene            8570..10336
                     /gene="aspS"
                     /locus_tag="PF788_001010"
     CDS             8570..10336
                     /gene="aspS"
                     /locus_tag="PF788_001010"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDG6303281.1"
                     /translation="MSKRTTYCGLVTEAFLGQEITLKGWVNNRRDLGGLIFVDLRDRE
                     GIVQVVFNPAFSEEALKIAETVRSEYVVEVQGTVTKRDPETVNPKIKTGQVEVQVTNI
                     KVINKSETPPFSINEENVNVDENIRLKYRYLDLRRQELAQTFKMRHQITRSIRQYLDD
                     EGFFDIETPVLTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLLMISGFDKYYQI
                     VKCFRDEDLRADRQPEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGVEINGAFPR
                     MTYKEAMRRYGSDKPDTRFEMELIDVSQLGRDMDFKVFKDTVENDGEIKAIVAKGAAE
                     QYTRKDMDALTEFVNIYGAKGLAWVKVVEDGLTGPIGRFFETENVETLLTLTGAEAGD
                     LVMFVADKPNVVAQSLGALRVKLAKELGLIDETKLNFLWVTDWPLLEYDEDAKRYVAA
                     HHPFTSPKEADIAKLGTAPEEAEANAYDIVLNGYELGGGSIRIHDGELQEKMFEVLGF
                     TKEQAQEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTASATCL
                     LTNAPGEVSDKQLEELSLRIRH"
     gene            10414..10604
                     /gene="ssrS"
                     /locus_tag="PF788_001011"
     ncRNA           10414..10604
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PF788_001011"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            10669..10797
                     /locus_tag="PF788_001012"
     CDS             10669..10797
                     /locus_tag="PF788_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303282.1"
                     /translation="MGFIAFNKCFLVEFWENNQSDNAKYKILSYYVLMYKSVKEVK"
     gene            10797..11570
                     /locus_tag="PF788_001013"
     CDS             10797..11570
                     /locus_tag="PF788_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HDG6303283.1"
                     /translation="MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALART
                     NIGHIILIDKDDVDITNVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYT
                     EETYEEIFDNYDIDYFVDASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTIS
                     DISKTHTDPMAKIIRQKLKKLGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQ
                     MPPSSNAFVPSVVGLICASYVVNDVLKDIPVRRIKDKGQ"
     gene            complement(11731..13005)
                     /locus_tag="PF788_001014"
     CDS             complement(11731..13005)
                     /locus_tag="PF788_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500242.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDG6303284.1"
                     /translation="MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMI
                     FYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH
                     RLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
                     TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHV
                     TLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTI
                     VRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPKSNSA
                     MSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPD
                     KLKNKIYYEPKTTSKSEQQLKEIYNNLLKQRP"
     gene            13090..13512
                     /locus_tag="PF788_001015"
     CDS             13090..13512
                     /locus_tag="PF788_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002458938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HDG6303285.1"
                     /translation="MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQ
                     LVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPPAQKQ
                     LWIRMRDAVRDVLDNTTLKYLAEYVDTSEDLDGYMFYI"
     gene            13612..13794
                     /locus_tag="PF788_001016"
     CDS             13612..13794
                     /locus_tag="PF788_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HDG6303286.1"
                     /translation="MADESKFDQFKGNVKETVGNVTDNKELEKEGQQDKVIGKAKEVV
                     ENAKNKITDAIDKLKK"
     gene            13834..13980
                     /locus_tag="PF788_001017"
     CDS             13834..13980
                     /locus_tag="PF788_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303287.1"
                     /translation="MSFMDKAKDAVEKFKNSDNEQVKNVKDKINEYTGSNNEEKKENE
                     DKEK"
     gene            complement(14217..15230)
                     /locus_tag="PF788_001018"
     CDS             complement(14217..15230)
                     /locus_tag="PF788_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDG6303288.1"
                     /translation="MAIKYSALNLVPIREGEDEQTAINDMVNLAQHLDELSYERYWIA
                     EHHNAPNLVSSATALLIQHTLEHTKHIRVGSGGIMLPNHAPLIVAEQFGTMATLFPNR
                     VDLGLGRAPGTDMMTASALRRDQHDGVYKFPEEVSLLQQYFGPAHQQAYVRAYPAVGK
                     NVPLYILGSSTDSAHLAARKGLPYVFAGHFAPQQMKEAIEIYKTLFEPSDVLDEPYVI
                     VCLNTIVAENDDEAQYLASSMAQVMVSITRGRMQPVQPPTHELQNILTPREYAMAMER
                     QKISLIGSENTVQQKIQDFMETYGEVNEIMAISYIYDKDMQLDSYRRFKNVINQINEK
                     NTL"
     gene            15542..16684
                     /locus_tag="PF788_001019"
     CDS             15542..16684
                     /locus_tag="PF788_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDG6303289.1"
                     /translation="MEIYADYAATTPVKPEVVDAMMTIYNSHYGNPSSIHAKGRDARK
                     YLDESRRQIAQLLGADTHEIIFTSGATESNNTAIKGIVKANEQLGNHIITSKIEHHSV
                     LHVFEQLEREGFDVTYLDVDDTGAIDLDQLEETITDKTILVSIMFVNNEVGTVQQIYD
                     IQDIIAETNAYFHVDAVQAIGHLDVKFDEFEIDAMSITAHKFGGPKGVGALLVKDHVT
                     LDYPQLGGEQELKRRAGTENLAQIVGMAKALQLAEKNRDDNNIHLMNLKEQFLVKLQE
                     RAIPFELNGSMTDATGHIVNLYFPFVEVETMLTLLDMAQIYVSSGSACTAGSTQPSHV
                     LDAMFEDEERSNHSIRFSFNELTTENEINAIVAEIHKIYFKFKEES"
     gene            16685..17803
                     /gene="mnmA"
                     /locus_tag="PF788_001020"
     CDS             16685..17803
                     /gene="mnmA"
                     /locus_tag="PF788_001020"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDG6303290.1"
                     /translation="MSNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTD
                     ENGVCTATEDYNDVIEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMC
                     NKEIKFKAFLDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQ
                     QQLSKVMFPIGDIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQP
                     GDMITLDGKKMGKHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHD
                     ALYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEP
                     VRAITPGQAVVFYQGDVCLGGATIDDVFKNEGQLNYVV"
     gene            18265..18933
                     /locus_tag="PF788_001021"
     CDS             18265..18933
                     /locus_tag="PF788_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDG6303291.1"
                     /translation="MIDQQTIYQYIQNGKIEEALQALFGNIEENPTIIENYINAGIVL
                     ADANEIEKAERFFQKALTIDPKNGVVFFNLANVYYNQQRYQEAIKLYQQALQTEIEQV
                     DCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQL
                     KHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKM
                     KEEE"
     gene            18935..21412
                     /locus_tag="PF788_001022"
     CDS             18935..21412
                     /locus_tag="PF788_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HDG6303292.1"
                     /translation="MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDT
                     MPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKEMPQTKEAIISYLSSDLF
                     KGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIM
                     IRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAY
                     NDNERLKAALLYTLEEECIKQGHTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQY
                     LNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDA
                     NQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVN
                     DDYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDE
                     MSMVDTWLFHQFLSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVY
                     RQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVNKGYTM
                     ADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPN
                     DNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQ
                     GSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLLGDPEAFDIGLKTNGQARLTQ
                     LCTLLKNYFNSEDEEMLENTATNDTGASQTTIDDQVEAPMSSNDSEEVMSDSTKTDTN
                     VLTEATMFKIDPMINMGEITPYDFIER"
     gene            21755..24385
                     /gene="alaS"
                     /locus_tag="PF788_001023"
     CDS             21755..24385
                     /gene="alaS"
                     /locus_tag="PF788_001023"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDG6303293.1"
                     /translation="MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSG
                     VATLKKYFDGRETPKKPRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQ
                     EAIEFAWEFLTSDKWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWD
                     IGEGPSGPNTEIFYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYT
                     PLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFK
                     VIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVAD
                     IMEPYYPNVKEKADFIKRVIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAF
                     KLYDTYGFPIELTEEIAVQAGLKVDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLK
                     NITSASTFVGYDTATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVAD
                     TGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS
                     ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKG
                     IDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAPFSIELCGGIHVRNTSEIGLFK
                     IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDE
                     EKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSK
                     LQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVGGKGGGRPDMAQGGG
                     TQPENISKSLSFIKDYIKNL"
     gene            24448..24708
                     /locus_tag="PF788_001024"
     CDS             24448..24708
                     /locus_tag="PF788_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HDG6303294.1"
                     /translation="MENFDKTMKFDYEELPTQDVRDVLNNVYRTLDERGYNAVNQIVG
                     YLLSGDPAYIPRQNEARNQIRHIDRDVIMEELVSYYLKEQNK"
     gene            24712..25140
                     /gene="ruvX"
                     /locus_tag="PF788_001025"
     CDS             24712..25140
                     /gene="ruvX"
                     /locus_tag="PF788_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDG6303295.1"
                     /translation="MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELG
                     IDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERL
                     STMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH"
     gene            25155..25463
                     /locus_tag="PF788_001026"
     CDS             25155..25463
                     /locus_tag="PF788_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HDG6303296.1"
                     /translation="MTEHNHDSQLEINNEEELLTLFDEEGNEVLYRKVLEFYHPEFKK
                     EYVILAEEGAQSDEDDMIELVPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTEMEE
                     "
     gene            25748..>25910
                     /locus_tag="PF788_001027"
     CDS             25748..>25910
                     /locus_tag="PF788_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDG6303297.1"
                     /translation="MDDLNKKYLIDLHQHQNSSIEVLREFAEVNEVPIVDRLTLDLIK
                     QLIRMNNVKN"
BASE COUNT         9406 a         3580 c         5004 g         7920 t
ORIGIN      
        1 taagtgcttt ttatttaaag taattttaga tataatgtct tttggaaatg aggcgtaaat
       61 atatatgatt aaaccgaagt ataagtggaa attaactaaa ccagctgaat acataagtga
      121 tgaattaaca tcaaaattaa agttaacgcc aatcgtaaaa aaaatattag aaagtaaatc
      181 gattattgat gaacaagcaa tagaatccat catttcagat acagatatca atcatgatgc
      241 actgcaattg agcgatatga ctaagactat tgaaagaatt aaaagagcga tagcgaatga
      301 tgagaaaatc ctagtttatg gtgattacga tgccgacggt gttaccgcaa ctacaatttt
      361 agtgataaca ttacaacttt taggtgcaca agtaggatgg catattccta accgctttac
      421 cgaaggatat ggaccaaacg aactagcatt tagaaatgct catgatgaag gcataacatt
      481 aatcataact gttgataatg gcatacaagg tcataatgaa attaaaatgg ttcaagattt
      541 aggagttgat gtcattgtaa ctgatcatca tgaaattggt agtacattac cagaagcata
      601 tgcaatcgta catccaatgc atccatcgtt taattatccg ttccaacaat tgtgtggtgc
      661 aggtgttgca tacaaattag cacaagcatt gattgaaaat gtacctgatt attttaaagc
      721 attagttgcg ataggtacca ttgcggattt agtatcctta actgatgaaa atcgatcatt
      781 agtgaaacaa ggattaaaag tcttaaatga tcaatgtccg acctctgtta aagcattgct
      841 aaaagaagcg ggatacaatg acaatattga tgaagaaaca attggtttta ttattggacc
      901 tagacttaat gctgtaggtc gtttagatga cgcatcatta gcttgcgaat tgttgatgac
      961 tgacgtcgaa gaagaagctg catttttagc agaacaagtt gaacatttta accgtgaaag
     1021 aaaagatatt gtagcaacta tcacagaaga agcaatggct atggcagaaa cgaaagttaa
     1081 aaagggagat ttatttttac ttttagcaaa agaaaattgg catgaaggtg tcttaggtat
     1141 tgttgcttcg aaaattgtcg aaacatttgc tttgccaaca ttaattttaa atattgatag
     1201 ggagcaaaat catgcaaaag gctccgccag atcaattgat caagtgtcga tgtttgaaat
     1261 actatcagca catcaagagt taatcgctaa atttggcggc catcatatgg ctgcaggtat
     1321 gacgatggat attgaaaata tagaatcgtt agctgaaggt ttaaataaat ggatgaaaga
     1381 attatctaaa acaacttcgt tagatcccgt aaagcaagta gatgtattat taacagaaaa
     1441 tgatataacg attaaaaata ttcgtgatat gaatcgttta agacccttcg gaacagattt
     1501 ttctagacct atttttgaaa tggatgattt atcagtttct tcagttaagg cgataggtca
     1561 acaaaaaaat catctaaaat tgacacttgg tgaaagtaat atcgccgcgc tattttggca
     1621 aaatggacac ttagaacctg agttacaaga tgaacagcca attaatatat taggatctgt
     1681 tcaaatcaac gaatggaatg gtaatcaatc accgcaaata attattcaag atattgcgat
     1741 gaatgaacag caaatattag attatagaag taagcgaaaa agtttacctt ttacagaaaa
     1801 tgatgaaaat attgtcgtgc ttattcatcc taaaagtgat aaagtaaatg cgaatgaata
     1861 ttattatggt gaagaaatta aacaacaaac tgataaagta gtattaagag atttaccaac
     1921 gtcaatggaa gacttgtcta attccttgca acaactgcaa ttttctcaac tttatatagt
     1981 tttgcaacat aatcattcga tttacttcga tggtatacct aatatggata tttttaaaaa
     2041 gtgttataaa gcattaataa ctaaacaaga aacaaatatc cagaaagagg gtatgttatt
     2101 gtgtcaacat ttaagtgtga aaccagatac acttaaattc atgttgaaag ttttcttaga
     2161 cttaaaattt gtaacacaag aagatggttt aattcgaatc aatcaacaac ctgataaaag
     2221 atcgattgat tccagcaaag tatatcaatt aagacaacaa cgtatggatg ttgaaaagca
     2281 attattatat caagattttt cagaaataaa aaattggata aagtcacaat tgtcgtgagc
     2341 aatttaggag gaaatattaa tggatttaaa gcaatacgta tcagaagttc aagattggcc
     2401 gaaaccaggt gttagtttca aggatattac tacaattatg gataatggtg aagcatatgg
     2461 ctatgcaaca gataaaattg tagaatacgc aaaagacaga gatgttgata tcgttgtagg
     2521 acctgaagcg cgtggcttta tcattggctg tcctgtagct tattcaatgg ggattggctt
     2581 tgcacctgtt agaaaagaag ggaaattacc tcgtgaagtc attcgttatg agtatgacct
     2641 agaatatggt acaaatgttt taacaatgca caaagatgca attaaaccag gtcaacgtgt
     2701 gttaattaca gatgatttat tagctactgg tggtacgatt gaagcagcaa taaaattagt
     2761 tgaaaaatta ggcggtatcg tagtaggtat tgcatttata attgaattga aatatttaaa
     2821 tggtattgaa aaaattaaag attacgatgt tatgagttta atctcatacg acgaataata
     2881 aataatataa ttttatcaaa tgaaatcctt catcaaatgt ataagaacca atgacttaat
     2941 taaaaaagtt gtttaagttt tcttaacatg agatgttagg attttttatt tactgaaaat
     3001 gttagatgat tgagcattat accttaataa catcgtttat ttatttcata aattgtagta
     3061 tcatagaact aatatttaaa aaatgaaaca gtagatttag gtcgaatttt tgtaaaagtt
     3121 ttaaaagtag gaatagtata caaattaaac tcgctcaagt aaaattaata ttacgattaa
     3181 tgacgacagg ataaatattt atcgtcgacg gacgtatgat tggtgtggga caaatactat
     3241 tcaacaagag tacctaaatc attgtttaag gcgaagtaat aaatatgaat ggggtgtatc
     3301 atataatgaa caacgaatat ccatatagtg cagacgaagt tcttcacaaa gcaaaatcat
     3361 atttgtcagc agatgaatat gagtatgttt taaaaagcta tcatattgct tatgaagcac
     3421 ataaaggtca gttccgaaaa aacggattac catacattat gcatcctata caagttgcag
     3481 gtattttaac agaaatgcga ttagacggac cgacgattgt cgcaggtttt ttgcatgatg
     3541 taattgaaga tacaccgtat acatttgaag atgtaaaaga aatgttcaat gaagaagttg
     3601 ctcgaattgt tgatggtgtg acgaagctta aaaaagtaaa ataccgctca aaagaagaac
     3661 aacaagctga aaatcatcgc aagttattta ttgcgattgc caaagatgta cgcgtaattt
     3721 tggtgaaatt agcagacaga ttacataata tgcgtacctt gaaagccatg ccgcgcgaaa
     3781 aacaaattag aatttctcga gaaacattag aaatttatgc accattagca catcgtcttg
     3841 gtattaatac aatcaaatgg gaactagaag atacggctct tcgttatatt gataatgtgc
     3901 aatattttag aatagtcaat ttaatgaaga agaaacgtag tgaacgtgaa gcgtatatcg
     3961 aaacggctat tgatagaata cgtactgaaa tggaccgaat gaatatcgaa ggcgatataa
     4021 atggtagacc taaacatatt tacagtattt atcggaaaat gatgaagcag aaaaaacaat
     4081 ttgatcaaat ttttgatttg ttggcgatac gtgttattgt caattctatt aatgattgtt
     4141 atgcgatact tgggttggtg catacgttat ggaaaccgat gccaggacgt tttaaagatt
     4201 atattgcaat gcctaaacaa aatttgtatc agtcattgca tactacagta gtaggcccaa
     4261 atggagaccc gctcgaaatc caaatacgaa cgtttgatat gcacgaaatt gctgagcatg
     4321 gtgttgcagc acactgggct tacaaagaag gtaaaaaagt aagtgaaaaa gatcaaactt
     4381 atcaaaataa gttaaattgg ttaaaagaat tagctgaagc ggatcataca tcgtctgacg
     4441 ctcaagaatt tatggaaacc ttaaaatatg acttacagag tgacaaagta tacgcattta
     4501 ccccagcgag tgatgttatt gagttgccat atggtgctgt gccgattgat tttgcttatg
     4561 cgattcacag tgaagtaggt aataagatga ttggtgccaa ggtgaatggc aaaattgtac
     4621 caattgacta tattttacaa acaggcgata ttgttgaaat acgtactagt aaacattcat
     4681 atggaccaag tcgtgattgg ttgaaaattg ttaaatcgtc tagtgccaaa ggtaaaatta
     4741 aaagtttctt caaaaaacaa gatcgttcat ctaatattga aaaaggccga atgatggttg
     4801 aagctgaaat aaaagagcaa ggatttagag tcgaagatat tttgacagag aaaaatattc
     4861 aggttgttaa tgaaaaatat aactttgcaa atgaagatga tttattcgca gctgtaggat
     4921 ttggcggcgt gacatcctta cagattgtta ataaattaac tgaaagacaa cgtattttag
     4981 ataaacaacg tgctttaaat gaagcacaag aagttacgaa atcattgcct attaaagaca
     5041 acatcattac tgatagtggt gtctatgtag aaggtttaga aaatgtactt atcaagttgt
     5101 caaaatgttg taatcctata ccaggtgatg atattgtagg ttatatcacc aaaggtcacg
     5161 gtattaaagt acatcgcact gattgcccaa atattaagaa cgaaactgaa cgactaatta
     5221 atgttgaatg ggtaaaatca aaagacgcaa ctcaaaaata tcaggttgat ttagaggtaa
     5281 ctgcgtatga ccgaaatggc ttgttgaatg aagtactaca agctgttagc tcgacagccg
     5341 gcaatttaat taaagtttca ggacgttcag atattgataa aaatgcaata ataaatatta
     5401 gtgtcatggt gaaaaacgtg aatgatgttt atcgtgtggt agaaaagatc aaacaacttg
     5461 gtgatgttta tacagtaaca agagtttgga actagaggtg caaaatatga aagtagttgt
     5521 acaaagagtt aaagaagcat cggtgacgaa tgatacatta aataatcaaa tcaaaaaagg
     5581 atattgttta ttagtcggta tcggtcagaa ctctacagag caagatgcag atgtaattgc
     5641 aaagaaaatt gctaatgcaa gattatttga agatgacaat aataaattaa actttaatat
     5701 ccaacaaatg aatggtgaaa tactatcagt ttcacaattt actctctatg cagatgtaaa
     5761 aaaaggtaac cgtccaggtt tctcaaattc taaaaatcct gatcaagcgg taaaaattta
     5821 tgagtatttt aatgatgcgc tacgagcgta tggtcttact gtgaaaacag gtgaatttgg
     5881 aacacacatg aatgttagca taaataatga tggtccagtc actattattt atgaaagtca
     5941 ggacggcaaa attcaatgaa aaaaatagag gcatggttat ctaaaaaggg tcttaaaaat
     6001 aaacgtactc taatagtagt gattgccttt gtcttattta tcatcttttt atttttattg
     6061 ctgaatagca atagtgaaga tagtgggaac atcacgataa ctgaaaatgc tgaattacgt
     6121 acaggtccaa acgctgcgta tccagtcata tataaagttg aaaaaggtga ccattttaaa
     6181 aagattggta aagtaggtaa atggattgaa gttgaagata catccagtaa tgaaaaaggt
     6241 tggatagctg gatggcacac aaatttagat attgtcgcgg ataatacgaa ggagaaaaat
     6301 cctttgcaag gtaaaacaat agtgcttgat cctggtcatg gaggtagtga ccagggtgct
     6361 tcaagcaata ctaaatataa aagtttagaa aaagattata cgttgaaaac agcaaaagaa
     6421 ttgcagcgta ctttagaaaa agaaggcgca actgttaaga tgacaagaac agacgataca
     6481 tatgtttcac tagaaaatcg tgatatcaaa ggcgatgcct atttgagtat acataatgat
     6541 gcgttagaat catctaatgc aaatggaatg acagtttatt ggtatcatga taatcaaaga
     6601 gctttagcag atacgttaga cgctacgatt cagaagaaag gtctactttc taatcgcggt
     6661 tcaagacaag aaaattatca agtgttaaga caaacaaaag ttcctgctgt tttattagaa
     6721 ttaggttata ttagtaaccc aactgatgaa acgatgatta aagatcaatt acatagacaa
     6781 attttagaac aagcaattgt tgatggcctt aaaatttatt tttctgcgta gggcttgcaa
     6841 aaatatgtga aagtagttat cattgatatt gaattttata actaaaaccg ttagtattct
     6901 tgaaatggta aatgaaatag gtagcaatct aactaagatt gtgtaggaat ataatccata
     6961 gactgaaaga ttatgctgag tagtttatat acattgaaca caagaagagg tgctttatga
     7021 aaagtaaagc cgttaaacgt acgttaaacg ttttgagtgg gtttattaaa tgcacgctta
     7081 taaaaagtaa tgatgattac aattaggcat gttttttaaa ccaatgaggg tggcaacacg
     7141 gatattcgtc ccttgtgcag tttcaggctg tgcaagggct ttttcttttg cttttaagat
     7201 tatgatttat cgtgcaaagt taagtggtcg tatatagttt tagttttaaa aaggtaatta
     7261 aataaaatag tttgccgagg gagatgtcaa aatgattaaa atacctagag ggacgcagga
     7321 tattttacct gaagattcaa agaaatggcg ttacattgaa aatcaattag atgaattaat
     7381 gacattttat aattataaag aaataagaac accaattttt gaaagtacag atctttttgc
     7441 aagaggtgtt ggtgattcaa ccgatgtcgt acaaaaagaa atgtatacat ttaaagataa
     7501 aggcgataga agtattacat taagacctga gggaacagct gcagttgtgc gttcatatat
     7561 tgaacataaa atgcaaggta atccaaacca accaattaaa ctttattaca atggaccgat
     7621 gtttagatat gaacgtaagc aaaaaggacg ctatcgtcaa tttaatcaat ttggtgtaga
     7681 agctattggt gctgaaaatc ctagcgtaga tgcagaagta ttagctatgg ttatgcatat
     7741 ttatcaatca tttggattaa aacatttaaa gcttgttatt aatagtgtag gggatatggc
     7801 gtctcgaaaa gaatataacg aagcgttagt gaaacacttt gaaccagtaa ttcatgaatt
     7861 ttgttcagat tgtcaatcac gtttgcatac aaatccgatg cgaattttgg attgtaaagt
     7921 agaccgtgat aaagaagcga ttaagactgc acctagaatc actgatttct taaatgagga
     7981 atctaaggca tattatgaac aagtaaaagc ttatttagat gatttaggta ttccatatat
     8041 tgaagatcct aacttagttc gtggattgga ttattataca catacagcat ttgaattaat
     8101 gatggataac cctaactatg atggtgccat tacaacgctt tgtggtggtg gccgttataa
     8161 tggtttatta gaattgctag atggtccaag tgaaacaggt attggttttg cgctaagtat
     8221 agaacgatta ttgcttgcac ttgaagaaga aggtatcgaa ttagatattg aagaaaactt
     8281 agatttattc attgttacaa tgggtgatca agcagatcga tatgctgtga agctattaaa
     8341 tcatttgaga cataatggta ttaaagcaga taaagactat ttacagcgta aaattaaagg
     8401 acaaatgaaa caagcagacc gtttaggtgc caagtttaca atcgttattg gtgatcaaga
     8461 attagaaaat aataaaatcg atgttaaaaa tatgacaact ggtgaatctg aaacaattga
     8521 attagacgca ttagtcgaat attttaagaa gtagagaggg cgttaaaata tgagtaagag
     8581 aacaacttat tgtggattag ttactgaggc atttttagga caagaaatta cattaaaagg
     8641 atgggttaac aatcgtcgtg accttggtgg attgattttc gttgatttaa gagatagaga
     8701 aggaattgta caagtcgtgt ttaatcctgc attttcagaa gaggcattga aaattgctga
     8761 aacagtacgt tctgaatatg ttgtagaagt tcaaggtaca gttacgaagc gtgaccctga
     8821 aacagttaat cctaaaatta aaactggcca agttgaagta caagttacaa atattaaagt
     8881 gattaataaa tctgagacac caccattttc tataaatgaa gaaaatgtta acgttgatga
     8941 aaatattcga ttaaaatacc gttatttaga tttacgtcgt caagagttag cgcaaacatt
     9001 taaaatgaga catcaaatta cacgttctat tcgtcaatat ttggatgatg aagggttctt
     9061 tgacatcgaa acaccagtac taacgaagtc aacacctgag ggtgcacgtg actatttagt
     9121 accatctcgt gttcatgatg gtgaatttta tgcattacca caatcaccac aattatttaa
     9181 gcaattattg atgattagtg gatttgacaa atactaccaa atcgtaaaat gcttccgtga
     9241 cgaagattta cgtgcagatc gtcaacctga atttacacaa gtcgatattg aaatgagttt
     9301 tgtagaccaa gaagatgtga tgcaaatggg tgaagaaatg cttaaaaaag ttgttaaaga
     9361 agttaaaggc gttgaaatta atggcgcttt cccacgcatg acatataaag aagcgatgcg
     9421 tcgctatggt tctgataaac cagatacacg ttttgaaatg gaattaattg acgtttctca
     9481 attaggacgt gatatggact ttaaagtatt taaagatact gttgaaaatg atggtgaaat
     9541 taaagcaatt gtcgctaaag gtgcagctga acaatatact cgtaaagata tggatgcttt
     9601 aacagaattt gtaaacatct atggtgctaa aggattagcg tgggttaaag ttgtggaaga
     9661 tggtttgaca ggtccaattg gacgtttctt tgaaacagaa aatgttgaaa cattacttac
     9721 attaactggt gctgaagctg gtgacttagt aatgtttgtt gcagacaaac caaatgtcgt
     9781 tgcacaaagt ttaggtgcat tacgtgtcaa attagctaaa gaattaggtt taatcgatga
     9841 aacaaaatta aacttcttat gggtgacaga ttggccatta ttagaatatg atgaagatgc
     9901 gaaacgttac gttgcagcac atcatccatt tacatctcca aaagaagctg atattgctaa
     9961 gcttggcact gcgccagaag aagctgaggc aaatgcttat gacatagtat taaatggtta
    10021 tgaattaggt ggcggttcaa tcagaattca tgatggtgag ttacaagaaa aaatgttcga
    10081 agttcttgga tttactaaag aacaagcaca agaacagttc ggcttcttac tagatgcatt
    10141 taaatatggt gcaccaccac atggcggtat tgcattagga ttagaccgat tagtcatgtt
    10201 attgactaat agaacaaact tgagagatac aatcgcattc cctaaaacag catctgctac
    10261 atgtttatta acgaatgcgc ctggtgaagt ttctgataaa caattagaag aactttcttt
    10321 gcgaattcgt cactaaattt taaaaaatca ataaactttg gtttgttata atttcattaa
    10381 ttttaattat gtggtaatat aacatcataa gatagtcatc tgagttgttc gtaagtttgc
    10441 tttttaattt gggcctaaca ctctttgatc aagggagccc aatgggtttt cttgcagcgt
    10501 acacgcctta tatgaaggac gtacaaaaca agaaacaggg cacccacctg tatataacag
    10561 gccgaatgat caagctatta taactacggc aatacggact ctatcgatac gcaagacttt
    10621 gtcttgcgta tttttatgcg tttctttaag tttttaataa agaattagtt gggttttata
    10681 gcgtttaata aatgtttcct cgttgaattt tgggaaaata atcaaagtga taatgctaaa
    10741 tataaaattt taagttacta tgtacttatg tataaatcag tgaaagaggt aaaataatga
    10801 aacatcaatt ttcaagaaat gaactagcga ttggacaaca aggtttagat ttattgaagc
    10861 aacaaactgt tgtcatactt ggcgttggag gtgttggttc atttgctgct gaagcattag
    10921 caagaacgaa tattggtcat attatattaa tagataaaga tgatgttgat attacaaatg
    10981 taaacagaca attacacgct ttaactacaa cggtaggaca aagtaaagtt tctttgatgg
    11041 aagaacgtat taaattaatt aatccagatt gtaaagtcac gcccttacat atgttttata
    11101 cagaagagac atatgaagaa attttcgata actacgatat agattatttt gtagatgcaa
    11161 gtgatacaat aatgtacaaa gtacacttaa tgaaagagtg tcttgaccga gggattaaag
    11221 tgatttccag tatgggtgct gcaaataaaa cagatccaac acgttttaca atttcagata
    11281 tctctaaaac acataccgat ccaatggcca aaattattcg tcaaaaattg aaaaaactag
    11341 gaattcgtaa agggattcca gttgtatttt cagatgaaag tccaattgtc ataagagaag
    11401 atgtaaaaga tatagttgga gataaaaatg ctatcaatcg aaaaggacaa atgccacctt
    11461 cttcaaatgc ctttgtgcca agtgttgttg gattaatttg tgcaagttat gtggtgaatg
    11521 acgtattaaa agatattcca gttcgtcgca ttaaagacaa agggcaataa ttcattttga
    11581 aagggataat tttcaacgta aggcaagtgt aaccacacca taaaactaaa actgactagt
    11641 tcgcaagcat agtagaatat gcctcgtgta ctagtcagtt ttgatttgat tatagctaaa
    11701 atatcaaagg taatcgattt aatcttattt ttacggcctt tgtttaagta agttgttata
    11761 tatttctttg agttgttgtt cacttttaga tgtcgttttt ggttcgtaat aaattttgtt
    11821 ttttagttta tcaggtaaat attgctgtga aacatagcca ttaacatatt ggtgtggata
    11881 tttgtaacca atagatcggc ctagatcttt agcaccttga taatgtccat cttttaaatg
    11941 gtttggaatt tggcccacat gaccgtttct aatatcggac aatgcactat caatggcact
    12001 cattgctgaa tttgacttag gtgataagca tagttcgatt actgcttggc ttagtggaat
    12061 tctagcttct ggtaaaccta gacgttctgc tgattcaata gcagcaagtg ttctctgacc
    12121 agcattaggt gaggctaagc ctatatcctc atagctaatt acaagtaatc gtcgaactat
    12181 tgtaggtaaa tctccagctt caattaatcg tgctaaataa tgtaaagcgg cattgacgtc
    12241 gctaccacgg atagattttt ggaaagcgct cataacatcg taatgcatgt caccatcctt
    12301 gtcacttaca aatgcacctt tttgtaaaca gtctttagca tcttgcaatg taacatgtcg
    12361 ataaccgtct ttgtcattat ctgcgcttaa tacagctaat tccaatgcat ttaacgcact
    12421 acgaacatca ccttggcttt gtgtagaaaa gtaggtcatg gcatcttcat caattttggg
    12481 ttgatatgtt ttcaaaccat tctcatcatc ttctattgca cgagttaacg cttggcgcac
    12541 atcttcgtca tttaaaggat ataactcgaa aatttgcgct cttgaacgaa tcgctggatt
    12601 gatagcatga taaggatttg aagttgtagc accgatcaag acgattttgc cattttctaa
    12661 atgaggtaat aaaaagtctt gtttagcttt atctagtcga tgtatttcat ctaataacaa
    12721 gataacttga ccagacattt tagcttcttc aacaacaagt tgcatatctt ttttagtgtt
    12781 agttacagca ttcaattgtc tgaatttata ttgcgtactg cccgaaattg ctttggcaat
    12841 acttgttttg cctataccag gtggaccata aaaaatcatt gaagttaatt tttttgtatc
    12901 aaccattctt ctgataatgc ctcttggtcc aactaaatgt tgttgggaaa tgatttcatc
    12961 tatatttttt gggcgcattc tcgatgctaa tggttctgta ctcacatttg tcacaccttt
    13021 cttatactat cttaactcaa aaaatgctaa aatgggaata tcaatattcg aattaagtga
    13081 ggttatacaa tgaaaatttc tactaaaggg agatatggac ttacattgat gatttctctt
    13141 gctaaaaaag aggggcaagg atgtatatca ttaaagtcaa ttgctgaaga aaataatttg
    13201 agtgatttat atttagaaca gcttgtaggt cctttaagaa atgcggggtt aattcgaagt
    13261 gtacgcggtg ctaaaggtgg ataccaatta agagtgccag cggaagaaat ctcagcaggg
    13321 gatattataa gactgttaga aggtccaatt acatttgttg aaagtattga atcagaacca
    13381 cctgcgcaaa aacaactatg gattcgcatg agagatgcag tgagagatgt tttagataat
    13441 acaacattga aatatttagc ggaatatgta gatacaagtg aagatttaga cggatacatg
    13501 ttttatattt aatcgtataa atactatact ataacataaa aacttcatat tataatgttt
    13561 agcgaacctc cttagtggta tataaatata tacatccaag gaggtttcac tatggcagac
    13621 gaaagtaagt tcgatcaatt taaaggaaat gttaaagaaa cagtaggtaa cgttactgat
    13681 aacaaagaat tagaaaaaga aggtcagcaa gataaagtga ttggtaaagc aaaagaagtt
    13741 gttgaaaatg ctaaaaacaa aataactgat gcaattgata aacttaaaaa ataagttcaa
    13801 ttaaactaat caaatataag aggagcgatt aatatgagtt ttatggataa agctaaagac
    13861 gcagtagaaa aatttaaaaa tagcgataat gaacaagtta aaaatgtaaa agataagata
    13921 aatgaatata caggatcgaa taacgaagag aaaaaagaaa atgaagataa agagaaataa
    13981 atttctttaa attttggata tgcttttcaa tattttgaaa gcgccccatc aaataaacac
    14041 ttacacagtg taaagttgaa ggggcgcttt catatttgca ttagaatttt aagtgaattt
    14101 gaatcattac taaaataaat gattgaacaa taaagacatc tttcattcaa aatgctgtta
    14161 ctgtatattt ttattaatat tatggataca tactttcact tagtttattt atcacattat
    14221 aaagtgtttt tttcatttat ctgatttata acattcttga accgacgata agagtctaat
    14281 tgcatatctt tatcataaat ataacttatt gccataattt cgttgacttc accataagtt
    14341 tccataaaat cttgaatttt ttgttgaaca gtattttctg aacctattaa tgatattttc
    14401 tgtctttcca tagccatcgc gtattctctc ggcgttaata tattttgtag ttcatgtgtt
    14461 ggcggttgaa cgggctgcat tctgccacga gtgatactaa ccattacttg tgccatagat
    14521 gaagctaaat attgtgcttc gtcatcattt tcagcaacga ttgtatttaa acatacaata
    14581 acataaggtt cgtctaatac atcagaaggt tcaaataacg ttttgtaaat ttcgatagct
    14641 tctttcattt gttgaggtgc aaaatgtcca gcgaacacat atggaagccc tttgcgagca
    14701 gctaaatgtg cagaatctgt tgaagaacca agaatgtata aaggcacatt tttacctact
    14761 gctggataag cacgaacata tgcttgttgg tgagcagggc cgaaatattg ttgtaataat
    14821 gaaacctctt ctggaaattt ataaacacca tcatgttgat ctcgtcttaa tgcacttgcg
    14881 gtcatcatat ctgttccagg tgcacgtcct aatcctaaat cgacacgatt tggaaataat
    14941 gttgccatcg tgccaaattg ttccgcaacg attaatggag catgattagg taacatgatg
    15001 cctccagaac ctacacgtat gtgtttcgta tgttctaacg tatgttgaat taataaagca
    15061 gttgctgaac ttactaggtt gggagcgtta tggtgttcag caatccaata tctttcatat
    15121 gataattcgt ctaaatgttg tgcgagatta accatatcat taattgctgt ttgttcatct
    15181 tcaccttctc gaatagggac aaggtttaat gctgaatatt taatcgccat ttttatatcg
    15241 tccttccttt tttatgatat aagaagtata ccaatcgaat aaccagataa atattaaatt
    15301 gctcataacc aaaataatag tacgttacat tttacaaata aaaaaatatc tgcaaatact
    15361 aaaatttata aaaaagacaa gaataaagcg ataaacttaa aaaagcctat cgaaaagcat
    15421 gtgtagaaaa tggtaaaata taattaaaaa cattataaat aaagttaaac agaaaagtag
    15481 aaaaatagta tgtaaggtgc tattattgga acattgataa aattgtgagg agtgtccaaa
    15541 catggaaatt tatgcagatt atgctgcgac cacaccagta aaacctgaag tagtagatgc
    15601 gatgatgacg atttacaatt cgcattatgg taatccatca tcaatacatg ctaagggaag
    15661 agatgcgcgt aaatatttag atgagtcaag acgtcaaatt gcacaattac ttggtgcaga
    15721 tacacatgaa attatattta cgagtggcgc aacagaatcg aataatacgg caattaaagg
    15781 catagtaaaa gcaaatgaac aattgggtaa tcacattatc acatcgaaga ttgaacatca
    15841 ttctgtgtta catgtttttg aacaattaga gcgagaaggt tttgatgtaa catatctaga
    15901 tgttgatgat acaggtgcta ttgatttaga tcaacttgaa gaaacaatta cagataagac
    15961 gattttagta tctattatgt ttgtaaataa tgaagttggc acagtgcaac aaatttatga
    16021 tattcaagat attattgctg agacaaatgc atatttccat gttgatgcgg ttcaagcaat
    16081 tggacatctt gatgttaagt ttgacgaatt tgagatcgac gcaatgagta ttactgctca
    16141 taagtttggc ggaccaaaag gtgtcggtgc attactagtt aaagaccatg ttacactaga
    16201 ttatcctcaa cttggcggtg aacaagaatt gaaacgccgt gcaggcactg aaaatcttgc
    16261 gcaaattgtt gggatggcta aagcattaca attagcagaa aagaatcgag acgataacaa
    16321 tattcattta atgaatttaa aagaacaatt tttagttaaa ttacaagaaa gagcgattcc
    16381 atttgaatta aatggttcaa tgacggatgc tacaggccat attgtaaatc tatattttcc
    16441 gtttgttgaa gttgaaacga tgttaacatt gttggatatg gcacaaatct atgtgtcgtc
    16501 tggatctgca tgtacagcag gctctacaca accgtcgcat gttttagatg caatgttcga
    16561 agatgaggag cgatcaaatc attcgattcg atttagtttt aacgaattga ctactgaaaa
    16621 tgaaattaat gcaattgtag ctgaaattca taaaatatat tttaaattta aggaggagtc
    16681 ataattgtca aataaagata tacgtgttgt cgttggtatg tcaggcggtg tagatagttc
    16741 tgtaacagcc cacgtcttaa aagaacaagg ttatgatgtc attggcatat ttatgaaaaa
    16801 ctgggatgac actgacgaaa atggcgtatg tactgcaact gaagattaca acgatgttat
    16861 tgaagtgtgt aatcaaattg gcattccgta ttacgctgtt aattttgaaa aagaatattg
    16921 ggataaagtc tttacgtatt tcttagatga atacaaaaaa ggtcgtactc caaatccaga
    16981 cgttatgtgt aataaagaaa ttaagtttaa agccttttta gatcatgcga tgaatttagg
    17041 tgcagattat gtagcaacag gacattacgc acgcatacat cgtcatgaag atggtcatgt
    17101 tgaaatgtta cgtggtgtag ataataataa agatcaaaca tacttcttga atcaattatc
    17161 tcaacaacaa ctttcaaaag tgatgttccc aattggcgac atcgaaaaga gtgaagtgcg
    17221 tcgaattgct gaagaacaag gacttgttac tgctaagaaa aaagattcta caggcatttg
    17281 ttttatcggc gaaaaaaact ttaaaacatt tttatcacaa tatttacctg cacaaccggg
    17341 tgatatgata acacttgatg gtaagaaaat gggtaaacat agtggtttga tgtattacac
    17401 aataggacaa agacatggat taggtatagg tggagatggc gatccttggt ttgttgtcgg
    17461 taaaaaccta aaagataatg ttttatatgt agaacaagga ttccatcacg atgcattata
    17521 cagtgattac ttaattgctt cagactattc atttgtaaat ccagaagata atgacttaga
    17581 tcaaggtttt gaatgtacag ctaaatttag atatcgccaa aaagatacga aagtttttgt
    17641 gaaacgtgaa aacgaccatg cactacgtgt tacttttgct gagccagtaa gagcaatcac
    17701 acctggacaa gcagttgttt tttatcaagg tgatgtgtgt cttggtggtg caacaattga
    17761 cgatgtgttc aaaaatgaag gtcaattaaa ttatgttgta taaacaatgg caacaataaa
    17821 ttacttattt gaagtttcaa cgttgaaaat gacgaaagac agtttttgat gagaataatt
    17881 catgaggata gagtctggga catcacaatg tcctaggctc tacaatgtta tattggcggg
    17941 accacaacat agagaatttc gtaaagaaat tctacaggca atgccagttg gggataacga
    18001 atttaatttt gttaaaatat catttctgtc ccactcccta tgcatgaatc taattatgta
    18061 ttcttatttt taagtacata atagtggtgg ctaatgtgga agaaccatta cataataaac
    18121 cgttaatggt tcttaagcat ttctattcca ttcccgcttt ttcatgaatg aagatgatat
    18181 tagattatat tttattcgtt gttaagtgat tcgagacata caatttatca agatgttata
    18241 attgatgaga aatgaggttc gtaaatgata gatcaacaaa caatttatca atacatacaa
    18301 aatggaaaaa tagaagaagc gttacaagca ttgttcggaa atatcgaaga aaatcctaca
    18361 attattgaaa attatattaa tgctggtatc gtacttgctg atgcgaatga gattgaaaag
    18421 gcagagcgtt ttttccaaaa agctttaaca atagatccga agaatggcgt cgtatttttt
    18481 aatctagcaa atgtatatta taatcagcaa cgttatcaag aagctattaa attatatcaa
    18541 caagcattac aaacagagat tgaacaagtt gattgtaatt atatgatcgg tatggcgttt
    18601 aatcagttag aatcatttaa gctggcattg ccgtatttaa tgactgctgc ggaactagat
    18661 aaagacaaag atgcagaagt tcaatttcaa tatggtcttg tattatgtca attagaaatg
    18721 tttaatgaag ccataactca acttaaacat gtattaacga ttgataaaaa tcatgttgat
    18781 gcaagataca atttgggctt agcgttattt atgaaaaatg aagatattga tgaagcaata
    18841 actcatttta aagaagctgt gactatcgac cctaaacact tattaagtca gcatgcgctg
    18901 aaaacattca ctaaaatgaa agaggaggag taacatgtca gaccctacac tatttgatta
    18961 ttcaatgatc aaaggtactg ttgaagcgat attgtttcaa aacagtgata atttttatac
    19021 agtgcttaaa gtagatacta ttgaaacaaa tgaagacttt gatacaatgc caactgttgt
    19081 agggtttctt ccgaatattg ttgaaggcga tgtctacaca tttaaagggc aagttgttga
    19141 tcatccacgt tatggtaaac aattaaaagc agagactttt gaaaaagaaa tgccacaaac
    19201 gaaagaagca attataagtt atttatctag tgatttgttt aaaggtgtag gtaaaaagac
    19261 agctcaaaat attgttaata cattaggtga caatgcgata aatgatatat tagatgacca
    19321 ttcagtgcta gaaaaagttt cgggattatc taaaaagaaa cagaaacaaa ttgcagaaca
    19381 aatttcagca aatcaagaat ctgaaaaaat aatgattcgt ttacatgatt tagggtttgg
    19441 tcctaaactt tcaatggcaa tttatcagtt ttatctcggc gatacactga ctattttaga
    19501 tcgaaatcca tatcaattga tttatgatat taaaggtatt ggttttaata aagcagatca
    19561 acttgctaga aatattggta tcgcttataa cgataatgaa cgattaaaag ctgcgttgct
    19621 ctatacgtta gaagaagaat gtattaaaca gggacataca tatttgccta tcaatgttgt
    19681 tatagattta acggttgatg tattaaatta tcaagatgaa gaggtcatcg aacctgaaaa
    19741 attagacgaa atgttgcaat acttaaatga ggaaaaacga ctaattattg acaatgaaca
    19801 agttgcaatt ccaagtttgt attattctga aatcaaaagt gttcaaaact tattcagaat
    19861 aaagacgcat acaaataaac ttacagaaat tgaacagtca gatttacaaa tgcatattgg
    19921 tgaaatagaa gatgcgaatc aagtgaacta tgcagcttca caaaaagaag ctttgcaaac
    19981 ggctatcaat tctaaggtga tgctattaac cggtggaccg ggaacaggaa aaacgacagt
    20041 aattaaaggt attgttgaat tatatgctga gattcatggc ttatcattag attatgatga
    20101 ttatgtcaat gatgattatc cagttgtatt agcagcgcca acaggaagag cgtctaagag
    20161 actacaagag tcaactggat tagaagcaat gacgattcat cgtttaatag gttggaatca
    20221 agacacaaag ccagaggata tattagaaaa tgaaataaac gcacgactca taatcattga
    20281 tgagatgtct atggtagata cttggttgtt ccaccaattt ttaagtgcag ttcctttaga
    20341 tgcacaattg atatttgtag gtgatgagga ccaattgcct tctgtaggtc ctggtcaagt
    20401 atttaaagat ttaattgaat cgaaagctat accacgagta aatctgactg aagtatatcg
    20461 tcaacaagat ggttcaagca ttatagaatt agcacatcga atgaagttgg gtcagaaaat
    20521 tgatattaca cagcgttttc atgatagaag ttttattaac tgtcaggcaa accaaatacc
    20581 aacagttgtt gagaaggtag ttactagtgc tgttaataaa gggtatacta tggctgatat
    20641 tcaagtgctt gcaccaatgt ataaaggaaa tgccggtatt aaacgtttaa atcaagtttt
    20701 acaagatatt ttaaacccta aaaagaaaga cacacgagaa attgagtttg gtgatgtagt
    20761 ctttagaaaa ggtgacaaag tattacaact tgttaatagg ccaaatgata acatattcaa
    20821 tggtgacata ggagttattg ttggtatttt ttgggcgaaa gaaaatgccc ttaataaaga
    20881 tgtacttgtt gtggattttg aaggtaatga aattacattt acgaaacaag atatgatgga
    20941 attaacacat gcttattgta catcaatcca taaatcacaa ggttcagaat ttcctattgt
    21001 tatcatgcct attgttaaac agtattttag aatgttacaa agaccgatat tatatactgg
    21061 tttaactaga gcgaaaacga gtttagtttt acttggtgat ccggaagcat ttgatattgg
    21121 attgaaaaca aatggtcaag cgcgtttaac acaattatgt acattgttga aaaattattt
    21181 taattcagaa gatgaagaaa tgctggaaaa cacagcaact aatgatacag gagcttcaca
    21241 aacgacaata gatgatcaag tagaagcgcc aatgtcatcg aatgatagtg aagaagttat
    21301 gtctgattca acaaaaacag atacaaatgt attaacggaa gctacaatgt ttaaaattga
    21361 cccaatgatt aatatgggag aaatcacgcc gtatgacttt atagaacgtt gacaacaagc
    21421 gtaaatgtaa ctaaaataga attaaattcg tataaagatg agtagttaat gatttgttta
    21481 tcagagatgt actggttggt gaaaagtaca acaaacatta gtgaacgcta ctttatgcac
    21541 aactgtatag tcgaattaaa gtgataaatg tgttgaattg catttataac tagggtggta
    21601 ccgcgataac gttcgtccct tttgaggatg ggcgtttttt attttttaat aataaaaaat
    21661 gatattgatt tatactagtt ttgcaaatcg actatctgtg tcatcaattt ttatggaatg
    21721 gtaatttaaa aacagtaaat aggatgtgta aatgatgaaa aagttaaaag cgagtgaaat
    21781 tagacaaaaa tatctagatt tctttgttga aaaaggacat atggttgaac cttctgcacc
    21841 attagtgcca attgatgatg atacattatt atggattaat tcaggtgtag caacattaaa
    21901 gaaatatttt gatggacgtg aaacacctaa aaagccaaga attgtaaact ctcaaaaagc
    21961 tattcgtaca aatgatattg aaaatgttgg tttcacagcg cgtcaccata cattctttga
    22021 aatgttaggt aacttctcaa ttggtgatta ttttaaacaa gaagcgattg aatttgcttg
    22081 ggaattttta acgagtgata aatggatggg tatggagcca gataaattgt acgttacgat
    22141 tcatccggaa gatatggaag catacaacat ttggcataaa gatattgggc ttgaagaaag
    22201 tcgtattatt cgcattgaag gtaacttctg ggatattggt gaagggcctt caggaccgaa
    22261 cactgagatt ttctatgatc gcggagaagc atatggacaa gacgatccgg cagaagaaat
    22321 gtatccaggt ggagaaaatg aacgctatct tgaagtatgg aacttagtat ttagtgaatt
    22381 caatcataat aaagatcata gttacacacc attacctaat aaaaatattg atactggcat
    22441 ggggcttgag cgtatggcct cagtttctca aaatgtacgt actaactatg aaacagattt
    22501 atttatgcct ataatgaatg aaatcgaaaa agtatcaggt aaacaatatt tagtaaacaa
    22561 cgaacaagat gtggcattta aagtaattgc tgaccacatt cgtacgattg catttgcaat
    22621 ttctgatggt gcattacctg ccaatgaagg tagagggtat gtattacgtc gattgttacg
    22681 tcgtgccgtt cgttttagtc aaacgttagg aatcaatgag ccatttatgt acaaacttgt
    22741 tgatattgtt gcagacatta tggaaccata ttatccaaat gttaaggaaa aagcagattt
    22801 cattaagcgt gttataaagt ctgaagaaga acgattccat gaaacattag aagatggttt
    22861 agcgatttta aatgaattaa ttaaaaaagc taaagcgaca acaaatgaaa ttaatgggaa
    22921 agatgcattt aaattgtatg atacgtatgg gttcccaatt gaattaactg aagaaatagc
    22981 agtgcaagca ggattgaaag ttgatatgac aacattcgag tcagaaatgc aacaacaacg
    23041 tgatcgtgca cgtcaagcac gtcaaaattc tcaatcaatg caagttcaaa gtgaagtatt
    23101 gaaaaatatt acatctgcaa gtacttttgt tggttatgat actgcgacag ctcaaacaac
    23161 actaacacac ttgatataca atggtgaaga agtttcacaa gttgaagcgg gtgaaacagt
    23221 atacttcatg ttaacggaaa caccatttta tgcaatcagt ggtggacaag ttgcggatac
    23281 aggtattgtt tataatgaca attttgaaat tgctgttagt gaagtaacca aagcaccaaa
    23341 tggtcaaaac ttgcataaag gagtagtaca atttggccaa gtaaatgttg gcgctacagt
    23401 gtctgctgaa gtgaaccaaa atgatcgacg tgacattcaa aagaaccata gtgcaacaca
    23461 tttattacat gcagcgttga aatcagtact gggtgatcat gttaaccaag ctggttcact
    23521 agtagaagca gatcgtttac gttttgattt ctctcatttt ggtccaatga ctaatgatga
    23581 aattgatcaa gttgaacgct tagtaaatga agaaatttgg aaaggtattg acgttaacat
    23641 tcaagaaatg gatattgctt cagctaaaga aatgggcgca atggcattat tcggtgaaaa
    23701 atatggtgat gttgtgcgtg tagtaaatat ggcaccattt tcaattgaat tatgtggtgg
    23761 tattcatgtc cgcaatactt ctgaaattgg cttattcaaa atagtaagtg agtcaggtac
    23821 aggagctggt gtgcgtcgta ttgaagcatt aacaggtaaa gcagctttct tatatttaga
    23881 agatattcaa gagaaattta atacgatgaa atcacagctg aaagtgaaat ctgatgatca
    23941 agtagtcgat aagttaacac aattacaaga tgaagaaaaa gcattattaa aacaattaga
    24001 gcaacgtgac aaagaaatca catcacttaa aatgggtaat attgaagatc aagttgaaga
    24061 aatcaatggc tataaagtat tggttactga agtggatgta ccaaatgcga aagcaattcg
    24121 ctcgacaatg gacgatttta aatctaaact acaagataca attatcattc ttgcaagtaa
    24181 tgttgatgat aaagtatcga tggttgcaac tgtccctaaa tctttaacaa ataacgttaa
    24241 agccggtgat cttatcaaac aaatggcacc aatcgttggt ggtaaaggtg gcggtcgtcc
    24301 agatatggct caaggtggcg gtacacaacc tgaaaatatc tcaaaatcat taagctttat
    24361 taaagattac attaaaaatc tataatttaa agccataata ttgtatgatg atagtgagtt
    24421 atatttgtaa ttaaaggagt gtcgcaaatg gaaaactttg ataaaacaat gaaattcgac
    24481 tatgaagaac ttccaacgca agatgtaaga gatgttttaa ataatgttta tcgaacatta
    24541 gatgaacgag gatataatgc cgtaaaccaa attgtaggtt atttattatc aggtgaccct
    24601 gcgtatattc cacgccaaaa tgaagcaaga aatcaaattc gtcatattga tagagatgtt
    24661 attatggaag agcttgtttc ttactattta aaagagcaaa ataaataatt tatgttacaa
    24721 cataaaattt taggactcga tgtcggtagt agaacggtag gaattgcaat tagtgatata
    24781 atgggttgga cggcacaagg attagacaca ctccgaatca atgaagaaaa taatgaatta
    24841 ggtattgacc aattagtaga cattattaaa aaacataatg tgggtacagt cgtaatagga
    24901 ctacctaaaa acatgaataa ttcaatagga tttcgaggcg aagcttcgtt aacatataaa
    24961 gaaaaattat tagaagctta tccttctatt gagattgtga tgtgggatga aagattaagc
    25021 acaatggctg ctgaacgatc attattagaa gcagatgttt caagacaaaa aagaaaacaa
    25081 gtgattgata aaatggcagc ggtatttatt ttacaaggct atttagattc actacattaa
    25141 aaggagattt tactatgact gaacataatc atgattcaca actagaaatt aataacgaag
    25201 aagaattatt aactttattc gatgaagagg gaaatgaagt tttataccga aaagttttag
    25261 aattttatca tcctgaattc aaaaaagagt atgttatctt agctgaagaa ggtgctcaat
    25321 cagatgaaga cgatatgatt gagcttgtac caatgatcaa tgaaccagat gagtcaggtg
    25381 acggtggtaa gttagtacca atcgaaactg atgaagaatg ggacatgatt gaagaagttg
    25441 taaatactga aatggaagaa taattaaaaa gattttactc ttgctaacct taaagatggg
    25501 gaggcaagag tattttttaa gtcaagcaat gtataaataa ttaacgctta taattttatt
    25561 gaaaatatgg taaaatatct aaagttaaat tttatatgaa tgattcgctt ctataaataa
    25621 aatagctttg cgtctaacac gaaatcagtc atttaattgg ttggcaaaat tataatcaat
    25681 tgtgaaggct gatttatttt attgtcataa tcatattgac ttattttaca taaaggaagt
    25741 ttaaaacatg gatgacctaa ataaaaaata tttaatagat ttacatcaac atcaaaatag
    25801 ttcaatcgaa gttttgcgtg aatttgccga ggtaaatgaa gtgccaattg tagatcgttt
    25861 aacattagat ttaattaagc aattaattcg tatgaataat gttaaaaata
//
LOCUS       DAMQWL010000027        25702 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.027, whole genome shotgun sequence.
ACCESSION   DAMQWL010000027 DAMQWL010000000
VERSION     DAMQWL010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 25702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25702
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.027"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            98..1384
                     /gene="rseP"
                     /locus_tag="PF788_001028"
     CDS             98..1384
                     /gene="rseP"
                     /locus_tag="PF788_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000121122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDG6303298.1"
                     /translation="MSYLVTIIAFIIVFGVLVTVHEYGHMFFAKRAGIMCPEFAIGMG
                     PKIFSFRKNETLYTIRLLPVGGYVRMAGDGLEEPPVEPGMNVKIKLNEENEITHIILD
                     DHHKFQQIEAIEVKKCDFKDDLFIEGITAYDNERHHFKIARKSFFVENGSLVQIAPRD
                     RQFAHKKPWPKFLTLFAGPLFNFILALVLFIGLAYYQGTPTSTVEQVADKYPAQQAGL
                     QKGDKIVQIGKYKISEFDDVDKALDKVKDNKTTVKFERDGKTKSVELTPKKTEKKLTK
                     VSSETKYVLGFQPASEHTLFKPIVFGFKSFLIGSTYIFTAVVGMLASIFTGGFSFDML
                     NGPVGIYHNVDSVVKAGIISLIGYTALLSVNLGIMNLIPIPALDGGRILFVIYEAIFR
                     KPVNKKAETTIIAIGAIFMVVIMILVTWNDIRRYFL"
     gene            1404..3107
                     /locus_tag="PF788_001029"
     CDS             1404..3107
                     /locus_tag="PF788_001029"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDG6303299.1"
                     /translation="MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLP
                     LATRVLNNITAIVRQEMERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGR
                     QFALGPTHEELVTSIVRNELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDA
                     YSFHADEASLDQTYQDMYQAYSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGE
                     DTIVYSKESDYAANIEKAEVVYEPNHKHTTVQPLEKIETPNVKTAQELADFLGRPVDE
                     IVKTMIFKVDGEYIMVLVRGHHEINDIKLKSYFGTDNIELATQDEIVNLVGANPGSLG
                     PVIDKEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKL
                     SDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSA
                     IVEQNHDDNGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTKFDVLYDDRQE
                     RAGVKFNDADLIGLPLRIVVGKRASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNL
                     K"
     gene            3371..7681
                     /locus_tag="PF788_001030"
     CDS             3371..7681
                     /locus_tag="PF788_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDG6303300.1"
                     /translation="MTEQQKFKVLADQIKISNQLDAEILNSGELTRIDVSNKNRTWEF
                     HITLPQFLAHEDYLLFINAIEQEFKDIANVTCRFTVTNGTNQDEHAIKYFGHCIDQTA
                     LSPKVKGQLKQKKLIMSGKVLKVMVSNDIERNHFDKACNGSLIKAFRNCGFDIDKIIF
                     ETNDNDQEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGK
                     PIQIENIKPIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMFT
                     RKNKDDLEHFKALSVGKWVRAQGRIEEDTFIRDLVMMMSDIEEIKKATKKDKAEEKRV
                     EFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMI
                     YGMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEI
                     IDKFERFSNPHERLSETIINLTHITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHNASF
                     DMGFIDTGYERLGFGPSTNGVIDTLELSRTINTEYGKHGLNFLAKKYGVELTQHHRAI
                     YDTEATAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKN
                     LFKIVSASLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFTAVMQKDQSQVEKIA
                     KYYDFIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFE
                     HDGIARKILIASQPGNPLNRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELA
                     DRIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSIIG
                     NGFAVIYLISQRLVKKSLDDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYICPNCKT
                     SEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEY
                     QPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVKGC
                     TGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQNSAWMTTHFDFHSIHDNVLKLD
                     ILGHDDPTMIRMLQDLSGIDPKTIPVDDKEVMQIFSTPESLGVTEDEILCKTGTFGVP
                     EFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIKTGICDLSSVIGCRD
                     DIMVYLMYAGLEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKIKYMFP
                     KAHAAAYVLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYS
                     RYMDLGKKEKDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPG
                     LGENVAKRIVEARDDGPFLSKEDLNKKAGLSQKIIEYLDELGSLPNLPDKAQLSIFDM
                     "
     gene            7971..8438
                     /gene="rimP"
                     /locus_tag="PF788_001031"
     CDS             7971..8438
                     /gene="rimP"
                     /locus_tag="PF788_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDG6303301.1"
                     /translation="MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKE
                     GGVDLNDCTLASEKISEAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFV
                     SLYVPIEGEKEWLGILQEVNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI"
     gene            8459..9634
                     /gene="nusA"
                     /locus_tag="PF788_001032"
     CDS             8459..9634
                     /gene="nusA"
                     /locus_tag="PF788_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDG6303302.1"
                     /translation="MSSNELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSAR
                     NVRVELNMDQGTFKVIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKD
                     FGRVGAQAAKQAVMQRLRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEA
                     VLSEAERSPNEKYIPNERIKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYD
                     GTVIVKSVAREAGDRSKISVFSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQW
                     NEDPKVFVKNALSPSQVLEVIVDETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGW
                     KIDIKSETDAREAGIYPVVEAEKVTEEDVALEDADTTESTEEVNDVSVETNVEKESE"
     gene            9655..9939
                     /locus_tag="PF788_001033"
     CDS             9655..9939
                     /locus_tag="PF788_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HDG6303303.1"
                     /translation="MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQG
                     RGAYVSKDVAMVEKAQQKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK"
     gene            9936..10253
                     /locus_tag="PF788_001034"
     CDS             9936..10253
                     /locus_tag="PF788_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ family RNA-binding protein"
                     /protein_id="HDG6303304.1"
                     /translation="MSIDQILNFLGLAMRAGKVKTGESVIVNEIKKGNLKLVIVANDA
                     SDNTAKLITDKCKSYKVPFRKFGNRNELGIALGKGERVNVGITDPGFAKKLLSMIDEY
                     HKE"
     gene            10258..12375
                     /gene="infB"
                     /locus_tag="PF788_001035"
     CDS             10258..12375
                     /gene="infB"
                     /locus_tag="PF788_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDG6303305.1"
                     /translation="MSKQRIYEYAKELNLKSKEIIDELKSMNIEVSNHMQALEDDQIK
                     ALDKKFKKEQKNDNKQSTQNNHQKSNNQNQNKGQQKDNKKNQQQNNKGNKGNKKNNRN
                     NKKNNKNNKPQNQPAAPKEIPSKVTYQEGITVGEFADKLNVESSEIIKKLFLLGIVAN
                     INQSLNQETIELIADDYGVEVEEEVVINEEDLSIYFEDEKDDPEAIERPAVVTIMGHV
                     DHGKTTLLDSIRHTKVTAGEAGGITQHIGAYQIENDGKKITFLDTPGHAAFTTMRARG
                     AQVTDITILVVAADDGVMPQTIEAINHAKEAEVPIIVAVNKIDKPTSNPDRVMQELTE
                     YGLIPEDWGGETIFVPLSALSGDGIDDLLEMIGLVAEVQELKANPKNRAVGTVIEAEL
                     DKSRGPSASLLVQNGTLNVGDAIVVGNTYGRIRAMVNDLGQRIKTAGPSTPVEITGIN
                     DVPQAGDRFVVFSDEKQARRIGESRHEASIIQQRQESKNVSLDNLFEQMKQGEMKDLN
                     VIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNV
                     RPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKV
                     SKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGIT
                     IENYNDLKEGDVIEAFEMVEIKR"
     gene            12761..13111
                     /gene="rbfA"
                     /locus_tag="PF788_001036"
     CDS             12761..13111
                     /gene="rbfA"
                     /locus_tag="PF788_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDG6303306.1"
                     /translation="MSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDL
                     SQAKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGN
                     KIERMIQDLHKQDR"
     gene            13280..14197
                     /gene="truB"
                     /locus_tag="PF788_001037"
     CDS             13280..14197
                     /gene="truB"
                     /locus_tag="PF788_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDG6303307.1"
                     /translation="MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAG
                     VLPVCIGNATRVSDYVMDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDI
                     DRLLESFKGIIEQIPPMYSSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDF
                     KENECHFKIRVICGKGTYIRTLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQI
                     KELHEQDSLQNKLFPLEYGLKGLPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVF
                     IDDDSEKVLAIYMVHPTKESEIKPKKVFN"
     gene            14212..15183
                     /gene="ribF"
                     /locus_tag="PF788_001038"
     CDS             14212..15183
                     /gene="ribF"
                     /locus_tag="PF788_001038"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin biosynthesis protein RibF"
                     /protein_id="HDG6303308.1"
                     /translation="MKVIEVTHPIQSKQYITEDVAMAFGFFDGMHKGHDKVFDILNEI
                     AEARSLKKAVMTFDPHPSVVLNPKRKRTTYLTPLSDKIEKISQHDIDYCIVVNFSSRF
                     ANVSVEDFVENYIIKNNVKEVIAGFDFTFGKFGKGNMTVLQEYDAFNTTIVSKQEIEN
                     EKISTTSIRQDLINGELQKANDALGYIYSIKGTVVQGEKRGRTIGFPTANIQPSDDYL
                     LPRKGVYAVSIEIGTENKLYRGVANIGVKPTFHDPNKAEVVIEVNIFDFEDNIYGERV
                     TVNWHHFLRPEIKFDGIDPLVKQMNDDKSRAKYLLAVDFGDEVAYNI"
     gene            15298..15567
                     /gene="rpsO"
                     /locus_tag="PF788_001039"
     CDS             15298..15567
                     /gene="rpsO"
                     /locus_tag="PF788_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDG6303309.1"
                     /translation="MAISQERKNEIIKEYRVHETDTGSPEVQIAVLTAEINAVNEHLR
                     THKKDHHSRRGLLKMVGRRRHLLNYLRSKDIQRYRELIKSLGIRR"
     gene            15937..18033
                     /gene="pnp"
                     /locus_tag="PF788_001040"
     CDS             15937..18033
                     /gene="pnp"
                     /locus_tag="PF788_001040"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDG6303310.1"
                     /translation="MSQEKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLST
                     ATASKEPRDGDFFPLTVNYEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPL
                     FPKGYKHDVQIMNMVLSADPDCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGK
                     YIINPTVEEKEVSRLDLEVAGHKDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDF
                     QQQIVDHIQPVKQEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQRDENLDNLKE
                     EIVNEFIDEEDPENELLIKEVYAILNELVKEEVRRLIADEKIRPDGRKPDEIRPLDSE
                     VGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEKRFMHHYNFPNFSVG
                     ETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVLESNGSSSQASICGS
                     TLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGMEDALGDMDFKVAGTKEGITA
                     IQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRTELSAYAPKVVTMTIKP
                     DKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMINRAREIIEEITREAE
                     VGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKIGDTIEVKITE
                     IDKQGRVNASHRALEE"
     gene            18269..19942
                     /locus_tag="PF788_001041"
     CDS             18269..19942
                     /locus_tag="PF788_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002455407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDG6303311.1"
                     /translation="MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMF
                     PEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLT
                     IALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGA
                     IVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHM
                     YDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFD
                     IPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAI
                     TASANMEVIIANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQ
                     GEFKMQIAHAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIG
                     DVGNIVLRDRHLLAEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEE
                     KVREIVEAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI"
     gene            20198..22567
                     /locus_tag="PF788_001042"
     CDS             20198..22567
                     /locus_tag="PF788_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017431830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HDG6303312.1"
                     /translation="MAQAKKKSTAKKKTTSKKRTNSRKKKNDNPIRYVIAILVVVLMV
                     LGVFQLGIIGRLIDSFFNYLFGYSRYLTYILVLLATGFITYSKRIPKTRRTAGSIVLQ
                     IALLFVSQLVFHFNSGIKAEREPVLSYVYQSYQHSHFPNFGGGVLGFYLLELSVPLIS
                     LFGVCIITILLLCSSVILLTNHQHREVAKVALENIKAWFGSFNEKMSERNQEKQLKRE
                     EKARLKEEQKARQNEQPQIKDVSDFTEVPQERDIPIYGHTENESKSQSQPSRKKRVFD
                     AENSSNNIVNHHQADQQEQLTEQTHNSVESENTIEEAGEVTNVSYVVPPLTLLNQPAK
                     QKATSKAEVQRKGQVLENTLKDFGVNAKVTQIKIGPAVTQYEIQPAQGVKVSKIVNLH
                     NDIALALAAKDVRIEAPIPGRSAVGIEVPNEKISLVSLKEVLDEKFPSNNKLEVGLGR
                     DISGDPITVPLNEMPHLLVAGSTGSGKSVCINGIITSILLNAKPHEVKLMLIDPKMVE
                     LNVYNGIPHLLIPVVTNPHKAAQALEKIVAEMERRYDLFQHSSTRNIKGYNELIRKQN
                     QELDEKQPELPYIVVIVDELADLMMVAGKEVENAIQRITQMARAAGIHLIVATQRPSV
                     DVITGIIKNNIPSRIAFAVSSQTDSRTIIGTGGAEKLLGKGDMLYVGNGDSSQTRIQG
                     AFLSDQEVQDVVNYVVEQQQANYVKEMEPDAPVDKSEMKSEDALYDEAYLFVVEQQKA
                     STSLLQRQFRIGYNRASRLMDDLERNQVIGPQKGSKPRQVLIDLNNDEV"
     gene            22572..23285
                     /locus_tag="PF788_001043"
     CDS             22572..23285
                     /locus_tag="PF788_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDG6303313.1"
                     /translation="MSEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTD
                     DVYEAIQALITEQVIKDNFEEGTSVKSLPPFFYPLNELISIGQMIKNAGFECGTEYLN
                     FDEQPATMLDANLLSVEEGYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNG
                     SILSAIKEQSNHNICYADTEIEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPIL
                     YSLNYMKNSLVQFKITRKI"
     gene            23316..24581
                     /locus_tag="PF788_001044"
     CDS             23316..24581
                     /locus_tag="PF788_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDG6303314.1"
                     /translation="MSRQSQPNIHIKVSPTTKFKTTTIVFKFMAPLEYDTITARSLLS
                     KLLVRATKKWPTDKSFNNHLADLYGAYVNSTISKFKDQHVITFSLEIVNERYLRNGES
                     LFNQGLDLLQEIIWNPLIENKAFNDNFVNQEKTLLAKKIEAMVDNKAQYSFLKLLDHM
                     FENEAYKYLSTGQLEQIPHITAETLYHTYQSMINNDQCSVYVVGNVEPESVEKQIREK
                     FALKPFDKHQFQHSTHHLHDEEVDYIVEYDDVDQAKLNMGYRFPTQYGQSGYAAFVVF
                     NMMFGGDPSSVLFNEVREKQSLAYSIHSQIDGKNGYLFVLSGVSSDKYETAKDTIISE
                     FEKIKAGDFTEEKLELAKKVIISHRYESEDRPKSIIEIMHNQILLEQPQSKETFINDI
                     QKVSREDIVSVAEKAFLDTIYVLTKGGDK"
     gene            24581..>25702
                     /locus_tag="PF788_001045"
     CDS             24581..>25702
                     /locus_tag="PF788_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDG6303315.1"
                     /translation="MKERYYELIDERVFEQELENGLRLFIIPKPGFQKTFVTYTTQFG
                     SLDNQFKPLGQDQFVTVPDGVAHFLEHKLFEKEEEDLFTAFAEDNAQANAFTSFDRTS
                     YLFSATDNIENNIKRLLTMVETPYFTKETVDKEKGIIAEEIKMYQEQPGYKLMFDTLR
                     AMYQQHPIRVDIAGSVESIYDITKDDLYLCYETFYHPSNMVLFVVGDVDPEAICRIVK
                     QHEDARNKVNQPKIERGLVDEPEDVKEAFVTESMKIQSPRLMLGFKNKPLQEAPQKYV
                     QRDLEMSLFFELIFGEETDFYQNLLNEGLIDDTFGYQFVLEPTYSFSIVTSATEEPDK
                     LKKLLLDELRDKKGNFQDAEAFELLKKQFIGEFISSLNSP"
BASE COUNT         9419 a         3522 c         5013 g         7748 t
ORIGIN      
        1 ttgtgatttg tcagtatcat attataatga cttatgttac gtatacagca atcattttta
       61 aaataaaaga aatttataaa caatcgaggt gtagcgagtg agctatttag ttacaataat
      121 tgcatttatt attgtttttg gtgtactagt aactgttcat gaatatggcc atatgttttt
      181 tgcgaaaaga gcaggcatta tgtgtccaga atttgcgatc ggtatggggc caaaaatttt
      241 tagttttaga aaaaatgaaa cactttacac tattaggtta ttgcctgttg gtggatatgt
      301 tcgtatggca ggagatggct tagaagagcc accagtcgag cccggtatga acgttaaaat
      361 taaacttaat gaagaaaatg aaataacaca tatcatatta gatgatcatc ataagtttca
      421 acaaattgaa gcgatcgaag ttaaaaaatg tgattttaag gatgacttat tcatagaagg
      481 tatcactgct tatgataatg aaagacatca ttttaaaatt gctagaaagt ctttctttgt
      541 tgaaaatggt agcttagttc aaattgctcc gagagacaga caatttgcac ataaaaagcc
      601 atggccgaaa tttttaacat tatttgcggg accgttattt aactttatat tagctttagt
      661 cctatttatt ggtcttgcat attatcaagg cacgcctacg tctactgtag aacaagtcgc
      721 agataagtat ccagctcaac aagcaggatt acaaaaaggt gataagatcg tccaaattgg
      781 caaatataaa atatctgaat ttgatgatgt tgataaggcg ttagataaag ttaaagataa
      841 taagacgact gttaaatttg aacgtgatgg taaaacaaag tcagttgaat taacacctaa
      901 aaagactgaa aaaaaactga ctaaagtaag ttcagagacg aagtatgttc tcggattcca
      961 accagcgagt gaacatacac tttttaaacc aattgtattc ggatttaaaa gctttttaat
     1021 cggtagtact tatattttta cagctgtagt aggtatgttg gctagtatat ttacgggcgg
     1081 attctcattt gatatgttaa atggtccggt tggtatttat cataacgtcg actcagttgt
     1141 taaagcgggt atcattagct taattggtta cactgcgtta ttaagtgtaa acttaggtat
     1201 tatgaattta attcctattc ctgcactaga cggtggtcgt attttatttg ttatatatga
     1261 agcgattttc agaaaaccag ttaataaaaa agcggaaaca acgattattg ctattggtgc
     1321 cattttcatg gtcgttataa tgatattagt aacgtggaat gatattcgac gatatttctt
     1381 ataatttagg aggataaata attatgaagc aatccaaagt ttttatacca acgatgcgtg
     1441 acgtgccatc agaagcagaa gcacaaagtc atcgtttatt attgaaatcg ggtttgataa
     1501 aacaaagtac aagtgggatt tatagttatt taccgctagc aacacgtgtg ttaaataata
     1561 ttactgcaat tgtgcgacaa gaaatggaac gtatcgattc tgttgaaatt ttaatgccag
     1621 cgttacaaca agctgaatta tgggaagaat caggacgttg gggtgcatat ggcccagaat
     1681 taatgcgttt acaagataga catggaagac aatttgcatt aggtccaaca catgaagaat
     1741 tagttacatc aatagtaaga aatgaattga aatcatacaa acaattaccg atgacattat
     1801 tccaaattca atctaaattc cgtgatgaaa agagaccacg ttttggttta cttcgtgggc
     1861 gtgaatttat tatgaaagat gcatattcat tccatgctga cgaggcatca ttagatcaaa
     1921 cgtatcaaga tatgtatcaa gcgtatagcc gtatttttga gagagttggc attaacgcaa
     1981 gaccagtagt tgcagattca ggtgctatag gcggtagcca tacacatgaa tttatggcat
     2041 taagtgctat cggtgaggat acaatcgttt acagtaaaga aagtgattat gctgctaaca
     2101 tcgaaaaagc agaagtcgtt tacgaaccaa atcataagca tactactgtg caacctttag
     2161 aaaaaattga aacaccaaat gttaagactg cgcaagaatt ggcagacttc ttaggtagac
     2221 cagtagatga aatcgttaaa acgatgattt tcaaagttga tggcgaatat attatggttt
     2281 tagtgcgtgg ccatcatgaa attaatgaca ttaaattaaa atcttatttc ggcacagata
     2341 atattgaatt agcaacacaa gacgaaattg ttaatttagt tggtgcaaat cctggttcac
     2401 taggtcctgt aattgataaa gaaatcaaaa tttatgcaga taattttgtg caagatttaa
     2461 ataatttagt tgtcggtgct aacgaagatg gttatcactt aattaatgta aatgtaggta
     2521 gagacttcaa cgttgatgaa tatggcgatt tccgttttat tttagaaggc gaaaagttaa
     2581 gtgatggttc aggcgttgca cattttgctg aaggtattga agttggtcaa gtattcaaat
     2641 tgggtactaa gtattcagaa tcaatgaatg ctacattctt agataaccaa ggaaaagctc
     2701 aatctttaat tatgggttgt tacggaattg gaatttctag aacgctaagt gcgattgttg
     2761 aacaaaatca cgatgataat ggaattgttt ggcctaaatc agttactccg tttgatttac
     2821 atttaatttc tattaatcct aagaaagatg atcaacgaga actagcagat gcactatatg
     2881 ctgaatttaa tactaaattt gatgtgttgt acgatgatcg tcaggaacgt gcaggtgtta
     2941 aatttaatga tgccgattta attggtttac cactgcgaat tgttgttggt aaacgtgcat
     3001 cggaaggtat tgtagaagtt aaagaacgtt taacaggtga tagcgaagaa gttcacattg
     3061 atgacttaat gactgtcatt acaaataaat atgataactt aaaataatta agatcgaatg
     3121 aattataaga gtaggaaaaa gctgaaagaa atctgatgct tatgtcctgc tcttattatt
     3181 tttgatataa tgattattcg atgaaaaatg actgaagaca tagtataatt aaagataaat
     3241 ttgttttaac aatataatga ttagccaaat ataaagcatt taattttcta tcattactat
     3301 gctcacataa tctaaatatt gttcgaacac gtaaaagtaa tttctattta aggtggtaat
     3361 tgtcttggca atgacagagc aacaaaaatt taaagtgctt gctgatcaaa ttaaaatttc
     3421 aaatcaatta gatgctgaaa ttttaaattc aggtgaactg acacgtatag atgtttctaa
     3481 caaaaacaga acatgggaat ttcatattac attaccacaa ttcttagctc atgaagatta
     3541 tttattattt ataaatgcaa tagagcaaga gtttaaagat atcgccaacg ttacatgtcg
     3601 ttttacggta acaaatggca cgaatcaaga tgaacatgca attaaatact ttgggcactg
     3661 tattgaccaa acagctttat ctccaaaagt taaaggtcaa ttgaaacaga aaaagcttat
     3721 tatgtctgga aaagtattaa aagtaatggt atcaaatgac attgaacgta atcattttga
     3781 taaggcatgt aatggaagtc ttatcaaagc gtttagaaat tgtggttttg atatcgataa
     3841 aatcatattc gaaacaaatg ataatgatca agaacaaaac ttagcttctt tagaagcaca
     3901 tattcaagaa gaagacgaac aaagtgcacg attggcaaca gagaaacttg aaaaaatgaa
     3961 agctgaaaaa gcgaaacaac aagataacaa cgaaagtgct gtcgataagt gtcaaattgg
     4021 taagccgatt caaattgaaa atattaaacc aattgaatct attattgagg aagagtttaa
     4081 agttgcaata gagggtgtca tttttgatat aaacttaaaa gaacttaaaa gtggtcgcca
     4141 tatcgtagaa attaaagtga ctgactatac ggactcttta gttttaaaaa tgtttactcg
     4201 taaaaacaaa gatgatttag aacattttaa agcgctaagt gttggtaaat gggttagggc
     4261 tcaaggtcgt attgaagaag atacatttat tagagattta gttatgatga tgtctgatat
     4321 tgaagagatt aaaaaagcga caaaaaaaga taaggctgaa gaaaagcgtg tagaattcca
     4381 cttgcatact gcaatgagcc aaatggatgg tatacccaat attggtgcgt atgttaaaca
     4441 ggcagcagac tggggacatc cagccattgc ggttacagac cataatgttg tgcaagcatt
     4501 tccagatgct cacgcagcag cggaaaaaca tggcattaaa atgatatacg gtatggaagg
     4561 tatgttagtt gatgatggtg ttccgattgc atacaaacca caagatgtcg tattaaaaga
     4621 tgctacttat gttgtgttcg acgttgagac aactggttta tcaaatcagt atgataaaat
     4681 catcgagctt gcagctgtga aagttcataa cggtgaaatc atcgataagt ttgaaaggtt
     4741 tagtaatccg catgaacgat tatcggaaac gattatcaat ttgacgcata ttactgatga
     4801 tatgttagta gatgcccctg agattgaaga agtacttaca gagtttaaag aatgggttgg
     4861 cgatgcgata ttcgtagcgc ataatgcttc gtttgatatg ggcttcatcg atacgggata
     4921 tgaacgtctt gggtttggac catcaacgaa tggtgttatc gatactttag aattatctcg
     4981 tacgattaat actgaatatg gtaaacatgg tttgaatttc ttggctaaaa aatatggcgt
     5041 agaattaacg caacatcacc gtgccattta tgatacagaa gcaacagctt acattttcat
     5101 aaaaatggtt caacaaatga aagaattagg cgtattaaat cataacgaaa tcaacaaaaa
     5161 actcagtaat gaagatgcat ataaacgtgc aagacctagt catgtcacat taattgtaca
     5221 aaaccaacaa ggtcttaaaa atctatttaa aattgtaagt gcatcattgg tgaagtattt
     5281 ctaccgtaca cctcgaattc cacgttcatt gttagatgaa tatcgtgagg gattattggt
     5341 aggtacagcg tgtgatgaag gtgaattatt tacggcagtt atgcagaagg accagagtca
     5401 agttgaaaaa attgccaaat attatgattt tattgaaatt caaccaccgg cactttatca
     5461 agatttaatt gatagagagc ttattagaga tactgaaaca ttacatgaaa tttatcaacg
     5521 tttaatacat gcaggtgaca cagcgggtat acctgttatt gcgacaggaa atgcacacta
     5581 tttgtttgaa catgatggta tcgcacgtaa aattttaata gcatcacaac ccggcaatcc
     5641 acttaatcgc tcaactttac cggaagcaca ttttagaact acagatgaaa tgttaaacga
     5701 gtttcatttt ttaggtgaag aaaaagcgca tgaaattgtt gtgaaaaata caaacgaatt
     5761 agcagatcga attgaacgtg ttgttcctat taaagatgaa ttatacacac cgcgtatgga
     5821 aggtgctaac gaagaaatta gagaactaag ttatgcaaat gcgcgtaaac tgtatggtga
     5881 agacctgcct caaatcgtaa ttgatcgatt agaaaaagaa ttaaaaagta ttatcggtaa
     5941 tggatttgcg gtaatttact taatttcgca acgtttagtt aaaaaatcat tagatgatgg
     6001 atacttagtt ggttcccgtg gttcagtagg ttctagtttt gtagcgacaa tgactgagat
     6061 tactgaagta aacccgttac cgccacacta tatttgtccg aactgtaaaa cgagtgaatt
     6121 tttcaatgat ggttcagtag gatcaggatt tgatttacct gataagacgt gtgaaacttg
     6181 tggagcgcca cttattaaag aaggacaaga tattccgttt gaaacatttt taggatttaa
     6241 gggagataaa gttcctgata tcgacttaaa ctttagtggt gaatatcaac cgaatgccca
     6301 taactacaca aaagtattat ttggtgagga taaagtattc cgtgcaggta caattggtac
     6361 tgttgctgaa aagactgctt ttggttatgt taaaggttat ttgaatgatc aaggtatcca
     6421 caaaagaggt gctgaaatag atcgactcgt taaaggatgt acaggtgtta aacgtacaac
     6481 tggacagcat ccagggggta ttattgtagt acctgattac atggatattt atgattttac
     6541 gccgatacaa tatcctgccg atgatcaaaa ttcagcatgg atgacgacac attttgattt
     6601 ccattctatt catgataatg tattaaaact tgatatactt ggacacgatg atccaacaat
     6661 gattcgtatg cttcaagatt tatcaggaat tgatccaaaa acaatacctg tagatgataa
     6721 agaagttatg cagatattta gtacacctga aagtttgggt gttactgaag atgaaatttt
     6781 atgtaaaaca ggtacatttg gggtaccaga attcggtaca ggattcgtgc gtcaaatgtt
     6841 agaagataca aagccaacaa cattttctga attagttcaa atctcaggat tatctcatgg
     6901 tacagatgtg tggttaggca atgctcaaga attaattaaa accggtatat gtgatttatc
     6961 aagtgtaatt ggttgtcgtg atgatatcat ggtttattta atgtatgctg gtttagaacc
     7021 atcaatggct tttaaaataa tggagtcagt acgtaaaggt aaaggtttaa ctgaagaaat
     7081 gattgaaacg atgaaagaaa atgaagtgcc agattggtat ttagattcat gtcttaaaat
     7141 taagtacatg ttccctaaag cccatgcagc agcatacgtt ttaatggcag tacgtatcgc
     7201 atatttcaaa gtacatcatc cactttatta ctatgcatct tactttacaa ttcgtgcgtc
     7261 agactttgat ttaatcacga tgattaaaga taaaacaagc attcgaaata ctgtaaaaga
     7321 catgtattct cgctatatgg atctaggtaa aaaagaaaaa gacgtattaa cagtcttgga
     7381 aattatgaat gaaatggcgc atcgaggtta tcgaatgcaa ccgattagtt tagaaaagag
     7441 tcaggcgttc gaatttatca ttgaaggcga tacacttatt ccgccgttca tatcagtgcc
     7501 tgggcttggc gaaaacgttg cgaaacgaat tgttgaagct cgtgacgatg gcccattttt
     7561 atcaaaagaa gatttaaaca aaaaagctgg attatctcag aaaattattg agtatttaga
     7621 tgagttaggc tcattaccga atttaccaga taaagctcaa ctttcgatat ttgatatgta
     7681 aaatgaaata atcaaggtat ttatttaatg cgtatggcgt agtcaaagaa atacaaaatt
     7741 gttgctggac acaaaattat gcccgtattt cttttcaatg tcttacgagt ctattcaaat
     7801 gtaatggtga aataaaggaa caaactttta caagaatctc tgattaatag tgaagtcatt
     7861 tgtttcaagc ataaacttat gctataatta agttgcttaa aaattagtga actcaggcag
     7921 aagagtggga gattcccgct cttttctatt tgccaaaaag ggaggcctgt atgagtaaaa
     7981 ttacagaaca agtagaagtg attgttaaac caattatgga agacttgaat tttgaacttg
     8041 tagacgttga atatgtcaaa gagggtagag atcattttct tagaatctct attgataaag
     8101 aaggtggcgt agatttaaat gattgtacgc tagcttctga aaaaataagt gaagctatgg
     8161 atgcaaatga tcctattcct gaaatgtatt atttagacgt agcgtcacct ggtgcagaac
     8221 gtccaattaa aaaagaacaa gatttccaaa atgcaataac taaacctgta tttgtttctt
     8281 tatatgtacc aattgaaggt gaaaaggaat ggttaggcat tttacaagaa gtcaataatg
     8341 aaacaattgt agtacaagtt aaaatcaaag caagaacgaa agatatagag ataccgagag
     8401 acaaaatagc aaaagcacgt cacgcagtta tgatttaacg tgatgaggag gaaaaaacgt
     8461 gtcaagtaat gaattattat tagctactga gtatttagaa aaagaaaaga agattcctag
     8521 agcagtatta attgatgcta ttgaagcagc tttaattact gcatacaaaa agaattatga
     8581 tagtgcaaga aatgtccgtg tggaattaaa tatggatcaa ggtactttca aagttatcgc
     8641 tcgtaaagat gttgttgaag aagtatttga cgacagagat gaagtggatt taagtacagc
     8701 gcttgttaaa aaccctgcat atgaaattgg tgatatatac gaagaagatg taacacctaa
     8761 agattttggt cgtgtaggtg ctcaagcagc gaaacaagca gtaatgcaac gtcttcgtga
     8821 tgctgaacgt gaaattttat ttgaagaatt tatagacaaa gaagaagaca tacttactgg
     8881 aattattgac cgtgttgacc atcgttatgt atatgtgaat ttaggtcgta tcgaagctgt
     8941 tttatctgaa gcagaaagaa gtcctaacga aaaatatatt cctaacgaac gtatcaaagt
     9001 atatgttaac aaagtggaac aaacgacaaa aggtcctcaa atctatgttt ctcgtagcca
     9061 tccaggttta ttaaaacgtt tatttgaaca agaagttcca gaaatttacg atggtactgt
     9121 aattgttaaa tcagtagcac gtgaagctgg cgatcgctct aaaattagtg tcttctctga
     9181 aaacaatgat atagatgctg ttggtgcatg tgttggtgct aaaggcgcac gtgttgaagc
     9241 tgttgttgaa gagctaggtg gtgaaaaaat cgacatcgtt caatggaatg aagatccaaa
     9301 agtatttgta aaaaatgctt taagcccttc tcaagtttta gaagttattg ttgatgaaac
     9361 aaatcaatct acagtagttg ttgttcctga ttatcaattg tcattagcga ttggtaaaag
     9421 aggacaaaac gcacgtctag ctgctaaatt aaccggctgg aaaattgata ttaaatcaga
     9481 aacagatgcg cgtgaagcgg gtatctatcc agtagttgaa gctgaaaaag taactgaaga
     9541 agatgttgct ttagaagatg ctgacacaac agaatcaacc gaagaggtaa atgatgtttc
     9601 agttgaaaca aatgtagaga aagaatctga ataataggtt ggagtgaagt atctatgaaa
     9661 aagaaaaaaa ttccgatgcg aaaatgtatt ctttcaaatg aaatgcatcc caaaaaagat
     9721 atgattcgtg ttgttgttaa taaagaaggc gaaatctttg cggatgttac tggaaagaaa
     9781 caaggccgtg gcgcatatgt ttctaaagat gttgctatgg ttgaaaaagc acaacaaaaa
     9841 gaaattttag aaaaatattt taaagcatct aaagagcaat tggatcctgt ttacaaagaa
     9901 attattagat taatttatag agaagagatc ccaaaatgag tatagatcaa atattaaact
     9961 ttttaggatt agcaatgaga gctggtaaag taaaaacagg tgaatcagtc attgttaatg
    10021 agattaaaaa aggaaatttg aagctcgtta ttgttgcaaa tgatgcgtct gataatacag
    10081 ctaaattaat tacagataaa tgtaagagtt acaaagttcc attcagaaag tttggaaatc
    10141 gaaatgaatt gggaatagca cttggaaaag gtgagcgtgt taatgtaggg attactgacc
    10201 caggctttgc taaaaagttg ctatcaatga tagatgaata tcataaggag tgattatatg
    10261 agtaaacaaa gaatttacga atatgcgaaa gaattaaatc taaagagtaa agagattata
    10321 gatgagttaa aaagcatgaa tattgaggtt tcaaatcata tgcaagcttt ggaagatgac
    10381 caaattaaag cattagataa aaagttcaaa aaagaacaaa agaacgacaa taaacaaagc
    10441 actcaaaata atcaccaaaa atcaaacaat caaaaccaaa ataaagggca acaaaaagat
    10501 aacaaaaaga atcaacaaca aaataataaa ggcaacaaag gcaataaaaa gaataataga
    10561 aataataaga aaaataacaa gaataataaa ccacaaaatc aaccagctgc tccaaaagaa
    10621 ataccatcaa aagtgacata tcaagaaggt attacagtag gcgaatttgc ggataaatta
    10681 aatgttgaat catcagaaat tatcaaaaaa ttattcttac ttggtattgt tgctaatatc
    10741 aatcaatcat taaatcaaga aacaatcgaa ttaattgccg atgattatgg cgttgaggtt
    10801 gaagaagaag ttgtgattaa tgaagaagac ttatcaatct atttcgaaga cgaaaaagat
    10861 gatccagagg caattgagag accagcagtt gtaacaatta tgggacatgt tgaccatggt
    10921 aaaacgactt tattagattc aattcgtcat acaaaagtta cagcaggtga agcaggcgga
    10981 atcactcaac atattggtgc atatcaaatt gaaaacgatg gcaaaaaaat cactttctta
    11041 gatacaccgg gacatgctgc atttacaacg atgcgtgcgc gtggtgcaca agtaacagat
    11101 attactattt tagtagtagc agctgacgat ggtgttatgc cacaaacaat tgaagcaatt
    11161 aaccatgcta aagaagcaga agtaccaatt attgttgcag taaataaaat tgataaacca
    11221 acttcaaatc ctgatcgagt tatgcaagaa ttaactgaat atggtttaat tcctgaagat
    11281 tggggcggcg aaacaatttt cgttccactt tctgcattaa gtggtgatgg tatcgacgat
    11341 ttattagaaa tgataggatt agttgcagaa gttcaagaac ttaaagcaaa tcctaaaaac
    11401 cgtgctgttg gtacagttat cgaagctgaa ttagataaat cacgtggtcc ttctgcatca
    11461 ttattagtac aaaacggtac attaaatgtt ggtgatgcga ttgtagttgg taatacttac
    11521 ggccgtatcc gtgcaatggt taatgactta ggtcaaagaa tcaaaacggc tggtccatca
    11581 acgcctgttg aaattacagg tattaatgat gtgccacaag ctggggatcg ctttgttgta
    11641 tttagtgatg aaaaacaagc tcgtcgtatt ggtgaatcaa gacacgaagc tagcattata
    11701 caacaacgtc aagaaagtaa aaatgtttca ttagataacc tgtttgaaca aatgaaacaa
    11761 ggtgaaatga aagatttaaa cgttattatt aaaggtgatg ttcaaggttc tgttgaagct
    11821 ttagctgcat cattaatgaa aattgatgtt gaaggcgtaa atgttcgtat cattcataca
    11881 gcggttggtg caattaatga gtcagacgtg acacttgcta atgcctcaaa tggtattatc
    11941 attggtttca atgttcgtcc agacagtggt gcaaaacgtg ctgcagaagc tgaaaatgtt
    12001 gatatgcgtt tacacagagt tatttataat gttatcgaag aaattgaatc agcgatgaaa
    12061 ggtttacttg atccagaatt tgaagaacaa gttatcggac aagctgaagt tcgtcaaaca
    12121 ttcaaagttt ctaaagttgg tactattgct ggatgttatg ttactgaagg taaaattacg
    12181 cgaaatgctg gtgtacgtat tattcgtgat ggtattgttc aatatgaagg cgaattagat
    12241 acacttaaac gtttcaaaga tgatgctaag gaagttgcaa aaggttatga atgtggtatt
    12301 acaattgaaa actacaatga ccttaaagaa ggcgatgtta tcgaagcatt tgaaatggtt
    12361 gaaattaagc gttaattaaa taaattacaa gctaaaagta tagttaagat tgatatgctc
    12421 cctataaata ttgcactttt taagtgtcta ctttataggg agcatatttg atactagctt
    12481 ttggtttttt attagaatag attacctatt aaaagttacg ttatatggac atgattttgt
    12541 ataaaatttt gtggtggcct agaatgattt ttaatgacaa aatataatgt cgactattat
    12601 tggaaaattt tctgttgaaa tgcctatctt acggcaaact ttatttgatt ttataggctt
    12661 aatttattaa aataacgtgt gagctaaaat aattgtttaa gcattgttac actaaaaaat
    12721 gcaaataaca attgaactta aagataaaga ggtgacaaga atgagcagta tgagagcaga
    12781 gcgtgttggt gaacaaatga agaaggaatt aatggatatc atcaacaata aagtcaaaga
    12841 tcctcgagtt ggttttatta caattacaga tgttgtttta acaaatgatt tatcgcaggc
    12901 taaagtattt ttaactgtat taggtaacga taaagaagta gaaaatacat ttaaagcact
    12961 tgataaagca aaaggcttca ttaagtctga attaggttct agaatgcgat tacgtattat
    13021 gccggaatta atgtatgaat atgatcaatc aatcgaatat ggtaataaaa ttgaacgaat
    13081 gattcaagat ttacacaaac aagatagata atttagtgtt aggtatctgg aaaatgtttg
    13141 ataatttctt aatatcggta tattaacatt aaacagttaa tacatagatg tgtagaaata
    13201 gttaacattt tccagttttt ttatgaataa atttagttga tacgctatta aaatatattt
    13261 taaaaaagaa ggtgactata tgtataatgg gatattacca gtatataaag agcgcggttt
    13321 aacaagtcat gacgttgtat tcaaattgcg taaaatatta aaaactaaaa aaataggtca
    13381 cacgggtacg cttgatcccg aagttgcagg cgtgttaccg gtatgtatag gtaatgcaac
    13441 gagagttagt gattatgtta tggatatggg caaagcttat gaagcaactg tatcgatagg
    13501 aagaagtaca acgactgaag atcaaacggg tgatacattg gaaacaaaag gtgtacactc
    13561 agcagatttt aataaggacg atattgaccg attgttagaa agttttaaag gtatcattga
    13621 acaaattccg ccgatgtact catccgtcaa agtaaatggt aaaaaattat atgaatatgc
    13681 gcgtaataat gaaacagttg aaagaccaaa gcgtaaagtt aatattaaag acattgggcg
    13741 tatatctgaa ttagatttta aagaaaatga gtgtcatttt aaaatacgcg tcatctgtgg
    13801 taaaggtaca tatattagaa cgctagcaac tgatattggt gtgaaattag gctttccggc
    13861 acatatgtcg aaattaacac gaatcgagtc tggtggattt gtgttgaaag atagccttac
    13921 attagaacaa ataaaagaac ttcatgagca ggattcattg caaaataaat tgtttccttt
    13981 agaatatgga ttaaagggtt tgccaagcat taaaattaaa gattcgcaca taaaaaaacg
    14041 tattttaaat gggcagaaat ttaataaaaa tgaatttgat aacaaaatta aagaccaaat
    14101 tgtatttatt gatgatgatt cagaaaaagt attagcaatt tatatggtac accctacaaa
    14161 agaatcagaa attaaaccta aaaaagtctt taattaaagg agatagaatt tatgaaagtc
    14221 atagaagtga cacatcctat acaatctaaa cagtatatta cagaggatgt tgcaatggca
    14281 ttcggatttt tcgatggcat gcataaaggt catgacaaag tctttgatat attaaacgaa
    14341 atagctgagg cacgcagttt aaaaaaagcg gtgatgacat ttgatccgca tccgtctgtc
    14401 gtgttgaatc ctaaaagaaa acgaacaacg tatttaacgc cactttcaga taaaatcgaa
    14461 aaaattagcc aacatgatat tgattattgt atagtggtta atttttcatc taggtttgct
    14521 aatgtgagcg tagaagattt tgttgaaaat tatataatta aaaataatgt aaaagaagtc
    14581 attgctggtt ttgattttac ttttggtaaa tttggaaaag gtaatatgac tgtacttcaa
    14641 gaatatgatg cgtttaatac gacaattgtg agtaaacaag aaattgaaaa tgaaaaaatt
    14701 tctacaactt ctattcgtca agatttaatc aatggtgagt tgcaaaaagc gaatgatgct
    14761 ttaggctata tatattctat taaaggcact gtagtgcaag gtgaaaaaag gggaagaact
    14821 attggcttcc caacagctaa cattcaacct agtgatgatt atttgttacc tcgtaaaggt
    14881 gtttatgctg ttagtattga aatcggcact gaaaataaat tatatcgagg ggtagctaac
    14941 ataggtgtaa agccaacatt tcatgatcct aacaaagcag aagttgtcat cgaagtgaat
    15001 atctttgact ttgaggataa tatttatggt gaacgagtga ccgtgaattg gcatcatttc
    15061 ttacgtcctg agattaaatt tgatggtatc gacccattag ttaaacaaat gaacgatgat
    15121 aaatcgcgtg ctaaatattt attagcagtt gattttggtg atgaagtagc ttataatatc
    15181 tagagttgcg tatagttata taaacaatct ataccacacc tttttcttag taggtcgaat
    15241 ctccaacgcc taactcggat taaggagtat tcaaacattt taaggaggaa attgattatg
    15301 gcaatttcac aagaacgtaa aaacgaaatc attaaagaat accgtgtaca cgaaactgat
    15361 actggttcac cagaagtaca aatcgctgta cttactgcag aaatcaacgc agtaaacgaa
    15421 cacttacgta cacacaaaaa agaccaccat tcacgtcgtg gattattaaa aatggtaggt
    15481 cgtcgtagac atttattaaa ctacttacgt agtaaagata ttcaacgtta ccgtgaatta
    15541 attaaatcac ttggtatccg tcgttaatct taatataacg tctttgaggt tggggcatat
    15601 ttatgttcca accttaattt atattaaaaa agctttttac aaatattaac atttattata
    15661 tgttaagcta atattgagtg aataataagg ttacaatgag ataaagatga tataagtaca
    15721 cctagagtaa taatcaagat attaaaaata aagtatgttt ttttaaaaaa tataacttat
    15781 atttatactg ataagggtgg gacgataagt ctattttgta aataatagat ggatatcccg
    15841 ctctcttttt ttccaattca atattttata actaatatta aaatacgata ataaatgata
    15901 tgatataact attagattca agagaggaga tttataatgt ctcaagaaaa gaaagttttt
    15961 aaaactgaat gggcaggaag atctttaacg attgaaacag ggcaattagc taaacaagca
    16021 aatggcgctg tattggttcg ttatggagat acagtcgtgt tatcgacggc aactgcatca
    16081 aaagaacctc gtgatggaga tttcttccca ttaacagtga actatgaaga aaaaatgtac
    16141 gctgcgggta aaattcctgg tggatttaaa aagagagaag gacgtcctgg tgacgatgca
    16201 acattaactg cgcgattaat tgatagacca attagacctt tattccctaa aggatataag
    16261 catgatgttc aaattatgaa catggtatta agtgcagatc ctgattgttc accacaaatg
    16321 gctgcaatga ttggttcatc tatggcgctt agtgtgtcgg atattccatt ccaagggcca
    16381 atcgccggtg taaatgtggg ttatattgac ggtaaatata tcattaaccc aacagtagaa
    16441 gaaaaagaag tttctcgttt agaccttgaa gtagctggtc ataaagatgc ggtaaacatg
    16501 gtagaggcag gcgctagtga gattactgaa caagaaatgt tagaggcgat tttctttggt
    16561 catgaagaga ttcaacgttt agttgatttc caacaacaaa tcgtcgacca cattcaacct
    16621 gttaaacaag aatttattcc agcagagcgt gatgaagcgc tagttgaacg tgtaaaatct
    16681 ttaaccgaag aaaaaggact taaagaaaca gttttaacat ttgataaaca acaacgagat
    16741 gaaaatcttg ataacttaaa agaagaaatc gtcaatgaat ttatcgatga agaagatcca
    16801 gagaatgaat tacttattaa agaagtttat gcaattttaa atgaattagt gaaagaagaa
    16861 gttcgacgtt taattgcaga tgaaaaaatt agaccagacg gccgtaaacc tgatgaaatc
    16921 cgtccattag attctgaagt tggtatttta cctagaacgc atggttcagg tctatttaca
    16981 cgtggtcaga ctcaagcact ttcagtttta acattaggtg ctttaggcga ttatcaatta
    17041 attgatggtt taggacctga agaagaaaaa agattcatgc atcattacaa cttcccgaat
    17101 ttttcagtag gtgaaactgg tccagtacgt gcgccaggtc gtcgtgaaat tggacatggt
    17161 gcgttaggtg aaagagcatt aaaatatatt attcctgata ctgctgattt cccatataca
    17221 attcgtattg taagtgaggt acttgaatca aatggttcat catctcaagc gtcaatttgt
    17281 ggatcaacat tagcattaat ggatgcgggc gtaccgatta aagcaccagt tgctggtatt
    17341 gctatgggcc ttgttacacg tgaagatagc tatacgattt taactgatat ccaaggtatg
    17401 gaagatgcat taggtgatat ggactttaaa gtcgctggta ctaaagaagg tattacagca
    17461 atccaaatgg atattaaaat tgacggttta acgcgtgaaa ttatcgaaga ggctctagaa
    17521 caagcgagac gtggtcgttt agaaataatg aatcatatgt tacaaacaat tgatcaacca
    17581 cgtactgaat taagtgctta cgcgccaaaa gttgtaacta tgacaattaa accagataag
    17641 attagagatg ttatcggacc tggtggtaaa aaaattaacg aaattattga tgaaacaggt
    17701 gttaaattag atattgaaca agatggtact atctttattg gtgctgttga tcaagctatg
    17761 ataaatcgtg ctcgtgaaat cattgaggaa attacacgtg aagcggaagt aggtcaaact
    17821 tatcaagcca ctgttaaacg tattgaaaaa tacggtgcgt ttgtaggcct attcccaggt
    17881 aaagatgcgt tgcttcacat ttcacaaatt tcaaaaaata gaattgaaaa agtggaagat
    17941 gtattaaaaa tcggtgacac aattgaagtt aagattactg aaattgataa acaaggtcga
    18001 gtaaatgctt cacatagagc attagaagaa taatatttaa agtcatatga cgacaatgta
    18061 tcgtcatgtg atttttttat gccacttttt acgaagtgac ccgttttgaa tttgttgtat
    18121 tgaacatttt aaaacgcttt attattttgt gtgcaactgt taattatcct gtatgtatag
    18181 tgattaatag tgtacatcaa gtgtttttta acttataatg aatagtgagt ttatatatgg
    18241 acgggtaaca aatttaggag gtaagatttt gagtttaata aagaaaaaga ataaagatat
    18301 tcgcattata ccattaggcg gtgttggcga aattgctaaa aatatgtata tcgttgaagt
    18361 agacgatgaa atgtttatgt tagatgctgg acttatgttt ccagaagacg aaatgctagg
    18421 tattgatatt gttataccag acatttcata cgtacttgaa aataaagata aattgaaggg
    18481 tatattcctt acacacggac atgagcacgc gattggtgca gtgagttatg ttttagaaca
    18541 attagatgca ccagtatatg gatctaaatt gacaatagcg ttaattaaag aaaatatgaa
    18601 agcccgtaat attgataaaa aagttcgcta ctatacagtt aataatgatt caattatgag
    18661 attcaaaaac gtgaatatta gtttctttaa tacgacacac agtattcctg atagtttagg
    18721 tgtttgtatt cacacttcat atggtgccat tgtgtataca ggtgaattta agtttgacca
    18781 aagtttacat ggacattatg caccagatat taaacgtatg gcagagattg gtgaagaagg
    18841 cgtatttgtc ttaatcagtg attctactga ggcagagaaa cctggatata atactccgga
    18901 aaatgtgatt gaacatcata tgtatgatgc ttttgcaaaa gtgcgaggtc gcttgatagt
    18961 ttcatgttat gcttcgaact ttatacgtat tcagcaagtt ttaaatattg ctagcaagct
    19021 aaatcgtaaa gtgtcatttt taggaagatc acttgaaagt tcatttaata ttgctcgtaa
    19081 aatggggtat ttcgacattc ctaaagattt gctaattcct ataacagaag ttgataatta
    19141 tcctaaaaat gaagtgataa ttatagctac tggtatgcaa ggagaacctg tagaagcctt
    19201 aagtcaaatg gcgcaacata agcataaaat tatgaatatc gaagaaggcg attctgtatt
    19261 tttagcaatt acggcttctg ctaatatgga agttatcatt gcgaatacat taaatgagct
    19321 tgtacgtgct ggcgcacata ttattccaaa taacaaaaag attcatgctt caagtcatgg
    19381 ttgcatggaa gaattaaaaa tgatgattaa tattatgaaa cctgaatact ttattcctgt
    19441 acaaggtgaa tttaaaatgc agatagcaca tgcgaagcta gcagctgaag caggtgttgc
    19501 accagaaaag attttccttg tggaaaaagg agatgtcatt aattacaacg gtaaagatat
    19561 gatattaaat gaaaaggtaa attcaggaaa tattttaata gatggcattg gtattgggga
    19621 tgtaggaaat atcgtgttga gagaccgtca tcttttagca gaagatggta tctttattgc
    19681 tgttgtaacg ttagatccta aaaatagacg tatagctgcg ggacctgaaa ttcaatctcg
    19741 tgggtttgta tatgtacgtg aaagtgaaga cttattacgt gaagcagaag agaaagtacg
    19801 tgaaatagta gaggctggtt tacaagaaaa acgcatagaa tggtctgaaa ttaaacaaaa
    19861 tatgcgtgat caaattagta aactattatt cgaaagtaca aaacgtcgtc ctatgattat
    19921 tccagtaatt tctgaaattt aatcaaaaag tcattaacat aaaagaggtc agaacaagtc
    19981 actgaaatat aatggttgtc atggacaatt tacttatatt ttatgatggt caattgaagg
    20041 ggtaacgatt aatctgttat cttaagtaaa ttgatacata gatgatattg ttctaacctc
    20101 tttcatcgtc tgtttggact acatattcta aacatcaaat aggaaattat atataataac
    20161 gtcgttttaa ctaaggcaac ataaggaggt gcgtcaattg gcacaagcaa aaaagaaatc
    20221 gacagctaag aaaaaaacaa catcaaaaaa aagaacaaat tcgaggaaaa agaagaatga
    20281 taatccgata cgttatgtca tagctatttt agtagttgta ttaatggtgt tgggtgtttt
    20341 ccaattagga ataataggtc gtctaattga cagcttcttt aattatttat ttgggtacag
    20401 tagatattta acatatattt tagtactctt agcaactggt tttattacat actctaaacg
    20461 tattcctaaa actagacgaa cggctggttc gattgtattg caaattgcat tgctatttgt
    20521 atcacagtta gtttttcatt ttaatagtgg tatcaaagct gaaagagaac ctgtactttc
    20581 ttatgtgtat cagtcatacc aacacagtca tttcccaaat tttggtggcg gtgtattagg
    20641 cttttattta ttagagttaa gcgtaccttt aatttcatta tttggtgtat gtattattac
    20701 tattttatta ttatgctcaa gtgttatttt attaacaaac catcaacatc gtgaagttgc
    20761 aaaagttgca ctggaaaata taaaagcttg gtttggttca tttaatgaaa aaatgtcgga
    20821 aagaaaccaa gaaaaacaat tgaagcgtga agaaaaagca agacttaaag aagaacaaaa
    20881 ggcacgtcaa aatgaacagc cacaaataaa agatgtgagt gattttacgg aagtgcctca
    20941 agaaagagat attccaattt atgggcatac tgaaaatgaa agtaaaagcc agagtcaacc
    21001 aagtcgaaaa aaacgagtgt ttgatgcaga gaatagttcg aataacatcg taaatcatca
    21061 tcaagcagat cagcaagaac aattaacaga acaaactcat aacagtgttg aaagtgaaaa
    21121 cactattgaa gaagctggtg aagttacgaa tgtatcgtat gttgttccac cgttaacttt
    21181 acttaatcaa cctgcaaaac aaaaagcaac atctaaagct gaagtgcaac gtaaaggaca
    21241 agtactagag aatacattaa aagattttgg ggtaaatgca aaagtgacac aaattaaaat
    21301 tggtcctgca gtaactcaat atgaaattca accagctcaa ggggttaaag tgagtaaaat
    21361 tgtaaacttg cataatgata ttgcattagc tttagcagca aaagatgtta gaatcgaagc
    21421 gccaatacct ggtcgttctg cagtaggtat tgaagtgcca aatgagaaaa tttcattagt
    21481 ttcactaaaa gaagttttag atgaaaaatt cccgtctaat aataaactag aagttggatt
    21541 aggaagagat atatcaggtg atccaattac tgttccacta aatgaaatgc cacacttatt
    21601 ggtggcagga tcgacgggta gtggtaaatc tgtttgtata aatggtatta ttacaagtat
    21661 tttattaaat gctaagccgc atgaagttaa acttatgtta atcgatccga aaatggttga
    21721 actaaatgtt tataacggaa ttccacactt attaattccg gttgttacaa atcctcataa
    21781 agctgctcaa gctttagaaa aaattgtagc tgagatggaa agacgttatg atttattcca
    21841 acattcatca actagaaaca ttaaaggtta taacgaatta atccgtaagc aaaatcaaga
    21901 attagatgag aagcaaccag aattacctta tatcgttgtt attgtagatg agcttgcaga
    21961 tttaatgatg gtagctggta aagaagttga aaatgcgatt caacgtatta cacaaatggc
    22021 acgtgcagca ggtatacatt taattgtagc gacacaaaga ccttctgtgg atgtaattac
    22081 aggtatcatt aaaaataata ttccatctag aatagctttt gctgtgagtt ctcaaacaga
    22141 ttcaagaact attattggta ctggcggcgc agaaaagtta cttggtaaag gtgacatgtt
    22201 atacgttgga aatggtgact catcacaaac acgtattcaa ggggcgtttt taagtgacca
    22261 agaggtgcaa gatgttgtaa attatgtagt agaacaacaa caggcaaatt atgtaaaaga
    22321 aatggaacca gatgcaccag tggataaatc ggaaatgaaa agtgaagatg ctttatatga
    22381 tgaagcgtat ttgtttgttg ttgaacaaca aaaggcaagt acatcattgt tacaacgcca
    22441 atttagaatt ggttataata gagcatctag gttgatggat gatttagaac gcaatcaggt
    22501 aatcggtcca caaaaaggaa gcaagcctag acaagtttta atagatctta ataatgacga
    22561 ggtgtaaaaa aatgtcagaa atgaatgcgg tatataacgt taaacaatac attttaaatt
    22621 tgattaagca aaataaattg gaatatggtg accaacttcc aagtaattta tcaattgcca
    22681 gagaattaaa tgtaaaaacc gacgatgttt atgaagcaat tcaggcattg attactgaac
    22741 aagtcattaa agataatttt gaagagggca caagtgttaa gtcactgccc cctttctttt
    22801 atccattgaa tgaacttata agtattgggc aaatgattaa aaatgcagga tttgaatgcg
    22861 gaactgaata cttaaatttt gatgagcaac cagcaactat gttagatgca aatttgttga
    22921 gcgttgaaga aggatatcca gtaaccatta tagaacgatt acgaactgcc gatggagaac
    22981 cggtcgtcta ttgtttagat aaaattgcta aaaaagaatt aacatgtaca gagtatcaaa
    23041 tgagcaatgg atcgattcta agtgcgataa aagaacaaag taatcataat atttgttatg
    23101 ctgatacaga aattgaagcg gtaaattatg aacctcgaat atccgaagta ctgaatgctt
    23161 cgccacacga aggtttgatt ttattaaaaa ttacgcacta taatgaatca gatgaaccta
    23221 ttttgtattc attaaattat atgaaaaata gcttagttca atttaaaatc actagaaaaa
    23281 tatagatgta agaagatata gaggaggcta tatatttgag tagacaatct caaccaaata
    23341 tacatatcaa agtttcacca acaactaaat ttaaaacaac tactatagtt tttaaattta
    23401 tggcaccttt agaatatgac acaataacag ctagatcatt attaagcaaa ttattagttc
    23461 gagcaactaa gaaatggcca accgataagt cgtttaataa tcacttagcc gatttatatg
    23521 gtgcgtatgt gaatagtaca atttcaaaat tcaaagatca gcatgtcatt acattttcat
    23581 tagaaattgt taatgaacgt tatttaagaa acggtgaatc attatttaat caaggattag
    23641 atttattaca agaaatcatt tggaatccat taattgaaaa taaagcattc aatgataatt
    23701 ttgttaacca agagaaaaca ttattagcca aaaaaataga agcaatggta gataataaag
    23761 cacaatattc gtttttaaaa ttactcgacc atatgtttga aaatgaagca tataaatact
    23821 tatctacagg acaactagaa caaatcccac atattactgc tgaaacacta tatcatacat
    23881 atcaatcaat gattaataat gatcaatgtt ctgtttatgt tgtcggcaat gtagaacctg
    23941 aaagtgttga gaaacaaata cgtgaaaaat ttgcacttaa accattcgat aaacatcaat
    24001 tccaacattc tactcatcat ttacacgatg aagaagttga ttatattgtt gaatatgatg
    24061 acgtggatca agctaaatta aatatgggat accgttttcc aacacaatat ggacaaagtg
    24121 gatatgctgc ctttgttgta tttaacatga tgtttggagg agatccttca tctgttttat
    24181 ttaatgaagt gcgagaaaag caaagtttag cgtactctat acattcacaa attgatggca
    24241 aaaatggcta tttatttgtt ttgagtgggg tttcaagtga taagtacgaa actgcaaaag
    24301 acactattat aagtgaattt gaaaaaataa aagcaggaga tttcactgaa gaaaaattag
    24361 agttagctaa aaaagtaatc atttctcatc gatatgaatc tgaagatcgt ccgaaaagta
    24421 ttatagagat tatgcataac caaatattat tagagcaacc acaaagcaaa gaaacattta
    24481 taaatgatat acagaaggta agtcgcgaag atattgtttc tgttgctgaa aaagcatttt
    24541 tagatacaat ctatgtgttg acaaaaggag gggataaata atgaaagagc gttattatga
    24601 attaatagac gaaagagtat tcgaacaaga attagaaaat ggtttacgat tatttattat
    24661 ccccaaacca ggttttcaaa agacatttgt cacttacact acacaatttg gttcattaga
    24721 taatcaattc aaaccccttg gacaagacca atttgttact gtacctgatg gagttgctca
    24781 ctttttagaa cataaattat ttgaaaaaga agaagaagac ttatttactg cgtttgctga
    24841 agataacgca caagcaaatg cgtttacaag ctttgatcgt acaagctact tgttcagtgc
    24901 aactgataat attgaaaaca acattaaacg tttacttaca atggttgaaa cgccttattt
    24961 tacaaaagaa actgttgata aagaaaaagg tattattgca gaagaaataa aaatgtatca
    25021 agagcaacct ggatataaat taatgtttga tacattgcgt gcaatgtatc aacaacatcc
    25081 aatacgtgtt gatattgccg gtagtgtaga aagtatatac gatattacaa aagatgattt
    25141 gtatctatgt tatgaaacgt tttatcatcc atcaaatatg gttttatttg ttgttggcga
    25201 tgtggatcct gaagcaatat gtcgaatagt aaaacaacac gaggatgctc gtaataaagt
    25261 taaccaaccc aaaatcgaac gaggacttgt tgatgaaccg gaggatgtta aagaagcatt
    25321 tgttactgaa tctatgaaaa ttcaatcacc aagactaatg cttggtttta aaaataaacc
    25381 attacaagaa gcgcctcaaa aatatgtaca acgtgattta gaaatgtcat tattctttga
    25441 gttaattttt ggggaagaaa cagattttta tcagaattta ttaaacgaag gacttatcga
    25501 tgatacattt ggttatcaat ttgtactaga gccgacgtat agtttttcaa tcgtgacaag
    25561 tgctactgaa gaaccagata aattaaaaaa attattatta gatgagttgc gtgataaaaa
    25621 aggcaatttc caagatgcag aagcatttga acttttgaaa aagcaattta taggtgaatt
    25681 catatcaagt ttaaactcac ct
//
LOCUS       DAMQWL010000028        25205 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.028, whole genome shotgun sequence.
ACCESSION   DAMQWL010000028 DAMQWL010000000
VERSION     DAMQWL010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 25205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25205
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.028"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(192..1043)
                     /locus_tag="PF788_001046"
     CDS             complement(192..1043)
                     /locus_tag="PF788_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF368 domain-containing protein"
                     /protein_id="HDG6303316.1"
                     /translation="MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASIS
                     GIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYL
                     LKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMC
                     ASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISS
                     KIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLG
                     RITAENE"
     gene            1371..2132
                     /gene="sufC"
                     /locus_tag="PF788_001047"
     CDS             1371..2132
                     /gene="sufC"
                     /locus_tag="PF788_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HDG6303317.1"
                     /translation="MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKS
                     TLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFM
                     RSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQL
                     MMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVH
                     VMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE"
     gene            2230..3537
                     /gene="sufD"
                     /locus_tag="PF788_001048"
     CDS             2230..3537
                     /gene="sufD"
                     /locus_tag="PF788_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HDG6303318.1"
                     /translation="MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPK
                     PDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQ
                     VDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYV
                     PKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIIS
                     EVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNL
                     FGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYI
                     KHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMS
                     RGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK"
     gene            3643..4893
                     /locus_tag="PF788_001049"
     CDS             3643..4893
                     /locus_tag="PF788_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDG6303319.1"
                     /translation="MNEVAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQ
                     VLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTA
                     SINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNI
                     EDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDM
                     QEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLP
                     TKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPP
                     KDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIY
                     NTKEDVDQLINALKQTKEFFSYEF"
     gene            4883..5347
                     /locus_tag="PF788_001050"
     CDS             4883..5347
                     /locus_tag="PF788_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HDG6303320.1"
                     /translation="MNFNNLDQLYRSVIMDHYKNPRNKGVLDNGSMTVDMNNPTCGDR
                     IRLTFDIEDGIIKDAKFEGEGCSISMASASMMTQAVKGHSLGEAMQMSQEFTKMMLGE
                     DYVITEEMGDIEALQGVSQFPARIKCATLAWKALEKGTVAKEGKAEGTTEEE"
     gene            5498..6895
                     /gene="sufB"
                     /locus_tag="PF788_001051"
     CDS             5498..6895
                     /gene="sufB"
                     /locus_tag="PF788_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HDG6303321.1"
                     /translation="MAKKAPDVGDYKYGFHDDDVSIFRSERGLTENIVREISNMKNEP
                     EWMLDFRLKSLKLFYKMPMPQWGGDLSELNFDDITYYVKPSEQAERSWDEVPEEIKRT
                     FDKLGIPEAEQKYLAGVSAQYESEVVYHNMEKELEEKGIIFKDTDSALQENEELFKKY
                     FASVVPAADNKFAALNSAVWSGGSFIYVPKNIKLDTPLQAYFRINSENMGQFERTLII
                     ADEGASVHYVEGCTAPVYTTSSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRT
                     FVYENGNMEWVDGNLGSKLTMKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHK
                     APNTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYN
                     EVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAV
                     EMNRLIKFEMEGSIG"
     gene            7082..7219
                     /locus_tag="PF788_001052"
     CDS             7082..7219
                     /locus_tag="PF788_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDG6303322.1"
                     /translation="MMVDKATTQIQHDCGIRVLVFIKLIESYIKYSLDNSILVRLRFV
                     V"
     gene            complement(7225..7539)
                     /locus_tag="PF788_001053"
     CDS             complement(7225..7539)
                     /locus_tag="PF788_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303323.1"
                     /translation="MYFVLAIFTIISASVSLGYSIQACASSHNINAYYALSRSLPLFL
                     LAIFSLVIHSAIFLITISIAMILVQFLDAIVGYKSEDVFKTYGPLATSVVNLILLIVF
                     LF"
     gene            7904..8944
                     /locus_tag="PF788_001054"
     CDS             7904..8944
                     /locus_tag="PF788_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDG6303324.1"
                     /translation="MIIAIIILIFISFFFSGSETALTAANKTKFKTEADKGDKKAKGI
                     VKLLEKPSEFITTILIGNNVANILLPTLVTIMALRWGISVGIASAVLTVVIILISEVI
                     PKSVAATFPDKITRLVYPIINICVIVFRPITLLLNKLTDSINRSLSKGQPQEHQFSKE
                     EFKTMLAIAGHEGALNEIETSRLEGVINFENLKVKDVDTTPRINVTAFASNATYEEVY
                     ETVMNKPYTRYPVYEGDIDNIIGVFHSKYLLAWSNKKENQITNYSAKPLFVNEHNKAE
                     WVLRKMTISRKHLAIVLDEFGGTEAIVSHEDLIEELLGMEIEDEMDKKEKEKLSQQQI
                     QFQQRKNRNVSI"
     gene            8958..10025
                     /locus_tag="PF788_001055"
     CDS             8958..10025
                     /locus_tag="PF788_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDG6303325.1"
                     /translation="MWNKNRLTQMLSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIG
                     AGYFNTQQLEDEIDYVRQLTSNSFGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLE
                     EPVVKITEEQQFKCHIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDE
                     AIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVSIPVIAAGG
                     IMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDAIINSKETDTVITKAFSGKL
                     ARGINNRFIEEMSQYEGDIPDYPIQNELTSSIRKAAANIGDKELIHMWSGQSPRLATT
                     HPANTIMSNIINQINQIMQYK"
     gene            10092..10190
                     /locus_tag="PF788_001056"
     CDS             10092..10190
                     /locus_tag="PF788_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303326.1"
                     /translation="MRFYFTNLIKRKHQAEDRRKILIKQKHQTKVR"
     gene            10238..11086
                     /locus_tag="PF788_001057"
     CDS             10238..11086
                     /locus_tag="PF788_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDG6303327.1"
                     /translation="MINIGLTGWGDHYSLYEDLERQTDKLKTYAGHFPVVELDATYYA
                     IQPERNILKWIKETPDTFEFVVKIHQALTLHADYKTFADTRQELFDQFKNMLEPLHTQ
                     KKLAMVLVQFPPWFDCNAQNIKYILYVRQQLQAFPMCVEFRHQSWFSDAFKEQTLAFL
                     TEHQIIHAVVDEPQVKDGSVPLVNRITNEIAFVRYHGRNHYGWTKKDMSDQEWRDVRY
                     LYDYNEQELIDLAQKAQILAQKAKKVYVIFNNNSGGHAANNAKTYQRLLNIEYEGLAP
                     QQLKLF"
     gene            11099..11926
                     /locus_tag="PF788_001058"
     CDS             11099..11926
                     /locus_tag="PF788_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDG6303328.1"
                     /translation="MLLTITLLVLIGGLSAIIGSIVGIGGGIIIVPTMVYLGVEHGLL
                     HNITTQVAIGTSSVILIVTGLSSSLGYLKTKQVDIKNGSIFLFGLLPGSLLGSFISRY
                     LTFESFNLYFGIFLIFVAILLMVRNKIKPFKIFDKPKYEKTYVDAKGKTYHYSVPPLF
                     AFITTFLIGILTGLFGIGGGALMTPLMLIVFRFPPHVAVGTSMMMIFFSSVMSSIGHI
                     AQGHVAWGYAIILIISSYFGAKIGVKVNQSIKSDTVVTLLRTVMLLMGIYLIIRALI"
     gene            11953..13272
                     /locus_tag="PF788_001059"
     CDS             11953..13272
                     /locus_tag="PF788_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HDG6303329.1"
                     /translation="MRLTIYHTNDIHSHLHEYERIKAYMAEHRPRLNHPSLYVDLGDH
                     VDLSAPITEATLGKKNVALLNEAKCDVATIGNNEGMTISHEALNHLYDEAKFIVTCSN
                     VIDESGHLPNNIVSSYIKDIDGVKILFVAATAPFTPFYRALNWIVTDPLESIKEEIEL
                     QRGKFDVLIVLSHCGIFFDETLCQELPEIDVIFGSHTHHYFEHGEINNGVLMAAAGKY
                     GNYLGEVNLTFEAHKVVHKTAKIIPLETLPEVETSFEEEGKTLMSNSVIQHPVVLKRS
                     MNHITEAAYLLAQSVCEYTHAQCAIINAGLLVKDIVKDEVTEYDIHQMLPHPINMVRV
                     RLFGVKLKEIIAKSNKQEYMYEHAQGLGFRGNIFGGYILYNLGYIHSTGRYYLNGEEI
                     EDDKEYVLGTIDMYTFGRYFPTLKELPKEYLMPEFLRDIFKEKLLEY"
     gene            13356..14273
                     /gene="lipA"
                     /locus_tag="PF788_001060"
     CDS             13356..14273
                     /gene="lipA"
                     /locus_tag="PF788_001060"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDG6303330.1"
                     /translation="MATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVCEEA
                     KCPNIHECWGARRTATFMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNL
                     KHVVITAVARDDLRDAGSNVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASR
                     PDILNHNIETVRRLTPRVRARATYDRTLEFLRRSKELQPDIPTKSSIMVGLGETIEEI
                     YETMDDLRANDVDILTIGQYLQPSRKHLKVQKYYTPLEFGKLRKVAMDKGFKHCQAGP
                     LVRSSYHADEQVNEAAKEKQRQGEAQLNS"
     gene            14403..14786
                     /locus_tag="PF788_001061"
     CDS             14403..14786
                     /locus_tag="PF788_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YutD family protein"
                     /protein_id="HDG6303331.1"
                     /translation="MIKVDQHYFELIENYRECFNEEQFIARYSDILDKYDYIVGDYGY
                     DQLRLKGFYKDSNKKAEMSKRFSNIQDYIFEYCNFGCPYFVLRHLSKQEVKKLIEEVH
                     PSDVIDDDNKLQDVKIKPTIQDTEH"
     gene            complement(14865..15131)
                     /locus_tag="PF788_001062"
     CDS             complement(14865..15131)
                     /locus_tag="PF788_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3055 domain-containing protein"
                     /protein_id="HDG6303332.1"
                     /translation="MIDMYLYDDNEESQVQFVGFVGEHSRYDLMLVHTNRHYGKTLVL
                     NMQTNKFGIIGTDDLKEEGYIAHILGVNAEEGDEITEYLNEVIH"
     gene            15229..15663
                     /locus_tag="PF788_001063"
     CDS             15229..15663
                     /locus_tag="PF788_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF86 domain-containing protein"
                     /protein_id="HDG6303333.1"
                     /translation="MYFVDKDKLTQKLAYLQALTDDYHESKHNHYAFERIAQMLIESS
                     VDIGNMIIDAFILRDPGNYKDVIDILELENVITKETQQAINKTVGIRKQFTYDYTALD
                     IKIIMPMFDDALPYYKQFITEVTTFLHQENVPVTAFGKGENQ"
     gene            15663..16442
                     /locus_tag="PF788_001064"
     CDS             15663..16442
                     /locus_tag="PF788_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HDG6303334.1"
                     /translation="MKQYKAYLIDLDGTMYMGTDEIDGAKQFIDYLNVKGIPHLYVTN
                     NSTKTPEQVTEKLREMHIDAKPEEVVTSALATADYISEQSPGASVYMLGGSGLNTALT
                     EAGLVIKNDEHVDYVVIGLDEQVTYEKLAIATLGVRNGATFISTNPDVSIPKERGLLP
                     GNGAITSVVSVSTGVSPQFIGKPEPIIMVKALEILGLDKSEVAMVGDLYDTDIMSGIN
                     VGMDTIHVQTGVSTLEDVQNKNVPPTYSFKDLNEAIAELEK"
     gene            16475..17434
                     /locus_tag="PF788_001065"
     CDS             16475..17434
                     /locus_tag="PF788_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000239136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HDG6303335.1"
                     /translation="MVKIVVSRKIPDKFYQQLSKLGDVVMWQKSLVPMPKDQFVTALR
                     DADACFITLSEQIDAEILAQSPNLKVIANMAVGYDNIDVESATANNVVVTNTPNVLTE
                     TTAELGFTLMLAIARRIVEAEKYVEADAWQSWGPYLLSGKDVFNSTIGIYGMGDIGKA
                     FARRLQGFNTNILYHNRSRHKDAEADFNATYVSFETLLAESDFIICTAPLTKETHHKF
                     NAEAFEQMKNDAIFINIGRGQIVDETALIDALDNKEILACGLDVLANEPIDHTHPLMG
                     RDNVLITPHIGSASVTTRDNMIQLCINNIEAVMTNQVPHTPVN"
     gene            17688..17798
                     /locus_tag="PF788_001066"
     CDS             17688..17798
                     /locus_tag="PF788_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303336.1"
                     /translation="MMTTNYYVESIKLKLNFIMNIDIMNCKKQILKRILY"
     gene            17846..17998
                     /locus_tag="PF788_001067"
     CDS             17846..17998
                     /locus_tag="PF788_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499421.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid D-Ala incorporation-associated
                     protein DltX"
                     /protein_id="HDG6303337.1"
                     /translation="MKSKSKQPPNKYVEAFKPYLLTLLYLAIFITLYLIYGSGDTHNN
                     FIYNEF"
     gene            18014..19471
                     /gene="dltA"
                     /locus_tag="PF788_001068"
     CDS             18014..19471
                     /gene="dltA"
                     /locus_tag="PF788_001068"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HDG6303338.1"
                     /translation="MTDIINKLQAFADANPQSIAVRHTTDELTYQQLMDESSKLAHRL
                     QGSKKPMILFGHMSPYMIVGMIGAIKAGCGYVPVDTSIPEDRIKMIINKVQPEFVFNT
                     TDESFESLEGEVFTIEDIKTSQDPVIFDSQIKDNDTVYTIFTSGSTGEPKGVQIEYAS
                     LVQFTEWMLELNKSGNEQQWLNQAPFSFDLSVMAIYPCLASGGTLNLVDKNMINKPKL
                     LNEMLTATPINIWVSTPSFMEMCLLLPTLNEEQYGSLNEFFFCGEILPHRAAKALVNR
                     FPSATIYNTYGPTEATVAVTSIQITQEILDQYPTLPVGVERPGARLSTTDEGELVIEG
                     QSVSLGYLKNDQKTAEVFNFDDGIRTYHTGDKAKFENGQWFIQGRIDFQIKLNGYRME
                     LEEIETQLRQSEFVKEAIVVPVYKNDKVIHLIGAIVPTTEVTDNAEMTKNIKNDLKSR
                     LPEYMIPRKFEWMEQLPLTSNGKIDRKKIAEVING"
     gene            19468..20682
                     /gene="dltB"
                     /locus_tag="PF788_001069"
     CDS             19468..20682
                     /gene="dltB"
                     /locus_tag="PF788_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PG:teichoic acid D-alanyltransferase DltB"
                     /protein_id="HDG6303339.1"
                     /translation="MIPYGDFTFFLIALIALLPVIILGFLGKRSYIYNGVVTAFMIVL
                     IFSSDKHNLFDQKYLSVQLISFIIYVVWQVLLIMFYYHSKPKNNSFSKFVTVMVLSIL
                     PLALVKVLQSTWLGGHQIHFHESKLIEFVGFLGISYVTFKSVQLIMEIRDGSIKEIKV
                     WKLIQFISFFPTISSGPIDRYKRFVKDDKKVPTGNEYRELVLKAIHMIMLGFLYKYIV
                     AYFINTYAIMPLQLDLHGFVNLWLYMYAYSLYLFFDFAGYSLFAIAFSYLFGIKTPPN
                     FDKPFKAKNIKDFWNRWHMTLSFWFRDCIYMRSLFYMSRKKLLKSQFAMSNVAFLINF
                     FIMGIWHGIEVYYIVYGLYHAALFIGYGYYERWRKKHPPRWQNGFTTALSIVITFHFV
                     TFGFLIFSGKLI"
     gene            20700..20936
                     /gene="dltC"
                     /locus_tag="PF788_001070"
     CDS             20700..20936
                     /gene="dltC"
                     /locus_tag="PF788_001070"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002433359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     2"
                     /protein_id="HDG6303340.1"
                     /translation="MEFREQVLNLLAEVAENDIVKENPDVEIFEEGIIDSFQTVGLLL
                     EIQNKLDIEVSIMDFDRDEWATPNKIVEALEELR"
     gene            20933..22108
                     /gene="dltD"
                     /locus_tag="PF788_001071"
     CDS             20933..22108
                     /gene="dltD"
                     /locus_tag="PF788_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HDG6303341.1"
                     /translation="MKLKPFLPILISGAVFIVFLLLPASWFTGLVNEKTVEDNRTSLT
                     DQVLKGTLIQDKLYESNKYYPIYGSSELGKDDPFNPAIALNKHNANKKAFLLGAGGST
                     DLINAVELASQYDKLKGKKLTFIISPQWFTNHGLTNQNFDARMSQTQINQMFQQKNMS
                     TELKRRYAQRLLQFPHVHNKEYLKSYAKNPKETKDSYISGFKENQLIKIEAIKSLFAM
                     DKSPLEHVKPATKPDASWDEMKQKAVEIGKADTTSNKFGIRDQYWKLIQESKRKVRRD
                     YEFNVNSPEFQDLELLVKTMRAAGADVQYVSIPSNGVWYDHIGIDKERRQAVYKKIHS
                     TVVDNGGKIYDMTDKEYEKYVISDAVHIGWKGWVYMDEQIAKHMKGEPQPEVDKPKN"
     gene            complement(22371..22613)
                     /locus_tag="PF788_001072"
     CDS             complement(22371..22613)
                     /locus_tag="PF788_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HDG6303342.1"
                     /translation="MPTEDTTMFDQVAEVIERLRPFLLRDGGDCSLIDVEDGIVKLQL
                     HGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF"
     gene            22714..23037
                     /locus_tag="PF788_001073"
     CDS             22714..23037
                     /locus_tag="PF788_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzD family protein"
                     /protein_id="HDG6303343.1"
                     /translation="MEHVSVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISF
                     KYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITMNDEYVADGYIQTKQITRFIDQ
                     KLVNE"
     gene            complement(23096..24160)
                     /locus_tag="PF788_001074"
     CDS             complement(23096..24160)
                     /locus_tag="PF788_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDG6303344.1"
                     /translation="MKNLVLLGGGYGNMRIMSRILTTSLPQDYTVTLVDRMPFHGLKP
                     EFYALAAGTKSDKDVRMKFPNHPQVNTVYGEINDIDLDAQIVSVGNSKIDYDELIIGL
                     GCEDKYHNVPGAEEYTHSIQTLSKARDTFHSISELPEGAKVGIVGAGLSGIELASELR
                     ESRSDLEIYLYDRGPRILRNFPEKLSKYVAKWFAKNNVTVVPNSNINKVEPGKIYNCD
                     EPKDIDLVVWTAGIQPVEVVRNLPIDINSNGRVIVNQYHQVPTYRNVYVVGDCADLPH
                     APSAQLAEVQGDQIADVLKKQWLNEPLPDKMPELKVQGIVGSLGDKQGFAYIMDRTVT
                     GRLASILKSGVLWLYKYHNG"
     gene            24477..24713
                     /locus_tag="PF788_001075"
     CDS             24477..24713
                     /locus_tag="PF788_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzB family protein"
                     /protein_id="HDG6303345.1"
                     /translation="MNPIVEFCLSNMAKGGDYVFNQLENDPDVDVLEYGCLTHCGICS
                     AGLYALVNGDIVEGDSPEELLQNIYAHIKETWIF"
     gene            24726..25085
                     /locus_tag="PF788_001076"
     CDS             24726..25085
                     /locus_tag="PF788_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HDG6303346.1"
                     /translation="MPTVILTEAAAYEVKDMLKANEMPDGYLKIKVNGGGCTGLTYGM
                     GAEEAPGENDEVLEYFGLKVLVDKKDAPVLNGTTIDFKQSLMGGGFQIDNPNAIASCG
                     CGSSFRTAKVAGNPENC"
BASE COUNT         9067 a         3669 c         4604 g         7865 t
ORIGIN      
        1 cggtataacc atcggctagg tggtttttgt attaaaaaag tggataccaa aatttattaa
       61 taattatttt aatgttagaa aaaaactaaa taaaaactcg ctaatgatat ccaataatat
      121 gtatacaaaa cgagacatat attgcatatg attaacgaga tactgaaaat attttatcac
      181 ccctaaaatg attattcatt ttcagcggta attcgaccta aagtcaaact tacaataaaa
      241 ccgatgataa atactactaa tgaaacgaac cacatcacga tattagttgg taaacctgga
      301 aatactgcaa agagggagcc aacaacaaaa ccaatgatta atgcaaaagt cattagttta
      361 tgatgtgtta ggaaatactg gataattttg cttgaaataa tgaatccagc aagcacgcca
      421 aatccgactg caagtaatat aggaagacct gcaaagttaa gtttaacaac ttcagatatt
      481 gctagcatga ccgtaccata gacgccaaat actaataaca taaatgaccc tgaaatacct
      541 gggagtaaca tagcactaga tgcacacata cctgcaataa aatatttaat aataagacta
      601 gttgatagag taagtgtttc tccagcatgt ttatcaccat tattcattaa tgtaataaca
      661 attaagatag cgataccagc tataaccatc atgtaatgtt tagttgtaaa tgacgtttta
      721 tagttagaaa ttttcaataa atatggaacg ataccaatga ttaatccacc aaagaaaaac
      781 atagttggaa tatggtgttg gcttaataaa taattaaaaa gattacttag tgatcccatt
      841 gccagtaaca ttccaattat aatggggatt aaaaatgtaa aacttggcca aaaacgtcgt
      901 gagaatatgc cgctaattga agcgataaat tgattgtaaa tacctaacaa taatgcgata
      961 gtcccaccgc taacaccagg taccaagtca ctcgttccca tagcaaaacc ttttagaata
     1021 ttaatccatt taaattgttg catgaataac tcctttcaaa cgattggaat aaaatcataa
     1081 atagcatcat accatattac aaatgtccta gtgaaatgat aacatatttt aaattcataa
     1141 aatccattga gaaattatgt gcacttatta tcatttatat ttttaaagag agcggattag
     1201 agttgtactt tagagttatt aaaaataata aaaagggttt aagttgttta tattaaggta
     1261 taagtaagtt ataattaact gaacgcatta ttacaaagtc tttttgacta caaattaaaa
     1321 ttattataaa ctagttaaga aaactttata ttttacggag ggaatataaa atggcatcaa
     1381 cattagaaat caaagaccta catgtgtcta ttgaggataa agaaatctta aaaggtgtta
     1441 acttgacaat taacactgat gaaatacatg cgattatggg accaaacggg acaggtaaat
     1501 caactttatc atctgcaatt atgggacacc caagctatga agtaactaaa ggagaagtac
     1561 ttttagacgg tgtaaatatt ttagaattag aagttgatga aagagcaaaa gcaggattat
     1621 tcttggcaat gcaatatcca tcagaaatta caggtgttac aaatgctgat ttcatgcgtt
     1681 cagcaatcaa tgcgaaacgt gaagaaggac aagaaatcaa cttaatgcaa tttattaaga
     1741 aattagataa aaacatggat tttctagaca tagataaaga catggcacaa cgttatttaa
     1801 atgaaggttt ctcaggtgga gagaagaaac gtaacgaaat cttacaatta atgatgttag
     1861 aacctaagtt tgcaatctta gatgaaatcg attcagggtt agacatcgat gcattaaaag
     1921 ttgtatctaa aggtattaac caaatgcgtg gggaaaactt tggtgcatta atgattacac
     1981 actatcaacg attattaaat tacattactc ctgataaagt acatgtaatg tatgctggta
     2041 aagtcgttaa atctggtggt ccagaattag caaaacgtct tgaagaagaa ggatatgaat
     2101 gggttaaaga agagttcggt tcagctgaat aatcttatta atacagtatc catgagatgt
     2161 tcatctatat atgatgaaaa tgaacattta tacgaaatag taaatttcat caagtaggag
     2221 gaaaaagtta tgacaactga tattttgaac atttctgaag aacaacttgt tgattattct
     2281 aaagcccaca atgaaccttc ttggatgaca gaattacgta aaaaagcttt gaaattaaca
     2341 gaaactttag aaatgccaaa acctgataaa acaaaattaa gaaaatggga ttttgattct
     2401 tttaaacaac acgatgtaaa aggtgatgtt tatcaatctt tatcacaatt acctgagtca
     2461 gtaagagaaa ttattgacgt agatcattct aaaaacttag taattcaaca taataatacg
     2521 attgcgtaca cacaagttga tgataatgca tcgaaagatg gcgttatcgt tgaaggttta
     2581 gcagacgctc ttatgaacca tagtgattta gtacaaaagt actttatgaa agatgcagta
     2641 acagtagatg aacatcgtat cacagcgcta cacacggcat tagttaatgg tggcgtattt
     2701 gtttatgttc ctaaaaatgt agttgtagaa catccagtac aatacgttgt gttgcacgac
     2761 gacgaaaatg caagctttta taaccatgtt atcatcgtta ctgaagaaag cgccgaagtc
     2821 acatatgttg aaaattactt atcaaatgca tctggtgaag gaaatcaatt aaatattatt
     2881 tctgaagtga ttgctggtgc aaattcaaat atcacatatg gctcagtgga ctatatggat
     2941 aaaggcttta caggtcatat cattcgacgt ggtattactg aagcggatgc ctcaattaat
     3001 tgggcactag gtttaatgaa tgagggtagc caaattattg ataatacaac aaatttattt
     3061 ggtgatcgtt caacaagttc acttaaatca gtagttgtag gtacaggcga acaaaaaatt
     3121 aatctaacat ctaaaatcgt acaatatggt aaagaaacag atggttatat ccttaaacat
     3181 ggtgttatga aagaacatgc atcgtctgta tttaatggta tcggctacat taagcatggt
     3241 ggaactaaat caattgctaa tcaggaatca cgtgtattaa tgttatctga acatgctcgt
     3301 ggtgacgcga atcctatttt attaattgat gaagatgatg tacaagctgg tcatgctgca
     3361 tcagtaggtc gtgttgatcc agatcaactt tactatttaa tgagtcgtgg tatttctcaa
     3421 agagaagcgg aacgtcttgt tatacatggt ttcttagatc cagtagtacg tgaattacct
     3481 atcgaagacg ttaaacgtca attgagagaa gtaattgaac gcaaagtttc taaataatat
     3541 tttgaaaata aaagtttgta atagatatag actgtcgata ttggtataag actaatacaa
     3601 cgtcagtatt taaatgatta ggatttttat ttaagaaagg tcgtgaatga agtggccgaa
     3661 cactcatttg acgttaatga agtaatcaag gattttccga tattagatca aaaagtcaat
     3721 ggcaaacgtt tagcatatct tgattcaaca gcgacaagtc aaacgcctgt gcaagtgtta
     3781 aatgttttag aagattacta caagcgttat aattcaaacg ttcatcgtgg tgttcataca
     3841 ttaggatcat tggcaactga tggttatgaa aatgcccgtg aaaccgttcg tcgttttatt
     3901 aatgcgaagt attttgaaga aatcattttt acacgcggaa caactgcgtc gattaacctt
     3961 gtagcacata gctatggtga tgcaaatgtt gaagagggcg atgaaattgt tgtcactgaa
     4021 atggaacatc atgccaatat tgttccttgg caacagttag caaagcgtaa aaatgcgaca
     4081 ttgaaattta taccaatgac agctgacggt gaattaaaca tcgaggatat taagcaaacg
     4141 attaatgata aaacaaagat cgttgctatt gcacatatat ctaatgtgct cggtacaatt
     4201 aatgatgtta aaaccattgc agaaatagct catcaacatg gtgcaattat cagtgttgat
     4261 ggggcgcaag cagcaccaca tatgaaactt gatatgcaag aaatgaatgc tgatttttat
     4321 agttttagtg gtcataaaat gcttggacca acaggtattg gcgtattatt tggtaaacgt
     4381 gagttactac aaaaaatgga accgattgag ttcggtggcg acatgattga ttttgtaagt
     4441 aagtatgatg caacatgggc tgatttacct actaaatttg aggcgggtac tccattaatt
     4501 gctcaagcaa ttgggcttgc agaagctatt cgctatttag aacgcatagg ttttgatgca
     4561 attcataaat atgaacaaga attaacgata tatgcttatg agcaaatgtc tgcaattgaa
     4621 ggaattgaaa tttatggccc gccaaaggat cgtcgtgcag gtgtaataac gtttaattta
     4681 caagatgtac atccacacga tgttgctaca gccgtagata cagaaggtgt agcggttaga
     4741 gctgggcatc attgtgcgca accgttaatg aaatggttaa atgtgtcttc aacagctaga
     4801 gcgagttttt atatatacaa cacgaaagaa gacgttgatc agttaataaa tgccttgaaa
     4861 caaacgaagg agtttttctc ttatgaattt taataatcta gatcaattat atagatctgt
     4921 cattatggat cattataaaa atcctagaaa taaaggtgta ttagataacg ggtctatgac
     4981 agtagatatg aataacccga catgcggtga ccgtatacga ctaacatttg atatagaaga
     5041 cggcattata aaagatgcta agtttgaagg tgaaggttgt tcgatttcaa tggcaagtgc
     5101 atcgatgatg acacaagctg ttaaaggtca ttcacttgga gaagcaatgc aaatgagcca
     5161 agaatttacg aaaatgatgc ttggtgaaga ctatgtgatt acagaagaaa tgggagatat
     5221 tgaagcattg caaggtgtat ctcaattccc agctcgtatt aaatgtgcca cattagcttg
     5281 gaaagcattg gaaaaaggta ctgttgctaa agaaggtaaa gcagaaggta cgactgaaga
     5341 agaatagaat gctgttaatc atagataatt ttgatattag acatataaaa gtataaaaat
     5401 ttttataaga tgtcatgtca ttgttataat atggtttaca tcatgaatta aaaacttacg
     5461 cacgccgttg taaatatatt tttaaggagt gattgaaatg gctaaaaaag cacctgatgt
     5521 tggggattat aaatatggat tccacgacga tgatgtgtcc attttcagat cagaacgtgg
     5581 tttaactgag aatatcgtta gagaaatttc taacatgaaa aatgagccgg aatggatgtt
     5641 agatttccgt cttaaatcat taaaattgtt ttataaaatg ccaatgcctc aatggggtgg
     5701 cgacttatca gaattgaatt tcgatgacat tacttactat gtaaagcctt cagaacaagc
     5761 tgaacgttca tgggatgaag tgccagaaga aattaaaaga actttcgata aattaggaat
     5821 tcctgaagct gaacaaaaat atttagctgg tgtttctgct caatatgaat ctgaagttgt
     5881 ttaccataat atggaaaaag aacttgaaga aaaaggtatt atctttaaag atacagatag
     5941 tgctttacaa gaaaatgaag aattattcaa aaaatacttt gcttctgtag tacctgcagc
     6001 agataacaaa tttgcggcgt taaactcagc agtatggtca ggtggttcgt tcatttatgt
     6061 acctaaaaat atcaaactag atacgccact acaagcttat ttccgtatta actctgagaa
     6121 catgggtcaa tttgaacgta cattaatcat tgctgatgaa ggtgcttctg tacattacgt
     6181 agaaggttgt actgcaccag tttatacaac tagttcttta cactctgctg ttgtggaaat
     6241 cattgtgcat aaagatgcgc acgttcgtta tactacgatt caaaactggg cgaacaatgt
     6301 atacaattta gttacaaaac gtacttttgt ttatgaaaac ggaaatatgg aatgggtaga
     6361 tggtaactta ggttctaagt taacgatgaa atatccaaac tgtgttcttt taggtgaagg
     6421 tgcaaaaggt agtacattat ctattgcatt tgctggtaaa ggacaagttc aagatgccgg
     6481 tgctaaaatg attcataaag cacctaatac atcttctaca attgtttcta aatctatttc
     6541 taaaaatggt ggtaaagtta tttatcgcgg tattgttcat tttggacgta aagcaaaagg
     6601 tgctcgttca aatattgaat gtgatacatt aatcttagat aacgaatcaa catcagatac
     6661 aattccatat aacgaagtat tcaacgatca aatatcatta gaacatgaag ccaaggtttc
     6721 aaaagtttct gaagaacaat tattctatct aatgagtcgt ggtatttctg aagaagaagc
     6781 gacagaaatg attgttatgg gattcatcga accatttaca aaagaacttc caatggaata
     6841 cgcggtcgaa atgaaccgtt taatcaagtt cgaaatggaa ggtagtattg gatagcttta
     6901 aaccgcgttg ttaagccatt cttgacttcc gaaaatggct attgatacca ttttgatact
     6961 gaatataaca aaaagccaca ttactgtggc tttttttgtt ttataactaa atcggattga
     7021 tagataagct ttgtacttat ttatatcagt tcgatttttt gattggtgta aaaaataatc
     7081 attgatggtg gataaagcga caacacaaat acaacatgat tgtggcatta gagtgctggt
     7141 ctttattaaa ttaattgaaa gctacatcaa atattcttta gataattcga tattagttcg
     7201 attaagattc gttgtataag tgagttaaaa taagaaaact attaataata ttaagttcac
     7261 tacagatgtt gctaatggac cataagtttt aaagacatct tcacttttat aaccaacaat
     7321 cgcatctaaa aattgaacta agatcattgc aatggatata gttatcaaaa atatagcact
     7381 atgaatgact aaagaaaaaa tagctaataa aaataaaggt aagcttcgac taagtgcata
     7441 atatgcattt atattatggc tagatgcaca tgcttgaatt gaataaccta aacttacact
     7501 ggcactgatt attgtaaata ttgctaaaac aaaatacatg ttaatccttc tttctatatt
     7561 tggatataaa caagtacttg tctaaagtta tttaaaagat aattagaata aatttatgag
     7621 aaactggttg ttatcattat aatggtttca aatgattata actatgtcat aaactgaatt
     7681 tgttgaaatt tttcattatg caaatttatt aataacaaac agctcgaact atagcatcat
     7741 tttactaatg aatgcattaa agtaactatg actaaaaatg catattaatt atcattatta
     7801 agactattat atataatgaa ttttaactgg tttattaaac gagaacgtcg ggaattaagt
     7861 aactacaata aaaataagat atgacaataa ggagactaca cgcgtgatca ttgccataat
     7921 tatattgata tttatttcgt ttttcttttc aggaagcgag acggcattaa cggctgccaa
     7981 taaaacaaaa tttaaaactg aagctgacaa aggtgataaa aaagcaaaag gcattgtaaa
     8041 gttacttgaa aaaccaagtg agtttattac aacgattcta attgggaata atgtcgcgaa
     8101 tattttatta ccaacacttg ttacaattat ggctttacgt tgggggatta gcgttggtat
     8161 tgcatcagct gttttaacag ttgttatcat tttgatctcc gaagtgattc ccaagtctgt
     8221 cgctgcaaca tttccagata aaataacaag gcttgtatat ccaattatta atatttgtgt
     8281 cattgtgttc cgtcctatca cattactttt aaataagttg acggacagta ttaatcgaag
     8341 tttatctaag ggccaacctc aagaacatca attttcaaaa gaagaattta aaacaatgtt
     8401 agcaattgct ggacatgaag gtgctttaaa tgaaattgag acgagtaggt tggaaggtgt
     8461 cattaatttt gaaaatttaa aagtaaaaga tgtagataca acacctagaa ttaatgtgac
     8521 ggcatttgct tcaaatgcga catacgaaga agtttatgaa acggttatga ataagccata
     8581 cactagatat ccagtgtacg agggagatat tgataacatt attggggtgt ttcattctaa
     8641 atatctgttg gcttggagta ataaaaaaga aaatcaaatt acaaactatt cagctaagcc
     8701 attatttgtg aatgaacaca ataaagctga atgggtatta cgtaagatga ctatttctag
     8761 aaaacattta gcaattgtgt tggacgaatt tggtggtact gaagcgatag tgtcacatga
     8821 agacttaatt gaagaattat taggtatgga aattgaagat gagatggata aaaaggaaaa
     8881 agaaaaactt tctcaacagc aaattcaatt tcaacaacgg aaaaatcgca acgtatctat
     8941 ataaggagcg aacagctatg tggaataaga atcgacttac tcaaatgtta agtattgaat
     9001 atccaattat acaagcaggt atggcaggaa gtacgacacc gaaattagtt gcatcagtaa
     9061 gtaacagtgg tgggttaggc acaataggcg caggttactt taatacgcag caattggaag
     9121 atgaaataga ttatgtacgc caattaacgt caaattcttt tggcgtaaat gtctttgtac
     9181 caagtcaaca atcatatacc agtagtcaaa ttgaaaatat gaatgcatgg ttaaaacctt
     9241 atcgacgcgc attacattta gaagagccgg ttgtaaaaat taccgaagaa caacaattta
     9301 agtgtcatat tgatacgata attaaaaagc aagtgcctgt atgttgtttt acttttggaa
     9361 ttccaagcga acagattata agcaggttga aagcagcgaa tgtcaaactt ataggtacag
     9421 caacaagtgt tgatgaagct attgcgaatg aaaaagcggg tatggatgct atcgttgctc
     9481 aaggtagtga agcaggtgga catcgtggtt catttttaaa acctaaaaat caattaccta
     9541 tggttggaac aatatcttta gtgccacaaa ttgtagatgt cgtttcaatt ccggtcattg
     9601 ccgctggtgg aattatggat ggtagaggag ttttggcaag tattgtctta ggtgcagaag
     9661 gggtacaaat gggcaccgca tttttaacat cacaagacag taatgcatca gaactactgc
     9721 gagatgcaat tataaatagt aaagaaacag atacagtcat tacaaaagcg tttagtggaa
     9781 agcttgcacg cggtatcaac aataggttta tcgaagaaat gtcccaatac gaaggcgata
     9841 tcccagatta tccaatacaa aatgagctaa caagtagcat aagaaaagcc gcagcaaaca
     9901 tcggcgacaa agagttaata catatgtgga gtggacaaag cccgcgacta gcaacaacgc
     9961 atcccgccaa caccatcatg tccaatataa tcaatcaaat taatcaaatc atgcaatata
    10021 aataatcgac cgcaatccac aaaagcacaa gcacccccaa acattatttt agtgcttgcc
    10081 atttttgtgg attgcgtttc tattttacaa atttaatcaa acgaaaacat caagctgaag
    10141 atcgccgaaa gattttaatc aagcaaaaac atcaaactaa agttcgctga aatgattatg
    10201 ataaaagtta tatggtatga tgacattggt gatatatatg ataaacatcg gattaacagg
    10261 ttggggtgat cactattcat tatatgaaga tttagaacgc caaaccgata aacttaaaac
    10321 atatgctgga cattttccgg ttgtcgaatt agatgcgaca tactatgcga tacaaccgga
    10381 aagaaatata ttgaaatgga taaaagaaac gcctgataca tttgaatttg tggtcaaaat
    10441 tcatcaagca ctcacattgc atgcagacta caaaacattt gcagatacaa ggcaagaact
    10501 atttgatcaa tttaagaata tgttagagcc cttacataca cagaaaaaat tagcaatggt
    10561 attggttcaa tttccgccat ggtttgactg caatgcacaa aatatcaaat atattttgta
    10621 tgtaagacag caattacaag catttccaat gtgtgtagaa tttaggcatc aatcatggtt
    10681 tagtgatgca tttaaagaac aaacattggc atttttaaca gaacatcaaa tcattcatgc
    10741 agtagttgat gaaccacaag tgaaagatgg cagtgtacct ttagtcaatc gaatcacaaa
    10801 tgaaattgcg tttgtacgtt atcatggacg taatcattac ggttggacta agaaagatat
    10861 gtcagatcaa gaatggcgcg atgtacgcta tttatatgat tataatgagc aagaattaat
    10921 agacttggca caaaaggcac aaatattagc acaaaaagct aagaaagttt acgtcatatt
    10981 taacaataat tctggtggtc atgcagcaaa taatgccaaa acatatcagc gattattgaa
    11041 tatagaatat gaagggttag caccacaaca attaaaatta ttttaagagg cgacgactat
    11101 gttattaaca attacattat tagttttaat cggaggtttg tcagcgatta tagggtctat
    11161 cgtaggcatt ggaggcggta ttattatcgt tccaacaatg gtttacctcg gtgttgaaca
    11221 tggattacta cataatatta caacacaagt agcgataggg acgtcttcag tcattctaat
    11281 tgtgacagga ctttcttcat cacttggata tttaaaaaca aaacaagttg atattaaaaa
    11341 tggttccatc tttttatttg gactattacc aggttcattg cttgggtcct tcattagtag
    11401 atatttaaca tttgagtcat ttaatttata ttttggtatc tttttaattt tcgtagccat
    11461 tttattaatg gtaagaaata agattaaacc gtttaaaatt ttcgataaac ccaagtatga
    11521 aaagacttat gtagacgcta aaggtaaaac atatcattat agtgttccac cattgtttgc
    11581 ttttattaca acgtttttaa ttggtatatt gacaggttta tttggtattg gaggtggcgc
    11641 actaatgacg ccactaatgc ttattgtatt tagatttcca cctcatgtag ctgttggaac
    11701 aagtatgatg atgattttct tttcaagtgt catgagttct atagggcaca ttgctcaagg
    11761 tcacgtagct tggggttatg caatcatttt aattatttct agttattttg gtgcgaaaat
    11821 cggtgtcaaa gtgaatcaat caattaagtc agatacggta gtaacattat tgagaacagt
    11881 aatgttgtta atgggtatat atttaattat tcgtgcgttg atttaataca actttaaaag
    11941 gaggacgtca atttgaggct tacaatttat catacgaacg atattcatag tcatttacat
    12001 gaatacgaac gcattaaagc atatatggca gaacatcggc cacgacttaa tcatccttct
    12061 ttatatgttg atctaggtga tcatgtagat ttatccgcac ctataactga agcaacttta
    12121 ggtaaaaaga atgtggcatt actaaatgaa gcaaaatgtg atgttgcaac aatcggtaat
    12181 aatgaaggga tgaccatttc acacgaagct ttaaatcacc tttacgacga agcaaaattt
    12241 atagtgacat gtagcaatgt tatagatgaa tcaggtcatt taccaaataa tatcgtttct
    12301 tcttatatta aggacataga cggtgtgaaa atactattcg ttgcagcgac agcacctttt
    12361 accccatttt atcgtgcact aaattggatt gttaccgatc cacttgaatc tataaaagaa
    12421 gaaattgaac ttcaacgagg taaatttgat gtattaatcg tgctaagtca ttgtggcatt
    12481 ttcttcgatg aaacattatg ccaagaattg cctgaaattg atgtcatttt tggtagtcat
    12541 acgcatcatt attttgaaca tggtgaaatc aataatggtg tactgatggc ggcagctgga
    12601 aagtatggta attatcttgg agaggttaat ttaacttttg aggcacataa agtagtacat
    12661 aaaactgcaa agattattcc tttagaaaca ttacctgaag ttgaaacttc atttgaagaa
    12721 gaaggaaaaa cgttaatgtc caattcagta attcaacatc cagtagtgct taagcgtagt
    12781 atgaatcaca taactgaagc tgcatactta ttagctcaaa gtgtttgtga gtatacacat
    12841 gcacaatgtg ccatcatcaa tgctggctta ctcgttaaag atattgtaaa agatgaagtg
    12901 acagaatatg acattcatca aatgttaccg catccgatta atatggtaag ggttagactt
    12961 tttggtgtga aattaaaaga gattatagct aaaagtaata aacaagaata tatgtatgaa
    13021 catgcacaag gtttgggttt cagagggaat atatttggag gatatattct ttataattta
    13081 gggtacattc attctacagg gcgttactat ctgaatggag aagaaatcga agacgacaaa
    13141 gaatatgtac taggtacgat agatatgtat acgttcggtc gttatttccc aacattgaaa
    13201 gaattaccaa aagagtattt aatgccagag tttttaagag atatatttaa agaaaaatta
    13261 ttggaatatt aaaaagtaag attattggat tttcatttgt catgaatttc gatataatgt
    13321 ttaaagatac acttaacagg agggtatgtg ttgttatggc gacaaaaaac gaggaaatat
    13381 tacgtaaacc ggattggttg aaaataaaat taaataccaa cgaaaactat acaggactta
    13441 agaagatgat gagggaaaaa aatcttaata ctgtatgtga agaagctaaa tgtcctaata
    13501 tacatgaatg ttggggtgca cgtcgtacag cgacatttat gattttaggt gccgtatgta
    13561 caagagcttg tcgtttttgt gcggttaaga caggtttacc taatgaactt gatttaaatg
    13621 agcctgaacg tgtagctgaa tcagttgaat taatgaattt gaaacacgtt gttatcactg
    13681 ctgttgcgcg tgatgattta agagatgctg gttcaaatgt ttatgctgag acagtacgta
    13741 aagttagaga aagaaatcca tttacaacga ttgaaatttt accatcagat atgggcgggg
    13801 actatgatgc gttagaaaca ttaatggcgt caagacctga cattttaaac cataatattg
    13861 aaactgttcg tcgcttaaca ccgagagttc gtgcgcgtgc gacttacgac agaacattag
    13921 agtttttacg tcgttcaaaa gaattacaac cggatatccc aactaaatca agtattatgg
    13981 ttggattagg tgaaactata gaagaaattt atgaaacgat ggatgattta cgtgcgaatg
    14041 atgtagatat tttaacgatt ggtcaatatt tacaaccttc acgtaaacat ttaaaggttc
    14101 aaaaatatta cacgccttta gagtttggta aattaagaaa agtggcaatg gataaagggt
    14161 ttaaacattg ccaagctgga cctttagtac gtagttctta tcatgcggat gagcaagtaa
    14221 atgaagctgc taaagaaaag caacgccaag gtgaggcaca gttaaatagt taatatttaa
    14281 ccattaataa ggcataaagg cttagtttgt acaaaacgaa cgtgtcatag aagtaatcat
    14341 tatttttatg aaacactaaa agtataaact gagcctttca ttgtcataga taggtgaaga
    14401 atttgataaa agtagatcaa cattactttg aattaataga aaattatcgc gaatgtttta
    14461 atgaagaaca atttattgct aggtattcag atattttaga taaatatgat tacatagttg
    14521 gtgactatgg ttacgatcaa ttacgattaa aaggttttta caaagattct aataaaaaag
    14581 cagagatgag taaacgtttt tcaaatattc aagattacat atttgaatat tgtaactttg
    14641 gttgtcctta ctttgtatta agacatttgt ctaaacaaga ggttaaaaag ttaatcgaag
    14701 aagttcatcc gtctgatgtg atagatgacg acaataaact tcaagatgtg aagattaagc
    14761 caaccattca agatactgaa cattaataaa acccttagct agattgaaaa tgggaatcat
    14821 gcaattcaag catggacctg taatctagtt aggggttttt atctttaatg aatgacttca
    14881 tttaaatact cagtaatttc atcgccttct tcagcattta cacctaaaat atgagcgata
    14941 tagccttctt cttttaaatc atcagtaccg ataataccga atttatttgt ttgcatatta
    15001 agtacgagtg tcttaccata atgtctattt gtatggacta acatcaaatc atatcgacta
    15061 tgctcgccaa caaaaccaac aaactgaact tgactctctt cgttgtcatc atataaatac
    15121 atatcaatca ttttgtagcg actcctttta aaagtagtaa agttagtata acgacaaatg
    15181 aagtatactg caaaattatg ataatatata agtgagaggt gacaaggaat gtattttgta
    15241 gacaaagata aactaactca gaaattagcc tatttacaag cattaactga tgattatcat
    15301 gagagcaagc acaatcatta tgcatttgaa cgcattgctc aaatgttgat agaatcatcg
    15361 gtagatatag ggaatatgat tatcgatgca tttattttaa gggatcctgg taattataaa
    15421 gatgtgattg atatattaga actagaaaat gttattacta aagaaacaca gcaggcgatt
    15481 aataaaactg tcggtattcg taaacaattt acatatgatt acacagcctt agatattaag
    15541 attatcatgc caatgtttga tgacgcatta ccttattaca aacaatttat tacagaagta
    15601 acgacatttt tacatcaaga aaatgtacca gtaacagctt ttggtaaagg agaaaatcaa
    15661 taatgaaaca gtataaagcg tatttaatcg atttagatgg cacaatgtat atgggaacag
    15721 atgagattga tggagcaaaa caattcatcg attatttaaa tgtaaaaggc attcctcatt
    15781 tatacgtaac taataattca acaaaaacac ctgagcaagt aactgaaaaa ttacgtgaaa
    15841 tgcacattga tgctaaacca gaagaggttg taacgtcagc gttagccact gctgattata
    15901 tttcagaaca atcaccagga gcatcagtat atatgttagg tgggagtggt ttaaatactg
    15961 cgttaaccga agcgggactt gtcattaaaa atgacgagca tgttgattat gtagttattg
    16021 gacttgacga acaagttaca tatgaaaagc ttgcgattgc aacgttaggt gtaagaaatg
    16081 gtgcaacatt tatttctaca aatcctgatg tatcaattcc taaagagcgt ggtttattac
    16141 ctggtaatgg tgctattaca agtgttgtaa gtgtatcgac aggtgtatcg ccacaattta
    16201 ttggtaaacc agaaccgatt attatggtta aagcattaga aattttagga ttagataaat
    16261 ccgaagttgc tatggtaggc gatttgtacg ataccgatat tatgtctggt attaacgtag
    16321 gtatggatac gattcatgta caaacaggtg tatctacgtt agaagatgtg caaaataaaa
    16381 atgtgccacc aacgtattct tttaaagatt taaatgaagc aatagctgaa ttagaaaaat
    16441 agatatagtc attttataaa gtaggtgaat tgatttggta aaaatagttg tttcgaggaa
    16501 aattccagat aaattttatc aacaattaag taaacttggt gacgttgtta tgtggcaaaa
    16561 atcattagtg cctatgccta aagatcaatt tgtgacagca cttcgtgacg cagatgcttg
    16621 ttttattaca ttaagtgaac agatcgatgc agaaatttta gcgcaatcac caaatttaaa
    16681 agtaattgcg aatatggctg taggatatga caacatcgat gttgaaagtg caacagcgaa
    16741 taacgtggtt gtcacgaata caccaaatgt acttactgaa acaactgcag aattaggatt
    16801 tacattaatg cttgctatag cacgccgtat tgtagaagct gaaaaatatg tagaagcaga
    16861 tgcatggcaa agctggggtc cttatttatt gtcaggtaaa gatgtcttca attcaactat
    16921 tggaatatat ggtatgggag atattggtaa agcttttgca agaaggttgc aagggtttaa
    16981 tactaatatt ctttatcata atcgatcaag acataaagat gcagaggcgg actttaatgc
    17041 aacatatgtt tcttttgaaa cgttgttagc agaaagtgat tttatcatct gtacagcgcc
    17101 acttacaaaa gaaacacatc ataaatttaa tgctgaagca tttgaacaaa tgaaaaatga
    17161 tgcaattttt attaatatcg gtagaggaca aattgtagat gaaacagcat taatcgatgc
    17221 actagacaat aaagaaattt tagcatgtgg tttagatgta ttagcaaatg aaccgattga
    17281 tcatacacat ccattaatgg gacgtgataa tgttctgatt acaccacaca ttggtagcgc
    17341 atcagtaaca acacgggaca atatgattca attatgtatt aataatatag aagcggttat
    17401 gacaaatcag gtaccacata ctccagtaaa ttgaaaataa gtatggtttt taatcattgg
    17461 taaaacaagc aaagcaattg ttaaatatgt tatgcttgac ttgcgaatgt atatatttgc
    17521 gctgatgata attcaataac attataaact cgtcatatta atgtgatgag tttatttgat
    17581 tttgacgtat ataacaaaat tgttatatag actgtaattg tttattgttt aaataacctt
    17641 taaaatgaat gatgttctca acaaagtgta tcatttacaa taattgagtg atgacaacca
    17701 attactatgt tgaatctata aaattaaaat tgaatttcat tatgaatatc gatataatga
    17761 attgtaaaaa acaaatttta aaacgtattt tatattgaac ggtctttata aaggcgtttt
    17821 tactaagaac tttaagaggt gcaatatgaa atctaaaagt aaacagccac ctaataaata
    17881 tgttgaagca ttcaaaccat atttattaac actattgtat ttggcaatat ttattacttt
    17941 atatttaatt tatggcagtg gcgacacaca caataacttc atttataatg agttctaatg
    18001 agggagactt aatatgacag atattattaa caagctgcaa gcgtttgcgg atgcaaatcc
    18061 acaaagcatt gctgttagac acacaactga tgaattaact tatcaacagt taatggatga
    18121 gtctagtaaa ttagcacatc gattacaagg tagtaagaaa ccgatgattt tattcggtca
    18181 catgtcacca tatatgattg ttgggatgat tggtgccatt aaagcaggat gtggatatgt
    18241 acctgtagac acttcaattc ctgaagaccg tattaaaatg attattaaca aggttcaacc
    18301 agagtttgta tttaatacga ctgatgaatc atttgaaagt ttagaaggcg aagtatttac
    18361 aatagaagat attaaaacat ctcaagaccc agtaattttt gatagtcaga ttaaagataa
    18421 cgacacagta tacacaatct ttacatctgg ttctactggg gaacctaaag gtgttcaaat
    18481 tgaatatgca agtttagttc aatttactga gtggatgtta gaacttaata aatcaggaaa
    18541 tgaacaacaa tggcttaacc aagcgccatt ttcatttgat ttatctgtaa tggctattta
    18601 tccatgttta gcatcaggcg gtacattaaa tcttgtagat aaaaacatga ttaataaacc
    18661 taaattatta aatgaaatgc taacagcaac accgattaac atttgggtat caacaccatc
    18721 atttatggaa atgtgtttat tattaccaac gcttaatgaa gaacaatatg gtagtcttaa
    18781 cgaattcttc ttctgtggtg aaattctacc tcacagagca gcaaaagcgt tagtaaaccg
    18841 tttcccaagt gcgacgattt acaacacata tggtccaact gaagctacgg tagcagttac
    18901 aagtattcaa attacacaag aaatcttaga tcaatatccg acattacctg ttggcgttga
    18961 aagaccaggc gcaagattat ctactacaga tgaaggtgaa cttgttatcg aaggtcaaag
    19021 tgtaagttta ggatacttaa aaaatgacca aaaaacagct gaagtattta atttcgatga
    19081 cggtattcgt acatatcaca ctggtgataa agcgaagttt gaaaatggtc aatggttcat
    19141 tcaaggtcgt attgatttcc aaatcaaatt gaatggctac agaatggaat tagaagaaat
    19201 tgaaacacaa ttacgccagt ctgagttcgt aaaagaagcg attgttgtac ctgtatataa
    19261 aaatgataaa gttattcatt taattggtgc aattgtgcca acgactgaag ttacggacaa
    19321 tgcagaaatg actaaaaata ttaaaaatga cttgaaatca cgcttaccag agtatatgat
    19381 tcctagaaag tttgaatgga tggaacaatt gccattgact tcaaatggta aaattgacag
    19441 aaagaaaatt gcagaggtaa ttaacggatg attccatatg gtgattttac attcttctta
    19501 attgctttaa ttgcattatt accagtcatt atacttggat ttttaggtaa gcgaagttac
    19561 atttataatg gcgtagttac agcatttatg attgtgttaa tcttttcttc tgataaacat
    19621 aatctgtttg accaaaagta tttaagtgtt caattaatta gttttattat ttacgtcgta
    19681 tggcaagttt tattgataat gttttattat cattcaaaac caaaaaataa ttcattttca
    19741 aaatttgtaa ctgtaatggt tttatcaata ttgccattag cacttgtgaa agtgttacaa
    19801 agtacatggt taggtggaca tcagattcac ttccatgaaa gtaaattaat tgaatttgtt
    19861 ggtttcttag gaatttctta tgttacattc aaaagtgtgc agttaattat ggaaattcgt
    19921 gatggttcta tcaaagaaat taaagtatgg aaattaattc aatttatttc attcttccca
    19981 acgatttcat ctggaccaat cgatcgttac aaacgtttcg ttaaagacga taaaaaagta
    20041 ccaacaggca atgaatatcg tgaattagta ttaaaagcaa ttcacatgat tatgcttggt
    20101 ttcttgtata aatatattgt tgcttacttt attaacacat atgcaatcat gccgttacaa
    20161 ttagacttac atggctttgt caatttgtgg ttatatatgt acgcatacag cttatattta
    20221 ttctttgact ttgcaggtta tagtttattt gcgatagcat ttagttattt attcggtatt
    20281 aaaacaccac caaacttcga taaacctttc aaagcgaaaa atattaaaga tttctggaat
    20341 agatggcata tgacattatc attctggttc agagattgta tttacatgag atctttattc
    20401 tacatgtctc gtaaaaaatt attgaagagt caatttgcaa tgtctaacgt ggcattctta
    20461 atcaacttct tcataatggg aatttggcat ggtatcgaag tgtattacat tgtttatggt
    20521 ttataccatg cagcattgtt tataggttat ggctattatg aacgttggcg taagaaacat
    20581 ccgccacgtt ggcaaaatgg tttcacaaca gcacttagca ttgtgattac attccacttt
    20641 gtaacatttg gctttttaat cttctcaggt aaacttatat aataaaggag aatttaatta
    20701 tggaatttag agaacaagta ttaaatttat tagcagaagt agcagaaaat gatattgtaa
    20761 aagaaaatcc agacgtagaa atttttgaag aaggtattat tgattctttc caaacagttg
    20821 gattattatt agagattcaa aataaacttg atatcgaagt atctattatg gactttgata
    20881 gagatgagtg ggcaacacca aataaaatcg ttgaagcatt agaagagtta cgatgaaatt
    20941 aaaacctttt ttacccattt taattagtgg agcggtattc attgtctttc tattattacc
    21001 tgctagttgg tttacaggat tagtaaatga aaagactgta gaagataata gaacttcatt
    21061 gacagatcaa gtactaaaag gcacactcat tcaagataag ttatacgaat caaacaagta
    21121 ttatcctata tacggctcta gtgaattagg taaagatgac ccatttaatc ctgcaattgc
    21181 attaaataag cataacgcca acaaaaaagc attcttatta ggtgctggtg gttctacaga
    21241 cttaattaac gcagttgaac ttgcatcaca gtatgataaa ttaaaaggta agaaattaac
    21301 atttattatt tcaccacaat ggtttacaaa ccatggttta acgaatcaaa actttgatgc
    21361 tcgtatgtct caaactcaaa ttaatcaaat gttccagcag aaaaacatgt ctactgaatt
    21421 aaaacgtcgt tatgcacaac gtttattaca gtttccacat gtacacaata aagaatactt
    21481 gaaatcttat gctaaaaacc ctaaagaaac taaagatagt tatatttctg gttttaaaga
    21541 gaatcaattg attaaaatag aagcgattaa atcattgttt gcaatggata aatctccatt
    21601 agaacatgtt aaacctgcta caaaaccaga cgcttcttgg gatgagatga aacaaaaagc
    21661 agttgaaatt ggtaaagctg atactacatc gaataaattt ggtattagag atcaatactg
    21721 gaaattaatt caagaaagta agcgtaaagt tagacgtgac tacgaattca atgttaattc
    21781 tccagaattc caagatttag aattacttgt aaaaacaatg cgtgctgctg gtgcagatgt
    21841 tcaatatgta agtattccat caaacggtgt atggtatgac cacattggta tcgataaaga
    21901 acgtcgtcaa gcagtttata aaaaaatcca ttctactgtt gtagataatg gtggtaaaat
    21961 ttacgatatg actgataaag aatatgaaaa atatgttatc agtgatgccg tacacatcgg
    22021 ttggaaaggt tgggtttata tggatgagca aattgcgaaa catatgaaag gtgaaccaca
    22081 acctgaagta gataaaccta aaaattaaaa tacaaatagc acataactca acgattttga
    22141 ttgagcgtat gtgctatttt tatattttaa atttcataga atagaatagt aatatgtgct
    22201 tggatatgtg gcaataataa aataattaat cagataaata gtataaaata actttcccat
    22261 cagtccaatt tgacagcgaa aaaagacagg taataactga ttataaataa ttcagtattc
    22321 ctgtctttgt tgttattcat aatatgttct gttaacttaa tatctttata ttagaatact
    22381 tgttctactt ctattacacc aggcacttct tcgtgtaatg cacgctcaat accagcttta
    22441 agagtgattg tagaacttgg gcatgtacca catgcaccat gtaattgtaa tttaacaata
    22501 ccgtcttcca cgtcaatcaa tgagcagtcg ccaccatcac gtaataaaaa tggacgaaga
    22561 cgttcaataa cttctgctac ttgatcaaac atcgttgtat cttcagtagg catcaggcaa
    22621 gtctcctttc gagagatgaa tttgataatc tttattagta tattataata gatagtgtaa
    22681 taaaaatcta tcaaaccaat gggggataaa tatatggagc acgtgagtgt ggtagtttat
    22741 ggggcagatg ttatatgtgc aagttgcgtt aatgcgccaa catcgaaaga tatttatgac
    22801 tggctacagc cgctattaaa aagaaaatac ccaaatatat catttaaata tacgtatata
    22861 gatattacaa aagataatga caacttaaca gatcatgatt tacaatttat tgaaagaata
    22921 gaacaagatg aactatttta tccattaatt acaatgaacg atgaatatgt agcagatggt
    22981 tatatacaaa caaagcaaat cactcgattt atagaccaaa agcttgtgaa tgaataatat
    23041 acacataact aaaagcaatg tcagtaatag tgtgaactga cattgctttt taattttaac
    23101 cattgtgata tttatataac caaagtacgc cggattttaa aatagaagcg agtcgtcctg
    23161 ttacagtgcg gtccatgata tatgcaaaac cttgcttatc tcctaatgac ccaacgatac
    23221 cttgtacctt tagttccggc attttgtcag gtaatggttc atttagccat tgctttttaa
    23281 gcacatcggc aatttgatca ccttgaactt cggctaactg agcacttggc gcatgtggta
    23341 aatcagcaca atcaccaact acatagacgt tacgatatgt tggtacttga tgatactggt
    23401 taactatcac gcgtccatta ctatttatat caatcggcaa gttacgaaca acttcaacag
    23461 gttgaattcc tgctgtccat acaactaaat caatatcttt aggttcatca cagttatata
    23521 ttttaccagg ttcaacttta ttaatatttg aatttggaac aacggtaaca ttatttttgg
    23581 cgaaccattt cgcaacatac ttacttaatt tttctggaaa atttcttaaa attcgcggcc
    23641 cacggtcata aagatatatt tccaagtctg atctactttc tcttaattcg ctggcaagtt
    23701 ctatgccgct taatccagca ccaacgatac cgactttagc accttctggt agttcactaa
    23761 tactatggaa agtatcccga gcctttgaga gtgtttgaat actatgtgta tattcttcgg
    23821 ctcctggaac gttatgatat ttatcttcac atcctaaacc aatgattagc tcatcataat
    23881 caattttaga attaccgact gagacaattt gagcatctaa atctatgtcg ttaatttcac
    23941 cataaactgt attcacttgt ggatgattag ggaatttcat acgaacatct ttatctgatt
    24001 tcgtgcccgc agctaaagca taaaattctg gtttcaatcc atgaaatggc atacgatcaa
    24061 ctaatgtgac tgtataatct tgtggtaaag aagtagttaa aatgcgtgac atgatacgca
    24121 tattaccata tccgccgcct aacaaaacta agtttttcat aatgaagtac cccttttata
    24181 tgttaatatt tactttaatt ttgaaaagat caaagtgcat agatatattt gttaatgaac
    24241 agttataaaa tgcaagtgtc tttgattcat caataacccc taaaaaagta aatatgtatt
    24301 tatatgctta ttatatattt ttttgaaaat gactacaaat aaatatttgt actaactaag
    24361 gcactattac ataactggga taagaaacat cagttgttgc taattgagca catcatgtta
    24421 aaataccagt tttaaaatgc tataatattg taacaaatga aataagaagg tgaagtatga
    24481 atccgatcgt agaattttgt ctctctaaca tggcaaaagg tggagattat gtttttaatc
    24541 aactggaaaa tgacccagat gtcgatgtgt tagagtatgg ttgcctgaca cattgtggta
    24601 tatgttcagc cgggttgtat gctttagtaa atggtgatat tgttgaaggt gattcgccgg
    24661 aagaattatt acaaaatata tatgcacata taaaagaaac ttggattttt taaggaggag
    24721 ttatcatgcc aacagttata ttaacagaag cagctgctta cgaagtaaaa gatatgctta
    24781 aagcaaatga aatgccagat ggctatttaa aaattaaagt gaatggtggc gggtgcactg
    24841 gtttaacata cggtatgggt gcagaagaag cgcctggtga aaatgatgaa gtcttagaat
    24901 actttggatt aaaagtatta gtagacaaaa aagatgcacc cgtattaaat ggtacgacta
    24961 ttgattttaa gcaatcatta atgggtggcg gtttccaaat cgacaatcct aatgcaattg
    25021 cttcatgtgg ctgtggtagt tcatttagaa ctgcaaaagt tgcaggtaat cctgaaaatt
    25081 gctaataaaa taacttttta atggttaacc caatttttgg gatacaaatt gatatcaata
    25141 acgattaagg acatatttga ttatgtccta tttttgcgta aagatatttt gttttattaa
    25201 aaagc
//
LOCUS       DAMQWL010000029        23943 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.029, whole genome shotgun sequence.
ACCESSION   DAMQWL010000029 DAMQWL010000000
VERSION     DAMQWL010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 23943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23943
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.029"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            107..412
                     /locus_tag="PF788_001077"
     CDS             107..412
                     /locus_tag="PF788_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P27 family phage terminase small subunit"
                     /protein_id="HDG6303347.1"
                     /translation="MKLTKKQLKEYIEDYKKSDDILINLYIETYEFYCRLRDELKNSD
                     LMIEHTNKAGASNIVKNPLSIELTKTVQTLNNLLKSMGLTAAQRKKIVQEEGGFGDY"
     gene            402..2093
                     /locus_tag="PF788_001078"
     CDS             402..2093
                     /locus_tag="PF788_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDG6303348.1"
                     /translation="MTIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVKKECERHLRYL
                     ENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLR
                     RFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMI
                     KASPKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLI
                     SVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDD
                     DDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMS
                     FIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWI
                     PKHKVEYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRAN
                     AFKLNQELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQL
                     KLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIMNKVVSDKGEGNIEFISIKDIMR"
     gene            2098..3336
                     /locus_tag="PF788_001079"
     CDS             2098..3336
                     /locus_tag="PF788_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDG6303349.1"
                     /translation="MNVIAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVI
                     NNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFIN
                     QIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKL
                     IVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGS
                     NVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVAN
                     VFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRY
                     FKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPI
                     DTPLELRKSLKGGDKNVNES"
     gene            3320..4093
                     /locus_tag="PF788_001080"
     CDS             3320..4093
                     /locus_tag="PF788_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HDG6303350.1"
                     /translation="MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNK
                     LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD
                     TIFMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQ
                     MLDAETWLTAEEALSFGLIDEILGANEIAASISKEQYKRFENVPEDLKKDVDKITKID
                     DVDTSELVETPKESMSLEEKEKREKIKRECEILKMTMNY"
     gene            4105..5268
                     /locus_tag="PF788_001081"
     CDS             4105..5268
                     /locus_tag="PF788_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDG6303351.1"
                     /translation="MPTLYELKQSLGMIGQQLKNKNDELSQKATDPNIDMEDIKQLET
                     EKAGLQQRFNIVERQVQDIEEKEKAKVKDKGEAYQSLSDNEKMVKAKAEFYRHAILPN
                     EFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIKGL
                     EIPRVSYTLDDDDFITDVETAKELKAKGDTVKFTTNKFKVFAAISDTVIHGSDVDLVN
                     WVENALQSGLAAKERKDALAVSPKSGLEHMSFYNGSVKEVEGADMYDAIINALADLHE
                     DYRDNATIYMRYADYVKIISVLSNGTTNFFDTPAEKVFGKPVVFTDAAVKPIVGDFNY
                     FGINYDGTTYDTDKDVKKGEYLFVLTAWYDQQRTLDSAFRIAKAKENTGPLPS"
     gene            5337..5615
                     /locus_tag="PF788_001082"
     CDS             5337..5615
                     /locus_tag="PF788_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage gp6-like head-tail connector protein"
                     /protein_id="HDG6303352.1"
                     /translation="MSLEEIKLWLRIDYNFENDLIEGLIQSAKSELLLSGVPDYDKDD
                     LEYPLFCTAIKYIIARDYESRGYSNDQSRSKVFNEKGLQKMILKLKKW"
     gene            5627..5959
                     /locus_tag="PF788_001083"
     CDS             5627..5959
                     /locus_tag="PF788_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303353.1"
                     /translation="MEFNEFKDRAYFFQYINKGPYPDEEEKMKLYSCFCKIYNPSMKD
                     REILKATESKSGLTIIVRSSKTEYLPQTNHLVKIDSALYSDKLFNIVEIRIDTPDIGY
                     NTVVLSEK"
     gene            5956..6357
                     /locus_tag="PF788_001084"
     CDS             5956..6357
                     /locus_tag="PF788_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303354.1"
                     /translation="MSVEIKGIPEVLNKLESVYGKQAMQAKSDKALNEASEFFIKALK
                     KEFESFKDTGASIEEMTKSKPYTKVGSQERAVLIEWVGPMNRKNIIHLNEHGYTRDGK
                     KYTPRGFGVIAKTLAASERKYREIIKKELAR"
     gene            6358..6753
                     /locus_tag="PF788_001085"
     CDS             6358..6753
                     /locus_tag="PF788_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3168 domain-containing protein"
                     /protein_id="HDG6303355.1"
                     /translation="MNILNTIKGILLSDAELKTHINSRIYYYKVTENAETSKPFVVIT
                     PVYDLPSDFMSDKYLSEEYLIQIDVESSNNQKTIDITKRIRYLLYQQNLIQASSQLDA
                     YFEETKRYVMSRRYQGIPKNIYYKNQRIE"
     gene            6788..7429
                     /locus_tag="PF788_001086"
     CDS             6788..7429
                     /locus_tag="PF788_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDG6303356.1"
                     /translation="MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLN
                     ITGLAPDLVDMFASNKRVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWV
                     GENTRAPYVTVIGESEDGLTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGD
                     WMNRKVDVDGTSQGIVYGYHEGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS"
     gene            7521..7976
                     /locus_tag="PF788_001087"
     CDS             7521..7976
                     /locus_tag="PF788_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig domain-containing protein"
                     /protein_id="HDG6303357.1"
                     /translation="MTKTLKVYKGDDVVASEQGEGKVSVTLSNLEADTTYPKGTYQVA
                     WEENGKESSKVDVPQFKTNPILVSGVSFTPETKSIMVNTDDNVEPNIAPSTATNKILK
                     YTSEHPEFVTVDENTGAIHGVAEGTSVITAMSTDGSDKSGQISVTVTNG"
     gene            8034..8384
                     /locus_tag="PF788_001088"
     CDS             8034..8384
                     /locus_tag="PF788_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303358.1"
                     /translation="MIKFEIKDRKTGKTESYTKEDVTMGEAEKCYEYLELVNQENKKE
                     APNATKMRQKERQLLVDLFKDEGLTEEDVLNKMSTKTYTKALQDIFREINGEDEEDSE
                     TEPEEMGKTEEQSQ"
     gene            8426..8584
                     /locus_tag="PF788_001089"
     CDS             8426..8584
                     /locus_tag="PF788_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303359.1"
                     /translation="MEQYGWTLTEVRKQPYVKLLEILNEENKEETEEKQSEQKVITGT
                     DLRKLFGS"
     gene            8598..14798
                     /locus_tag="PF788_001090"
     CDS             8598..14798
                     /locus_tag="PF788_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDG6303360.1"
                     /translation="MNEKVEGMTLELKLDHLGVQECMKGLKRQLGVVNSEMKANLSAF
                     DKSEKSMEKYQARIKGLNDRLKVQKKMYSQVEDELKQVNANYQKAKSSVKDVEKAYLK
                     LVEANKKEKLALDKSKEALKSSNTELKKAENQYKRTNQRKQDAYQKLKQLRDAEQKLK
                     NSNQATTAQLKRASDAVQKQSAKHKALVEQYKQEGNQVQKLKVQNDNLSKSNDKIESS
                     YAKTNTKLKQTEKEFNDLNNTIKNHSANVAKAETAVNKEKAALNNLERSIDKASSEMK
                     TFNKEQMIAQSHFGKLASQADVMSKKFSSIGDKMTSLGRTMTMGVSTPITLGLGAALK
                     TSADFEGQMSRVGAIAQASSKDLKSMSNQAVDLGAKTSKSANEVAKGMEELAALGFNA
                     KQTMEAMPGVISAAEASGAEMATTATVMASAINSFGLKASDANHVADLLARSANDSAA
                     DIQYMGDALKYAGTPAKALGVSIEDTSAAIEVLSNSGLEGSQAGTALRASFIRLANPS
                     KNTAKEMKKLGIHLSDAKGQFVGMGELIRQFQDNMKGMTREQKLATVATIVGTEAASG
                     FLALIEAGPDKINSYSKSLKNSNGESKKAADLMKDNLKGALEQLGGAFESLAIEVGKD
                     LTPMIRAGAEGLTKLVDGFTHLPGWVRKASVGLALFGAAIGPAVLAGGLLIRTVGSAA
                     KGYASLNRRIAENTILSNTNSKAMKSLGLQTLFLGSTTGKTSKGFKGLAGAMMFNLKP
                     INVLKNSAKLAILPFKLLKNGLGLAAKSLFAVSGGARFAGVALRFLTGPIGATITAIT
                     IAYKVFKTAYDRVEWFRNGINGLGETIKFFGGKIIGGAVRKLGEFKNYLGSIGKSFKE
                     KFSKDMKDGYKSLSDDDLLKVGVNKFKGFMQTMGTASKKASDTVKVLGKGVSKETEKA
                     LEKYVHYSEENSRIMEKVRLNSGQISEDKAKKLLKIETDLSNNLIAEIEKRNKKELEK
                     TQELIDKYSAFDEQEKQNILTRTKEKNDLRIKKEQELNQKIKELKEKALSDGQISENE
                     RKEIEKLENQRRDITVKELSKTEKEQERILVRMQRNRNAYSIDEASKAIKEAEKARKA
                     RKKEVDKQYEDDVIAIKNNVNLSKSEKDKLLAIADQRHKDEVRKAKSKKDAVVDVVKK
                     QNKDIDKEMDLSSGRVYKNTEKWWNGLKSWWSNFREDQKKKSDKYAKEQEETARRNRE
                     NIKKWFGNAWDGVKSKTGEAFSKMGRNANHFGGEMKKMWSGIKGIPSKLSSGWSSAKS
                     SVGYHTKAIANSTGKWFGKAWQSVKSTTGSIYNQTKQKYSDASDKAWAHSKSIWRGTS
                     KWFSNAYKSAKGWLTDMANKSRAKWDNISSTAWSNAKSVWKGTSKWFSNSYKSLKDWT
                     GDMYSRAHDRFDAISSSAWSNAKSVFNGFRKWLSKTYDWIRDIGKDMGRAAADLGKNV
                     ANKAIGGLNSMIGGINKISKAITDKNLIKPIPTLSTGTLAGKGVATDNSGALTQPTFA
                     VLNDRGSGNAPGGGVQEVIHRADGTFHAPQGRDVVVPLGVGDSVINANDTLKLQRMGV
                     LPKFHGGTKKKDWLDQLKGNIGKKAGEFGATAKNTAHNIKKGAEEMVEAAGDKIKDGA
                     SWLGDKIGDVWDYVQHPGKLVNKVMSGLNINFGGGANATVKIAKGAYSLLKKKLVDKV
                     KSWFEDFGGGGDGSYLFEYPIWQRFGRYTGGLNFNGGRHYGIDFGMPSGTNVYAVKGG
                     IADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVR
                     GAHLHFQLMQGSHPGNDTAKDPEKWLKSLKGSGVRSGSGVNKAASAWAGDIRRAAKRM
                     GVNVTSGDVGNIISLIQHESGGNAGITQSSALRDINVLQGNPAKGLLQYIPQTFRHYA
                     VRGHNNIYSGYDQLLAFFNNRYWRSQFNPRGGWSPSGPRRYANGGLITKHQLAEVGEG
                     DKQEMVIPLTRRKRAIQLTEQVMRIIGMDGKPNNITVNNDTSTVEKLLKQIVMLSDKG
                     NKLTDALIQTVSSQDNNLGSNDAIRGLEKILSKQSGHRANANNYMGGLTN"
     gene            14798..15622
                     /locus_tag="PF788_001091"
     CDS             14798..15622
                     /locus_tag="PF788_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HDG6303361.1"
                     /translation="MQSFVKIIDGYKEEVITDFNQLIFLDARAESPNTNDNSVTINGV
                     DGILPGAISFAPFSLVLRFGYDGIDVIDLNLFEHWFRSVFNRRHPYYVITSQMPGVKY
                     AVNTANVTSNLKDGSSTEIEVSLNVYKGYSESVNWTDSEFLFDSNWMFENGIPLDFTP
                     KYTHTSNQFTIWNGSTDTINPRFKHDLKILINLNASGGFELVNYTTGDIFKYNKSIDK
                     NTDFVLDGVYAYRDINRVGIDTNRGIITLAPGKNEFKIKGDVSDIKTTFKFPFIYR"
     gene            15631..17214
                     /locus_tag="PF788_001092"
     CDS             15631..17214
                     /locus_tag="PF788_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDG6303362.1"
                     /translation="MDYHDHLSVMDFNELICENLLDVDYGSFKEYYELNEARYITFTV
                     YRTTHNSFVFDLLICENFIIYHGEKYTIKQTAPKVEGDKVFIEVTAYHIMYEFQNHSV
                     ESNKLDDDSSETGKTPEYSLDEYLRYGFANQKTSVKMTYKIIGDFKRKVPIDELGNKN
                     GLEYCKEAVDLFGCIIYPNDTEIGFYSPETFYQRSEKVIRYQYNTDTVSATVSTLELR
                     TAIKVFGKKYTAEEKKNYNPIRTTDIKYSNGFIKEGTYRTETIGSKATINFDCKYGNE
                     TVRFTIKKGSQGGIYKLILDGKQIKQISCFAKSVQSETIDLIKNIDKGKHVLEMIFLG
                     EDPKNRIDISSNKKAKPCMYVGTEKSTVLNLIADNSGRNQYKAIVDYVADSAKQFGIR
                     YANTQTNEDIETQDKLLEFAKKQINDTPKTELDVNYIGYEKIEPRDSVFFVHELMGYN
                     TELKVVKLDRSHPFVNAIDEVSFSNEIKDMVQIQQALNRRVIAQDNRYNYQANRINHL
                     YTSTLNSPFETMDIGSVLI"
     gene            17214..17504
                     /locus_tag="PF788_001093"
     CDS             17214..17504
                     /locus_tag="PF788_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303363.1"
                     /translation="MATEEVKIKALLENDKQYFPATHWKAINGIPYAGSSDIDGLPQD
                     GIISVDDKNKLDKLKIGEAGIIQNSIVQKSPNGKLWKITVDDSGKLGTVLFY"
     gene            17520..19430
                     /locus_tag="PF788_001094"
     CDS             17520..19430
                     /locus_tag="PF788_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303364.1"
                     /translation="MENLYLIKDLGALAGRDYRAKEIQNLQRIEQFALGLTTEFKLHQ
                     KAKTMQHFAEQIYYNGRSQAAVNKSLQSQINALVVAPRNNSANEIVQARVNVNGETFD
                     TLKEHLDDWETKTQINKEETIRELNKTKQEILDIEYRFEPDKQEFLFVTELAPLTNAV
                     MQSFWFDNRTGIVYMTQARNNGYMLSRLRPNGQFIDSSLIVGGGHGTHNGYRYIDDEL
                     WIYSFILNGNNENTLVRFKYTPNVEISYGKYGMQDVFTGHPEKPYITPVINEKENKIL
                     YRIERPRSQWELENSMNYIEIRSLDDVDKNIDKVLHKISIPMRLTNETQPMQGVTFDE
                     KYLYWYTGDSNPNNRNYLTAFDLETGEEAYQVNADYGGTLDSFPGEFAEAEGLQIYYD
                     KDSGKKALMLGVTVGGDGNRTHRIFMIGQRGILEILHSRGVPFIMSDTGGRVKPLPMR
                     PDKLKNLGMLTEPGLYYLYTDHTVQIDDFPLPREWRDAGWFLEVKPPQTGGDVIQILT
                     RNSYARNMMTFERVLSGRTGDISDWNYVPKNSGKWERVPSFITKMSDINIVGMSFYLT
                     TDDTKRFTDFPTERKGVAGWNLYVEASNTGGFVHRLVRNSVTASAEILLKNYDSKTSS
                     GPWTLHEGRIIS"
     gene            19430..20896
                     /locus_tag="PF788_001095"
     CDS             19430..20896
                     /locus_tag="PF788_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate upper protein"
                     /protein_id="HDG6303365.1"
                     /translation="MSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNIIK
                     NNQPLLLSEENIKARIAIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQV
                     SVAELGNSDVVVVERTITFNVEKSLFSKIPSETKLHYIVEFQELEKTIMDRAKAMDEA
                     IKNGEDYASLIEKAKEKGLSDIQIAKSSSIDELKQLANSRISDLENKAQAYSRTFDEQ
                     KRYMDEKHEAFKQSVNSGGLVTSGSTSNWQKAKITKDDGKIMQITGFDFNNPEQRIGD
                     STQFIYVSQAINYPRDVSTNGTVEYLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEW
                     SELAINDYNTPFETVQSAQSKANMAESNAKLYADDKFNKRYSVIFDGTANGVGSTLYL
                     NESLDQFILLIFYGTFPGGDFTEFGSPFGGGKISLNPSNLPDGDGNGGGVYEFGLTKS
                     SRTSLTISNDVYFDLGSQRGSGANANRGTINKIIGVRK"
     gene            20896..21285
                     /locus_tag="PF788_001096"
     CDS             20896..21285
                     /locus_tag="PF788_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2977 domain-containing protein"
                     /protein_id="HDG6303366.1"
                     /translation="MQILVNKRNEIISYAIIGGFEEGIDIENLPENFSQVFRPKAFKY
                     SNGEIVFNEDYSEEKDDLHQQIDSEEQNTVASDDILRKMVASMQKQVVQSTKLSMQVN
                     RQNALMAKQLVTLNKKLEEVKGETENA"
     gene            21278..21442
                     /locus_tag="PF788_001097"
     CDS             21278..21442
                     /locus_tag="PF788_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XkdX family protein"
                     /protein_id="HDG6303367.1"
                     /translation="MLKLISPTFEDIKTWYQLKEYSKEDIAWYVDMEVIDKEEYAIIT
                     GEKYPENLES"
     gene            21488..21787
                     /locus_tag="PF788_001098"
     CDS             21488..21787
                     /locus_tag="PF788_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2951 domain-containing protein"
                     /protein_id="HDG6303368.1"
                     /translation="MFGFTKRHEQDWRLTRLEENDKTMFEKFDRIEDSLRTQEKIYDK
                     LDRNFEELRRDKEEDEKNKEKNAKNIRDIKMWILGLIGTILSTFVIALLKTIFGI"
     gene            21923..22225
                     /locus_tag="PF788_001099"
     CDS             21923..22225
                     /locus_tag="PF788_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HDG6303369.1"
                     /translation="MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVV
                     ALYTTYKDNPTSQEGKWANQKLKKYKAESKYRKATGQAPIKEVMTPTNMNDTNDLG"
     gene            22236..23690
                     /locus_tag="PF788_001100"
     CDS             22236..23690
                     /locus_tag="PF788_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDG6303370.1"
                     /translation="MLITKNQAEKWFDNSLGKQFNPDLFYGFQCYDYANMFFMLATGE
                     RLQGLYAYNIPFDNKAKIEKYGQIIKNYDSFLPQKLDIVVFPSKYGGGAGHVEIVESA
                     NLNTFTSFGQNWNGKGWTNGVAQPGWGPETVTRHVHYYDNPMYFIRLNFPNNLSVGNK
                     AKGIIKQATTKKEAVIKPKKIMLVAGHGYNDPGAVGNGTNERDFIRKYITPNIAKYLR
                     HAGHEVALYGGSSQSQDMYQDTAYGVNVGNKKDYGLYWVKSQGYDIVLEIHLDAAGES
                     ASGGHVIISSQFNADTIDKSIQDVIKNNLGQIRGVTPRNDLLNVNVSAEININYRLSE
                     LGFITNKNDMDWIKKNYDLYSKLIAGAIHGKPIGGVVASEVKAPVKNEKNPPVPAGYT
                     LDKNNVPYKKEQGNYTVANVKGNNVRDGYSTNSRITGVLPNNTTITYDGAYCINGYRW
                     ITYIANSGQRRYIATGEVDIAGNRISSFGKFSAV"
BASE COUNT         9132 a         3261 c         4840 g         6710 t
ORIGIN      
        1 aattttatag ccccctgccc atcggcttaa aatgtttttt cgccgggtac cggcgggggc
       61 ccttcgcttg caacgcggat aaacttttat gaaagggggt ctttatatga aattaacaaa
      121 aaaacagctg aaagaatata tagaggatta taaaaaatct gatgacatat taattaattt
      181 gtatatagaa acgtatgaat tttattgtcg gttaagagat gaacttaaaa atagtgattt
      241 gatgatagag catacaaaca aggctggtgc gagcaatatt gttaagaatc cattaagcat
      301 agaactgaca aaaacagttc aaacactaaa taacttactc aagtctatgg gtttaactgc
      361 agcacaaaga aaaaagatag ttcaagaaga aggtggattc ggtgactatt aaagttttaa
      421 atgaaccttc accaaaacta ttaacaacat ggtatgcaga gcaagtcact caagggaaaa
      481 taaaaacaag caaatatgtt aaaaaagaat gtgagagaca ccttagatat ctagaaaatg
      541 gaggtaaatg ggtatttgat gaagaattag cgcaccgtcc tattcgattc atagaaaagt
      601 tttgtaaacc ttccaaagga tctaaacgtc aacttgtatt acaaccatgg caacatttta
      661 ttattggcag tttgtttggt tgggttcata aagaaacaaa actgcgcagg tttaaagaag
      721 ctttgatatt tatggggcga aaaaatggta aaacaactac tatatctggt gttgctaact
      781 atgctgtttc tcaagatgga gaaaacggcg ctgaaatcca tcttttagca aacgtaatga
      841 aacaagctag aatattattc gatgaatcta aggcgatgat aaaagctagc ccaaagcttg
      901 ataaaaattt cagaacatta agagatgaaa tccattatga cgcaacgata tcaaaaatta
      961 tgccccaagc atcagatagc gataagttag atggattgaa tacacacatg gggatttttg
     1021 atgaaattca tgaatttaaa gactataaat tgatttcagt tataaaaaac tcaagagctg
     1081 caaggttaca acctcttctc atctacatta cgacagcagg gtatcaatta gatggtccac
     1141 ttgttgatat ggtagaagcg ggaagagaca ccttagatca aatcatagaa gacgaaagaa
     1201 ctttttatta tttagcatct ttggatgatg acgatgatat taatgattcg tcgaactgga
     1261 taaaagcaaa tcccaactta ggtgtctcta taaatttaga tgagatgaaa gaagagtggg
     1321 aaaaagctaa gagaacacca gctgaacgtg gagattttat aaccaaaagg tttaatatct
     1381 ttgctaataa tgacgagatg agttttattg attacccaac actccaaaaa aataatgaaa
     1441 ttgtttcttt agaagagctg gaaggcagac catgcacgat tggttatgat ttatcagaaa
     1501 cagaggactt tacagccgcg tgtgctactt ttgcgttaga taatggtaaa gttgcagttt
     1561 tatcgcattc atggattcct aagcacaaag ttgaatattc taacgaaaaa ataccctata
     1621 gagaatggga agaagatggc ttattaacag tgcaagataa gccttatatt gactaccaag
     1681 atgttttaaa ttggataatt aagatgaatg agcattatgt agtagaaaaa attacttatg
     1741 atagagcgaa cgcattcaaa ctaaatcaag agttaaaaaa ttacgggttt gaaacggaag
     1801 aaacaagaca aggagctttg accttgagcc ctgcattgaa ggatttaaaa gaaatgtttt
     1861 tagatgggaa aataatattt aataataatc ctttaatgaa atggtatatc aataatgttc
     1921 agttgaaact agacagaaac ggaaactggt tgccgtctaa gcaaagcaga tatcgtaaaa
     1981 tagatggctt tgcagcattt ttaaacacat atacagatat tatgaataaa gttgtttctg
     2041 acaagggtga aggaaacata gaatttatta gtattaaaga tataatgcgt taaggaggtg
     2101 aatgttatcg caaaagagaa tattgtcaca cgcataaaga aaaaattgat agacaattgg
     2161 attgatcagt cagcttctaa gctttatgac tttagcccat ggaaaaataa atctttttgg
     2221 ggtgtaatca ataatacgct tgaaactaat gaaacgatat tttcagctat tacaaagtta
     2281 tctaattcga tggctagttt gcccttgaaa atgtatgaag attataaagt agttaataca
     2341 gaagtatctg atttacttac agtgtcaccg aataattctc tgagcagttt tgattttatt
     2401 aatcaaattg aaacaatcag aaatgaaaaa ggtaatgcat atgtgctaat tgaacgagac
     2461 atctatcatc aaccatcaaa gcttttctta ttaaatccag atgttgttga aatgttaatt
     2521 gaaaaccaat cacgtgaact ttattattcc attcatgctg caactggaaa taaattgatt
     2581 gttcataata tggacatgtt gcattttaaa cacatcgtgg catctaatat ggtgcaaggc
     2641 attagtccga ttgatgtgtt gaagaataca actgattttg ataatgcagt aagaaccttt
     2701 aatcttacag aaatgcaaaa acctgattct ttcatgctta aatatggttc caatgtaggt
     2761 aaagaaaaaa ggcagcaagt gttagaagat ttcaaacagt actatgaaga aaacggtgga
     2821 atattattcc aagagcctgg tgttgaaatc gaaccgttac ctaaaaaata tgtctctgaa
     2881 gatatagtgg caagcgagaa tttaacaaga gaaagagtag ctaacgtttt tcaattgccc
     2941 tcagtattct taaatgcaag atcaaataca aatttcgcga aaaatgaaga gttaaacaga
     3001 ttttacttgc agcatacctt attgccaatc gtcaaacagt atgaagaaga atttaatcgg
     3061 aaactactta ctaaaacaga cagagaaaaa aataggtatt ttaaatttaa cgttaaatct
     3121 tatttaaggg ctgatagtgc aacacaagca gaagtgtact ttaaagcagt tcgtagtggt
     3181 tactacacta taaatgacat tagagagtgg gaagatttac caccagttga aggtggagat
     3241 aagccgctaa taagcggtga tttataccca attgacacgc cacttgaatt aagaaaatct
     3301 ttgaaaggtg gtgataaaaa tgtcaatgaa agctaagtat tttcaaatga aaagaaaatc
     3361 aaaaagtaaa ggtgaaatat ttatttatgg tgatattgta agtgataaat ggtttgaaag
     3421 tgatgtaact gctacagatt tcaaaaataa actagatgaa ctaggagaca tcagtgaaat
     3481 agatgttcat ataaattcat ctggaggcag tgtatttgaa gggcatgcaa tatacaatat
     3541 gctaaaaatg catcctgcaa aaattaatat ctatgtcgat gccttagcgg catcaattgc
     3601 tagtgttatc gctatgagtg gtgacactat ttttatgcac aaaaatagtt ttttaatgat
     3661 tcataattca tgggttatga ctgtaggtaa tgcagaagaa ttaagaaaga cagcggattt
     3721 acttgaaaaa acagatgctg ttagtaattc agcttattta gataaagcaa aagatttaga
     3781 tcaagaacac ttaaaacaga tgttagatgc agaaacttgg cttactgcag aagaagcctt
     3841 gtctttcggc ttgatagatg aaattttagg agctaatgaa atagctgcta gtatctctaa
     3901 agagcaatat aagcgtttcg agaacgtccc agaagattta aagaaagatg tagacaaaat
     3961 cactaaaatt gatgatgtag atacatctga attggttgaa acacctaaag aaagtatgtc
     4021 actagaagaa aaagaaaaaa gagaaaaaat taaacgcgaa tgcgaaattt taaaaatgac
     4081 aatgaattat taggaggaaa tgaaatgccg acattatatg aattaaaaca atccttaggt
     4141 atgattggac aacaattaaa aaataaaaat gatgaattga gtcagaaagc aacagatcca
     4201 aatattgata tggaagacat caaacaacta gaaacagaaa aagcaggttt acaacaaaga
     4261 tttaacattg ttgaaagaca agtgcaagac attgaagaga aagaaaaagc gaaagttaaa
     4321 gataaaggag aagcttatca atctttaagt gataatgaga agatggttaa agctaaggca
     4381 gagttttatc gtcacgcgat tttaccaaat gaatttgaaa aaccttcaat ggaggcacaa
     4441 cgtttattac acgctttacc aacaggaaat gattcaggtg gagataagct cttaccaaaa
     4501 acactttcta aagaaattgt ttcagaacca tttgctaaaa accaattacg tgaaaaagct
     4561 cgtctaacta acattaaagg tttagagatt ccaagagttt catacacttt agacgatgat
     4621 gatttcatta cagacgtaga aacagcaaaa gaattaaaag caaaaggtga tacagtcaag
     4681 ttcactacta ataaattcaa agtatttgct gcaatttcag atactgtaat tcatggatca
     4741 gatgtagatt tagtaaactg ggttgaaaac gcactacaat caggattagc agctaaagag
     4801 cgtaaagatg ccttagcagt aagtcctaaa tctggattag aacacatgtc attttataat
     4861 ggatctgtta aagaagttga gggagcagac atgtatgatg ctattattaa cgctttagca
     4921 gatttacatg aagattatcg tgataacgca acaatttata tgcgatatgc agattatgtc
     4981 aaaattatta gtgttctttc aaatggaaca acaaatttct ttgacacacc agcagaaaaa
     5041 gtatttggca aaccagtagt atttacagat gcagcagtta aacctattgt gggagatttc
     5101 aattattttg gaattaacta tgatggaaca acttatgaca ctgataaaga tgttaaaaaa
     5161 ggcgaatatt tgtttgtatt aacagcatgg tatgatcagc aacgtacatt agacagtgca
     5221 ttcagaattg caaaagcaaa agaaaataca ggtccattac ccagctaagc cccaaaaggt
     5281 taatgtaaca gctaaggcta aatcagctgt aatatcagcc gaataggggt gatgaaatga
     5341 gtttagaaga aattaaattg tggttgagaa ttgactataa tttcgaaaat gatttaattg
     5401 aaggtctcat tcaatcggct aagtctgaat tactattaag tggggttcca gattatgaca
     5461 aagatgactt ggaatacccg cttttttgta cagcgattaa atatatcatt gcaagagatt
     5521 atgaaagtcg tggatactca aatgaccaat ctagaagcaa ggtgtttaat gaaaaaggat
     5581 tgcaaaaaat gattttgaaa ttaaaaaagt ggtaggtgat ttttaaatgg aatttaatga
     5641 atttaaagat cgcgcgtatt tttttcaata tataaacaaa ggaccatatc cagatgaaga
     5701 ggaaaaaatg aaattgtata gttgcttttg taaaatttat aatccttcta tgaaagatag
     5761 agaaatttta aaagcgactg aatcaaaatc aggattaacc ataattgtca ggtcttctaa
     5821 aactgaatat ctaccacaaa caaatcactt agttaaaatt gacagtgcat tatattccga
     5881 taaattattc aacattgtag aaataagaat tgatacacca gatattggct ataatacagt
     5941 ggttttatca gaaaaatgag tgtagaaatt aaagggatac ctgaagtgtt gaataaatta
     6001 gaatcggtat acggtaaaca agcaatgcag gctaagagtg ataaagcttt aaatgaagca
     6061 tctgaatttt ttataaaggc tttaaagaaa gagttcgaga gctttaaaga tacgggtgcc
     6121 agtatagaag aaatgactaa atctaagcct tatacaaaag ttggcagtca agaaagggct
     6181 gttttaattg aatgggtagg ccctatgaat cgcaaaaaca ttattcactt gaatgaacat
     6241 ggttatacaa gagatggaaa aaaatataca ccaagaggtt ttggagttat tgcaaaaaca
     6301 ttagctgcta gcgaacgtaa gtatagagaa attataaaaa aggagttggc cagataaatg
     6361 aatatattaa acaccataaa aggaatttta ttatctgatg cagagctcaa aacacatata
     6421 aattctagaa tatactatta caaagtcact gaaaacgctg aaacttccaa accctttgtt
     6481 gttattacac ctgtttatga tttgccttca gactttatgt ctgataaata tctcagtgaa
     6541 gaatacttaa ttcaaataga tgtagaatct tcaaataatc agaaaacaat tgatataaca
     6601 aaacgaataa gatacctgtt atatcaacaa aatttaattc aagcatctag tcagttagat
     6661 gcttattttg aagaaactaa acgttatgtg atgtcgagac gatatcaagg catacccaaa
     6721 aatatatatt ataaaaatca gcgcatcgaa taggtgtgct ttttaatttt taaggaggaa
     6781 ataagcaatg gcagaaggac aaggttctta taaagtaggt tttaaaagat tatacgttgg
     6841 agtttttaac ccagaagcaa caaaagtagt taaacgcatg acatgggaag atgaaaaagg
     6901 tggtacagtt gacctaaata tcacaggttt agcaccagat ttagtagata tgtttgcatc
     6961 taacaaacgt gtatggatga aaaaacaagg tactaatgaa gttaagtctg acatgagtat
     7021 tttcaatatt ccaagtgatg atttaaacac agttattgga cgtactaaag ataaaaatgg
     7081 tacatcttgg gtaggagaga atacaagagc accgtatgta acagtaattg gcgaatcgga
     7141 agatggttta acaggtcagc cggtatatgt agccttactt aaaggtactt ttagtttaga
     7201 ttcaattgaa tttaaaacac gaggtgaaaa agcagaagcc ccagaaccta caaaattaac
     7261 aggtgactgg atgaatagaa aagttgatgt tgatggaacg tcacaaggta ttgtatacgg
     7321 ttatcatgaa ggtaaagaag gagaagcaga attcttcaaa aaagtattcg ttggatacac
     7381 ggacagtgaa gatcattcag aggattctgc aggttcgtta cccagctaat ccccaaaatg
     7441 ttgaagtagc agttaattca aaatctgcaa cagtttcagc agaatagggg ctttcaaaat
     7501 aaatcaaagg agaataattt atgactaaaa ctttaaaggt ttataaagga gacgacgtcg
     7561 tagcttctga acaaggtgaa ggcaaagtgt cagtaacttt atctaattta gaagcggata
     7621 caacttatcc aaaaggtact taccaagtgg catgggaaga aaatggtaaa gaatctagta
     7681 aagttgatgt acctcaattc aaaaccaatc caattctagt ctcaggcgta tcatttacac
     7741 cagaaactaa atcaattatg gtaaataccg atgacaatgt tgagccaaac attgcaccaa
     7801 gcacagcaac gaataaaata ttgaaatata caagtgaaca tccagaattt gttactgtag
     7861 atgaaaatac aggagcaatt cacggtgtag ctgaaggtac ttcagtaatc actgctatgt
     7921 ctactgatgg aagcgataag tcaggacaaa tttcagtgac agtaacaaac ggatagggat
     7981 ttaaggcgca gtatatctgc gtctttttta tttgaataaa aggagctaat acaatgatta
     8041 aatttgaaat taaagatcgt aaaacaggaa aaacagagag ctatacaaaa gaagatgtaa
     8101 caatgggcga agcagaaaaa tgctatgagt atttagaatt agtaaatcaa gagaataaaa
     8161 aagaagcacc taacgcaaca aaaatgagac aaaaagagcg acagttatta gtagatttat
     8221 ttaaagatga aggattgact gaagaagatg ttctgaacaa gatgagtact aaaacttata
     8281 caaaagcctt acaagatata tttcgagaaa tcaatggtga agatgaagaa gattcagaaa
     8341 ctgaaccaga agagatggga aagacagaag aacaatctca ataaaagaca ttttatcgaa
     8401 cattaagaaa atacaacgtt tctgtatgga gcagtatggg tggacattaa ctgaagtcag
     8461 aaaacagccg tatgtaaaac ttttagaaat acttaatgaa gagaataaag aagagactga
     8521 agaaaaacaa agtgaacaaa aagtcattac aggtacggat ttaagaaaac tttttggaag
     8581 ctagaaagga ggttaatatg aatgaaaaag tagaaggcat gaccttggag ctgaaattag
     8641 accatttagg tgtccaagaa tgcatgaaag gtttaaagcg acaattaggt gttgttaata
     8701 gtgaaatgaa agctaatctg tcagcatttg ataagtctga aaaatcaatg gaaaaatatc
     8761 aggcgagaat taaggggtta aatgataggc ttaaagttca aaaaaagatg tattctcaag
     8821 tagaagatga gcttaaacaa gttaacgcta attaccaaaa agctaaatcc agtgtaaaag
     8881 atgttgagaa agcatattta aagttagtag aagccaataa aaaagaaaaa ttagctcttg
     8941 ataaatctaa agaagcctta aaatcatcga atacagaact taaaaaagct gaaaatcaat
     9001 ataaacgtac aaatcaacgt aaacaagatg cgtatcaaaa acttaaacag ttgagagatg
     9061 cagaacaaaa gcttaagaat agtaaccaag ctactactgc acaactaaaa agagcaagtg
     9121 acgcagtaca gaagcagtcc gctaagcata aagcacttgt tgaacaatat aaacaagaag
     9181 gcaatcaagt tcaaaaacta aaagtgcaaa atgacaatct ttcaaaatca aatgataaaa
     9241 ttgaaagttc ttacgctaaa actaatacta aattaaagca aacagaaaaa gaatttaatg
     9301 atttaaacaa tactattaag aatcatagcg ctaatgtcgc aaaagctgaa acagctgtta
     9361 ataaagaaaa agctgcttta aataatttgg agcgttcaat agataaagct tcatccgaaa
     9421 tgaagacttt taacaaagaa caaatgatag ctcaaagtca tttcggtaaa cttgcaagtc
     9481 aagcggatgt catgtcaaag aaatttagtt ctattggaga caaaatgact tccctgggac
     9541 gtacaatgac gatgggcgta tctacaccaa ttactttagg gttaggtgca gcattaaaaa
     9601 caagtgcaga ctttgaaggc caaatgtctc gagttggagc gattgcgcaa gcaagcagta
     9661 aagacttgaa aagcatgtct aatcaagcag ttgacttagg agctaaaacc agtaaaagtg
     9721 ctaacgaagt tgctaaaggt atggaagaat tggcagcttt aggctttaat gccaaacaaa
     9781 caatggaggc tatgccaggt gttatcagtg cagcagaagc aagtggtgca gaaatggcta
     9841 caactgcaac tgtaatggct tcagcgatta actctttcgg tttaaaagca tctgatgcaa
     9901 atcatgttgc tgatttactt gcgagatcag caaatgatag tgctgcagat attcagtaca
     9961 tgggagatgc attgaagtat gctggtactc ctgcaaaagc attaggagtt tcaatagagg
    10021 acacttccgc agcaattgaa gttttatcta actcaggttt agagggttct caagcaggta
    10081 ctgccctaag agcttcattt atcaggctag ctaatccaag taaaaataca gctaaggaaa
    10141 tgaaaaaatt aggtattcat ttgtctgatg ctaaaggtca atttgttggc atgggtgaat
    10201 tgattagaca gttccaagat aatatgaaag gcatgacgag agaacaaaaa ctagctacag
    10261 tggctacaat agttggtact gaagcagcaa gtggattttt agccttgatt gaagcgggac
    10321 cagataaaat taatagctat agtaaatcct taaagaattc caatggcgaa agtaaaaaag
    10381 cagcagattt gatgaaagat aatctcaaag gcgctctgga acaattaggt ggcgcttttg
    10441 aatcattagc aatcgaagtc ggtaaagatt taacgcctat gattagagca ggagcggaag
    10501 gtttaacaaa attagttgat ggatttacac atctccctgg ttgggttaga aaagcttcag
    10561 taggattagc actttttggt gcagcaattg gacctgcagt tcttgctgga gggttattaa
    10621 tacgtacagt tggaagtgct gctaaaggat atgcgtcatt aaatagacgt attgctgaaa
    10681 atacaatcct ttcaaatact aattcaaaag caatgaaatc tttaggtctt caaacattat
    10741 ttcttggttc tacaacagga aaaacgtcaa aaggctttaa agggttagcc ggagctatga
    10801 tgtttaattt aaaacctata aatgttttga aaaattctgc aaagctagca attttaccgt
    10861 tcaaactttt gaaaaacggt ttaggattag ctgcaaaatc tttatttgca gtaagtggag
    10921 gcgcaagatt tgcgggtgta gccttaaggt ttttaacagg acctataggt gctacaataa
    10981 ctgctattac aattgcgtat aaagttttta aaaccgcata tgatcgtgtg gaatggttca
    11041 gaaacggtat taacggttta ggagaaacta taaagttttt tggtggtaaa attattggcg
    11101 gcgctgttag aaagctagga gagtttaaaa actatcttgg aagtatcggc aaaagcttca
    11161 aagaaaagtt ttcaaaagat atgaaagatg gttataaatc attaagcgac gatgaccttc
    11221 tcaaagtagg agtcaacaag tttaaaggat ttatgcaaac catgggcaca gcttctaaaa
    11281 aagcgtctga tactgtaaaa gtgttaggga aaggtgtttc aaaagaaaca gaaaaagctt
    11341 tagaaaaata tgtgcattat tctgaagaaa atagcagaat catggaaaaa gtacgtttaa
    11401 actcgggtca gatatcagaa gacaaagcaa aaaaactttt gaaaattgaa acggatttat
    11461 ctaataacct tatagctgaa atagaaaaaa gaaataaaaa ggaactcgaa aaaactcaag
    11521 aacttattga taagtatagt gcattcgatg aacaagaaaa gcaaaacatt ttaactcgaa
    11581 ctaaagaaaa aaatgacttg cgaattaaaa aagagcaaga actcaatcag aaaatcaaag
    11641 aattgaaaga aaaagctttg agtgatggtc agatttcaga aaatgaaaga aaagaaattg
    11701 aaaagcttga aaatcaaaga cgtgatatca ctgttaaaga attgagtaag actgaaaaag
    11761 agcaagagcg tattttagta agaatgcaaa gaaacagaaa tgcttattca atagacgaag
    11821 cgagcaaagc aattaaagaa gcagaaaaag caagaaaagc aagaaaaaaa gaagtggaca
    11881 agcaatatga agatgatgtc attgctataa aaaataacgt caacctttct aagtctgaaa
    11941 aagataaatt gttagctatt gctgatcaaa gacataaaga tgaagtaaga aaagcaaaat
    12001 ctaaaaaaga tgctgtagta gatgttgtta aaaagcaaaa taaagatatt gataaagaaa
    12061 tggatttatc cagtggacgt gtatataaaa atactgaaaa gtggtggaat ggccttaaaa
    12121 gttggtggtc taactttaga gaagaccaaa agaaaaaaag cgataaatac gctaaagaac
    12181 aagaagaaac agctcgtaga aacagagaaa atataaagaa atggtttgga aatgcttggg
    12241 acggcgtaaa aagtaaaact ggcgaagcct ttagtaaaat gggcagaaat gctaatcatt
    12301 ttggcggcga aatgaaaaaa atgtggagcg gaatcaaagg gattccaagc aaattaagtt
    12361 caggttggag ctcagccaaa agttctgtag gataccacac taaggctata gctaatagta
    12421 ctggtaaatg gtttggaaaa gcttggcaat ctgttaaatc gacaacagga agtatttaca
    12481 atcaaactaa gcaaaagtat tcagatgctt cagataaagc ttgggcgcat tcaaaatcta
    12541 tttggagagg cacatcaaaa tggtttagca atgcatataa aagtgcaaag ggctggctaa
    12601 cggatatggc taataaatct cgcgcgaaat gggataatat ttctagtaca gcttggtcga
    12661 atgcaaaatc cgtttggaaa ggaacatcga aatggtttag taactcatac aaatctttaa
    12721 aagattggac tggggatatg tattcaagag cccacgatcg ttttgatgca atttcaagtt
    12781 cggcatggtc taacgctaaa tcagtattta atggttttag aaaatggcta tccaaaacat
    12841 atgattggat tagagatatt ggtaaagaca tgggaagagc tgcggctgat ttaggtaaaa
    12901 atgttgctaa taaagctatt ggcggtttga atagcatgat tggcggtatt aataaaatat
    12961 ctaaagccat tactgataaa aatctcatca agccaatacc tacattgtct actggtactt
    13021 tagcaggaaa gggtgtagct accgataatt cgggagcatt aacgcaaccg acatttgctg
    13081 tattaaatga tagaggttct ggaaacgccc caggtggtgg agttcaagaa gtaattcaca
    13141 gggctgacgg aacattccat gcaccccaag gacgagatgt ggttgttcca ctaggagttg
    13201 gggatagcgt aataaatgct aatgacactc tgaagttaca gcgtatgggt gttttaccaa
    13261 agtttcatgg aggtacgaaa aagaaagatt ggctagacca acttaaaggt aatataggta
    13321 aaaaagcagg agaatttgga gctacagcta aaaacacagc gcataatatc aaaaaaggtg
    13381 cagaagaaat ggttgaagca gcaggcgata aaatcaaaga tggtgcatct tggttaggcg
    13441 ataaaatcgg cgatgtgtgg gattacgtac aacatccagg gaaactagta aataaagtaa
    13501 tgtcaggttt aaatattaat tttggaggcg gagctaacgc tacagtaaaa atagctaaag
    13561 gcgcatactc attgctcaaa aagaaattag tagacaaagt aaaatcgtgg tttgaagatt
    13621 tcggtggtgg aggcgatgga agctatctat ttgaatatcc aatctggcaa agatttggac
    13681 gctacacagg tggacttaac tttaatggcg gtcgtcacta tggtatagac tttggtatgc
    13741 cttctggaac aaacgtttat gccgttaaag gtggtatagc agataaggta tggactgatt
    13801 acggtggcgg taattctata caaattaaga ctggtgctaa tgaatggaac tggtatatgc
    13861 atttatctaa gcaattagca agacaaggcc aacgtattaa agctggtcaa ctgataggga
    13921 aatcaggtgc tacaggtaat ttcgttagag gagcacactt acatttccaa ttgatgcaag
    13981 ggtcacatcc agggaatgat acagctaaag atccagaaaa atggttgaag tcacttaaag
    14041 gtagtggcgt tcgaagtggt tcaggtgtta ataaggctgc atctgcttgg gcaggcgata
    14101 tacgtcgtgc agcaaaacga atgggtgtta atgttacttc gggtgatgta ggaaatatta
    14161 ttagcttgat tcaacacgaa tcaggaggaa atgcaggtat aactcaatct agtgcgctta
    14221 gagacatcaa cgttttacag ggcaatccag caaaaggatt gcttcaatat atcccacaaa
    14281 catttagaca ttatgctgtt agaggtcaca acaatatata tagtggttac gatcagttat
    14341 tagcgttctt taacaacaga tattggcgct cacagtttaa cccaagaggt ggttggtctc
    14401 caagtggtcc aagaagatat gcgaatggtg gtttgattac aaagcatcaa cttgctgaag
    14461 tgggtgaagg agataaacag gagatggtta tccctttaac tagacgtaaa cgagcaattc
    14521 aattaactga acaggttatg cgcatcatcg gtatggatgg caagccaaat aacatcactg
    14581 taaataatga tacttcaaca gttgaaaaat tgttgaaaca aattgttatg ttaagtgata
    14641 aaggaaataa attaacagat gcattgattc aaactgtttc ttctcaggat aataacttag
    14701 gttctaatga tgcaattaga ggtttagaaa aaatattgtc aaaacaaagt gggcatagag
    14761 caaatgcaaa taattatatg ggaggtttga ctaattaatg caatcttttg taaaaatcat
    14821 agatggttac aaggaagaag taataacaga ttttaatcag cttatatttt tagatgcaag
    14881 ggctgaaagt ccaaacacca atgataacag tgtaactatt aacggagtag atggtatttt
    14941 accgggcgca attagttttg cgcctttttc attagtatta aggtttggct atgatggtat
    15001 agatgttata gatttaaatt tatttgagca ttggtttaga tctgtgttta atcgcagaca
    15061 tccttattat gttattactt ctcaaatgcc tggtgttaaa tatgcagtga atacagctaa
    15121 tgttacatct aatttaaaag atggttcttc aactgaaatt gaagtaagtt taaatgttta
    15181 taaagggtat tctgaatcag ttaattggac cgatagcgag ttcttattcg actctaattg
    15241 gatgtttgaa aatggaattc ctcttgattt cacacctaaa tatactcata catcaaatca
    15301 atttactatt tggaacggtt ctactgatac gataaatcca cgattcaagc acgatttgaa
    15361 aatattaatt aatttaaatg cgagtggagg atttgaactg gttaactata caacaggtga
    15421 tatttttaag tacaacaaaa gtatagataa aaacactgat tttgttttag atggtgtgta
    15481 tgcatatcga gatataaata gagtgggaat tgatacaaat agaggcatta taacattagc
    15541 gccaggtaaa aatgaattta agattaaagg agacgtcagt gatattaaaa ctacatttaa
    15601 gtttcctttt atttataggt aggtgattta atggattatc atgatcattt atcagtaatg
    15661 gattttaatg aattgatttg tgaaaattta ctagatgtag attatggttc ttttaaagaa
    15721 tattatgaac tgaatgaagc taggtacatc acctttacag tttatagaac tactcataat
    15781 agttttgttt ttgatttatt gatttgtgaa aacttcataa tttatcatgg tgaaaaatat
    15841 acaattaagc agacagcgcc aaaggttgaa ggtgataaag tttttattga agttacggca
    15901 tatcacataa tgtatgaatt tcaaaatcac tcagtggaat caaataagct tgatgacgac
    15961 agtagcgaaa ctggtaaaac gccagaatac tctttagatg agtacttaag atatggattt
    16021 gcaaatcaaa aaacttcggt caaaatgacc tataaaataa ttggagattt taagcgaaaa
    16081 gtaccgattg acgaattagg taacaaaaac ggcttagaat actgtaaaga agcggtagac
    16141 ctgtttggct gtataattta cccaaatgat acagagattg gtttttattc tcctgaaaca
    16201 ttttatcaaa gaagcgagaa agtgattcga tatcaatata atactgatac tgtatctgca
    16261 actgtcagta cattggaatt aagaacagct ataaaagttt ttggaaaaaa gtatacagct
    16321 gaggaaaaga aaaattataa tcctattaga acaactgaca ttaaatattc aaatggtttt
    16381 ataaaagaag gtacttatcg taccgaaaca attgggtcta aagctactat taactttgat
    16441 tgcaagtatg gtaatgaaac agttagattt acaataaaaa agggctctca aggtggaata
    16501 tataagttga ttttagacgg caagcaaatt aagcaaattt cttgttttgc taagtcggtt
    16561 cagtctgaaa caatagattt aataaaaaat attgataaag gcaagcacgt tttagaaatg
    16621 atatttttag gagaagaccc caaaaataga attgatatat cttcaaataa aaaagctaag
    16681 ccttgtatgt atgttggaac tgaaaaatca acagtcttaa atttaattgc tgataattca
    16741 ggtcgcaatc aatacaaagc aattgtcgac tacgtcgcag atagtgcaaa gcagtttggg
    16801 attcgatatg ctaatacgca aacaaatgaa gatatcgaaa cacaggataa gctgttagaa
    16861 tttgcaaaaa agcaaataaa tgatactcct aagactgaat tagatgttaa ttatataggt
    16921 tatgaaaaaa tagagccaag agatagcgta ttttttgttc atgaattaat gggatataac
    16981 actgaattaa aggttgttaa acttgatagg tcacatccat ttgtaaacgc aatagatgaa
    17041 gtgtctttca gcaatgaaat aaaagatatg gtacaaattc aacaagcact taacagacga
    17101 gttattgcac aagataatag atataactat caagcaaatc gtataaatca tttatacact
    17161 agtactttga attctccttt cgagacaatg gatataggga gtgtattaat ataatggcaa
    17221 cagaagaagt taaaatcaaa gcgctacttg aaaacgataa acagtacttt ccagctacac
    17281 actggaaagc tataaatggg ataccttatg caggcagtag tgatattgat ggattgcctc
    17341 aagacggtat catttcggta gatgataaaa ataaattaga taaattaaaa ataggcgaag
    17401 caggaattat tcaaaatagc attgtacaga aatccccaaa cggtaaattg tggaaaataa
    17461 cagttgacga tagtgggaaa cttggtacag tgctatttta ttagaaagga aggtgcatta
    17521 tggaaaattt gtatttaata aaggatttgg gagctttagc aggtcgagat tatagagcta
    17581 aagaaattca aaacctgcaa agaatagagc aatttgcgct tggcttgaca acagagttta
    17641 agttgcatca gaaagctaaa acaatgcaac acttcgctga gcaaatttat tataatggta
    17701 gatcgcaagc agcagtaaac aaatctttac aaagtcaaat taacgcactt gttgtggcac
    17761 cacgtaataa cagtgctaat gagattgttc aagctcgagt taatgtaaac ggcgaaacct
    17821 ttgacacatt aaaagaacat ttagacgatt gggaaaccaa aactcaaatt aataaagagg
    17881 aaactataag agaattaaat aagaccaaac aagaaattct tgatatcgag tatcgttttg
    17941 aacctgataa gcaagagttt ttatttgtga cagaacttgc acctcttaca aatgcagtaa
    18001 tgcaatcctt ctggtttgat aatagaacag gcatagtata catgacacaa gctagaaata
    18061 atggctatat gctaagtcgt ttaagaccta atggtcaatt tatagacagc tcattgattg
    18121 taggtggggg tcatggtaca cataacggtt atagatatat tgatgatgag ttatggattt
    18181 atagttttat cttaaatggt aataatgaga atacattagt tcgtttcaag tatacgccta
    18241 atgtggaaat tagctatggc aagtatggta tgcaagatgt atttacagga cacccagaaa
    18301 aaccctacat cacccctgtc ataaatgaaa aagaaaataa aattctatac agaattgaga
    18361 gacctagaag tcagtgggaa cttgaaaact caatgaatta tatagagata agaagtttag
    18421 acgatgttga taaaaatatt gataaagttt tgcataaaat cagtatccct atgagactaa
    18481 caaacgaaac ccaaccaatg cagggtgtga cttttgatga aaaatacttg tattggtata
    18541 caggagacag taatccaaat aatagaaact atttaacggc tttcgattta gaaacaggag
    18601 aagaagcgta tcaggttaat gctgactatg gtggaacact agattcattt cctggcgaat
    18661 ttgcggaagc agaaggtttg caaatatact atgacaaaga tagtggtaaa aaagctttga
    18721 tgctaggtgt tactgtcggt ggtgatggaa atagaacaca tcgtattttc atgattgggc
    18781 aaagaggtat tttagaaata cttcactcaa gaggcgttcc ttttatcatg agtgacacag
    18841 gtggtagagt taaaccttta ccaatgaggc ctgataaact taagaatctt gggatgttaa
    18901 cagagccagg tctttactat ttatacactg atcatacagt tcaaatcgat gatttcccat
    18961 taccaagaga atggcgtgat gcaggttggt tcttggaagt taagccacca caaactggcg
    19021 gtgatgtaat tcagatattg acgcgtaata gttatgcaag gaatatgatg acttttgaaa
    19081 gggtgctttc tggaagaact ggagacattt cggactggaa ttatgtgcct aaaaatagtg
    19141 gtaaatggga gagagtacct tcattcatca caaaaatgtc agatattaac atagtaggca
    19201 tgtcgtttta tttaactacg gatgatacaa aacgttttac agattttcca actgaacgta
    19261 aaggggtagc tggttggaac ttatatgtag aagcttcaaa cacaggtggc tttgttcata
    19321 ggctagttcg taatagtgtt acagcatctg ctgagatact attgaaaaat tatgatagta
    19381 aaacaagttc agggccatgg actttacacg aagggagaat tataagttaa tgagtaattt
    19441 agagaaatct gtagctataa atttagaaaa cacagcgcat tatgaaaata tttcaaatct
    19501 agatataact tttagaacag gagagagtga ttcttctgtt cttcttttta atatcattaa
    19561 aaataatcaa ccgttattac tgagtgaaga aaatatcaaa gcacgaatag cgattcgagg
    19621 taaaggagta atggtagttg ctccactaga aatattagat ccatttaaag gtattttaaa
    19681 atttcaatta cctaatgatg taattaaaag agatggaagt tatcaagctc aagtttcggt
    19741 tgcagaatta ggtaattcag acgtggtagt tgtagagaga actatcacat ttaacgttga
    19801 aaaaagtttg tttagcaaga ttccctctga aacaaaacta cactatattg ttgagtttca
    19861 agaattagaa aaaactatta tggatcgcgc gaaagcaatg gacgaggcta taaaaaatgg
    19921 tgaggattat gcgagtctga ttgaaaaagc taaagaaaaa ggtctatcag atattcaaat
    19981 agcaaaatct tcaagtattg atgaattaaa gcaacttgct aatagccgta tatctgattt
    20041 ggaaaataaa gcgcaagcat attcaagaac attcgatgag caaaagcgat atatggatga
    20101 gaaacatgaa gccttcaagc agtcagtgaa tagtggtggt ttagtcacaa gtggttctac
    20161 ttcaaattgg caaaaagcta agattactaa agatgatggt aagataatgc agattactgg
    20221 atttgatttt aataatccag aacaaagaat aggtgattca acccaattta tttatgtttc
    20281 gcaagctata aattatccaa gagatgttag tactaacggt actgtcgaat atttagtagt
    20341 aacttcagat tacaagcgta tgacttatcg accgaacggt acaaataaag tgtttgttaa
    20401 aagaaaagaa gcgggttcat ggtctgagtg gtcagaatta gctattaatg attacaatac
    20461 accttttgaa actgttcaaa gtgcccaatc aaaagctaat atggccgaaa gtaacgctaa
    20521 attatacgca gatgacaagt ttaataaaag gtattcggtt atttttgatg gaacagcaaa
    20581 tggtgtgggc tctacattgt acttaaatga gagtttagac caatttattt tattaatttt
    20641 ttatgggact tttccaggtg gtgactttac agagtttggc agtccttttg gaggaggaaa
    20701 gatttcattg aatccctcaa atcttccaga tggtgatgga aatggtggag gtgtttatga
    20761 gtttggatta actaaatcta gtcgtacatc tttaactata tcaaacgatg tctatttcga
    20821 cttaggaagt caaagaggct ctggtgcgaa cgcaaataga gggacaatta acaaaattat
    20881 aggagtgaga aaataatgca aatattagtt aacaagcgta atgagataat ttcatacgct
    20941 atcattggcg gctttgaaga aggtattgat attgaaaatt taccagaaaa tttctctcaa
    21001 gtttttagac ctaaagcctt taaatattca aatggggaaa tagtttttaa cgaagattat
    21061 tcagaagaaa aagatgactt gcatcaacag attgacagtg aagaacaaaa cacagtcgct
    21121 tctgatgaca tcttacgaaa aatggttgct agtatgcaga aacaagttgt tcaaagtaca
    21181 aagttatcga tgcaagttaa taggcaaaat gcactaatgg caaaacaact tgtgacactt
    21241 aataaaaaat tagaagaggt taaaggagag actgaaaatg cttaaattaa tttcaccaac
    21301 attcgaagat attaaaacat ggtatcaatt gaaagaatat agtaaagaag atatagcgtg
    21361 gtatgtagat atggaagtta tagataaaga ggaatatgca attattacag gagaaaagta
    21421 tccagaaaat ctagagtcat aggttataat cttatggctt tttaatttga ataaagtggg
    21481 tggtgtaatg tttggattta ccaaacgaca cgaacaagat tggcgtttaa cgcgattaga
    21541 agaaaatgat aagactatgt ttgaaaaatt cgacagaata gaagacagtc tgagaacgca
    21601 agaaaaaatt tatgacaagt tagatagaaa tttcgaagaa ctaaggcgtg acaaagaaga
    21661 agatgaaaaa aataaagaga aaaatgctaa aaatattaga gacatcaaga tgtggattct
    21721 aggattaata gggacgattc taagtacatt tgttatagcc ttgttaaaaa ctatttttgg
    21781 catttaaagg aggtgatcac catgcttaag ggaattttag gatatagctt ttggtcgtgt
    21841 ttctggtttg gtaagtgtaa gtaatattta agagtcagtg cttcggcact ggctttttat
    21901 tttggataaa aggagcaaac aaatggatgc aaaagtaata acaagataca tcgtattgat
    21961 cttagcatta gtaaatcaat tcttagcgaa taaaggtata agtccgatac cagtagatga
    22021 agaaagtgtt tcatcgatta tcttaacagt tgttgcttta tatactacat ataaagataa
    22081 tccaacatct caagaaggga aatgggcgaa tcaaaaatta aagaaatata aagctgaaag
    22141 taaatataga aaagcaacag ggcaagcgcc aattaaagaa gtaatgacac ctacgaatat
    22201 gaacgacaca aatgatttag ggtaggtgtt gaccaatgtt gataacaaaa aaccaagcag
    22261 aaaaatggtt tgataattca ttagggaagc agttcaatcc tgatttgttt tatggatttc
    22321 agtgttatga ttacgccaat atgttcttta tgttagcgac aggcgaaagg ctgcaaggtt
    22381 tatatgctta taatatcccg tttgataata aagcaaagat tgaaaaatat ggtcaaataa
    22441 ttaaaaacta tgacagcttt ttaccgcaaa agttggatat tgtcgttttc ccgtcaaagt
    22501 atggtggcgg agctggacac gttgaaattg ttgagagcgc aaatttaaac actttcacat
    22561 catttggtca aaactggaac ggtaaaggtt ggactaatgg cgttgcgcaa cctggttggg
    22621 gtcctgaaac tgtgacaaga catgttcatt attatgacaa tccaatgtat tttattaggt
    22681 taaacttccc taacaactta agcgttggca ataaagctaa aggtattatt aagcaagcga
    22741 ctacaaaaaa agaggcagta attaaaccta aaaaaattat gcttgtagcc ggtcatggtt
    22801 ataacgatcc tggagcagta ggaaacggaa caaacgaacg cgattttata cgtaaatata
    22861 taacgcctaa tatcgctaag tatttaagac atgcaggaca tgaagttgca ttatacggtg
    22921 gctcaagtca atcacaagat atgtatcaag atactgcata cggtgttaat gtaggcaata
    22981 aaaaagatta tggcttatat tgggttaaat cacaggggta tgacattgtt ctagaaatac
    23041 atttagacgc agcaggagaa agcgcaagtg gtgggcatgt tattatctca agtcaattca
    23101 atgcagatac tattgataaa agtatacaag atgttattaa aaataattta ggacaaataa
    23161 gaggtgtaac acctcgtaac gatttactaa atgttaatgt atcagcagaa ataaatatca
    23221 attatcgctt atctgaatta ggttttatta ctaataaaaa tgatatggat tggattaaga
    23281 aaaattacga cttgtactct aaactaatag ctggtgcgat tcatggtaag ccaattggtg
    23341 gagtggtagc tagtgaggtc aaagcgccag ttaaaaacga aaagaatccg ccagtgccag
    23401 caggttatac actcgataag aataatgtcc cttataaaaa agaacaaggc aattacacag
    23461 tagctaatgt taaaggtaat aatgtaagag acggttattc aactaattca agaattacag
    23521 gggtattacc caacaacaca acaattacgt atgacggtgc atattgtatt aatggttata
    23581 gatggattac ttatattgct aatagtggac aacgtcgcta tattgcgacc ggagaggtag
    23641 acatagcagg caaccgaata agcagttttg gtaagtttag tgcagtttga taattgtata
    23701 tgatgaatct taggcaggta cttcggtact tgcctattat ttaaaattaa taaacagtta
    23761 atttttacat gaatatatta aattttaaaa aaacaaacgt ttttagtata taaattattt
    23821 tgtgttcgta ttgtgtgcta tgattaaaaa gttgttatgg tcaactatat cgtggtttta
    23881 tgtttattat caatcaaaat ataaattatt tataatttgt ttggtaatga acgggttttt
    23941 ttc
//
LOCUS       DAMQWL010000030        23142 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.030, whole genome shotgun sequence.
ACCESSION   DAMQWL010000030 DAMQWL010000000
VERSION     DAMQWL010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 23142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23142
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.030"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(285..1283)
                     /gene="sirC"
                     /locus_tag="PF788_001101"
     CDS             complement(285..1283)
                     /gene="sirC"
                     /locus_tag="PF788_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000136636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B ABC transporter permease
                     subunit SirC"
                     /protein_id="HDG6303371.1"
                     /translation="MTEKINKKDNYHLIFALIFLAIVSVVSMMIGSSFIPLQRVLMYF
                     INPNDSMDQFTLEVLRLPRITLAILAGAALGMSGLMLQNVLKNPIASPDIIGITGGAS
                     LSAVVFIAFFSHLTIHLLPLFAVLGGAVAMMILLVFQTKGQIRPTTLIIIGISMQTLF
                     IALVQGLLITTKQLSAAKAYTWLVGSLYGATFKDTIILGMVILAVVPLLFLVIPKMKI
                     SILDDPVAIGLGLHVQRMKLIQLITSTILVSMAISLVGNIGFVGLIAPHIAKTIVRGS
                     YAKKLLMSAMIGAISIVIADLIGRTLFLPKEVPAGVFIAAFGAPFFIYLLLTVKKL"
     gene            complement(1280..2275)
                     /gene="sirB"
                     /locus_tag="PF788_001102"
     CDS             complement(1280..2275)
                     /gene="sirB"
                     /locus_tag="PF788_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B ABC transporter permease
                     subunit SirB"
                     /protein_id="HDG6303372.1"
                     /translation="MLLKPKYQIVIAGLCLAIVAILSLMIGNTLVSPGTVIQALFNFD
                     SENDLHDVVTGARASRTIIALLTGAALAVSGLLMQALTRNPIASPGLFGVNAGAVFFV
                     IFSITFIQIQSFKMIVVIAFLGAIVVTVLVVALGMFRQTLFSPHRVILAGAAIAMLFT
                     AFTQGILIMNETDLQGLLFWLSGSVSLRNIWDIPWIIPLVLILILIAFSMAAHINILM
                     TSDDIATGLGQNIKLIKWMIIMLISMLAGISVAVAGSIVFVGLIVPNISKRLLPPNYK
                     YLIPFTALAGAILMIISDIVARIIIKPLELPIGVVTAVIGAIVLIYIMKKGRQRL"
     gene            complement(2291..3283)
                     /gene="sirA"
                     /locus_tag="PF788_001103"
     CDS             complement(2291..3283)
                     /gene="sirA"
                     /locus_tag="PF788_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B ABC transporter
                     substrate-binding protein SirA"
                     /protein_id="HDG6303373.1"
                     /translation="MNKVIKMLVVTLAFLLVLAGCSGNSNKQSSDNKDKETTSIKHAM
                     GTTEIKGKPKRVVTLYQGATDVAVSLGVKPVGAVESWTQKPKFEYIKNDLKDTKIVGQ
                     EPAPNLEEISKLKPDLIVASKVRNEKVYDQLSKIAPTVSTDTVFKFKDTTKLMGKALG
                     KEKEAEDLLKKYDDKVAAFQKDAKAKYKDAWPLKASVVNFRADHTRIYAGGYAGEILN
                     DLGFKRNKDLQKQVDNGKDIIQLTSKESIPLMNADHIFVVKSDPNAKDAALVKKTESE
                     WTSSKEWKNLDAVKNNQVSDDLDEITWNLAGGYKSSLKLIDDLYEKLNIEKQSK"
     gene            3514..4494
                     /gene="sbnA"
                     /locus_tag="PF788_001104"
     CDS             3514..4494
                     /gene="sbnA"
                     /locus_tag="PF788_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000570808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diaminopropionate biosynthesis protein SbnA"
                     /protein_id="HDG6303374.1"
                     /translation="MIEKSQACHDSLLDSVGQTPMVQLHQLFPKHEVFAKLEYMNPGG
                     SMKDRPAKYIIEHGIKHGLITENTHLIESTSGNLGIALAMIAKIKGLKLTCVVDPKIS
                     PTNLKIIKSYGANVEMVEEPDAHGGYLMTRIAKVQELLATIDDAYWINQYANELNWQS
                     HYHGAGTEIVETIKQPIDYFVAPVSTTGSIMGMSRKIKEVHPNAQIVAVDAKGSVIFG
                     DKPINRELPGIGASRVPEILNRSEINQVIHVDDYQSALGCRKLIDYEGIFAGGSTGSI
                     IAAIEQLITSIEEGATIVTILPDRGDRYLDLVYSDTWLEKMKSRQGVKSE"
     gene            4491..5501
                     /gene="sbnB"
                     /locus_tag="PF788_001105"
     CDS             4491..5501
                     /gene="sbnB"
                     /locus_tag="PF788_001105"
                     /EC_number="1.5.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate
                     dehydrogenase SbnB"
                     /protein_id="HDG6303375.1"
                     /translation="MNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPL
                     KPYLRQDPENGHIADRIIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILN
                     DPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLE
                     QFDHIERVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQ
                     PYIEYDWLQKGAFISNISIMDVHKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFS
                     KEALHAELGQLVTGDIPGREDDDEIILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLN
                     LY"
     gene            5522..7276
                     /gene="sbnC"
                     /locus_tag="PF788_001106"
     CDS             5522..7276
                     /gene="sbnC"
                     /locus_tag="PF788_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B biosynthesis protein SbnC"
                     /protein_id="HDG6303376.1"
                     /translation="MQNHTAVNTAQAIILRDLVDALLFEDIAGIVSNSEITKENGQTL
                     LIYERETQQIKIPVYFSALNMFRYESSQPITIEGRVSKQPLTAAEFWQTIANMNCDLS
                     HEWEVARVEEGLTTAATQLAKQLSELDLASHPFVMSEQFASLKDRPFHPLAKEKRGLR
                     EADYQVYQAELNQSFPLMVAAVKKTHMIHGDTANIDELENLTVPIKEQATDMLNDQGL
                     SIDDYVLFPVHPWQYQHILPNVFAKEISEKLVVLLPLKFGDYLSSSSMRSLIDIGAPY
                     NHVKVPFAMQSLGALRLTPTRYMKNGEQAEQLLRQLIEKDEALAKYVMVCDETAWWSY
                     MGQDNDIFKDQLGHLTVQLRKYPEVLAKNDTQQLVSMAALAANDRTLYQMICGKDNIS
                     KNDVMTLFEDIAQVFLKVTLSFMQYGALPELHGQNILLSFEDGRVQKCVLRDHDTVRI
                     YKPWLTAHQLSLPKYVVREDTPNTLINEDLETFFAYFQTLAVSVNLYAIIDAIQDLFG
                     VSEHELMSLLKQILKNEVATISWVTTDQLAVRHILFDKQTWPFKQILLPLLYQRDSGG
                     GSMPSGLTTVPNPMVTYD"
     gene            7269..8525
                     /gene="sbnD"
                     /locus_tag="PF788_001107"
     CDS             7269..8525
                     /gene="sbnD"
                     /locus_tag="PF788_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B export MFS transporter"
                     /protein_id="HDG6303377.1"
                     /translation="MINQSIWRSNFRILWLSQFIAIAGLTVLVPLLPIYMASLQNLSV
                     VEIQLWSGIAIAAPAVTTMIASPIWGKLGDKISRKWMVLRALLGLAVCLFLMALCTTP
                     LQFVLVRLLQGLFGGVVDASSAFASAEAPAEDRGKVLGRLQSSVSAGSLVGPLIGGVT
                     ASILGFSALLMSIAVITFIVCIFGALKLIETTHMPKSQTPNINKGIRRSFQCLLCTQQ
                     TCRFIIVGVLANFAMYGMLTALSPLASSVNHTAIDDRSVIGFLQSAFWTASILSAPLW
                     GRFNDKSYVKSVYIFATIACGCSAILQGLATNIEFLMAARILQGLTYSALIQSVMFVV
                     VNACHQQLKGTFVGTTNSMLVVGQIIGSLSGAAITSYTTPATTFIVMGVVFAVSSLFL
                     ICSTITNQINDHTLMKLWELKQKSAK"
     gene            8515..10251
                     /gene="sbnE"
                     /locus_tag="PF788_001108"
     CDS             8515..10251
                     /gene="sbnE"
                     /locus_tag="PF788_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,3-diaminopropanoate--citrate ligase SbnE"
                     /protein_id="HDG6303378.1"
                     /translation="MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSE
                     LETLTGEFRYWSAMGHHMYHPEVWLIDGKSKKITTYKEAIARILQHMAQSADNQTAVQ
                     QHMAQIMSDIDNSIHRTARYLQSNTIDYVEDRYIVSEQSLYLGHPFHPTPKSASGFSE
                     ADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFI
                     LLPTHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLP
                     IHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQT
                     VEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPMSKLSQVIEQSGLAPE
                     AWLECYLNRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPDVCFVRDLEGICLSRTI
                     ATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWQLV
                     AHRLMTWKKEYANNAVFVDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICH
                     NKEVSYCESNNS"
     gene            10160..12010
                     /gene="sbnF"
                     /locus_tag="PF788_001109"
     CDS             10160..12010
                     /gene="sbnF"
                     /locus_tag="PF788_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-(L-alanin-3-ylcarbamoyl)-2-[(2-
                     aminoethylcarbamoyl)methyl]-2-hydroxypropanoate synthase
                     SbnF"
                     /protein_id="HDG6303379.1"
                     /translation="MIVVQTLFIHIYQIQFVITRRYRIVNQTILNRVKTRVMHQLVSS
                     LIYENIVVYKASYQDGVGHFTIEGHDSEYRFTAEKTHSFDRIRITSPIERVVGDEADT
                     TTDYTQLLREVVFTFPKNDEKLEQFIVELLQTELKDTQSMQYRESNPPATPETFNDYE
                     FYAMEGHQYHPSYKSRLGFTLSDNLKFGPDFVPNVKLQWLAIDKDKVETTVSRNVVVN
                     EMLRQQVGDKTYEHFVQQIEASGKHVNDVEMIPVHPWQFEHVIQVDLAEERLNGTVLW
                     LGESDELYHPQQSIRTMSPIDTTKYYLKVPISITNTSTKRVLAPHTIENAAQITDWLK
                     QIQQQDMYLKDELKTVFLGEVLGQSYLNTQLSPYKQTQVYGALGVIWRENIYHMLIDE
                     EDAIPFNALYASDKDGVPFIENWIKQYGSEAWTKQFLAVAIRPMIHMLYYHGIAFESH
                     AQNMMLIHENGWPTRIALKDFHDGVRFKREHLSEAASHLTLKPMPEAHKKVNSNSFIE
                     TDDERLVRDFLHDAFFFINIAEIILFIEKQYGIDEELQWQWVKGIIEAYQEAFPELNN
                     YQHFDLFEPTIQVEKLTTRRLLSDSELRIHHVTNPLGVGGINDATTISET"
     gene            11985..12761
                     /gene="sbnG"
                     /locus_tag="PF788_001110"
     CDS             11985..12761
                     /gene="sbnG"
                     /locus_tag="PF788_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B biosynthesis citrate synthase
                     SbnG"
                     /protein_id="HDG6303380.1"
                     /translation="MQQLSLKHRLNNGDSVYGIFNSIPDPLMIEVIAASGYDFVVIDT
                     EHVAINDETLAHLIRAAEAAHIIPIVRVTAVIDRDIIKVLDMGARGIIVPHVKDRETV
                     EHIVKLSRYYPQGLRSLNGGRMARFGRTPLLDAMEMANEHIMVIAMIEDVEGVMAIDD
                     IAQVEGLDMIVEGAADLSQSLGIPWQTRDDQVTSHVQHIFEVVNAHGKHFCALPREDE
                     DIAKWQAQGVQTFILGDDRGKIYRHLSASLATSKQKGDEG"
     gene            12761..13963
                     /gene="sbnH"
                     /locus_tag="PF788_001111"
     CDS             12761..13963
                     /gene="sbnH"
                     /locus_tag="PF788_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B biosynthesis decarboxylase
                     SbnH"
                     /protein_id="HDG6303381.1"
                     /translation="MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQ
                     MYYAMKANSERKILDTISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEELRY
                     AVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFG
                     ISEDEVDDVIEAALAMPKIHLDGFHFHSISNNLDSNLHVDVVKLYFKKAKAWSEKHRF
                     PLKHINLGGGIGVNYADLTNQFEWDNFVERFKTLIVEQEMEDVTLNFECGRFIVAHIG
                     YYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFDIYRYKDNPYSFEKVSISR
                     QDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAYGWSISHHDFLSHPHPEFIY
                     LTQTKEDE"
     gene            13967..14731
                     /gene="sbnI"
                     /locus_tag="PF788_001112"
     CDS             13967..14731
                     /gene="sbnI"
                     /locus_tag="PF788_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional transcriptional
                     regulator/O-phospho-L-serine synthase SbnI"
                     /protein_id="HDG6303382.1"
                     /translation="MNHIHEHLKLVPVDKIDLHETFEPLRLEKTKSSIEADDFIRHPI
                     LVTAMQHGRYMVIDGVHRYTSLKALGCKKVPVQEIHETQYSISTWQHKVPFGVWWETL
                     QQEHRLPWTTETRQEAPFITMCHGDTEQYLYTKDLGEAHFQVWEKVVASYSGCCSVER
                     IAQGTYPCLSQQDVLMKYQPLSYKEIEAVVHKGETVPAGVTRFNISGRCLNLQVPLAL
                     LKQDDDVEQLRNWKQFLADKFANMRCYTEKVYLVEQ"
     gene            14927..15334
                     /locus_tag="PF788_001113"
     CDS             14927..15334
                     /locus_tag="PF788_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303383.1"
                     /translation="MSSIIGKIAIWIGIVAQIYFSVVFVRMISINIAGGSDYETIFLL
                     GLILALFTVLPTIFTAIYMESYSVIGGALFIVYAIIALCLYNFLSSILWLIGGILLIW
                     NKYSKDESTDENEKVDIESTENQFESKDKITKE"
     gene            15384..16010
                     /locus_tag="PF788_001114"
     CDS             15384..16010
                     /locus_tag="PF788_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6303384.1"
                     /translation="MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYL
                     LSGSRADYLIVTIVISAIISIFVIILSIVPVIVLASDLFKERISKGVILIVLAIIALV
                     LCNFVSAILWFVSAISILGRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMM
                     EHPEVKNPTTKNLEGFNEEIHKDEATTKVVSDNTEPPIESKDHVSKKD"
     gene            16222..16998
                     /locus_tag="PF788_001115"
     CDS             16222..16998
                     /locus_tag="PF788_001115"
                     /EC_number="1.1.1.304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(S)-acetoin forming diacetyl reductase"
                     /protein_id="HDG6303385.1"
                     /translation="MTNNKVALVTGGAQGIGFKIAERLVEDGFKVAVVDFNEEGAKAA
                     ALKLSSDGTKAIAIKADVSNRDDVFNAVRQTAAQFGDFHVMVNNAGLGPTTPIDTITE
                     EQFKTVYGVNVAGVLWGIQAAHEQFKKFNHGGKIINATSQAGVEGNPGLSLYCSTKFA
                     VRGLTQVAAQDLASEGITVNAFAPGIVQTPMMESIAVATAEEAGKPEAWGWEQFTSQI
                     ALGRVSQPEDVSNVVSFLAGKDSDYITGQTIIVDGGMRFR"
     gene            17142..17264
                     /locus_tag="PF788_001116"
     CDS             17142..17264
                     /locus_tag="PF788_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303386.1"
                     /translation="MHQLKALLVLTHPRYYKTSQKHHYLIYLNKNSQSYLILFL"
     gene            17334..18314
                     /locus_tag="PF788_001117"
     CDS             17334..18314
                     /locus_tag="PF788_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HDG6303387.1"
                     /translation="MEDLERVLITGGAGFIGSHLVDDLQQDYDVYVLDNYRTGKRENI
                     KSLADDHVFELDIREYDAVEQIMKTYQFDYVIHLAALVSVAESVEKPILSQEINVVAT
                     LRLLEIIKKYNNHIKRFIFASSAAVYGDLPDLPKSDQSLILPLSPYAIDKYYGERTTL
                     NYCSLYNIPTAVVKFFNVFGPRQDPKSQYSGVISKMFDSFEHNKPFTFFGDGLQTRDF
                     VYVYDVVQSVRLIMEHKDAIGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHEFKEARK
                     GDIKHSYADISNLKALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS"
     gene            18277..18969
                     /locus_tag="PF788_001118"
     CDS             18277..18969
                     /locus_tag="PF788_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDG6303388.1"
                     /translation="MKKLQLKKWKCRENDIEAVHNNKGYAYQRKLDKLEEVRKSYYPI
                     KRAIDLILSIVLLFLTLPIMVIFAIAIVIDSPGNPIYSQVRVGKMGKLIKIYKLRSMC
                     KNAEKNGAQWADKDDDRITNVGKFIRKTRIDELPQLINVVKGEMSFIGPRPERPEFVE
                     LFSSEVIGFEQRCLVTPGLTGLAQIQGGYDLTPQQKLKYDMKYIHKGSLMMELYISIR
                     TLMVVITGEGSR"
     gene            19179..20345
                     /locus_tag="PF788_001119"
     CDS             19179..20345
                     /locus_tag="PF788_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HDG6303389.1"
                     /translation="MKIIYCITKADNGGAQTHLIQLANHFCVHNDVYVIVGNHGPMIE
                     QLDARVNVIIIEHLVGPIDFKQDILAVKVLAQLFSKIKPDVIHLHSSKAGTVGRIAKF
                     ISKSKDTRIVFTAHGWAFTEGVKPAKKFLYLVIEKLMSLITDSIICVSDFDKQLALKY
                     RFNRLKLTTIHNGIADVPAVKQTLKSQSHNNIGEVVGMLPNKQDLQINAPTKHQFVMI
                     ARFAYPKLPQNLIAAIEILKLHNSNHAHFTFIGDGPTLNDCQQQVVQAGLENEVTFLG
                     NVINASHLLSQYDTFILISKHEGLPISIIEAMATGLPVIASHVGGISELVADNGICMM
                     NNQPETIAKVLEKYLIDSDYIKMSNQSRKRYLECFTEEKMIKEVEDVYNGKSTQ"
     gene            20326..21564
                     /locus_tag="PF788_001120"
     CDS             20326..21564
                     /locus_tag="PF788_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDG6303390.1"
                     /translation="MENQHNSKLLTLLLIGLAVFIQQSSVIAGVNVSIADFITLLILV
                     YLLFFANHLLKANHFLQFFIILYTYRMIITLCLLFFDDLIFITVKEVLASTVKYAFVV
                     IYFYLGMIIFKLGNSKKVIVTSYIISSVTIGLFCIIAGLNKSPLLMKLLYFDEIRSKG
                     LMNDPNYFAMTQIITLVLAYKYIHNYIFKVLACGILLWSLTTTGSKTAFIILIVLAIY
                     FFIKKLFSRNAVSVVSMSVIMLILLCFTFYNINYYLFQLSDLDALPSLDRMASIFEEG
                     FASLNDSGSERSVVWINAISVIKYTLGFGVGLVDYVHIGSQINGILLVAHNTYLQIFA
                     EWGILFGALFIIFMLYLLFELFRFNISGKNVTAIVVMLTMLIYFLTVSFNNSRYVAFI
                     LGIIVFIVQYEKMERDRNEE"
     gene            21554..22984
                     /locus_tag="PF788_001121"
     CDS             21554..22984
                     /locus_tag="PF788_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HDG6303391.1"
                     /translation="MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVS
                     FSFNIVQYFLMIASVGVQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYM
                     VVITIFIDDYYLIFLLQGIYIIGAALDISWFYAGTEKFKIPSLSNIVASGIVLSVVVI
                     FVKDQSDLSLYVFTIAIVTVLNQLPLFIYLKRYISFVSVNWIHVWQLFRSSLAYLLPN
                     GQLNLYTSISCVVLGLVGTYQQVGIFSNAFNILTVAIIMINTFDLVMIPRITKMSIQQ
                     SHSLTKTLANNMNIQLILTIPMVFGLIAIMPSFYLWFFGEEFASTVPLMTILAILVLI
                     IPLNMLISRQYLLIVNKIRLYNASITIGAVINLVLCIILIYFYGIYGAAIARLITEFF
                     LLIWRFIDITKINVKLNIVSTIQCVIAAVMMFIVLGVVNHYLPPTMYATLLLIAIGIV
                     VYLLLMMTMKNQYVWQILRHLRHKTI"
BASE COUNT         7730 a         3573 c         4476 g         7363 t
ORIGIN      
        1 atatgatatt tttattaaaa tttgtgtttt tgaataaatg acattatcaa acactatatt
       61 taaataagaa atagttatcg atatttgaaa aatcgaagaa tattgattga tattatagaa
      121 tatgagtcgg tgttatttgt atataaagta ttaatatgta attaagaaag tcgacgattg
      181 ttaacaataa caacaactat atgtataaaa aaacctcgca acggttagtt aactgaatca
      241 tttagctaac ttcgttgtga ggtcattttg ttttaataat atcgttataa ctttttcacg
      301 gttaataata agtatatgaa gaatggggca ccaaaagcag caataaatac acctgctggc
      361 acttctttag gcaagaataa ggtacgccca attaagtctg caataacaat tgatatggca
      421 ccaatcattg ctgacattag taacttttta gcataacttc cgcgaacgat tgttttcgcg
      481 atatgtggtg cgattaaacc gacaaaccca atgttaccta ctaaactgat tgccatagat
      541 acgagtatag tagaagtgat taattggatt agtttcatac gttgtacatg taagcctaag
      601 ccaatcgcta cagggtcatc aagtatagat attttcattt ttggtataac aagaaataac
      661 aacggcacaa cagctaaaat aaccataccc aaaatgattg tatctttaaa cgtagcaccg
      721 taaagacttc cgactagcca tgtataagct ttggcagcag ataattgctt cgttgtaatg
      781 agtaatcctt ggacaagcgc aataaacaac gtttgcatcg aaataccgat gattatgagt
      841 gttgtcgggc gtatttgtcc tttcgtttga aacactaata gtatcatcat tgcaactgcg
      901 ccacctaata ctgcaaatag tggaagtaaa tgtattgtta aatggctgaa aaatgcaata
      961 aagacaacag cacttaagct agcaccacct gtgataccga taatatcagg tgaggcaatt
     1021 ggatttttta atacattttg caacattaaa ccactcattc ctagtgcggc acctgctaaa
     1081 atcgcaagtg taatgcgagg taagcgtaat acttctaaag tgaattgatc catactgtca
     1141 tttggattta taaagtacat cagtacgcgt tgtaatggta taaagcttga accaatcatc
     1201 atacttacca ctgaaacgat ggctaaaaag attaacgcga agatgagatg gtaattgtct
     1261 tttttattaa tcttttcggt cataagcgtt gacgtccttt cttcataata tagattaaga
     1321 caatagcgcc aatgacagcg gtaacgacac cgataggcaa ctctagtggc ttaattatta
     1381 tacgagcaac aatgtctgaa atgatcatta ggattgctcc agctaatgca gtaaaaggaa
     1441 ttaaatactt atagtttggt ggtaataatc gtttgctaat attcggtacg ataagaccca
     1501 caaagacgat tgatccagct acggctaccg aaataccggc taacatactg atgagcataa
     1561 taatcatcca tttgattaat tttatgtttt gaccgaggcc ggttgcaatg tcgtcacttg
     1621 tcatcaagat gttgatgtgt gcagccatgc taaatgcaat taaaataagt atcaatacaa
     1681 gcggaataat ccatgggata tcccaaatat tacgtaatga aacggagcca cttaaccaaa
     1741 ataataggcc ttgtaagtct gtttcgttca taataagtat gccttgagta aaggctgtaa
     1801 atagcatcgc aatcgcagca cctgccaaaa tgacacggtg aggtgagaat agtgtttgtc
     1861 taaacatacc tagtgcaaca actaatacag taacaacaat agcccccaaa aatgcaataa
     1921 ctacaatcat tttaaaagat tgaatttgga taaatgtaat actaaaaatg acaaaaaata
     1981 ctgcgcctgc attgacaccg aaaagccctg gtgaggctat tgggtttcgt gtaagtgctt
     2041 gcatcaacaa acctgagaca gcaagggcag caccagtcaa taacgcaatg attgttctcg
     2101 acgcccgtgc accagtgaca acatcatgta aatcgttttc actatcaaag ttgaataacg
     2161 cctgtatcac cgtacctggt gacacaagcg tatttccaat cattaaactt aagatagcta
     2221 ctattgcaag acataaacca gcaataacga tttggtattt tggtttaagt agcatcgtaa
     2281 aactccttaa ttattttgat tgtttttcaa tatttaactt ttcatataaa tcgtcaataa
     2341 gttttaatga agatttatat ccgccagcta agttccaagt gatttcatct aaatcatcag
     2401 atacttggtt gtttttaact gcgtctaaat ttttccactc tttacttgaa gtccattcgc
     2461 tttcagtctt tttaactaat gcagcatctt tcgcatttgg atctgatttt actacaaaaa
     2521 tatgatcagc gttcattaat ggaatgcttt ctttagatgt aagttggata atatctttac
     2581 cattatcaac ttgtttttgt aagtctttat tacgtttgaa tcctaaatca tttaagattt
     2641 caccagcata tccaccagca taaattcttg tatgatcagc acggaagtta acaactgaag
     2701 ctttcaatgg ccatgcatct ttatactttg cttttgcatc tttttggaat gcagctactt
     2761 tatcatcgta ctttttaagt aaatcttcag cttctttttc tttccctaaa gctttcccca
     2821 ttaacttagt tgtatctttg aatttgaaaa ctgtatcagt agaaactgtt ggtgcgattt
     2881 tagataattg atcgtaaact ttttcatttc taacttttga cgcgacaatt aagtccggtt
     2941 ttaatttaga gatttcctct aagttaggtg caggttcttg acctacaatc ttagtatctt
     3001 ttaaatcatt ttttatgtat tcgaatttcg gtttttgtgt ccatgattct acagcaccta
     3061 caggtttaac acctaaagat acagcgacgt cagtggcacc ttgatatagc gtaacaacac
     3121 gctttggttt ccctttaatt tcagttgtac ccattgcatg tttaattgaa gttgtttcct
     3181 tatctttgtt atcagatgat tgtttatttg aattcccact acatcctgct aaaacaagta
     3241 ggaaagcaag cgtaacaaca agcattttaa ttactttatt cattgactaa ttagcctcct
     3301 tcgtgatgta tgacaatgag aatcattatc acgatttagt atgaattaaa ttttttccta
     3361 agtcaataaa atatttatga tttacatgca acttataatt atttgacata taaatgcata
     3421 aaaaatataa tcctaattac ttgatagtga gaatcattat caattaggta acacacaata
     3481 ttatagaatt ttaaatttga ggaggaagcg cttttgattg aaaaaagtca agcatgtcac
     3541 gattcattgt tagattctgt agggcaaaca cctatggttc aacttcatca actatttccg
     3601 aaacatgaag tgtttgcaaa gttagagtat atgaatcctg gaggcagcat gaaagatcga
     3661 cctgccaagt acatcattga acatggtatt aaacatggtt taatcactga gaatacacat
     3721 ttaattgaaa gtacttctgg taatttaggc attgcgttgg caatgatagc taaaatcaag
     3781 ggattaaaac tcacgtgtgt tgttgatcct aaaatatcac caacaaattt gaaaattatt
     3841 aaaagttatg gtgccaatgt agaaatggtt gaagaacctg atgcacatgg gggttattta
     3901 atgactcgta ttgcaaaggt gcaagaactg ttagccacta ttgacgatgc atattggatt
     3961 aatcaatatg cgaatgagtt aaattggcaa tcccattatc atggtgcagg cacagagatt
     4021 gttgaaacaa ttaagcaacc tatagattat tttgtcgcgc cagtcagcac gacaggtagc
     4081 attatgggta tgagtagaaa aataaaagaa gtgcatccaa acgcacaaat tgttgctgtt
     4141 gatgcgaaag ggtcagtcat ttttggtgac aaacctatta atagagaatt acctggtatc
     4201 ggtgctagtc gtgtacccga aatattgaat agatcagaaa ttaatcaagt gatccatgta
     4261 gatgattatc aatctgcttt gggctgtcga aaactgattg attatgaagg catatttgcc
     4321 ggaggttcaa caggttcgat tattgcagcg attgagcagt tgataacgtc aattgaagaa
     4381 ggtgcaacaa ttgtcacgat tttaccagat cgaggcgatc gttacttaga tttagtttat
     4441 tcagatacat ggttagaaaa aatgaaatca agacaaggag ttaaatcaga atgaatagag
     4501 agatgttgta tttaaataga tcagatattg aacaagcggg aggtaatcat tcacaagttt
     4561 atgtggacgc attaacagaa gcattaacag cccatgcgca caatgatttt gtacaaccgc
     4621 ttaagccgta tttaagacag gatcctgaaa atggacacat cgcagatcga attattgcaa
     4681 tgccaagtca tatcggtggt gaacacgcaa tttcaggtat taagtggata ggtagtaagc
     4741 acgacaatcc atcgaaacgt aatatggagc gtgcaagtgg cgtcattatt ttgaatgatc
     4801 cagaaacgaa ttatccaatt gcagttatgg aagcaagttt aattagtagt atgcgtactg
     4861 cagcagtttc agtgattgca gcaaagcatt tggctaaaaa aggatttaaa gacttaacaa
     4921 tcattggatg cgggctaatc ggagacaagc aattacaaag tatgttagag caattcgatc
     4981 atattgaacg cgtgtttgtt tacgatcaat tctctgaagc atgtgcacgc tttgttgata
     5041 gatggcaaca acagcgtccg gaaattaatt ttattgcgac agaaaatgct aaagaagcag
     5101 tatcaaatgg tgaagtagtc attacatgta ccgtaacgga tcaaccatac attgaatatg
     5161 attggttaca aaagggtgca tttattagca acatttctat catggatgtg cataaagaag
     5221 tctttattaa agctgacaaa gtcgtagtag atgactggtc acaatgtaat cgagaaaaga
     5281 aaactattaa ccaattggtg ttagaaggta aattcagcaa agaagctctt catgctgaac
     5341 taggacaact tgtgacaggt gacataccag gacgtgaaga cgatgatgag atcatattac
     5401 ttaatccgat gggtatggct atcgaagata tttcaagtgc ttattttatt tatcaacagg
     5461 cacaacaaca aaatattggg acaacattga acctatatta agaatgcgag gtgtctgaac
     5521 attgcagaat catacagcag tcaatacagc acaagcgata atattaagag atttagttga
     5581 tgcattatta tttgaagata tagccggaat tgtatcgaat agtgagatta ctaaagaaaa
     5641 cggacaaacg cttttgatat acgaacgtga aacacaacaa ataaagatac ctgtttattt
     5701 tagtgcttta aatatgtttc gttacgaaag ttcacaacca attacgatag agggaagggt
     5761 gtctaagcaa cctttaacgg cagctgaatt ttggcaaaca attgctaata tgaattgtga
     5821 tctaagtcat gaatgggaag tggctcgcgt tgaagaagga ctgactactg ctgccacaca
     5881 gcttgctaaa caattatcag aattagattt agcgtcacat ccttttgtga tgtcagagca
     5941 gtttgcaagt ttaaaagatc gtccatttca tccattagct aaagaaaaaa gaggattaag
     6001 agaagcggat tatcaagtgt atcaagctga attaaatcaa tcatttcctt taatggttgc
     6061 agcagttaaa aagacacata tgattcatgg cgatactgca aatatcgatg aattagaaaa
     6121 tttgacagta cctataaaag aacaagcgac agacatgtta aatgatcaag ggttatcaat
     6181 agatgactat gtactatttc cggtacatcc ttggcaatat cagcatattc tgccgaacgt
     6241 ctttgcgaaa gagattagtg aaaagttggt tgtactatta ccgttaaaat ttggagatta
     6301 tctgtcgtct tcaagtatgc gttcattaat tgatattggc gcaccgtata accatgtcaa
     6361 agtaccattt gcaatgcagt cattaggcgc attaaggcta acgcctacgc gttacatgaa
     6421 aaacggagaa caagcagaac aattattacg tcagcttata gaaaaagatg aagcactagc
     6481 taagtatgtc atggtttgtg atgaaacagc ttggtggtca tatatgggtc aagataatga
     6541 tattttcaaa gatcaattag gtcatctaac tgttcagcta agaaagtatc ccgaagtgct
     6601 agccaaaaat gatacgcaac agctagtgtc aatggcagca ctcgcggcaa atgatcgcac
     6661 tttatatcaa atgatttgtg gaaaagataa tatttctaaa aatgatgtca tgacgttatt
     6721 tgaagatatc gcgcaagtct ttttaaaggt aacactatca tttatgcaat acggcgcatt
     6781 accagagttg catggtcaaa atatattgtt gtcatttgaa gatggacgtg tacaaaaatg
     6841 cgtgttacgt gatcatgata ctgtcagaat ttataaacca tggctaacag cacatcagct
     6901 ttcattgccg aagtatgtcg tcagagaaga tacacctaat acgctaatta atgaggattt
     6961 ggaaacattc tttgcttatt ttcaaacatt agctgtatcg gtaaatctat atgccattat
     7021 tgatgcaatt caagatttat ttggtgtaag tgagcatgaa cttatgtcgt tgttaaaaca
     7081 aattttaaaa aatgaagtgg caactatttc ctgggttaca actgatcagc tagctgtcag
     7141 acacatttta tttgataaac agacgtggcc attcaaacaa attttattac cattgctata
     7201 tcaacgtgat agtggtggag gtagtatgcc ttcaggttta actaccgtac caaatccaat
     7261 ggtgacatat gattaatcag tctatatggc gcagtaactt tcgcatttta tggctcagtc
     7321 agtttatagc gattgctgga ctgacagtac ttgtgccatt attgccaatt tatatggcat
     7381 cactacaaaa tctatcagtc gtagaaatac agttgtggag tggtatagcg attgctgctc
     7441 cagctgtaac gacgatgata gcttcgccga tatgggggaa gctaggtgat aagatcagcc
     7501 gaaaatggat ggtgttaaga gcgttacttg gtttggcggt atgcttattt ttaatggcat
     7561 tgtgtacgac accattacag tttgtacttg tgaggttatt gcagggacta tttggtggtg
     7621 ttgttgatgc atcaagtgcg tttgcgagtg cagaggcgcc agctgaagat cgtggaaagg
     7681 tattaggaag actgcaaagt tcagtcagcg cagggtctct tgtggggcca ttaattggcg
     7741 gtgttacagc ttcgatatta ggttttagtg cgttactgat gagtattgcc gttattactt
     7801 ttattgtctg tattttcggt gcattaaaat tgattgaaac gacacatatg ccaaaatcac
     7861 aaacaccaaa tattaataaa ggtattcgcc gttcatttca atgtctatta tgcacacaac
     7921 aaacatgtcg atttattatc gttggcgttt tagcaaactt tgctatgtat ggcatgctaa
     7981 ctgcattatc accacttgct tcatcagtga atcatacagc gatagatgac cgtagtgtga
     8041 ttggattttt acagtccgca ttttggacgg cttcgatatt aagcgcgcct ttatggggac
     8101 gctttaatga taaatcatat gttaaatcag tatatatatt tgccacgatt gcatgtggtt
     8161 gtagtgcgat actgcaaggt ttagcgacga atatagagtt tttaatggct gcaagaatac
     8221 ttcaaggatt aacatatagt gcattgattc aaagtgtcat gtttgttgtc gtgaatgcgt
     8281 gtcatcaaca acttaaaggc acatttgttg gaacgacgaa cagtatgtta gttgttggtc
     8341 aaattattgg cagtcttagt ggcgctgcca ttacaagtta tactacacca gctactacgt
     8401 ttatcgttat gggcgtagta tttgcagtaa gtagtttatt tttaatttgt tcaaccatca
     8461 ctaatcaaat caacgatcac acattaatga aattatggga gttgaaacaa aaaagtgcaa
     8521 aataaagaat taatacaaca tgcagcgtat gcggctatcg aacgcatttt aaatgaatat
     8581 tttagagaag aaaatttata tcaagtacca cctcaaaatc atcaatggtc tatacaatta
     8641 tcagagctcg aaactttaac gggtgaattt cgctattggt ctgcgatggg gcatcatatg
     8701 tatcatccag aggtatggct tatcgatgga aaaagtaaaa aaataacaac ttataaagaa
     8761 gcaattgcgc gtattttgca acatatggct caaagtgcag ataatcaaac ggcagtgcaa
     8821 caacatatgg cgcaaattat gtctgacatc gataatagca ttcatcgcac ggcacgttat
     8881 ttgcaaagta acacaataga ctacgtagag gatcgttata tcgtttcaga acaatcttta
     8941 tacttaggtc atccatttca tccgactcct aagagtgcaa gtgggttttc agaagcagat
     9001 ttagagaaat atgcacccga atgtcataca tcattccaat tgcattattt agctgtgcat
     9061 caagatgttc tgctcacgcg ctatgtagaa ggtaaagaag atcaggttga gaaagtgttg
     9121 tatcaattag cagacataga tatatcagag atacccaaag attttatttt attaccaaca
     9181 catccttatc aaatcaatgt gttgcgacag catccacagt atatgcaata tagtgaacaa
     9241 ggtttaataa aagaccttgg cgtttccggt gattcagtgt acccgacgtc ttcggttaga
     9301 actgtatttt caaaagcatt aaacatttat ttaaaattac cgatacacgt taaaatcact
     9361 aattttatac gtacgaatga ccttgaacag attgaacgga caattgatgc cgcgcaagtt
     9421 atcgcatcag tcaaagatga ggttgaaaca ccccatttta aattgatgtt tgaagaagga
     9481 tatcgtgcat tgttaccgaa tccattaggg caaacagttg aacctgaaat ggatttatta
     9541 acaaatagtg ccatgattgt tcgtgaaggg ataccgaatt accatgctga taaagatatt
     9601 catgtattgg cgtcattatt tgaaacgatg cctgattcac cgatgtctaa gttatcacaa
     9661 gtgattgagc aaagtggttt agcaccagaa gcatggcttg aatgttattt gaatcgtaca
     9721 ttattgccga tattaaagct gtttagtaac acaggcatta gtctagaagc acatgtacaa
     9781 aatacattaa ttgaattaaa agatggcata cccgacgtat gctttgtcag agatcttgaa
     9841 ggcatttgtc tatctagaac gattgctact gaaaaacagc ttgtgccaaa tgttgtggca
     9901 gcatcaagcc ctgttgtata tgcacatgat gaagcatggc atcgtcttaa atattacgtt
     9961 gtagtaaatc acttaggaca tttagtatca actattggta aagcgactag aaatgaagtt
    10021 gtgttatggc aacttgtagc gcatcgtctt atgacttgga aaaaagaata cgcgaataac
    10081 gcagtatttg ttgactgtgt agaagattta tatcaaacgc cgaccattgc ggctaaagcg
    10141 aatttgatga gtaaattgaa tgattgtggt gcaaacccta tttatacaca tataccaaat
    10201 ccaatttgtc ataacaagga ggtatcgtat tgtgaatcaa acaattctta atcgtgtaaa
    10261 gactagagtg atgcaccaac tggtatcatc acttatttat gagaatattg ttgtgtataa
    10321 agcgtcatat caagacggtg tcggtcattt tacaatagaa ggacatgatt cagagtatcg
    10381 ttttactgct gaaaagacac atagctttga tcgtatacgt atcacatcac caattgagcg
    10441 tgtcgtagga gatgaggcag atacaacaac agactataca caattattga gagaggttgt
    10501 atttacattt cctaaaaatg atgaaaagct agaacaattt attgtcgagt tattacagac
    10561 agaattaaaa gatacgcaaa gtatgcagta tcgagaatca aacccaccag caacacctga
    10621 gacatttaac gactatgaat tttatgcgat ggaagggcat cagtatcatc caagttacaa
    10681 atcacgttta ggatttacgt tgagtgataa tttgaaattt ggtcctgatt ttgtaccaaa
    10741 cgttaaactg cagtggttag ctatcgacaa agataaagta gaaacgacgg tatcaagaaa
    10801 tgttgtagtt aacgaaatgt tacgtcaaca agttggcgat aagacttatg aacattttgt
    10861 acagcagatt gaagcatctg gcaaacatgt aaatgatgtt gagatgatac ctgtacaccc
    10921 atggcagttt gaacatgtca tccaagttga tttggctgaa gaaaggctta atggcacagt
    10981 actatggtta ggggaaagtg atgagctata tcaccctcaa caatcgattc gtacgatgtc
    11041 gccaatagac acgacaaaat attatttaaa ggtaccaata agtataacga acacttcaac
    11101 gaaacgagtg ttggcgcctc atacaattga aaatgcagcg caaattacgg attggttaaa
    11161 gcagatacag caacaagata tgtatttaaa agatgaatta aagacagttt ttctagggga
    11221 agtcttagga cagtcttatt taaatacaca actttcgcct tataaacaaa ctcaagttta
    11281 tggtgcgtta ggtgttatat ggcgtgaaaa tatatatcat atgttaatcg atgaagagga
    11341 tgcgatacca tttaatgcac tttatgcaag tgataaggat ggtgtaccat tcattgaaaa
    11401 ttggattaaa caatatggtt ctgaagcttg gacaaagcaa tttttagctg tagcgattcg
    11461 tccaatgatt catatgcttt attatcacgg tattgccttt gaatcgcatg cacaaaatat
    11521 gatgctcatt catgaaaatg gttggcctac acgtattgcc ttaaaagatt tccatgatgg
    11581 tgttcgtttt aagcgtgagc atttaagtga agctgcttca cacctgacat taaagccaat
    11641 gccagaagca cataaaaaag tgaatagtaa ttcatttatt gaaacagatg acgaacgttt
    11701 agtacgcgac tttttacatg atgcattttt ctttattaat atcgccgaaa tcatcttatt
    11761 tattgaaaag caatatggta tcgatgagga gctgcaatgg caatgggtta aaggcatcat
    11821 cgaggcgtat caagaagcat ttccagagtt gaataactat caacatttcg atttgtttga
    11881 acctacgatt caagttgaaa agttaacgac acgtcgatta ttaagtgact ccgagttaag
    11941 aattcatcat gttacaaatc cattaggtgt aggaggtatc aatgatgcaa caactatctc
    12001 tgaaacatag attaaacaat ggtgattcag tttatggcat ttttaattct ataccggacc
    12061 cattgatgat cgaggttatc gcagcaagcg ggtatgactt tgttgtgatt gatacagaac
    12121 acgtggcgat taatgatgag acactagcgc atttaattcg tgcagctgaa gcagcgcata
    12181 ttataccaat tgtacgtgtc actgcagtga tagatagaga tatcattaaa gtgttggata
    12241 tgggtgcgag aggtattatt gtgccacacg ttaaagatcg tgagacagtt gagcatattg
    12301 tgaaattaag tcgttattac ccgcaaggat taagaagttt gaatggtggt cgcatggcaa
    12361 gatttggacg tacaccatta cttgatgcaa tggagatggc taatgagcat attatggtga
    12421 ttgccatgat agaagatgtt gaaggggtta tggccattga cgatatagca caagtcgaag
    12481 gtttagacat gatagtcgaa ggtgccgcag atttatcgca gtcacttggc ataccatggc
    12541 aaacgcgtga tgatcaagta acatcacatg ttcaacatat ttttgaagtt gtgaatgcac
    12601 atggtaaaca tttttgtgca ttaccacgtg aagatgaaga tattgcaaaa tggcaggcac
    12661 aaggtgtaca aacatttatt ttaggtgatg atcgcggaaa aatatatcgc catttaagtg
    12721 catctctagc gacgtctaaa cagaaagggg atgaaggcta atgcgtatag ttcaacctgt
    12781 tattgaacaa ttaaaagcac aatctcatcc agtttgtcat tatatctatg atttagtcgg
    12841 actggaacat catttgcaac atattacatc gtcattgccg agtaattgtc aaatgtacta
    12901 tgcaatgaaa gcaaatagtg aacgaaaaat cctagataca attagtcagt atgttgaagg
    12961 attcgaagtt gcatctcaag gtgaaatagc aaaaggtctt gcttttaaac cagcaaatca
    13021 tattattttt ggtggccctg gtaagacaga cgaggaacta agatatgcag taagtgaagg
    13081 tgttcagcgt attcatgttg aaagtatgca tgaattacaa cggctaaatg ccatcttaga
    13141 agatgaagat aagacacaac acattttatt gcgtgttaat ttagcaggac catttcccaa
    13201 tgcaacgttg catatggcag gacgcccaac acaatttggt atttctgaag acgaagttga
    13261 tgatgtcatt gaagctgcgc tcgcaatgcc aaagattcat ctagatggat ttcattttca
    13321 ttctatttct aacaatttag actcgaattt acatgtcgat gtagtgaaac tttattttaa
    13381 aaaagcaaag gcatggtctg aaaaacatcg atttccactc aaacatatca atcttggtgg
    13441 tggcataggc gttaactatg cagatttaac taaccaattt gaatgggata attttgtaga
    13501 acgttttaaa acacttatcg ttgagcaaga aatggaagat gtgacattga actttgaatg
    13561 tgggcgcttt attgtggcac atattggtta ctatgtgaca gaagtgctag acattaagaa
    13621 agtacatggt gcttggtatg ccatattaag aggaggtacg caacaattta gactgccggt
    13681 atcttggcaa cataaccatc cttttgacat ttatcgctat aaggacaatc catattcatt
    13741 tgaaaaagtt tcaatttcga gacaggacac aacgttagtc ggtcaattat gtacaccgaa
    13801 agatgtcttt gctagagaag tacagataga cgcaatcagt acaggcgacg ttattgtttt
    13861 caaatatgca ggtgcatacg gatggtctat ttcacatcac gatttcttaa gccatccaca
    13921 tcctgaattt atttatttaa cgcaaacaaa ggaggatgaa taactattga atcatattca
    13981 tgaacattta aaattggtac cagtagataa gattgatctt cacgaaacat tcgaaccttt
    14041 aagattggaa aaaacgaaaa gtagtattga agcagatgat tttatacgtc atcctatttt
    14101 agtgacagcg atgcaacatg gtagatatat ggttatagat ggtgtgcatc ggtatacaag
    14161 tttgaaagcg ttaggatgta agaaagttcc agtgcaagaa atccatgaaa cacaatattc
    14221 aattagtaca tggcaacata aagttccatt tggtgtgtgg tgggaaacgt tacaacaaga
    14281 acatcgcttg ccatggacta ctgagacaag acaagaagcg ccatttatta caatgtgtca
    14341 tggtgataca gaacaatatt tgtatacaaa agatttaggc gaagcacatt ttcaagtatg
    14401 ggaaaaggtt gtcgcaagtt atagtggttg ttgttctgta gagagaattg cacaaggtac
    14461 atatccttgt ctttctcaac aagatgtact catgaagtat cagccattga gttataagga
    14521 aattgaagcg gttgttcata aaggggaaac tgtgccagca ggtgtgacac gctttaatat
    14581 ttcaggacga tgtcttaatc ttcaagtacc actggcatta cttaaacaag atgatgatgt
    14641 tgaacaactg cgcaattgga agcagttttt agcagataag tttgccaata tgagatgcta
    14701 tactgaaaaa gtatacttgg tggagcaata gttttactgt gatgttgagg gaaatatgat
    14761 gatttagcgt attgatagcg aaaatataat aaaacaatat agtgtggaga acttttgata
    14821 ttttataaat attgaagttc tccatttttg tattttgcat ataaaaatta aataaaataa
    14881 ggtatattaa ggtaaagtat aaattttaaa taaatgggga atgagtatga gctcaattat
    14941 aggaaaaata gcaatttgga taggcatcgt agctcaaata tattttagtg tcgtttttgt
    15001 taggatgata tctattaata ttgctggagg atctgattac gaaacaattt ttttattagg
    15061 attaatattg gctcttttca ctgttttacc aaccatcttt actgcgattt atatggaaag
    15121 ttactctgta atcggaggtg cactttttat tgtttatgct attattgcac tgtgtttata
    15181 taatttcctt tcgtcaattt tatggctgat tggtggtatt ttgctgattt ggaataaata
    15241 ctcaaaagat gaatcgacag acgaaaatga aaaagttgat attgaaagta cagagaatca
    15301 atttgaatct aaagataaaa tcactaaaga ataaagagaa tatttaaggt aaagtataaa
    15361 ttttaaataa atggggaata gacatggaaa aaaatgtaga aaaatcattc ataaagatag
    15421 gtttatattt tcaaatagct tatatagtac tcatggctat aactttatgt gggtttgtaa
    15481 tttgctatgg actaattttc ggccttttct atttattatc aggtagcaga gctgattatt
    15541 taatagtaac aatagttata tcggcaataa tttctatatt tgtaattata ctttcaatcg
    15601 tacctgtcat cgtattggca tctgacttat ttaaagaaag gatttcaaaa ggtgtcatat
    15661 taattgtatt ggctattatc gctttagtat tatgcaactt tgtatctgca atactctggt
    15721 ttgtttcagc catatctatt ttaggtagaa aaaaattagt agctgcagca gatactacca
    15781 ctattcaaaa aagtaaaggg aacgcaaatc aagcatcaca taaagacacg tgtaaaaagg
    15841 aacttgatag tcaagacatg atggaacatc ctgaggttaa aaatcccacg actaaaaacc
    15901 ttgaaggatt taacgaagaa atacataaag atgaagctac aactaaagtt gtcagtgata
    15961 acacggaacc gcctattgaa tcaaaagacc atgtctcgaa aaaagattga tgacaaacta
    16021 atcgagagac ttaaaaaaat aatattcaac ataagaactt ttaaaacgac atttaaacgc
    16081 attgccaatc actaatggta gtgcgtttaa ctatacctta aatatctgaa tattttgtta
    16141 aatggagcta cctttgttgt actattcaaa tgaagaggag taaaatgtaa ttaaaggaaa
    16201 gaaatttgag gagtgatctt tatgacaaac aacaaagtag cattagtaac tggcggagca
    16261 caagggattg gttttaaaat tgcagaacgt ttagtggaag atggtttcaa agtagcagtt
    16321 gttgatttca atgaagaagg ggcaaaagca gctgcactta aattatcaag tgatggtaca
    16381 aaagctattg ctatcaaagc agatgtatca aaccgtgatg atgtatttaa cgcagtaaga
    16441 caaactgccg cgcaatttgg cgatttccat gtcatggtta acaatgccgg ccttggacca
    16501 acaacaccaa tcgatacaat tactgaagaa cagtttaaaa cagtatatgg cgtgaacgtt
    16561 gcaggtgtgc tatggggtat tcaagccgca catgaacaat ttaaaaaatt caatcatggc
    16621 ggtaaaatta tcaatgcaac atctcaagca ggcgttgagg gtaacccagg cttgtcttta
    16681 tattgcagta caaaattcgc agtgcgaggt ttaacacaag tagccgcaca agatttagcg
    16741 tctgaaggta ttactgtgaa tgcattcgca cctggtatcg ttcaaacacc aatgatggaa
    16801 agtatcgcag tggcaacagc cgaagaagca ggtaaacctg aagcatgggg ttgggaacaa
    16861 tttacaagtc agattgcttt gggcagagtt tctcaaccag aagatgtttc aaatgtagtg
    16921 agcttcttag ctggtaaaga ctctgattac attactggac aaacaattat tgtagatggt
    16981 ggtatgagat tccgttaata atcatccact aatgataaat aaatccttat tgttaagttt
    17041 aatcacttag cagtaaggat tttttagtgc acttagaagg gagtgtattg gtagaaaatt
    17101 aataagcgaa gttcttaagt gagttatgat gtcacagtct aatgcatcag ttgaaagcat
    17161 tattagtatt aacacaccca agatattata aaacatcaca aaaacaccac tatctaattt
    17221 atctcaataa aaattcacaa agttatctca ttttattttt ataaataaaa aatatcgata
    17281 aaaagcttac aatactttat gtttttatga tatattttta atgtataaat gaggtggaag
    17341 atttggaaag agttttgata actggtgggg ctggttttat tgggtcgcat ttagtagatg
    17401 atttacaaca agattatgat gtttatgttc tagataacta tagaacaggt aaacgagaaa
    17461 atattaaaag tttggctgac gatcatgtgt ttgaattaga tattcgtgaa tatgatgcag
    17521 ttgaacaaat catgaagaca tatcaatttg attatgttat tcatttagca gcattagtta
    17581 gtgttgctga gtcggttgag aaacctatct tatctcaaga aataaacgtc gtagcaacat
    17641 taagattgtt agaaatcatt aaaaaatata ataatcatat aaaacgtttt atctttgctt
    17701 cgtcagcagc tgtttatggt gatcttcctg atttgcctaa aagtgatcaa tcattaatct
    17761 taccattatc accatatgca atagataaat attacggcga acggacgaca ttaaattatt
    17821 gttcgttata taacatacca acagcggttg ttaaattttt taatgtattt gggccaagac
    17881 aggatcctaa gtcacaatat tcaggtgtga tttcaaagat gttcgattca tttgagcata
    17941 acaagccatt tacatttttt ggtgacggac tgcaaactag agattttgta tatgtatatg
    18001 atgttgttca atctgtacgc ttaattatgg aacacaaaga tgcaattgga cacggttata
    18061 acattggtac aggcactttt actaatttat tagaggttta tcgtattatt ggtgaattat
    18121 atggaaaatc agtcgagcat gaatttaaag aagcacgaaa aggagatatt aagcattctt
    18181 atgcagatat ttctaactta aaggcattag gatttgttcc taaatataca gtagaaacag
    18241 gtttaaagga ttactttaat tttgaggtag ataatattga agaagttaca gctaaagaag
    18301 tggaaatgtc gtgaaaatga cattgaagct gtccataata ataagggtta tgcctatcaa
    18361 agaaaattag acaaactaga agaagtgaga aaaagctatt acccaattaa acgtgcgatt
    18421 gacttaattt taagcattgt tttattattt ttaactttac cgattatggt tatattcgcc
    18481 attgctatcg tcatagattc gccaggaaac cctatttata gtcaggttag agttgggaag
    18541 atgggtaaat taattaaaat atacaaatta cgttcgatgt gcaaaaacgc agagaaaaac
    18601 ggtgcgcaat gggctgataa agatgatgat cgtataacaa atgtcgggaa gtttattcgt
    18661 aaaacacgca ttgatgaatt accacaacta attaatgttg ttaaagggga aatgagtttt
    18721 attggaccac gcccggaacg tccggaattt gtagaattat ttagttcaga agtgataggt
    18781 ttcgagcaaa gatgtcttgt tacaccaggg ttaacaggac ttgcgcaaat tcaaggtgga
    18841 tatgacttaa caccgcaaca aaaactgaaa tatgacatga aatatataca taaaggtagt
    18901 ttaatgatgg aactatatat atcaattaga acattgatgg ttgttattac aggggaaggc
    18961 tcaaggtagt cttaatttac ttaataagtt caaataaaag ttatatttta aagattgtga
    19021 ccaattgtta cagtataacg aggaatccct tgagacagta tcaaatggca ttaagaaata
    19081 tgtgccatca ttgatttgca tggctataaa tactattcat ctgatgagat agccatgtta
    19141 agaaattgaa agtatagcat taaaggggtt tgtaacagtt gaaaattata tattgtatta
    19201 ctaaagcaga caatggtggt gcacaaacac atctcattca actcgccaac catttttgcg
    19261 tacacaatga tgtttatgtc attgtaggca atcatggacc aatgattgaa caactagatg
    19321 caagagttaa tgtaattatt atcgaacatt tagtaggtcc aattgacttt aaacaagata
    19381 ttttagctgt caaagtgtta gcacagttat tctcgaaaat taaacctgat gttatccatt
    19441 tacattcttc caaagctgga acggtcggac gaattgcgaa gttcatttcg aaatcgaaag
    19501 acacacgtat agtttttact gcacatggat gggcttttac agagggtgtt aaaccagcta
    19561 aaaaatttct atatttagtt atcgaaaaat taatgtcact tattacagat agcattattt
    19621 gtgtttcaga tttcgataaa cagttagcgt taaaatatcg atttaatcga ttgaaattaa
    19681 ccacaataca taatggtatt gcagatgttc ccgctgttaa gcaaacgcta aaaagccaat
    19741 cacataacaa tattggcgaa gtagttggaa tgttgcctaa taaacaagat ttacagatta
    19801 atgccccgac aaagcatcaa tttgttatga ttgcaagatt tgcttatcca aaattgccac
    19861 aaaatctaat cgcggcaata gagatattga aattacataa cagtaatcat gcgcatttta
    19921 catttatagg cgatggacct acattaaatg attgtcagca acaagttgta caagctgggt
    19981 tagaaaatga agtcacattt ttgggcaatg tcattaatgc gagtcattta ttatcacaat
    20041 acgatacgtt tattttaata agtaagcatg aaggtttgcc aattagcatt atagaagcta
    20101 tggctacagg tttgcctgtt atagccagtc atgttggcgg tatttcagaa ttagtagctg
    20161 ataatggtat atgtatgatg aacaaccaac ccgaaactat tgctaaagtc ctggaaaaat
    20221 atttaataga cagtgattac atcaaaatga gtaatcaatc tagaaaacgt tatttagaat
    20281 gttttactga ggagaaaatg attaaagaag tggaagacgt ttataatgga aaatcaacac
    20341 aatagtaaat tactaacatt gttacttatc ggtttagcgg tttttattca gcaatcttcg
    20401 gttattgccg gtgtgaatgt ttctatagct gactttatca cattactaat attagtttat
    20461 ttactgtttt tcgctaacca tttattaaag gcaaatcatt ttttacagtt tttcattatt
    20521 ttgtatacat atcgtatgat tattacgctt tgtttgctat tttttgatga tttgatattt
    20581 attacggtta aggaagttct tgcatctaca gttaaatatg catttgtagt catttatttc
    20641 tatttaggga tgatcatctt taagttaggt aatagcaaaa aagtgatcgt tacctcttat
    20701 attataagca gtgtgactat aggtctattt tgtattatag ctggtttgaa caagtcccct
    20761 ttactaatga aattgttata ttttgatgaa atacgttcaa aaggattaat gaatgaccct
    20821 aactatttcg cgatgacaca gattattaca ttggtacttg cttacaagta tattcataat
    20881 tacatattca aggtccttgc atgtggtatt ttgctatggt ctttaactac aacggggtct
    20941 aagactgcgt ttatcatatt aatcgtctta gccatttatt tctttattaa aaagttattt
    21001 agtagaaatg cggtaagtgt tgtgagtatg tcagtgatta tgctgatatt actttgtttt
    21061 accttttata atatcaacta ctatttattc caattaagcg accttgatgc cttaccgtca
    21121 ttagatcgaa tggcgtctat ttttgaagag ggctttgcat cattaaatga tagtgggtct
    21181 gagcgaagtg ttgtatggat aaatgccatt tcagtaatta aatatacact aggttttggt
    21241 gtcggattag tggattatgt acatattggc tcgcaaatta atggtatttt acttgttgcc
    21301 cataatacat atttgcagat ctttgcggaa tggggcattt tattcggtgc attatttatc
    21361 atatttatgc tttatttact gtttgaatta tttagattta acatttctgg gaaaaatgta
    21421 acagcaattg ttgtaatgtt gacgatgctg atttactttt taacagtatc atttaataac
    21481 tcaagatatg tcgcttttat tttaggaatt atcgtcttta ttgttcaata tgaaaagatg
    21541 gaaagggatc gtaatgaaga gtgattcact aaaagaaaat attatttatc aagggctata
    21601 ccaattgatt agaacgatga caccactgat tacaataccc attatttcac gtgcatttgg
    21661 tcccagtggt gtgggtattg tttcattttc tttcaatatc gtgcaatact ttttgatgat
    21721 tgcaagtgtt ggcgttcagt tatattttaa tagagttatc gcgaagtccg ttaacgacaa
    21781 acggcaattg tcacagcagt tttgggatat ctttgtcagt aaattatttt tagcgttaac
    21841 agtttttgcg atgtatatgg tcgtaattac tatatttatt gatgattact atcttatttt
    21901 cctactacaa ggaatctata ttataggtgc agcactcgat atttcatggt tttatgctgg
    21961 aactgaaaag tttaaaattc ctagcctcag taatattgtt gcgtctggta ttgtattaag
    22021 tgtagttgtt atttttgtca aagatcaatc agatttatca ttgtatgtat ttactattgc
    22081 tattgtgacg gtattaaacc aattaccttt gtttatctat ttaaaacgat acattagctt
    22141 tgtttcggtt aattggatac acgtctggca attgtttcgt tcgtcattag catacttatt
    22201 accaaatgga cagctcaact tatatactag tatttcttgc gttgttcttg gtttagtagg
    22261 tacataccaa caagttggta tcttttctaa cgcatttaat attttaacgg tcgcaatcat
    22321 aatgattaat acatttgatc ttgtaatgat tccgcgtatt accaaaatgt ctatccagca
    22381 atcacatagt ttaactaaaa cgttagctaa taatatgaat attcaattga tattaacaat
    22441 acctatggtc tttggtttaa ttgcaattat gccatcattt tatttatggt tctttggtga
    22501 ggaattcgca tcaactgtcc cattgatgac cattttagcg atacttgtat taatcattcc
    22561 tttaaatatg ttgataagca ggcaatattt attaatagtg aataaaataa gattatataa
    22621 tgcgtcaatt actattggtg cagtgataaa cctagtatta tgtattattt tgatatattt
    22681 ttatggaatt tacggtgctg ctattgcgcg tttaattaca gagtttttct tgctcatttg
    22741 gcgatttatt gatattacta aaatcaatgt gaagttgaat attgtaagta cgattcaatg
    22801 tgtcattgct gctgttatga tgtttattgt gcttggtgtg gtcaatcatt atttgccccc
    22861 tacaatgtac gctacgctgc tattaattgc gattggtata gtagtttatc ttttattaat
    22921 gatgactatg aaaaatcaat acgtatggca aatattgagg catcttcgac ataaaacaat
    22981 ttaagtaccg gtaatgctat actttagaaa attaagatta agaagaaaag gcaatttctt
    23041 attgaaaaat ggaagttgtc ttttttaatt ctctttaaaa gcgggaaaca aaagcagtta
    23101 aatgcctttt tgcattcaat attaaatatt atatcaattt cg
//
LOCUS       DAMQWL010000031        22927 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.031, whole genome shotgun sequence.
ACCESSION   DAMQWL010000031 DAMQWL010000000
VERSION     DAMQWL010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 22927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22927
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.031"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(89..949)
                     /locus_tag="PF788_001122"
     CDS             complement(89..949)
                     /locus_tag="PF788_001122"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002468309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HDG6303392.1"
                     /translation="MPLVSMKEMLIDAKENGYAVGQYNINNLEFTQAILEASQEENAP
                     VILGVSEGAARYMSGFYTIVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFT
                     SVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKE
                     CQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKD
                     IQKAIPFGTAKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKI
                     KEFGTSNRAK"
     gene            1167..1688
                     /locus_tag="PF788_001123"
     CDS             1167..1688
                     /locus_tag="PF788_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2529 domain-containing protein"
                     /protein_id="HDG6303393.1"
                     /translation="MSKILNTQLIGIFNRLEKQSLEIQMAAQCLIQAIGGEGYVYVKG
                     YDDLQFFESFILHSDERLKSSRKLDAIKDFKEIDSTDRVLLFAPFYNDQVALDIQKLI
                     DLDIDVVLISNKPKTDDFPDHLVHFIDLSTPRPIVYTEDYDKIVQPHAMALNYVYYDI
                     YTQMIEMTRDLEL"
     gene            complement(1797..3407)
                     /locus_tag="PF788_001124"
     CDS             complement(1797..3407)
                     /locus_tag="PF788_001124"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HDG6303394.1"
                     /translation="MTKFIFVTGGVVSSLGKGITASSLGRLLKDRGLNVTIQKFDPYL
                     NVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNKFSNVTAGKVYSHVLKKE
                     RRGDYLGGTVQVIPHITNEIKERLLLAGESTNADVVITEIGGTTGDIESLPFIEAIRQ
                     IRSDLGRENVMYVHCTLLPYIKAAGEMKTKPTQHSVKELRGLGIQPDLIVVRTEYEMT
                     QDLKDKIALFCDINKESVIECRDADSLYEIPLQLSQQNMDDIVIKRLQLNAKYETQLD
                     EWKQLLDIVNNLDGKITIGLVGKYVSLQDAYLSVVESLKHAGYPFAKDIDIRWIDSSE
                     VTDENAAEYLADVDGILVPGGFGFRASEGKISAIKYARENNVPFFGICLGMQLATVEF
                     SRNVLGLEGAHSAELDPATPYPIIDLLPEQKDIEDLGGTLRLGLYPCSIKEGTLAQDV
                     YGKAEIEERHRHRYEFNNDYREQLEANGMVISGTSPDGRLVEMVEIPTNDFFIACQFH
                     PEFLSRPNRPHPIFKSFIEASLKYQQNK"
     gene            complement(3743..4273)
                     /locus_tag="PF788_001125"
     CDS             complement(3743..4273)
                     /locus_tag="PF788_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HDG6303395.1"
                     /translation="MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALG
                     DYEYEEIENRVVQFYTDLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILD
                     ADDEEDQNLKLLGEDEMDDDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDE
                     LDEDEEVFEDEEDFND"
     gene            complement(4385..5245)
                     /locus_tag="PF788_001126"
     CDS             complement(4385..5245)
                     /locus_tag="PF788_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6303396.1"
                     /translation="MAKELCFEGITLKAFDEQYRSAINDFDLNERQQIYSSLPKEVID
                     DAINDADRIANVAINDKNEVVGFFVLHRYYQHEGYDTPENVVYIRSLSINEKYQGFGY
                     GTKIMMSLPQYVQGVFPDFNHLYLVVDAENDNAWNLYERAGFMHTATKEEGPIGKERL
                     YYLDLDSKHVSSLKLEEESRSEVTNVHIINLMIDGQKVGFIALEQIGERMNIAAIEVD
                     KSYRFNGIGSSALRQLPTYLRKNYDNLNVITMILFGENNDFKPLCLNSNFVEIEQTDD
                     YVVFEKYLNY"
     gene            5669..6472
                     /gene="coaW"
                     /locus_tag="PF788_001127"
     CDS             5669..6472
                     /gene="coaW"
                     /locus_tag="PF788_001127"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II pantothenate kinase"
                     /protein_id="HDG6303397.1"
                     /translation="MKVGIDAGGTLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQI
                     EKLCLTGGNAGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTS
                     LHYFDGQSQRRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIY
                     KDTEPPIPGDLTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTE
                     NIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLEK"
     gene            complement(6602..7273)
                     /locus_tag="PF788_001128"
     CDS             complement(6602..7273)
                     /locus_tag="PF788_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2750 domain-containing protein"
                     /protein_id="HDG6303398.1"
                     /translation="MSYKAYPFFRDILINECIYFASKNKKLVRLNYKSEAYVGVWTEE
                     SVAVSFLTSRDIPFDKVVKMDVDRFATYELDELFDEQDHIIMNQTMEEEGHLLNVVAV
                     TQEVMTELDKIRIKEFVQDVAKYDEVYGLTKKGSKQFILISENDSDEKKPHIMPVWSI
                     KNRALKVRDEDFEECDLITIEGSVFGEWLDELRDDHKAVAIDLKTGVVGTIVSAQKLS
                     NELTF"
     gene            complement(7672..8865)
                     /locus_tag="PF788_001129"
     CDS             complement(7672..8865)
                     /locus_tag="PF788_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDG6303399.1"
                     /translation="MTNNGNEPNLTLSDLYDKDVVYTSRPSYISNPWLKPDEHQSNFL
                     TGRELLIANQLPVIVHEASATDKLHQLFQVIGKEVPNSIYTFNNQQSYENLIKQLAHK
                     ENKKIYFQYIHDETILNQQYYALDKTLFVALNNKARIPEWTNGKFLPKRKVVKIEQFE
                     NEIKNWEFPLVIKPGDDLPTAGGYGVMICYHDADLQKAITRIKEATAETNSLIIEQKI
                     EEKANYCVQFAYSESLGIQYLGAATQLTDKYGFYNGNENTTNVPEHVIEAGRQIMENG
                     VNQGFFGVAGFDLLVDEDDNVYAIDLNFRQNGSTSMLLLANELNSGYQKFYSYHSKGD
                     NTHFFNTILKYVKEGSLYPLSYYDGDWYGEDKVKSRFGCIWHGDSKETVLENERAFLA
                     ELEHY"
     gene            complement(8865..10049)
                     /locus_tag="PF788_001130"
     CDS             complement(8865..10049)
                     /locus_tag="PF788_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HDG6303400.1"
                     /translation="MSEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLID
                     RLKEHDFEIETEIAGHATGFIATYDSGLDGPAIGFLAEYDALPGLGHACGHNIIGTAS
                     VLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALMIHPGNE
                     TYKTIDTLAVDVLDVKFYGKSAHASENADEALNALDAMISYFNGVAQLRQHIKKDQRV
                     HGVILDGGKAANIIPDYTHARFYTRAMTRKELDILTEKVNQIARGAAIQTGCDYEFGR
                     IQNGVNEFIKTPKLDDLFAKYAEEVGEAVIDDDFGYGSTDTGNVSHVVPTIHPHIKIG
                     SRNLVGHTHRFREAAASVHGDEALIKGAKIMALMGLELITNQDVYQDIIEEHAHLKGN
                     GK"
     gene            10360..10830
                     /locus_tag="PF788_001131"
     CDS             10360..10830
                     /locus_tag="PF788_001131"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDG6303401.1"
                     /translation="MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQ
                     PNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMGCQTGFYVSFINHDNYDDVLNIV
                     EATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK"
     gene            complement(10982..11332)
                     /locus_tag="PF788_001132"
     CDS             complement(10982..11332)
                     /locus_tag="PF788_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303402.1"
                     /translation="MNILRYLLGIGFSVIGVLHFTRERQFRNIIPKCLPLRKTAVLVT
                     GIFEILFGLALLIKRPSQCLKNTINLFLLAVFPANIYMAVKKLPLGDKQLPTWQLYLR
                     LPMQFVLMGLIKKL"
     gene            complement(11346..12647)
                     /locus_tag="PF788_001133"
     CDS             complement(11346..12647)
                     /locus_tag="PF788_001133"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HDG6303403.1"
                     /translation="MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMA
                     IYFQDMNDDERAALTMAMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAV
                     DVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPA
                     DKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALA
                     HAMVRIGNNVGRNTMAIISDMNQPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLG
                     SQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDETVIDHPERLPQAQY
                     QIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGE
                     SLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIITE"
     gene            complement(12926..13588)
                     /gene="deoC"
                     /locus_tag="PF788_001134"
     CDS             complement(12926..13588)
                     /gene="deoC"
                     /locus_tag="PF788_001134"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDG6303404.1"
                     /translation="MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVK
                     YAAERLADSEVLVCTVIGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRF
                     DDVQQDIEAVVKAAKGHTVKVIIETVLLDHDEIVKASELTKTAGADFVKTSTGFAGGG
                     ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADS
                     DY"
     gene            13903..14613
                     /gene="deoD"
                     /locus_tag="PF788_001135"
     CDS             13903..14613
                     /gene="deoD"
                     /locus_tag="PF788_001135"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDG6303405.1"
                     /translation="MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFND
                     VRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVN
                     LYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSD
                     TFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPE
                     ERQNSFTQMMEIALEIAE"
     gene            complement(14734..15177)
                     /locus_tag="PF788_001136"
     CDS             complement(14734..15177)
                     /locus_tag="PF788_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDG6303406.1"
                     /translation="MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKF
                     EELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDF
                     TNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS"
     gene            complement(15377..15790)
                     /locus_tag="PF788_001137"
     CDS             complement(15377..15790)
                     /locus_tag="PF788_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol-disulfide oxidoreductase DCC family
                     protein"
                     /protein_id="HDG6303407.1"
                     /translation="MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFK
                     QHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRM
                     FANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD"
     gene            complement(16248..17621)
                     /locus_tag="PF788_001138"
     CDS             complement(16248..17621)
                     /locus_tag="PF788_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HDG6303408.1"
                     /translation="MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRA
                     FKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKR
                     SEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIY
                     THTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNST
                     VIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGL
                     KSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPD
                     FSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLE
                     GYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTR
                     IVKVKHD"
     gene            complement(18293..18523)
                     /locus_tag="PF788_001139"
     CDS             complement(18293..18523)
                     /locus_tag="PF788_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303409.1"
                     /translation="MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAM
                     LTFKDKQISASLKFSALLINVLPLCGTFVASN"
     gene            complement(18554..19492)
                     /locus_tag="PF788_001140"
     CDS             complement(18554..19492)
                     /locus_tag="PF788_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001620169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I mannose-6-phosphate isomerase"
                     /protein_id="HDG6303410.1"
                     /translation="MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGT
                     SEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYE
                     HENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEF
                     YFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNA
                     PLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMI
                     VDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV"
     gene            complement(19927..20592)
                     /locus_tag="PF788_001141"
     CDS             complement(19927..20592)
                     /locus_tag="PF788_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDG6303411.1"
                     /translation="MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQG
                     MKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKE
                     ANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAA
                     GSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFEN
                     ETD"
     gene            20744..21064
                     /gene="czrA"
                     /locus_tag="PF788_001142"
     CDS             20744..21064
                     /gene="czrA"
                     /locus_tag="PF788_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)-responsive metalloregulatory
                     transcriptional repressor CzrA"
                     /protein_id="HDG6303412.1"
                     /translation="MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGH
                     ISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPK
                     ESGL"
     gene            21066..22046
                     /gene="czrB"
                     /locus_tag="PF788_001143"
     CDS             21066..22046
                     /gene="czrB"
                     /locus_tag="PF788_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family zinc efflux transporter CzrB"
                     /protein_id="HDG6303413.1"
                     /translation="MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLA
                     NSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFV
                     ISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAF
                     LHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEG
                     TPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLE
                     NIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH"
     gene            22312..>22927
                     /locus_tag="PF788_001144"
     CDS             22312..>22927
                     /locus_tag="PF788_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDG6303414.1"
                     /translation="MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKY
                     AQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVK
                     FTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYAD
                     STHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVEST"
BASE COUNT         7250 a         4304 c         3189 g         8184 t
ORIGIN      
        1 gacataaaaa agaagcaaac accattttgt ctgcttcttt taaaattaat atccctacgt
       61 tattaataac ttaaagacta aatattaatt atttagcgcg gttagaagta ccgaactctt
      121 taattttacc tttaactgtt tctttgatgg cttcacgtgc aggtcctaag tatttacgag
      181 gatcgtaaac ttctttgtcg ttatttaaaa cgtcacgaac tgcttttgct gaagcgattt
      241 ggttttcagt gtttacgtta attttagctg taccaaatgg aattgctttt tggatatctt
      301 tagtcgggat accagtacca ccgtgtaata ctaatggtaa acctgtagat aaaccgattt
      361 cttccatttc tttaaatcct aattttggtt cacctttgta tggaccatga actgaaccta
      421 atgctggcgc taatgcatca ataccagttt tttcaactag ttcttgacat tctttaggat
      481 cagcataaat gatgccgtct gctacaacat catcttcttg tccaccaaca gtacctaatt
      541 cagcttctac agaaacacct ttttcatgag cgtattcaac aactttttta gttgttgcta
      601 cgttttcttc gaatgggctg tgtgaagcat cgatcattac tgatgtgaaa ccagcatcga
      661 tagcttcttt acatttttca aagcttgaac catggtctaa atggattgct acaggaatag
      721 tgatgtttaa gtcatgcatt aacccttcaa ccattttaac aattgtgtag aaaccgctca
      781 tgtaacgagc agcaccttca gaaacaccta aaattacagg tgcattttct tcttgtgacg
      841 cttctaaaat tgcttgagtg aattctaggt tattaatatt gtattgacct accgcataac
      901 cattttcttt tgcatcaatt aacatttctt tcattgaaac taaaggcatg aaagttcctc
      961 cttgagtgct tacgcacgta tttttcaaag taattatatc aaaaaaatag cgtcaatgca
     1021 ttgaaatact gcagattaaa tgtgtatttt ttgaaaaatg cgatagttat actaaatgca
     1081 aacgtataca tttttataca atttaagccg ttgcataata tgtagtcatt aattacaata
     1141 ttttataagt agattggagg ataaagatgt caaaaatctt aaacacacaa ctaataggta
     1201 tctttaatag gctagaaaaa caatctttag aaattcaaat ggccgcccaa tgtttaattc
     1261 aagcaattgg tggcgaaggt tatgtttatg taaaaggtta tgatgattta cagtttttcg
     1321 aaagtttcat tctacatagt gatgagcgtt taaaatctag ccgaaaactt gacgctatta
     1381 aagactttaa agaaattgac tcaactgatc gtgtattatt attcgcacca ttttataatg
     1441 atcaagttgc attagatatt caaaaactta tcgacttaga tatcgatgtg gtcttaataa
     1501 gcaacaaacc taaaacagat gatttccctg atcatctcgt acattttatc gatttatcta
     1561 caccaagacc tatagtctac actgaagatt acgataagat tgtccaacca catgcgatgg
     1621 cattgaatta tgtatactat gacatttata cacaaatgat tgaaatgaca agagacttag
     1681 aattataaaa gtcactattg ttatttcata ccttgtcact aacataatat taaaattata
     1741 cgaaaaaccg gtactttcaa tgtttaacaa tgaaagtacc ggttttatta gcaaatttat
     1801 ttattttgtt gatattttaa tgaagcttca ataaatgatt taaaaatcgg gtgcggacga
     1861 tttggtctag ataagaattc tgggtggaat tgacaagcaa taaagaaatc atttgtcgga
     1921 atctctacca tttctactaa acgtccatct ggacttgtac cagaaatcac cataccattt
     1981 gcttctaatt gttctctata gtcattatta aattcataac gatgacgatg tctttcttca
     2041 atttccgctt taccataaac atcttgtgcc aatgtgcctt ctttaattga acatggatat
     2101 aagcctaagc gtaatgtacc acctaaatct tcgatatctt tttgttctgg taataaatct
     2161 ataattgggt atggtgttgc tgggtctaat tcagctgaat gtgcgccttc aaggcctaat
     2221 acgtttcttg aaaattcaac tgttgcaagt tgcattccta aacaaatacc aaagaatggt
     2281 acattgtttt ctctagcata cttaattgca ctaattttac cttcacttgc acggaaacca
     2341 aatccacctg gtactaaaat accgtcgaca tctgcaaggt attcggctgc attttcatct
     2401 gttacttcac ttgaatcaat ccatctaatg tcaatatctt tggcaaaagg atatccagca
     2461 tgtttcaatg attcaacaac tgataaatat gcatcttgta agctaacata tttacctact
     2521 aaaccaattg taattttacc atctaaatta ttaacgatat ctaacaactg tttccattca
     2581 tcaagctgtg tttcatattt cgcgtttaat tgtaaacgtt taataacgat atcatccata
     2641 ttttgttggc ttaattgtaa tggaatttcg tataaagagt ctgcatcacg acattcaata
     2701 acactttctt tattaatgtc acagaataat gcaattttat cttttaaatc ttgtgtcatt
     2761 tcatattcag ttcttacaac gattaagtct ggttgaatac ctaagcctcg taattcttta
     2821 acactatgtt gtgttggctt cgttttcatt tctccagcag ctttaatata aggcagtaat
     2881 gtacagtgaa catacataac attttctcta cctaaatcgc tacgaatttg acgaatcgct
     2941 tcaataaacg gtaatgactc aatatcacct gttgtaccgc caatttcagt gataacaacg
     3001 tctgcattcg tactttcccc tgcaagtaat aaacgttctt taatttcatt tgtaatatgc
     3061 ggaataactt gaactgttcc gcctaagtaa tcaccacgac gttctttttt caatacgtgt
     3121 gaatacactt taccggctgt cacatttgaa aacttgttta aattaatatc aataaatctt
     3181 tcgtaatgtc ctaagtctag gtcagtttct gcaccatcat ccgttacgaa tacttcacca
     3241 tgttgataag gactcattgt acctgggtca acatttaagt atggatcgaa tttttgaatt
     3301 gttacattta gacctctatc ttttaataat ctacctagag aagatgctgt aatacccttc
     3361 cctaatgatg aaactacgcc acctgttaca aaaataaatt ttgtcatgtc ttgacctcct
     3421 aattattaaa gggaatgctt cctcatcaat tgtaaaaatt acgtaaaaca taacattaaa
     3481 gcaagctcat tcaagttgtt tatttgtcga attcgacaaa attaaattct gtttacttac
     3541 cgtttccata ctgctatgtc actatgtata tcatttacaa ctttgatttt tgcgttatca
     3601 tttcttgatt tactcaatta aataaaaaaa cgctccctct cacaaattct gtaaggggag
     3661 cgtataaatt ttatacacgt gtcctattta aaggagcccg aataaaattt tatcatcttt
     3721 caactaaaag tcaaacaaaa aattaatcgt tgaagtcttc ttcgtcttca aacacttctt
     3781 cgtcttcgtc tagttcatct tcatcttctt caatgactat atccgaatga ttgatttctt
     3841 cttcaacctg ctcatcttct ggatcattta gttcttcttg atcatctgtt tgagctggaa
     3901 tatcatcgtc gtcatccatt tcatcttcgc ccaataattt taagttttga tcttcttcat
     3961 catctgcatc cagaatatcg aatttttgaa tagttggtgc gattttctct tcaatatcat
     4021 ctaccgaata ccaatcacgt aatccccata aattttctcc aacatttaaa aaacgaccat
     4081 ctgtgtttaa atccgtgtaa aattgtacaa cacgattttc aatttcttcg tactcataat
     4141 cacctaacgc tctaaattca tcgatgatat catataagtt cattgtttcg cctttatcat
     4201 tcaataatgt ataagccata tcaataaatg atttttcatc aaccatttgt tttgtataat
     4261 cttgaatttt cattgcccaa tacttccttt cgaaggatat aatctaaatt tatacgtctg
     4321 aattcattta tatatagtaa caaaactaaa ttataaatga caatatcata tttcgcaatc
     4381 actgttagta atttaaatat ttttcgaaaa cgacataatc atcagtttgt tcgatttcaa
     4441 cgaaattact atttaaacat aatggtttaa aatcattatt ctctccaaac agaatcatcg
     4501 taatcacatt aaggttgtca tagttttttc ttaagtaagt tggcaattgt cgcagagcac
     4561 ttgaaccaat accattaaag cgatatgatt tatccacttc aatagcagca atgttcatgc
     4621 gttcaccaat ctgctccaat gcgataaagc caaccttttg gccatcaatc attaaattaa
     4681 tgatatgtac attggtcact tctgaacgac tttcttcttc aagctttaat gatgaaacat
     4741 gttttgaatc taagtccaag taatatagtc gttctttgcc aattggtcct tcttctttag
     4801 tcgctgtatg catgaatcca gcacgttcgt ataggttcca agcattgtca ttttccgcat
     4861 ctactactag atatagatga ttaaaatcag gaaatacacc ttgaacatat tgcggcaatg
     4921 acatcattat tttcgtgcca tatccaaaac cttgatattt ttcattaatc gataatgaac
     4981 gaatataaac gacattttca ggtgtatcat aaccttcatg ctgatagtaa cgatgtaata
     5041 caaaaaagcc caccacttca tttttatcgt ttattgctac gttagcaatc ctatcagcat
     5101 cattaattgc atcatcaata acttctttag gtaaagatga atatatttgt tgtctttcat
     5161 tcaagtcaaa atcattaatt gctgaacgat attgttcatc aaatgctttt aaagtgatac
     5221 cttcaaaaca aagttcttta gccatatatt taacccctat ctttttatat atgaagcatg
     5281 aatccccata ttattttacc tattatttca ctacgatacc attatttgct ctaagttaaa
     5341 taaattactt atttatattt tttaaatttc aaaattaatg tactattcct cattacttat
     5401 cattttaatc agagacttac aaatacactg cgtacgaact acttttaata ttgcgtcact
     5461 aactaacaat cctatacaac ttcaaaattc ctagaaaata atatatataa cttaacgtcc
     5521 acgtttgtaa aacattaatt gcgatacgct tacaatgttg aaatgcaatg gcatcaaatt
     5581 tgttaataat tactattatt acttgttttt tagtcatttt actatactat tatttaagga
     5641 tagacattaa taatgaggtg ggaatcttat gaaagttggc attgacgctg gcggtacact
     5701 aattaaaatc gttcaagagc aagataacca acgtactttt aaaactgaat taactaaaaa
     5761 tattgatcaa gttgtggaat ggttaaacca acagcaaatt gaaaaattat gcttaactgg
     5821 aggtaatgca ggtgtcattg ctgaaaacat caacattcct gcacaaattt ttgtagagtt
     5881 tgatgctgca tctcaaggac taggtatttt gttaaaagag caaggccatg acttagcaga
     5941 ttatattttt gcaaatgttg gtaccggtac gtcactacat tatttcgacg gccaatcaca
     6001 acgtcgtgta ggcggtatcg gtacaggtgg aggcatgatt caaggactcg gttatttact
     6061 aagtcaaatc actgattata aacagttaac tgacatggca caacacggtg atcgtaacac
     6121 tatcgattta aaggttagac atatttataa agataccgaa ccacccattc ccggtgattt
     6181 aacagcagct aattttggtc atgtactaca tcatttagat gctgatttta cacctagcaa
     6241 taaattagca gccgttattg gtgtcgttgg cgaagttgtt acgacaatgg ccattactgt
     6301 tgcacgtgaa tttaaaactg aaaatatcgt ttatatcggt tcttcatttc ataataacgc
     6361 tttattacgc aaagttgtgg aagattatac tgtgttacgc ggttgcaaac cgtactatgt
     6421 tgaaaacggc gcattttcag gtgctattgg tgcattatat ttagaaaaat agaaaaagac
     6481 catttatatg cgcgttgttt taaataaacg ctatataaat ggccttttat tttatggtct
     6541 aagtgttttg aatacgtatt gttccattta ttatcactta attacttaca actcaattca
     6601 attaaaatgt aagttcatta gacaattttt gcgctgaaac aattgtacca accacgccag
     6661 tttttaaatc tatcgcaacg gctttatgat catctctaag ttcatctagc cattctccga
     6721 aaacagaacc ttcaatcgta attaaatcac actcttcaaa atcttcatct cgaactttta
     6781 acgctctgtt tttaatactc catacaggca taatatgcgg ctttttttcg tcgctatcat
     6841 tttcactaat gagaataaac tgcttactac cttttttagt taagccgtat acttcatcat
     6901 atttcgctac atcttggaca aattctttga ttctaatttt atctaattcc gtcatcactt
     6961 cttgtgtaac agctacaacg tttagtagat gcccttcttc ttccattgtt tgattcataa
     7021 taatatggtc ttgttcatca aacaattcat ctaattcata agtagcaaaa cgatcaacgt
     7081 ccatttttac aactttatca aatggaatat cacgacttgt taaaaatgat acggccacac
     7141 tttcttctgt ccaaacgcct acatacgctt cacttttata atttaggcgt actagttttt
     7201 tatttttaga ggcgaaataa atacattcat ttattaatat atctctaaag aatggatatg
     7261 ctttataaga catgcttgac cctcactttt taaaatatgt catacataaa atagtaaatg
     7321 actccaacaa gttagtcaat tagacatatt atgaattcaa tttaatgtca tgtttttcat
     7381 tttaaaaatt caatagcatt aaattttacg tatacacaaa ttcggtctat aacacgaaac
     7441 atatctagtt actaaaaatt tcaaaacgat aacctttagt atacctttat caacaaaatg
     7501 gcaactctta taacatagtg aaataaaagt cgccatttaa tattagtatt acaaagtatt
     7561 gccatatcat aaatttaatt actgttgact agaatcgaaa aaagcttgtt acaaacgcat
     7621 attcagtcaa ctactggcaa cacaacattg tagcgcctta tgttccgaac tctaatagtg
     7681 ttcaagttca gctaaaaatg cgcgttcatt ctccagtact gtttcttttg aatcaccatg
     7741 ccaaatacag ccaaaccttg atttaacttt atcttcaccg taccaatcac catcataata
     7801 agataacggg tataaactac cttctttgac atatttcaaa atcgtattga agaaatgtgt
     7861 gttatcacct tttgaatgat aactataaaa cttttgatat cctgaattca actcgttagc
     7921 aagtaataac atgctcgttg aaccattttg tctaaagttt aaatcaatcg cataaacgtt
     7981 atcatcctca tcgacgagta ggtcaaaacc agctacacca aagaatcctt gattcacacc
     8041 gttttccata atttgtctac ctgcttctat aacgtgctct ggtacattag tagtattttc
     8101 atttccgtta taaaatccgt acttatccgt taattgcgtt gccgcaccaa gatattgaat
     8161 gcctagcgat tccgagtatg caaactgaac gcaataattc gctttttctt caatcttctg
     8221 ttcgataata agcgaattcg tttcagcagt tgcctcttta atacgcgtta tcgctttttg
     8281 taaatctgca tcatgataac aaatcataac gccatagcca cctgctgtcg gaagatcatc
     8341 tcccggctta attactaacg ggaattccca attcttaatc tcgttttcga attgctcaat
     8401 ttttacaact tttctttttg gtaaaaactt cccatttgtc cattcaggta ttcttgcttt
     8461 attatttaaa gcaacaaata acgttttatc taatgcataa tattgctgat tcaagattgt
     8521 ttcatcatga atatattgaa aataaatctt tttattttcc ttatgtgcca attgtttgat
     8581 caagttttcg taagattgct gattgttaaa tgtataaatt gagttcggta cttccttacc
     8641 aataacttga aatagctgat gcaatttgtc tgtcgcacta gcttcgtgaa caataacagg
     8701 taattgattt gctattaata actccctacc agttaaaaaa ttagattgat gttcgtccgg
     8761 tttcaaccat ggattcgata tatacgaagg tcttgacgta tagacaacat ctttgtcata
     8821 taaatcactt aacgttaagt tcggctcatt accattattt gtcattactt cccattccct
     8881 ttcaaatgcg catgctcttc aataatgtct tgataaacgt cttgatttgt aattaactct
     8941 aaccccatca acgccattat tttagcgcct ttaattaatg cttcatcacc atgtacactc
     9001 gcagccgctt ctctaaatct atgcgtatgt cctactaaat tacgtgatcc tattttaata
     9061 tgaggatgta ttgttggcac aacatgactt acgttccctg tatccgtaga gccataacca
     9121 aaatcatcat caataactgc ttcaccaact tcttcagcat atttagcaaa taaatcatct
     9181 aatttcggcg ttttaatgaa ttcattcaca ccgttttgaa ttcgaccaaa ttcataatca
     9241 caaccagtct gtatcgcagc tccacgtgcg atttgattta ctttttctgt taatatatcc
     9301 aattctttac gcgtcattgc tctagtataa aaacgagcat gtgtatagtc tggaataata
     9361 ttagctgctt tcccgccatc taaaatcaca ccatgcacac gttgatcttt tttaatatgt
     9421 tgtcgtagtt gtgctacacc attaaaataa ctaatcatag cgtctaatgc atttaacgct
     9481 tcatctgcat tttcagaggc atgagcactt tttccgtaaa atttaacatc taaaacatcc
     9541 actgccaaag tatcaatcgt tttataagtt tcatttcccg gatgaatcat taaggcaatg
     9601 tctatttgat caatcacacc agccttgaca taagaagctt tagcgctacc attttcccca
     9661 ccttcttcag ctggacatcc aagaacgact actttaccac caatttggtc aatcacttgc
     9721 ttcaaaccaa ttgcaccaag aacacttgca gttccaatga tattatgacc acaagcatga
     9781 cccaatcctg gcaaagcatc gtattctgct aaaaaaccta tagctggccc gtcaagtcct
     9841 gaatcatatg tcgctataaa cccagttgca tgcccagcaa tctcggtttc aatttcaaaa
     9901 tcatgctctt tcaaacgatc tattaaagtt cgagacgcaa atatttcttc attaccaagt
     9961 tcaggacgtt catgaattct atgactgatt tcgatataac tatatttatt tgtttctata
    10021 taatcgagaa tttgttgttt ttcactcatt ttttactatc tcccttttac cctacactca
    10081 ttttaatcat ccacaatatt ttgttctttc aaaatgaatt attacttatt ctatcggttt
    10141 tatctcatga tgtcatctag tttttcttta tttacaaaat tttctaataa ctaaaagcct
    10201 ttcataaatt tataaaacag tttcaaattg taaaacataa gccctattgt tacaatttaa
    10261 gtattgttag aaacacaact tacaacaaac ttaagtttta taatgcaaca aatcataagc
    10321 gttttatagt tttgagtagt taataggagg aaattcaaaa tgacaaaaat gaatgttgaa
    10381 agtttcaatt tagatcatac taaggtggtt gccccattta ttagattagc gggaacgatg
    10441 gaaggattaa acggagatgt cattcacaaa tacgacattc gtttcaaaca accaaacaaa
    10501 gaacatatgg atatgcccgg actacattca ttagaacatt taatggctga aaatattaga
    10561 aatcatagtg acaaagttgt tgatttaagt cctatgggtt gccaaactgg tttctatgta
    10621 tcatttatta atcatgataa ttatgatgat gtattaaata ttgttgaagc aactttaaat
    10681 gatgtgctaa atgctactga agtgcctgct tgtaatgaag tacaatgtgg ctgggcagca
    10741 agtcattcat tagaaggtgc taaaactatc gctcaagcat ttctagacaa acgaaacgaa
    10801 tggcatgatg ttttcggtac aggaaaataa atcttagtca atcaagttaa tcagaaaagc
    10861 agtcgaacaa tgattttaca atcgccattg tccaactgct ttttattatg cttcaaagtc
    10921 aaaaaatcga acaaatgaaa aagtaaaatc tttaacattt gtccgattta tttgagaacc
    10981 actataattt cttaattagt cccattaaca cgaactgcat aggtaacctt aaatatagtt
    11041 gccatgttgg caattgttta tctcctaaag gtaacttttt aactgccata tagatattag
    11101 ctgggaatac agctagcaag aatagattga ttgtattttt caagcattga gatggtcttt
    11161 taattaaaag tgcaagtcca aataatatct caaagattcc tgtaacaaga accgctgttt
    11221 ttcgaagtgg caaacatttc ggtatgatat ttctaaattg tcgttctcgt gtaaaatgca
    11281 atacacctat tacactaaaa cctattccta ataaatatct tagtatgttc aatcagcttc
    11341 aactcctatt ctgtaatgat tttatgaatt aatgtaggcg atacaacatg atcagcaatt
    11401 gttatgcttg aatctaattt tttaacaaca tcgtctacat cttggcgatt actgtgaatc
    11461 gttaataatg attctccttc ttctacttta tcaccaattt ttttatttaa aacaatacca
    11521 accgctaaat caatatcatc ctcttttgtt aaacgtcccg ctcctaacat catcgaagcg
    11581 acacctatat cgttagagac taattcagtc acataacctg attttttagc tttatattca
    11641 atttgatatt gagcttgtgg caaacgctct ggatggtcaa taacagtttc gtcgccacct
    11701 tggtttttaa taaatgtttt gaatttttct aatgctgcac ctgaattaat tgcctcaatt
    11761 agcaacgctc tcgcttcttc aagcgtttca gctttgtttg caagtacaac catttgagaa
    11821 cctaatgtta atacaagttc tgttaaatct ttcggacctt gtcctttcaa cgtatcaatt
    11881 gcttcttgta actcaagcgc attgccaatc gcacgtccaa gtggctgatt catatcagaa
    11941 ataatcgcca tcgtattacg tcccacatta ttaccaatac gtaccattgc gtgcgctaat
    12001 gcttcagcat cttctaatgt tttcataaat gcaccgctac cagtttttac atctaataca
    12061 attgcatctg caccagcagc aatcttttta ctcataattg aagaggcaat taatggtatt
    12121 gaattgacag taccagtaac atcccttaag gcatataatt ttttgtctgc aggagttaaa
    12181 tttcctgatt gtcctacaac tgccacttta ttttcattaa ccaatttcac aaatgttgct
    12241 tcatctattt caacatgaaa accatcaatt gcttctaatt tatcaatcgt accacctgta
    12301 tgacctaatc cacgcccact catttttgca acaggaacat ctacagctgc tactaatggt
    12361 gctaaaacca atgtagttgt atctcctaca ccacctgttg agtgcttatc tactttgaca
    12421 cctttaatat cactcaaatc tatcatatca ccagaattaa ccatagccat cgttaatgct
    12481 gcacgctcat catcattcat atcttggaaa taaatcgcca ttgctaaact tgatgcttgg
    12541 taatcaggaa tatccccttt aacatagccg ccaataaaga aattaatttc ttccgttgtt
    12601 agtgtatgac cgtcacgctt tttctcaata atgtctatca ttctcatttt tatcatcctt
    12661 ttcttaaaaa gcttaggaca aagcatctgc gctttctcta gtccattttt aaaagcacaa
    12721 gcgaaaatta ttatagcaag ctatcgattt catttttaat atcacaattt caatgcgatg
    12781 ttattattct taaatagatt ggttataacg ttaaagtccc tattaaatta tcttagaatc
    12841 atcatggcat ttatgatgtc ttaaagctga tatcgacata cttatatatg gttacgatgt
    12901 cccatgctta catattttta taaaattagt aatctgaatc tgcttctaaa ccttgcataa
    12961 tttgaacgcc tgcgctcgca ccaatacgtg tcgcacctgc ttcaaccatt ttattgaaat
    13021 cttctaaatt acgtacgcca cctgatgctt ttacttctac atcagcacct actgtatctt
    13081 tcattaattt aacgtcttct gcagtcgcac cgccacctgc aaaacctgtt gaagttttaa
    13141 cgaagtccgc accagccgtt tttgttaatt cactcgcttt tacaatttcg tcatggtcca
    13201 acaataccgt ctcaataatc acttttactg tgtgaccttt cgcagctttc accactgctt
    13261 caatgtcttg ttgtacatca tcaaaacgtc catcttttaa tgcgccgatg ttgatgacca
    13321 tgtcaatttc atctgcacca ttttgaatcg catcttctgt ttcaaatgct ttcgtcgcag
    13381 ttgtcgatgc acctaatggg aatcctatta ccgtacaaac taacacctct gaatcagcta
    13441 gtcgctctgc tgcatattta acatgcgttg gattcacaca tacagattta aaatggtatg
    13501 ctttcgcttc atcgatgatt tgatcgattt gcgtacgtgt tgactcaggc ttcaataaag
    13561 tgtgatcaat caattttgca ctattcattt tctatctcct cctttatggt tgattataaa
    13621 aatacggttg taaattagtt gattgagcgt caggttcatt taaatatcag gttagatgtt
    13681 cgctttttat gtaaccgcat acatatacta ttacattaat tcatttccca taaacaaaca
    13741 atacaattga acgtgatatc ttcattatga acgatgactt gacaacaagc taatcaggat
    13801 tatattttta taattcttta attctatagt acaaaaattc gcaaaaaagg gaaacaaatg
    13861 ttatcttaaa attattaatg aatattaagg agaagataac aaatgacaaa aggtacacca
    13921 catattcaac caaatggagt aaaaattgct aaaacagtat taatgcctgg cgatccgcta
    13981 cgtgcaaaat atattgctga taatttttta gaaaatgttg aacaatttaa cgatgtacgt
    14041 aacatgtttg gttacactgg tacatataaa ggtaaagaag tttctgtaat gggttctggt
    14101 atgggtattc caagtattgg tatttactca tatgagttat acaacttctt tgatgtagat
    14161 acaatcattc gtatcggttc ttgtggcgca ttacaagaaa atgttaactt atacgatgtt
    14221 attattgcac aagctgcatc aactaattca aattatgtag atcaatacaa tattccaggt
    14281 catttcgcgc ctatcgctga cttcgagtta gtaactaaag ctaaaaatgt cgctgaccaa
    14341 atcggtgcta ctacacacgt aggtaacgta ttatcttctg atacatttta caatgccgat
    14401 ccaacattca atgatgcttg gaaaaaaatg ggtattttag gtatcgaaat ggaatcagct
    14461 ggtttatatt taaatgcgat tcatgctggt aaaaaagcac ttggtatttt cacagtaagt
    14521 gatcatattt tacgtgacga agctactaca cctgaagaac gtcaaaattc atttacacaa
    14581 atgatggaaa tcgctttaga aatcgcagag taacttattt aaattgactt taattgctct
    14641 ttaacaatgc gattaaactc aaaaagccaa cacattctgg gcgtatcccc atttatgtgt
    14701 tggcttttat ttatattatt acttatctgt agattagctt aagtaagatt taaacatcca
    14761 attatgttta tctactgatg tttgcatacc tataaacata tcttctgata catcatcgcc
    14821 agcattacca gcaatttcga ttgcgttttc taattgtttt gagatatttg tgaagtcttg
    14881 tgataattct tcaaccattt gttctgcaga gtaacctttc gcagcttctt taacaattga
    14941 ttgctctaag cattcagtta atgtacctac agggtttcct cctaccgcta aaattctttc
    15001 agctaattcg tctacatatt ggcttgcttc attatataat tcttcaaatt taacgtgtaa
    15061 tgagaagaag ttaggccctt tcacatacca gtggaaattg tgtagctttg tgtaagctac
    15121 tgtccagttt gctacttgtt gattcaattc ttttacaaca tcttgttgat tactcatatt
    15181 taatacactc cttaaaattg tctacgtctt gcttgtttat attaattatt atattataat
    15241 aattctaatc tgtaaagtgt ttttgctctc ttttttataa ttattctaat ctaaccgtaa
    15301 agtgttccgc tatttaaatg cctaaatttt aattcatcat ctaatatatc cattatcaat
    15361 tagcaagtat gttttatcaa tcagtaagtt ttactttcgc attatcatct aaaaagaacg
    15421 atttttcata atcatttggt tggtgccatg ttgttttcca cattctattt ctattattag
    15481 caaacattcg ataaccgaaa ttacggactg gtttaggtac aagccataaa cctacgccca
    15541 ataatttagt tcgattaggt agtgctgtga ttagtttaat aatcgcctgc gattcaaaat
    15601 atatacgatc acctttctgt aaaatcacac tatttttatt tgccgcttct ggatgttgtt
    15661 taaaaaattg ttggccaact tcacctttta acgtggcaaa ttgataattt cttggtaggt
    15721 catgttgaat taaccaaatg acatagttat aacaatatat acagtttcca tcataatata
    15781 cgattggcat aatttattcg ctcctttaat agtacttata gtcatttttc ctaatttaaa
    15841 aacatttaaa caaggttgtc acttgataag tcctcgcgac acgaaattgc cataaaattt
    15901 atttttcagt tttatattta ttgtataatg tattttttat ttactttaaa tttctcaatc
    15961 tacagtgtaa tcttatttct tattattaac ttagcgtttg gtcattcgtc ttattcaaca
    16021 taccactgga aaactcatat aaagttttaa ttctgtaaca taaattcttt tatattcata
    16081 tactgtcttt attatttatt aaaataaaaa cgagtaatct atcataagct cttaattagc
    16141 tcttatggtt gattacccgt cattttttct ttatgcggtt attcaaatat gcaattatgc
    16201 aatttttaat cctatcctta cttcttttca aaaactacca tatatcatta gtcatgtttg
    16261 actttgacta tacgtgtgta ttttaaaaac tgctctgaat atttctcctt aatttcctct
    16321 aaactgtcat atgtaatacc tacaatatgc caattaggat tgaaataata gaaagaatct
    16381 ttttgtcgtg accatttaat catattaccg tctttattat aacgtggtaa tgttacttca
    16441 tagccttcta acacattaat atacgtttgg aaaatgtctg tatctatacg attaaaatta
    16501 tcaataacta aataactttt atccttttta ggcattaatt gagtaataaa cccttcacga
    16561 tagtataatg cccctgtttc atttggtaaa tacttgccat aaagcatatc ttctgaaaaa
    16621 tcaggatgac ctgttgttat aacaggattt gcattcgctt tttgcaataa gtcattagcc
    16681 gcttttaagc cttcttcttt tcgatctaca acaagtaaaa taaatggctt taacgcttct
    16741 tctttttcac tttcaagcat atctggtttt tgaaccattt caaatggaga tttcaatcca
    16801 ttattatcgc tcatttcaat aattgcatca tactgtgctt gtgacatact tgcaatagcc
    16861 tgttttgcat tttcttgaag gaaatataag tttttcaatt taggatgctt atttaatgta
    16921 cttaatgtaa tcggtgtaat gtctttctca taagacactt caatcactgt actatttgtt
    16981 ctaccaggaa ttggtggttt ttcatgaata tgctttgata cttctccaat tccaacgaca
    17041 gattgatttt tcgttcgatt ataaaaaata atattgtcgc cttcttctaa ctgagtataa
    17101 aaatgataac cattacgttt aataccgttg tacgtgtgcg tataaatcgt atattggttt
    17161 ccaggttcaa attcttcagt ttcagctaaa aagaaataac gcggtatctt aatttcgcct
    17221 ttaccaagac cacttattaa atcaaactct tctgcagtga tttgattgaa caatgtctct
    17281 ttcatattac ttatacgaaa ttccaaagct tcactacgct ttaaataatc tgctgttaat
    17341 ggtttcaatt gttcattaaa acgaaactgt acacgtattt tattttgtgc acctgtttca
    17401 acactaataa tttcaccaca tccaagtagt ccagtatccg tctgaacttg ataaaagatg
    17461 acttgatctc ctactttagc ctttttaaac gctctaaatc cttgagatgg gttaaaatgt
    17521 gcgcctgatt caaataaagc tgtttgtcct actaacggtt cattatgatt ccaacggtta
    17581 tatccacaat tcaaccaaaa ataattcgtt tctgctgtca tcttaatact ccttaacctg
    17641 aataaatttt agaaacacta tgaattacat tcttttagtg tttcttatgc agttggacgc
    17701 gtatgcgaac aactgtatac cctttgttca ctgcgatttt aatcgcattt cctataacat
    17761 tgtagcgccc aggacattaa tttacgtccc agacccttat cgttttcact tctaagtaag
    17821 tcgaactatt ttgctttaca acaagtgcga ctctaaatac agttggacac acatacgagc
    17881 aactgtatac cttttaatca gttttctata ttttatttat tatatctgtc ttaatgataa
    17941 aaattgttac aaacagttta acatatttag ctacctattt tgcatataaa aaacatgctt
    18001 gcatacacta tgcaataaaa attacaaatt tatatatgat accactatgc ttgcttatct
    18061 ctatagcgcc attgatacac atttttaaat atctatactg ccgttagaat tttatcatgt
    18121 cttaattttc attaaatatt aattacttca ttttatataa accaacaaaa accccctcac
    18181 tactatgcaa gtgagaggtt atgttgatgt gctttatttt catcaatgtc attaacacaa
    18241 tcatatttct tctgttaatg cactgtatta tattcaaacg cgctatcgac aattaatttg
    18301 aagctacaaa ggtaccgcat aatggcagca cattaattaa caatgcgcta aactttaatg
    18361 aggcgctgat ttgcttgtct ttaaaagtca acatagcact gataattcct aaaatagcta
    18421 ctatacgtgg aattgtcatg ctcggatact gcggtatatg taagaaagca ccaagacctg
    18481 ctatcacacc acatactaac gcaatatata gaaattgctt caaatcattc actcctaaat
    18541 tgttattaca ctattacaca tagctaatca tcaatgtgaa atcaccttca aagacactat
    18601 ccaaatcttc agaagtcaaa ataaagtttg taccagtagt cagtttgaaa atttcaccat
    18661 cgacaatcat ttgcccttcg ccttccaaca ctgtaactaa acagaactct ctaggcttca
    18721 tataatttaa cgtgccagaa atttcccatt taaccaatgt aaagaaatca ttcgatacaa
    18781 tgtgtgtaca cttatggttt tcaataattt cgctttcagg caaaatatta ggtaatggtg
    18841 cattgtactg aataacgtct aaagcttttt caatatttaa cggtctatca ttatattgat
    18901 tatcttgacg attgaaatca taaagtctat atgtaatgtc tgacgattgc atcgtttcgt
    18961 atgctaatat tcctgaagaa atagtatgta ctgttcctgc tggaataaaa tagaattctc
    19021 caggttttac tttaatatat ctaagtatcg actctatcgt tccgtgttga acatgattcg
    19081 caacttcttc tctagactct gctaatgtcc ctataactat ttctgcatct tcttctgcat
    19141 ctataatata ccaacattca gatttgccat attgcccgtt ttcatgctca taagcataag
    19201 aattatcagg gtgcacatga atagaaagtg attctcttgc atccactatt ttagttagaa
    19261 gcggaaaatc tttgcttggg aaatcaccaa acaattcacg atgttctgac caaatacggt
    19321 ctaatgtttg accttgatat ggtccattaa taatctcgct cgtaccattt ggatgtgctg
    19381 acacacacca acattcccca gttgtatcat tgtctaattg atatccaaac tcacttagac
    19441 gttgaccgcc ccataatttt gtttttaaaa ttggttgtaa aaataatggc attgttgcac
    19501 ctccattgtg attaagtaag caatagaact ctgatgttgt tgttccatta tattttgatt
    19561 ttgttctcat ttacatcgta ttattaactt ccacatttca aattaactat tagtgattgt
    19621 accatattta ctaacattgc agtactgcca attaaagcgc ttcacttaaa tttacagtac
    19681 tttaacattt tcaaaaattt atagcataga gattatatct ctcttacatt tgtacatatt
    19741 tccctttaaa tttactcgcc cattatacca attaataaac aactttaata gttgtgccat
    19801 acattgttca aattctttgt aaaacgcata gacaatacgt acttattcat acttataatt
    19861 catcattttc aaaaaataac gagttacgaa aaagtaaccc gcttcaaatc atatttacta
    19921 tccttattaa tccgtttcat tttcaaattg agttaaagca tctttaatgt cctgatcacc
    19981 actaataatt tgaaactctt ggtgattaaa atgattggat gtgacaattt cttttaatac
    20041 tgtcgcaaca tcttctctag gaatttcacc tttaccatca aaatattgtg cagcttctat
    20101 ctttccagat cctgctgcat ttgtaagtgc ccctggatgt aaaattgtat aattcaaacc
    20161 tgaacgtctt aaatagtcat cagcgtaatg tttagctatt gtatatggct ttaaatcacc
    20221 gctatcatca aaagcctgac gtctcgaatc atatgttgaa accatgacat agtgtttaat
    20281 attggcctct ttactcgcaa tcattgattt aacagcacca tctaaatcga caataattgt
    20341 tttatctgca cccgtgttcc ctccagaacc tactgaaaag ataactttat cgaatggttt
    20401 aaacgtctca gttaaagtct ctattgaatc attttcaaca tcaacaagaa ttgctttcat
    20461 accttgtgat tttaacgcat taagttgatc tgattgccta acaccagcag taaatggtac
    20521 attttctttt gctaattgtt gcactagtaa cgaacctaca ccgccattag cacctataac
    20581 caaaatattc atttacaaca ctctcctatt tattattctc tatgccatac cactttatga
    20641 gatatgtaaa acttgttaca actataaaaa tcaattgaca tactactggg aacgtattaa
    20701 attaatatat gaacaaatat tcacatgaaa ggattgtcat ataatgtcag aacaatattc
    20761 agaaataaat acagatacat tagaacgcgt aactgaaatt ttcaaggcat taggcgatta
    20821 caatcgaata cgtatcatgg aattgttatc agtcagcgaa gcaagtgttg gtcacatttc
    20881 acatcaattg aatttatctc aatcaaatgt ctcgcaccaa ttaaaattac ttaaaagtgt
    20941 gcatcttgtg aaagcaaaac gacaaggcca atcaatgatt tattcattag atgacatcca
    21001 cgtagcaact atgttaaagc aagccataca tcacgcgaat catcctaaag aaagtgggtt
    21061 ataatatgtc tcattcacat catcatcatg accatatgca tagtcatgta actacaaata
    21121 ataagaaagt attgtttata tcgtttttaa taatcggtct atatatgttt atcgaaatca
    21181 tcggcggtct ccttgctaac agcttggcat tactatctga cggtatccat atgtttagcg
    21241 acacattctc attaggtgtt gcacttgtcg catttattta tgctgaaaag aatgccacaa
    21301 ctacaaaaac atttggttat aaacgtttcg aagtactcgc agcgttattt aacggtgtaa
    21361 cgctttttgt aataagtatt ttgattgttt ttgaagcgat taaacgtttc tttgttcctt
    21421 ctgaagttca atcaaaagaa atgttaatca ttagtattat cggtttaatt gtcaatatcg
    21481 ttgttgcatt ctttatgttt aaaggcggcg acacttcaca caatttaaat atgcgtggtg
    21541 cttttctaca tgttatcgga gacttattag gttcagttgg cgccattact gcagctattt
    21601 taatttgggc atttggatgg acaatcgccg atcctatcgc aagtatttta gtttccgtta
    21661 ttattttaaa aagtgcttgg ggtatcacaa aatcttcaat taacatttta atggaaggca
    21721 caccaagtga tgttgatata gatgaagtta taactactat taaaaaggat tcacgaatac
    21781 aaagtgtgca tgattgccat gtttggacaa tttcaaatga tatgaatgca ttgagttgtc
    21841 atgttgttgt agaccataca ttgacaatga aagaatgtga attattatta gaaaacattg
    21901 agcatgattt attacattta aatattcacc atatgactat tcaattagaa acgcctaatc
    21961 acaaacatga tgaatcgatt atatgttcag gaacacatag tcattcacat aaccatcatg
    22021 ctcatcatca cgcgcatgta cattaataat tttaacctac tgccattgca tcgattaaac
    22081 ttttcaatgg cagtaggttt tttatgtctt tatggcgact tgtttggtct ttgatgatgc
    22141 aatgtttatt aacaaatttt caactattat ttcttacatt agtcatattt ttgacaattt
    22201 actattataa ttctctaact ttagtcactt taattaattt ttattagata ttaatatgaa
    22261 aataacgtgt tttttgttat tgtatttata tgaagaaaag gaggcaccac tttgtttact
    22321 tactttaaat cagcatttaa aaatgctaaa ccacaattat taataacatt gatatatgca
    22381 cttatagcat ttgctgtaat tgcagttgta tatttacttg ctaatttcca gcttgctaag
    22441 tatgcacaaa ctattgcaat ttattcacaa tttgggcaaa aaccaccagt agatgcatat
    22501 ttaaaagtta tcgctgtatt acttatagca gctgtagttt cactgtttgt tttagttcaa
    22561 atttttatcg gaattacaaa tgttatgaaa cgagcaatga gtcatgaaaa agtaaaattt
    22621 accgatttat ttattgcatt taaaaaaggt aattatttaa agagcgttct gatcggtctt
    22681 gtatctatag caatgattat cgttctttca cttctgacat cattactata caaattattt
    22741 tctccagtat cagaaatgat tatgaattca gtacaatcat catatgcaga tagtacacac
    22801 ctgattggta ttgctattac aactcaaagc atcataatca ttgttgtttt attgattaaa
    22861 gcaattatta cttggttatt gttaatacct attttcaact ttatgactag tttcgttgaa
    22921 tcaacta
//
LOCUS       DAMQWL010000032        22409 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.032, whole genome shotgun sequence.
ACCESSION   DAMQWL010000032 DAMQWL010000000
VERSION     DAMQWL010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 22409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22409
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.032"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            1..337
                     /locus_tag="PF788_001145"
                     /pseudo
     CDS             1..337
                     /locus_tag="PF788_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277741.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(445..1110)
                     /locus_tag="PF788_001146"
     CDS             complement(445..1110)
                     /locus_tag="PF788_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303415.1"
                     /translation="MALVVEDIVKNFGEGLSETKVLKGINFEVEQGEFVILNGASGSG
                     KTTLLTILGGLLSQTSGTVLYNDAPLFDKQHRPSDLRLEDIGFIFQSSHLVPYLKVIE
                     QLTLVGQEAGMTKQQSSTRAIQLLKNIGLEDRLNVYPHQLSGGEKQRVAIMRAFMNNP
                     KIILADEPTASLDADRATKVVEMIRQQIKEQQMIGIMITHDRRLFEYADRVIELEDGK
                     ITD"
     gene            complement(1110..2165)
                     /locus_tag="PF788_001147"
     CDS             complement(1110..2165)
                     /locus_tag="PF788_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303416.1"
                     /translation="MKLAIKEIMFYKFRYILITLIILLLSIMVLFISGLAQGLGRENI
                     SLFEHFDNDEYVVQKMKEPQIEKSQLSDTQQNQIKKVIHQEPYKMNIQTLKLSNKEQD
                     VITMNDVKQQRIQLKKGDYPKNAHEVAINDKLAADNIRVGDRLHFKNNSTSYRVSGIL
                     NDTMYAHSSIVLLNDNGFNALNKVNTAFYPVKNLTQQQRDELNKINDVQVVSEKDLTG
                     NIASYQAEQAPLNMMIVSLFAITAIVLSAFFYVMTIQKISQIGILKAIGIKTRHLLSA
                     LVLQILTLTIIGVGIAVIIIVGLSFMMPVTMPFYLTTQNILLMVGIFILVAILGASLS
                     FIKLFKVDPIEAIGGAE"
     gene            2301..2975
                     /gene="hssR"
                     /locus_tag="PF788_001148"
     CDS             2301..2975
                     /gene="hssR"
                     /locus_tag="PF788_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding heme response regulator HssR"
                     /protein_id="HDG6303417.1"
                     /translation="MVQCLVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQ
                     RVDIAVVDIMMDGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKP
                     FEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFM
                     LAARPKQIFTREQIIEKIWGYDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGY
                     KVENHV"
     gene            2968..4341
                     /gene="hssS"
                     /locus_tag="PF788_001149"
     CDS             2968..4341
                     /gene="hssS"
                     /locus_tag="PF788_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme sensor histidine kinase HssS"
                     /protein_id="HDG6303418.1"
                     /translation="MFKTLYARIAIYSITVILFSALISFVLTNVYYHYNLKASNDAKI
                     MKTLKEARQYEQSAKPTHIQQYFKHLGQMNYQIMTIDQKGHKTFYGEPFREDTLSQNA
                     INNVLNNQDYHGIKDKPFALFVTGFFDNVTDNTVGINFKTKDGSIAVFMRPDIGETFS
                     EFRTFLAVLLMLLLFISISLVIASTYSIIRPVKKLKLATERLIDGDFETPIKQTRKDE
                     IGTLQYHFNKMRESLGQVDQMRQHFVQNVSHEIKTPLTHIHHLLSELQQTSDKTLRQQ
                     YINDIYTITTQLSGLTTELLLLSELDNHQHLLFDDKIQVNQLIKDIIRHEQFAADEKS
                     LIILADLESINFLGNQRLLHQALSNLLINAIKYTDVGGAIDIALQHSHNNIIFTISND
                     GSPISPQAEARLFERFYKVSKHDNSNGLGLAITKSIIELHHGTIQFTQSNEYVTTFTI
                     TLPNNSL"
     gene            4504..4947
                     /locus_tag="PF788_001150"
     CDS             4504..4947
                     /locus_tag="PF788_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6303419.1"
                     /translation="MMKLNLFINANETESYIDIHAPKMNDNVQSIINAVNDLDKSHTL
                     VGYIDKEIHIINVSDVITFQVINKNVTAITSNQKFKLKLRLYELEKQLPQHFIRISKS
                     EIVNKYYIEKLLLEPNGLIRMYLKDAHYTYSSRRYLKSIKERLSI"
     gene            4944..5399
                     /locus_tag="PF788_001151"
     CDS             4944..5399
                     /locus_tag="PF788_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3021 domain-containing protein"
                     /protein_id="HDG6303420.1"
                     /translation="MKNLKNSLFISLIIGLSLSLFFSMLFADGKYYPLNPQSTIGILY
                     YTHFTETTVMLISIILWLLIGVVFFLGDFIFKYTDWSITKATIMHFITTYVGFLPLAM
                     LAGWFPLTVHYLIIFTIIFIVVYVLIWIIQFFKNKNYVDTINKQLKQLK"
     gene            complement(5465..6943)
                     /gene="mqo"
                     /locus_tag="PF788_001152"
     CDS             complement(5465..6943)
                     /gene="mqo"
                     /locus_tag="PF788_001152"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HDG6303421.1"
                     /translation="MTTQHSKTDVILIGGGIMSATLGTLLKELSPEKNIKVFEKLAQP
                     GEESSNVWNNAGTGHSALCELNYTKEGKDGTVDCSKAIKINEQYQISKQFWAYLVKTG
                     QLDNPDRFIQAVPHMSFVIGEDNVAFIKSRVATLKKSILFEKMKLSQDEEEMKSWVPL
                     MIEGRKSDEPIALTYDETGTDVNFGALTAKLFDNLEQRGVGIQYKQNVLDIKKQKSGV
                     WLVKVKDLETNETTTYESDFVFIGAGGASLPLLQKTGIKQSKHIGGFPVSGLFLRCTN
                     QEVIDRHHAKVYGKAAVGAPPMSVPHLDTRFVDGKRSLLFGPFAGFSPKFLKTGSHMD
                     LIKSVKPNNIVTMLSAGIKEMSLTKYLVSQLMLSNDERMDDLRVFFPNAKNEDWEVIT
                     AGQRVQVIKDTEDSKGNLQFGTEVITSDDGTLAALLGASPGASTAVDIMFDVLQRCYR
                     DEFKGWEPKIKEMVPSFGYRLTDHEDLYHKINEEVTKYLQVK"
     gene            complement(7324..8922)
                     /locus_tag="PF788_001153"
     CDS             complement(7324..8922)
                     /locus_tag="PF788_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDG6303422.1"
                     /translation="MLVNTFNPFDNLLLSSLIAAIPIVLFLLCLTVFKMKGIYAAITT
                     LVVTLLIAIPFFKLPVGIASGAVVEGFFQGIIPIGYIVMMAVLLYKITVESGQFLTIQ
                     DSITNISQDQRIQVLLIGFAFNAFLEGAAGFGVPIAICALLLTQLGFNPLKAAMLCLV
                     ANAASGAFGAIGIPVGVVETLKLPGDVSVLGVSQSATLTLAIINFIIPFLLIFIIDGF
                     RGVKETLPAILVVSITYTFTQGLLTVFSGPELADIIPPLLTMLALAVFSKKFQPKHIY
                     RVNKDEEIEPAKAHSAKAVLHAWSPFIVLTVIVMIWSAPFFKNLFLPNGALSSLVFKF
                     NLPGTISEVTHKPLVLTLNIIGQTGTAILLTIIITILMSKKVNFKDAGRLFGVTFKEL
                     WLPVLTICFILAISKITTYGGLSAAMGQGIAKAGNVFPVLSPILGWIGVFMTGSVVNN
                     NSLFAPIQASVAQQIGTSGSLLVSANTVGGVAAKLISPQSIAIATAAVKQVGKESELL
                     KMTLKYSVCLLIFICIWTFILSLL"
     gene            9239..10912
                     /locus_tag="PF788_001154"
     CDS             9239..10912
                     /locus_tag="PF788_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HDG6303423.1"
                     /translation="MIKQINVSNMQKFESQLMKAQSEGYTHVVPYANEIMIYQSMLDA
                     VQLYPKSIVVDYTVDGQYKNDCHYFGQSSINIADWAQNNNYYPNLIYAIQQTLDLIHY
                     YSVETIFDLALLTLLKGDLSIDGHVVFDFKAPIATSASIWETIKTIEDFDMMSQFYLN
                     KMAYIDHHPIPFRNLFIEDSEQLNSPDNWLYSTKFMLPKWLYKIAKQRADNKQLQNFG
                     LYTKQPNVLKDHIVFIGDHHQYIGNSKYLFTYFVKHNPMTACYFVTDDRRGPHFISPK
                     SEKADELINSARVVIVENDIPETLQPNGTLIQLHQGTPIMQLFLDSKEPIKNIETPFY
                     RAKRYNRWLQFDYVIHSADDISHFYQTAFPSHQANVLAYGNPKHQYLLQKSNESTTQQ
                     QYKKSFKINDQKPVLLYAPIGLVSAQQLPLSDALFKAYHVVVQGVDEAILPEEALVAP
                     KYLSAQDLILMSDVVITDYSNIIFDAMAIDKTVALYTPNHSQYIESQGVNEDIWRHLS
                     KIWYTDRQLLINNLISQAIPVIKYPQIQHKEQPLESISQLILSKMTSNQ"
     gene            complement(11065..11694)
                     /locus_tag="PF788_001155"
     CDS             complement(11065..11694)
                     /locus_tag="PF788_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303424.1"
                     /translation="MKRLVTGLLALSLFLAACGQDSDQQKDGNKEKDDKAKTEQQDKK
                     TNDSSKDKKDNKDDSKDVNKDNKDNSANDNQQQSNSNATNNDQNQTNNNQSSNNQANN
                     NQKSSYVAPYYGQNAAPVARQIYPFNGNKNQALQQLPNFQTALNAANNEANKFGSNNK
                     VYNDYSIEEHNGNYKYVFSFKDPNANGKYSIVTVDYTGQAMVTDPNYQQ"
     gene            complement(12008..12523)
                     /locus_tag="PF788_001156"
     CDS             complement(12008..12523)
                     /locus_tag="PF788_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6303425.1"
                     /translation="MAGIIKEISEQNASELVELATRTFYDTFGSYYDDKDFDQFFKDN
                     YTVEKFTQEINHVDSFHYFYQEDGANVGYIKMNINSAQTEEMGETYLEVQRIYFLKDF
                     QGGGRGSQLIELAEKIAQEHNKHKIWLGVWEHNPRAQAFYKRHGFKVVGEHHFQTGDV
                     TDTDLIMEKEL"
     gene            12714..13718
                     /locus_tag="PF788_001157"
     CDS             12714..13718
                     /locus_tag="PF788_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000573244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDG6303426.1"
                     /translation="MIETFKAFVIDKDESGKVTPTFKQLSPTDLPKGDVLIKVHYSGI
                     NYKDALATQDHNAVVKSYPMIPGIDLAGTIVESEAPGFEKGEQVIVTSYDLGVSHYGG
                     FSEYARVKSEWIIKLPDTLTLEESMIYGTAGYTAGLAIERLEKVGMNIEDGPVLVRGA
                     SGGVGTLAVLMLNELGYKVIASTGKQDVSDQLLELGAKEVIDRLPVEDDHKKPLASST
                     WQACVDPVGGEGINYVTKRLNHSGSIAVIGMTAGNTYTNSVFPHILRGVNILGIDSVF
                     TAMKLRQRVWRRLAKDLMPENLHEIKQVITFDELPEQLNKVIKHENKGRIVIDFGVDK
                     "
     gene            complement(13764..14165)
                     /locus_tag="PF788_001158"
     CDS             complement(13764..14165)
                     /locus_tag="PF788_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000241591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6303427.1"
                     /translation="MVKVTYDIPTCEDYCALRINAGMSPKTREAAEKGLPNALFTVTL
                     YDKDRLIGMGRVIGDGGTVFQIVDIAVLKSYQGQGYGSLIMEHIMQYIKGVAVESTYV
                     SLIADYPADKLYTKFGFIPTEPDSGGMYIKY"
     gene            complement(14201..15235)
                     /locus_tag="PF788_001159"
     CDS             complement(14201..15235)
                     /locus_tag="PF788_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDG6303428.1"
                     /translation="MKDVTIIGGGPSGLYASFYAGLRDMSVRLIDVQSELGGKMRIYP
                     EKIIWDIGGIAPKPCHEILKDTIKQGLYFKPEVHLNERVVDIRKKAERHFEVETEAGE
                     IYTSKAVIIAIGAGIINPKQLDVKGVERYQLTNLHYVVQSYRRFKDKDVLISGGGNTA
                     LDWAHDIAKIAKSVTVVYRKEDVSGHEAMKTLVTDLNVKLCPKTRIKYLVGNDDETHI
                     SEVVLEHVESGDRHTVKFDDVIISHGFDRCNTLLSETSSKLDMHDDCRVKGFGNTTTS
                     IPGIYACGDIVYHDAKSHLIASAFSDGANAANLAKTYIQPDANAEGYVSSHHEVFKEA
                     NKTIVNKHLY"
     gene            complement(15246..15362)
                     /locus_tag="PF788_001160"
     CDS             complement(15246..15362)
                     /locus_tag="PF788_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303429.1"
                     /translation="MANYAIYFNNININSIMALNDNNYQFEHVNERNEYRES"
     gene            complement(15467..15898)
                     /locus_tag="PF788_001161"
     CDS             complement(15467..15898)
                     /locus_tag="PF788_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2871 domain-containing protein"
                     /protein_id="HDG6303430.1"
                     /translation="MRRLLYSFLFYMIIGLFSGFFYRELTKAYDFTGTTQLSLVHTHT
                     LILGMFMFLILLPLEKLFKLSSYYLFNWFFYVYNIGVIVTIGMMVTKGFFQVTGKSYS
                     PEAFAGFAGIGHTGMLAGLLLLFFLLRQAILKEPRDESFKK"
     gene            complement(16105..17382)
                     /locus_tag="PF788_001162"
     CDS             complement(16105..17382)
                     /locus_tag="PF788_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HDG6303431.1"
                     /translation="MNIFKNKLLWIAPIATMIILVIFSLAFYPAYNPKPKDLPIGILN
                     EDKGTTIQDKNVNIGKKLEDKLLDSDSNKIKWVKVDSEKDLEKDLKDQKIFGVAIIDK
                     DFSKDAMSKTQKVVMDSKKEEMQQKVASGEIPPQVVQQMKQKMGNQQVEVKQAKFKTI
                     VSEGSSLQGSQIASAVLTGMGDNINAQITKQSLETLTSQNVKVNAADINGLTNPVKVD
                     NEKLNKVKDHQAGGNAPFLMFMPIWIGSIVTSILLFFAFRTSNNIVVQHRIIASIGQM
                     IFAVVAAFAGSFVYIYFMQGVQRFDFDHPNRIAIFVAFAILGFVGLILGVMVWLGMKS
                     VPIFFILMFFSMQLVTLPKQMLPESYQKYVYDWNPFTHYATSVRELLYLNHHIELNST
                     MWMFIGFMIFGAVSSLVSAIVRKHSTKRTEVPS"
     gene            17543..18166
                     /locus_tag="PF788_001163"
     CDS             17543..18166
                     /locus_tag="PF788_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDG6303432.1"
                     /translation="MKEDRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRG
                     TFYLHYEDKYMLLADMEDEYISELTTYTQFDLLRGSSIEDIANTFVNNILKNIFQHIH
                     DNLEFYHTILQLERTSQLELKINEHIKNNMQRYISINHSIGGVPEMYFYSYVSGATIS
                     IIKYWVMDKQPISVDELAKHVHNIIFNGPLRIMAENRLHKSNLDSLT"
     gene            18212..19156
                     /locus_tag="PF788_001164"
     CDS             18212..19156
                     /locus_tag="PF788_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HDG6303433.1"
                     /translation="MITSFRHSEDIDKHIIKTPLDHTASWINVVEPDREEIENLMEQY
                     NIPEDFIRDPLDSEESSRIEYDEDTGYSLIIIDLPIVNSTNRSVLSFVTIPLGIIIGN
                     GIIVTVCDAENEFLENLPKRDINLKFHSRFALEILTTIADHYNRNLRLLNKSRIRIEK
                     ELKNNITNKQLFKLMEVEKSLVYFLAALKGNDTIIKKLFRLPAIKRFEEDEELLEDLI
                     IENNQAIETTELHQRILESITTSYASLLSNDMNTIMKTLTLFTVLLTLPTLVFSFFGM
                     NVPLPIDDHSYISWIIVVGISLILVVIVSIFLWRKQKL"
     gene            complement(19242..20684)
                     /locus_tag="PF788_001165"
     CDS             complement(19242..20684)
                     /locus_tag="PF788_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
                     /protein_id="HDG6303434.1"
                     /translation="MNYKQSAEEILNAIGGEENLDAMAHCATRLRLVLNDESLVNEEA
                     LNNMDVVKGTFSTGGQYQIIIGSGTVNKVFSELEKLTGKEASTTSEVKAQSAKNMNPL
                     QRFVKMLSDIFVPIIPAIVAGGLLMGLNNILTAKDLFFSGKSLIDVYSQFAGLAEMIN
                     VFANAPFTLLPILIGFSAAKRFGGNPFLGAALGMILVHPSLMSAYDFPKAVEAGKAIP
                     YWDVFGLHINQVGYQGQVLPMLVAAYILASIEKGLRKVIPTVLDNLLTPLLSIFITAF
                     LTFSFVGPITRQLGYWLSDGLTWLYEFGGAIGGLIFGLLYAPIVITGMHHSFIAVETT
                     LIADATKTGGSFIFPIATMSNVAQGGAAIAAFFIIKQNKKLKGVASAAGISALLGITE
                     PAMFGVNLKLRYPFIGAIVGSGIGSAYIAFFKVKAIALGTAGLPGFISINPVHAGWLH
                     YFVGMTISFIIAITVTLILSKRKANKEVVE"
     gene            20867..21250
                     /locus_tag="PF788_001166"
     CDS             20867..21250
                     /locus_tag="PF788_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501125.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgA family protein"
                     /protein_id="HDG6303435.1"
                     /translation="MKERGYIEQLWREEKYHVLLHSQQSYQMIRNALKTDLSLHQVQQ
                     MIDVALLIEPSIGSVCNAFDHMWGYLKKCANEEERQQSKLLKADFINGKIDTQTLLDF
                     LAELANKYDVQYLLQSRVLNTKRKR"
BASE COUNT         7556 a         3920 c         3233 g         7700 t
ORIGIN      
        1 gttatgatag tgagcaaaac tatatggcta ttatagatga ttttaataaa acgccactta
       61 ttacgtatgt catgtttatt aaagataaaa ctagaaagtt taaaagtgac atttttaaca
      121 ctcaaaattg gaaatatgac gaacttaatg atgaatttat atgtcctaat aacaaaagaa
      181 taggttttaa aagatatgca taccataatg atagatatgg ttttaaacgt gacttcaagc
      241 tatatgaatg caacgagctg tacattataa aatacatatc aaaaaagctg atttctatca
      301 aataattaat agaaatcagc ttttttacat tgcctaagaa cttaatgtcc cagcctgttt
      361 tttgtaaacc caaatcgtat tctgttatct aacttttata ctactatgtc ttaaatcatt
      421 aacatttagc gtctttacaa gccactaatc agttattttg ccatcttcta attcaatcac
      481 tcgatctgca tattcaaata atcttcgatc gtgtgtaatc ataataccaa tcatttgttg
      541 ttctttaatt tgttgacgta tcatctcaac aacttttgtt gctctatcgg catctaaact
      601 tgctgtgggc tcatctgcta aaatgatttt cggattattc ataaatgctc tcataatcgc
      661 aacacgttgc ttttcaccgc cagataactg atgcggatat acattcaagc gatcttctaa
      721 accaatattt ttcaaaagtt gtattgctct tgttgaactt tgttgtttgg tcattcccgc
      781 ttcttgacct acgagtgtca attgctctat cacttttaaa taaggaacta aatgtgaaga
      841 ttgaaaaata aaaccaatat cttccaatcg taaatcacta ggacgatgct gtttatcaaa
      901 caatggcgca tcattgtaaa gcactgtacc actcgtttga cttaacaatc cgcctaatat
      961 cgttagcaat gttgttttcc cagaaccaga ggcaccattt aaaatgacaa attccccttg
     1021 ttccacttca aaattaatac cttttaaaac ttttgtttca gacaaacctt ctccgaaatt
     1081 tttgacgata tcttcaacga ctaatgccat tattctgcac ctccaattgc ttcgatagga
     1141 tccactttaa ataatttgat aaatgatagt gaggcaccta aaatcgctac taatataaat
     1201 atccccacca ttaataaaat attttgcgtt gttaagtaaa aaggcatcgt taccggcatc
     1261 ataaatgata gtcctactat gatgatcaca gcaataccta ccccaattat tgttagtgtt
     1321 aaaatttgta aaactaacgc actcaataaa tgtcttgtct taataccaat tgctttcaaa
     1381 atgccaattt gtgatatttt ttgaatcgtc ataacataga aaaatgcact tagaacgatt
     1441 gctgtaatag caaacaaact aacaatcatc atatttaacg gtgcttgctc tgcttgataa
     1501 ctcgcaatat tacctgttaa atctttttca ctcacaactt gaacgtcatt tattttatta
     1561 agctcatcac gttgttgttg tgttaaattt ttcactggat aaaatgccgt attaacctta
     1621 ttcaatgcat taaatccgtt atcgttcaat agcacaatgg aactatgcgc atacattgtg
     1681 tcgtttaaaa taccagaaac tctataacta gttgaattat ttttaaaatg taatctatcc
     1741 ccgactctaa tgttgtctgc agctaactta tcattaatag cgacctcatg agcattttta
     1801 ggataatcac cttttttaag ttgtatgcgt tgttgtttaa cgtcattcat tgtaatcaca
     1861 tcttgttctt tattagataa tttcaatgtt tgaatattca ttttatatgg ttcttgatga
     1921 attacctttt taatttgatt ctgttgcgta tcactaagtt gcgatttctc aatttgcggc
     1981 tctttcattt tttgaacaac atattcatca ttatcaaagt gttcaaataa cgaaatattc
     2041 tccctaccaa gcccttgagc taaaccacta ataaataaca ccataatact taataaaaga
     2101 atgattaatg tgattaaaat ataacgaaat ttgtaaaaca taatctcttt tatcgctaat
     2161 ttcatatcga ttcacttctc cctatttctt ctttagcgtc agtataaggt tgaaatatga
     2221 actcaatatg aacaattgtt tttttacgca aaaatatttt acatgtataa taaatgaaaa
     2281 agataaggga gtttatagct atggtgcaat gtcttgttgt cgatgacgat cctcgaatcc
     2341 taaattatat agctagccat ttacaaacag agcacattga tgcatacaca caaccaagtg
     2401 gtgaagctgc attaaaactt ttagaaaaac agcgtgtcga tattgcagtg gtagatatta
     2461 tgatggatgg tatggacggc tttcaattat gtaatacatt aaaaaatgat tatgatatac
     2521 cagttattat gttaacagcg cgggatgcac ttagtgacaa agagcgtgcg tttataagcg
     2581 gtactgacga ttatgtaacc aaaccctttg aggttaagga acttattttt agaattcgtg
     2641 ctgtattacg tcgatataat atcaattcaa attcagaaat gactattggc aacttaacgc
     2701 taaaccaatc ctatttggaa ctccaagtat ctaataaaac gatgacgtta ccgaacaagg
     2761 aatttcaatt attatttatg cttgcagcac gtcctaagca aatctttact cgtgaacaaa
     2821 taatagaaaa aatttggggc tatgattatg aaggagatga gcgaacagtt gacgttcata
     2881 ttaagcgact acgccaaaga ttaaaaaaat taaatgccac acttacaatt gaaacagtaa
     2941 gaggacaagg ctataaggtg gagaatcatg tttaaaacac tctatgctag aattgcgatt
     3001 tattccatta cggttatttt atttagtgca ttaataagtt ttgtattaac aaatgtttac
     3061 tatcattata atttaaaagc atctaatgac gcgaaaatca tgaagacgct taaagaagca
     3121 agacaatatg aacaatcagc taaaccaacg cacattcaac aatatttcaa acatttaggg
     3181 caaatgaatt accaaataat gaccattgat caaaaaggtc ataagacatt ttatggggag
     3241 ccatttagag aagatacttt atcacaaaat gctattaaca acgtattaaa taatcaagat
     3301 taccatggta ttaaagataa accattcgca ttattcgtaa ctggattttt cgacaatgta
     3361 acagataata ctgttggtat taactttaag acaaaagacg gttcaatagc agtatttatg
     3421 cgtccagata ttggagaaac atttagcgag tttagaacat tcttagccgt cttgttaatg
     3481 ttgttattat ttatctcgat ttcattagtt atcgcatcaa cctattcaat cattcgtcca
     3541 gtaaaaaagt taaagctagc gaccgaacgc ttaattgatg gtgattttga aacacctatc
     3601 aaacaaacac gcaaagatga aattggaaca ttacagtatc actttaataa gatgagagag
     3661 tcattgggac aagttgatca aatgaggcag cattttgtac aaaatgtatc tcatgaaatc
     3721 aaaacaccat taacacatat tcatcattta ttaagcgagt tacaacaaac ttctgataaa
     3781 acattaagac aacaatatat aaatgatatc tataccatta caacgcagct gagcggatta
     3841 acaactgaat tgttgctctt atccgaatta gataatcacc aacatttatt attcgatgat
     3901 aagattcaag tcaatcaact cattaaagat atcattcgac atgaacaatt tgctgctgat
     3961 gaaaagtcgt taatcatttt agctgaccta gaatcaatca atttcctagg aaatcaacgt
     4021 ttgttacatc aagcattgag taatttatta ataaatgcta ttaagtatac agatgttggt
     4081 ggtgccattg acatcgcttt gcaacatagt cacaacaata tcattttcac aataagtaat
     4141 gatggttcac caattagtcc acaagctgaa gcacgtttat ttgaacgttt ttataaagtg
     4201 agcaaacatg ataatagcaa tggtttaggt cttgcaatta caaaatccat cattgaattg
     4261 catcatggta caatccaatt cacacaaagt aacgagtatg taaccacctt tactattaca
     4321 ctgccaaata attcacttta atctctacct cctgaaaaaa catttctgtt tttatttcag
     4381 gaggtatctt ttatattgat tagcgctttc tagccactta acatttaatt tctaccattc
     4441 aacaaaattt aaatatatcg atggtcattt atggtttaat aattttgaag gaggcattaa
     4501 cctatgatga aactcaattt atttatcaat gcaaatgaga cggaatctta tattgatata
     4561 catgcaccta aaatgaatga taacgttcaa agtattatta atgcagtcaa tgatttagac
     4621 aaatcacata cattagtcgg atacatagac aaagaaatcc atatcattaa tgtatcagat
     4681 gttataacat tccaagttat taataaaaat gtaacagcca ttacaagcaa tcaaaaattc
     4741 aaactaaaat tacgacttta tgaactagaa aaacagttac cacaacattt cattcgcatt
     4801 tccaaatcag aaatcgtcaa caagtattac attgaaaaat tattattaga gccaaatgga
     4861 cttatacgta tgtatcttaa agatgcacac tacacctatt cttctagacg ttatttaaaa
     4921 tctataaagg agcgcttatc aatatgaaaa atttgaaaaa ctcattattt attagcttaa
     4981 tcattggttt gtccctttca ctgttcttta gtatgttatt tgcagacggc aaatattatc
     5041 cactgaaccc acaatcaact attggcatat tgtattatac gcatttcaca gaaactaccg
     5101 taatgttgat ttctatcatt ttatggttac tcataggcgt cgtctttttc cttggagatt
     5161 ttatctttaa atacacagat tggagcatta ctaaagcaac tataatgcat ttcataacaa
     5221 cgtatgtcgg attcttgcct ttagcaatgc ttgccggttg gtttccacta acagtgcatt
     5281 atctaatcat attcacaatt atcttcattg tggtttatgt attaatttgg ataattcaat
     5341 tctttaaaaa caagaactac gtagacacta ttaacaagca actgaaacaa ttaaaatgat
     5401 ttttattaac cactaaaaaa cggtaatgtc tatcacatta aaaaagacat taccgtttcg
     5461 tttattattt aacttgtaaa tacttagtta cttcttcatt aattttatga tataaatcct
     5521 catgatctgt taagcgataa ccaaatgacg gcaccatttc tttaatcttt ggttcccatc
     5581 ctttgaattc atcacgatag catctctgta aaacatcaaa cataatatct acagctgttg
     5641 acgcaccagg tgatgcacca agtaatgcag ctaatgtgcc atcatctgac gtaataactt
     5701 cagtaccaaa ttgtaagtta cctttagaat cctcagtatc cttgattact tggacacgtt
     5761 gccctgctgt aatcacttcc caatcttcat ttttagcatt tgggaaaaag actcttaaat
     5821 catccatacg ctcatcatta gataacatca attgtgacac taaatacttc gtaagactca
     5881 tttctttgat acctgcagat aacatcgtca cgatattatt tggtttaacc gatttaatta
     5941 aatccatatg tgaacctgtt tttaaaaatt taggtgagaa acctgcaaat ggaccaaata
     6001 acaatgaacg cttgccgtct acaaaacgtg tatctaagtg cggcactgac attggtggcg
     6061 cacccactgc tgcttttccg tacactttag catgatgacg atcaatcact tcttgatttg
     6121 tacagcgcag gaataatcca cttaccggga aaccaccaat atgttttgat tgtttaatcc
     6181 cagtcttttg gagtaatggt aaactcgcac cgccagcacc aataaataca aaatcagatt
     6241 catatgttgt cgtttcatta gtttctaaat ctttaacttt aactagccat accccagatt
     6301 tctgtttctt gatgtctaat acattctgct tatattgaat tcccacacca cgttgctcta
     6361 aattatcaaa taactttgca gttaacgcac caaagttaac atctgtacca gtttcatcat
     6421 aagttaaagc aattggttca tcagacttac gaccttcaat cattaacggt acccaagatt
     6481 tcatttcttc ttcatcttgc gataatttca ttttttcgaa taaaatactt ttctttaacg
     6541 ttgcaacacg actttttata aaagctacat tatcttcgcc aatgacaaaa ctcatgtgtg
     6601 gcaccgcttg aataaagcga tctgggttat ctaattgtcc tgttttaact aaatatgccc
     6661 aaaactgttt tgaaatttgg tactgctcat ttatcttaat tgctttacta caatcaactg
     6721 tgccatcctt accttctttt gtatagttca actcgcaaag tgctgaatgc cctgtaccgg
     6781 cattattcca tacatttgaa ctctcttcgc caggttgtgc taatttttca aacactttaa
     6841 tatttttctc aggtgataat tctttaagta atgttcctaa tgttgcactc ataataccgc
     6901 caccaattaa gatgacatct gttttgctat gttgtgttgt cataacaaat acagtccccc
     6961 tttttaaaat gaataatgga acgttcgaga aatacgacat attaatacca ctttaaatca
     7021 ataagtgtct caataggttc ccatggtgat gctctattac tatctactat gtatattaat
     7081 attttataat aacgaaacta ctttaattat atactttatg tgcgatagca caaagacaaa
     7141 accacaaacc ttaacagcta tcaaccaatt taatttgatt gctgattact cactattcat
     7201 tttaacataa agcgctacca ttattataat gtcaaacttc tttcattaat gatccataaa
     7261 aaaaagatga gatgttagaa aacatctcac cttctgtata tttatatttt gaaatacgtt
     7321 tttttataat aatgacaaga tgaaagtcca aatacagatg aatattagta aacatacact
     7381 gtatttcaat gtcattttta ataattctga ttccttacca acttgtttta ctgctgcagt
     7441 tgcaattgca attgattgtg gtgaaatcaa ttttgccgct acaccaccaa ctgtattagc
     7501 agatacaaga agtgaaccac ttgttccaat ttgttgtgca acagaagctt gaattggtgc
     7561 aaataatgag ttgttattta caactgatcc tgtcataaac acacctatcc aacctaaaat
     7621 tggtgataga actgggaaga cattacctgc tttagcaata ccttgaccca ttgctgcact
     7681 taaaccacca taagttgtga ttttagaaat tgctaagatg aaacaaattg taagaactgg
     7741 taaccacaac tctttaaatg taacgccgaa taatctacct gcatctttaa agttaacctt
     7801 tttagacatt aaaattgtaa taataatagt taataaaata gctgtacctg tttgtccaat
     7861 aatatttaaa gtcaatacta atggtttatg cgtaacttcg ctgattgttc caggtaagtt
     7921 gaatttaaat actaatgatg ataaagcacc atttggtaag aataagtttt taaagaatgg
     7981 cgcactccaa atcattacaa tgactgttaa tacaatgaat gggctccatg catgtaatac
     8041 tgcttttgca gaatgtgctt ttgcaggttc aatttcttca tctttattaa cacgataaat
     8101 gtgttttggt tggaattttt tagaaaatac tgctaatgct aacattgtta ataacggtgg
     8161 aataatatct gctaattcag gtccactgaa tacagttaat aatccttgag taaatgtata
     8221 agtgattgaa actactaaaa ttgctggtaa tgtttcttta acacctctaa aaccatcaat
     8281 aataaagata agtaagaatg gaataatgaa atttatgatt gccaatgtta aagttgctga
     8341 ttgagaaaca cctaatactg aaacatctcc aggtaatttc aacgtttcta caacacctac
     8401 agggatacca atcgcaccaa aagcaccaga cgctgcattt gcgactaaac ataacatcgc
     8461 agcttttaat ggattaaatc ctaattgtgt taataaaagt gcacaaattg caattggtac
     8521 accaaatcct gctgcacctt ctaaaaatgc gttgaatgca aatccaataa gtaaaacttg
     8581 aatacgttgg tcttgtgaaa tatttgtaat actatcttga attgttaaaa attgtccaga
     8641 ttcaacagta attttgtata acaatactgc catcataacg atatagccaa tcggaatgat
     8701 accttggaag aaaccttcga ctactgcacc agaagcgata ccaactggca atttgaaaaa
     8761 tggtattgca attagtaatg ttacaacaag tgttgtaata gctgcataaa tacctttcat
     8821 tttaaaaaca gttaaacata gtaaaaacag tacaatcggt attgctgcaa ttaaagacga
     8881 taataataaa ttatcaaatg ggttaaacgt atttactaac ataggctgac tcttctttcc
     8941 ataaagtagt agtgtaattg cttcattaaa atcatgctct ggctatagca ttttgttatc
     9001 gataacattt tacagaacag tgagattaat gtgatttttt tcacaattaa aatataccat
     9061 tttttcagac tattaacaat atcactttcc tatttaattg ttttattttt cattttaaat
     9121 ctgttcatca aaatgaattg tacttaatgt aatgaagtaa cttatactat tcatgaattt
     9181 tacataagac cgtgctaaaa taaggaagat actacgatga ggaatggaag ttatagcaat
     9241 gattaaacag ataaatgttt ctaatatgca aaagtttgaa tctcaattaa tgaaagctca
     9301 gtctgaaggt tatacacatg tcgttccata tgccaatgag ataatgattt atcaatcgat
     9361 gttagatgcg gttcaattat atcctaagtc tatcgtggtt gattatactg tggatggaca
     9421 atacaaaaat gattgtcact atttcggtca atcatcgatc aacattgccg attgggctca
     9481 aaacaataat tattatccta acctgatata tgcgattcaa cagactcttg atttaataca
     9541 ttattactct gtagaaacga ttttcgattt agctttattg acacttctga aaggtgattt
     9601 atcaatcgat ggtcatgtcg tttttgattt taaagcccct atagcaacaa gtgcttcaat
     9661 atgggaaact attaaaacta ttgaagattt tgatatgatg tctcagtttt atttgaataa
     9721 aatggcttat attgatcatc atcctatacc ttttcgcaac ctttttatcg aggattcaga
     9781 acaacttaat tcgccagata attggttgta ttctaccaag tttatgctac ctaaatggtt
     9841 atataaaata gcaaagcaac gtgctgataa caaacaatta caaaacttcg gcctgtatac
     9901 gaagcaacca aacgttttaa aagatcacat cgtttttatc ggtgatcatc atcaatatat
     9961 aggtaattca aaatatttat ttacttactt cgttaaacat aatccaatga ctgcctgtta
    10021 ttttgttact gacgatcgtc gcggaccaca tttcatatca cctaagtctg aaaaagctga
    10081 cgaattgatt aacagcgcac gcgtagttat agttgaaaat gatatacctg aaacgttaca
    10141 accaaacggt actttaattc aattacatca aggcacacca ataatgcaat tatttttaga
    10201 tagtaaagag cctattaaaa atatagaaac acctttttat cgtgctaaaa ggtataatcg
    10261 ctggttgcaa ttcgattatg ttatacattc tgctgatgat attagccact tttatcaaac
    10321 ggcttttcct agtcaccaag caaatgtatt ggcttatggt aatcctaaac accaatattt
    10381 actacaaaag agtaacgaaa gtactactca acaacagtat aagaaatcgt ttaaaataaa
    10441 tgatcaaaaa ccagttttat tatacgcacc tattggatta gtgagtgcgc aacaattacc
    10501 actatcagat gctttattca aagcctatca tgttgtggtt cagggtgttg atgaagcgat
    10561 cttaccagaa gaggcgcttg ttgcaccaaa gtatcttagt gctcaagact taattctaat
    10621 gtctgatgtc gttatcactg attactcaaa tataatattt gatgcgatgg ctatagacaa
    10681 aacagtagca ttatacactc caaatcacag tcaatacatt gagtctcaag gtgttaacga
    10741 agatatttgg cgtcatctat caaaaatttg gtatacagac cgacaattat taattaataa
    10801 tttaatttcc caggcaatac cagtgattaa atatccacaa atacaacata aagaacaacc
    10861 attagaatct atttcacaac ttatattgtc taagatgaca tctaatcaat agtgtttaaa
    10921 tttctcagtg gctgtgaatg aggtttaaaa gtactataaa acgtaaactt tgatacttta
    10981 aaatacgcaa aaaacggtaa accctaattc atattataga gtttaccgtt ttatttttta
    11041 acttgcatca tagttatatt aacattattg ttggtagttt ggatcagtaa ccattgcttg
    11101 tccagtataa tcaaccgtta caattgaata ttttccattt gcatttgggt ctttaaaact
    11161 aaacacatac ttatagttgc cattatgttc ttcaatagaa taatcattat acactttatt
    11221 attactacca aatttatttg cttcattatt agccgcattt aaagctgttt ggaaatttgg
    11281 caattgctgt aaagcttgat ttttatttcc attaaacgga taaatttgac gtgcaaccgg
    11341 cgcggcattt tgtccataat atggtgcaac gtaacttgat ttttgattat tattcgcttg
    11401 gttattactt gattggttat tatttgtttg gttttggtca ttgtttgttg catttgaatt
    11461 agattgttgc tggttatcgt ttgcactatt atctttatta tctttgttta cgtctttact
    11521 atcatcttta ttatctttct tatctttaga tgaatcattt gtttttttat cttgttgttc
    11581 agttttcgct ttatcatctt tttctttatt accgtctttt tgttggtcac tatcttgacc
    11641 acatgcagct aaaaataatg ataatgctag taaccctgta actaatcttt tcatacatat
    11701 ctcctcctat aattcgatat tcattgaata atcttgaaat acatatctac catgtgtatc
    11761 ttttcatggc ttgttaccaa agacgtcaac attaatatga tctgaattat cacaatatcc
    11821 ataactacaa tctaaggttc tttttattat accctaattt ttgttcatta ttatttaatt
    11881 tttgtgaatt ttatgttttc tataaattta attattttac tttaacaatt cattacgcat
    11941 ttagcatttc aaggtataca caatatttat tactatgatt tcattttatc tgctgcaaaa
    12001 acaatcatta taactctttt tccataatta aatctgtatc cgttacatca cctgtttgaa
    12061 aatgatgttc accaaccact ttaaatccat gacgtttata aaatgcttga gcacgaggat
    12121 tatgctccca aactcctagc caaattttat gtttattatg ttcttgagca attttttcgg
    12181 ccaattctat caattgtgaa cctcttccgc caccttgaaa gtctttcaaa aaatatatgc
    12241 gctgcacttc taaataggtc tcccccattt cttcagtttg agcactatta atattcatct
    12301 ttatataacc aacattcgca ccatcttctt gataaaaata atgaaatgaa tctacatggt
    12361 taatctcttg tgtaaatttc tctacagtat aattgtcttt aaaaaattga tcaaaatctt
    12421 tgtcatcata gtaagaacca aacgtgtcat aaaatgttct agttgctaat tcaactaatt
    12481 cactagcatt ttgttctgaa atttctttga ttatcccagc catataaatc ctccaataaa
    12541 cagtgatcga atcaaaatat tacttatgtt atttttcagc caaaactatt taaaaataca
    12601 ttaacacaaa tcaattacaa attgtattga ttgtgtgtaa catcaataaa tgatacattt
    12661 attccagtaa aatggccgta ttttcaaaag agaaaaagag aggatgtatc gttgtgatag
    12721 aaacatttaa agcgtttgta attgataaag atgagagtgg taaagtgaca ccaactttca
    12781 aacaattatc gcctactgat ttacctaaag gagatgtgct gattaaagta cattactctg
    12841 gtataaatta taaagatgct ttagcgactc aagatcataa tgcagtcgta aaatcgtatc
    12901 ctatgattcc aggaatagat ttagctggaa caattgttga atccgaagca ccaggctttg
    12961 aaaaaggaga acaagtaatt gtaacgagtt atgacctagg tgtcagccat tatggcggtt
    13021 ttagtgaata tgcgcgtgta aaatcagaat ggattatcaa gcttcctgat actttaacat
    13081 tagaagaatc aatgatatat ggcacagctg gttatactgc cggtttagca attgaaagac
    13141 ttgaaaaagt tggaatgaat attgaagatg gtcctgtact cgttcgcggt gcttcaggtg
    13201 gtgtcggtac tttagcagta ctcatgctta atgaacttgg ttataaagtt atcgcaagta
    13261 caggtaaaca agatgttagc gatcaattac ttgaacttgg tgccaaagaa gttatcgatc
    13321 gacttcctgt tgaagatgat cataaaaagc cactcgcatc atcaacttgg caagcttgtg
    13381 tagaccctgt tggtggcgaa ggtattaatt atgttacaaa gcgtttaaat catagtgggt
    13441 caattgcagt tattggtatg actgccggta atacttatac taattctgta ttccctcaca
    13501 ttttaagagg tgtaaacatt ttaggaattg actcggtatt tactgctatg aaattaagac
    13561 agcgcgtttg gcgtcgtctc gcaaaagatt taatgcctga aaatttacat gagatcaagc
    13621 aagttattac atttgatgaa cttccagaac aacttaacaa agtaattaaa catgaaaata
    13681 aagggcgcat tgttatcgat ttcggtgtag ataaatagta ttcatgaaaa agacatcccg
    13741 ttatgcgaga tgtctttttt aatttagtat ttgatataca taccgcctga atctggttcg
    13801 gtaggtataa atccaaattt tgtatataat ttatccgctg ggtagtctgc aatcagacta
    13861 acgtatgtac tctcaacagc cacaccttta atatattgca taatatgctc cataattaga
    13921 ctgccgtaac cttgaccttg gtaacttttc aaaactgcaa tatcaacaat ttgaaaaaca
    13981 gttccgccat cgccaatcac tctacccata ccaattaacc gatctttatc atacaaggtt
    14041 actgtaaata aggcattagg taatcctttt tcagctgctt cgcgcgtctt tggactcata
    14101 cctgcgttaa tccttaatgc gcaataatcc tcgcaagtcg gaatatcata tgtcacttta
    14161 accattattt accccacttt tcatcacaca atatatcaac ctagtataaa tgtttattta
    14221 caatagtctt attcgcttct ttaaacactt catgatgact tgaaacataa ccctctgcat
    14281 tcgcatctgg ttggatatat gttttagcaa ggttcgctgc atttgcacca tcactaaatg
    14341 cacttgcaat tagatgtgat tttgcatcat gataaacaat atctccacac gcatagatac
    14401 caggtatact agttgtcgta ttaccaaatc ctttaacacg acaatcatca tgcatatcta
    14461 gctttgaaga tgtttcactc aataatgtat tacaacgatc aaacccatga ctaataatga
    14521 catcgtcaaa tttaactgta tgcctatcgc cactttcaac atgttccaaa acaacttcac
    14581 ttatatgcgt ttcatcatca ttgccgacca agtatttaat acgtgttttt gggcatagtt
    14641 tcacatttaa atctgtcacc aacgttttca tcgcttcatg accacttaca tcttcttttc
    14701 gataaacaac tgtcacgctt ttagcaatct tggcaatatc atgcgcccaa tctaatgctg
    14761 tatttcctcc acctgatatt aatacatctt tatctttgaa acgtctgtaa ctttgtacaa
    14821 cataatgtaa attagttaat tgatatctct ctacaccttt aacatctaat tgttttggat
    14881 taataatacc cgcaccaatt gcaatgataa ctgctttcga tgtatatatt tctcccgctt
    14941 ctgtttcaac ttcgaaatga cgttctgcct ttttcctaat atctaccaca cgttcattca
    15001 aatgaacttc cggtttaaaa tataatcctt gcttaattgt atcttttaaa atttcatgac
    15061 aaggttttgg cgcaatgccg ccaatatccc aaataatttt ttcagggtaa attctcatct
    15121 taccccctaa ttcagattga acatctatca atcttacaga catatctcgc aatccagcat
    15181 aaaagcttgc atacaaacca gacggaccgc caccaatgat tgtaacatct ttcattatgt
    15241 gcctcctatg actctctata ttcatttctt tcattaacgt gctcaaattg ataattatta
    15301 tcatttaaag ccattatact attaatattt atattgttaa aataaatcgc atagttagcc
    15361 atgaattatc aataactatc ccatcacaat ataaaaacac acctttcaaa gtaagaaaca
    15421 acaatgttcc tttgaaagat gtgtatattt tttagttcta gttatattat tttttaaaag
    15481 actcatcacg tggttcttta agaattgctt gtcttaaaag gaaaaatagc aacaataaac
    15541 ctgcaagcat acctgtgtgc ccaatacctg caaagcctgc aaatgcttct ggagagtatg
    15601 atttaccagt gacttggaag aatccttttg tcaccatcat acctatagta acgataacac
    15661 ctatgttata tacatagaag aaccagttaa ataagtagta acttgataat ttaaataact
    15721 tctccaatgg taataatatt aaaaacataa acatacctaa aataagtgta tgtgtgtgta
    15781 caagtgataa ttgtgttgta ccagtaaaat catatgcttt tgttagctct ctatagaaaa
    15841 agccactaaa taaacctatg atcatataaa aaagaaatga atataataac ctacgcattt
    15901 tgaatcctcc ctcacctttt cattatatcc gattatacct attataacag tgacaaaaaa
    15961 gcgaagatat gacacaactg aatttggttt agcacatagt atgacagcta aaataacttt
    16021 acatcaagcg ctatacaaat aaaatagcta taccatgacg ctcgctacaa acgtcttgta
    16081 tagctattat ttctatttat taaattatga cggcacttca gtacgttttg tgctatgttt
    16141 tctaacaata gctgaaacta aacttgatac agcgccaaaa atcataaacc ctataaacat
    16201 ccacattgta ctatttaatt caatatgatg attcaagtat aatagttctc ttacacttgt
    16261 tgcatagtgt gtgaatggat tccaatcata tacatatttt tgataacttt caggcaacat
    16321 ttgtttaggt aacgttacaa gttgcatact aaagaacatt aaaatgaaga aaattggaac
    16381 tgacttcata cctagccata ccataacacc taaaataagg cccacgaaac caagaatcgc
    16441 aaatgctaca aaaattgcga tacgatttgg atggtcaaaa tcaaatcttt gaacgccttg
    16501 catgaaataa atataaacaa agctacctgc aaatgctgca acaactgcaa atatcatctg
    16561 tccaattgaa gcaatgatac gatgttgcac gacgatattg ttactagttc taaatgcaaa
    16621 gaacaataag atagacgtta cgattgaacc tatccaaatt ggcataaaca ttaggaatgg
    16681 tgcattacca cctgcttggt gatctttaac tttattaagt ttttcattat ccacttttac
    16741 tggattcgtc aaaccattga tgtccgcggc attgacttta acattttgac tcgttaatgt
    16801 ttccaaactt tgcttcgtaa tttgagcatt aatattatca cccataccag ttaacacagc
    16861 tgatgcaatt tgtgaacctt gtaagcttga tccttcactt acaatcgttt taaatttagc
    16921 ctgcttaacc tctacttgtt gattccccat tttttgtttc atttgttgaa ccacttgtgg
    16981 cggaatttca cctgaagcaa ctttttgttg catttcttct tttttactat ccataactac
    17041 tttttgtgtt ttactcatag catcttttga aaagtcttta tcaataatag ctactccaaa
    17101 gattttttga tctttcaaat ctttttcaag gtctttttca ctatcaacct taacccattt
    17161 aattttatta gaatcactat ctaataattt atcctctaat tttttaccaa tgttaacatt
    17221 tttatcttga atcgttgtac ctttatcctc gtttaatata ccaattggta aatcttttgg
    17281 tttaggatta tatgcaggat aaaaagctaa agaaaagatt accaagataa tcatagttgc
    17341 tattggtgca atccataata atttattttt aaatatattc attttattaa ttacctcctt
    17401 attagacaat gtgttgaata tttcgcatgt tgtctattat aatatgtaag tgggaataaa
    17461 caatacacaa tgttcatcaa tacgttcatt aatagacaaa tacacccaca ttgttcaata
    17521 acacaaggag gttgatttat ttttgaaaga agataggcga attagaaaga caaagtcctc
    17581 cattaaacaa gcgttcacta aattactaca agaaaaagat ttagaaaaga ttaccattcg
    17641 cgacataaca acacgcgctg atatcaatag agggacattt tacttacatt acgaggataa
    17701 atatatgtta ctcgcagata tggaagatga gtatatttca gaactaacga catatactca
    17761 atttgatttg ttacgcggtt cttcaattga agacattgcg aatacttttg taaataatat
    17821 actcaaaaat attttccaac atattcatga taatttagag ttttatcata ctattttaca
    17881 attggaacgc acgagtcaat tagaattgaa aatcaacgaa catattaaaa ataatatgca
    17941 acgttacatt agtatcaatc attctatcgg aggcgttcca gagatgtatt tttacagtta
    18001 cgtttccgga gcaacaattt caattattaa atactgggta atggacaaac agcccatttc
    18061 agttgatgaa ttagctaaac atgtgcataa tattattttt aatggtccat taagaataat
    18121 ggcagaaaac cgtttgcata aatcaaacct tgattcacta acttaagtaa tactcgcttt
    18181 tcctaaatcc tttagaaagg aactatatat catgattact tcattcagac attctgaaga
    18241 tatagataaa catattataa aaacaccatt agatcataca gcgtcatgga ttaatgtagt
    18301 agaaccagac cgagaagaaa ttgaaaatct tatggaacaa tataatatac ctgaagactt
    18361 tatacgtgac cctttggact cagaagaaag ttcccgtatt gaatatgacg aagatactgg
    18421 ttactcatta atcattattg atttacctat cgtcaattca actaatcgta gcgttctatc
    18481 ttttgtaacg attccattag gcattattat tggcaacggt attatcgtaa cagtttgtga
    18541 cgctgaaaat gaatttttag aaaatttacc taagcgtgat attaatttaa aatttcacag
    18601 cagatttgca ttagaaattt taactactat tgccgaccat tataatcgta acttacgatt
    18661 acttaataaa agtagaattc gtattgagaa agaactaaaa aataacatta ctaacaaaca
    18721 acttttcaaa ttaatggaag ttgaaaaaag tttagtatac tttttagctg ccttaaaagg
    18781 taacgataca attattaaaa agttattccg tttacctgca attaaacgtt ttgaagaaga
    18841 tgaagaatta ctagaagatt taatcattga aaataaccaa gccatcgaaa caacagaatt
    18901 acatcaacgt atcttagaaa gtatcacaac atcatacgct tccttattat ctaatgatat
    18961 gaatacgatt atgaagacat taacactttt cacggtacta ttaacgttac caacactcgt
    19021 atttagtttc ttcggtatga atgtgccgtt gccaattgat gaccatagtt atatatcttg
    19081 gattattgtg gtaggtattt cattaattct tgtcgtaatt gttagtattt tcttatggcg
    19141 taaacagaaa ttataactaa attaaaaggt atgacagctt aaagtttcat cctattgcat
    19201 ttgcaatgac tgatactttg attactgtca tacctctttt tttattctac aacttcttta
    19261 tttgcttttc ttttagataa aattaaagta actgttatag caatgatgaa tgatattgtc
    19321 ataccaacaa agtagtgtaa ccatcctgca tgtactggat tgattgaaat aaatcctggc
    19381 aatccagcag ttcctaatgc gattgcttta accttgaaga aagcaatata tgctgaacca
    19441 atacctgatc caacgatagc gccaataaat ggatatctta gttttaagtt aacaccaaac
    19501 atagccggtt ctgtaatacc aagtaatgct gaaatacctg cggcagatgc cacacctttt
    19561 aacttcttat tttgtttaat aataaagaac gctgcaattg ctgcaccacc ttgtgcaaca
    19621 ttagacattg tcgcaatcgg gaatataaat gatccacccg ttttagtggc atctgcaatt
    19681 aatgtcgttt ctacagctat aaagctatga tgcatacctg taataacaat cggagcatac
    19741 aataatccga atattaatcc accaattgca ccaccaaatt cataaagcca tgttaaacca
    19801 tctgataacc agtaacctaa ttgtcgagtg attggaccta caaatgaaaa tgttagaaat
    19861 gctgttataa aaatagataa caatggtgtt aacaaattat ctaacaccgt tggaataact
    19921 ttgcgtaacc ctttttcaat tgaggctaag atataagctg ctacaagcat aggtaacact
    19981 tgtccttgat aacctacttg attaatatgc aaaccaaaaa catcccaata tggaatagcc
    20041 ttacctgctt caactgcttt tgggaaatcg tatgcgctca ttagcgatgg atgaactagt
    20101 atcataccta atgcagcacc taaaaatgga ttgccaccaa agcgttttgc tgcactaaat
    20161 ccaattaaaa ttggtaataa tgtaaatggt gcattcgcaa aaacatttat catttcagct
    20221 aatccagcaa attgactata tacatctatc aatgatttac ctgaaaagaa taaatctttc
    20281 gcagtcaaaa tgttatttaa ccccattaat aaaccaccag caacgatggc tggtataatc
    20341 ggaacaaaga tatctgaaag catttttaca aatcgctgta acggattcat atttttagca
    20401 gattgtgctt tgacttccga agtggttgat gcttcttttc cagttaattt ttccagttca
    20461 ctaaatactt tattgactgt accagaccca ataataattt ggtattgtcc cccagtagaa
    20521 aacgtccctt taactacatc catattgttt agcgcctctt catttactaa actttcatca
    20581 tttaaaacta atcgtagtct cgttgcacaa tgcgccattg catctaaatt ctcttctccg
    20641 cctatcgcgt tcaaaatttc ttctgcggat tgcttataat tcatatattt agcctcctaa
    20701 ttagaaccgg ttccatttat tccactttat tgtaaccggt tccaaaaata tttgcaacac
    20761 tctattatca ttttatataa acacctacac catttttgat agcgcattca tttttattgc
    20821 tatactacat gcatgtatat taacattaat tatcggaggt aattttatga aagaacgtgg
    20881 ctatatcgaa cagctttggc gtgaggaaaa atatcatgta ttgttacaca gtcaacagtc
    20941 ttaccaaatg ataaggaatg ctttaaaaac ggatttatca cttcatcaag ttcaacaaat
    21001 gattgatgtt gctttgttaa ttgaaccgag tataggaagt gtatgtaatg cttttgatca
    21061 tatgtgggga tatttaaaaa aatgtgcgaa tgaagaagaa agacaacaat caaaactact
    21121 taaagctgat tttattaatg gtaaaatcga cacccaaact ttattagatt ttttagcaga
    21181 acttgctaat aaatatgatg ttcaatattt actacaaagt cgtgttttaa acacaaaaag
    21241 aaagagatag attgaaactt tagttgtaac ggacaaatag tagtcattgg agttcagcaa
    21301 ttcatacttt gtactaaagt ttactataat ctatctctca aggtttaaat gtacatatct
    21361 atattaaaat gcgtttcatg atgttagaag ataccataca catttaatta gttacagcat
    21421 aaatcaattt atacccttaa ttattacatt gtttatattt taaattcggg ggagtaattt
    21481 taagtaatat cttgttgctg ctaattctat tgttaataaa ttgatattag atgtagaaat
    21541 tgagtgtgaa agttaataat agatgattta gctagtaaca taattaattc atatatagtc
    21601 aaaaagttct gttagatact gttcttgatg aatattcttt gatgttaggt gttagctatt
    21661 ctagatgagt ttcttagatg tggatgcctg tcttgatgaa gttatctatg atgttaatat
    21721 aatacttgat gttgattctt agatgttagt gcgatttcaa gatgctgatt ctttgttgtt
    21781 gcactatctt ggtgacgttt ctagttgttt atagttatcg catctcttga tgtaaaatct
    21841 aagatgttta tgcatttcta gatgttaatt cttcgctgct taagaattat cttgatggta
    21901 aatctagttg tgccatgcat tttctcatga tgaatctaag gtgttaattc attgatgtgt
    21961 gctgtttctt gttgcttcat tatcttgatg gtgaatttcg ttgtctaatg cactttttca
    22021 aatgattatt ctaattgtta cagcaataac tagatggatt ttcttagatg ttcacttttc
    22081 tagatgttta tacttatctt gatgttttct aaacagaact tttaaacgct ttatttttta
    22141 gtagattgtt taaaatttct tagttgatgg ttattgttgt tgatttgaat aatttgtagc
    22201 gaatattttg taacagggct actaagaatt tttataacaa gaagtgattt caatcgtact
    22261 aattttcagc gtttgatgac aaaagtgtat gtccaaactt aaataatggc gataaaattt
    22321 aagtcatggg tacatttaat gttttttgat tcaaacttcc attttggtca atttgctttt
    22381 tttataacat agttgaatat caataaaag
//
LOCUS       DAMQWL010000033        21955 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.033, whole genome shotgun sequence.
ACCESSION   DAMQWL010000033 DAMQWL010000000
VERSION     DAMQWL010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 21955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21955
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.033"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..860)
                     /gene="folD"
                     /locus_tag="PF788_001167"
     CDS             complement(<1..860)
                     /gene="folD"
                     /locus_tag="PF788_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDG6303436.1"
                     /translation="MVAKILDGKQIAKDYRQGLQDQVEALKEKGFTPKLSVILVGNDG
                     ASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPK
                     QVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHADIDLEGKN
                     AVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKD
                     VVKEGAVIIDVGNTPDENGKLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLL
                     AEKMRRGIDS"
     gene            1061..1543
                     /gene="purE"
                     /locus_tag="PF788_001168"
     CDS             1061..1543
                     /gene="purE"
                     /locus_tag="PF788_001168"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002465404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDG6303437.1"
                     /translation="MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMM
                     VQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQ
                     MPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
                     "
     gene            1530..2654
                     /gene="purK"
                     /locus_tag="PF788_001169"
     CDS             1530..2654
                     /gene="purK"
                     /locus_tag="PF788_001169"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDG6303438.1"
                     /translation="MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDC
                     PCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAI
                     QLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQV
                     LINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQI
                     LFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSG
                     HYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWH
                     LHIYGKSERKDSRKMGHMTVLTNDVNQTEQDMYAKFEGSN"
     gene            2658..3362
                     /locus_tag="PF788_001170"
     CDS             2658..3362
                     /locus_tag="PF788_001170"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDG6303439.1"
                     /translation="MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKG
                     RLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRL
                     GFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLK
                     QLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGS
                     LIETYQIFLNKLEDLK"
     gene            3362..3625
                     /gene="purS"
                     /locus_tag="PF788_001171"
     CDS             3362..3625
                     /gene="purS"
                     /locus_tag="PF788_001171"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HDG6303440.1"
                     /translation="MKTIELHITLQPQVLDTQGQTLTRAVHDLGYAQVNDIRVGKVLY
                     MTVDEVSDEKVHNIITTLSEKLFANTVIEEYSYKVLDDEKENA"
     gene            3627..4298
                     /gene="purQ"
                     /locus_tag="PF788_001172"
     CDS             3627..4298
                     /gene="purQ"
                     /locus_tag="PF788_001172"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HDG6303441.1"
                     /translation="MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGV
                     LIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALL
                     HNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANN
                     QIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSW
                     REQHV"
     gene            4291..6480
                     /gene="purL"
                     /locus_tag="PF788_001173"
     CDS             4291..6480
                     /gene="purL"
                     /locus_tag="PF788_001173"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HDG6303442.1"
                     /translation="MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTET
                     GIFSVMWSEHCSYKHSKPFLKQFPTSGDHVLMGPGEGAGVVDIGDNQAVVFKVESHNH
                     PSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGG
                     YGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKT
                     GRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGA
                     AGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKF
                     LDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNT
                     SKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTN
                     KAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIY
                     QQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDF
                     EPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGL
                     LSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNI
                     DNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD"
     gene            6459..7943
                     /locus_tag="PF788_001174"
     CDS             6459..7943
                     /locus_tag="PF788_001174"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDG6303443.1"
                     /translation="MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIV
                     VSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHF
                     YDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKES
                     LRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQ
                     DIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKK
                     LAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQ
                     GVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFP
                     SFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVE
                     SFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV"
     gene            7936..8964
                     /locus_tag="PF788_001175"
     CDS             7936..8964
                     /locus_tag="PF788_001175"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDG6303444.1"
                     /translation="MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGAT
                     FDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYF
                     LDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGA
                     VEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVF
                     LEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIF
                     DWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNES
                     TAIELLGV"
     gene            8967..9533
                     /gene="purN"
                     /locus_tag="PF788_001176"
     CDS             8967..9533
                     /gene="purN"
                     /locus_tag="PF788_001176"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDG6303445.1"
                     /translation="MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFC
                     IDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASF
                     EGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRKCDIRP
                     DDSKEQLEEKVKKLEYELYPSVIAKIVK"
     gene            9548..11026
                     /gene="purH"
                     /locus_tag="PF788_001177"
     CDS             9548..11026
                     /gene="purH"
                     /locus_tag="PF788_001177"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDG6303446.1"
                     /translation="MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVP
                     VRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLY
                     PFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDS
                     LDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIA
                     GAKQLHGKQLSYNNIKDADATLALVKKFDTPATVAVKHMNPCGVGIGDTIEQAFQHAY
                     EADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEI
                     DMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPS
                     VKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVEL
                     AAQHGIKAIIQPSGSIKDQDSIDMANKHGIAMVVTGTRHFKH"
     gene            11048..12295
                     /locus_tag="PF788_001178"
     CDS             11048..12295
                     /locus_tag="PF788_001178"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDG6303447.1"
                     /translation="MNVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVH
                     TEISESDHQAILDFAKRQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEG
                     SKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTI
                     EAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHD
                     EGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG
                     PKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGY
                     PDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYKK
                     VSQIQSDHLFYRHDIANKALQLK"
     gene            complement(12560..13366)
                     /locus_tag="PF788_001179"
     CDS             complement(12560..13366)
                     /locus_tag="PF788_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HDG6303448.1"
                     /translation="MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYIT
                     ILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTES
                     LVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLM
                     ISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRD
                     GPRTYYYNVPFSYKDIIFIIVLIAIITMAYYCSITLPITGIDDVRLGRVG"
     gene            complement(13359..14759)
                     /locus_tag="PF788_001180"
     CDS             complement(13359..14759)
                     /locus_tag="PF788_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303449.1"
                     /translation="MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKST
                     LLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLP
                     REDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAML
                     DVQATEDLWTKLIELWEDQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQ
                     KYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGL
                     GEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQ
                     FITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLQNVKDQHPYELSIGQKRRLSVAT
                     ALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRL
                     KISDGALLDCDGDTNV"
     gene            complement(14774..15349)
                     /locus_tag="PF788_001181"
     CDS             complement(14774..15349)
                     /locus_tag="PF788_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HDG6303450.1"
                     /translation="MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQL
                     TNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELV
                     FAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVA
                     GVLSYLLVKALDKTGVTKLFRPAAKEDYDNL"
     regulatory      complement(15426..15526)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(15933..16067)
                     /gene="graF"
                     /locus_tag="PF788_001182"
     CDS             complement(15933..16067)
                     /gene="graF"
                     /locus_tag="PF788_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycopeptide resistance-associated protein GraF"
                     /protein_id="HDG6303451.1"
                     /translation="MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
                     "
     gene            16219..17514
                     /locus_tag="PF788_001183"
     CDS             16219..17514
                     /locus_tag="PF788_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303452.1"
                     /translation="MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVD
                     THVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDY
                     DISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHF
                     MWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRR
                     ALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAK
                     RDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFV
                     SGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLT
                     EFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP"
     gene            17939..19111
                     /locus_tag="PF788_001184"
     CDS             17939..19111
                     /locus_tag="PF788_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HDG6303453.1"
                     /translation="MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDK
                     SQYVATAYVGRQHKGLGWVLTYDKAQQINTAFFVKLFNTALAERDYYFNIDGTNAFRL
                     FNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDS
                     EYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHV
                     LNLFSYTGAFSAIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDF
                     YKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNA
                     SVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH"
     gene            19165..19707
                     /locus_tag="PF788_001185"
     CDS             19165..19707
                     /locus_tag="PF788_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF697 domain-containing protein"
                     /protein_id="HDG6303454.1"
                     /translation="MGFKNNLTSNLTNKIGNSVFKIENVDGKGAMPTTIQELRERRQR
                     AEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVK
                     ERIMSAAAIQGSQFIGKRISNAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYF
                     MNKIGKDHIQKCENVIKNVM"
     gene            19861..20127
                     /locus_tag="PF788_001186"
     CDS             19861..20127
                     /locus_tag="PF788_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HDG6303455.1"
                     /translation="MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNL
                     KSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK"
     gene            20130..21848
                     /gene="ptsP"
                     /locus_tag="PF788_001187"
     CDS             20130..21848
                     /gene="ptsP"
                     /locus_tag="PF788_001187"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HDG6303456.1"
                     /translation="MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAK
                     FNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANA
                     ATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVI
                     VGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGD
                     MIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAAN
                     IGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMGGKRVVVR
                     TLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMF
                     PMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDF
                     FSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMA
                     GDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIEL
                     VNNYVK"
BASE COUNT         7713 a         3162 c         4145 g         6935 t
ORIGIN      
        1 tacgaatcaa tacctcgacg cattttttct gcaagcaaag tattatttaa taccatagta
       61 attgttaatg gaccaacgcc accaggaact ggtgtaatag ctccagcaat ttctttaacc
      121 gcatcataat caacgtcacc ttttaatttg ccattttcat ctggcgtatt gccaacatcg
      181 ataattactg ctccttcttt gaccacatct tttgttacta aaccaggctt accaactgca
      241 ctgacaatga catcagcatc ttttaaatat gatgccatat cttttgaacg agaatgtaag
      301 attgttactg atgcattttt ttgaagtagt aacttagaaa ctggttgtcc gacaatatga
      361 cttcgtccaa ttacaactgc atttttacct tctaaatcaa tatcagcatg ttttaatatt
      421 tccatgatgc cgagcggtgt gcaaggtaca aaagtttgtt catcgatata taatttccct
      481 atatttattg gatgaaaacc gtccacatct ttttcaggat tgattgcttc taatattttc
      541 tgttcgctaa cttgttttgg taatggtact tgtaccaaaa taccacttac agaatcatca
      601 ttatttagtc tatttagttc gtttaatact tcttcttcag tagctgtttc ttccaaatgt
      661 acgatttctg aaatcatacc aattttttca gctgctttct tttttgatct aacataactt
      721 tgactagcgc catcattacc aactaatata acggataatt taggtgtaaa acccttttct
      781 tttagcgctt caacttgatc ttgtaacccc tgtctgtagt ctttggcaat ttgtttacca
      841 tctaaaattt tagcaaccat aaaaacttct cctcctattg tcaatatcct aactttgtta
      901 gtttataaaa ctaatttaca tagcaaaaga cgtaaattca aacaaaaaat caaaataaag
      961 ttcgattttt gattgaaaaa gcagaaattg cttgttatgc tatatctata atatacaact
     1021 aaagtaattc acaattcaaa cttttgaaag ggtgtacaaa gtgaaagtag cagtcattat
     1081 gggcagttct tccgattgga aaattatgca agagagttgt aacatgttgg attattttga
     1141 aattccgtac gaaaaacaag tagtatccgc acatcgtacg ccaaaaatga tggttcaatt
     1201 tgcttctgaa gcgagagaaa gaggtataaa cattatcatt gcaggcgctg gcggtgcggc
     1261 acatttacca ggtatggttg catcattaac gacgctacca gttattggag tgccgattga
     1321 aacaaaaagt ttaaagggta tagattcttt attatcaatt gttcaaatgc caggaggtat
     1381 tccggttgca acgactgcaa ttggtgcagc aggtgctaaa aacgcaggta tacttgcagc
     1441 aagaatgtta agtattcaaa atccttcttt agttgaaaaa ctaaatcagt atgaatcttc
     1501 gttaattcaa aaagtggagg acatgcaaaa tgaacttcaa taaattaaag tttggtgcga
     1561 ctattggcat tattggtggt ggtcagcttg gaaagatgat ggcacaatca gctcaaaaaa
     1621 tgggttataa agtggttgta ttggatcctt ctgaagattg tccatgtaga tacgttgcac
     1681 acgaatttat acaagccaag tatgacgatg aaaaggcact caatcaatta ggacaaaaat
     1741 gtgatgtgat tacttatgaa tttgaaaaca tttcagccca acaattaaaa ctattatgtg
     1801 aaaagtacaa tattccgcaa ggttaccaag ctatacagtt attacaagat cgcttaactg
     1861 aaaaagaaac attaaaaagt gctggtacca aagttgtccc gttcatttca gtaaaagaat
     1921 ctacagatat tgacaaagca attgaaacat taggatatcc ttttattgta aaaactagat
     1981 ttggtggcta cgatggcaaa ggtcaagttt taattaacaa cgaaaaagac ttacaagaag
     2041 gttttaaatt aattgaaact agtgaatgcg tagctgaaaa atatttgaat atcaagaaag
     2101 aagtatctct tactgttaca agaggaaaca acaatcaaat cacttttttc ccattacaag
     2161 aaaatgagca tagaaatcaa atacttttca aaacaattgt tccagcgaga atagataaaa
     2221 cagctgaggc gaaagagcaa gttaataaaa ttatccaatc gattcatttc attggaacat
     2281 ttacagttga attttttata gatagtaaca accaattgta tgtgaacgag atagcaccaa
     2341 ggcctcacaa ttccggacat tattcaattg aagcatgtga ttattcacaa tttgatactc
     2401 atattttagc agttaccgga caatcattac caaattcaat tgaattatta aagccagcag
     2461 tcatgatgaa cttactaggt aaagatttag atttattgga aaatgaattt aatgaacatc
     2521 cagagtggca cttacatatt tatggtaagt ctgagcgtaa agatagcaga aaaatggggc
     2581 atatgactgt actaacgaat gatgtaaacc aaactgaaca agatatgtac gctaaatttg
     2641 aggggagtaa ttaaagcatg acattattat atgaaggaaa agcgaagcgc attttctcaa
     2701 caaatcaaga aaatgaatta agagttgaat ataaagatga agttactgct ggaaacgggg
     2761 ctaagaaaga cacaatggca ggtaaggggc gattaaataa tcaaattact tctattatat
     2821 ttaaatattt acaagaaaat ggaatagaaa gtcactttat taaacaatta tctgaaacag
     2881 aacaattagt taagcctgtg aaaataattc cattagaagt agttgttcgt aatattgcta
     2941 gtggatctat tacaaagcgt ttaggttttg aaaatggtga agtttttaga gaaccacttg
     3001 tagaattttt ctataaaaat gatgcgttaa atgatccgtt gataacggat gaccatgtta
     3061 aattgctcaa tatagcatca gatgaagata ttgaaatact aaaatccaaa gcattaaaga
     3121 ttaataatgt gttgaaacaa ttaatggatg ctatgaattt aaaattagta gattttaaaa
     3181 tcgaatttgg aaagactgag actggtcaaa ttttgttagc ggatgaaata tctccagata
     3241 catgtcgaat ttgggataaa gctaccaatg caaactttga taaagatgta tatagaaata
     3301 acactggatc actgattgaa acatatcaaa tatttttaaa caaattggag gatttaaaat
     3361 aatgaaaaca attgaactac atatcacatt acaaccacaa gtattagata cgcaaggaca
     3421 aacgcttact cgagctgtac atgacttagg ttatgcacaa gtgaatgata ttcgtgtagg
     3481 aaaagtatta tatatgacag tggatgaggt tagtgatgaa aaggtacaca acattattac
     3541 aactctaagt gaaaaattgt ttgcaaatac agtgattgaa gaatatagct ataaagtgtt
     3601 agatgatgaa aaggagaatg cataaaatga aatttgcggt tcttgttttt ccaggttcga
     3661 attgtgatag agacatgttt aatgctgcta ttaaaagtgg tgttgaagcg gaatatgtag
     3721 attatagaga aacatcacta agtggatttg atggcgtact tattcctggt ggattttcat
     3781 tcggggatta cttaagatct ggggcaatgg ctagtgtagc gccgattatt tcggaagtta
     3841 aacgtcttgc agctgaaggt aagccagtat taggtgtttg taatgggttt caaattttaa
     3901 ctgaaatagg cttattacct ggtgcattat tgcataacga ttcacattta tttattagta
     3961 gaaatgaaga gttagaaata gtgaataatc aaacggcatt tacaaatctt tatgaacaag
     4021 gtgaaaaagt tatatatcct gtagctcacg gtgaaggtca ttattattgt actgatgaaa
     4081 tatatcaaca attaaaagct aacaatcaaa ttattctgaa atatgtgaat aatccgaacg
     4141 gttcatatga tgatattgca ggaattgtta acgaaaaagg caatgtatgt ggcatgatgc
     4201 cacatcctga aagagcttta gaaacgttgt taggtactga tagtggtgtg aaattatttg
     4261 aagcgatggt aaaaagttgg agggaacaac atgtctaaat ttatcgaacc aagcgttgaa
     4321 gaaattaaac ttgaaaaagt atatcaagat atgggattaa gtgatcaaga atatgaaaaa
     4381 gtttgcgata ttttaggcag acaacctaac tttacagaaa caggtatctt ttctgttatg
     4441 tggagtgaac attgctctta taaacattct aaaccgtttt taaagcaatt tcctacgtca
     4501 ggtgaccatg tgcttatggg gcctggtgaa ggtgcagggg tagtcgatat aggtgataat
     4561 caagccgtag tatttaaagt agagtctcac aatcatccat cagcaattga accatatcaa
     4621 ggggctgcta caggcgttgg tggaatcatt cgtgacattg tctctattgg ggctagacct
     4681 attaatttgt taaacagtct tagatttgga gaattagata ataaacaaaa ccaaagatta
     4741 cttaaaggtg ttgtaaaggg tatcggaggt tatggtaact gcattggtat tccaacaact
     4801 gctggtgaaa tcgaatttga tgaacgttat gatggcaatc cacttgttaa tgcaatgtgt
     4861 gttggtgtta tcaatcacga catgattcaa aaaggcacag caaaaggtgt aggtaattcg
     4921 gtcatttatg ttggtttgaa aactggtcga gatggtattc atggtgctac ttttgcatct
     4981 gaagaattga cggaagaaag cgaaagtaaa cgaccttctg tacaaatcgg tgatccattt
     5041 gtaggtaaaa aattaatgga agcaacactt gaagcaatta catttgatga attagttggt
     5101 attcaagata tgggtgctgc tggtttaaca tcttcatcgt ctgaaatggc ggcaaaaggt
     5161 ggtagtgggt tacatttgag attagaacaa gtgccaacac gtgagccagg tatttctcct
     5221 tatgaaatga tgctttcaga aactcaagaa cgtatgttac tagttgttga aaaaggtact
     5281 gaacaaaaat tcttagattt atttgataag cacgaattgg atagtgctgt tataggtgaa
     5341 gttacagata caaatcgttt tgttttaaca tatgatgacg aagtttatgc tgacattcca
     5401 gttgaaccac tagctgatga agcacctgta tatattttag aaggagaaga aaaagattat
     5461 aatacttcta aaaatgatta tacacacatc gatgttaaag atactttctt taaattactt
     5521 aagcatccga ctatagcatc taaacactat ttatatgatc aatacgacca acaagttggt
     5581 gccaatacga taattaagcc aggacttcaa gcatcggtag tacgtgtgga aggcacaaat
     5641 aaggcaattg cttcaacaat tgatggtgaa gcgcgttatg tatataacaa tccatatgaa
     5701 ggtggaaaga tggtagtagc tgaagcttat cgaaatttaa ttgccgtggg tgcaacacca
     5761 ttagcaatga cagattgttt aaattatggt tctcctgaaa agaaagaaat ctatcaacag
     5821 ttgatagatt caacgaaagg tatggcagaa gcatgcgaca ttcttaagac accagtagtt
     5881 tctggtaatg tatctttata taacgaaacg aaaggtactt ctattttccc aacaccagtt
     5941 gttggaatgg taggtttgat tgaaaatgta aattatttaa atgattttga acctcaagtt
     6001 ggagataaat tatatttaat cggtgatact aaggacgact ttggtggtag tcaacttgaa
     6061 aagttaattt atggcaaagt taatcatgaa tttgagtcat tagatttgag ttcagaagtt
     6121 gaaaaaggtg aatcaatcaa gaccgctatt cgtgaaggac tattatcaca tgttcaaaca
     6181 gttggtaaag gtggcttact gattacctta gctaaactaa gtgcgcatta cggtttagga
     6241 ttaaaatctt caatagatat aacaaatgca caattgttta gtgagacgca aggccgatat
     6301 gttgtttctg ttaaatcagg taaaacttta aatattgata atgcaataga aattggactt
     6361 ttaacagata gtgataattt caaggtaaca acaccatata cagagattag tgaaaatgtt
     6421 tcagatatta aacaaatatg ggaaggggca attgctcaat gtttaactac tcaggattaa
     6481 acgaagaatg tggcgtgttt ggtatttgga atcatcctga agcagcgcaa ctaacatata
     6541 tgggacttca tagtttgcaa catcgtggtc aagaaggtgc aggtatagtt gtttctgatc
     6601 aaaatgaatt aaaaggcgag cgaggattag gcttactaac tgaagcgatt aaagatgatc
     6661 aaatggaacg attaaaagga tatcaacatg caattggtca cgtccgttat gctacttcag
     6721 gtaataaagg tattgaaaat attcaaccgt ttctgtatca cttttatgat atgagtgtag
     6781 gtatttgtca taatggtaac ctcattaatg ctaaatcatt gcgtcagaat ttagaaaaac
     6841 aaggtgctat cttccattcg tcttctgata ctgaagtcat tatgcatttg atacgtcgaa
     6901 gtaaagctcc tacttttgag gaagcgttga aagaaagttt gcgaaaagtt aaaggcggtt
     6961 ttacatttgc gattttaact aaagatgcgt tatatggcgc agtagatcca aatgctatca
     7021 gaccacttgt tgtaggtaaa atgaaagatg ggacatacat ccttgcaagt gaaacatgtg
     7081 caatagatgt gttaggtgca gaatttgttc aagatattca tgcaggtgaa tatgtcgtga
     7141 ttaacgataa aggtattaca gttaaatctt atacacatca tacgacaact gcaatttctg
     7201 cgatggaata tatttatttt gctagaccag actcaacaat agctggtaaa aatgtccatg
     7261 cagtacgtaa agcttctggt aaaaaattag cccaagaaag ccctgtaaat gctgatatgg
     7321 tcatcggtgt acccaattca tcgctatcag ctgcgagtgg ttatgctgaa gaaataggtt
     7381 tgccatatga aatgggacta gttaaaaatc aatatgttgc aagaacattt attcaaccaa
     7441 ctcaagaatt acgtgagcaa ggtgtgagag tgaagttatc tgcggtaaaa gatatagtag
     7501 atgggaaaaa tatcattctt gttgatgatt ccattgttcg cggtacgaca attcgacgca
     7561 ttgtgaaaat gttaaaagat tctggtgcaa ataaagtgca tgtgcgtata gcatcaccgg
     7621 aatttatgtt tccaagtttt tacggaatcg atgtttcaac tacggcagaa ttaatttctg
     7681 caagcaaatc acctgaagaa attaaagatt atattggcgc tgattcatta gcatatctat
     7741 ctgtagatgg gttaattgaa tcaattggtt tagattatga cgcgccatat agtggcttat
     7801 gtgtagaaag tttcactgga gattatcctg cagggttata tgattatgaa gcaaattata
     7861 aagcgcattt aagtcatcga caaaagcaat atatttctaa aaacaaacac ttttttgata
     7921 gcgagggaaa tttaaatgtc taaagcatat gaacaatctg gtgtaaatat tcatgctggt
     7981 tatgaagctg tagaaagaat gtctagtcat gttaaacgta cgatgcgtaa agaagttatc
     8041 ggtggtttag gtggattcgg tgctacattt gatttatcac aattaaatat gacagcgcca
     8101 gttttagttt ctggaacaga cggagtaggt acgaaattaa aactagctat cgactatggt
     8161 aaacatgatt cgataggtat cgatgcagtc gcaatgtgtg ttaatgatat tttaacgaca
     8221 ggtgcagaac cattatattt tttagattac attgctacaa acaaagttgt tcctgaagtt
     8281 attgaacaaa ttgttaaagg tattagtgat gcatgtgttg aaacgaatac tgcacttatc
     8341 ggtggagaga ctgctgaaat gggtgaaatg tatcacgaag gcgaatatga tgtagctgga
     8401 tttgctgttg gagcagttga aaaggatgac tatgtagatg gttcagaagt gaaagaggga
     8461 caagttgtta tagggcttgc gtcaagtggc attcattcaa atggatacag tttagtgcgc
     8521 aaattaatta atgaatcagg cattgatttg gcatcaaact tcgataatcg tccatttatc
     8581 gatgtctttt tagaaccaac taaattatat gtcaaacctg tacttgcttt gaaaaaagaa
     8641 gtttctatta aggcaatgaa tcatattact ggtggaggtt tttatgaaaa tattccacgt
     8701 gcattgccag ccggatatgc tgctagaatt gatactacat catttccaac accaaaaata
     8761 tttgattggt tacaacaaca aggcaatata gacacaaatg aaatgtataa catttttaat
     8821 atgggtattg gctatacggt tatcgttgat gaaaaagatg tatcacgcgc tttgaagatt
     8881 ttagcagaac aaaatgtgga agcctatcaa attggtcata ttgtgaaaaa tgagtcaact
     8941 gcaattgaat tgttgggggt ataacaatgg ttaaaattgc gatttttgca tcaggttcag
     9001 gaagtaactt tgaaaatata gttgagcatg ttgaatcagg aaaacttgaa aatattgaag
     9061 ttacggcgct atatacggat catcaaaatg cgttttgtat agatagagca aaaaagcacg
     9121 atattcctgt ttatattaat gaaccaaaac aatttgattc aaaagcagcg tatgaacaac
     9181 atttagtaac attattaaat gaagataagg tagagtggat tattctagct ggctacatgc
     9241 gtctaattgg tccagactta ttagcttcat ttgaaggtaa aatattgaat atacatccat
     9301 ctctattgcc gaaatataag gggattgacg caataggcca agcatatcat agtggcgata
     9361 ctattactgg ttcgacagta cattatgttg atagtggtat ggatacggga gaaattattg
     9421 aacagagaaa atgtgatatt agaccggacg attcaaaaga acaattagaa gagaaagtaa
     9481 aaaaattgga atatgagtta tatccaagtg ttattgctaa aattgtaaaa taaggagtat
     9541 gtatgtgatg aagaaagcta ttttgagcgt atcaaataaa acaggtattg tagagtttgc
     9601 taaagcgtta acgcaattaa attatgaatt atattcaaca ggtggtacta aacgtatatt
     9661 agatgaagca aatgtaccag ttcgttctgt ttcagactta acacattttc cagaaataat
     9721 ggatggccgt gttaaaacat tacatccggc tgttcatggt ggcattttag ctgatcgaaa
     9781 taaaccgcag catttaaatg aattatcaga acaacatata gatttaattg atatggtagt
     9841 agttaattta tatccattcc aacaaactgt tgcaaaccct gatgtgacga tggacgaagc
     9901 aattgaaaat attgatattg gtggtccaac aatgttacgt gctgcagcta aaaactataa
     9961 acatgtaaca acaattgtac atccggcaga ttatcaagaa gtattgacgc gattaagaaa
    10021 cgattcgtta gatgagtcat atagacaatc attaatgatt aaagtttttg agcatactgc
    10081 agaatatgat gaagcgattg tacgtttctt taaaggggat aaagaaactt taagatatgg
    10141 agaaaatcca caacaatcag cgtattttgt gagaacttcg aatgctaagc acacgattgc
    10201 aggcgctaaa caattacatg ggaaacaatt aagctataac aatattaaag atgcagatgc
    10261 tacactagct ttagttaaaa agtttgatac acctgctaca gttgcggtta aacacatgaa
    10321 tccatgtggt gttggtatcg gtgacacgat agaacaagca tttcaacatg cgtatgaagc
    10381 ggatagtcaa tcaatatttg gtggaattgt tgcattaaac cgagctgtaa cacctgagtt
    10441 agcagagcaa ttgcatagta tctttttgga agtcattatt gcaccaaaat ttacagatga
    10501 agcattagat attttaaaac aaaagaagaa tgtaagatta ttagaaattg atatgactat
    10561 agacagtaac gaagaagagt ttgtttcagt atctggcgga tatttagttc aagataaaga
    10621 caattatgtc gtgccaaaag aagaaatgaa agttgttaca gaagtagcac ctacagatga
    10681 acaatgggaa gcaatgttat taggatggaa agttgtacca tcagtaaaaa gtaatgcaat
    10741 tattttaagt aataataaac aaactgtagg tataggtgct ggacaaatga atcgtgtcgg
    10801 tgctgctaaa attgcgttag agagagctat tgaaatcaat gatcatgtag cgttagtatc
    10861 tgatggattt ttccctatgg gagatacagt tgaacttgca gcacaacatg gtataaaggc
    10921 aattatccaa ccgagtggtt cgattaaaga tcaagattca attgatatgg ctaataaaca
    10981 tggtattgca atggtagtca caggcactcg acattttaaa cactaatttt aaaggggcgt
    11041 aacataaatg aatgtattag taattggtgc tggtggacga gaacatgcac ttgcatataa
    11101 acttaatcaa tcgaatctag ttaaacaagt gtttgtcatt ccaggtaatg aggcaatgac
    11161 acctatagct gaagtacaca ctgaaatttc agaatctgat catcaagcga tactagattt
    11221 tgctaaacgg caaaatgttg attgggtagt tataggtcca gaacagccgc taattgatgg
    11281 attagcagac attttacgag cgaatggttt caaagtgttt ggtccaaata agcaagcagc
    11341 tcaaatcgaa ggctcaaaat tatttgctaa aaagataatg gaaaaatata atattccaac
    11401 tgctgattat aaagaagttg agcgaaaaaa ggatgcttta acatatattg aaaactgtga
    11461 attgcccgtt gttgtcaaga aagatgggtt agctgctggg aaaggcgtta ttattgcaga
    11521 tactattgaa gcagccagaa gtgctattga gattatgtat ggtgatgaag aagaaggtac
    11581 tgttgtattt gaaacgtttt tagaaggtga agagttctcg ctaatgacat ttgttaatgg
    11641 tgatttagca gtacctttcg actgtattgc acaagatcat aaacgcgcat ttgatcatga
    11701 tgaaggacca aatactggtg gtatgggggc ttattgtcca gtaccacata ttagtgacga
    11761 tgttttaaaa cttacaaatg aaacaattgc acaacccatt gcaaaggcaa tgcttaatga
    11821 aggttatcaa ttcttcggtg tattatacat tggtgctatt ttaactaaag atggtccaaa
    11881 agtaatagaa tttaatgccc gttttggtga tcctgaagct caagtattat taagtcgcat
    11941 ggaaagtgat ttaatgcagc atattattga tttagatgaa ggaaaacgta ctgaattcaa
    12001 atggaaaaat gaatctattg taggggtcat gttggcatca aaaggatatc ctgatgcata
    12061 tgaaaaaggg cataaagtaa gtggctttga tttaaatgaa aactattttg ttagtggatt
    12121 aaagaagcaa ggtgatacct ttgttacttc aggtggtaga gttatacttg ccatcggaaa
    12181 aggtgacaat gtacaagatg cacagcgaga cgcatacaaa aaagtatcac aaatacaaag
    12241 tgaccattta ttctatcgtc atgacattgc gaataaagca ctacaactta aataagtaaa
    12301 tttaaaatac taagattagc tatgaacgaa tctataacga tagatttttt catagctttt
    12361 ttagttgtag agtctaggac attgatttct gtaccaaatt tgtgattatg catatgtaat
    12421 acaaaagagg cgccacaaca tgtttggatg aacaaaataa catgtttgtg gcacctcttt
    12481 tgtttagtat ggaataaatg gttttctttt tctatacaat gaatttctaa tttagtatct
    12541 atacaattat ggataaaatt taacctacac gaccaagacg aacatcatct atgcccgtga
    12601 tgggtaaggt gattgaacaa taatatgcca tagtaataat ggcaattaaa actataataa
    12661 agattatatc tttatatgag aaaggtacgt tgtaatagta agtacgagga ccatctctaa
    12721 atcctttcga ctccatcgca actgataatt gatgtgcctt tctaatattt tggcttaata
    12781 gaggtataat taaatgctta aatcgcttta accctctata atttgccgcg tctatcatct
    12841 gatagcgcat ttttaaagat ctgcgaagct gtattaaaga actaatcatt aaaggtatca
    12901 tacgaatggc agccatgaat gcataagcaa cttttgattt aacctttaaa tgttgcatta
    12961 aactataaaa tatcatgaca acctgagatg taagtgcgat taagataccg aaaaatgaaa
    13021 tagcaatggt tcttaatgat acatgtaaac cacgaactaa actttctgtt gtaatatgga
    13081 taaatccgaa tttcaaaatt gtatggctac cattcccgta taaaatcatg aacagggaag
    13141 agagtaatgc aaagccaata cttatagtta taaaaattgc tgtaatttta aactgagtac
    13201 cattaaacat caataagaaa actaacatta agatagtgat ataaagcata aaatcgaaat
    13261 tatgcacaaa tataataaag aaaaatagta taattccaag aaatagtttc gttataatgt
    13321 tgacatcatc aacaaatgat tgccgaactt tccattgctc atacattcgt atcaccatca
    13381 caatctagta acgcaccatc tgaaatttta agtcttcttg atggataacg ttcaattatt
    13441 tcatcgtcat gtgtaaccat gacaatactt tgtcccaaat taattcgctt ttggaaaagt
    13501 ttgatcaact ggaatgtatt atggctatca agtccaaatg tcggttcatc taaaaagata
    13561 atatcagctt tagaacttag tgcggtagct acgctaaggc gtcgtttttg accaatagac
    13621 aactcataag gatgttgatc ttttacattt tgtaaatcta aaagttttaa aagttgtatc
    13681 gtttcatcat cactttgatc tttagaaagg tgattaaaat gaatgttaat ttcatcataa
    13741 accgaatttg ttataaattg taattctggg ttttgataaa ctaggtacat gtgttttgct
    13801 gcatgtttaa tttttgttaa acgctgattt tcaaaataaa catcaccttg atatttaatc
    13861 aattgcataa ttgattcaag caaggttgtt ttaccactac catttgcccc tgtaattgta
    13921 atccactcac ctagaccaat ttctaaatct gagaatgaga gcaatgttga tttaccgcga
    13981 ataatacgtc catttttaaa ttgtaataag tgtgagtttg ttgttggaaa gtcaacacga
    14041 cttggtgcga attcccatgc acgtggatgc cacacaccat attcactgag taaatgaaca
    14101 tacttctgta atatgatttc aggacattca tcggcaatga tatttccgtt ataatccatc
    14161 aaaatgacgc ggtcgacatg attccagatg tgtttaactt tatgttcaac gattacaacc
    14221 gtttgatctt cccaaagttc aattagttta gtccataaat cttctgttgc ttgaacatct
    14281 aacattgctg tcggttcatc taaaaacaat gtttttgatt gttgaagaat ggtttcaaca
    14341 attgccaatt tctgtttcat cccgccactt aaatctttga tatacgtttc aggggtaaca
    14401 tttaaattga ccatatttaa agcattgata attaacgcat ccatgtcttc acgtggtaat
    14461 tgtctatttt ctaaaacgaa tgcaagttct tcgtatactt ttggcataca aaactggcta
    14521 tcagggtctt ggaaaataac gccacttaat gggtcaacga ttagttcatc atatttcata
    14581 ggtaattcaa ttaaattagg aacaatacca cttaatacat tcagaagtgt acttttaccg
    14641 caaccagaag gaccgagtaa aagtactttt tctttgtctt gaatagtgat atttaaatga
    14701 tcgaaaattt tacgttgacc acttggatat tttaatcgta aatcacttac ttttaacact
    14761 ctgaatgctc ctcttataag ttgtcgtaat cttctttagc agctggtcta aataattttg
    14821 ttacgcctgt cttatctaaa gcttttacta aaaggtaaga taggacgccg gcgactactg
    14881 caccactaat taatctaaat acgatgaata atgttaagtt ccaacctgca acttcattta
    14941 aataaccata gaaataatct atcgggaaag ccgcgattgc tgtacaaaaa cctgctaaca
    15001 tagctaccat aactgaacgt gattgatatt taaaaattgc aaagacaagt tcacacgcta
    15061 aaccttgtat aaaagcgtaa acgattgtcg gaatatcgaa acgacccata atgatagttt
    15121 cgccggcacc tgcagcaaat tcagccagta aagcaatacc tggttttgga ataattagat
    15181 agcagacaat cgctgccatg aaccaaaccc cgtttgttaa ttgttcgagg tgaaggcctg
    15241 tagcttgcac accattgtaa acaaaccacc ataaattgta aataactgcg aatactactg
    15301 aaataagtac ggttactagt atttcagata gctttaaacc ttttgacatt tttacatcct
    15361 cctaataaaa aaacgcacaa ccatccatag gaaagttatg cgttcacaat atatattagt
    15421 aaaacatatg tatagtaaca ctttcctacg ctagttcaag ctagatcagg ttcaaagggt
    15481 ttgagggcaa gcctcatctc agtataaaac acccctagtg tgtgcgattt atttaattaa
    15541 ttatactgta agacgtttgt aaacttatgt caataggttg tcttcatgaa atttcgttta
    15601 attcgattta aaatttataa tattagcatt ggatttaaat tgaagatgta gtaggaatgt
    15661 tagtaattaa agatataaaa atatgtgaca tgtaataata ttgagctgat aaatgaagag
    15721 ggatacttat caatcatacc tctttaacaa cagtgaagaa cccgtgcata atggcttacg
    15781 aattatagtt tataaggaag aagagggata catgcgccga gcacatgcat aaaagcccct
    15841 aacaactaaa agttgtaagg aaggagaggg atacatgcgc cgagcacatg cataaaatcc
    15901 cctaacaact aaaagttgta aggggattta aattaattta gtgtatcttg gatatcttgt
    15961 tttgtttgat taatatcttc tgttttttct tcttttttat cttttaattt ttcttcaact
    16021 tctttagctt tttctgctgc ttttttattt tgattttcat tagacatgat taattcctcc
    16081 caaattggat aattatttat atataaatct tacccggttg tactttcgtt aaacttttct
    16141 aagtctatag cactatttat tcatttatct aaagacaaca acattagatt aatatataat
    16201 gattttgagg tgaacataat gtcttttctt aggaaacacg ccgaaattat ttttagctat
    16261 ttaatcggta tcgtttcact cttcactggt ctcattattt taattaactt gccattaatt
    16321 aaacaattaa atggtggtaa aaaagttgat acacatgttc ataatgtgtg ggaatttctg
    16381 aatgcatttt tcagtgaaat tattaaagta atgagtcgat ttataggtaa tttccctata
    16441 gttagtgcaa ttgtgataat tatattcggt attttagtta tgttgattgg tcatacatta
    16501 cttagaacta ttaagtatga ctatgatatt tctatctttt tcttagttat cggtatcatg
    16561 tactttatta ttactcttat attaatgact caagtttatg gattctttgc agtgattttc
    16621 attattccat ttacaattca tataggatat atcgtctata aagatgaatt gaatcaggaa
    16681 aatgtaaaaa atcatttcat gtggataatt gtgagttatg gtataagtta cttaattaca
    16741 caaattgcat tgtatggcag aattgatgct aatgaaatag agtcaattga tatcttaagt
    16801 gtcaatgctt tctttataat tatgtggtta cttggtcaaa tggctatttg gaatttcttg
    16861 ttcttgcgcc gagctttacc tttaacaaag caagaattag gtgaagagga gccagaatta
    16921 tcaagaacaa gtaaagggaa tgtcacgaat caaactaaaa ttcacttgaa acaactccaa
    16981 gataagacta cagaatatgc acgtaagaca agaagaagtg tcgatttaga taaaattaga
    17041 gctaaaagag ataaattcaa aaagaaagtt aatgatatta tcgatattca agaagacgat
    17101 attcctgatt ggatgagaaa accgaaatgg gttaaaccaa tgtatgtcga actattttgt
    17161 ggtgtcgtca tctttttatt cacattttta gaatttaata atcgtaatgc attatttgta
    17221 tctggtgatt ggaaattatc acagacacaa tatgttattg aatgggttac attattaatt
    17281 ctgttattca ttattatcgc atatatcgct acaacgttaa ctttccactt gaaaggtaag
    17341 ttttattatt tacaattatt tatggggagc attttattct ttaaattgtt aacggaattt
    17401 ataaatataa tgattcatgg actattactt tcagtgttca ttacgccaac attactatta
    17461 atgttattgg caatcatcat ttcttattcg ttacaattac gagagcgacc ataattaaaa
    17521 gcattataaa agtactatct attaaacatt ttgatgtgta cgctataagt tagatatatc
    17581 tctaacttac ttagatacag gtcaatgaag tttatggata gtactttttt tgtaactaga
    17641 tttgattgat tcaggtgatg tgaattaagt attgaaaatt gtatacaaag ttttagtgca
    17701 aataaaatag ttgaaaagtt atccatttgt aaaatcaaga aaactagtaa atagttgaag
    17761 cgacttatgg aatttgcgaa acgatatata gtatttcctt tgtagaaatt taacatatat
    17821 cattcgaatt actaatttgt taaaatcaac agtaagatta gaagtagatg atattgaaat
    17881 ttggcaaaca atttaatcta tataaaacta caacgaaaca cagaaaggaa gttgtcagat
    17941 gaaaatagca actctgaaca aaggcaaaga aacaaaatat tttaatggat atcctttaat
    18001 tgaagaagag gatatctatt cacaagatca tttaaaagaa ggagatattt ttcaaattgt
    18061 gactgataaa tcacaatatg tcgcaacggc ttatgttggt cgccaacata aaggattagg
    18121 ttgggttcta acatacgata aagctcaaca aatcaacaca gctttctttg taaaattgtt
    18181 taatactgca ttagcagaac gtgattatta ttttaatata gatggaacaa atgcttttag
    18241 attatttaat gctgaaggtg atggtgttgg gggattaaca atcgacaatt acgatggtca
    18301 tttgttgatt caatggtact caaaaggtat ttataaattt aaatatgcca ttcttgaagc
    18361 ggttagaaaa gtatttgatt ataaatctat ttacgaaaaa gtaagattta aagacagcga
    18421 atatagtggt ggttttgttg aaggagatgc acctgagttt ccaattgtta tcgaagaaaa
    18481 cttcacattt tataatgtag accttgaaga tggtttgatg acaggtatct ttttagatca
    18541 aaaagaagtg cgcaagaaat taagggatca atatgccaaa gaacgccatg ttttaaactt
    18601 atttagttat acaggtgctt tttctgcaat agcagcaagt gaggcatctt caacaacaag
    18661 tgtagatttg gctaatcgtt ctcgtagttt aactgaagaa aattttggat taaatgctat
    18721 tgatcctaaa tcccaatata tttatgtcat ggacactttt gatttctata aatatgctgc
    18781 acgacatgga catagttatg acacgatcgt gattgatcca cctagctttg cgcgtaacaa
    18841 aaaacgtaca ttttcagtgc aaaaagatta tgacaaatta attaatggcg ccttaaatat
    18901 cttatcatct gaaggaacat tattgttatg tacaaacgca agtgtatatc cattaaagca
    18961 atttaaaaat actattaaaa agacgcttga agagagtggc gttgattatg aattaactga
    19021 agttatggga ttaccaaaag attttaaaac gcatccacat tataagccat ctaaatattt
    19081 aaaagctgtt tttgtaaata ttagacatta atttgataaa aaggggtata gtaacttatt
    19141 gagaaaaaga agggtgataa tattatggga ttcaaaaaca atttaacatc aaatttaaca
    19201 aataaaatcg gtaattcagt ctttaaaata gaaaatgttg acggaaaagg tgcaatgcca
    19261 acgacgattc aagaattgag agaaagacga caacgtgctg aagcaattgt aaagagaaag
    19321 tctttaatgt catcaacaat gagcgttgtt ccaattccgg gtttagattt tggtgttgat
    19381 ttaaaattaa tgaaagatat tatcgaagat gttaataaaa tttatggttt agatcataag
    19441 caagttaata gccttgggga tgatgtgaaa gaaagaatta tgtctgcagc agcaattcaa
    19501 ggtagtcaat ttattggtaa aagaatttca aatgcatttt taaaaattgt aattagagat
    19561 gtagctaaac gtactgctgc aaaacaaaca aaatggtttc ctgttgtagg acaagctgtg
    19621 tctgcatcta ttagttacta ttttatgaat aaaattggaa aagatcacat tcaaaaatgc
    19681 gaaaatgtta ttaaaaatgt catgtaggtg ctataatagt tttgcaattt gcaaatttta
    19741 ctgaaaccgg ttttaaacga attgaattta aagcatggtt ttggtaaagt taatgtataa
    19801 aactaagtta gtattgtaat aatattgaag attctaacta tacgaaggag aaatgtaatt
    19861 atggaacaaa attcatatgt aatcatcgac gagactggta ttcacgctag accagcaaca
    19921 atgttagtac aaacagcttc aaaattcgat tctgatattc aattagaata taacggtaag
    19981 aaagtaaact taaaatcaat catgggtgtt atgagccttg gtgttggtaa agatgctgaa
    20041 attacaattt atgctgacgg tagtgatgaa tctgacgcca ttcaagcaat cagtgacgtc
    20101 ttatcaaaag aaggattgac taaataatca tgtctaaatt aattaaaggt attgccgcat
    20161 ctgatggtgt cgcaattgct aaagcttatt tattagttga gccagactta acattcgaca
    20221 aaaatgaaaa agtcactgat gttgaaggag aagttgcaaa gttcaatagc gctatcgaag
    20281 cttctaaagt tgagttaact aaaattagaa ataatgcaga ggttcaacta ggtgctgata
    20341 aagctgctat ctttgatgca catttattag ttttagatga ccctgaatta attcaaccaa
    20401 tccaagataa gattaaaaat gaaaacgcta atgctgctac agcattaacg gatgtaacaa
    20461 cacaatttgt tacaattttt gaatctatgg ataacgaata catgaaagaa cgtgcggctg
    20521 atattcgcga cgtttctaaa cgtgtgttat cacatatttt aggtgtagaa ttaccgaatc
    20581 cgagtatgat tgatgaaagc gttgttattg tagggaatga cttaacgcca tctgatactg
    20641 ctcaattaaa taaagaattc gtacaaggtt ttgctacaaa cattggcgga agaacaagtc
    20701 actctgcaat tatgagtcgt tctttagaaa ttccagcaat tgttggtaca aaatcaatta
    20761 ctcaagaagt taaacaaggc gacatgatta tcgtagatgg attaaatggt gatgtaatcg
    20821 ttaatccaac tgaagatgag ttaatcgctt atcaagataa acgtgagcgt tattttgctg
    20881 acaagaaaga attacaaaaa ctacgtgatg ctgatactgt tacagttgat ggtgttcacg
    20941 cagagcttgc tgcaaatatt ggtacaccta atgatttgcc aggtgttatt gaaaatggtg
    21001 cacaaggtat cggcttatat agaactgagt ttttatatat gggtcgtgac caaatgccta
    21061 cagaagaaga acaatttgaa gcttataaag aagtattaga agcaatgggc ggtaaacgtg
    21121 ttgttgtacg tactttagat ataggtggag ataaagaatt atcatactta aacttgcctg
    21181 aagaaatgaa tccattctta ggttaccgtg cgattcgttt atgccttgcg caacaagata
    21241 ttttcagacc acagctacgt gcattattac gtgcatcagt ttatggtaag ttaaatatca
    21301 tgttcccaat ggttgcaaca attaacgaat ttagagaagc taaagctata ttattagaag
    21361 aaaaagaaaa ccttaaaaat gaaggtcatg acatttcgga tgatatagaa ttaggaatca
    21421 tggtagagat acctgcaaca gcagcattag ctgatgtctt tgctaaagaa gtagatttct
    21481 tcagtatcgg tacaaatgat ttaattcaat acacattagc tgctgaccgt atgtcagagc
    21541 gtgtatcata tctataccaa ccatataacc cttcaatctt acgtttagtt aaacaagtta
    21601 ttgaagcgtc acataaagaa ggtaaatgga caggtatgtg tggtgaaatg gctggagatg
    21661 aaacagctat tccattattg cttggtttag gtttagatga gttctctatg agtgcaacgt
    21721 ctattctgaa agcaagaaga caaattaatg gtttaagtaa aaatgaaatg actgaacttg
    21781 ctaaccgtgc agtcgactgt gcaacgcaag aagaagttat tgaattagtt aacaactacg
    21841 taaaataatt aattctttcg aaagacagaa ttataaataa acccgaagta ttcattgtaa
    21901 gtaattatga atacttcggg ttctttttta tgatttatgt taatttcaat ggaat
//
LOCUS       DAMQWL010000034        21768 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.034, whole genome shotgun sequence.
ACCESSION   DAMQWL010000034 DAMQWL010000000
VERSION     DAMQWL010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 21768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21768
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.034"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(782..1639)
                     /locus_tag="PF788_001188"
     CDS             complement(782..1639)
                     /locus_tag="PF788_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDG6303457.1"
                     /translation="MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLAT
                     GRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIY
                     YEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEG
                     EYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMI
                     AHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAK
                     YLAEHFLAE"
     gene            complement(1707..2489)
                     /locus_tag="PF788_001189"
     CDS             complement(1707..2489)
                     /locus_tag="PF788_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303458.1"
                     /translation="MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTL
                     LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI
                     SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMFAKAQQYIGYLSTGEKQRVMIARALMGQ
                     PQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLK
                     DGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE"
     gene            complement(2721..4526)
                     /gene="glmS"
                     /locus_tag="PF788_001190"
     CDS             complement(2721..4526)
                     /gene="glmS"
                     /locus_tag="PF788_001190"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDG6303459.1"
                     /translation="MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTV
                     FKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGV
                     IENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALG
                     LLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKD
                     EVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEG
                     NLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMP
                     LLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAG
                     PEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIM
                     EQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIE
                     EGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTP
                     LVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE"
     gene            5207..6745
                     /locus_tag="PF788_001191"
     CDS             5207..6745
                     /locus_tag="PF788_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HDG6303460.1"
                     /translation="MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFID
                     NGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPM
                     LLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLM
                     KFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQS
                     ILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLF
                     IAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFV
                     VAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETS
                     SSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGIND
                     ITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKK
                     DDQA"
     gene            6780..8912
                     /locus_tag="PF788_001192"
     CDS             6780..8912
                     /locus_tag="PF788_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HDG6303461.1"
                     /translation="MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKG
                     VEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALI
                     QAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKR
                     EFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPY
                     QLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYD
                     VTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTL
                     VDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEI
                     AFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLDQVFSEIERITQASVSDLK
                     SLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMI
                     DKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKI
                     VSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNM
                     IKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLES
                     IDTFMENPQELETLLRNKFLERIKKQFI"
     gene            8924..9358
                     /locus_tag="PF788_001193"
     CDS             8924..9358
                     /locus_tag="PF788_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDG6303462.1"
                     /translation="MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAM
                     KDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGK
                     DGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA"
     gene            9358..10464
                     /locus_tag="PF788_001194"
     CDS             9358..10464
                     /locus_tag="PF788_001194"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDG6303463.1"
                     /translation="MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDH
                     QYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFA
                     PFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNEN
                     ILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFA
                     GKATVLDAVEDSSIEAGLRRVLAETSQYITNEFDFTEAEQAAYVEKIIDRFNNSYLSD
                     EVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKN
                     NYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS"
     gene            complement(10783..18219)
                     /locus_tag="PF788_001195"
                     /pseudo
     CDS             complement(10783..18219)
                     /locus_tag="PF788_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500880.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
     gene            complement(18496..19851)
                     /locus_tag="PF788_001196"
     CDS             complement(18496..19851)
                     /locus_tag="PF788_001196"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDG6303464.1"
                     /translation="MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPR
                     VLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISAS
                     HNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQK
                     YLSYLKSTVDVNFEGLKIALDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKC
                     GSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQE
                     LNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVM
                     MDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDV
                     KEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLD
                     K"
     gene            complement(19878..20810)
                     /locus_tag="PF788_001197"
     CDS             complement(19878..20810)
                     /locus_tag="PF788_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbbR-like domain-containing protein"
                     /protein_id="HDG6303465.1"
                     /translation="MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTI
                     QDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQ
                     EKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQ
                     TVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNL
                     QVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDL
                     DGISESTEKTVKINLPEHVTKAQPSETKAYINVK"
     gene            complement(20812..21621)
                     /locus_tag="PF788_001198"
     CDS             complement(20812..21621)
                     /locus_tag="PF788_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00159 family protein"
                     /protein_id="HDG6303466.1"
                     /translation="MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQL
                     LKGILVIVIGQQISMILNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGSFL
                     KRYTSNTYSKDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIAMDSNIS
                     QELLINVFIPNTPLHDGAMIIQGTKIAAAASYLPLSDSPKISKSLGTRHRAAVGISEV
                     SDAFTVIVSEETGDISVTFDGKLRRDISNEIFEELLAEHWFGTRFQKKGVK"
BASE COUNT         6276 a         3846 c         3472 g         8174 t
ORIGIN      
        1 caacatctaa aagccatttt cataataatg ttaaatcatt agaatgtata aagattccaa
       61 ttaataaaaa tagataaaat gcaataaagt tccaaatact tattattatt catcacaaat
      121 tacgtgatgc cctctacaac actaaatcaa ggatgatatt tattttatat acattagcat
      181 tcattgtttg cttacccaca ttatcctgtt tagtcttttt tataactcta gtcttgaatg
      241 tcatatttac aaagaaaaaa acactaaaat atttaaaact aacactattt attcactttg
      301 ttcttttata gcacctttta tgtttatttt cttgtattca ataaatagta tggagatgat
      361 aatttaaagt agatatattt gaagtatact atagagtaaa ttatattggg gaaatatgta
      421 aacgaaccgg ttgattttat agtggattaa cacttcatag agaatataat caagaacaaa
      481 aacagtcaat aggtgtgaat ttttttaaag acggatctgt tgctactaaa aaaagaagta
      541 tacaattcaa tagttaaacc ttaaaacaag aaatattatt caaaatcaat gaatttccta
      601 tcttattagt tttaacaata tttattctca tagagtttgt ccaattaaat atagatgatt
      661 caaatattta taagcataca aaagagcagt aagacatttt ctaatagaaa ataactttac
      721 tgctctttgt acattactca tcaactattg taaattaaat aataaataac tacctatttt
      781 attattcagc taaaaaatgc tctgctaaat attttgctgc gccatcctct tcattcgtgt
      841 atgccgttac atctgaagtt aatgcttgga tttcagggcg tgcatttttc atagcaactg
      901 tataatgacc aaattcaaac attgctctat cattgtcgct atctccaata actaacgttt
      961 cttcttgatg aataccaaaa tgtgcaatca tttctttaat gcctgtacct ttatcagttt
     1021 gataagccat tgtttccgca ttaaatcttg atgaatttga aacactaatc tgtagttgca
     1081 catgattttg ctttaattca tctctaaatg ctgttatttt ttctaaatta gaactgaata
     1141 gataaatttt tgaatattca ccttcaggaa acttagttac ccaatctatc ttaccagcaa
     1201 gcgcatcttg tcttgaagac cattcactat gacttacgcc attaatagga tcttgactac
     1261 gaatcatatc tcgcatccat gtttcatctt cttttaaaga aactctatta ccttcaaaag
     1321 gaaatacctc ataataaatt tgttggcgct tagctaaatt agtaatttgt tgcacttgag
     1381 ccaatgataa accatgcttg aagataattt ctccatctac ttctccaatt gttccatttg
     1441 aactaatgat gccattaacc gcaaaatctt gaggtacaag ttgatgtatt tcagaatgcg
     1501 aacgtcctgt tgccaaaaat actttatatc ctttctctct caattgatta atgacatctt
     1561 tcgtatacgt tgatgcttga ttattttcat gtaaaattgt tccatccatg tccaaaaata
     1621 ttgcttttac gttatccata ttgccctcca ctgtccattt tatcttaatt aaattttgtc
     1681 attattactt attatttgca aaatatttac tctaacattg ccatagaaaa tcgattattc
     1741 catctttgaa ctgctacatt tttctggaaa aatcgtgaca tgttttcaga agttaatatg
     1801 tcttctacag cgccttgttg aatactttgg ccatctttta gcagtaaaat tttggaaaag
     1861 ttagcagtta tttcttcaat aaagtgcgtc acataaatca tcgcaagcgt tggatatgaa
     1921 tctgacaatg agtcaagtat acttaacaac gattctcgtg caataaagtc taaaccagct
     1981 gctggctcat ctaaaattaa aacctggggt tgccccatta aagctcgtgc aatcatcact
     2041 cgttgttttt caccggtaga taaataacca atatattgtt gcgctttagc aaacattcca
     2101 actaatttaa gtaattgatg tgcttcatta cgtatctcat catcaatatc ttgataaaca
     2161 ccaattgatt taaaggcacc gcttatcacc acatcgatta ctctttcacc ctcttgaaac
     2221 ttttccagta aactatgaga tacaaaacct atatgttgtc gtacagtctc tgcagaatac
     2281 cctaccttgc ctggcatttt accgaaaagg ttaacagttc cagatgttgc aggctcatac
     2341 gcatttaaaa tatttagaag tgttgtcttg ccagcaccat tcaacccata taatatccat
     2401 ttatcacctt tagcaatttg ccaagaaatc ttttttaaaa ttgtttttcc ttgcttcatt
     2461 cgcccaattt gatctaattg aattaacatg cgaggtcacc cctttattgc tactccatac
     2521 ttctcataaa atcatattaa cataacaccc ttaattgtca gactatttaa ataaataaaa
     2581 cacttcattt ttacgcattt ctgccaaatt aagatgaagt aaaagctaag tcgacctaaa
     2641 aaagcaccct tctagtcgat taatctaaaa gggtgccata tactttaatt ttaatacatg
     2701 attgattcta aaaaagtgaa ttattccaca gtaactgatt tagcaaggtt acgtggttta
     2761 tcaacatcta aatctctgtg taatgctgca tagtatgaaa ttaattgtaa tgcaaccact
     2821 gatactaatg gcgttaacaa ttcatgtaca tgaggaatga cataagtgtc gccttctttt
     2881 tcaagaccct ccatagaaat aatacatgga tgtgcaccac gtgctactac ctctttaacg
     2941 ttaccacgaa ttgataaatt aactttctct tgtgttgcta aacctacaac tggtgtacct
     3001 tcttcgatta aggcaattgt accatgttta agttctccac cagcaaaacc ttctgcttga
     3061 atgtaagaaa tttctttaag ttttaacgca ccttctaaac ttacgttata gtcaatagta
     3121 cgtccgataa agaatgcatt gcgtgttgtt tctaagaaat ctgtagcaat ttgttccata
     3181 attggtgcat cgtcaacaat tgcttctatt gctgttgtta cttttgctaa ttctctcaat
     3241 aaatcaatat ctgcttcacg accatgctct tttgcaacga tttgagacaa gattgataat
     3301 actgcaattt gtgcagtata tgcttttgta gatgcaactg cgatttcagg acccgcgtgt
     3361 aataacaatg tgtggtctgc ttcacgtgat aaagttgaac ctgcaacatt agtgattgtt
     3421 aatgatttat gacctaattt attagtttca actaatacgg cgcggctatc tgcagtttca
     3481 cctgattgag aaatataaac gaacaatggt ttttcagata ataatggcat gttgtagaca
     3541 aactctgatg caacgtgtac ttcagttggt acgccagccc atttttctaa aaattcttta
     3601 cctactaaac ctgcatggta gcttgtacct gctgcaataa cgtaaatgcg gtctgcttct
     3661 ttaacatcat tgatgatgtc ttgatcaatt ttcaagttac cttctgcatc ttgatattct
     3721 tgaataatac gacgcattac tgctggttgt tcatgaattt cttttaacat gtagtgtgca
     3781 taaacacctt tttcagcatc tgatgcatca atttcagcaa tatatgaatc acgttctaca
     3841 acgtttccat ctgcatcttt aataataact tcatcttttt taacaataac gatttcatgg
     3901 tcatggattt ctttatattc gcttgtcact tgtaacattg caagtgcgtc tgatgcgata
     3961 acattgaaac cttcaccaac acctaataat aatggtgatt tatttttagc aacatagatt
     4021 gtgtctttgt cttcagcatc taataaacct aatgcatatg aaccatgtaa taatgacaca
     4081 acttttgtaa atgcttcttc agttgaaagt ccttgatttg aaaagtattc aactaattga
     4141 acgataactt ctgtatctgt ttctgaaatg aatgatacac cttgtaagta ttcacctttt
     4201 aactcttcat agttttcaat aacaccgtta tgaactagag taaaacggcc atttgatgat
     4261 tgatgtggat gagagttttc atgattcggt acaccgtgtg ttgcccaacg tgtgtgaccg
     4321 attccaacag gtccatcaaa atcgctacta tcagcaactt tacgtaattc tgcaatacga
     4381 cctttttctt taaatacagt tgtattatca tcatttacta ctgcgatacc tgcagagtca
     4441 taacctctgt attctaattt ttctaaacct tttaataata attctttggc attatcatag
     4501 ccaatataac caacaattcc acacataacg acattttcct ccatattgga atagtacgcg
     4561 taaattatga tttattgccg ataatttaga ttgacaatct gctttcataa tataaatagg
     4621 aacatgctat catcgcattc atccataaca aattaagcat agttattttt acaactatac
     4681 aaattgctca cactgtactt tccatattaa tattttttat attcaatttc tggcgatctt
     4741 attaactttg tccattaagt caccctaatg ttttacttaa taagctaacg aatgagccac
     4801 atccgggata gcatccgccg atctattcga tcactatcct cctcgtctac aaatacatat
     4861 attgcactct ataaaggcca ctcatatatt aacctttaat cttcaaatac aaatatttat
     4921 ttgcacaggc gctttaactg tactgccgaa ctttccccct ttccattaat cattattgta
     4981 caacggtgtt gttttgtttt gcaaatattt tcacaataaa attttaaaaa tcctaaaaca
     5041 atttttttgt tttacttttt caaaatatct atactgtcac attgatgaca ctttatttaa
     5101 ttttgtcaca tttattttga caaagttgat ttttgtttat attgagtaac aagtaacctc
     5161 tctatacact atatatagtc acatatatta aaaaagaggt gtaaacatgt cacaaactga
     5221 agagaaaaaa ggaattggtc gtcgtgttca agcatttgga tcattcttaa gtagtatgat
     5281 catgccaaac attggcgctt tcatcgcttg gggttttatc gcggccattt ttatagataa
     5341 tggatggtta cctaacaaag atttagctac tttagcagga ccaatgatta cttatttaat
     5401 cccattattg atcgcattta gtggtggtcg tttaatttat gatttacgtg gtggtatcat
     5461 cgcagcaaca gcaactatgg gggtcatcgt tgcattacct gatacaccaa tgttacttgg
     5521 tgcaatgatt atgggtccac ttgttggttg gttaatgaag aagaccgacc aattgattca
     5581 acctagaacg ccgcaaggtt ttgaaatgtt atttaataac ttttctgctg gtattttagg
     5641 atttatcatg acgattgcag gatttaaaat tttagcacca cttatgaaat ttattatgca
     5701 tattttatca gtggcagttg aagcattagt acatgcacac ctacttccac ttgtaagtat
     5761 tttagtagag cctgcaaaaa ttgtattttt aaacaatgcg attaaccatg gtgtattcac
     5821 accgcttggt gcagatcaag ctgcaaaagc tggtcaatca attttataca caattgaatc
     5881 taaccctgga ccaggtttag gtatcttact tgcttatatg atttttggaa aaggcactgc
     5941 aaaagcaacg tcatatggtg ctggaattat ccacttctta ggtggtattc atgaaattta
     6001 tttcccatat gtattaatgc gtcctttatt atttatcgct gttattttag gtggaatgac
     6061 tggtgttgca acttatcaag caacaggatt tggatttaaa agtcccgcgt caccaggttc
     6121 atttatagtt tactgtttaa atgcacctag aggtgaattc ttgcacatgt tactcggtgt
     6181 cttccttgct gcacttgtat cattcgttgt agctgcttta attatgaagt tcactagaga
     6241 accaaagcag gatttagaag ctgcgacagc tcaaatggaa aatactaaag ggaaaaaatc
     6301 aagcgttgct tctaagttag tatcttctga taaaaatgtt aatacagaag aaaatgctag
     6361 tggtaatgtt agtgaaacat cttcatcaga tgatgatcct gaagcgctat tggataatta
     6421 caacactgaa gatgttgatg cacacaatta caataatata aatcatgtta tttttgcctg
     6481 cgatgcgggt atgggttcta gtgcaatggg tgcaagcatg ttacgtaata aatttaaaaa
     6541 ggcgggcatt aatgatatta cagttacaaa tactgcgatt aatcaattgc caaaagatgc
     6601 tcaattagtt atcactcaga aaaaactaac tgatcgtgct attaaacaaa caccaaatgc
     6661 catccatatt tcagtggata atttccttaa ttcaccaaga tatgaagaac ttttaaataa
     6721 tctaaaaaaa gatgatcaag cataataatt aaataaatta aaaaatggag gataccgcca
     6781 tgttattgag tacacgtgaa aaagaaatga tagccctatt gattaagtac cacggtcaat
     6841 atatcactat acacgacatt gctcagcaac ttgcggtgtc ctctcgtact attcaccgtg
     6901 aattaaaagg tgttgaagca tatttaactt cattttcatt aactttagaa cgcgcaaaca
     6961 aaaaagggct acgcattgct ggcacagatt ctgatttaaa cgatttgaag caatcgattg
     7021 cacaacatca aaccattgac ttatctgttg aagagcagaa agtaattatt atatacgctt
     7081 tgatacaagc caaggagcca gttaaacaat atagtttagc gcaagaaatt ggcgtttctg
     7141 tccagacttt agcaaagatg ttagatgatt tagagcttga tttaaataag taccaactat
     7201 ctttatctcg aaagcgtggc gaaggcattt acttggtagg tactgaatca aagaaacgtg
     7261 aatttttaag tcaattaatg gtgaataact taaatagtac tagcgtttat tcagtaattg
     7321 aaaatcattt tgtctttcat tcattaaatc aaatccacaa agactttgtt gacttagagc
     7381 gcatttttaa tgttgaaaga ctattaatgg actacctaag tgccttaccc taccaactta
     7441 ccgaatcaag ttatttaact ttaactgtcc atatcgtgct ctccatttca cgtataaaaa
     7501 atggagagta tgtcgcatta aacgatgata tttatgattc tgtacaaaac acatttgaac
     7561 acaaagtagc aagcgaactt gctgataaac ttggtcaaat atatgacgtc acgtttaatc
     7621 aggcagaaat tgctttcatt actatccatt tacgtggagc taaacgaaaa aatcttaatg
     7681 atacatcatt aaataatcgt tgtgaagaaa acaaaattaa agcgtttgtt aacaaagtag
     7741 aaatgatttc cggtatgaca tttgcagatt tggatacttt agtagatgga ctgacgctac
     7801 accttaatcc tgcaatcaat cgtttgcaag ctaatatcga gacctataat ccgttaacag
     7861 acatgattaa gttcaaatat ccaagactat ttgaaaatgt aagattagct ttaaatgatt
     7921 gttggcctga tttgattttt ccagagagtg aaattgcttt tatagtttta cactttggtg
     7981 gctcgattaa aaaccaaggt aatcgatttt taaacatatt agtcgtttgc agcagtggta
     8041 tgggaactag tcgtctatta tcaactcgtc tagatcaagt ttttagtgag attgagcgta
     8101 ttacacaagc atcagtcagc gatttgaagt cactagattt aagtcaatat gatggcatta
     8161 tttctactgt gaatttagac atcgactccc cctatttaac ggtaaaccca ttattaccag
     8221 atagtgatat cagttatgtc gcacagtttt taaatacaaa gtctacgttc caagagacgc
     8281 atgataaatc atcaaacatg attgataagg atgatgttca tgttgaaacg aaagatgttg
     8341 atggcaacac atcttttgaa aatgaacaaa cttcatactt aacttcagtt ttcgaaaaac
     8401 atttaagtga cgaaaaatca gaacaattat tgcatcatat gcgttcgggt ttaactttgc
     8461 ttgattcagt gaaaatagtt agtaccgaag ttaaacagtg gcaaacatat atcgcagatt
     8521 atctatatca atgcgatgta ataaacgatc caacgtcatt cgctgaacta ctagagcaac
     8581 gattgattga caatccagga tggatattaa gtccatatcc tgttgcaata ccacacctaa
     8641 gagacaatat gattaaacac cctatgattc taatcacagt tttagaagaa ccgttaacat
     8701 tgcctagtat tcaaaatgac aatcaaacaa ttaaatatat gatttccatg tttatttctg
     8761 acaatgattt tatggcatca ctggtaagtg acttgtccga atttttaagt ttgaaattag
     8821 aatctattga tacttttatg gaaaatccac aggaacttga aacattatta agaaacaaat
     8881 ttttagaacg aattaaaaaa caatttattt aggagtgtac aaaatgagcg aattatttag
     8941 taatgacaat atctttttaa atgtaaatgt taacagccaa aatgaagcaa ttgaaaaagc
     9001 aggtaaagcc ttagttgata gtggtgctgt aacagatgct tatattcaag caatgaaaga
     9061 tcgtgagcaa gtcgtatcaa catttatggg aaatggctta gcaattcctc atggcacaga
     9121 tgaagctaaa acaaatgtga ttcactcagg tttaacatta ttacaaatcc ctgaaggcgt
     9181 tgactgggat ggcgaagtag ttaaagttgt cgtgggaatt gctggtaaag atggcgaaca
     9241 tttagacttg ttatctaaaa ttgcaattac atttagcgaa gaagaaaatg tggatcgtat
     9301 cgttcaagca aaatctgcag aagaaattaa acaagtattc gaggaggcag atgcataatg
     9361 aaagcagttc actttggtgc tggtaacata ggtcgtggtt tcattggtta tattcttgca
     9421 gacaacaatg ttaaagtaac atttgcagac gtcaatgaag aaatcattaa tgctttagct
     9481 catgatcatc aatacgatgt tattttagct gatgagtcta aaacaacgac gcgcgtgaat
     9541 aatgttgatg caattaattc aatgcaacct tctgaagcgt tgaaacaagc aattctagaa
     9601 gctgatatta ttacaacagc tgttggtgtt aacatactac ctattattgc taaatctttt
     9661 gcgcctttct taaaagaaaa aacaaaccat gttaatattg ttgcttgtga gaatgctatt
     9721 atggcaactg atacattgaa aaaagcagta cttgatatta ctggccctct tggtaacaat
     9781 attcattttg ctaactcagc agttgataga attgtaccat tacaaaagaa tgaaaatata
     9841 ttagacgtta tggttgagcc attttacgaa tgggttgttg aaaaagatgc atggtatggt
     9901 ccagaactaa accatattaa atatgttgat gatttaacac catatattga gcgtaaatta
     9961 ttaactgtga atacaggaca tgcatattta gcgtatgctg gtaaatttgc aggtaaagct
    10021 acagttttag atgcagttga agatagttca attgaagctg gcttacgccg tgttttagct
    10081 gaaactagtc aatatattac taatgaattt gattttactg aagcggaaca agctgcttat
    10141 gttgaaaaaa taatagatcg tttcaacaat tcttatttat ctgatgaagt aacacgtgtc
    10201 ggacgaggta cattacgtaa aattggccct aaagatagaa ttataaaacc attaacatat
    10261 ctttataata aagatttaga acgcactggt ttattaaata cagctgcatt gttattgaag
    10321 tatgatgata cagcagacca agaaactgtt gagaaaaata attacattaa agaacacggt
    10381 ttaaaagcgt ttttaagtga atatgctaaa gttgacgatg gcttagccga tgaaataatt
    10441 gaagcgtaca attcactttc ataatttatt gagctttgtt tgaaacaaga agtttccaac
    10501 gttattcgtt aacaatcagt aataatgtag tagttccctt gaattaacaa tattaaattt
    10561 ctgaacataa aaaatactcc cttcaacata gacacttaac ttgtgttatg tatgaaagga
    10621 gtatttttgc gttaataatt tgttttattt tcgagccaca gccacctatt caatggctat
    10681 tggtcattac taaaacaaat tcatattaac tgttagactt ggttacttag taaggaatat
    10741 ttccctatga aataactaga tgttcacatt cttgaataaa ttttattctt cagtttgttg
    10801 gtctttctta gtgaatcttc taattaagaa tgccatacct gcacctagag ctaattcagc
    10861 atatggtaaa tcgtcattat gtgacatacc agtatctggt aaagttttag cttgttgttt
    10921 agctttatta acttttcctt gttgagctga ttttgtctta gcttggtggt cgtcagtgtt
    10981 agttacatta agcatatctt gattagcact attgcttcca tttgaaactg tagctggaga
    11041 tgcattggca ccgtcgtttt gcgtagcttt attgtttgca gctgaaccaa ctgatttttg
    11101 cgtatcatta gtatctgctg ttgccgtatc atctttttgg ctaacattag ttgaagtcat
    11161 tttttctttt gcttcagaag atgcagatgt tgatggttta ttcgaaactt cagtatcagc
    11221 tttgcttggc gatttatctg cttcgttaga tgcaacgtta gtttcagact taagttgtcc
    11281 tgcatcagtt tgatttgtcg tactttcttc tttatctttt gatgtattag aaggtacatt
    11341 tggttctgtt atgtctgctg aaggcaatgt ttcagttgtt gattcaacca tactttgatt
    11401 tgttgaatca ctaccatctt tttctgcctt agctttattt tcagattttg gttgtgcaac
    11461 cttgtcatta gttgattgag attcagcact attatttact tcagcatttt gttttgaatc
    11521 atttacagat gcattatctt tgctatcagc agatgatgct gcttctgtgc tcgcagttgt
    11581 tggagccgtt gctgttgatc ctgttggtgc attctcgttt gttgctgtag ttgtactatt
    11641 gttatttgtt gtgctttctg ctggcgttgc attatcagtt tctgttacag gtttatcagt
    11701 tgtgccgtta ttagttgatt ctacttctgg tttactagtt acatcgttat ccattgtcgg
    11761 actgtttgtt gatgcatcta cactagaatt gttattagct tgcggtttat catttgcatc
    11821 atcagttgct gatgttgctg ttgtttcacc tgttgccgca tcactattat ttggtgttgt
    11881 cggagaagcg tctgctttgc cattagctgt cgtctcagat acgttaggtt gtccagtatt
    11941 ttctggtgtt gcattagcat ttgaatttgc tgttgcatca ttattatcta taccattatt
    12001 agtatcatta gcatctggat cattctgagg cacaatcgct tcaattgcag gtatcgttac
    12061 attttgtaat tcagcaactt ctgcatttgt ttgtgtttta tctaatttat cagcaaatct
    12121 gtcaaaatat ctacctaaat ccgtacgtgc aatttctttc gccgatgcat ctgcatctgc
    12181 atttttaatt atttctattt gcttgttaac cacttctctg attgcttcca aagcattttt
    12241 cttaacttca ggattaatac gttgtgcttt aagttgttca agcgcactat ttttgacagt
    12301 agcgatttct gcatttgtag tttgatcaga aatatcttca gttgcttttg ataaaatgtc
    12361 ttctaaagca ttcgtaaacg cttctttttc ttcagttgta gcatcagcgt tgacatttac
    12421 acctgcttca atctggtcta gtgcagtttc taattcttcg atagcttttt gtttttctgt
    12481 tgagtcgatt tgaatgttat caaatgcttc aagtccttga gctttcgctt tttcaacttc
    12541 agcagttgtt gttgcatcag taataccttg tttagcttga tctgtaattt gtttaatcat
    12601 tgctaatgct tcagtttttt cttcagcagt taactggtca ctttgatcaa tagattcttt
    12661 cgtatcttct gctttaactt caatagcttg gttcgcttta ggtttaacag tagcatctac
    12721 ttgaatagca tcaattgctg ctttaccttg tgttaatgca tcatcaacgt caccattatc
    12781 cacaccatta ttaatgcttt ctaatgcagt ttgaacattt tggtcaactt gcttaattgc
    12841 ttgttgcttt tcatcttgtg ttgcattagt gtcagctgaa atattatttt tcttctgatc
    12901 tgcataagca tataaatctg ttgtagctga ttctttttta cctgttggaa ttgtgtaatc
    12961 gttaatatta tctaagtcat tatgaatttg aacttcaatg tcatctttag aagtagcttg
    13021 attaacattt tgatccgcag tttgttttaa ttcagcaagt ttttgtttcg cttcagcaat
    13081 ttcacttgaa gtcgatgcgt tagagttatc cgcttcgttt actttagcat tatatgcatc
    13141 ttcaatttta gctaaagcat cttttttgta ctcactaaat gttttaactg cattaatttt
    13201 agcttttcct tctttaactg cattatcaac atattcattt gttgatgatt gatcgacatt
    13261 tgttttcgct tgatttaatt cagtatcaac ttcttgtttt gcatcattaa tttcttgttg
    13321 tgatgcattt ggtgtttgtt ctatttgtgt tttcttatca gctgcagctt gatctaattc
    13381 ttttttacct gctggtttct taacaggatt tgcatgaagt tgttgaactt tttgtactgc
    13441 tgtatcttta gcagtagtta catcacctgt agtagttgct gcattaatat tatttaaacc
    13501 ttcttcatat gctgctctaa ctggtccaat atcgttacct ttttcttcat tagtagtctc
    13561 attattatta agtatttcag ttattttatt ttgcatttca gttagcaatt ccgctcttgc
    13621 attcgtttta acatctgttg atgcttgaat tgggtcaatt gcttgaattg cattatcttt
    13681 tgcagtgttt acatcatcga ttgactgtgc attttcaata ttttgattac cttgtgttaa
    13741 ttgtgcgtct acttgttgat ttgcttgttc tttttcttca gtagtcgcat ctgcagtttg
    13801 tgcaataagc gctttttgtt cgtttgcttt tgttgctaat tcatctttcg caacatcttt
    13861 aattgttgta tctgcagtaa taccttgaat atcagcaact gcttgatctt taatttgcgt
    13921 aacatcatta gttgtttgtg catttaagat atcttgatac gctttttctt tagcttttaa
    13981 aactaaatct tttgctgcat ttttctcttc agttgtagca ccagttgtat tatcaattgc
    14041 ttgattttga gttgtcacag cttgatcaac atcattttta gcatttgatt taaccgctgt
    14101 tgctggttgc gtgctttgaa ttgaattctt tccagcgtct ttcgcctgat ctacaccatt
    14161 atcatcagtt gcagctgtaa tattattttt cgcgtctgta actgctgttg ctaattgttg
    14221 aatagctgct tctttttctt ctgttgtagc gttctgatca ttattgataa catttgtttg
    14281 cgttgcttgt aattgatcaa tttcatcttt agccgcttgt ttcttcacaa cttttggtgt
    14341 taccgcatta atcgctgctt ctgcatttgc tttagcttca tcaacttgtg cgttagtagt
    14401 tgctgctgaa atggcttgat ttgctttacc attttcagta tttgcttcag catcagctgc
    14461 ttgtttttct tcatctgttg catctggcgt agcttgaatc tcttgcaatt tgttatttaa
    14521 aattgctgtg atttcattac gtgcagttgc ttttttatta actgttggtg ttacttgatc
    14581 aatactattt tcacctgtcg ttttcgcttg gtctacatca ttttgactat tagcagcttc
    14641 aatgttgcta tttgcttgtg tcacagcatt atctacgtcc gcattagccg ctgcaatttc
    14701 ttcagcagta atgtcttgcg tttgagcgat tgctgtttta cgttcattcg ctttcgtagc
    14761 aattgcttct ttcgcattat ctttagttgt tgttgctggc tgaatcgctt caattttagc
    14821 aattgctgct tttttagccg cttcaacttc cgcatttgta tgtgctgcat ctattgcggc
    14881 atcagctgtt gttttttcag tttgaacttg ttatttagca gctgcttttt cttcagttgt
    14941 tgagccgtta tttccatcaa ttgctgtttc ttgagcttgt actttatctg caattgcttg
    15001 ttttgctgct ggtttaacat ttgcatcagg tgtaatggct gcgattgtag cttcatttgt
    15061 agtttttgca ttatccacat cattgtttgc tgcagcatta tctatatcag cgtttgcagt
    15121 aactactgct tgatccactt tgtctttcgc tgcttgttgt tcttcagtag tcgaatcatt
    15181 cattgcttca attgctgttt tacgttcact tgctttttga gcgatttccg cttttgcatc
    15241 cgatttctta gttgtggcag cttgaacttg attaattgca gcaatactat tgtctttagc
    15301 tgttgttaca tcactgtttg tatttgcagc atcaagattt gttcttgctt cttgcttttt
    15361 agtatctaat tctgtatatg cagcttgttt ttcttctgta gttgaagcat tgctattttg
    15421 aatttcttgt ttacgtgtat tatatgcgtt ttctacttcc gtatcagctg caggtttaac
    15481 ttttgcttgt gtttgaattg cattgatttt atctaatact tttgattttg tatcagcaac
    15541 ttcctgtttt gatttaacaa cttggatgtc atgtaaacct tgcttttgag ctgcatctac
    15601 tgctgcatca gcttctgcta cttcttcatt tgttgcattt gaaactgtag cattttgagc
    15661 ttttctagct gttgcagctt gtttaacttc attataggca tccatttttg tttgcgtaga
    15721 gtcagtaata ttttcaattt ttgagatttc ttcgttttta actctttcta aatcttgtgc
    15781 agtcgttgtc gcttcaattg ctttaacacc agaaacttta gctgcattaa tacgttcaat
    15841 agcttccgct acttcttcat ttgttgtatc aggatttaaa ggtgcttgat caatttgtgc
    15901 ttgaacaact tcgtcaaatt cttcaagagc tgctgcttta gctgttgtag caggtgtagt
    15961 ttgattaata tcattgattg cttttgtttt aatggcttct acttgtgcat ttgttgttgc
    16021 tgcatcaata tctttaattg cctttgtttc aattttacca attttatcat ttgctacatc
    16081 tttttcatct tgtaatgatg catttgactt tttaatttgt tgtttacgag ttgtaactgc
    16141 ttggataata tcttgtttcg cttgaggttt aactgttggt gtaatcacat cttgttctaa
    16201 cactgcgata ccattatctt tttcagttgt gacaccttgt gctgtagttt gtttattaat
    16261 ttcagcgatt gcattatttt tatcattgtt aattttagtt acaagtgctg caacttcatc
    16321 ttgcgtaact tttttacttt gttgtgctgc tgtaaccttt tcttgagctt tagtatctaa
    16381 ttcagcaatt gctgcttgat tatcaattaa tgcagcttgt aatttagtta ctaaaccatc
    16441 aatatccgct tgagatgcac gatttgcagt tttaacatga ttcgcatctt catttaaaat
    16501 agtatctgct tgttgtttaa gtttattgta ttctgcaatt gatgctgttg tgtaatgact
    16561 attatcaact tgtgagttta cttgttgttg caacgcatct ttgttcattt caaccgctac
    16621 tgaaaatgga tctgcagtta gtgtaacttc tggttgcgca ttattaatta caacatctga
    16681 agcagtacga tatgttaatt tttcattaaa atcaatattt ttaggtgtat cgatattcgc
    16741 aacattaact ttatatgata attttaaaga tttatctggg aataaaactt ctttagtgtg
    16801 tgtaccacgt gccgttgtca caccttggct tgtaaatgta actttatttg cattttgatc
    16861 ataattaaca gtcatatttt tcaatactgt actgtcttca ttaccattag ggaatgttgt
    16921 agttaatgaa ttattaacgt aagttacacc ttgtggtaat gttacttcat atttaaattg
    16981 atctgctttt aatgaagcac caaaattacc attgttaccg atttcagtat taatagtata
    17041 ttctttattg ttagttgctt tcggtgctaa atctctattt ttgacatata aatgtgatcc
    17101 tgagaataga cctacattat caatgaatga atagtattta taaccatctt tatttgttgt
    17161 aattcttgaa gcatcagcaa ctgctgtatt gtcaggaata aattgtaaat ctaaacgatc
    17221 agcatcagtt ggtactttaa ataaatgtgc agtaccagtc ttagcaacat ttacagttgc
    17281 taattcagta tttttcttag catctttaat aactaaattt gttgcacctt gcttactatt
    17341 cgtttgcata gtagtaaagt taataattaa ttctgaatct ggttttacat ttacagtttt
    17401 tgaaataccg ttaaagttac catgatctgt agaatcattt gcattcacac gacctaatgc
    17461 agccacgttt cctttagctt gatagttttg agggttattc ttatcaaaca tatcgcttcg
    17521 tcttaattct gagttaacga aaccaatctt accgttgtta attaatgaat aaccatttac
    17581 tttatctgta acagttacag ttggatcttg tctattctca tctgttgata tggcaggatc
    17641 atcaaatgtt aatgtcgtat taatactgcc ttcaccagta ttgctagcat ttggatcttg
    17701 agtttgtgcg tttgctgcta caggtgctgc tggttgcgct gctgctggag cattcgctgg
    17761 ctgtgtttga tttgccggtg ttgcattatt attaggtgtt gcttggttat ttccttgacc
    17821 tgcttggttt gccggtgttg cttgatttcc aggttgtgct tgtgcagcgt tattcggatc
    17881 agcttgatta ccttgtccag ctggttgtgt atttggttgt gctgctcctc ctgctggatt
    17941 agcctgtcca ccttggtttg ctggttgtac tgctggttgt ccttggttgg caggtgcagc
    18001 tggctgtgct gtaggattag cttgagcacc agcatttgcg ttaggctgtg tattggcatc
    18061 agctggttgt gctggttgat tttgtgcagg ctgattttgc tctgctgcag acgctgttgt
    18121 cgggttagta gatataaaag taacagtggc aattaaagct gaaaaaatac cgacattaaa
    18181 ttttctgata ctaaattttt gttgtctgaa taaattcatt aagtcatcct cctggttgat
    18241 tattctcgct gttaaatgat ttcacttaat caactgttaa gataagtagt agcatctgcg
    18301 ttaaaaacac aaagcaactc tatctaatta aaattaattt tatcatcatt atatattgag
    18361 taccagtgta ttttatatta catattgatt actttgtttt tattttgttt atatcatttt
    18421 acgtttgtac tataaattat ttctacaaac acaaaaaacc gatgcatacg catcggctca
    18481 tttgtaatac agtatttatt tatctaatcc cattttatct tgaaccacat cagctatttg
    18541 ttgtgcaaat ctttcagcat cttcatcagt tgctgcttca accatgacac gaactaatgg
    18601 ttctgttcca gaaggtctta ctaaaattcg accttctcca ttcatttcta cttctacttt
    18661 agtcataact tctttaacgt caacattttc ttcaacacga tatttatctg ttacgcgtac
    18721 gttaattaat gattgtggat attttttcat ttgtccagct aattcactta gtgatttacc
    18781 agtcattttt attacagaag ctaattgaat accagttaat aaaccatcac cagttgtatt
    18841 gtaatccatc ataacgatat gtccagattg ttctccacct aagttataat taccgcgacg
    18901 catttcttct actacatatc tgtcgccaac tttagtttta ttagatttaa ttccttcttg
    18961 ttcaagcgct ttgtaaaaac ctaaattact cataacagta gaaacaatca tgtcattatt
    19021 caattcttga tttttatgca tttcttgacc aataataaac ataatttggt caccgtcaac
    19081 gatttgacca ttctcatcta ctgctatgat tctgtctcca tcgccgtcaa atgctaaccc
    19141 aaaatcactt tcagtttcaa ctactttttc agctaatttt tcaggatgtg tagagccaca
    19201 tttctcattg atattatatc catcaggact acatccaatt gtttcagtat ctgcttctaa
    19261 gtcaccaaat aagaatggcg ctagtgatga tgttgaacca tttgcaccat ctaaagcaat
    19321 tttcaaacct tcaaagttaa catctactgt tgattttaaa tagctcaaat atttttgtgc
    19381 cccttcaaag taatctgaat aatgtacaat atcattgcca actggtcttg gtaattctgg
    19441 gttttcttga tccaataatg cttcaatttc attttcttgt tcatctgata gtttaaaacc
    19501 atctgatcca aagaatttaa taccattatc tgcaactgga ttatgagagg ctgaaatcat
    19561 tacacctaac tctgcaccca tatcgcgtgt taaatatgca acacctggtg ttgaaataat
    19621 acctaatcgc atcacttctg caccaattga aatcaaacca gctattaatg ctgattctaa
    19681 catttcacct gaaactctag tatcgcgacc tacaagtaca cgtgggtgtt tttcaccttt
    19741 attatgtgct agaacatagc caccgtatct tcctaattta aatgccaatt caggtgttag
    19801 ttcttggttt gcgacacctc ttactccgtc tgtaccaaaa tattttccca ttgtttactc
    19861 tcctttaatt tagctattta ttttacattt atataagcct tcgtttcact tggttgtgct
    19921 ttagtgacat gttctggtaa attgattttt acagtctttt cagttgattc tgaaatacca
    19981 tctaaatcta cttctgcatc aacttcgctt atattttgta agtcatctcg actaccgaag
    20041 atttcaattt ctttatcttc taaatcaatc gaacttaact ctttatcatc tgctaaacta
    20101 cctttctgtt taacatttac tttaaccttt ttgctaaaag gctctacttt aacttgtaaa
    20161 ttcacttcat taggttgaat cgatacattt aatttattca gttttttatc aaaagccgtt
    20221 acttctgcga catcttttgt gtcaccatta atctttttat tagttttaaa agtggctttt
    20281 aaataagcga tatcattcaa ttgttcttct ccacctgtta ctttaactgt ttgtggtgaa
    20341 acttcttgct ttgtaatttt ataaagtgga tcaatatcac tctgacttac atcaggttga
    20401 actgtcatct ttttagttac tttgttttca agcgtaatat ttgctaattt aggttttaca
    20461 gaataatgaa tgtcatcagc taacccttta acttgatact tctcttgata ttttccagct
    20521 ttagcatttg ataaatcaat cactactctt aaatcttctg gattttcaat ttttattatc
    20581 tttgattgtg gtcctgaaat agtcacatta actgtttcag gcgcttttgt taaatgcaaa
    20641 tctttagtgt tataaagaat ttcaacgggt acatcttgaa tcgttttact agacttttga
    20701 ccaagattac cagtgttaaa gatatttcca aaaacattgt taacagataa aaagaaaaac
    20761 aatgccaaaa gaaaggcaat aaatctcaag ccccatttac tttctagcat attatttcac
    20821 acctttcttt tgaaagcgtg tgccaaacca atgttcagca agcaactctt caaaaatttc
    20881 gtttgaaatg tctcgtcgta attttccatc aaatgttacc gaaatatcac cagtttcttc
    20941 agatacaata acggtaaatg catcagatac ttctgaaata ccaaccgcag ctctatgtct
    21001 tgtacccaaa cttttagata tcttaggact atcagacaat ggcaaataac ttgctgctgc
    21061 tgcaatcttc gtgccttgaa taatcattgc accatcatgt aaaggtgtgt taggtataaa
    21121 gacattaatt aaaagttctt gcgaaatatt tgaatccatt gcaatacctg tttcaatata
    21181 atcttgaaga cctgtttctt tttcaaagac aattaatgca cctatacgtc ttttagccat
    21241 atattgcaca gcctttgaaa ccgattgaat caatttctct tcatctttac tatacgtatt
    21301 agaagtatag cgttttaaaa agctacctct accaagttgt tctaacgcac gtctaatttc
    21361 tggttggaat attactatta aagctaatac cccccattga ataacgatat cgaataattt
    21421 agatgttgca gtcaagttca atatcatact tatctgctga ccaataacaa ttactaatat
    21481 ccctttaagt aattgtatcg ctttagttcc cttaaagacc gtgatgagaa gataaagtac
    21541 ataccaaact atcagtaaat caaggatact cgttacaatt tttaacgtac tgaggttttg
    21601 aaaaaagttg gaaaaatcca taacatctcc tccgggtaat atttttccat aatacccatt
    21661 ataccaatca tttacatcac tgtcatacga acatatattt aaatagaaaa aatttatttt
    21721 aaagattata actactctta atcattttag tgaattaaaa aaagtagt
//
LOCUS       DAMQWL010000035        21446 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.035, whole genome shotgun sequence.
ACCESSION   DAMQWL010000035 DAMQWL010000000
VERSION     DAMQWL010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 21446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21446
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.035"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1675
                     /locus_tag="PF788_001199"
     CDS             <1..1675
                     /locus_tag="PF788_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="monovalent cation:proton antiporter family
                     protein"
                     /protein_id="HDG6303467.1"
                     /translation="LSTLGFIFLMFLSGLEIDFKAFKKDKRARQGQNDDESSIPGHLN
                     LALTVFAFIMIISILLAYVFKWLGLVDDVLLMVIIISTISLGVVVPTLKEMNIMRTTI
                     GQFILLVAVLADLVTMILLTVYGAINGQGGSTIWLIGILVVFTAISYILGVQFKRMSF
                     LQKLMDGTTQIGIRAVFALIILLVALAEGVGAENILGAFLAGVVVSLLNPDEEMVEKL
                     DSFGYGFFIPIFFIMVGVDLNIPSLIKEPKLLIIIPILIVAFIISKLIPVMFIRRWFD
                     MKTTIASAFLLTSTLSLVIAAAKISERLNAISAETSGILILSAVITCVFVPIIFKKLF
                     PVPDEFNRKIEVSLIGKNQLTIPIAQNLTSQLYDVTLYYRKDLSDRRQLSDDITMIEI
                     ADYEQDVLERLGLFDRDIVVCATNDDDINRKVAKLAKAHQVERVICRLESTTDDTELV
                     DSGIEIFSSYLSNKILLKGLIETPNMLNLLSNVETSLYEIQMLNYKYENIQLRNFPFG
                     GDIIFVRIIRNNESIVPHGDTQLRYGDRLIVTGAKEYVDELKQELEFYF"
     gene            1953..2723
                     /gene="fabI"
                     /locus_tag="PF788_001200"
     CDS             1953..2723
                     /gene="fabI"
                     /locus_tag="PF788_001200"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HDG6303468.1"
                     /translation="MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERS
                     RKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDL
                     RGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVM
                     GVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLK
                     RNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAIK"
     gene            complement(2918..4003)
                     /locus_tag="PF788_001201"
     CDS             complement(2918..4003)
                     /locus_tag="PF788_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDG6303469.1"
                     /translation="MLNKVWFRTGIALIMLFILIKLFMEVHEVFTPIATIIGSVFLPF
                     LISGFLFYICLPFQNLLEKVGFPRWASITTIMLALFAIIGLIVAFVAPIIISNINNLI
                     SQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYITSLI
                     STIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFTLKSYIQGQV
                     TVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAILGIIDSPTT
                     FIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVLIAVPLY
                     AVLKTVVSNIFKYRQRIIDKANSNVKD"
     gene            4345..5913
                     /locus_tag="PF788_001202"
     CDS             4345..5913
                     /locus_tag="PF788_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDG6303470.1"
                     /translation="MIEKLVTFLNEVVWSKPLVYGLLITGVLFTLRMRFFQVRHFKEM
                     IRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWITAFLG
                     ASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLL
                     PGVQSNAIASSMHNAIHVPQWLMGGIVVVILGLIIFGGVRSIANVATAVVPFMAIIYI
                     LMAVIIICINIQEVPALFALIFKSAFGLQSAFGGIVGAMIEIGVKRGLYSNEAGQGTG
                     PHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTYNVTDGTVNANGTPH
                     LIKDGGIYVENATGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFF
                     AFTTILSYYYITETNVAYLTRNQNNQVSSIFINIARVIILFATFYGAVKTADVAWAFG
                     DLGVGLMAWLNIIAIWILHKPAVNALKDYEIQKKRLGNGYNAVYQPDPNKLPNAVFWL
                     KTYPERLKQARAKK"
     gene            6055..6813
                     /locus_tag="PF788_001203"
     CDS             6055..6813
                     /locus_tag="PF788_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDG6303471.1"
                     /translation="MSEFKTGKINKHVLYSNILNRDVTLSIYLPESYNQLVKYNVILC
                     FDGLDFLRFGRIQRTYESLIKEARIDDAIIVGFHYEDVDKRREEFHPQGSRSHLTIQS
                     VGKEILPFIDSTFSTLKVGNARLLVGDSLAGSIALLTALTYPTIFSRVAMLSPHSDEK
                     VLDKLNQCANKEQLTIWHVIGLDEKDFTLPTNGKRADFLTPNRELAEQIKKYNITYYY
                     DEFDGGHQWKDWKPLLSDILLYFLSKNTDDQLYE"
     gene            7007..7516
                     /locus_tag="PF788_001204"
     CDS             7007..7516
                     /locus_tag="PF788_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjcG family protein"
                     /protein_id="HDG6303472.1"
                     /translation="MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIK
                     DGDLDSVIEQVRARINGIPAVEVHATKASSFKPTNNVIYFKVAKTDDLEELFNRFNGE
                     DFYGEAEHVFVPHFTIAQGLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKW
                     KVIETFKLA"
     gene            complement(7629..8819)
                     /locus_tag="PF788_001205"
     CDS             complement(7629..8819)
                     /locus_tag="PF788_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001154225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6303473.1"
                     /translation="MQDSSLNNYANHKNFILMLIILFLMEFARGMYILSYINFLPTVT
                     SIAVAITSLAFSIHFIADASTNFVIGFLLKKFGTKIVLTTGFILAFTSLFLVIWFPAS
                     PFVIIFSAMMLGIAVSPIWVIMLSSVEEDKRGKQMGYVYFSWLLGLLVGMVFMNLLIK
                     VHPTRFAFMMSLVVLIAWILYYFVDVKLTNYNTRPVKAQLRQIVDVTKRHLLLFPGIL
                     LQGAAIAALVPILPTYATKVINVSTIEYTVAIIIGGIGCAVSMLFLSKLIDNRSRNFM
                     YGVILSGFILYMILIFTLSMIVNIHILWIIALAIGLMYGILLPAWNTFMARFIKSDEQ
                     EETWGVFNSIQGFGSMIGPLFGGLITQFTNNLNNTFYFSALIFLVLAVFYGSYFIVNR
                     EKAK"
     gene            complement(8797..9972)
                     /locus_tag="PF788_001206"
     CDS             complement(8797..9972)
                     /locus_tag="PF788_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diglucosyl diacylglycerol synthase"
                     /protein_id="HDG6303474.1"
                     /translation="MVTQNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHD
                     LFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPDKLDKCFYKYYGLNKLINLLIK
                     EKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYRLHKNWITPYSTRYYVATKETKQ
                     DFIDVGIDPSTVKVTGIPIDNKFETPINQKQWLIDNNLDPDKQTILMSAGAFGVSKGF
                     DTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQL
                     MITKPGGITITEGFARCIPMIFLNPAPGQELENALYFEEKGFGKIADTPEEAIKIVAS
                     LTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGHSSQPQEIYGKVPLYARFFVK"
     gene            10405..11886
                     /locus_tag="PF788_001207"
     CDS             10405..11886
                     /locus_tag="PF788_001207"
                     /EC_number="6.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-
                     lysine ligase"
                     /protein_id="HDG6303475.1"
                     /translation="MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVG
                     YTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVVVPDTLRVASILAHTLYDYPSHQ
                     LVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLT
                     KKIKEAVDAGAESMTLEVSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHA
                     KSLLFSQLGEDLSKEKYVVLNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESL
                     QGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEG
                     RLEVLDPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMG
                     RVACRADYVIFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGD
                     TVVLASKGREPYQIMPGHIKVPHRDDLIGLEAAYKKFGGGPVD"
     gene            11870..12130
                     /locus_tag="PF788_001208"
     CDS             11870..12130
                     /locus_tag="PF788_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YueH family protein"
                     /protein_id="HDG6303476.1"
                     /translation="MALLINKRFIDEGKTIDVYLFEALNNQIIIAIPDWFWSYQMAMT
                     LDEETCFEAILMQLFVFKEEEEAESIASQLTDWIETYKKEKD"
     gene            12130..13692
                     /locus_tag="PF788_001209"
     CDS             12130..13692
                     /locus_tag="PF788_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDG6303477.1"
                     /translation="MNLKQEVESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVK
                     GKKTGKFATSDWMKVEQERGISVTSSVMQFDYDDYKINILDTPGHEDFSEDTYRTLMA
                     VDSAVMVIDCAKGIEPQTLKLFKVCKMRGIPIFTFINKLDRVGKEPFELLDEIEETLN
                     IETYPMNWPIGMGQSFFGIIDRKSKTIEPFRDEENILHLNDDFELEEDHAITNDSDFE
                     QAIEELMLVEEAGEAFDNDALLSGDLTPVFFGSALANFGVQNFLNAYVDFAPMPNARQ
                     TKEDVEVSPFDDSFSGFIFKIQANMDPKHRDRIAFMRVVSGAFERGMDVTLQRTNKKQ
                     KITRSTSFMADDKETVNHAVAGDIIGLYDTGNYQIGDTLVGGKQTYSFQDLPQFTPEI
                     FMKVSAKNVMKQKHFHKGIEQLVQEGAIQYYKTLHTNQIILGAVGQLQFEVFEHRMKN
                     EYNVDVVMEPVGRKIARWIENEDQITDKMNTSRSILVKDRYDDLVFLFENEFATRWFE
                     EKFPEIKLYSLL"
     gene            13994..14797
                     /locus_tag="PF788_001210"
     CDS             13994..14797
                     /locus_tag="PF788_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDG6303478.1"
                     /translation="MLMDPSLILPYLWVLVVLVFLEGLLAADNAIVMAVMVKHLPPEQ
                     RKKALFYGLLGAFVFRFLALFLISIIANFWFIQAAGAVYLIYMSIKNLWQFFKHPEIE
                     SPEAGDDHHYDESGEEIKASNKSFWGTVLKIEFADIAFAIDSMLAALAIAVTLPKVGI
                     HFGGMDLGQFVVMFLGGMIGVILMRYAATWFVELLNKYPGLEGAAFAIVGWVGVKLVV
                     MVLAHPDIAVLPEHFPHGVLWQSIFWTVLIGLVIIGWLGSVVKNKKSHK"
     gene            15016..17340
                     /locus_tag="PF788_001211"
     CDS             15016..17340
                     /locus_tag="PF788_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDG6303479.1"
                     /translation="MEWTLVDIGKKHVIPKSQYRRKRREFFHNEDREENLNQHQDKQN
                     IDNTTSKKADKQIHKDSIDKHERFKNSLSSHLEQRNRDVNENKAEESKSNQDSKSAYN
                     RDHYLTDDVSKKQNSLDSVDQDTVKSKYYEQNSEATLSTKSTDKVESTEMRKLSSDKN
                     KVGHEEQHVLSKPSEHDKETRIDSESSRTDSDSSMQTEKIKKDSSDGNKSSNLKSEVI
                     SDKSNTVPKLSESDDEVNNQKPLTLPEEQKLKRQQSQNEQTKTYTYGDSEQNDKSNHE
                     NDLSHHIPSISDDKDNVMRENHIVDDNPDNDINTPSLSKTDDDRKLDEKIHVEDKHKQ
                     NADSSETVGYQSQSTASHRSTEKRNISINDHDKLNGQKTNTKTSANNNQKKATSKLNK
                     GRATNNNYSDILKKFWMMYWPKLVILMGIIILIVILNAIFNNVNKNDRMNDNNDADAQ
                     KYTTTMKNANNTVKSVVTVENETSKDSSLPKDKASQDEVGSGVVYKKSGDTLYIVTNA
                     HVVGDKENQKITFSNNKSVVGKVLGKDKWSDLAVVKATSSDSSVKEIAIGDSNNLVLG
                     EPILVVGNPLGVDFKGTVTEGIISGLNRNVPIDFDKDNKYDMLMKAFQIDASVNPGNS
                     GGAVVNREGKLIGVVAAKISMPNVENMSFAIPVNEVQKIVKDLETKGKIDYPDVGVKM
                     KNIASLNSFERQAVKLPGKVKNGVVVDQVDNNGLADQSGLKKGDVITELDGKLLEDDL
                     RFRQIIFSHKDDLKSITAKIYRDGKEKEINIKLK"
     gene            17357..18715
                     /locus_tag="PF788_001212"
     CDS             17357..18715
                     /locus_tag="PF788_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDG6303480.1"
                     /translation="MSIFSQFLKRSSPQQGIVLYYIVAIVIAFLLLNLPYVHKPGVEV
                     NPIDTLFVAVSGISVTGLSPISIVDTYSTFGQLIILVILNIGGIGVMAIGTMLWVVLG
                     KHIGIRERQLIMLDNNKNTMSGTVKLIIDIVKSIFVIELVGAMLLAFYFYRDNPDLKY
                     AIMQGVFVSISATTNGGLDITGKSLIPYAHDYFVQAIVIFLIILGSIGFPVLLEVKAY
                     IQNRVTNFRFSLFTKITTSTYLFLFIVGVLAILLFEHNHAFKGLSWHQSLFYSLFQSA
                     TTRSAGLQTIDVTTLSDPTNIIMGILMFIGSSPSSVGGGIRTTTFAILILFLINFSNN
                     ADKTSIKVYNREVHIMDIQRSFAVFTMATILTFLGMLIISATENGKLTFLQVFFEVMS
                     AFGTCGLSLGVTSDISDISKVVLMILMFIGRVGLISFIIMIAGRREPDKFHYPKERIQ
                     IG"
     gene            18854..20365
                     /locus_tag="PF788_001213"
     CDS             18854..20365
                     /locus_tag="PF788_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HDG6303481.1"
                     /translation="MEKNENINVEILTTSDMHSHFLNGDYGSNIYRAGTYVNQVRAQN
                     HRVILLDSGGSLAGSLAAYYYAIVAPYKRHPMIKLMNRMHYDASGVSPSEFKFGLSFL
                     TRSIALARFPWLSANIEYNVTKEPYFSTPYCIKHFGDLKIAIVGVTADGLMENEYSEM
                     EQDVSIEKTLVASKRWIRYIHEVEEPDFLIVIYHGGLNKISNSTKNKKASSNEAEKLM
                     EELGVIDLMITAHQHQTIVGQDHETYYVQAGQDAKELVHLSINFKKRTTTYDVESIDS
                     KVIDLNEYEEDQELLDLTFYDRKAVAYWSQEIISDKGLMLSVNGLQDLVCQTHPFSQL
                     LHDAIHLAFDNDITCVHVPMNGEKGLSGQIRNEDLYHAYPYPDKPMDMTISGQNIKDI
                     LEYSYSHLDFVNEQLSLTIIDETLCTMWQGFNYEIDMNQEPGQRVMLDQIDLTKSYRV
                     TMTDYCYRNYKNYLKNAIIHESYDETMSTLIAEKLRDPNYRISCSDNFIVKNR"
     gene            complement(20545..20633)
                     /locus_tag="PF788_001214"
     tRNA            complement(20545..20633)
                     /locus_tag="PF788_001214"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(20596..20598),aa:Ser,seq:gct)
     gene            complement(20636..20710)
                     /locus_tag="PF788_001215"
     tRNA            complement(20636..20710)
                     /locus_tag="PF788_001215"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(20676..20678),aa:Asn,seq:gtt)
     gene            complement(20852..21421)
                     /locus_tag="PF788_001216"
     CDS             complement(20852..21421)
                     /locus_tag="PF788_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001619687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComK"
                     /protein_id="HDG6303482.1"
                     /translation="MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFK
                     VQKIIERSCKFYGNTYLGKKAETNRITGISSKPPILLTPLFPTYFFPTHSDRQNENIW
                     LNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
                     KNPDQPIDYNKATLNVFEALTRYSLFEDK"
BASE COUNT         7495 a         2978 c         3929 g         7044 t
ORIGIN      
        1 tttatcaacg ttaggcttta tctttttaat gtttttaagt ggtttagaaa ttgattttaa
       61 agcttttaaa aaagataaac gcgcacgtca aggacaaaat gatgatgaat cctcaattcc
      121 agggcatctt aatctagcgt taactgtatt tgcatttatt atgattattt cgattctttt
      181 agcgtatgta tttaaatggc ttggattagt ggatgatgtg ttattaatgg tcattatcat
      241 ttcaactatt tccttaggcg tagttgttcc aactttaaaa gaaatgaata ttatgagaac
      301 aactataggg caatttatcc tattagtagc agtacttgcg gacttagtaa ctatgatttt
      361 attaacggtc tatggcgcaa tcaatggtca aggcggcagt acaatatggt taataggtat
      421 attagttgtt ttcacagcaa tttcatatat tttaggtgtt caatttaaaa gaatgtcatt
      481 tttacaaaaa ttgatggatg gtacgacgca aatcggtatt cgtgcggtat ttgcattaat
      541 aatattatta gtagccctag cagagggagt tggcgcagaa aatatattag gtgcattctt
      601 agcaggtgtc gttgtttcat tattaaatcc agatgaagaa atggttgaaa agttagactc
      661 atttggttat gggttcttta ttcctatttt ctttataatg gttggtgtag atttaaacat
      721 accttcatta attaaagaac cgaaattact aattatcata ccgattttaa tcgttgcatt
      781 tatcatttca aaattaattc cagtcatgtt tattcgacgt tggtttgata tgaaaacaac
      841 gattgcatca gcatttttat taacatcaac attatcgctc gtgatagctg cagccaaaat
      901 ttcagaaaga ttaaatgcta tttcagctga aacgtcaggt atattaattt taagcgcagt
      961 cattacatgt gtattcgttc cgattatttt caaaaaactg tttccagttc cagatgagtt
     1021 taaccgtaaa attgaagtta gtttaattgg taaaaatcaa ttaacgattc ctatagcgca
     1081 aaatttaaca tctcagttat atgacgtgac attatattat cgcaaagact tgagtgatcg
     1141 tcgtcaattg tcagatgata tcacgatgat agaaattgct gattatgaac aagatgtttt
     1201 agaacgacta ggtctgtttg accgagacat agttgtttgt gctacgaatg acgatgatat
     1261 taaccgaaaa gttgctaaat tagccaaagc acatcaagtt gagcgtgtca tttgcagact
     1321 tgaaagcaca acggacgata cagagttagt tgattcaggt attgaaattt tcagtagcta
     1381 cttaagtaat aaaatcttat taaaaggttt aattgaaaca cctaacatgt tgaatttatt
     1441 aagtaatgtt gaaacgtcac tatatgaaat tcaaatgtta aattataaat atgaaaatat
     1501 tcaattacgt aatttcccat tcggaggaga catcatcttc gtgcgtatta tccgtaataa
     1561 tgagtcgatt gttccgcatg gagatacaca attgcgatat ggagatcgct taattgttac
     1621 cggtgctaaa gaatacgttg atgaattgaa gcaagagtta gaattttatt tttaacaata
     1681 atgatattaa aatgcagacg tattttagta cgacgtaaaa ttaatgattt taaaatgcta
     1741 gtatgtatat gattttgata aataaatgct ttttacgtaa atcaagtttg atacagaaag
     1801 gactaaatca aacatttatc gttgtaatac gtttaaataa ctttattaaa aagtcataat
     1861 agtgttaaaa tgtattgacg aataaaaagt tagttaaaac tgggattaga tattctatcc
     1921 gttaaattaa ttattataag gagttatctt acatgttaaa tcttgaaaac aaaacatatg
     1981 tcatcatggg aatcgctaat aagcgtagta ttgcttttgg tgtcgctaaa gttttagatc
     2041 aattaggtgc taaattagta tttacttacc gtaaagaacg tagccgtaaa gagcttgaaa
     2101 aattattaga acaattaaat caaccagaag cgcacttata tcaaattgat gttcaaagcg
     2161 atgaagaggt tattaatggt tttgagcaaa ttggtaaaga tgttggcaat attgatggtg
     2221 tatatcattc aatcgcattt gctaatatgg aagacttacg cggacgcttt tctgaaactt
     2281 cacgtgaagg cttcttgtta gctcaagaca ttagttctta ctcattaaca attgtggctc
     2341 atgaagctaa aaaattaatg ccagaaggtg gtagcattgt tgcaacaaca tatttaggtg
     2401 gcgaattcgc agttcaaaac tataatgtga tgggtgttgc taaagcgagc ttagaagcaa
     2461 atgttaaata tttagcatta gacttaggtc cagataatat tcgcgttaat gcaatttcag
     2521 ctggtccaat ccgtacatta agtgcaaaag gtgtgggtgg tttcaataca attcttaaag
     2581 aaatcgaaga gcgtgcacct ttaaaacgta atgttgatca agtagaagta ggtaaaactg
     2641 cggcttactt attaagtgat ttatcaagtg gcgttacagg tgaaaatatt catgtagata
     2701 gcggattcca cgcaattaaa taatatcatt caacagcttt gttcacgtta ttatatatgt
     2761 gagcaaagct tttttgcttt tataataatc ggactgatgg aaaattattt gatatttcat
     2821 ttgactgatt ttttatgcac aaaaaaatcg cctcaaaagc tgtagtttca acttttgatg
     2881 cgatagtatc ttatattctt aaaagacatc cacagaatta gtccttaaca ttactgtttg
     2941 ctttatcaat aatgcgttgg cggtatttga aaatattact aacaaccgtt ttaagtacag
     3001 catataatgg cactgcaatc agaactaatg taaagccacc taaatctcct gctgctaaaa
     3061 taacaacgat aattgttaaa ggatggatac ttaaagattt acccattaca tttggtgtaa
     3121 tgatattacc ttcaagttga tgtgcaatta atgtaatgat acaaacccat ataaatgtag
     3181 taggactatc tataataccg agtattgctg caggtgcaaa tgataaccat gaacctaaga
     3241 aaggaattaa gtttgcgaca ccagcaaata gtactaataa aggaatatat ggtaagtcaa
     3301 taattgaata accgatatat aagaatatac ctaaaataac actgacagtt acttgacctt
     3361 gaatgtaaga ttttaatgta aagtttaaat cagttaataa atctacgaaa aatactttac
     3421 gttcaccttt gaaaaattta gcaacagctg ggataaattt ttcatggtct tttaacatat
     3481 aaattaagaa gaatggaacc ataatcaata agaagatggt tgaaattaat gatgtaatgt
     3541 actgtaatga attagataaa atattagtaa cgccatcacc cattgattta accatatttg
     3601 taattctact tgttacatct tcaggtaatt tatccatttg agctagtgcg aatttaataa
     3661 tttgctctgc ttctttttgt agggcaggtg tctgactaat taaattgttg atatttgaaa
     3721 tgatgattgg tgcaacaaac gcaacaatta agccgataat agcaaacaaa gctaacatga
     3781 ttgttgttat actagcccat cttggaaaac cgactttttc aagtaagttt tgaaaaggta
     3841 gacagatata aaataaaaaa ccactaatta aaaatggaag aaatacagaa ccgatgattg
     3901 tagctattgg agtaaatact tcgtgcactt ccataaatag tttgatgaga atgaacagca
     3961 taatcagagc gatgccagtt cggaaccaaa ccttgtttaa cataaacgat gttcctccta
     4021 tttttctaaa cttagttatt atttagtata tcctaaatag cagtgcttaa aaaggttaat
     4081 attttttaaa tatacttaaa ttaaccattc actttctatt ttaagatatt tactttcaat
     4141 agtttgtgag acttttcaat gactcgtaag tctgcaattg gatcaaacag caccagttta
     4201 tatgaataac ttattttaat attaaacgtg tttaaatagt gaaatgatca tattaatatt
     4261 tataagaata ttctgaaaaa tatattgaag tgtctcgtgc ttaatcgtat aatattttta
     4321 tgtttaaaca atagggggaa tcttatgatt gaaaaattag taaccttttt aaatgaggtt
     4381 gtttggagta agccattagt ttatggtttg ctaattactg gtgtgctatt tacattgcgt
     4441 atgcgatttt ttcaagttag acattttaaa gaaatgattc gattaatgtt tcaaggagag
     4501 aagtctccta atggtatttc aagttttcaa gcgatagcca tgtctttagc aggcagggtt
     4561 ggtacaggta atattgtcgg tgtatctact gcaatattta taggaggacc tggtgcagta
     4621 ttttggatgt ggattactgc gtttttaggt gcaagtagtg cttttattga atctacactt
     4681 ggtcaaatat tcaagagagt tgaaaataat gaataccgtg gtggaccagc gtattatatt
     4741 gaatatggta ttggtggtaa atttggtaaa atttacggaa ttatctttgc tattgttacg
     4801 attatctcag taggtctatt gcttcctggt gtgcaatcta acgctatagc aagttctatg
     4861 cataatgcga ttcatgttcc acaatggtta atgggtggta ttgttgtagt tattttggga
     4921 ttaattattt ttggtggtgt acgtagtatt gccaatgttg caacagccgt tgtaccattt
     4981 atggcaatta tttacatact gatggctgtc attatcattt gtatcaatat acaagaagtg
     5041 ccagcgttat ttgcattaat tttcaaatca gcatttggat tacaatctgc ttttggtggt
     5101 atcgttggcg caatgataga gattggtgtt aaacgtggat tatattcaaa tgaggctggt
     5161 caaggtacag gtccacacgc agcagcggca gcagaagtat cacatccaag taaacaaggt
     5221 ctagtacaag cattttcagt ttatattgat acattatttg tatgtactgc aactgctctg
     5281 attatactta tttctggtac atataatgtg actgatggta cggttaatgc gaatggcaca
     5341 ccgcatttaa ttaaagatgg cggtatttat gttgaaaatg caacaggtaa agattattca
     5401 ggtactgcga tgtatgcaca agccggcatt gataaagcgt tccatggcag tggttatcaa
     5461 tttgatccta ctttctctgg cgtaggttcg tactttattg catttgcttt attcttcttt
     5521 gcatttacta caattttgtc gtactactac attacagaaa caaatgttgc ttatttaacg
     5581 cgtaatcaaa ataatcaagt ttcatcgata tttattaata ttgctcgtgt gattattttg
     5641 ttcgctacat tttacggtgc agttaaaaca gctgatgtag catgggcatt cggtgattta
     5701 ggtgtaggtc taatggcttg gttaaatatc attgcgattt ggattttaca taagcctgcc
     5761 gtaaatgctt taaaagatta tgaaattcaa aagaaacgtt taggcaacgg ttataatgca
     5821 gtttatcaac ctgatccgaa taaattacct aatgctgtct tttggttgaa gacgtatcca
     5881 gaacgtttaa aacaagcacg tgccaaaaag taatctactt ttgtttatag tatatgtagt
     5941 gatcatttga taaaaaagaa aagtattgag aattttaggt gctcagaaat ttgaatttta
     6001 aaaatatagt gtctcttggt acaataacaa tacaactact aggggcactt ttttatgtca
     6061 gaatttaaaa ctggtaagat taataaacat gttttatata gtaatatttt aaatagagat
     6121 gtcacgttaa gtatttattt accagaatct tataatcaac ttgttaaata taatgtcatt
     6181 ctttgctttg acggattaga ttttttacgt ttcgggagaa tacaacgtac atatgaatcg
     6241 ttaatcaaag aagcgcgtat tgatgatgcg atcattgttg gattccatta tgaagacgtt
     6301 gataagcgta gagaggaatt tcatccacaa ggaagtcgtt ctcatttaac tattcaatca
     6361 gtcggtaaag aaatattgcc atttattgac tcgacgtttt ctacactgaa agtaggtaat
     6421 gcaaggttat tagtagggga tagtttagcg ggtagtattg ccttattaac ggcgttgacc
     6481 tatccaacga tttttagtcg tgtagcaatg ttaagtccac attcagatga aaaagtatta
     6541 gataagctaa atcaatgtgc aaataaagaa caattgacaa tttggcatgt cattggtcta
     6601 gatgaaaaag attttacttt accaacaaat ggtaagcgtg ccgatttctt aacaccgaat
     6661 agagaattag ctgaacaaat taagaaatat aatataactt attattacga tgaatttgat
     6721 ggtggtcacc aatggaaaga ttggaaacca ttgctgtcag atatattatt gtatttttta
     6781 agtaaaaaca cagatgatca actttatgaa taatttacat tagtagattt agtatgaatt
     6841 gtcttcatat agtctggtct ataatataat ttataaaaga ttttactgtt taatttaatt
     6901 taaatttgac gaaattgcaa aagatgtata atgaattatt tttaatgtaa cggttttcaa
     6961 agaaatttga tataatagca ataggttaaa caaaggagga attcagatga ttttaggatt
     7021 agcattaatt ccatcaaagt catttcaaga agcggtggat tcttaccgta aaagatatga
     7081 taaacagtat tcacgaatta aaccacatgt gacaattaaa gcgccatttg aaattaaaga
     7141 tggtgattta gattctgtca ttgaacaggt tagagctcgt attaatggta taccagcagt
     7201 agaagttcat gctacaaaag cttctagctt caaaccaacg aacaatgtga tttactttaa
     7261 agttgcgaag acggacgact tagaagaatt gtttaatcgc tttaatggag aagatttcta
     7321 tggagaagct gaacatgttt ttgtgccaca ctttacaata gcacaaggac tatctagcca
     7381 agaattcgaa gatatttttg gtcaagtagc attagctggg gtagaccata aagaaattat
     7441 cgatgaatta actttgttac gttttgacga tgacgaagat aaatggaaag ttattgaaac
     7501 gtttaaatta gcttaagtaa cataatagta ttgttaatcg tagtatgttt gaattaataa
     7561 gaaaatggtc atttttattg aatgtaataa aaatgaccat tttctttatt ttaaaatacg
     7621 ttttaacctt acttagcttt ttctctattt actataaagt agcttccata aaatacagct
     7681 aagactaaaa agattaatgc cgagaaataa aatgtattgt ttaaattgtt ggtaaattgt
     7741 gtaattaatc cgccaaataa tggccctatc attgagccga atccttggat actattaaaa
     7801 acaccccaag tttcttcttg ttcatctgat ttgataaatc gtgccataaa ggtattccat
     7861 gctggtaata agatgccata cattagaccg atagctaaag cgataatcca caagatgtga
     7921 atattaacaa tcatagatag agtaaaaatt aatatcatgt ataaaataaa tccgcttaga
     7981 ataacaccat acataaagtt tctgctgcgg ttatctatta gtttcgataa aaatagcatc
     8041 gaaactgcac agccgatacc accaataatg attgcaacag tatattcaat tgtgcttacg
     8101 ttaataacct tagtagcata tgttggtaat ataggaacta gggcagcaat tgcggcacct
     8161 tgtaaaagaa taccagggaa caacaataaa tggcgctttg tcacatcaac aatttgtctc
     8221 aattgagctt taactggacg agtattataa tttgttaact ttacatcgac aaaataatat
     8281 aatatccatg caattaaaac gactaaagac atcatgaagg caaagcgtgt tgggtgcact
     8341 ttgataagta gattcataaa aaccatacct accaataggc ctaacaacca tgaaaaataa
     8401 acatagccca tttgtttgcc acgtttatct tcttcaacac tggataacat aatgacccaa
     8461 ataggactaa ctgcaatacc gagcatcata gcactaaata tgattacaaa aggtgatgct
     8521 ggaaaccaaa taactaaaaa taaacttgta aatgctaaaa taaatccagt cgttaaaacg
     8581 atttttgtgc cgaatttttt cagtaaaaat cctataacaa agtttgtaga tgcatcagca
     8641 ataaaatgta ttgaaaatgc tagagacgtt attgctacag caatggatgt aactgttggc
     8701 aagaaattaa tatagcttag gatatacatg cctctcgcaa attccattaa aaataagata
     8761 ataagcatta aaatgaaatt tttatgatta gcgtaattat ttaacgaaga atcttgcata
     8821 taaaggaacc tttccataaa tctcttgtgg ttgtgatgaa tgaccgatta aatcaagtaa
     8881 gtctcgacat attgtctgtg tagcatactt aattttatct tgttccattg tactaatcat
     8941 gttagttaat tgctcattac cgttagttaa acttgctaca atttttattg cttcttctgg
     9001 agtatcagcg attttaccaa aacctttttc ttcaaagtaa agggcatttt caagctcttg
     9061 accaggtgca ggatttagga aaatcattgg aatacaacgg gcgaaacctt cagttattgt
     9121 gataccacca ggtttcgtaa tcataagttg acttgatgcc atccattcat tcatgtgttt
     9181 ggtataacct agaatcaata cattctcgtt agatttaaac ttagctgtta aagaacgctt
     9241 tagctctttg ctcttaccac aaatcataac tacttgtgca tttgcacttt tcgctaatat
     9301 atcagtaatc atcgtgtcaa aacctttaga tacaccaaat gcaccagctg acattaaaat
     9361 agtttgctta tctggatcta agttgttgtc tattaaccac tgcttttgat taataggcgt
     9421 ttcaaatttg ttatcaatag gaatacctgt cactttaact gttgaaggat caatacctac
     9481 gtctatgaag tcttgtttcg tttcttttgt tgccacataa tatcttgttg aatacggcgt
     9541 aatccagttt ttatgtaagc gatagtctgt catcactgta gcaactggaa tattaatgtt
     9601 aaattgctca gttagtaccg acataactgg tgtaggaaac gttaataata ttaaatctgg
     9661 cttttctttt atcaataaat taattaactt attaagtcca tagtatttgt aaaaacattt
     9721 gtctagttta tctgggcggc tgtaataaaa ccctttgtac atatttctaa aatatttaaa
     9781 gctattgata taccattttt tacaaataga agtcaaaatt ggatgagctt ccataaataa
     9841 atcgtgctca atgacgctta aatggtctag attcatatca ttaagttgat taacgatact
     9901 ctgtgtaact tgcatatgac cgttaccgaa tgagccagta ataatcaata tctttttatt
     9961 ttgagtaacc attaatagcc accctccgtt agtttgaaaa ttttatttaa gtgtaactta
    10021 ttttacggca ttataaaaga aataaagacg caaagtcgtt acatttatag caattttaat
    10081 ctatagatga attgatacaa aataaaacgt tattttataa agcaatttat tgttctatgt
    10141 tttatttgta tatttaaaat tatccagtat acaattatag catatttttg gaaacaatta
    10201 tgatattata ccatgttaca agatggtttt aataatttaa gatgagccat aattgtaaaa
    10261 ctaattcata ataccgtatg ttttattttt aatagtagaa attagaaaat gctgattagt
    10321 aggatataac agtgaaatta taaatttatt aacatcaaca aaacgtgtat aataaacata
    10381 ttgtagaaaa aggagcggtt cagtttggat gcaagtacgt tgtttaagaa agtaaaagta
    10441 aagcgtgtat tgggttcttt agaacaacaa atagatgata tcactactga ttcacgtaca
    10501 gcgagagaag gtagcatttt tgtcgcttca gttggatata ctgtagacag tcataagttc
    10561 tgtcaaaatg tagctgatca agggtgtaag ttggtagtgg tcaataaaga acaatcatta
    10621 ccagctaacg taacacaagt ggttgtgccg gacacattaa gagtagctag tattctagca
    10681 cacacattat atgattatcc gagtcatcag ttagtgacat ttggtgtaac gggtacaaat
    10741 ggtaaaactt ctattgcgac gatgattcat ttaattcaaa gaaagttaca aaaaaatagt
    10801 gcatatttag gaactaatgg tttccaaatt aatgaaacaa agacaaaagg tgcaaatacg
    10861 acaccagaaa cagtttcttt aactaagaaa attaaagaag cagttgatgc aggcgctgaa
    10921 tctatgacat tagaagtatc aagccatggc ttagtattag gacgactgcg aggcgttgaa
    10981 tttgacgttg caatattttc aaatttaaca caagaccatt tagattttca tggcacaatg
    11041 gaagcatacg gacacgcgaa gtctttattg tttagtcaat taggtgaaga tttgtcgaaa
    11101 gaaaagtatg tcgtgttaaa caatgacgat tcattttctg agtatttaag aacagtgacg
    11161 ccttatgaag tatttagtta tggaattgat gaggaagccc aatttatggc taaaaatatt
    11221 caagaatctt tacaaggtgt cagctttgat tttgtaacgc cttttggaac ttacccagta
    11281 aaatcgcctt atgttggtaa gtttaatatt tctaatatta tggcggcaat gattgcggtg
    11341 tggagtaaag gtacatcttt agaaacgatt attaaagctg ttgaaaattt agaacctgtt
    11401 gaagggcgat tagaagtttt agatccttcg ttacctattg atttaattat cgattatgca
    11461 catacagctg atggtatgaa caaattaatc gatgcagtac agccttttgt aaagcaaaag
    11521 ttgatatttt tagttggtat ggcaggcgaa cgtgatttaa ctaaaacgcc tgaaatgggg
    11581 cgagttgcct gtcgtgcaga ttatgtcatt ttcacaccgg ataatccggc aaatgatgac
    11641 ccgaaaatgt taacggcaga attagccaaa ggtgcaacac atcaaaacta tattgaattt
    11701 gatgatcgtg cagaagggat aaaacatgca attgacatag ctgagcctgg ggatactgtc
    11761 gttttagcat caaaaggaag agaaccatat caaatcatgc cagggcatat taaggtgcca
    11821 catcgagatg atttaattgg ccttgaagca gcttacaaaa agttcggtgg tggccctgtt
    11881 gattaataaa agatttattg atgaaggtaa aactattgat gtttatttat tcgaagcatt
    11941 aaataaccag ataatcattg ctataccaga ttggttttgg tcatatcaga tggcaatgac
    12001 attagatgaa gaaacttgtt ttgaagcaat actcatgcaa ttgtttgttt ttaaagaaga
    12061 ggaagaggca gaatcgattg catcacaact aacagattgg atagaaacat ataaaaagga
    12121 gaaagactaa tgaacttaaa gcaagaagtt gagtctagaa agacttttgc gattatttca
    12181 catcccgatg cagggaaaac aacgttaact gaaaaactat tgtacttcag tggtgctatt
    12241 cgtgaagcgg gtacagttaa agggaagaag actggtaaat ttgcgacaag tgactggatg
    12301 aaagttgaac aagagcgtgg tatttctgta actagttcag taatgcaatt tgattacgat
    12361 gattataaaa tcaatatctt agatacacca ggacatgaag acttttcaga agatacgtat
    12421 agaacattaa tggcagttga cagtgctgtc atggtcatag actgtgcaaa aggtattgaa
    12481 ccacaaacat tgaagttatt taaagtttgt aaaatgcgtg gtattccaat ctttacattc
    12541 attaataaat tagaccgagt aggtaaagaa ccatttgaat tattagatga aatcgaagag
    12601 acattaaata ttgaaacata ccctatgaat tggccaattg gtatgggaca aagtttcttt
    12661 ggcatcattg atagaaagtc taaaacaatt gaaccattta gagatgaaga aaatatatta
    12721 catttgaatg atgattttga gttggaagaa gatcatgcaa ttacaaatga tagtgatttt
    12781 gaacaagcga ttgaagaatt aatgttggtt gaagaagcgg gtgaagcctt tgataatgac
    12841 gcgctgttga gtggagactt aacacctgta tttttcggtt cagctttagc taactttggt
    12901 gtacaaaatt tcttaaatgc atatgttgat tttgcgccaa tgccaaatgc gagacaaaca
    12961 aaagaagacg ttgaagtaag cccgtttgat gattcatttt caggatttat ctttaaaatt
    13021 caagccaaca tggaccctaa acaccgtgat agaattgcct ttatgcgtgt cgttagtggt
    13081 gcatttgaac gtggtatgga tgttactttg caacgtacta ataaaaagca aaagatcaca
    13141 cgttcaacgt catttatggc agacgataaa gaaactgtga atcatgctgt agcaggcgat
    13201 atcattggac tatatgatac tggtaattat caaattggag atactttagt tggtggaaaa
    13261 caaacctaca gtttccaaga tttaccacaa tttacgccag aaatttttat gaaagtttct
    13321 gctaaaaacg tcatgaaaca gaagcatttc cataaaggta ttgaacaatt agtacaagaa
    13381 ggtgcgattc aatactataa aacattacac acaaaccaaa ttattttagg tgctgttggt
    13441 cagttacaat ttgaagtttt cgaacataga atgaaaaacg aatataatgt tgatgttgtt
    13501 atggagccag taggccgtaa aattgcacgt tggattgaaa atgaagacca aattacagat
    13561 aagatgaaca catcaagatc gattttagtg aaagatagat atgacgattt agtattctta
    13621 tttgaaaatg aatttgcaac aagatggttt gaagagaaat tccctgaaat taaattgtat
    13681 agtttacttt aacagctcaa ttgtataatc gaatttgtta cattaaaaat aattgtttcg
    13741 ttgaagaaaa ataaattgta tattttaaaa gaaaaaggta tactatgatg tatcaaatga
    13801 ataacctatg gcattttgtc agaggggagt aacttaagaa tcatgaccgt ataaatgatt
    13861 cgacacttta tcgtcattac gaagatatct tccggtaaag tgggcaattt aaattgctta
    13921 gtgagacctt tgctatttat ttagcatagg tctttttgtt tgtacttaac ttatttattt
    13981 aaaggagttg tacatgttaa tggatccaag tttgatctta ccttatttat gggtacttgt
    14041 cgttttagta tttttagaag gcttattagc agcagataac gcgattgtta tggctgtaat
    14101 ggttaagcac ttaccacccg aacaacgtaa aaaagctttg ttttacggtt tgttaggtgc
    14161 atttgtattt agatttttag cattattctt aattagtatt atcgcgaact tttggtttat
    14221 tcaagctgca ggagcggttt acttaattta tatgtcaatc aaaaatctgt ggcagttctt
    14281 taaacaccca gaaattgaaa gtcctgaagc tggagatgat catcattatg atgaatctgg
    14341 tgaagagatt aaagcaagta acaaatcatt ctggggaact gtgttgaaaa tagaatttgc
    14401 agatatcgca tttgccattg attctatgct tgctgcttta gctattgctg taacacttcc
    14461 taaagttggt attcactttg gtggtatgga cttaggtcag ttcgtagtca tgttcctagg
    14521 tggaatgatt ggtgttattc taatgcgtta tgcagcaaca tggtttgtag agctattaaa
    14581 caaatatcca ggacttgaag gtgcagcctt cgcgatcgtt ggttgggtag gtgttaaatt
    14641 agttgtcatg gtattagcgc acccagacat cgctgtattg cctgagcact tcccacatgg
    14701 cgtattatgg caatctattt tctggacagt actaattgga ttagtaatta tcggttggtt
    14761 aggttcagtt gttaaaaata aaaaatcgca taaataattg atgtgaagcg gacaatctta
    14821 atttagttta aggttgtcct ttttcattta attgagtgat ttatgaaaaa tggattttga
    14881 agaatgtgaa tcaaaagatg cgatatagta ttaagaaaat gtgcctttta tatttagcat
    14941 tttttcaata gaaattatat agattttaaa gcaaattagg tgttaatgtg tcataatgat
    15001 aagtgatttt attgaatgga gtggacatta gtggatattg gtaaaaaaca tgtaattcct
    15061 aaaagtcagt accgacgtaa gcgtcgtgaa ttcttccaca acgaagacag agaagaaaat
    15121 ttaaatcaac atcaagataa acaaaatata gataatacaa catcaaaaaa agcagataag
    15181 caaatacata aagattcaat tgataagcac gaacgtttta aaaatagttt atcatcgcat
    15241 ttagaacaga gaaaccgtga tgttaatgag aataaagctg aagaaagtaa aagtaatcag
    15301 gatagtaagt cagcatataa cagagatcat tatttaacag acgatgtatc taaaaaacaa
    15361 aattcattag attcagtgga ccaagataca gtgaaatcaa aatattatga gcaaaattct
    15421 gaagcgactt tatcaactaa atcaaccgat aaagtagaat caactgaaat gagaaagcta
    15481 agttcagata aaaacaaagt tggtcatgaa gagcaacatg tactttctaa accttcagaa
    15541 catgataaag agactagaat tgattctgag tcttcaagaa ctgattcaga cagctcgatg
    15601 cagacagaga aaataaaaaa agacagttca gatggaaata aaagtagtaa tctgaaatct
    15661 gaagtaatat cagacaaatc aaatacagta ccaaaattgt cggaatctga tgatgaagta
    15721 aataatcaga agccattaac tttaccggaa gaacagaaat tgaaaagaca gcaaagtcaa
    15781 aatgagcaaa caaaaaccta tacatatggt gatagcgaac aaaatgacaa gtctaatcat
    15841 gaaaatgatt taagtcatca tataccatcg ataagtgatg ataaagataa cgtcatgaga
    15901 gaaaatcata ttgttgacga taatcctgat aatgatatca atacaccatc attatcaaaa
    15961 acagatgacg atcgaaaact tgatgaaaaa attcatgttg aagataaaca taaacaaaat
    16021 gcagactcgt ctgaaacggt gggatatcaa agtcagtcaa ctgcatctca tcgtagcact
    16081 gaaaaaagaa atatttctat taatgaccat gataaattaa acggtcaaaa aacaaataca
    16141 aagacatcgg caaataataa tcaaaaaaag gctacatcaa aattgaacaa agggcgcgct
    16201 acgaataata attatagtga cattttgaaa aagttttgga tgatgtattg gcctaaatta
    16261 gttattctaa tgggtattat tattctaatt gttattttga atgccatttt taataatgtg
    16321 aacaaaaatg atcgcatgaa tgataataat gatgcagatg ctcaaaaata tacgacaacg
    16381 atgaaaaatg ccaataacac agttaaatcg gtcgttacag ttgaaaatga aacatcaaaa
    16441 gattcatcat tacctaaaga taaagcatct caagacgaag tgggatcagg tgttgtatat
    16501 aaaaaatctg gagatacgtt atatattgtt acgaatgcac acgttgtcgg tgataaagaa
    16561 aatcaaaaaa taactttctc gaataataaa agtgttgttg ggaaagtgct tggtaaagat
    16621 aaatggtcag atttagctgt tgttaaagca acttcttcag acagttcagt gaaagagata
    16681 gctattggag attcaaataa tttagtgtta ggagagccaa tattagtcgt aggtaatcca
    16741 cttggtgtag actttaaagg cactgtgaca gaaggtatta tttcaggtct gaacagaaat
    16801 gttcctattg atttcgataa agataataaa tatgatatgt tgatgaaagc tttccaaatt
    16861 gatgcatcag taaatccagg taactcgggt ggtgctgtcg tcaatagaga aggaaaatta
    16921 ataggtgtag ttgcagctaa aattagtatg ccaaacgttg aaaatatgtc atttgcaata
    16981 cctgttaatg aagtacaaaa gattgtaaaa gatttagaaa caaaaggtaa aattgactat
    17041 cccgatgtag gtgttaaaat gaagaatatt gccagtctaa atagttttga aagacaagca
    17101 gttaaattgc caggaaaagt taagaacggt gttgttgtag atcaagttga caacaatggt
    17161 ttagcagatc aatctggtct gaaaaaaggt gatgtaatta ctgaattaga tggcaaactt
    17221 ttagaagatg atttacgctt taggcagatt atatttagtc ataaagatga cttgaaatca
    17281 attacagcga agatttatag agatggtaaa gagaaagaaa ttaatattaa actaaaataa
    17341 tgttgaggtg aacaacgtgt caatttttag ccagttttta aaaagatcaa gccctcaaca
    17401 aggtattgta ttgtactata tcgtcgcaat tgtcattgca tttttattat taaacttacc
    17461 gtatgttcat aaaccaggtg tagaagtaaa tccaattgac acattatttg ttgccgtatc
    17521 cggaattagt gttactggat tgtctccgat aagtattgtc gatacctatt ctacatttgg
    17581 acaattaatt atcctcgtga tattaaatat tggtggaatt ggcgtcatgg caattggtac
    17641 gatgttatgg gtggtactag gtaaacatat tggaattaga gaacgtcagt taattatgtt
    17701 agataataac aaaaacacaa tgagtggtac cgtcaaattg attattgata ttgtaaaatc
    17761 aatatttgta atcgaactcg taggagccat gttattagca ttttactttt atcgagataa
    17821 tccagattta aaatatgcaa tcatgcaagg tgtttttgtt tctatttctg ccactaccaa
    17881 tggtggatta gatattacag gtaagtcatt aattccttat gcacatgatt attttgtaca
    17941 agcgatagtt atatttttaa taattttagg atcaatcggc ttcccagtat tattagaagt
    18001 taaagcttat attcaaaata gggttactaa ttttagattt tcattattta ctaaaattac
    18061 gacatcaaca tatttattcc tatttattgt tggggtatta gccattctat tatttgaaca
    18121 taaccatgcg ttcaaaggtt taagttggca tcaatcgtta ttctattcgc tgtttcaatc
    18181 agcgactaca agaagtgcgg gtcttcaaac aattgatgtg acaacactaa gtgaccccac
    18241 taatattatc atgggtattt taatgtttat aggatcttcg ccaagttcgg ttggtggcgg
    18301 tattcgtaca acaactttcg ctattttaat tttgttttta attaacttta gtaataatgc
    18361 cgataaaaca tccattaaag tttacaatag agaagtacac attatggata ttcaacgttc
    18421 atttgcagta tttacaatgg cgacaatttt aacattttta ggaatgctaa ttatatcagc
    18481 tactgaaaat ggtaagctta catttttaca agtatttttt gaagtcatgt ctgcatttgg
    18541 aacttgtgga ctatcgcttg gtgtcacaag tgatattagt gatatttcta aggtcgtact
    18601 aatgatactc atgtttatag gacgtgttgg cttaatatca tttatcatta tgatagcagg
    18661 acgtcgagaa ccagataaat tccattatcc aaaagaacgt attcaaatag gataatataa
    18721 tagcaatcta agtttagtta atgtagattt taactggaac ttagattgct tttttagttt
    18781 gtatttttaa cttattttat aagacgattg gtttcgaaaa tggtaaacta gtaacaatga
    18841 gaggtgtaac atgatggaaa aaaatgaaaa cattaatgta gagattttaa ctacgtcaga
    18901 tatgcatagt catttcttaa atggtgatta tggttcaaat atttatagag ctggtactta
    18961 tgttaaccaa gtaagagcac aaaatcatcg cgtcatttta ttagatagtg gcggaagttt
    19021 agctggctcg ttagcggcct attattatgc tattgttgca ccttataaac gacatccaat
    19081 gataaagtta atgaacagaa tgcattatga tgctagcggt gtgagtccaa gtgaattcaa
    19141 gtttggttta tcatttttaa ctcgttcaat tgctttggca cgttttccat ggttatcagc
    19201 aaatattgaa tacaatgtta ctaaggagcc ttatttttca actccatatt gtattaaaca
    19261 ttttggtgac ttaaaaattg ctatcgtagg cgtcacagca gatggtttaa tggaaaatga
    19321 gtattctgaa atggagcaag atgtatctat tgaaaagaca ttagtggcat caaaacgttg
    19381 gattagatat atccatgaag ttgaagagcc agattttttg attgtaattt atcatggtgg
    19441 attgaataaa attagtaata gtacgaaaaa taaaaaggca agttcgaatg aagctgaaaa
    19501 attaatggaa gaactcggtg ttatagattt aatgattaca gctcatcagc atcaaacaat
    19561 agtaggtcaa gatcatgaaa cgtattatgt tcaggctggt caagatgcca aagagcttgt
    19621 acatctttcg attaatttta aaaagagaac aacaacttat gatgttgaaa gcattgattc
    19681 taaagtgatt gacttaaatg agtatgaaga ggatcaagaa ttattagatt taacattcta
    19741 tgatagaaaa gcagtggctt attggtcaca ggaaatcata agtgataaag gtttgatgtt
    19801 atcagtaaat gggttacaag atttagtctg tcaaacacat ccattttcgc aattattaca
    19861 tgatgcaatt caccttgcat ttgataatga tataacatgt gtccacgtgc ctatgaacgg
    19921 agagaagggg ttgagtggac agattcgaaa tgaagatttg tatcatgcat acccatatcc
    19981 agataagcca atggatatga caattagtgg tcaaaatatc aaagatatat tggagtatag
    20041 ttattcacat ttagattttg ttaacgagca attaagctta acaattattg atgaaacgtt
    20101 atgtacaatg tggcaaggat tcaattatga gattgatatg aatcaagaac ctgggcaacg
    20161 agtaatgtta gatcaaattg atttgactaa gagttataga gttacaatga ctgactattg
    20221 ttatcgtaac tacaagaatt atttaaaaaa tgctattata catgaatcat acgatgaaac
    20281 aatgagtaca ttaattgcag agaagttaag agatccgaat tatcgtattt catgtagtga
    20341 taattttata gttaaaaaca ggtaaatatt gctatgtaat aaattaatta taagttcaac
    20401 aagtataaaa acctttctta gagaagatta tctaggaaag gtttttagaa ttttaaaatt
    20461 gatataaaag aacagtgaaa ttctcattca ttatatataa gtaaacaaaa aagctaaaat
    20521 ggtatatacc attttagcaa gtaacggaaa cggagggatt cgaaccctcg cgccgctttc
    20581 gcgacctaca cccttagcag gggcgcctct tcagccaact tgagtacgtt tccaatggct
    20641 ccacaggtag gactcgaacc tacgaccgat cggttaacag ccgatagctc taccactgag
    20701 ctactgtgga ttaatttgta tgtgtttgaa tatcaagcac aaatattatt ataacaagat
    20761 taagttaatt tgcaatagat accttaaaaa aatatgcaga acatttacac tatatttata
    20821 aaacattccg catattttaa aaataaacaa tttatttatc ttcaaataaa gaatagcgtg
    20881 tcaatgcttc aaacacattc aatgtggctt tattataatc tattggttgg tcgggatttt
    20941 ttgatatcat gcgagattgt ttatctacca tgtaatagta aaaaatggaa ttgttatatt
    21001 gatgccataa actgtggtat gaaacatgaa gaatgattga ttcattatta ataaatgtca
    21061 ctttacattt acgatttttt aattctttaa tactttcgat ataatgcata tttaaccaaa
    21121 tattttcatt ttgtctgtca gaatgtgttg ggaaaaaata agttggaaat aatggtgtta
    21181 gtaaaatagg tggtttacta gaaatgccag taatgcggtt tgtctctgct ttcttgccaa
    21241 gataagtatt accataaaat ttgcaagagc gttcaatgat tttctggact ttaaaaggat
    21301 tttgaatacg cgttttgtca aaccgaatta tttcactacc gtttctttga tcgtcatcat
    21361 caaatgctgg tcgaataacc atgtctcctt tgcgtatcac ataaatattt tgagaataca
    21421 taagcaaaac ctcgctttat taagtt
//
LOCUS       DAMQWL010000036        21178 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.036, whole genome shotgun sequence.
ACCESSION   DAMQWL010000036 DAMQWL010000000
VERSION     DAMQWL010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 21178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21178
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.036"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            507..1418
                     /gene="rapZ"
                     /locus_tag="PF788_001217"
     CDS             507..1418
                     /gene="rapZ"
                     /locus_tag="PF788_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499344.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDG6303483.1"
                     /translation="MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPP
                     VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEAS
                     TEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELK
                     ERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDK
                     DVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERL
                     GNYLNEVFEYNVYVHHRDAHIESGEKK"
     gene            1415..2410
                     /locus_tag="PF788_001218"
     CDS             1415..2410
                     /locus_tag="PF788_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HDG6303484.1"
                     /translation="MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGK
                     IRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITN
                     DFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLE
                     PNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVM
                     TQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKA
                     ELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK"
     gene            2520..3464
                     /gene="whiA"
                     /locus_tag="PF788_001219"
     CDS             2520..3464
                     /gene="whiA"
                     /locus_tag="PF788_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HDG6303485.1"
                     /translation="MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVI
                     NVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGI
                     LKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGL
                     TKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNS
                     VNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLK
                     ELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL"
     gene            4038..4625
                     /gene="clpP"
                     /locus_tag="PF788_001220"
     CDS             4038..4625
                     /gene="clpP"
                     /locus_tag="PF788_001220"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDG6303486.1"
                     /translation="MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSI
                     VSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSF
                     LLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQ
                     SIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK"
     gene            complement(4868..5770)
                     /locus_tag="PF788_001221"
     CDS             complement(4868..5770)
                     /locus_tag="PF788_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDG6303487.1"
                     /translation="MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKIS
                     YVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSR
                     NKAPKALFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVV
                     IGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESA
                     SGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPN
                     KIQALGFQFKYSNLKMALEDLIKE"
     gene            6472..7101
                     /locus_tag="PF788_001222"
     CDS             6472..7101
                     /locus_tag="PF788_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4887 domain-containing protein"
                     /protein_id="HDG6303488.1"
                     /translation="MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFA
                     YVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQ
                     QNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQP
                     AQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK"
     gene            complement(7290..7436)
                     /locus_tag="PF788_001223"
     CDS             complement(7290..7436)
                     /locus_tag="PF788_001223"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303489.1"
                     /translation="MRVGVGPQHSEIGSSQFLQAMQVGVGPQHREIGFPISTGNGSWG
                     GTTK"
     gene            7861..8874
                     /locus_tag="PF788_001224"
     CDS             7861..8874
                     /locus_tag="PF788_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HDG6303490.1"
                     /translation="MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHM
                     DMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIK
                     NKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAI
                     HLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLL
                     EPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQ
                     GQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKI
                     ILE"
     gene            8927..9937
                     /gene="gap"
                     /locus_tag="PF788_001225"
     CDS             8927..9937
                     /gene="gap"
                     /locus_tag="PF788_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDG6303491.1"
                     /translation="MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHL
                     LKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTD
                     KDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVA
                     KVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIG
                     KVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTED
                     EIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAEL
                     SK"
     gene            10076..11266
                     /locus_tag="PF788_001226"
     CDS             10076..11266
                     /locus_tag="PF788_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDG6303492.1"
                     /translation="MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTI
                     QYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEA
                     AIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHAS
                     NVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIAD
                     KIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSN
                     DAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTI
                     GVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKA
                     INNK"
     gene            11388..12149
                     /locus_tag="PF788_001227"
     CDS             11388..12149
                     /locus_tag="PF788_001227"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDG6303493.1"
                     /translation="MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAI
                     QLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRE
                     LFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQ
                     LKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKP
                     NNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK"
     gene            12152..13669
                     /locus_tag="PF788_001228"
     CDS             12152..13669
                     /locus_tag="PF788_001228"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HDG6303494.1"
                     /translation="MAKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQ
                     IEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIA
                     HVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSA
                     LKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKE
                     GVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGF
                     KVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHV
                     TYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILN
                     FANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDD
                     QPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH"
     gene            13799..15103
                     /gene="eno"
                     /locus_tag="PF788_001229"
     CDS             13799..15103
                     /gene="eno"
                     /locus_tag="PF788_001229"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017466665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDG6303495.1"
                     /translation="MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTG
                     EHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMIALDGT
                     PNKGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDA
                     PIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSKRGLETAVGDEGGFAPKFEGTE
                     DAVETIIQAIEAAGYKPGEEVFLGFDCASSEFYENGVYDYSKFEGEHGAKRTAAEQVD
                     YLEQLVDKYPIITIEDGMDENDWDGWKQLTERIGDRVQLVGDDLFVTNTEILAKGIEN
                     GIGNSILIKVNQIGTLTETFDAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQ
                     IKTGSLSRTDRIAKYNQLLRIEDELFETAKYDGIKSFYNLDK"
     gene            15443..15901
                     /locus_tag="PF788_001230"
     CDS             15443..15901
                     /locus_tag="PF788_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303496.1"
                     /translation="MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLN
                     LTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFT
                     LINLSITIQAIKAAHGAYLTLPILIVIIGSVALAIYMLVVSIKRKSTFNR"
     gene            15968..16201
                     /gene="secG"
                     /locus_tag="PF788_001231"
     CDS             15968..16201
                     /gene="secG"
                     /locus_tag="PF788_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499357.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDG6303497.1"
                     /translation="MHTFLIVLLIIDCIALITVVLLQEGKSSGLSGAISGGAEQLFGK
                     QKQRGVDLFLNRLTIILSILFFVLMICISYLGM"
     gene            16317..17057
                     /locus_tag="PF788_001232"
     CDS             16317..17057
                     /locus_tag="PF788_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase"
                     /protein_id="HDG6303498.1"
                     /translation="MQIKLPKPFFFEEGKRAVLLLHGFTGNSSDVRQLGRFLQKKGYT
                     SYAPQYEGHAAPPDEILKSSPFVWFKDALDGYDYLVEQGYDEIVVAGLSLGGDFALKL
                     SLNRDVKGIVTMCAPMGGKTEGAIYEGFLEYARNFKKYEGKDQETIDNEMDHFKPTET
                     LKELSEALDTIKEQVDEVLDPILVIQAENDNMIDPQSANYIYDHVDSDDKNIKWYSES
                     GHVITIDKEKEQVFEDIYQFLESLDWSE"
     gene            17091..19463
                     /gene="rnr"
                     /locus_tag="PF788_001233"
     CDS             17091..19463
                     /gene="rnr"
                     /locus_tag="PF788_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDG6303499.1"
                     /translation="MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLV
                     ELEQSGLIERTKTDRYQKKHSYRGQSKLIKGTLSQNKKGFAFLRPEDEDMEDIFIPPT
                     KINRALDGDTVIVEIHQSKGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDD
                     KRIMQDIFIPKGQSLGAVDGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSI
                     IYQHGIEIEFPDEVLQEAEAVPDHIENTEIKGRHDLRDELTITIDGADAKDLDDAISV
                     KKLANGNTQLTVSIADVSYYVTEGSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICS
                     LNPNVDRLTLSCRMEIDASGRVVKHEIFDSVIHSDYRMTYDAVNQIITEKDPNIREQY
                     NEITPMLDLAQDLSNRLIQMRKRRGEIDFDISEAKVLVNEDGIPTDVQLRQRGEGERL
                     IESFMLIANETVAEHFSKLDVPFIYRVHEQPKSDRLRQFFDFITNFGIMIKGTGEDIH
                     PTTLQKVQEEVEGRPEQMVISTMMLRSMQQAHYDDVNLGHFGLSAEYYTHFTSPIRRY
                     PDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELAEHTSKRERRAIEAERDTDELKKAE
                     YMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHIANMTDDYYRFEERQMALIGERQ
                     AKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDRSQRPARGKTIQAKTRGKSLD
                     KSKSDDKGRKKKGKQRKGKNQRNNDKSGNSKHKPFYKDKSVKKKARRKKK"
     gene            19485..19949
                     /gene="smpB"
                     /locus_tag="PF788_001234"
     CDS             19485..19949
                     /gene="smpB"
                     /locus_tag="PF788_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDG6303500.1"
                     /translation="MAKKKSPGTLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGS
                     ANLKDSYAQVKNGEMYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREI
                     GYSIVPLKLYLKHGHCKVLLGVARGKKKYDKRQALKEKAVKRDVARDMKARY"
     gene            20040..20401
                     /gene="ssrA"
                     /locus_tag="PF788_001235"
     tmRNA           20040..20401
                     /gene="ssrA"
                     /locus_tag="PF788_001235"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            20723..21004
                     /locus_tag="PF788_001236"
     CDS             20723..21004
                     /locus_tag="PF788_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001788408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303501.1"
                     /translation="MATEKELFIFVTSLSGCSYKEMSRVLIFSLESICLLTQSAIVDE
                     TEIKEVVVKKCISQHTIVAIFIVLDDKLFLEFLVFIICNYTTSFTNINV"
BASE COUNT         7517 a         3116 c         4092 g         6453 t
ORIGIN      
        1 tactaatttc tatagaaaaa gtattacttt atcgttgtcc caccccaact tgcacattat
       61 tgtaagctga ctttccgcca gcttctgtgt tggggccccg ccaacttgca ttgtctgtag
      121 aaattgggaa tccaatttct ctatgttggg gcccacaccc caactcgcat tgcctgtaga
      181 atttcttttc gaaattctct gtgttggggc ccacacccca actcgcattg cctgtagaat
      241 ttcttttcga aattctctgt gttggggccc ctgactagag ttgaaaaaag cttgttgcaa
      301 gcgcattttc attcagtcaa ctactagcaa tataatatta tagaccctag gacattgatt
      361 tatgtcccaa gctcctttta aatgatgtat atttttagaa atttaatcta gacatagttg
      421 gaaataaata taaaacatcg ttgcttaatt ttgtcataga acatttaaat taacatcatg
      481 aaattcgttt tggcggtgaa aaaataatgg ataataatga aaaagaaaaa agtaaaagtg
      541 aactattagt tgtaacaggt ttatctggcg caggtaaatc tttggttatt caatgtttag
      601 aagacatggg atatttttgt gtagataatc taccaccagt gttattgcct aaatttgtag
      661 agttgatgga acaaggaaat ccatccttaa gaaaagtggc aattgcaatt gatttaagag
      721 gtaaggaact atttaattca ttagttgcag tagtggataa agtcaaaagt gaaagtgacg
      781 tcatcattga tgttatgttt ttagaagcaa gtactgaaaa attaatttca agatataagg
      841 aaacgcgtcg tgcacatcct ttgatggaac aaggtaaaag atcgttaatc aatgcaatta
      901 atgatgagcg agagcatttg tctcaaatta gaagtatagc taattttgtt atagatacta
      961 caaagttatc acctaaagaa ttaaaagaac gcattcgtcg atactatgaa gatgaagagt
     1021 ttgaaacttt tacaattaat gtcacaagtt tcggttttaa acatgggatt cagatggatg
     1081 cagatttagt atttgatgta cgatttttac caaatccata ttatgtagta gatttaagac
     1141 ctttaacagg attagataaa gacgtttata attatgttat gaaatggaaa gagacggaga
     1201 ttttctttga aaaattaact gatttgttag attttatgat acccgggtat aaaaaagaag
     1261 ggaaatctca attagtaatt gccatcggtt gtacgggtgg acaacatcga tctgtagcat
     1321 tagcagaacg actaggtaat tatctaaatg aagtatttga atataatgtt tatgtgcatc
     1381 atagggacgc acatattgaa agtggcgaga aaaaatgaga caaataaaag ttgtacttat
     1441 cggtggtggc actggcttat cagttatggc taggggatta agagaattcc caattgatat
     1501 tacggcgatt gtaacagttg ctgataatgg tgggagtaca gggaaaatca gagatgaaat
     1561 ggatatacca gcaccaggag acatcagaaa tgtgattgca gctttaagtg attctgagtc
     1621 agttttaagc caactttttc agtatcgctt tgaagaaaat caaattagcg gtcactcatt
     1681 aggtaattta ttaatcgcag gtatgactaa tattacgaat gatttcggac atgccattaa
     1741 agcattaagt aaaattttaa atattaaagg tagagtcatt ccatctacaa atacaagtgt
     1801 gcaattaaat gctgttatgg aagatggaga aattgttttt ggagaaacaa atattcctaa
     1861 aaaacataaa aaaattgatc gtgtgttttt agaacctaac gatgtgcaac caatggaaga
     1921 agcaatcgat gctttaaggg aagcagattt aatcgttctt ggaccagggt cattatatac
     1981 gagcgttatt tctaacttat gtgtgaatgg tatttcagat gcgttaattc attctgatgc
     2041 gcctaagcta tatgtttcta atgtgatgac gcaacctggg gaaacagatg gttatagcgt
     2101 gaaagatcat atcgatgcga ttcatagaca agctggacaa ccgtttattg attatgtcat
     2161 ttgtagtaca caaactttca atgctcaagt tttgaaaaaa tatgaagaaa aacattctaa
     2221 accagttgaa gttaataagg ctgaacttga aaaagaaagc ataaatgtaa aaacatcttc
     2281 aaatttagtt gaaatttctg aaaatcattt agtaagacat aatactaaag tgttatcgac
     2341 aatgatttat gacatagctt tagaattaat tagtactatt cctttcgtac caagtgataa
     2401 acgtaaataa tatagaacgt aatcatatta tgatatgata atagagctgt gaaaaaaatg
     2461 aaaatagaca gtggttctaa ggtgaatcat gttttaaata agaaaggaat gactgtacga
     2521 tgagctttgc atcagaaatg aaaaatgaat taactagaat agacgtcgat gaaatgaatg
     2581 caaaagcaga gctcagtgca ctgattcgaa tgaatggtgc acttagtctt tcaaatcaac
     2641 aatttgttat aaatgttcaa acggaaaatg caacaacggc aagacgtatt tattcgttga
     2701 ttaaacgtgt ctttaatgtg gaagttgaaa tattagtccg taaaaaaatg aaacttaaaa
     2761 aaaataatat ttatatttgt cgtacaaaga tgaaagcgaa agaaattctt gatgaattag
     2821 gaattttaaa agacggcatt tttacgcatg aaattgatca ttcaatgatt caagatgacg
     2881 aaatgagacg cagttacttg agaggagctt ttctggcagg tggctcagtg aataaccctg
     2941 aaacatcttc gtaccatttg gaaatttttt ctcaaaatga gagtcatgca gaaggcttaa
     3001 cgaaactaat gaatagttat gagttgaatg ccaaacattt agagcgaaaa aaaggaagta
     3061 ttacgtattt aaaagaagcg gaaaagattt cggattttct tagtttgata ggtggctatc
     3121 aagcgttatt aaaatttgaa gacgtacgta ttgtaagaga tatgcgtaat tctgttaacc
     3181 gactcgttaa ttgtgaaacg gccaatctaa ataaaacagt tagtgctgcg atgaaacaag
     3241 ttgagagcat taaattgatt gataaagaaa ttggtattga aaatttacca gacaggttga
     3301 gagagattgc tagaattcga gtagaacatc aagaaatttc gttgaaagag cttggagaaa
     3361 tggtatcaac tggtccaatt tcaaaatcag gtgtaaatca ccgattaaga aaactgaatg
     3421 atttagccga taagattaga aatggtgaac aaatagaatt ataagtaaga aggtgttttt
     3481 ggtagtgaat tatcaaaaac acttttttta tgattaaaaa gtgtttaatg aataatagtc
     3541 gactaactat taaattgagc tggaaagttt aatgaaggaa attcaataac caagtgatgc
     3601 ctaattttct cattaaatag catcatatgt atcaatttgg tcataagaaa atatgaatgt
     3661 gataattaat tgagtccctg aaagtccctg atcatagaca aaaacaaaat cagcataaat
     3721 aagaatcccg acattgcggg attctctgta ttgaaaagta ttgtatttta ttaaaacagc
     3781 ctccttgaag ggaattgaac ccctatctta agaaccggaa tcttacgtgt tatccattac
     3841 accacaagga gcaaatatgt aatcatatct ctgtactatg agaagtaaaa taagtacaat
     3901 ctaaaataga tattatcagt ttacaaagga aagagaaaag cgtcaaacaa tgtaactatt
     3961 taaagtcaaa gtgtttgacc aaatttgact taatatgtaa aataatgagt aacagttatt
     4021 acaaggagga aatatagatg aatttaattc ctacagttat tgaaacaaca aaccgcggtg
     4081 aacgtgcata tgatatatac tcacgtttat taaaagaccg tattattatg ttaggttcac
     4141 aaattgatga caacgtagca aattcaatcg tatcacagtt attattctta caagcgcaag
     4201 actcagagaa agatatttat ttatacatta attcaccagg tggaagtgta acagctggtt
     4261 ttgcgattta tgatacaatt caacacatta aacctgatgt tcaaacaatt tgtatcggta
     4321 tggctgcatc aatgggatca ttcttattag cagctggtgc aaaaggtaaa cgtttcgcgt
     4381 taccaaatgc agaagtaatg attcaccaac cattaggtgg tgctcaagga caagcaactg
     4441 aaatcgaaat tgctgcaaat cacattttaa aaacacgtga aaaattaaac cgcattttat
     4501 cagagcgtac tggtcaaagt attgaaaaaa tacaaaaaga cacagatcgt gataacttct
     4561 taactgcaga agaagctaaa gaatatggct taattgatga agtgatggta cctgaaacaa
     4621 aataattcaa agtaaagagt agactaagct gtctgctctt tttgtatgag taaaccaagg
     4681 tgtcaataat ttgtttacta tactttgagc ggaaatatga ttgaatgaag ctagttgaac
     4741 cgtaactata tgaaatgttc ccttcaaagt agacattgaa aggaacattt caatcctttg
     4801 tttgtaagtc gctctagaca ttacatttag tacatatgtt gtttctaatg ctcattaatg
     4861 gtattgatta ttctttaatt aaatcttcaa gtgccatttt taaattacta tatttaaatt
     4921 ggaatcccaa tgcttgaatt ttattaggta atactttttg agtatccaat actactgttg
     4981 acatttgacc aagtatgaga cgcattgcaa gacttggtgc ccaagtttca tgaggcttat
     5041 gcatagctct tgctaaagtg tagccaaata aattttgacg ttcaggtata ggtgcagtta
     5101 aattaaacgg accactagct gactcgttat ttattaaaaa taaaatagct tgaattaaat
     5161 cattgatatg aatccatgaa taccattgtt gaccagaacc taatttacca ccaatgtaat
     5221 attcgtatgg tagtttcatt gtttgtaacg caccgccttc attcgataaa attataccga
     5281 aacgaccgat gacaactcgt gtacctaatt gttcaaattg ttgtgcgaaa cgttcccatt
     5341 gatacacaat atctgataag aaatcaaaag gtaaagtttt ataaacttct gtgtaactca
     5401 taaataaatc aggaggatag taaccagtgg cactagcatt aaataaagct ttaggtgctt
     5461 tattacgtga tttaaacaat tcatataaag cttgcgtaga ttgaattcta cttagcatta
     5521 gcgtttgttt atattccggt gtccatcgtt tattcaatgt agcacctgct aagttgatga
     5581 ccacatcgat attttgagga actttgtgtt cccacccaga tttagcccag ttgacatatg
     5641 aaattttctt atcatttgaa atttggtcgt gtcgcgttaa tatcgtgata tgtgaatctg
     5701 attttttaat ttcattaact aattgagatc caaccatacc agtcccacca gtaattaagt
     5761 attgtttcat tatcattcac cccatgtaat tttgtattta gttactattt aataatcatt
     5821 attgttgttc aaaggttata cattatttag acaataatat gtcaataact ttttttgaat
     5881 tgtattttaa taaaaatgat ataagttata ataaaggtgt accttcgata acgaataaac
     5941 atctcttaaa agtatgtgta aaacgctgca tgatacaaac gaaggtaaaa atttgactcc
     6001 ctttagtagt ggacccgtac gttaatcgtg cgggtcgttt ttatttattt cttattccca
     6061 ttatacatca atttaaagca ttaatttttt aaacaaattt aagaatacat agtaatataa
     6121 caatctaaac ataaaaactt ttaacacaac acttaaacca atgctttaat tttcaatacg
     6181 tagctataat ttgttgtaaa atcaaaaagg ttaaaatgtt aattttcaaa aaaggctcaa
     6241 aatatgtttg atttagttat taaatgttaa gatatataag actactattt ctttgtaaaa
     6301 atgaatccga tttacgagtg agtaatagtg aaggcagttt taagttgaag aaggcaaaaa
     6361 gagtaaatgt ttattaatat ttgtagaaac taggtaagca aattagttgt gaaaatgtta
     6421 atggttgcgt gataatttct atatttaaat tagtttgaag tgagggagag tatgtcgaat
     6481 caaaattacg actacaataa aaatgaagat ggaagtaaga agaaaatgag tacaacagcg
     6541 aaagtagtta gcattgcgac ggtattgcta ttactcggag gattagtatt tgcaattttt
     6601 gcatatgtag atcattcgaa taaagctaaa gaacgtatgt tgaacgaaca aaagcaggaa
     6661 caaaaagaaa agcgtcaaaa agaaaatgca gaaaaagaga gaaagaaaaa gcaacaagag
     6721 gaaaaagagc agaatgagct agattcacaa gcaaaccaat atcagcaatt gccacagcag
     6781 aatcaatatc aatatgtgcc acctcagcaa caagcaccta caaagcaacg tcctgctaaa
     6841 gaagagaatg atgataaagc atcaaaggat gagtcgaaag ataaggatga caaagcatct
     6901 caagataaat cagatgataa tcagaagaaa actgatgata ataaacaacc agctcagcct
     6961 aaaccacagc cgcaacaacc aacaccaaag ccaaataata atcaacaaaa caatcaatca
     7021 aatcagcaag caaaaccaca agcaccacaa caaaatagcc aatcaacaac aaataaacaa
     7081 aataatgcta atgataagta gtatttagtc aaacaaaaat gaaccagtat gacagacaac
     7141 acaattaatt aggttgtctc gaatattggt tcttattttt ataattgtta attaggggag
     7201 agatgatact taaatagtta gttatttatt ttacggatag tgaaatttat tttgagtgag
     7261 gtgggacaga aatgatattt tcgcaaaatt tatttcgtcg tcccacccca acttccattg
     7321 cctgtagaaa ttggaaatcc aatttctcta tgttggggcc ccaccccaac ttgcattgcc
     7381 tgtagaaatt gggaggagcc aatttcacta tgttggggcc ccaccccaac tcgcattgcc
     7441 tgtagaattt catttcgaaa ttctctatgt tggggcccct gactttaatt gaaaaaagct
     7501 tgttacaagt gcattttcgt tcggttaact actactaatg tgactttttg gattctagag
     7561 cattgattta tgtcctagtc tcaaataata agcaaatgat tatcgagtca gtataagggt
     7621 atacatttga ctacagcgaa taaaataaaa cgttttgttg aataacaaat cgaaaatata
     7681 ttgcaagcgc tttatcaaat tatttagaaa atttaagttt tatgcttgca atttttgaaa
     7741 tagaatagta ctattgcaag tgtaaagagg ttaatttttg tcccacgcgg gacttaaaaa
     7801 ggcaaccact ggttgtgaca tatccttatt tacatttata aatataagga ggaggtagta
     7861 gtgaaagact tattgcaagc acagcaaaag cttataccgg atctcataga taaaatgtat
     7921 aaacgttttt ctattcttac tactatctca aaaaatcagc ctgtcggacg tcgaagttta
     7981 agcgaacata tggatatgac tgaacgtgta ctgcgttctg aaacagatat gcttaagaaa
     8041 caagatttga taaaagttaa gcctaccgga atggaaatta cagctgaagg tgagcaactg
     8101 atttcgcaat tgaaaggtta ctttgatatc tatgcagatg ataatcgtct gtcagaaggt
     8161 attaagaata aatttcaaat taaggaagtt catgttgttc ctggtgatgc tgataatagt
     8221 caatctgtta aaacagaatt aggtagacaa gcaggtcaat tacttgaagg catattacaa
     8281 gaagacgcga tagttgctgt aactggcgga tccacgatgg catgtgttag tgaagcaatt
     8341 catttattac catataatgt attcttcgta ccagccagag gtggactagg cgaaaatgtt
     8401 gtctttcagg caaacacaat tgcagccagt atggcacaac aagctggcgg ttattatacg
     8461 acgatgtatg tacctgataa tgtcagtgaa acaacatata atacattgtt gttagagcca
     8521 tcagtcataa acactttaga caaaattaaa caagcaaacg ttatattaca cggcattggt
     8581 gatgcgctga agatggcgca tcgacgtcaa tcacctgaaa aggtcattga acaacttcaa
     8641 catcatcaag ctgtcggaga ggcatttggt tattattttg atacacaagg tcaaattgtc
     8701 cataaggtta aaacaattgg acttcaatta gaagaccttg aatcaaaaga ctttattttt
     8761 gcagttgcag gaggcaaatc gaaaggtgaa gcaattaaag catacttgac gattgcaccc
     8821 aagaatacag tgttaatcac tgatgaagcc gcagcaaaga taatacttga ataagagata
     8881 aaaagtttaa tactttttaa atatcatttt aaaggaggcc attataatgg cagtaaaagt
     8941 agcaattaat ggttttggta gaattggtcg tttagcattc agaagaattc aagaagtaga
     9001 aggtcttgaa gttgtagcag taaacgactt aacagatgac gacatgttag cgcatttatt
     9061 aaaatatgac actatgcaag gtcgtttcac aggtgaagta gaggtagttg atggtggttt
     9121 ccgcgtaaat ggtaaagaag ttaaatcatt cagtgaacca gatgcaagca aattaccttg
     9181 gaaagactta aatatcgatg tagtattaga atgtactggt ttctacactg ataaagataa
     9241 agcacaagct catattgaag caggcgctaa aaaagtatta atctcagcac cagctactgg
     9301 tgacttaaaa acaatcgtat tcaacactaa ccaccaagag ttagacggtt ctgaaacagt
     9361 tgtttcaggt gcttcatgta ctacaaactc attagcacca gttgctaaag ttttaaacga
     9421 tgactttggt ttagttgaag gtttaatgac tacaattcac gcttacacag gtgatcaaaa
     9481 tacacaagac gcacctcaca gaaaaggtga caaacgtcgt gctcgtgcag cggcagaaaa
     9541 catcatccct aactcaacag gtgctgctaa agctatcggt aaagttattc ctgaaatcga
     9601 tggtaaatta gatggtggtg cacaacgtgt tcctgtagct acaggttcat taactgaatt
     9661 aacagtagta ttagaaaaac aagacgtaac agttgaacaa gttaacgaag ctatgaaaaa
     9721 tgcttcaaac gaatcattcg gttacactga agacgaaatc gtttcttcag acgttgtagg
     9781 tatgacttac ggttcattat tcgacgctac acaaactcgt gtaatgtcag ttggcgaccg
     9841 tcaattagtt aaagttgcag cttggtatga taacgaaatg tcatatactg cacaattagt
     9901 tcgtacatta gcatacttag ctgaactttc taaataattt tagtatagtt tttattcaaa
     9961 tacgctagtg ctcagaacta tttagcatta attaaagctt atgagtaagc ggggagcaca
    10021 aacgcttctc cgcttatttt tatataaaat ttcctaatta caaggaggaa acaccatggc
    10081 taaaaaaatt gtttctgatt tagatcttaa aggtaaaaca gtcctagtac gtgctgattt
    10141 taacgtacct ttaaaagacg gtgaaattac taatgacaac cgtatcgttc aagctttacc
    10201 tacaattcaa tacatcatcg aacaaggtgg taaaatcgta ctattttcac atttaggtaa
    10261 agtgaaagaa gaaagtgata aagcaaaatt aactttacgt ccagttgctg aagacttatc
    10321 taagaaatta gataaagaag ttgttttcgt accagaaaca cgcggcgaaa aacttgaagc
    10381 tgctattaaa gaccttaaag aaggcgacgt attattagtt gaaaatacac gttatgaaga
    10441 tttagacggt aaaaaagaat ctaaaaatga tccagaatta ggtaaatact gggcatcttt
    10501 aggtgatgtg tttgtaaatg atgcttttgg tactgcgcat cgtgagcatg catctaatgt
    10561 tggtatttct acacatttag aaactgcagc tggattctta atggataaag aaattaagtt
    10621 tattggcggc gtagttaacg atccacataa accagttgtt gctattttag gtggagcaaa
    10681 agtatctgac aaaattaatg tcatcaaaaa cttagttaac atagctgata aaattatcat
    10741 cggcggaggt atggcttata ctttcttaaa agcgcaaggt aaagaaattg gtatttcatt
    10801 attagaagaa gataaaatcg acttcgcaaa agatttatta gaaaaacatg gtgataaaat
    10861 tgtattacca gtagacacta aagttgctaa agaattttct aatgatgcca aaatcactgt
    10921 agtaccatct gattcaattc cagcagacca agaaggtatg gatattggac caaacactgt
    10981 aaaattattt gcagatgaat tagaaggtgc gcacactgtt gtatggaatg gacctatggg
    11041 tgtattcgag ttcagtaact ttgcacaagg tacaattggt gtatgtaaag caattgcaaa
    11101 ccttaaagat gcaattacga ttatcggtgg cggtgattca gctgcagcag caatctcttt
    11161 aggttttgaa aatgacttca ctcatatttc aactggtggc ggcgcgtcat tagagtacct
    11221 agaaggtaaa gaattgcctg gtatcaaagc aatcaataat aaataataaa gtgatagttt
    11281 aaagtgatgt ggcatgtttg tttaacattg ttacgggaaa acagtcacaa gatgacatcg
    11341 tgtttcatca cttttcaaaa atatttacaa aacaaggagt gtctttaatg agaacaccaa
    11401 ttatagctgg taactggaaa atgaacaaaa cagtacaaga agcaaaagac ttcgtcaatg
    11461 cattaccaac attaccagat tcaaaagaag tagaatcagt aatttgtgca ccagcaattc
    11521 aattagatgc attaactact gcagttaaag aaggaaaagc acaaggttta gaaatcggtg
    11581 ctcaaaatac gtatttcgaa gataatggtg cgttcacagg tgaaacgtct ccagttgcat
    11641 tagcagattt aggcgttaaa tacgttgtta tcggtcattc tgaacgtcgt gaattattcc
    11701 acgaaacaga tgaagaaatt aacaaaaaag cgcacgctat tttcaaacat ggaatgactc
    11761 caattatatg tgttggtgaa acagacgaag agcgtgaaag tggtaaagct aacgatgttg
    11821 taggtgagca agttaagaaa gctgttgcag gtttatctga agatcaactt aaatcagttg
    11881 taattgctta tgaaccaatc tgggcaatcg gaactggtaa atcatcaaca tctgaagatg
    11941 caaatgaaat gtgtgcattt gtacgtcaaa ctattgctga cttatcaagc aaagaagtat
    12001 cagaagcaac tcgtattcaa tatggtggta gtgttaaacc taacaacatt aaagaataca
    12061 tggcacaaac tgatattgat ggggcattag taggtggcgc atcacttaaa gttgaagatt
    12121 tcgtacaatt gttagaaggt gcaaaataat catggctaag aaaccaactg cgttaattat
    12181 tttagatggt tttgcgaacc gcgaaagcga acatggtaat gcggtaaaat tagcaaacaa
    12241 gcctaatttt gatcgttatt acaacaaata tccaacgact caaatcgaag cgagtggctt
    12301 agatgttgga ctacctgaag gacaaatggg taactcagaa gttggtcata tgaatatcgg
    12361 tgcaggacgt atcgtttatc aaagtttaac tcgaatcaat aaatcaattg aagacggtga
    12421 tttctttgaa aatgatgttt taaataatgc aattgcacac gtgaattcac atgattcagc
    12481 gttacacatc tttggtttat tgtctgacgg tggtgtacac agtcattaca aacatttatt
    12541 tgctttgtta gaacttgcta aaaaacaagg tgttgaaaaa gtttacgtac acgcattttt
    12601 agatggccgt gacgtagatc aaaaatccgc tttgaaatac atcgaagaga ctgaagctaa
    12661 attcaatgaa ttaggcattg gtcaatttgc atctgtgtct ggtcgttatt atgcaatgga
    12721 tcgtgacaaa cgttgggaac gtgaagaaaa agcttacaat gctattcgta attttgatgc
    12781 cccaacttat gcaactgcca aagaaggtgt agaagcaagc tataatgagg gcttaactga
    12841 cgaattcgta gtaccattca tcgttgagaa tcaaaatgac ggtgttaatg atggagatgc
    12901 agtgatcttc tataatttcc gacctgatag agcagcgcaa ttatcggaaa tttttgcgaa
    12961 cagagcattc gaaggcttta aagttgaaca agttaaagac ttattctatg caacattcac
    13021 taagtataat gacaatatcg atgcggctat cgtcttcgaa aaagttgatt taaataatac
    13081 aattggtgaa attgcacaaa ataacaattt aactcaatta cgtattgcag aaactgaaaa
    13141 ataccctcac gttacttact ttatgagtgg tggacgtaac gaggaattta aaggtgaacg
    13201 ccgtcgttta attgattcac ctaaagttgc aacgtatgac ttgaaaccag aaatgagtgc
    13261 ttatgaagtt aaagatgcat tattagaaga gttaaataaa ggtgacttgg acttaattat
    13321 tttaaacttt gctaaccctg atatggttgg acatagtggt atgcttgagc cgacaatcaa
    13381 agcaatcgaa gcggttgatg aatgtttagg agaagtggtt gataagattt tagacatgga
    13441 cggttatgca attattactg ctgaccatgg taactctgat caagtattga cggatgatga
    13501 tcaaccaatg actacgcata caacgaaccc agtaccagtg attgtaacaa aagaaggcgt
    13561 tacacttaga gaaactggtc gcttaggtga cttagcacct acattattag atttattaaa
    13621 tgtagaacaa cctgaagata tgacaggtga atctttaatt aaacactaat attgtaaaag
    13681 atgttaagta aacgcttaat gacacttatt ttttgaaaat aatagtaata tcattttgtt
    13741 aaatgaaaga ataaagctat aataattata gaataactat ttaaaggaga ttataaacat
    13801 gccaattatt acagatgttt acgctcgcga agtcttagac tctcgtggta acccaactgt
    13861 tgaagtagaa gtattaactg aaagtggcgc atttggtcgt gcattagtac catcaggtgc
    13921 ttcaactggt gaacacgaag ctgttgaatt acgtgatgga gacaaatcac gttatttagg
    13981 taaaggtgtt actaaagcag ttgaaaacgt taatgaaatc atcgcaccag aaattattga
    14041 aggtgaattt tcagtattag atcaagtatc tattgataaa atgatgatcg cattagacgg
    14101 tactccaaac aaaggtaaat taggtgcaaa tgctatttta ggtgtatcta tcgcagtagc
    14161 acgtgcagca gctgacttat taggtcaacc actttacaaa tatttaggtg gatttaatgg
    14221 taagcagtta ccagtaccaa tgatgaacat cgttaatggt ggttctcact cagatgctcc
    14281 aattgcattc caagaattca tgattttacc tgtaggtgct acaacgttca aagaatcatt
    14341 acgttggggt actgaaattt tccacaactt aaaatcaatt ttaagcaaac gtggtttaga
    14401 aactgcagta ggtgacgaag gtggtttcgc tcctaaattt gaaggtactg aagatgctgt
    14461 tgaaacaatt atccaagcaa tcgaagcagc tggttacaaa ccaggtgaag aagtattctt
    14521 aggatttgac tgtgcatcat cagaattcta tgaaaatggt gtatatgact acagtaagtt
    14581 cgaaggcgaa cacggtgcaa aacgtacagc tgcagaacaa gttgactact tagaacaatt
    14641 agtagacaaa tatcctatca ttacaattga agacggtatg gacgaaaacg actgggatgg
    14701 ttggaaacaa cttacagaac gtatcggtga ccgtgtacaa ttagtaggtg acgatttatt
    14761 cgtaacaaac actgaaattt tagcaaaagg tattgaaaac ggaattggta actcaatctt
    14821 aattaaagtt aaccaaatcg gtacattaac tgaaacattt gatgcaatcg aaatggctca
    14881 aaaagctggt tacacagcag tagtttctca ccgttcaggt gaaacagaag atacaacaat
    14941 tgctgatatt gctgttgcta caaacgctgg tcaaattaaa actggttcat tatcacgtac
    15001 tgaccgtatt gctaaataca atcaattatt acgtatcgaa gatgaattat ttgaaactgc
    15061 taaatatgac ggtatcaaat cattctataa cttagataaa taattttctt tataatcaaa
    15121 tgctgacata attttagttg aggattatta tgacggtata aattaaataa agattttgag
    15181 ttcacgctta aataagttca cgcttaaatt tatagcctgc cacagagttg agactgtggt
    15241 aggtttttta ttttgaagta ttaatcataa cagactaata atcatgaggt aactaataac
    15301 acatatttaa cttgtattct taaactggta taataaattt atgttgaaat gaatattgta
    15361 tgacagggta ttcactttta ttaaaaggta aaattaaata aaggttttat agaacgtatt
    15421 taaatatatg aggagtaaac aaatggctga tagaacgaat aaagaaatta aaacaggacg
    15481 ctttattgca actgcatcaa tcgtattctc aatattattg attattcatt actttgtttc
    15541 gttggataat gcgactgcca aagcattact taatttaacg aatcaaaaca cttcagataa
    15601 agcgattgat tacattttaa acagctttag attcactggt attatgtata ttttggctta
    15661 tctagcaggc ttcatcactt tttggaatcg acatacttat gtgtggtggt ttatgtttgc
    15721 agtttatgta tcaaatagtt tgtttacgtt gattaattta tcaatcacaa ttcaagcaat
    15781 aaaagctgca cacggtgcgt acttaacatt gccaatttta attgttatta taggttcggt
    15841 tgcattagcg atttatatgc ttgttgtttc tatcaaacgt aaaagtacat ttaatcgcta
    15901 gaaaattgat tttaacaata aaaatatgat atactacttg tcgtatataa ggaacggagg
    15961 acaatttatg catacatttt taatcgtatt attaatcatt gattgtattg cattaataac
    16021 tgttgtacta ctccaagaag gtaaaagcag tggactttca ggtgccatca gtggtggtgc
    16081 tgagcagtta ttcggtaaac aaaaacaacg tggcgtcgat ttattcttaa atagattaac
    16141 aattatttta tcaatattat tttttgtact tatgatttgc ataagttatc ttggtatgta
    16201 aggtccggcg atgtaaatgt cgggcttttt tatttataat taagaatgta atagtttaac
    16261 aataagctat gtaaaatata tagcctagtt aagtatgcaa agggagcgtt agatttatgc
    16321 agataaaatt accaaaacct ttcttttttg aggaaggtaa acgtgccgtg ttattactac
    16381 atggttttac aggcaattcg tctgatgttc gtcaattagg tcgattttta caaaagaaag
    16441 gttatacatc atatgcaccg caatatgaag gccacgcggc accaccagat gaaatactga
    16501 aatctagtcc tttcgtttgg tttaaagatg cgttagatgg ttatgattat cttgttgaac
    16561 aaggttatga tgaaattgtt gttgctggtc tatcattagg tggggatttt gctttaaaat
    16621 taagcttaaa tagagatgta aagggtattg taacgatgtg tgctcctatg ggtggcaaaa
    16681 ctgaaggtgc catttatgaa ggctttttag aatatgcacg caattttaaa aagtatgaag
    16741 gtaaagatca agagactatt gataatgaaa tggatcattt taaaccaact gaaactttaa
    16801 aagaactaag tgaagcatta gatacgatta aagagcaagt tgatgaagtg ttggatccta
    16861 ttttagtgat tcaagcagaa aacgacaata tgattgatcc acaatccgca aattatatat
    16921 atgaccatgt agattctgat gacaaaaata tcaagtggta cagtgaatct ggacatgtta
    16981 ttacgattga taaagagaaa gaacaagtat ttgaagatat ttatcaattt ttagagtcat
    17041 tagactggtc agaataaaaa gagattttaa cattagaaag gaggggcata atgaatttaa
    17101 agcaatctat agaagagatt attaatcaac ctgaatatga acctatgtca gtgtcagatt
    17161 ttcaagatgc attaggttta agcagtgccg actcgtttag agatttaatt aaggtgcttg
    17221 tggagttaga acaatcagga ttaatcgaac gtacaaaaac agacagatac caaaaaaagc
    17281 atagttatag aggtcaatca aaattgataa aaggaacgtt aagtcaaaat aaaaaaggct
    17341 ttgcattctt aagacctgaa gatgaggata tggaagatat atttattccc ccgacgaaaa
    17401 ttaatcgtgc cttggatgga gatactgtta ttgtagaaat ccatcaatca aaaggtgaac
    17461 ataaaggtaa aatcgaaggg gaagttaagt cgattgagaa gcattctgta actcaagttg
    17521 ttggtacgta tagtgaagct agacattttg gctttgttat tccggatgat aaacgtatta
    17581 tgcaagatat tttcattcct aaaggtcaaa gtttaggcgc agtcgatggt cataaggtac
    17641 ttgtacaaat tactaagtat gctgatggtt cagataatcc agaaggacat atttctgcta
    17701 ttttaggaca taaaaatgat cctggcgtag atattttatc tattatctat caacatggca
    17761 tagaaattga atttcctgat gaagtgttac aagaagctga agcagtacct gatcatattg
    17821 aaaatactga aattaaaggc cgtcatgatt tacgtgatga attgacaatc acaattgatg
    17881 gtgctgatgc taaagactta gatgacgcaa ttagtgttaa aaagttagcg aacggtaata
    17941 cgcaattaac tgtaagtatt gctgatgtca gctattatgt aacagaaggt tctgcattgg
    18001 ataaagaggc atatgataga gcgacaagtg tatatcttgt tgaccgtgta attccaatga
    18061 ttccacatcg attaagtaat ggtatttgtt cattgaatcc taatgttgat cgtttaactc
    18121 taagctgtcg catggaaatc gatgctagtg gtcgcgttgt taaacatgaa atttttgata
    18181 gtgttataca ttctgattat cgaatgacgt atgatgcggt aaatcagatt attactgaaa
    18241 aggatcctaa cattcgcgaa caatataatg aaattacgcc tatgctagat ttagcacaag
    18301 atttatctaa tcgtttgatt caaatgagaa aacgacgtgg tgaaatcgat tttgatatta
    18361 gtgaagcaaa agtattagtt aacgaagacg gtataccaac agatgttcaa ttaagacaac
    18421 gtggcgaggg tgaacgtcta attgaatcat ttatgttaat tgcaaatgaa acagttgctg
    18481 aacattttag taagttagat gtacctttta tttaccgagt gcatgagcaa cctaaatcag
    18541 atcgcttaag acaattcttt gattttatta caaactttgg catcatgatt aagggtactg
    18601 gcgaagatat tcatccaaca acacttcaaa aggttcaaga agaagtagaa ggtcgacctg
    18661 aacaaatggt catttcaaca atgatgttgc gttcaatgca acaagcgcat tatgatgatg
    18721 tgaacttggg acattttggc ttatcagctg aatattatac gcattttaca tcaccaatta
    18781 gacgttatcc tgatttaaca gttcatcgtt taatccgtaa gtatttaatt gagaaatcaa
    18841 tggataacaa agaagtgaag cgttgggaag acaaattgcc tgagttagct gaacatactt
    18901 ctaaacgtga acgtcgtgct attgaggcag aacgtgatac tgatgaattg aaaaaagcag
    18961 aatatatgat tcaacatatt ggtgatgaat ttgaaggtat tgtcagctca gtagctaact
    19021 tcggtatgtt cattgaattg ccaaatacga tagaaggtat ggttcatatt gcgaatatga
    19081 ctgatgatta ttaccgtttt gaagagcgtc aaatggcatt aattggtgag cgtcaagcta
    19141 aagtatttag aattggtgac acagttaagg ttaaagtgac gcatgttgat gtagatgaac
    19201 gattaattga ttttcaaatt gtaggtatgc ctttaccgaa aaatgatcga tcacagcgcc
    19261 cagcgcgagg taagacaatt caagccaaaa cgcgtggtaa atcattagat aaatcaaaat
    19321 ctgatgataa gggtcgtaag aaaaaaggta agcaacgtaa aggtaaaaac caacgtaata
    19381 atgataaatc aggtaatagt aagcataagc cattttataa agataaaagt gtgaaaaaga
    19441 aagcacgtcg taagaaaaaa taagcagcaa tgaggtgagt atgaatggct aagaagaaat
    19501 caccaggtac attagcggaa aatcgtaagg caagacatga ttataatatt gaagatacga
    19561 ttgaagcggg aattgtattg caaggcacag aaataaaatc aattcgccga ggtagtgcta
    19621 accttaaaga tagttatgcg caagttaaaa acggtgaaat gtatttgaat aatatgcata
    19681 tagcaccata cgaagaaggg aatcgtttta atcacgatcc tcttcgttct cgaaaattat
    19741 tattgcacaa gcgtgaaatc attaaattgg gtgatcaaac acgtgagatt ggttattcga
    19801 ttgtgccgtt aaagctttat ttgaagcatg gacattgtaa agtattactt ggtgttgcac
    19861 gaggtaagaa aaaatatgat aaacgtcaag ctttgaaaga aaaagcagtc aaacgagatg
    19921 ttgcgcgcga tatgaaagcc cgttattaag cgatttagtt gcttaatcgg gctatatttg
    19981 atatagttat atgtgctttt gtaaattaca aaagtatgat ttgtttgatt tattatttcg
    20041 gggacgttca tggattcgac aggggtcccc cgagctcatt aagcgtgtcg gagggttgtc
    20101 ttcgtcatca acacacacag tttataataa ctggcaaatc aaacaataat ttcgcagtag
    20161 ctgcctaatc gcactctgca tcgcctaaca gcatttccta tgtgctgtta acgcgattca
    20221 accttaatag gatatgctaa acactgccgt ttgaagtctg tttagaagaa acttaatcaa
    20281 actagcatca tgttggttgt ttatcacttt tcatgatgcg aaacctatcg ataaactaca
    20341 cacgtagaaa gatgtgtatc aggacctttg gacgcgggtt caaatcccgc cgtctccata
    20401 tttgtagcct acagcctttg tggttgtggg cttttttatt ttgtgttttt caggggataa
    20461 tgcattgcag aatttgttgt gagtattgat atagcagtgt ttgtataggt gtttatttga
    20521 tggaggaaag agtaataagt gattatgaat tagtttttga gatataaggg gacagtgatg
    20581 tgtgtcaaat aagtgtcaaa aaagttggat tctgagtttt acattcaaca ttgttcatga
    20641 agaaacttct ttatacgcaa aaaattctcc atgttatata tgtcaatata aaaatgtgaa
    20701 tcgtctacac ttaattggat aaatggctac tgaaaaagaa cttttcattt ttgttacgtc
    20761 actaagtggg tgtagttata aagagatgag ccgagttttg atattttcat tagaatcaat
    20821 atgcctatta acacaatcag caatagttga cgagacggaa ataaaagaag tcgtagttaa
    20881 gaaatgcatt tcacaacata ccattgtagc catttttatt gttttggatg ataaactctt
    20941 tttggaattt ttagttttta taatttgcaa ctacactact tcttttacta atattaatgt
    21001 ctaagtaatc gataaaaaat tttccattga ataaatgaga agttaaaaac tttacttaac
    21061 ctttctcatt gcattttcct attcacgatt ttaagaaccc aacatactac aaacgaattt
    21121 taaaaggcga gagtaaagct tacttgttta ttatacatat ttaaaatcca agagtcag
//
LOCUS       DAMQWL010000037        21053 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.037, whole genome shotgun sequence.
ACCESSION   DAMQWL010000037 DAMQWL010000000
VERSION     DAMQWL010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 21053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21053
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.037"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(133..1137)
                     /locus_tag="PF788_001237"
     CDS             complement(133..1137)
                     /locus_tag="PF788_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDG6303502.1"
                     /translation="MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRL
                     VANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLK
                     FRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTAR
                     HHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKV
                     TSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQI
                     GTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
                     "
     gene            complement(1121..1831)
                     /locus_tag="PF788_001238"
     CDS             complement(1121..1831)
                     /locus_tag="PF788_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allophanate hydrolase subunit 1"
                     /protein_id="HDG6303503.1"
                     /translation="MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIE
                     IVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYG
                     SKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSK
                     QKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFR
                     PINENELEVGAFKDVNHN"
     gene            complement(1919..2125)
                     /locus_tag="PF788_001239"
     CDS             complement(1919..2125)
                     /locus_tag="PF788_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303504.1"
                     /translation="MIIVYIVLLLILVYVNYRLVNRLLSENRIYVVRLIATITTVISF
                     ILVYALIHELMPFVVRAMDLMYHQ"
     gene            complement(2191..2799)
                     /locus_tag="PF788_001240"
     CDS             complement(2191..2799)
                     /locus_tag="PF788_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDG6303505.1"
                     /translation="MQLFETMKIDNGHIPRLTYHTNRIKCSSERLNFKFDEHAWRNEL
                     NDVTTKYHSGQYRLKIVLNAESKFETIVSPLPEKSSFTAKFQVLPKVVNPTFIKNKTT
                     ERKHLAHNHETDLILLTSEDGKVLEFDIGNIVIEEDGKWYTPSYKDDFLKGCMRDYLI
                     DSDKLVEKDFNKNELIYKYHNNEIRLFLINSLREVADVHLCL"
     gene            complement(2799..3950)
                     /locus_tag="PF788_001241"
     CDS             complement(2799..3950)
                     /locus_tag="PF788_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDG6303506.1"
                     /translation="MRIEYNYRYYLTENEYKQYHIQLKGFIKKYVATKLADVGEVIHF
                     AQAQQRQGRYVSLYLSYEAAKYFNHAMCTHSLAKDDIYAAAYSFEKAESINSTYEHQT
                     SYVSKYHFSFVESSEVMMTNIKRVQQAIVEGETYQVNYTARLTDNIYYPISTLYERLT
                     QFSNGNYTALLQTDEIQVASISPELFFQKGQFNNVDNVIISKPMKGTMPRGKTEAEDQ
                     QYYKTLQTSSKDRAENVMIVDLLRNDIGRISQSGSIKVYKLFFIEAYKTVFQMTSMVS
                     GTLKNNTDLTQILTSLFPCGSITGAPKLNTMKYIKQLESSPRGIYCGAIGLLLPTEDD
                     KMIFNIPIRTIEYKYGQAIYGVGAGITIDSKPKDEVNEFYAKTKILEML"
     gene            complement(3934..4527)
                     /locus_tag="PF788_001242"
     CDS             complement(3934..4527)
                     /locus_tag="PF788_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDG6303507.1"
                     /translation="MILVIDNNDSFTYNLIDYIKTQTKLTVQVVGIDNLLIEDVINMK
                     PKAIVISPGPGNPDDYPILNEVLEQFYQRVPILGVCLGFQCIVSYFGGNIIHGYHPVH
                     GHTTQLRHTNEGIFQGLPQNFNVMRYHSLIADGATFPNCLKITAKNDEAIIMAFEHIR
                     FPVFGVQYHPESILSEYGYRQVELFLSKVGDYCENRI"
     gene            4878..5546
                     /gene="queC"
                     /locus_tag="PF788_001243"
     CDS             4878..5546
                     /gene="queC"
                     /locus_tag="PF788_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDG6303508.1"
                     /translation="MESVLNNEKAIVVFSGGQDSTTCLFYAKKHFKEVELVTFNYGQR
                     HDTEIEVAKQIAQDQGMKHHVLDMSLLSQLTPNALTQHDMEITNNEDGIPNTFVPARN
                     LLFLSFAGALAYQIGAKHIITGVCETDFSGYPDCRDSFIKSMNVTLSLAMDKDFVIHT
                     PLMWLNKAETWKLSDELEVLDYIRTKTLTCYNGIIGDGCGECPACHLRQRGLNQYLES
                     KGAL"
     gene            5548..5967
                     /gene="queD"
                     /locus_tag="PF788_001244"
     CDS             5548..5967
                     /gene="queD"
                     /locus_tag="PF788_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDG6303509.1"
                     /translation="MLQQIYPSTTHPYQFELNKDFNFSAAHHIPCEEAGICQNVHGHT
                     YFVNLTIVGDKLDDTGFLVNFSHLKKMIHGKFDHQLLNNLPAFKNKIPSTEIVAETIY
                     QIVKENLASLEHQPKCIQVFVRETPTSYVVFRPKEQV"
     gene            5971..6684
                     /gene="queE"
                     /locus_tag="PF788_001245"
     CDS             5971..6684
                     /gene="queE"
                     /locus_tag="PF788_001245"
                     /EC_number="4.3.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDG6303510.1"
                     /translation="MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDYRCSWCDSAF
                     TWDGSAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGI
                     FSALETQGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVF
                     DDKDYDFAKMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKLLERYEQLVDLVMQSNDMN
                     HVYVLPQLHTLLWSNKKGV"
     gene            6783..7367
                     /locus_tag="PF788_001246"
     CDS             6783..7367
                     /locus_tag="PF788_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303511.1"
                     /translation="MIVYILINIAIVVLITGFNLYRHQMQHLSLSAMLLSITINAFIN
                     TFIIDKYNFITLCTITMFIIWTILQFYIDKKLKPVYITDQKFIAIILTIVVSLTQRVT
                     DFSSTQSIYMSIPFLAPAIFIIGGIMLFISTFNSLDETAENNNKIKKLMIKGLIIINI
                     SFIVMMVLTPYWYLYLIVYLIFLLFLLWQKVYKF"
     gene            7647..8087
                     /locus_tag="PF788_001247"
     CDS             7647..8087
                     /locus_tag="PF788_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DM13 domain-containing protein"
                     /protein_id="HDG6303512.1"
                     /translation="MNTKYFLAAGAVITTLALGACGNSNSQDQGNKTEQKTKSEDSNV
                     KTDKTKHLTGTFSSKNGETVEGKAEIKNGKLMLTNYKSSKGPDLYVYLTKNGDIKNGK
                     EIAMVDYDKEKQTFDLKNVDLSKYDEVTIYCKKAHVIFGGAKLK"
     gene            8429..8902
                     /locus_tag="PF788_001248"
     CDS             8429..8902
                     /locus_tag="PF788_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDG6303513.1"
                     /translation="MNKLLLLVTFIIRVGSGIVMLMQGYEKLTGGFTLKGLVPVIANN
                     TDSPEWYKWFFANIVAHTTSLFDIVVPLGEIAIGLGLIFGVFAYAASFFGAFVMINYI
                     LADMIFTYPLQLTFFILLLMSHSLLKQISLKEIINYFRGRKNRGEKIDDPLTDRG"
     gene            8877..9563
                     /locus_tag="PF788_001249"
     CDS             8877..9563
                     /locus_tag="PF788_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6303514.1"
                     /translation="MTHLLIVDDEQDIVDICQTYFEYEGYKVTTTTSGKEAISLLSND
                     IDIMVLDIMMPEVNGYDIVKEMKRQKLDIPFIYLTAKTQEHDTIYALTLGADDYVKKP
                     FSPRELVLRINNLLTRMKKYHHQPVEQLSFDELTLINLSKVVTVNGHEVPMRIKEFEL
                     LWYLASRENEVISKSELLEKVWGYDYYEDANTVNVHIHRIREKLEKESFTTYTITTVW
                     GLGYKFERSR"
     gene            9563..10618
                     /gene="saeS"
                     /locus_tag="PF788_001250"
     CDS             9563..10618
                     /gene="saeS"
                     /locus_tag="PF788_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     SaeS"
                     /protein_id="HDG6303515.1"
                     /translation="MVLSIRSQIIIGVVSSILLTSTILAIAYILMWFNGHMTLTLTLT
                     TIITSCLTLLICSIFINPLIQKIKQFNIKTKQFANGNYASNDKTFNSPKEIYELNQSF
                     NKMASEITQQMNQIKSEQQEKTELIQNLAHDLKTPLASIMSYSEGLRDGIITKDHEIK
                     ESYDILIKQANRLSTLFDDMTHIITLNTGKTYPPELIQLDQLLVSILQPYEQRIKHEN
                     RTLEVNFCNEIDAFYQYRTPLERILTNLLDNALKFSNVGSRIDINISENEDQDTIDIA
                     ISDEGIGIIPELQERIFERTFRVENSRNTKTGGSGLGLYIANELAQQNNAKISVSSDI
                     DVGTTMTVTLHKLDITS"
     gene            complement(10690..11673)
                     /gene="csbB"
                     /locus_tag="PF788_001251"
     CDS             complement(10690..11673)
                     /gene="csbB"
                     /locus_tag="PF788_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoteichoic acid-specific glycosylation protein
                     CsbB"
                     /protein_id="HDG6303516.1"
                     /translation="MKIRVVIPCFNEGEVITQTHQQLTEILSQDSSVKGYDYNMLFID
                     DGSTDTTIDEMQHLATIDRHVSFISFSRNFGKEAAMIAGYQHSTEFDAVIMIDCDLQH
                     PPEYIPKMVEGFMEGYDQVIAKRDRSGENFSRKTLSHLYYKLVNCFVEEVQFDDGVGD
                     FRLLSQRAVKSIASLEEYNRFSKGLFEWIGYNTKVFTYQNVERQKGESKWSFKKLFNY
                     GIDGLISFNSKPLRMMIYLGLFIFSISVLYIIYLFINIMISGVNIPGYFSTIAAILLL
                     GGIQLISIGVVGEYIGRIYYEVKARPKYIIQATNLSSLENDEKDTHKVYSK"
     gene            complement(11805..12644)
                     /locus_tag="PF788_001252"
     CDS             complement(11805..12644)
                     /locus_tag="PF788_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDG6303517.1"
                     /translation="MLNEIQILNNGYPMPSVGLGVYKISDEDMTKVVNAAIDAGYRAF
                     DTAYFYDNEASLGRALKDNGVDREDLFITTKLWNDYQGYEKTFEYFNKSIENLQTDYL
                     DLFLIHWPCEADGLFLETYKAMEELYEQGKVKAIGVCNFNVHHLEKLMAQSSIKPMVN
                     QIEVHPYFNQQELQEFCDRHDIKVTAWMPLMRNRGLLDDPVIVKIAEKYHKTPAQVVL
                     RWHLAHNRIIIPKSQTPKRIQENIDILDFNLELTEVAEIDALNRNARQGKNPDDVKIG
                     DLK"
     gene            complement(12866..14215)
                     /locus_tag="PF788_001253"
     CDS             complement(12866..14215)
                     /locus_tag="PF788_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDG6303518.1"
                     /translation="METSTIISLIIFILLIALTTVFVGSEFALVKIRATRIEQLADEG
                     NKPAKIVKKMIANLDYYLSACQLGITVTSLGLGWLGEPTFEKLLHPIFEAINLPTALT
                     TTISFAVSFIIVTYLHVVLGELAPKSIAIQHTEKLALVYARPLFYFGNIMKPLIWLMN
                     GSARVIIRMFGVNPDAQTDAMSEEEIKIIINNSYNGGEINQTELAYMQNIFSFDERHA
                     KDIMVPRTQMITLNEPFNVDELLETIKEHQFTRYPITDDGDKDHIKGFINVKEFLTEY
                     ASGKTIKIANYIHELPMISETTRISDALIRMQREHVHMSLIIDEYGGTAGILTMEDIL
                     EEIVGEIRDEFDDDEVNDIVKIDNKTFQVNGRVLLDDLTEEFGIEFDDSEDIDTIGGW
                     LQSRNTNLQKDDYVDTTYDRWVVSEIDNHQIIWVILNYEFNEARPTIGQSDEDEKSE"
     gene            complement(14436..15617)
                     /gene="nagA"
                     /locus_tag="PF788_001254"
     CDS             complement(14436..15617)
                     /gene="nagA"
                     /locus_tag="PF788_001254"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDG6303519.1"
                     /translation="MSELIIYNGKVYTEDGKIDNGYIHVKDGQIVAIGEVDDKAAIDN
                     DTTNKIQVIDAKGHHVLPGFIDIHIHGGYGQDAMDGSYDGLKYLSENLLSEGTTSYLA
                     TTMTQSTDKIDNALTNIAKYEAEQDVHNAAEIVGIHLEGPFISENKVGAQHPQYVVRP
                     FIDKIKHFQETANGLIKIMTFAPEVEGAKEALETYKDDIIFSIGHTVATYEEAVEAVE
                     RGAKHVTHLYNAATPFQHREPGVFGAAWLNDALHTEMIVDGTHSHPASVAIAYRMKGN
                     ERFYLITDAMRAKGMPEGEYDLGGQKVTVQSQQARLANGALAGSILKMNHGLRNLISF
                     TGDTLDHLWRVTSLNQAIALGIDDRKGSIKVNKDADLVILDDDMNVKSTIKQGKVHTF
                     S"
     gene            complement(15925..17883)
                     /locus_tag="PF788_001255"
     CDS             complement(15925..17883)
                     /locus_tag="PF788_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDG6303520.1"
                     /translation="MRVTELLTKDTIAMDLMANDKNGVIDELVNQLDKAGKLSDVASF
                     KEAIHNRESQSTTGIGEGIAIPHAKVAAVKSPAIAFGKSKAGVDYQSLDMQPAHLFFM
                     IAAPEGGAQTHLDALAKLSGILMDENVREKLLHASSPEEVLAIIDEADDEVTKEEEAE
                     AEAQQVATAEQSSKQSNEPYVLAVTACPTGIAHTYMARDALKKQADKMGIKIKVETNG
                     SSGIKNHLTEQDIENATGIIVAADVHVETDRFDGKNVVEVPVADGIKRPEELINKALD
                     TSRKPFVARDGQRKGNSNDSQEKLSPGKAFYKHLMNGVSNMLPLVISGGILMAIVFLF
                     GANSFNPKSSEYNAFAEQLWNIGSKSAFALIIPILSGFIARSIADKPGFASGLVGGML
                     AISGGSGFIGGIIAGFLAGYLTQGVKAMTRKLPQALEGLKPTLIYPLLTVTATGLLMI
                     YAFNPPASWLNHLLLDGLNNLSGSNIVLLGLVIGAMMAIDMGGPFNKAAYVFATGALI
                     EGNAAPITAAMIGGMIPPLAIATAMLIFRRKFTKEQRGSIIPNYVMGMSFITEGAIPF
                     AAADPLRVIPSMMIGSGIGGAIALGLGSRITAPHGGIIVIVGTDGAHLLQTLIALLVG
                     TLVSALIYGLIKPKLTETEIEASKSMDE"
     gene            complement(17889..18809)
                     /gene="pfkB"
                     /locus_tag="PF788_001256"
     CDS             complement(17889..18809)
                     /gene="pfkB"
                     /locus_tag="PF788_001256"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDG6303521.1"
                     /translation="MIYTVTFNPSIDYVIFTNDFKIDGLNRATATYKFAGGKGINVSR
                     VLKTLDVESTALGFAGGFPGKFIIDTLNNSAIQSNFIEVDEDTRINVKLKTGQETEIN
                     APGPHITSTQFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQIAQITAQTGAKLVV
                     DAEKELAESVLPYHPLFIKPNKDELEVMFNTTVNSDTDVIKYGRLLVDKGAQSVIVSL
                     GGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLTIEKAFQQAVACG
                     TATAFDEDLATRDAIEKIKSQVTISVLDGE"
     gene            complement(18806..19570)
                     /locus_tag="PF788_001257"
     CDS             complement(18806..19570)
                     /locus_tag="PF788_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDG6303522.1"
                     /translation="MMIITEKRHELILEELSHKDFLTLQELIDRTGCSASTIRRDLSK
                     LQQLGKLQRVHGGAMLKENRMVEANLTEKLATNLDEKKMIAKIAANQINDNECLFIDA
                     GSSTLELIKYIQAKDIIVVTNGLTHVEALLKKGIKTIMLGGQVKENTLATIGSSAMEI
                     LRRYCFDKAFIGMNGLDIELGLTTPDEQEALVKQTAMSLANQSFVLIDHSKFNKVYFA
                     RVPLLESTTIITSEKALNQESLKEYQQKYHFIGGTL"
     gene            complement(19820..20302)
                     /gene="ybaK"
                     /locus_tag="PF788_001258"
     CDS             complement(19820..20302)
                     /gene="ybaK"
                     /locus_tag="PF788_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HDG6303523.1"
                     /translation="MAKNKKTNAMRMLDRAKIKYEVHSFEVPEEHLSGQEVAELIQAN
                     VKTVFKTLVLENTKHEHFVFVIPVSETLDMKKAAALVGEKKLQLMPLDNLKNVTGYIR
                     GGCSPVGMKTLFPTVVDKSCENYSHISVSGGLRTMQITIAVEDLITITKGKIGAVIHE
                     "
     gene            complement(20476..20928)
                     /locus_tag="PF788_001259"
     CDS             complement(20476..20928)
                     /locus_tag="PF788_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303524.1"
                     /translation="MTVKNLFLGFVAVILTVCLIGLLILATNEDALAKVHKTINTLNA
                     INVSTEDTYKKKMDILNIHTAKASEVNENVKKQNHFKHRVNANKSNSFNEQECQVIAD
                     RYADKHINDNYGLERISKTNHGYNYVYSNDNSTSKQHVSISNQGIITK"
BASE COUNT         6893 a         3813 c         2984 g         7363 t
ORIGIN      
        1 ctttatcttt tcattttact gtgaaacgaa ttagaaaatg atacatttcg cagataaaac
       61 acagtattat ttcattatac attaggagga aattatttgc atcggactcg agtatgagct
      121 acgtaccaaa tattatttca tcatttctaa ttgcattcta tattctattc catggaataa
      181 ttggtttaac cagttactat acttaacaag gttcttttca gccgttaaaa tatctataaa
      241 ttgaaatttc aaacgtgatc cttgcggttt ttgtgctaat ttcgttaaat gataacttgc
      301 gattgtaccg atttgcgggt agctacctag cgtataatga tcatttaata ggataatagg
      361 tgtgccatca cgcttaattt gtatcgttcc ttttttgaca gtctgatacg gtggcatatc
      421 ttcataaaaa gctttgattt tttcaccttc aagcatcatc cccatgcgat ttgctttgct
      481 cgttacttta taatcatgtt tcacaaatct ttgaatggca tcttctttaa aatcttccgt
      541 acctttattt ttaacgacat gaaatacatc agacatataa ttaaatgaca aggcgtatcc
      601 atcaataccc caatctgttt gtttcgtgtg agcaaggttt tcaaataact tatgatgacg
      661 agctgtataa tctctcttaa gctttatttc atcgccatct tgtaatgttc tacctttaaa
      721 accaccaatt tttacattaa agtcggttga gttagatcct aaccatgcat ctaattcaaa
      781 tccgcctccc acagctaaat acactcgcga tgtataactt gtttctctaa actttaaaac
      841 atcgccttta tctaacaaat acaatttata tggagatata gtcatatgct cagtgtaagc
      901 tttgacatta ccccctgcta atgcaatcag cgtaggttct gtaaaacgaa tcgttgccat
      961 tttattagtc atttccaaag ttgcttcatt cttgtcattt gcaactaatc gattagcaat
     1021 ttcatgtgct aaagtatcaa gtgcaccaca tggaattaca ccatcatgtt catatcccct
     1081 tctgccaaag tcctgaaagc tactgaataa gccacttttt tcaattatga ttgacatctt
     1141 taaacgctcc tacttctaat tcattttcat tgataggtct aaatttaata ttatcgccta
     1201 actttaagcg tgcgaaatct gattctttcg gattaaaaag tgataatggt gtataaccaa
     1261 taactaacca atcattaatt gtatccgtag ttacaatacc gcattttttc ccttcaagta
     1321 ctacagaacc agctggaatg aattttttct gtttactcgt gtgattaata tacaatttct
     1381 tatttaatcc agttaaataa ggaaacccag gtgaatatcc catcatcgaa acaaaatatt
     1441 gcgccttaga atgtaattca ataaaagttt ctagcttgat tttgtaatgt tttaaaagtg
     1501 attctaaatc cggaccatat ttcgaaccat acacaattgg tatttcaatc aaatcttgct
     1561 ggttaaaatc atgttttatg tttaaatgaa tcgattctat tagtgctttc atgtataaaa
     1621 aaggtgattg tatattatgg tgtttaatca tatcccttgc gtcatagaca atcatcatgt
     1681 ctgattctga tggcacaatt tctataataa atggataatt ttgttcaatt aaatatgagc
     1741 gaagtgttaa taaatcttcg gttaaacttt tagatacttc tttttcaatt gcgactacaa
     1801 tggcttggtc accttgacta tatattttca tttgtacacc tcttcaatat ttggttactt
     1861 tactttcatt tttaattata gaatcgattg aatagttcat tttacctact cactaaattt
     1921 actggtggta cattaaatcc attgcccgca caacaaaagg cataagttcg tgaattaatg
     1981 cgtatacaag gataaagctt ataacagtag taattgttgc tatcaaacga acaacatata
     2041 ttctattttc agatagcaat cgattcacta atcgataatt tacgtataca agaattaaca
     2101 acagcacaat ataaacaata atcatatttg gccccattta atttttaaat ttgttttcac
     2161 atcattttct actttattat catactaatt ttaaaggcaa aggtggacat cggcaacctc
     2221 tcgtaaacta tttatcaaaa ataaacgtat ctcattgtta tgatatttat aaatcaattc
     2281 gtttttatta aagtcttttt caacaagttt gtcactatct attaaataat cacgcatgca
     2341 tccttttaag aaatcatctt tataacttgg tgtgtaccat tttccatcct cttcaatgac
     2401 aatgttgcca atatcaaatt caaggacctt gccgtcctct gaagttagca atattaaatc
     2461 tgtttcatga ttgtgtgcta aatgctttcg ttctgtcgtt ttatttttta taaaagttgg
     2521 attaactact ttgggcaaca cttgaaattt tgctgtaaaa ctacttttct caggtaaagg
     2581 tgacactatc gtttcaaatt tgctttcagc atttaatacg attttaagtc tatattgacc
     2641 actgtgatac tttgttgtta catcgtttaa ttcatttcgc catgcatgtt catcaaattt
     2701 aaagtttaat cgctcagaag aacattttat gcgattagta tgataagtaa gtctagggat
     2761 atgtccatta tcaattttca ttgtttcaaa taattgcatt ataacatctc caaaatcttg
     2821 gtttttgcgt aaaattcatt cacttcatct tttggcttag aatcaattgt aatacctgct
     2881 ccgactccat aaatcgcttg tccatattta tactcaatag tgcgaatcgg aatattaaaa
     2941 atcattttat catcttcagt tggaagtaat agtccaattg ctccgcagta tataccacga
     3001 ggtgaacttt ctaattgttt aatatatttc attgtattca gtttcggtgc acctgtaatc
     3061 gaaccacaag gaaataacga tgttaaaatt tgagttaagt ctgtattatt ttttaaagtt
     3121 ccacttacca tcgaagtcat ttgaaataca gttttatatg cctcaataaa aaatagttta
     3181 tacaccttaa ttgagccact ctgtgatatt ctccctatat cgtttcttag taaatcaaca
     3241 atcatgacat tttctgcacg atctttcgaa gaagtttgca atgttttata atactgttga
     3301 tcttcagctt ccgttttacc tctaggcatt gtccctttca tcggtttgct tatgataacg
     3361 ttatcgacat tgttaaattg tcctttttga aaaaataatt ctggtgagat agacgctact
     3421 tggatttcat cagtttgtaa taacgcagta taattaccat tactaaattg agttaatcgt
     3481 tcatataaag tactaatagg ataataaatg ttatccgtta agcgcgccgt atagttcact
     3541 tgatacgttt cgccttcaac aattgcttgt tggacacgtt taatattagt catcataacc
     3601 tcagaagatt caacaaatga aaaatgatac tttgatacat aagaagtttg atgttcatat
     3661 gttgaattta tgctttccgc tttttcaaaa ctataagctg ctgcataaat atcatcttta
     3721 gctaatgaat gtgtacacat agcatgatta aaatactttg ccgcttcgta acttaaatat
     3781 aacgagacat atctaccttg tcgttgctgc gcttgtgcaa agtgtatcac ttctcccaca
     3841 tcagccaact tagtagcaac atacttcttt ataaatccct ttaattgaat atggtattgc
     3901 ttatattcat tttcagttaa atagtagcga taattatatt ctattctcac agtaatcacc
     3961 taccttcgat aaaaataatt caacttgtcg ataaccgtat tcactcaaaa tagattcagg
     4021 atgatattgc acaccaaaaa ccggaaatct aatatgctca aatgccataa taatcgcttc
     4081 atcgtttttt gctgtaatct ttaagcaatt tggaaaagtc gctccgtcag caattaatga
     4141 atgataacgc attacattga aattttgagg cagtccttga aaaatacctt cattggtatg
     4201 gcgtaactgt gtagtatgtc cgtgtacagg atgatagccg tgaatgatat ttccaccaaa
     4261 ataagacacg atacattgaa atcctaaaca tacacctagt ataggtacac gctgataaaa
     4321 ttgttctaac acttcattca agataggata atcatccgga ttacccggcc caggcgaaat
     4381 aacaattgct tttggcttca tattaatgac gtcttctatc agcagattat caataccaac
     4441 aacttgaact gttagtttcg tttgagtctt aatatagtct attaaattat atgtaaatga
     4501 atcattatta tctatgacta gaatcattgt atactccgtt ctaaatgtgt tttattttta
     4561 taatatgtat tggatgtagc taaaacttta aaagcattgt cattatcctg accttgattt
     4621 taactaatat atggtatatt ctattcatcg tacataaatg aatatcagag gttcctagct
     4681 gaaaccctct ataaaaaact agacattgaa atttcaaaca ttcgttggta aacctttaat
     4741 atatattata ggagcaaccc atttctttcg tctatctttt atggagatag gcttttttta
     4801 ttttataaat taaaaacggg cttatcaatg ccattaacct ctttattaat attattaatg
     4861 ataggagcaa ttacaaaatg gaaagtgtat taaataatga aaaagccatc gttgtcttta
     4921 gtggtggtca agacagtaca acatgtctct tttatgcaaa aaaacatttc aaagaagttg
     4981 aactcgtaac gtttaattat ggccaaagac atgatactga aattgaagtc gcaaaacaaa
     5041 ttgcacaaga tcaaggaatg aaacatcacg ttttagatat gtcattatta tcacaactta
     5101 ctccaaacgc attaacacaa catgatatgg aaattactaa taatgaagat ggtataccta
     5161 atacatttgt tccagctaga aatttacttt tcttgtcgtt tgcaggcgct ctagcttatc
     5221 aaattggggc taagcatatt attacaggcg tatgtgaaac agacttttca ggctacccag
     5281 actgtcgcga tagttttata aaatcaatga acgtaacatt aagcctagct atggacaaag
     5341 attttgtcat tcatactcct ttaatgtggt taaacaaagc agaaacgtgg aaattaagtg
     5401 atgaactcga agttttagat tatattcgta caaaaacatt aacatgctat aacggtatca
     5461 ttggggatgg ctgtggtgaa tgtccagctt gtcatttacg tcaacgtgga ctaaatcaat
     5521 atcttgaaag taaaggagcg ctttaaaatg ttacaacaaa tctatcctag tacaacgcat
     5581 ccatatcaat tcgaattaaa taaagatttt aatttttcgg ctgcacatca cattccatgt
     5641 gaagaagcag gtatttgtca aaatgtccat ggtcatactt actttgttaa tttaacaatt
     5701 gtcggtgata aactagatga cactggcttc ttagtgaact ttagccattt gaaaaagatg
     5761 atacacggta aatttgacca tcaactgtta aataacttac ctgcttttaa aaacaaaatc
     5821 ccttcaactg aaatcgtagc ggaaacaatt tatcaaattg ttaaagaaaa tttggcatcg
     5881 ctcgaacacc aaccaaaatg tattcaagta tttgtaagag aaacaccaac aagttatgtc
     5941 gtatttagac caaaggaaca ggtgtaacta atggctaaaa ttcctgtact cgaaatattc
     6001 ggtccaacca ttcagggtga aggtcgagta atcggtagaa aaacgatgtt tgtgagaaca
     6061 gctggatgtg attatcgctg tagctggtgt gattctgcat ttacttggga tggtagtgct
     6121 aaaggcgata taaaactcat gaccgctgaa gaaatttatg atgaattaaa acgaattggt
     6181 ggcgatttat ttaaccacgt tacaatttct ggtggtaacc cagcattaat taaaggtatc
     6241 caagagttag ttgacttatt tcaagataaa ggtattttca gcgcactgga gacacaaggc
     6301 agtaaattcc aaccttggat gacacaaatt gatgatttaa cgattagtcc aaaaccacca
     6361 agttcaacta tgacacctga tttaaaaaag ttagatgaag tgattacaca atgcgtacct
     6421 tcatcattaa acttaaaagt agttgtattc gacgataaag attatgattt tgccaaaatg
     6481 atacaccacc gttatccaga tattcccttc tatttacaag ttggtaaccc atatttatca
     6541 gacagcgtag ataatcatac cgaaaagttg ttagaacgct acgagcagtt ggtggattta
     6601 gttatgcaaa gtaatgatat gaatcacgtt tatgtgttac cacaacttca tacattactt
     6661 tggagcaata aaaaaggtgt ataaaggata acttatttta ctttttgcaa gtcatatcta
     6721 atgaataaca atatattaat tgatataata gttgattgaa gtataacgaa caggagtcca
     6781 tcatgattgt atatatatta attaatattg ctatcgtcgt acttataact ggattcaatt
     6841 tatataggca tcaaatgcaa catttatcat taagtgcaat gttgttatct attacgataa
     6901 acgcctttat aaatacattc ataattgata aatataactt tattactctg tgtactataa
     6961 cgatgtttat catttggacg atactacagt tttacattga taaaaaatta aaacctgtat
     7021 acattacaga ccaaaaattt attgctatca tattaacgat tgttgtcagt ttaacgcaac
     7081 gtgttaccga cttttcaagt acacaatcaa tatatatgtc tattccattt ttagcccctg
     7141 ccattttcat cattggtggt attatgttgt ttatttcaac atttaatagc ttagatgaaa
     7201 ctgctgaaaa taataacaaa ataaagaaac taatgattaa aggacttatc attattaaca
     7261 tttcatttat cgttatgatg gttttaacac catattggta cttgtattta atcgtctatc
     7321 ttattttctt gttgttttta ttgtggcaaa aggtttataa attttaatac caaaactatt
     7381 aaacacttct gatattctta gttcaaaata tcagaagtgt tttatagtgt tatctagttc
     7441 agataaatat ttccttactt aaaaaaacgc cctcctctta ttttgacccc tatttattta
     7501 aatcagacaa ttattttcat tttcaaatta ttctttcttc aatattagtt aagcgatatt
     7561 taaacgaagt taagaattag ttaatggcat attatttgcc ttcattttaa acttaactta
     7621 tcaaattgaa gaaatgagga gttagcatga atacaaaata ttttttagca gctggtgctg
     7681 ttatcacaac attagcttta ggtgcttgtg gtaattctaa ttcacaagat caaggtaaca
     7741 aaactgaaca aaaaacaaag tcagaagata gcaatgttaa aactgataaa acaaaacacc
     7801 taacaggtac attcagttct aaaaacggtg aaactgttga aggtaaagct gagattaaaa
     7861 atggtaaatt aatgcttact aactacaaat catcaaaagg tccagattta tacgtctacc
     7921 taacaaaaaa tggcgacatt aaaaacggta aagaaatcgc aatggttgac tacgataaag
     7981 aaaaacaaac atttgatctt aaaaatgtag atttaagcaa atatgatgaa gtaacaatct
     8041 attgtaaaaa agctcacgtc atcttcggcg gcgctaaatt aaaataatca atttctgagt
     8101 taaactttta tttacaacat actattacta tacattacaa atttttaaaa tatacattac
     8161 actcattact caatggaaag cgtatgattt cacagccccc ctagcttgta gaaatcatac
     8221 tttccttttt tcaatatata tacaactatt aaatcccata agattgcaga gcacataagt
     8281 aaattttttt agagcttgag gtttgtttag cttaagcaac ccatgagctc aaacacttcc
     8341 tgttcacata acactacaaa tcgcattatg ttgcttaatc ttatgtttat ataaattaca
     8401 cacaataaat agaaagaatg tgaacatcat gaataaatta ttgctactcg ttacatttat
     8461 cattcgtgtg ggttcaggta ttgttatgtt aatgcaaggc tacgaaaaat taacgggcgg
     8521 atttacgctg aaaggtttag taccagtcat cgctaacaat actgattcac cagagtggta
     8581 taagtggttt ttcgcaaata tagttgcaca tacgacgtca ttatttgata ttgttgtccc
     8641 actcggagag attgcaattg gattaggttt aatttttgga gtttttgcat atgctgctag
     8701 tttctttgga gcctttgtta tgataaatta tatcttagca gatatgatat ttacgtatcc
     8761 tcttcaatta actttcttta tccttttact aatgagtcac tcattgttaa aacagatttc
     8821 acttaaagaa atcattaatt actttagagg tcgtaagaac agaggtgaaa aaatagatga
     8881 cccacttact gatcgtggat gatgaacaag acattgtaga catttgtcaa acctattttg
     8941 aatatgaagg ttacaaagta acaacgacaa ctagcggtaa agaagcaatt tctttactat
     9001 caaatgatat tgatatcatg gtacttgata tcatgatgcc agaagttaat ggttacgaca
     9061 ttgtcaaaga aatgaaaagg caaaaattag atatcccctt tatctattta actgccaaaa
     9121 cacaagaaca tgataccatt tacgccttaa ctttaggtgc agatgactat gtcaaaaaac
     9181 catttagtcc aagggaactc gttttacgta ttaataattt acttacaaga atgaagaaat
     9241 accatcatca accagttgaa caactgtcgt ttgatgaatt aacacttatt aacttaagta
     9301 aagttgtgac tgtaaatggt cacgaagtcc ctatgcgtat taaggaattt gagttattgt
     9361 ggtatttagc ttctagagaa aatgaagtta tttctaaatc agaattactt gaaaaagttt
     9421 ggggatatga ctattacgaa gatgctaata ccgtgaatgt ccatatacac cgtattagag
     9481 aaaaattaga aaaagagagc tttacaacat ataccatcac aactgtatgg ggattaggat
     9541 ataaatttga aaggagccga taatggtgtt atcaattaga agtcaaatca ttattggcgt
     9601 cgtatcgagt atactattaa cttcaactat tttagcaatt gcatatattt taatgtggtt
     9661 taacggccat atgacactaa ctttgacctt aacgacaata attacaagct gtttaacctt
     9721 attaatatgt agtattttta ttaatccact tatacaaaaa attaagcagt ttaatataaa
     9781 aactaagcaa tttgctaacg gaaattacgc aagcaatgat aaaacgttta attcaccaaa
     9841 agaaatttat gaattaaatc aatcttttaa taaaatggct tctgaaatta cgcaacaaat
     9901 gaatcaaatt aaatccgaac aacaagaaaa aacagaactg attcaaaact tagcccatga
     9961 tttaaaaaca cctttagcaa gcattatgtc atattctgaa ggactacgtg atggtataat
    10021 cactaaggat catgagatta aagagtcata cgacatatta attaaacaag caaacagatt
    10081 atcaacatta tttgatgata tgactcatat tatcacttta aatacaggta aaacatatcc
    10141 cccagaatta atacaactag accaattact tgtatcaata ttgcaaccat atgagcaacg
    10201 tatcaaacat gaaaaccgca cattagaagt gaatttctgt aacgaaattg atgcatttta
    10261 tcaatatcga acgccacttg agcgtatttt aacaaactta cttgataatg cgctaaaatt
    10321 ttcaaatgtt ggtagtcgca ttgatattaa tattagtgaa aacgaagatc aagatactat
    10381 cgacattgct attagcgatg aaggtattgg cattatacca gaactacaag aacgtatatt
    10441 cgaacgtaca ttcagagtag aaaactctcg taatacaaaa acgggtggtt ctggattagg
    10501 cttatatata gctaatgaac tcgcgcaaca aaataacgca aaaatcagtg taagcagtga
    10561 tatagatgta ggaactacga tgactgtaac attacacaaa ttagacatta cgtcataatc
    10621 cgatttattt ataaaataaa atgcaaagac taaaaagaag ctcccattaa tgagggcttc
    10681 tttttttgtt tatttagaat aaactttatg ggtatccttc tcatcatttt caagacttga
    10741 aagatttgta gcttgaataa tatatttagg acgtgcctta acttcataat atatcctgcc
    10801 aatatattca cctacaacac caattgaaat taactgtatg ccgcctaata ataaaatagc
    10861 tgcaatcgtt gaaaaatatc ccggaatatt aacaccagat atcataatat tgatgaataa
    10921 atagataata tataacacgc ttattgaaaa gataaacaag ccaagataaa tcatcattct
    10981 caaaggttta ctattaaagg aaatcaatcc atcaatacca taattaaata actttttaaa
    11041 ggaccactta gattcccctt tttgtctctc aacattttga tacgtaaaca ctttagtatt
    11101 atagcctatc cattcaaata acccttttga aaatcgatta tattcttcaa gtgatgcaat
    11161 ggatttaaca gctctttggc ttaaaagtct aaaatcacca acaccatcat caaattgtac
    11221 ttcttctaca aagcaattaa ctaacttata atacaaatgg cttaatgttt tgcgactaaa
    11281 attttcacca cttctatcac gctttgcaat cacttgatca tagccttcca taaaaccttc
    11341 aaccattttc ggaatatatt caggtggatg ttgcaaatca caatctatca tgatgactgc
    11401 atcaaattca gtactatgct ggtaacctgc aatcatagct gcttcttttc caaaatttct
    11461 actaaaagaa ataaagctga catgcctatc tattgtggca agatgttgca tttcatctat
    11521 agtggtatcc gtactaccat catctatgaa aagcatatta taatcatagc ctttcacact
    11581 actatcttgt gaaagtattt cagttaattg ttgatgtgtt tgtgtaatga cttccccttc
    11641 attaaaacaa ggaatgacga ctctaatttt catctatgtc catccttttt atttaaaaga
    11701 ttttgaatgt acctgagtat tgttttatca aatagtaaaa accaactcat ttattttaat
    11761 gtacacatta aaaggcattc ataaacgtaa aatttaacat ccagttattt taaatcccca
    11821 attttcacat catctggatt tttaccttgt cttgcatttc tatttaaagc atcaatttca
    11881 gctacttctg ttaattctaa attaaaatct aaaatatcta tattttcttg aatgcgttta
    11941 ggtgtctgag attttggaat aataattcta ttgtgtgcta aatgccaacg taatacaact
    12001 tgtgctggtg ttttatgata tttttcagca attttaacaa tgacagggtc gtctagtagt
    12061 cctctatttc tcatcaaagg catccatgca gtcactttaa tatcgtgacg atcacaaaat
    12121 tcttgtaatt cttgttggtt aaaatatgga tgtacctcaa tttgattcac cattggtttg
    12181 atacttgatt gagccattaa tttttctaga tgatgaacat taaaattaca tacacctatt
    12241 gcttttacct taccttgctc gtaaagttct tccatagctt tatatgtttc taaaaataga
    12301 ccatctgctt cacaaggcca atgtattaga aataaatcaa gataatcagt ttgtaaattt
    12361 tcaatcgatt tgttgaaata ttcgaatgtt ttctcataac cttgatagtc attccataac
    12421 ttcgttgtta taaacaaatc ttctctatcg acgccattat cctttaatgc tcgtcctagt
    12481 gaagcctcat tatcataaaa gtatgctgta tcaaacgctc tatagcctgc gtcaattgca
    12541 gcatttacaa ctttagtcat atcttcgtca gagattttat aaacacctaa cccaactgaa
    12601 ggcatcgggt atccattatt taatatttgt atctcattca acatctttat atctctccaa
    12661 tctatgtatc ttttatatct ttacattacc ctaaattttt caacaaactc aattaatacg
    12721 aattatcgct ttcaataaaa attattcatt aaatcattaa agatattgag ttccaatact
    12781 attttcactt ttcattaatt ttagtcaaaa aaataaccaa ccaaaaatga attaaatcat
    12841 tcttagttgg tttatatatt aatatctatt ctgatttttc atcttcatca gactgtccga
    12901 tagtaggtct cgcttcatta aattcatagt ttaatatcac ccaaataatt tggtggttat
    12961 cgatttctga aacaacccag cgatcataag ttgtatccac gtaatcatct ttttgtaaat
    13021 tggtattacg agattgtaac catccaccta tcgtatcaat atcctcagag tcatcaaatt
    13081 ctataccgaa ctcttcagtt aaatcatcca atagtactct gccatttact tggaatgtct
    13141 tattatcaat tttaacgata tcattcactt catcatcatc aaattcatca cgaatttctc
    13201 caacgatttc ttctaaaata tcttccatcg ttaaaatacc tgccgttcca ccatattcat
    13261 ctataataag actcatatgt acatgttcac gttgcattct aattaatgca tcactgatac
    13321 gtgttgtctc tgaaatcatt ggcaactcat gtatatagtt tgctatttta atcgtttttc
    13381 cagaagcgta ttcagttaaa aattctttga cgttaataaa tcctttaatg tggtctttat
    13441 caccatcatc agtaattgga taacgcgtaa attgatgttc ttttattgtt tctagtaatt
    13501 cgtctacatt aaaaggttca tttagtgtaa tcatttgagt tctaggtacc attatatctt
    13561 ttgcatgtct ttcatcgaat gaaaagatat tttgcatata tgccaattca gtttggttga
    13621 tttctccacc attataacta ttgttaataa taattttgat ttcttcttct gacattgcat
    13681 cagtttgggc atcaggattt acaccaaaca ttctaataat aacacgtgca gaaccattca
    13741 tcagccaaat caatggtttc ataatgttac cgaaatagaa caatggtctt gcatatacta
    13801 aagcaagctt ttcagtatgt tgaatagcta tagatttagg cgctaattca ccaagtacta
    13861 catgcaaata cgtaacgatt ataaatgaca ctgcaaacga aatcgtcgtc gttaatgcag
    13921 ttggtaaatt gattgcttca aatattgggt gtaatagctt ttcaaacgtt ggttcaccaa
    13981 gccaacctaa ccctaaagat gttactgtta tacctaactg acaagcagaa agataataat
    14041 ctagattagc aatcatcttt tttactattt tagcaggttt atttccttca tctgctagct
    14101 gttcaattct tgttgctcta atttttacta atgcaaattc tgaaccaaca aatacagtgg
    14161 ttaatgcaat taatagaata aatataatca aactaattat ggtcgaagtt tccaattaat
    14221 tccctatttc tagggattca cctccatgtt atatgtgtca ctcatgggta acacgcattc
    14281 aaatttatca ctatgactta aattacaact acatgttatc gccttcccat ttagacaccc
    14341 ccagaaaaaa atgttattgc ttctatttta tcataatata aagtgcttat gttaacagat
    14401 taaatctatt gcatacattt aattatgatt atttattagc taaatgtgtg aaccttgcct
    14461 tgttttattg tagattttac attcatatca tcatctagaa taacaagatc tgcatcctta
    14521 tttactttaa tactaccttt tctatcatcg atacctaatg caatggcttg atttaaactt
    14581 gttactcgcc ataaatgatc taatgtatca cctgtaaatg atattaagtt acgtaaccca
    14641 tgattcattt ttaaaatact accagcaagc gcaccatttg caagacgtgc ttgttgcgat
    14701 tgaacagtta ctttttgtcc acccaaatca tattctcctt caggcatacc ttttgcacgc
    14761 attgcatcgg taattaaata aaaacgttca ttacctttca tacggtaagc aattgcaacc
    14821 gatgccggat gagaatgagt gccatcaaca atcatttcgg tatgtagagc atcattcaac
    14881 catgctgctc caaaaacacc tggttctcta tgttggaatg gcgtcgctgc attatataaa
    14941 tgcgtgacat gtttagctcc tcgctcaaca gcttcaactg cttcttcgta tgttgctact
    15001 gtatgaccaa ttgaaaaaat aatgtcatct ttatacgttt caagcgcttc ttttgcacct
    15061 tcaacttcag gtgcaaacgt cataatcttt attaatccgt tagcagtctc ttgaaaatgt
    15121 ttaattttat cgataaatgg gcgtacaacg tattgcggat gttgagcacc aactttattt
    15181 tcagatataa atggtccttc taaatgtata cctacaattt ccgctgcatt gtgaacatct
    15241 tgctccgctt catatttagc aatatttgta agtgcattat ctattttatc agtcgattgc
    15301 gtcattgtag tggccaagta tgatgtcgtc ccttcagaca acaaattttc ggatagatat
    15361 tttaagccat cgtatgaccc atccattgca tcttgaccat aaccaccatg aatatgtata
    15421 tcaataaaac ctggtaatac atgatgacct ttagcatcaa tcacttgaat tttatttgtc
    15481 gtatcattat caattgctgc tttatcatcc acttctccaa ttgcaacaat ctgtccatct
    15541 ttcacatgaa tgtaaccatt atcgattttg ccatcttcag tataaacttt gccgttatat
    15601 ataattaatt ctgacacgta taaacccttc tttatttata aattttcact ttaagacact
    15661 catattttac tatatctgct tcgtttggca taactttttg caaaatatta aaaaagtcta
    15721 tacatttgtg gtgtctattt cttcattcat ttatctaaaa ataaaaacac tttcatatca
    15781 attcataaaa actgaattaa tagaaagtgt ttttacagct ttgtataagc taccgttaac
    15841 acgatatata aaactaacat atattcattg aacatacaac ttaatatgaa gctctttgct
    15901 aacaatcatt ttacatcatt aaaactactc gtccattgat tttgaagctt cgatttctgt
    15961 ttcagttaac tttggtttga ttaaaccgta aattaatgct gaaactaatg tgccaactag
    16021 aagtgcaata agagtttgaa gtaagtgtgc accatcagta ccaacaatta caataatacc
    16081 accatgtggc gcagtaattc gtgaacctaa gcctaaagca attgcgccac ctatacctga
    16141 accaatcatc attgaaggaa taacacgtaa tggatcggca gctgcaaatg gaatcgcacc
    16201 ttctgtaata aatgacatac ccatcacata gttagggata attgaaccac gttgttcttt
    16261 tgtaaattta cgtctaaaaa ttaacatcgc tgtcgcaatt gctaacggtg gaatcatacc
    16321 accaatcatt gcagctgtaa ttggtgctgc attaccttca atcaacgcac ctgttgcaaa
    16381 aacatatgcc gctttgttga atggaccgcc catatcaatc gccatcatag cgccaataac
    16441 taaacctaat aatacaatat tagaacctga taaattgttt aatccatcta ataacaaatg
    16501 atttaaccaa gatgctggtg gattaaaggc ataaatcatc aataagcctg tagccgtcac
    16561 tgttaatagt ggataaatta atgttggctt taatccctct aatgcttgtg gtaacttacg
    16621 tgtcatggct ttaacacctt gtgttaagta acctgctaag aaacctgcaa taataccacc
    16681 aataaatcct gaaccacctg aaattgctaa cataccacct acaagacctg aagcgaaacc
    16741 aggtttatcc gcaatactac gtgcaatgaa tccagataaa attggaatga ttaacgcgaa
    16801 tgcactttta ctaccaatgt tccaaagctg ctctgcaaac gcattgtact ctgagctttt
    16861 tggattaaat gaatttgctc caaataaaaa tacaattgcc attaaaatac caccagatat
    16921 tacaagtggc aacatgttag aaacaccgtt cattaagtgt ttatagaatg ctttacctgg
    16981 gcttaatttt tcttgactgt catttgagtt accttttctt tgaccatcac gggcaacaaa
    17041 aggtttacga cttgtatcta atgctttatt aattaattct tctgggcgtt taataccatc
    17101 tgctactggt acttctacga catttttacc atcgaagcga tccgtctcaa catgaacatc
    17161 agcagcaaca atgatacctg ttgcattttc aatatcttgt tcagttaaat ggtttttaat
    17221 gccgcttgaa ccattcgttt ctactttaat tttaataccc attttatccg cttgcttttt
    17281 caatgcatca cgtgccatat atgtgtgtgc aatacctgtt ggacaagcag ttactgctaa
    17341 cacatatggc tcattagatt gtttagatga ttgttctgca gttgcaactt gttgtgcttc
    17401 agcttctgcc tcttcttctt ttgtcacttc atcatcagcc tcatctatga tcgctagtac
    17461 ttcttcaggt gatgaagcat gtaataattt ctcacgtaca ttttcatcca ttaaaatacc
    17521 agacaactta gctaaagcat ctagatgtgt ttgggcgcca ccttctggcg ctgcaatcat
    17581 aaagaataag tgtgctggtt gcatatccaa actttgataa tctacgcctg ctttagattt
    17641 accaaacgca atagctggtg acttaactgc ggccactttg gcatgtggaa tggcaatacc
    17701 ttcgccgata ccagttgtac tttgtgattc tcgattgtga atcgcttcct taaatgacgc
    17761 gacatcactt aatttacctg ctttgtctaa ttgatttact aactcatcaa taacaccatt
    17821 tttgtcattt gccattaaat ccattgctat tgtatctttt gttaataact ctgttactct
    17881 cattattttc actccccatc aagtacgcta atcgtaactt gtgattttat tttttctata
    17941 gcgtcccgtg ttgctaagtc ctcatcaaat gccgtggcag taccgcatgc gactgcttgt
    18001 tggaatgctt tttcaatcgt taaacctgaa gcaattccag ccaccatgcc tgcaactgta
    18061 ctatcaccag agccaactgt attaaccact ttcccttgtg gattaactgc tttaatactg
    18121 atttctttat caatataaat agcaccatca ccgccaagcg agacaataac agattgcgca
    18181 cctttatcaa ctaacaaacg accatattta ataacatctg tgtctgagtt cactgttgta
    18241 ttaaacatca cttctaattc atctttatta ggtttaataa atagtggatg atatggtaaa
    18301 acgctttcag ccaattcttt ttcagcgtcg actactaatt tagcacctgt ctgtgctgta
    18361 atttgtgcaa tttgcgcata cgcatcgctt ggaatactac ttggtacact tccagcaaca
    18421 ataactatat cttcgcttgt tgtattttta atttgttgta acagttgttc aaattgtgtt
    18481 gacgttatat gaggacccgg tgcattgatt tctgtttctt gtcctgtttt taatttcaca
    18541 ttaatacgtg tatcttcatc aacttcaata aaattcgatt gaattgcact gttatttaat
    18601 gtatctataa tgaatttccc aggaaatcca cctgcaaatc ccaaggcagt tgactcaaca
    18661 tccaatgtct ttaagacgcg cgagacatta atacctttcc ccccagcgaa tttatatgtt
    18721 gctgttgctc tgttcaaacc atcaatttta aaatcattcg taaaaatgac atagtcaatt
    18781 gaaggattga aagtcactgt ataaatcata aagtccctcc tataaagtga tacttttgtt
    18841 ggtattcttt taacgattct tgatttaatg ctttttcaga tgtgatgatt gtcgtacttt
    18901 ctagcaaagg tacacgagca aaatatactt tattaaactt agaatgatct ataagtacaa
    18961 atgattgatt ggctaatgac attgctgttt gtttaactaa tgcctcttgc tcatcgggag
    19021 tagttaatcc aagttcaata tctaatccat tcatcccgat aaaagcttta tcgaaacaat
    19081 atcgtcttaa tatctccata gcactagaac caatcgtagc aagtgtattt tctttaactt
    19141 gaccacctag cataattgtt ttaatacctt ttttaagtaa agcttctaca tgtgttaaac
    19201 cattagttac cacaatgata tctttcgctt gaatatattt aattagctcc aatgtagatg
    19261 aaccagcatc gataaataag cattcattat cgttgatttg attagctgct attttagcaa
    19321 tcattttctt ttcatcaaga ttcgttgcta atttttcagt taaattcgcc tcaaccatac
    19381 gattttcttt taacattgca ccaccatgca cacgttgcag tttccctaat tgttgtagtt
    19441 tagataaatc tcttcgtatt gttgaagcac tgcaaccagt tcgatctatt aattcttgta
    19501 aagtcaaaaa atctttgtgc gaaagttctt ctaatattaa ctcgtgtctt ttttcagtaa
    19561 ttatcatcat caccccatct cactttgtat tataatgagt acgctttcac ttttcaatca
    19621 taaattacca aaaacaatca caaacactca aattgtgacg ataaaattac atttttatgt
    19681 tcaaatactc aattataatg actgtttatg atcgtaaaat gctaattcaa tcaaaaagga
    19741 gtgtggcaga aatgaatttt ataaaaattt catctctgtc acactcctaa tcttgcccca
    19801 tactttttgt tgttattaat cattcatgga taactgctcc aattttgcct ttagttattg
    19861 taatcaaatc ctcaacagct attgtgattt gcattgttcg aagcccacca ctcacactga
    19921 tatgactata attttcacac gatttgtcaa cgactgttgg aaacaatgtt ttcataccaa
    19981 caggcgaaca cccaccacga atgtatcccg ttacattttt caaattatct aaaggcataa
    20041 gctgcaattt cttctctcca accaaagcag ctgccttttt catatctaaa gtttcactta
    20101 ctgggataac aaatacaaaa tgttcatgtt ttgtattttc tagaacaagc gttttaaata
    20161 ctgttttaac atttgcttgt atgagttctg cgacttcttg accagataaa tgttcttctg
    20221 gtacctcaaa gctatgaact tcgtatttaa tttttgcacg atcaagcata cgcatcgcgt
    20281 tcgttttctt atttttagcc atttcaacac ctcatttata cttcttcaga actatattaa
    20341 cattttaaaa tacattacgg attggttgat tttgacataa catttacatc attttataag
    20401 ttgaattcac ctttttaaat taaattattg caaaataaaa acagtatatc caattagaat
    20461 acactgttcc atctattatt tcgttattat gccttgattt gaaatactta catgttgctt
    20521 actagttgaa ttatcattgg aatacacata attatatcca tgatttgtct tagaaattct
    20581 ttctaaacca taattatcat tgatatgctt atctgcataa cgatcagcaa taacttggca
    20641 ctcttgttcg ttaaaagaat ttgatttatt tgcattcaca cgatgtttaa aatgattttg
    20701 ctttttcaca ttttcattca cttcagatgc tttagcagta tgaatattga gaatatccat
    20761 tttcttttta taagtatctt cagttgatac atttatcgcg ttaagcgtat taattgtttt
    20821 atgtacctta gcaagcgcat cttcatttgt tgctaatatt aataaaccaa ttaaacaaac
    20881 ggttaatatt acagcaacaa agcctaaaaa taaatttttt actgtcatcc ccttacccac
    20941 atttccttac tcatttttta tcatcttaac acattaacgt taatgaatta ggtatgtgga
    21001 ttgcaattta aaaagaatgt aatatttgta acatgtttat tactcaaaat cat
//
LOCUS       DAMQWL010000038        20902 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.038, whole genome shotgun sequence.
ACCESSION   DAMQWL010000038 DAMQWL010000000
VERSION     DAMQWL010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 20902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20902
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.038"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            31..549
                     /locus_tag="PF788_001260"
     CDS             31..549
                     /locus_tag="PF788_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrpB family protein"
                     /protein_id="HDG6303525.1"
                     /translation="MYSNVQPFINSDLTNCFQSQYTEIESLLFNLLDSPVKYTKHIGG
                     THHFKYSTEPILDILVGVENLHDITSLDEKRLNYVGFYRLHHKYTKKVMMAKFNNFHE
                     LKQQVRLHIIQMNTQTFESYLALDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQK
                     QQYFEKLCKKYL"
     gene            676..1599
                     /locus_tag="PF788_001261"
     CDS             676..1599
                     /locus_tag="PF788_001261"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDG6303526.1"
                     /translation="MINKDIYQALQQLIPNEKIKVDEPLKRYTYTKTGGNADFYITPT
                     KNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRGIVISLLSLDHIEVSDDAIIAG
                     SGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQ
                     GSLIKLTTKELELDYRNSIIQKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQP
                     LEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYEN
                     LIHYVQKTVKEKFGIELNREVRIIGEHPKES"
     gene            1617..1931
                     /locus_tag="PF788_001262"
     CDS             1617..1931
                     /locus_tag="PF788_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303527.1"
                     /translation="MPKVYGSLIDTETRCRHYFTEEDIIAIKFKCCNKYYPCYKCHNE
                     FEKHAIKRWSEPSFNEKAILCGVCKHELTINEYMMVERCPNCQSRFNNRCKYHYHIYF
                     EI"
     gene            complement(2248..3276)
                     /locus_tag="PF788_001263"
     CDS             complement(2248..3276)
                     /locus_tag="PF788_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6303528.1"
                     /translation="MKKTVLYLVLAVMFLLAACGNNSDKEQSKSETKGSKDTVKIENN
                     YKMRGEKKDGSDAKKVKETVEVPKNPKNAVVLDYGALDVMKEMGLSDKVKALPKGEGG
                     KSLPNFLESFKDDKYTNVGNLKEVNFDKIAATKPEVIFISGRTANQKNLDEFKKAAPK
                     AKIVYVGADEKNLIGSMKQNTENIGKIYDKEDKAKELNKDLDNKIASMKDKTKNFNKT
                     VMYLLVNEGELSTFGPKGRFGGLVYDTLGFNAVDKKVSNSNHGQNVSNEYVNKENPDV
                     ILAMDRGQAISGKSTAKQALNNPVLKNVKAIKEDKVYNLDPKLWYFAAGSTTTTIKQI
                     EELDKVVK"
     gene            complement(3395..4156)
                     /locus_tag="PF788_001264"
     CDS             complement(3395..4156)
                     /locus_tag="PF788_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303529.1"
                     /translation="MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLL
                     SAICRLIRFENGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFP
                     YSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLD
                     EPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSD
                     LKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD"
     gene            complement(4153..5109)
                     /locus_tag="PF788_001265"
     CDS             complement(4153..5109)
                     /locus_tag="PF788_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDG6303530.1"
                     /translation="MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFI
                     LIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVY
                     LNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPES
                     FLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISY
                     EKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWI
                     SLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ"
     gene            complement(5096..6067)
                     /locus_tag="PF788_001266"
     CDS             complement(5096..6067)
                     /locus_tag="PF788_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303531.1"
                     /translation="MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNI
                     LFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFP
                     TGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
                     TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGL
                     SYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGA
                     IFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ"
     gene            complement(6106..6261)
                     /locus_tag="PF788_001267"
     CDS             complement(6106..6261)
                     /locus_tag="PF788_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303532.1"
                     /translation="MFYFTLSKQNTHSEKLNFSLIANINKIDTKLFERLLKLWSKNAT
                     INEKYYQ"
     gene            complement(6775..7746)
                     /gene="nrdF"
                     /locus_tag="PF788_001268"
     CDS             complement(6775..7746)
                     /gene="nrdF"
                     /locus_tag="PF788_001268"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HDG6303533.1"
                     /translation="MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSE
                     AEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHI
                     FTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFL
                     ETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEK
                     QKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEE
                     REFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK"
     gene            complement(7864..9969)
                     /gene="nrdE"
                     /locus_tag="PF788_001269"
     CDS             complement(7864..9969)
                     /gene="nrdE"
                     /locus_tag="PF788_001269"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000855513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HDG6303534.1"
                     /translation="MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVK
                     DKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFF
                     KDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNA
                     GRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIK
                     GVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRL
                     STISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVE
                     KKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQET
                     SIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAP
                     GVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIA
                     KERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDV
                     EQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTM
                     WYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKS
                     LYYTRNKLLSVEECTSCSI"
     gene            complement(9932..10330)
                     /gene="nrdI"
                     /locus_tag="PF788_001270"
     CDS             complement(9932..10330)
                     /gene="nrdI"
                     /locus_tag="PF788_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HDG6303535.1"
                     /translation="MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVT
                     GTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFE
                     LHGKNKDVIEFKNKVGNFNENHGREKVQSY"
     gene            11131..11997
                     /locus_tag="PF788_001271"
     CDS             11131..11997
                     /locus_tag="PF788_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001594836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDG6303536.1"
                     /translation="MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVA
                     MFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLN
                     PFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAAS
                     AYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVG
                     QIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMF
                     EKARRDAKIIKK"
     gene            12017..12517
                     /gene="queF"
                     /locus_tag="PF788_001272"
     CDS             12017..12517
                     /gene="queF"
                     /locus_tag="PF788_001272"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDG6303537.1"
                     /translation="MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDY
                     FVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCM
                     NIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYP
                     EKIDNR"
     gene            12858..14363
                     /locus_tag="PF788_001273"
     CDS             12858..14363
                     /locus_tag="PF788_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HDG6303538.1"
                     /translation="MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMR
                     ALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLG
                     AVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFV
                     IFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMK
                     PTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYF
                     TLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGW
                     KTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGI
                     VGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNA
                     SAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAISPLIIKAMKGIR"
     gene            complement(14441..14542)
                     /locus_tag="PF788_001274"
     CDS             complement(14441..14542)
                     /locus_tag="PF788_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303539.1"
                     /translation="MVINEIDFYRVGRENIVIAVYNEHIKFLFILIS"
     gene            14633..15550
                     /locus_tag="PF788_001275"
     CDS             14633..15550
                     /locus_tag="PF788_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HDG6303540.1"
                     /translation="MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLS
                     ENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTF
                     NDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGS
                     KDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTD
                     LSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKV
                     DIDGEISLETPIDIEVIPNAIQLLTVNDL"
     gene            complement(16174..16716)
                     /locus_tag="PF788_001276"
     CDS             complement(16174..16716)
                     /locus_tag="PF788_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'(3')-deoxyribonucleotidase"
                     /protein_id="HDG6303541.1"
                     /translation="MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLK
                     HVIPEHDGLITEVLRESGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDK
                     YEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDR
                     FERVNSWKDVEQYFLDNIEK"
     gene            complement(17067..18125)
                     /gene="hisC"
                     /locus_tag="PF788_001277"
     CDS             complement(17067..18125)
                     /gene="hisC"
                     /locus_tag="PF788_001277"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDG6303542.1"
                     /translation="MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSP
                     KVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLT
                     PGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPN
                     NPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRT
                     FSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHK
                     NSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIG
                     FKEQNDKMLEVLSNFKYE"
     gene            complement(18365..19879)
                     /locus_tag="PF788_001278"
     CDS             complement(18365..19879)
                     /locus_tag="PF788_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HDG6303543.1"
                     /translation="MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILL
                     TKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYT
                     GIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIG
                     AGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVM
                     IIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAF
                     LFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMK
                     YNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNL
                     DNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKE
                     SFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK"
     gene            complement(19872..20849)
                     /locus_tag="PF788_001279"
     CDS             complement(19872..20849)
                     /locus_tag="PF788_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303544.1"
                     /translation="MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTL
                     KMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQM
                     KKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMD
                     EPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQID
                     TPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYD
                     NQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD"
BASE COUNT         6815 a         3636 c         3041 g         7410 t
ORIGIN      
        1 aattaatttt caatatcaaa ggagtttatc atgtattcaa atgttcaacc attcattaat
       61 agtgatttaa ctaattgttt tcaatcacaa tacactgaaa ttgaatcatt attattcaac
      121 ctcttagaca gcccagtaaa atatacaaaa catattggcg gtacgcatca ttttaaatat
      181 tcaacagagc caattttaga tattttagta ggtgtagaaa atttgcatga tattacatcc
      241 ttagatgaaa aacgcttaaa ttatgtaggg ttttatcgtt tgcatcataa atatactaag
      301 aaagttatga tggcgaagtt taacaatttt catgaactaa aacaacaggt gcgtctacat
      361 atcattcaaa tgaataccca aacatttgaa tcttatcttg cacttgatta cctcttatca
      421 actaatgatg atattgcttt gcaattcaat acaaaaaaac accaaatatt gcaacatagc
      481 ttaacaatta gacaatatga gatgcaaaag caacaatact ttgaaaaact atgtaaaaaa
      541 tacttataac gacaataatg ccgtatttta taattatact aattctaata ctttcttttc
      601 aattttcgca aatgaatttt aaaattggta taatactata tgatattaaa gacatgagaa
      661 aggatgtact gagaagtgat aaataaagac atctatcaag ctttacaaca acttatccca
      721 aatgaaaaaa ttaaagttga tgaaccttta aaacgataca cttatactaa aacaggtggt
      781 aatgccgact tttacattac ccctactaaa aatgaagaag tacaagcagt tgttaaatat
      841 gcctatcaaa atgagattcc tgttacatat ttaggaaatg gctcaaatat tattatccgt
      901 gaaggtggta ttcgcggtat tgtaattagt ttattatcac tagatcatat cgaagtatct
      961 gatgatgcga taatagccgg tagcggcgct gcaattattg atgtctcacg tgttgctcgt
     1021 gattacgcac ttactggcct tgaatttgca tgtggtattc caggttcaat tggtggtgca
     1081 gtgtatatga atgctggcgc ttatggtggc gaagttaaag attgtataga ctatgcgctt
     1141 tgcgtaaacg aacaaggctc gttaattaaa cttacaacaa aagaattaga gttagattat
     1201 cgtaatagca ttattcaaaa agaacactta gttgtattag aagctgcatt tactttagct
     1261 cctggtaaaa tgactgaaat acaagctaaa atggatgatt taacagaacg tagagaatct
     1321 aaacaacctt tagagtatcc ttcatgtggt agtgtattcc aaagaccgcc tggtcatttt
     1381 gcaggtaaat tgatacaaga ttctaatttg caaggtcacc gtattggcgg cgttgaagtt
     1441 tcaaccaaac acgctggttt tatggtaaat gtagacaatg gaactgctac agattatgaa
     1501 aaccttattc attatgtaca aaagaccgtc aaagaaaaat ttggcattga attaaatcgt
     1561 gaagttcgca ttattggtga acatccaaag gaatcgtaag ttaaggagct ttgtctatgc
     1621 ctaaagttta tggttcatta atcgatactg aaacacgctg tcgccattat tttaccgaag
     1681 aagatattat tgctattaaa tttaaatgtt gtaataaata ctatccatgc tataagtgcc
     1741 ataatgagtt tgaaaagcac gccattaagc gttggtctga gccttcattt aacgaaaaag
     1801 caatcttatg cggtgtatgc aaacacgaat taacaatcaa tgaatatatg atggtagagc
     1861 gttgtccaaa ttgccaatct cggtttaaca atcgctgtaa atatcactat catatttatt
     1921 ttgaaattta aacaacatag tcaaaacatt atagggagtg ggtcagacat gataaagcac
     1981 cacttctgta gaattccttt ttgaaattct ctatgtttgg gccccgccaa cttgcattgt
     2041 cagtagaaat tgaaaatcaa atttctctat gtttggagcc cactagtatt gaaatgaact
     2101 tgttacaagt acatgttcat tcaaccaacg actgacaaca gaacatttta gagtctagga
     2161 cattgattga cgtcccagat ttcctttttt aaagaaaaga ggggagcaat gattaagacc
     2221 tttaaccatt gttcccctct tttaaaatta ttttacaact ttatcaagtt cctcaatttg
     2281 tttaattgta gttgtagttg atccagctgc aaagtaccat aatttaggat ctaaattata
     2341 tactttgtct tctttaattg ctttaacatt ttttaataca ggattattta atgcttgttt
     2401 cgcagttgat ttaccactta tcgcttgacc tctatccatc gctaaaataa catctggatt
     2461 ttctttatta acatattcgt tagaaacatt ttgtccatga ttgctattac ttactttttt
     2521 atcaactgca ttgaatccta atgtatcgta aactaatcca ccaaaacgac ctttaggtcc
     2581 aaatgttgat aattcacctt cgttaactag taaatacata acagttttat tgaagttttt
     2641 cgttttatct ttcattgaag caattttgtt atctaaatct ttatttaatt ctttagcttt
     2701 atcttcttta tcgtaaattt ttccgatatt ttcagtgttt tgtttcattg aaccaattaa
     2761 gttcttttca tctgcaccaa cataaacaat tttcgcttta ggtgcagctt ttttgaattc
     2821 atctaaattc ttttgattag ctgtacgtcc agagataaag attacttcgg gtttcgtcgc
     2881 agcaatttta tcaaaattca cttcttttaa attaccaacg tttgtatatt tatcatcttt
     2941 aaatgattct aagaaattcg gtaatgactt accgccttcc cctttaggta atgcttttac
     3001 tttatctgat aagcccattt ctttcattac atctaatgcg ccatagtcta acacaactgc
     3061 atttttagga ttttttggta cttcaacagt ttctttaact tttttagcgt cactaccatc
     3121 ttttttctcg ccacgcattt tatagttatt ttcaattttt actgtatctt tagaaccttt
     3181 agtttctgat tttgattgtt ctttatcaga attgttaccg catgccgcta ataaaaacat
     3241 tactgctaat actaaatata agactgtttt cttcataata taatattctc ctcttttggc
     3301 ttaatctgtg tgcttgatgt gaaatataaa taaatgcttt acgtttaacc cttctttaat
     3361 tggcgcatca cccctttaaa gtgtctccaa attatcaatc cttaaaatat aaacaaatcc
     3421 tttgatttct tatatgttca atttgaatat tcatgtcata taaatcactt aaaacactac
     3481 tttgaatgac attatctttc aaatctgact taactagttg tccgtttttc aatgctacaa
     3541 tctgatctga ataacaggac gcaaagttaa tatcatgtaa cacaatgaca atcgctttat
     3601 tcattttatg cgctaacatt tttaacgttt gcataatttg aacagcatgc ttcatatcta
     3661 aattatttaa tggttcatct agcaaaatat attcagtatc ttgtgctatt gtcattgcaa
     3721 tgtatgcacg ctgacgttgt ccaccagata atgacttaat attacgattt ctgatatctt
     3781 gtagttgcaa caaatctagc gcatcattga caatatcatg atcctctttc gtcaaacgac
     3841 ctttagaata agggaatcgt ccaaagttta ccaactgctc taccgtaata ttcatttcag
     3901 tatggtttgt ttgttttaat atagatattt ttttcgacaa gtcattattt ttataatcag
     3961 acatgagctg tccatctatt ttcacttcac cgttctcaaa acgaattaac ctacatatcg
     4021 ctgaaagtaa agtactctta cccgcaccat taggtccaat taaagaagtc aatttacctt
     4081 tttcgatatc tatgctaata tcttccaata tcatttgatt atttatagtt ttagttaaat
     4141 tttcaacttg aatcattgcg catttctcct tctaactaat agataaatga aataacttcc
     4201 accaatcaaa tcaataagta tactcatttc tgtcgtagct tcaaacacat tttcaactac
     4261 ccattgcgca ctaaataaac taatccaact caagcaaatt gtcgcaatta aaatatactt
     4321 atgttcatac gtcttcatta gttcatgcgc tagatttaca gttaataaac ctaaaaatgt
     4381 aattggtcct actaatgcag ttgacacaga aactaaaact gagactatta caagtagaat
     4441 tcgcgttaat ttttcatacg atatcccaag attaattgct tcagcacgac ctaaaagcaa
     4501 tacatctaaa taaggcaata gtaaaattgt aatgactaat aagattacta atagcactgc
     4561 tgagaaagta actaaattcg aattagaagc attaaaatta gcaaacatac tactttgtat
     4621 tgctaaaaat gactcaggat ccataatcag ttgaataaaa cctgttatgc ttctaaaaaa
     4681 tgttcctaaa aggacaccaa taagtaagat aaaataaatt gaaaaatgtc cgattttaaa
     4741 gataccttgg aataggatta gtgcgaataa caccatcgtt ataagtgtta atataaagtt
     4801 caaatataca ttagtaaccc ataccgattg aattccaaat aaaaagactg gcaatacttt
     4861 gataaataaa taaactgcat ctaaccccat tattgatggt gtcaatagac ggttatttgt
     4921 aatcgcttga aaaatcacca ctgaagttgc aatggcagca cctactaaaa taattaatat
     4981 gaactttctt aaacgacttg aaaattgata ttcaaatatt tcaaaatcaa tacctacaaa
     5041 taagtacagc atactaatta ataacgttac tgcaattaaa agcattattt ttttattatt
     5101 gttgcgcata atttttccta cctttcataa gcaagataag gaaaatgatt gttccaaata
     5161 cacctattgt taaaccaata tttatttcat atggataaac aacaattctg ccaactatat
     5221 cagaaaataa tacaaagatg gcacctaaca tcatcgtatg agggatagca tttttcaaat
     5281 gatcacctcg ataaattgaa ataatatttg gtattactag tcctaagaac ggtaatgttc
     5341 caacagtcac cactaccaat gctgtaatag ttgcagtaat aaacaatgcg atgttaatta
     5401 atttttcgta actcaaacct aaattattag taaagtcttt acccattcct acaatcgtga
     5461 aatgattagc aaaaagatat gtcaatgcta aaagaggaat acttaaatat aaaatttcat
     5521 agcgtccact tgtgataatg gcaaagttcc cgttaagcca gttaccaatg ctttgaacag
     5581 cattcgtgcg caatgagatg aaggttgtga aacttgcaac aatcccaccc atcataattc
     5641 ctaaaagcgg tacaaaaatg acatctttca cttttataaa atcaatgatt ttaacaaata
     5701 aaaacgtacc gcaaatactg caaataacag caaatactag ttttaataaa atatgaccgg
     5761 ttggaaagaa caataaagca attaaaatac ctagtttagc ccattccatc gttccagctg
     5821 tagtcggact aacaaactta ttttgcatca tttgttgcat tatcaagcct gctaaagcca
     5881 acgaacttcc agcaattaaa atactcatcg tccttggtat tcggcttgag aataaaatat
     5941 tccgctgtga ctcagttaaa tgtagtaaat ctttaattga tagttcactc acacctatga
     6001 acaacgaaat aattgtcaac aatattagta atagaagcaa aatatttccc tttaataaat
     6061 acttcattac aaatttttct ccctttaaat taatgataat cattatcatt gataatattt
     6121 ctcattaata gtagcgtttt ttgaccataa tttcaatagc ctttcaaata atttagtgtc
     6181 aattttattg atatttgcaa ttaaactgaa atttaatttt tcggaatgtg tattttgttt
     6241 acttaaagta aaatagaaca cttaagattt tgatgtctgg gaatagtgga aatgataaaa
     6301 actactaatg attgattaag tagtggttct taacattagc ctcagctaat gtgtacttaa
     6361 aaataggaat acatgagtaa aactcatgtg gaagtgataa tttctaaagg aaaaagtttt
     6421 tctttatgtt ggggccccgc ccgaacttgc acaatattgt tagctgactt tccgcctgct
     6481 tttatgttgg ggccccgcca acttgcacaa tattgttagc tgactttccg cctgcttcta
     6541 tgttggggcc ccgccaactt gcacaatatt gttagctgac tttccgcctg cttctgtgtt
     6601 ggggccccgc caactactgc caatataaat agcattgtac atcttagagc attgatttct
     6661 tactcagact cataatgagt tagatacaca taaaaaaaga ccttcaacat gtaggagaca
     6721 agacgaaacg aatcgctatt tccctttaca tgtgaaggtc ttttaattta attgttattt
     6781 gttgtcaaat acaaagtcat catcttgtaa tgcttctacg tttaatgcta atacataacc
     6841 atcacctttt actgagaaga agtcatggtt tttagttgtt gtatctaagg cattctcaat
     6901 gattgggtta aattcacgtt cctcaaaata aggttcaaag cctaagtttg aaagtgcttt
     6961 gtttccatta tatttaacat agtttagcac atcttcagtg attccaagat catcgtataa
     7021 catttttgtg tatgactctt catttaaata caagtcattt agcaatttat acatttcttg
     7081 atctgctttt tgtttctcac tttcagatag ttcatttcgt aaatgctgtg catctaaacc
     7141 ggtaaataca ccatgaatag attcatctaa aagaatttta cgaatgattt cacctgatgt
     7201 cgtcattttc ccttgaccag caagatatag tggataatag aaacctgaga agaataagaa
     7261 tgtttctaaa aatacactcg taactctggc catatattgg tcgtatatcg aagcttcttt
     7321 accccaaagt ttgtgataat tagcaacaat tttatcagat ttatatttta aatggggttc
     7381 ctctaaaacc cattcatcta ataggtagtt tgtttcacta gatggtaata gtgttgtgaa
     7441 aatatgtgaa tagcttttcg cgtgtatttg ctccatcatc gccataaatg aataaactgc
     7501 ttttttcctt aagtcagtcg tatgtagcat aactaaaggc atgccatcat ctgcttgatg
     7561 tgtatctaag cctgttaaac cagctaatgc ttttttaaat gtgtcttgtt cagcttcaga
     7621 taaagtcttc caacttgcaa tgtcttttga tactttaaat tctgtttcaa cccacatttg
     7681 agatatattt tgtctccaaa acatattcgt catatcttct tgtgtgttcc aattaacagc
     7741 tatcatgaat ataatttcct cctgtaatgt tactcaataa ttgacaaata cagacatagc
     7801 agtctaatca tctgctaatt cagagcagat gattagctgt ttgtcatttt caacatttaa
     7861 ttgttagata gaacaacttg tacattcttc tacacttaat aatttatttc tagtatagta
     7921 aagtgatttt aatcctttat agtgcgcata tacatataat cttgctaact cacgtgtaga
     7981 aatttcagaa ttaacataaa ggatcgttga gataccttgg tcaatatgcg tttgaattgt
     8041 cgcaattaaa tcgattaatt tcatctgatc agtattgaat gctgatttgt agtaccacat
     8101 tgtttgtggt gataagaatg gcatagggta aaatgtttcc gcattaccat aagtacgacg
     8161 ttcaatttgg tcaacgattg gcattacaga acttgttgca ttttgaacat aagaaatact
     8221 ttgtgttgga gcaattgcta atctatatgc atgatataaa ccatattgtt caacatcttg
     8281 ttgtagtttc ttccaatcct cagaagtagg aatagccata ccatcgaata attcacgtac
     8341 tttttcgaat tgaggttcaa attcttgagt tgtatagaac tcgaaatatt tgccattagc
     8401 ataatcagac ttttcaaagt cttgatattt gataccacgc tctttagcga tttccattga
     8461 acgttcgatt gagtagaaat tcatcatcat aaagaagata tttgcaaaat cttttgcttc
     8521 ttctgactca taaccaattt tattttttgc taggtaaccg tgtaaattca tcacaccaag
     8581 accaactgaa tgtaattcac tgttagcttt tctaactcct ggtgcatttt gaatatttgc
     8641 tacatcactc acaacagtta atgcgtccat accagagtga actgaatctc tgaattttcc
     8701 gctttccatt acattaacaa tatttaatga gcccaagtta caagaaatat cacgtttaat
     8761 ttcgtcttca ataccatagt cattaataat tgaagtttct tgtagttgga aaatttccgt
     8821 acataagtta ctcattttaa tttgtccaat gtttgaattc ggatgcactc tgttagcatt
     8881 atctttaaac attaaatatg gataacctga ttgtaattgt gtttgcgcaa ttaaattcaa
     8941 catttcacgc gcattctttt tctttttctc aacatttggg tttgcaacca tgtcatcata
     9001 atatttttct aaatcgatat cgtctaatgt cacaccatat tcttctttaa ctgtatgagg
     9061 tgcaaacata taaaagtcct taccttcttt agctaaatcg aagaatttag atggaacaat
     9121 taaaccagtt gatattgtag ataaacgtaa atcttcatcc gcatttactt ttttagtatc
     9181 taaaaattct tctacatcat aatggaagat atttaagtac acagcaccag caccagggcg
     9241 ttgaccaagt tgatctgcat agctaaagcc accttcaagt gacttagcaa taggtaaaac
     9301 gcctttcgct acgcctttaa ttcctttaat tgcttcacca cgtgcacgca atttagataa
     9361 gttaattgca acgccgcccc caattttact taattgtttt gcagttgaat caataaagtt
     9421 aattgaattt aagctgtcat ccacttctaa taagaaacat gacactagct caccacgacg
     9481 cgcacggcct gcgtttaaaa atgttggtgt cgctggttga tatctttgtt caaccatagc
     9541 agaaataaat tgtttagctt gtgctttatt accatttgct aggtataaag caacaatggc
     9601 aacgtgttga ttatagtctt ctaagtattg acttttatca tttgttttca aagcgtaatc
     9661 tttgaaaaat ttactagctg acatataact tgcaaaatta aacgggattg attttgcata
     9721 atcagtgatt tcaattagat ccgcttcact ataaatatca aacacattga aataaaaatc
     9781 gttgtctact aaataacgta aacgctcgat ttcagtgtcg aagaagattg ttttgtcttt
     9841 tacttcttct aaataagcta ctaaagcttc ttggtctttt tctaaactaa agaatccatc
     9901 ttctcttcgt ttagtgacct cattatttaa ttcaatatga ttgtactttt tctcttccat
     9961 ggttttcatt aaaattaccc accttgttct taaattcaat aacgtctttg ttttttccat
    10021 gtaactcaaa cttcattaat aaagggacat tatactcttc tgatatcgtg cgacccgctt
    10081 ttgcgaaatt tagtccccaa tttcgattac cgctagctgc cacacctctg atgtattgat
    10141 gattaacttc taaaaaagat tgaacgggtt ctggtacttc tccaaatcca atagtgccag
    10201 taacgataat aaacggttca tgaactggtt ccatacaatt ttctgctgta atctcaagcg
    10261 tattttcaag ttctgttctc ttaataaaac gacggacatt tccagtaaat gaaaaatata
    10321 ttattttcat tggatcacct tctttcttca acccttttaa ataaagtagt cattccaatt
    10381 aaaaaatgct ttaacaacat ggttactatg gttatctcag cattgtatta actataatga
    10441 agctacttat tttctcaaat gtaaaccaat tgcatagatt tatatttgag aaaatagtag
    10501 cttatatggg ttgaatgtat aaaaatcact atatgtagtg tttacatcat tggatatctt
    10561 ccatttgctc agtacatttt ctaaaaatat gactattaat tgataataac tattaaattt
    10621 ctgtgttaaa ttacttttaa atgtaatttc ttcataaata aagcatttgc atacaaaaca
    10681 caagatattg tgtctttttc gtttcaccaa cactatatta tgtgtttcat tatacataag
    10741 acacactatg atttaaagtg ccattttcta atcgaatgtt cgtaaaacgt tccaactagg
    10801 caccaatact aaattagaaa aacttgaaca aatttaaaaa aattttttag tagatatcac
    10861 ttgatttttt taaatctgtg tcaatctcaa ttgtatcaac agaaatcaag aaaaagctta
    10921 ttagcttgat actgaattga tatttgtttt atgtaataac acaaacattc ataaaagtgt
    10981 aatgccctat tattccgaca aataaacaca gaacgtttgt tcgctacagt ctattatagt
    11041 ctttttatag taaatttcaa ctatttatgc acaacatgtt gttttatgct aatataaata
    11101 cgttaatttt atataaaaga ggcgataaaa ttgaatccta aagtaaaagg tatcattgcc
    11161 attttaattt cggctattgg tttcagtttt atgtcagtgt ttttcagact tgcaggtgac
    11221 cttcctgttt ttcaaaaatc attagcacga aacttagtag caatgtttat tccattattt
    11281 tttatatata aataccatca gccaatgttt ggcagacttt caagtcaacc cttattaata
    11341 acacgatcaa cacttggact tattggtgta ttgttaaata tttatgccat tgatcatatg
    11401 gtacttagtg atgccgattc attaatgaaa ctcaatcctt tctggacgat tttattaagc
    11461 attgttttct tacatgaaaa ggtaaggaag tatcaaatta cagcaatgat aattgctatt
    11521 ttaggtatgc ttttaatagt gaaacctgaa ttttcatcat ctatgattcc atcattagct
    11581 ggcttattct caggtatttt tgcagcatca gcatatacat gtgttcgagc acttagtaca
    11641 agagaagcac catatactat agtattttac ttctccttat tttctgtcat cgttttaata
    11701 cctttcactg catatactta tgaaccaatg agtcagatgc aaatacttta tctattaggg
    11761 gctggcttag ctgccgctgt gggtcaaatt ggtgttactt tagcatatag ttttgcagca
    11821 gcaaaagata tttctatttt tacgtatgca tctataattt tcacagcaat acttggattt
    11881 attctattcg gagaatctcc agatttctat gcaacattag gttacgtcgt tattatcggt
    11941 gcaagttatt acatgtttga aaaagcacgc cgagacgcca aaataataaa aaaataaatt
    12001 taaaggagcg ctttatatgg cacatggccg tcaacaagat gaattacaag atataacttt
    12061 attaggaaat caagacaata cttacaattt tgactatcgt cctgatgtat tagaatcgtt
    12121 tgataataag catcaaggtc gtgactattt cgtaaaattc aactgtccag aatttacatc
    12181 attatgtcca attactgggc aaccagattt tgcaactatc tatatttcat atattccaaa
    12241 tgttaaaatg gttgaatcaa aatctttgaa attatactta tttagtttca gaaatcacgg
    12301 tgattttcac gaagattgta tgaatattat tatgaatgat ttgatagagc ttatggaccc
    12361 acattatatt gaagtctggg gcaagttcac accacgtggt ggaatttcta ttgatcctta
    12421 tacaaactat ggacgtccaa attctaaata tgaaaaaatg gctgagcatc gtttgatgaa
    12481 tcatgattta tatcccgaaa aaatagataa tcgttaaatg tatcatttaa taaacacacc
    12541 aataagttga ttttcctaac ttattggtgt gtttttcatt tagcatacat aataggttac
    12601 attaaaataa cattttatac caaagtacac caaaagaata ttagtacacg aattaaacaa
    12661 catttttata gaaacctatt gcactttaac gtcaataagt atatttttat attatctcta
    12721 attaattgtg cgcgcttaat aacagaatat tctcaatatt tttatttttt tgtgatttgt
    12781 tggaatattt agttgataag gcacaatcaa atttacttaa actattgtat taggggaaga
    12841 aaggatggga tgtatacatg acacaacaaa actcccatgg aaatcaaatt caagacatac
    12901 ctcaaacagg atttttcggg catcctcgag gactaggcgt actcttcttt gtagagttct
    12961 gggaaaggtt tagttattat ggcatgcgtg ccctactcat tttctacatg tactttgccg
    13021 taacagataa tggccttgga attgataaaa caacagctat gtcaattatg tcagtttatg
    13081 gttcattaat ctatatgaca tcaataccag gcggatggat tgctgacaga attacaggca
    13141 ctagaggcgc tactttatta ggtgcagtct ttattattat cggacatatt tgtttaagct
    13201 taccatttgc attaatcggc ttattcacat caatgttctt catcattatt ggttcaggtt
    13261 taatgaagcc aaacatttca aatatcgttg gccgtttata tcctgaaaat gatagacgta
    13321 tggatgcagg ttttgttatt ttctatatgt cagttaatat gggtgcatta ttatcaccta
    13381 ttattttgca acactttgtt aatgttaaaa acttccacgg cggattcttg attgcagcag
    13441 ttggtatggc attaggttta gtatggtatg tacttttcaa ccgcaaaaac ttaggtagcg
    13501 ttggtatgaa acctactaac ccattgacac cagctgaaaa gaaaaagtat ggtcttatta
    13561 tcggaagtgt tgttttagca attgtattaa ttatcgttat tggtgcatta actaactcat
    13621 tatcatttaa cttagttagt aatactgttt tagtattagg tattgcatta ccaatcattt
    13681 acttcacttt aattattaga agtaaagatg tcactgatac tgaacgttct cgtgttaaag
    13741 catttattcc attatttatt cttggaatgg tgttctgggc tattcaagaa caagggtcta
    13801 atgtattaaa catatatgga attgaacatt cagatatgaa attaaactta tttggttgga
    13861 aaacaaactt tggtgaagcg atcttccaat caattaaccc attatttatt ttattactag
    13921 ctccaattat ttcactttta tggcaaaagc ttggaactaa acaacctagc ctgccagtaa
    13981 aatttgcaat tggtacgttc ttagcaggtg cgtcatacat actaattggt attgtaggtt
    14041 atgcatcagg ttcatcaaac ttttcagtta actgggttat tttatcgtac attatttgtg
    14101 ttatcggtga gctatgctta tcaccaacgg gtaatagtgc tgctgttaag ttagcaccta
    14161 aagcatttaa tgcccaaatg atgagtattt ggtacttaac taacgcttct gcacaagcaa
    14221 tcaatggtac tttagttaag ttaatagaac cactaggtca aacaaattac tttattttcc
    14281 taggtgttgt tgcaattatt gttacaacaa ttgtattagc aatctcacct ttaatcatca
    14341 aagcgatgaa aggtatacgt taatattgtt ggcctaattc aaaaaacagt aagtcattta
    14401 aatggcttac tgttttttta taggtttcta ttaattaaat tcaagatatc agtataaata
    14461 aaaacttaat atgctcatta tagacagcta taactatatt ttctcgtccc actctataga
    14521 aatcaatttc atttattacc attttctcta tttaaaaaca tatttttggt attaacaatt
    14581 aaaagtgggt atatatattt aatgaaccaa tttttagaaa gtaggctaaa ctatggaaaa
    14641 taaatataca catggtgtcc tcttttacca tgaacacagt ggattaaaaa atattaatca
    14701 aggtattggg gaagttacaa cagcattaag ttcaatttgt aagcatcttt ctattcaatt
    14761 gagtgaaaac gaaggtgaca ttattaaata ttgccaagaa atcaaaacta aaaactatgc
    14821 aaaagatgta gatatattat ttattcttgg cggtgatggc acggttaacg aacttataaa
    14881 cggtgttatg acacatgacc ttcaactccc tattggcatt ttaccaggcg gtacttttaa
    14941 tgattttaca aaaacgctaa atatagcacc taatcataaa caagctagtg aacaaatgat
    15001 ttctgcacaa gttggtacat acgatgtaat taaaataaat aatcaatatg cactcaactt
    15061 tgttggctta ggtctcattg ttcaaaacgc tgaaaacgta caagatggtt caaaagatat
    15121 atttggtaaa ttgagttata ttggatcaac tgtcaaaaca ctgctaaatc caacacaatt
    15181 taattatcaa ttatcaatag atgataagac atattctggc gaaacgacca tgatactaac
    15241 agcaaatggt ccattcattg gtggtagtcg tataccattg actgatttgt ctcctcaaga
    15301 tggtgaactg aacactttca tttttaatga acaaagtttc agtattttaa atgatatttt
    15361 taaaaagcgt gatagcatga attggaatga aattactcaa ggtattgagc atatacctgg
    15421 taaaaagatt tcacttacaa cagatccagc aatgaaagtt gatattgatg gcgaaatttc
    15481 attagaaaca cctattgata ttgaggttat accaaatgcc attcagttac ttactgtcaa
    15541 tgatttgtaa gcatccggaa tgatcttaac ccgatattat attaggtttg gagtgtaatc
    15601 ataagattca acgcacctta tattcgtttt tattagcttt aagctattac cctgtttcaa
    15661 aaacagacat ataattttgg cgcatgccac taaaatgatt gatgttgtat tttaaatcat
    15721 agtggtttat gcgtcttttt caaattctat aaaaaatcgg atgacgtgta atctgccata
    15781 gattaacaca ttcatccgat ttataataat aagataaact aacatttatt gagagcggga
    15841 cggaaatgat aaagaacgac taatgattga ttatgtagcg attctttatc attagtcaca
    15901 gctaatgtgt acttaaaaat atgaatgcat gagttacact catgcataag aaatactaat
    15961 ttctaaagaa aaagtatttc tttatgttgg ggcccacccc aacttgcatt gtctgtagaa
    16021 attggcgttc caatttctct atgttggggc cccgcagtca actactgcca atatagtgtt
    16081 gtagtgtcta agacataaaa gttcatctca gtcacaatta ctttatagcc tatccatcat
    16141 cttttctaca tgaaattttt caagtgatat attttatttc tcaatattat ctaaaaaata
    16201 ctgttctaca tctttccagc tatttacgcg ttcaaatcga tcatcattaa tattatgcac
    16261 tgctgtaaac ataatcggtg taccagtaaa aatttcaagc tgtctaggat tgtcatctat
    16321 taaataatca gctttaacga tgttttttct accacaaaaa acaaaatgct gaggatctaa
    16381 aaatggaaag aactctagta accattcata tttatcacta aatgatgttg gtacatccat
    16441 tgctgctgta gcaatatata catcataatg ttcagttaat tttttcacaa cttcttgtgc
    16501 atacggcatc actttaagat gtctgaagaa gcctgattct ctcaatactt ctgtaattaa
    16561 tccatcatgt tcaggaataa catgtttaag tttttgacca ttcaaagctt ccattttaat
    16621 acctaaatcc gctctaaaat tgacagcatc aatgatttct cctaatgtat ctgccaatac
    16681 ttcatccata tcaatcgcga ttgatttacg ggtcatttta atcttctcct caaaatatca
    16741 gtattgattc agtatagcaa aaaagcaatt gatacaaaac aatatcatct attgttgctt
    16801 tttacactga atactctcac ctcatcattc acactgcatt gagcttgaga cataaatcaa
    16861 tgttcaatgc tctacaaagt tatattggca gtagttgact gaacgaaaat gcgcttgtaa
    16921 caagcttttt tcaattctag tcaaccttgc cggcggggcc ccaacaaaga gaaattggat
    16981 tcccaatttc tacagacaat gcaagttggg gtgggacgac gaaataaatt ttgcgaaagt
    17041 atcatttctg tcccactccc cacttactat tcgtatttaa agtttgataa aacttctaac
    17101 attttatcat tttgttcttt aaaaccaatt gtaattctaa caccagttgg aaatggtcgc
    17161 gtaatacacc ctacatttaa aagtgcttca taaagttcat ttacccgctt tgtttttaca
    17221 aatataaaat tcgtttgact tggcaagaaa tactcacttt gaggtaattg ataaaatctt
    17281 tcgcgttcaa cactattttt atgtgttacc tcttttaaat attgttgatc ttcaagtgct
    17341 gcaactgctg cgtattcaga tatacgtgtc acattaaatg gtggtctaat gatgttccat
    17401 ttttcaatcg catgttcact tgctaccaca tatcctacac gtaaacccgc taatccatac
    17461 gcctttgaaa atgtacgtaa taagaaagca ttgtcatatt tttgttgcaa agcaagtgta
    17521 tccgggtagt cctctgctgt cacaaattca aaataagctt catctataat tactggtaca
    17581 tgtggaggta cttgagataa aaacgaatct aagctctcat gattaaaata tgtacctgta
    17641 ggattatttg gattacataa ccataccaat gacgtatctt cattaacttc ttttaaaata
    17701 ccttctaaat cgaagccacc atcttttaaa ggtacttgta tcacattagc tgattcaaca
    17761 atcgcattgt gataatattg accgaatgtc gcttcacttg taacaatagt atcccctggc
    17821 gttaatacag ctctagaaat cattaatata acttcatcta atcccgcacc aaataaaatg
    17881 cgtgattgat ctacatttaa atgtttacta atcgccgctt ttaatgtcgg tgatcctgtt
    17941 tcaggataat aatataactc atctaagtgt gctgatatcg cttctttaac tttaggcgat
    18001 ggtccataca aattttcatt tgatgcaagt ttatataaat ctccttcaat gccatacttt
    18061 tctttcaatg cccttggaga taaaccaggc tgatatgctg atagttgatt aagttgttct
    18121 ttcataataa aaacaacctc cttagaatta actgaaattt caaaaaactt atattcatta
    18181 tatcgctcta tgtttctaaa atgcaatgct actattttca catcataata gcttacattg
    18241 tgtttaacat gtcatatttt ttaatcatta ttgcatgttt aaattgaaca taattataga
    18301 tttaaatata acaacgccac ataagatata atttggtgtt acgcatctta tgtggcgttg
    18361 gtcgttattt gattaaccct tttgctttta aataatcttt cgcaactgta tatgggtctt
    18421 catttttaac tgttacttta tagttcatca tttgcatatc ttcatcagat attttgtttt
    18481 ctagtttgtt taacggtttc ttaatttctg gatgtttctt taaaaagctt tctttaaata
    18541 atggtgctcc ttgatatggt ggaaatacgt gcttatcatc ttttaacaca accatatcat
    18601 attgttttaa ttcagcgtca gttgaatatg catctattaa attaatatta cctttattga
    18661 tcgcttgata tctcaactta ggttccattg tacgtatgtt atctaaattt aaattataag
    18721 ccttttgaac agctttgtaa ccatctggac gatcattaaa ttccaatgta aatcctggtt
    18781 taagttgatc tttaacctta tttaaatcac caattgtacg tatattatgt tgtttagcaa
    18841 aatcacgttt tacagctaaa gcatacgtat tgttatactt cattggtttt aacatagtca
    18901 tttgatattt cttttcaaga ctttgcttag cttgttcata aacttttttc tcttcttttg
    18961 acttcaatgg ttcttttgtt aattcaccta aaactgttcc agtaaattct aaatacccat
    19021 ctatatcgtc agattttaaa gcattaaata aaaatgctgt tttgcccata ccatctttca
    19081 cttctacagt atttttggtc tcttcttcta ttaaaatttt atacatattt gtaataatcg
    19141 atggctcgga gccaagcttt ccagctaacg taattttatc acctttttgt gcaaacatag
    19201 gaatagcgat agccagtata ataatcatca ctataacacc taacgtcatc aataactttt
    19261 tataagataa tttagccata aatcttaaaa ttaaatcaaa tataattgcc aataaggctg
    19321 ctggaattgc acctaataat atcaacgatg cattgttacg gtctatacct aataaaatta
    19381 aatctcctag tccgcctgca ccaattaatg ctgctagtgt tgctgtacct ataattaata
    19441 ccatagccgt tcttacacca gccattataa caggcattgc tatcggaagt tcgactttag
    19501 ttaaacgtct aaatggtttc atacctatac ctttagccgc ttcaatgagt gatggatcaa
    19561 cttctttaat tccagtatac gtattcctta aaattggtaa caacgcatac actacaagtg
    19621 caataattgc tggcacacga ccgataccaa ataaaggaat cattaaacct aataatgcca
    19681 acgatggtat ggtttgaaga attgccgcaa tattcattac gatttcagat atcgttttag
    19741 tcttcgttaa taaaatacct aatggtaccg caatagcagt tgcaatcaat aatgcgataa
    19801 atgatatttg aatatgttct atcattgtcg aaaagagttg ccccttacgt tcactcaata
    19861 tgtcgaaaaa gttagtcatg ttgagctacc tcctttttct gggacaaata tttgaagata
    19921 tctttcctat caataacata ttgacctacg ctatcttctt gcatgacaat gacacgctcg
    19981 ctctctgata aaagttgata caatacttca attggttgat tgtcataaac aattggataa
    20041 gcgctcatag atgtaacctc atcgattggt ttcataatat ccaagtcacg gataattgcg
    20101 ttctcttcaa cacatggcgc atcatcttct aaatgactac ccataaattg tttaacaaat
    20161 tcactttgag gattattttt aaatccttct ggtgtgtcaa tttgttcaat atgcccttca
    20221 ttcaaaagac aaatcttatc accaagtttc atcgcctctt gaatatcatg tgtaacaaat
    20281 atgattgtct tcttaatttt agtttgtaat tcaattaaat catcttgaag tttttctcgg
    20341 ctgattgggt ctaatgcact aaacggttca tccattaaaa taactggtgg atcagctgct
    20401 aacgcacgta taactcctac acgttgtcgt tgcccccctg acaattcatc aggttttctg
    20461 tttttatatt tttcaggttc taatccaacc atttcaagta attcatctac tcttttatct
    20521 atatcttttt ctttccactt tttcatttgt ggcacttgtg caatattttc tttgattgtc
    20581 atatgtggga ataatgcaat ctgctgcaat acgtatccaa tatcccaacg catttcgtat
    20641 actggataat cacttattgg tttatcttta aaataaatat aaccttcact taagtgaatg
    20701 agtcgattaa tcatttttaa tgtcgtagtt tttccacaac ctgaaggtcc aattagcaca
    20761 aaaaattcac cctcattaat attgaaacta atgttatcga cagcaacatg tttgccataa
    20821 cgcttagtta catttttaaa cttaatcact ttgccacctc tttttttctc atagcataaa
    20881 accgagatta tatgtatgta tt
//
LOCUS       DAMQWL010000039        20765 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.039, whole genome shotgun sequence.
ACCESSION   DAMQWL010000039 DAMQWL010000000
VERSION     DAMQWL010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 20765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20765
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.039"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(150..1901)
                     /gene="srrB"
                     /locus_tag="PF788_001280"
     CDS             complement(150..1901)
                     /gene="srrB"
                     /locus_tag="PF788_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     SrrB"
                     /protein_id="HDG6303545.1"
                     /translation="MMSRLNSVVIKLWLTIILIVTTVLILLSIALITFMQYYFTQETE
                     NAIREDARRISSLVEQSHNKEEAIKYSQTLIENPGGLMIINNKHRQSTASLSNIKKQM
                     LNEVVNNDHFDDVFDKGKSVTRNVTIKEKGSSQTYILLGYPTKAQKNSHSKYSGVFIY
                     KDLKSIEDTNNAITIITIITAVIFLTITTVFAFFLSSRITKPLRRLRDQATRVSEGDY
                     SYKPSVTTKDEIGQLSQAFNQMSTEIEEHVDALSTSKNIRDSLINSMVEGVLGINESR
                     QIILSNKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK
                     IEQGGKSGVVVTVRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE
                     PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQ
                     QADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENESED
                     ILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVK
                     SELGKGTTFIIKLPKPE"
     gene            complement(1882..2607)
                     /gene="srrA"
                     /locus_tag="PF788_001281"
     CDS             complement(1882..2607)
                     /gene="srrA"
                     /locus_tag="PF788_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator SrrA"
                     /protein_id="HDG6303546.1"
                     /translation="MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAME
                     NNYACILLDLMLPEMDGIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVK
                     PFSPREVVLRVKALLRRTQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLT
                     PKEYELLIYLAKTPNKVFDREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAA
                     HMIQTVWGVGYKFEVKSNDEPAK"
     gene            complement(2740..3477)
                     /locus_tag="PF788_001282"
     CDS             complement(2740..3477)
                     /locus_tag="PF788_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDG6303547.1"
                     /translation="MTKELERLQKRIANSGYTSRRKAETLISEGKVKVNGTTVTELGT
                     KVKPSDTIEVEGIKIELEDKIYILFHKPTQVITSVSDDRGRTVVTDYFKDIEARIYPV
                     GRLDYDTSGLLLLTNDGEFTNLMTHPRYQIKKKYVAKLKGYLMREEVKALEKGIELED
                     GMTQPAEVKVKKQDKDKNTTLVEITITEGRNRQVRRMFEHFGHQVTKLSRIEYGPLNV
                     VGLNAGEGRVLTPHEVKVMRHLAEHGK"
     gene            complement(3470..4012)
                     /gene="scpB"
                     /locus_tag="PF788_001283"
     CDS             complement(3470..4012)
                     /gene="scpB"
                     /locus_tag="PF788_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HDG6303548.1"
                     /translation="MDNHGILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSS
                     HGLMIQRFGMTYVLTTKKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDI
                     ELIRSINSDGAVKTLIAKGLVEAKVVNEQRSQQLITTDLFLNVFGISNIEDLPTTEED
                     DEEMDAFFSNLVNQKGENND"
     gene            complement(4005..4736)
                     /locus_tag="PF788_001284"
     CDS             complement(4005..4736)
                     /locus_tag="PF788_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HDG6303549.1"
                     /translation="MYEVKLDAFNGPLDLLLHLIQKFEIDIYDIPMQALTEQYMQYVH
                     AMKQLEINIASEYLVLASELLMIKSKMLLPQSTSDMDVDDDPREDLVGRLIEYQNYKE
                     YTAILNDMKEERDFYFTKRPTDLSHLETDESWDPNHTIDLTELIVAYQRVKNRVELNT
                     PKSVEIRKETFTIQQATEQVTSRLKDKDHFNFFSLFTFSEPIEQVVTHFLAILEMSKA
                     GIINIEQQRNFEDINIIRGVNYHFG"
     gene            4828..5334
                     /locus_tag="PF788_001285"
     CDS             4828..5334
                     /locus_tag="PF788_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HDG6303550.1"
                     /translation="MQQALINFYYQFHTKQHYFLCHDILEDAWKAENNYSKQDAVVSL
                     ILFATACYHYRRNNLKGAYKSFNKSKEIIQNAKDRDALYLNLNDYQLLIEQQIAKLNA
                     AKPFSSVILPITPVFERIIKANYPDYDYNQETATDPFIVDHHMRRDRSEVIAAKEEAI
                     QLRKHRRN"
     gene            complement(5412..6299)
                     /gene="xerD"
                     /locus_tag="PF788_001286"
     CDS             complement(5412..6299)
                     /gene="xerD"
                     /locus_tag="PF788_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDG6303551.1"
                     /translation="METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISH
                     IDFIDRQLIQECLGHLIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPK
                     YDKKLPDVLNVDEVLALLETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNL
                     IMGFVRVFGKGDKERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSR
                     QAIWKMIKQNGVKANIKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLY
                     THVSKSQIRKMYNQFHPRA"
     gene            complement(6348..6797)
                     /locus_tag="PF788_001287"
     CDS             complement(6348..6797)
                     /locus_tag="PF788_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDG6303552.1"
                     /translation="MEERLNRVKQQLQQSSYKLTPQREATVRVLIENEKDHLSAEDVY
                     LKVKDKAPEIGLATVYRTLELLAELKVVDKINFGDGVARFDLRKEGAKHFHHHLVCME
                     CGRVDEIDEDLLPEVENRVENEFNFKILDHRLTFHGVCETCQAKGKG"
     gene            complement(6902..7444)
                     /locus_tag="PF788_001288"
     CDS             complement(6902..7444)
                     /locus_tag="PF788_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDG6303553.1"
                     /translation="MDLNEKTIDRTVIYNGKIVDVEIHTVTLPNGETSTRELVYHNGA
                     VAVCAVTPKKEVVLVKQYRKPVEKPLLEIPAGKLEDDEDRVEAAKRELEEETGYIAKE
                     LTHVVDMYGSPGFCDEQLSIYFTDNLEEGTVHLDEDEFVEVIKVPIENVKSMLMNKEI
                     EDAKTIIALQHLLLNYNHSK"
     gene            7526..8434
                     /locus_tag="PF788_001289"
     CDS             7526..8434
                     /locus_tag="PF788_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDG6303554.1"
                     /translation="MQKNILKSGISLSELGLGCMSLGTDLKKAEQIIDCAVENGITYF
                     DTADMYDKGINESVVGKALLKYQQRDDIFIGTKVGNRLTKDGSTTWDPSKSYIKEAVK
                     GSLKRLGIDHIDLYQLHGGTIDDPLDETISAFDELKQEGIIRAYGISSIRPNVIDYYL
                     KHSQIETIMSQFNLIDNRPESLLDAIHNNDVKVLARGPVSKGLLTSNSVNVLDNKFKD
                     GIFDYSHDELGETIASIKEIESNLSALTFSYLTSHDVLGSIIVGASSVDQLKENIENY
                     HTKVSLDQIKTARARVKDLEYTNHLV"
     gene            complement(8650..8898)
                     /locus_tag="PF788_001290"
     CDS             complement(8650..8898)
                     /locus_tag="PF788_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303555.1"
                     /translation="MNCQSESVVRLCVRYAEQLSVFEEFTVLDILGDISVDQISDGTL
                     YYTCEKFKLLVLQGNVLGVQIITNNDESTCEVKYRKMF"
     gene            complement(8914..9669)
                     /locus_tag="PF788_001291"
     CDS             complement(8914..9669)
                     /locus_tag="PF788_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDG6303556.1"
                     /translation="MKGQHFIVTGGTSGLGLSIVRKLLENKVHVTLLVRDVDKATRIF
                     EQELGKTINVIPCDLNDLKSIQALQFEDNTSFDGFIYSAGLGYFKSISDHSFSEMIET
                     YQLNLISFNVLYTVLRPYLTSNAHIVGISSQAAFSTQANAAHYGASKAGFYALMNALR
                     LESPNLHIMTVNVGPIDTPFHQKADPSMKYAKKMGEIMLDANQLAEDIIYGIKTKQLE
                     INRPKWMHHALKMYQIAPRFFERCFPKLFKNKA"
     gene            9811..10626
                     /gene="proC"
                     /locus_tag="PF788_001292"
     CDS             9811..10626
                     /gene="proC"
                     /locus_tag="PF788_001292"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002485765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDG6303557.1"
                     /translation="MKLVFYGAGNMAQAIFTGIINSSNLDANDIYLTNKSNEQALKAF
                     AEKLGVNYSYDDATLLKDADYVFLGTKPHDFDALATRIKPHITKDNCFISIMAGIPID
                     YIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLVKAFGSVIEVS
                     EDHLHQVTAITGSGPAFLYHVFEQYVKAGTKLGLEKEQVEESIRNLIIGTSKMIERSD
                     LSMAQLRKNITSKGGTTQAGLDTLSQYDLVSIFEDCLNAAVDRSIELSNIEDQ"
     gene            complement(10731..11651)
                     /gene="rnz"
                     /locus_tag="PF788_001293"
     CDS             complement(10731..11651)
                     /gene="rnz"
                     /locus_tag="PF788_001293"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HDG6303558.1"
                     /translation="MEVTFFGTSAGLPTKERNTQAIALNLEPYSNSIWLFDVGEGTQH
                     QILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVE
                     MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTIN
                     VEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKPCSNE
                     RVISRDADVMVHEATYIDGEKHLANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNT
                     EDINEIYQTLIQNEDTPNFNFVKDFDSFKI"
     gene            11964..13448
                     /locus_tag="PF788_001294"
     CDS             11964..13448
                     /locus_tag="PF788_001294"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDG6303559.1"
                     /translation="MSTKNKHIPCLITIFGATGDLSHRKLFPSIFHLYQQDNLDEHIA
                     IIGIGRRDITNDDFRNQVKSSIQKHVKDTNKIDAFMEHVFYHRHDVSNEESYQELLDF
                     SNELDSQFELKGNRLFYLAMAPQFFGVISDYLKSSGLTDTKGFKRLVIEKPFGSDLKS
                     AEALNNQIRKSFKEEEIYRIDHYLGKDMVQNIEVLRFANAMFEPLWNNKYISNIQVTS
                     SEILGVEDRGGYYESSGALKDMVQNHMLQMVALLAMEAPISLNSEDIRAEKVKVLKSL
                     RHFQSEDVKKNFVRGQYGEGYIDGKQVKAYRDEDRVADDSNTPTFVSGKLTIDNFRWA
                     GVPFYIRTGKRMKSKTIQVVVEFKEVPMNLYYETDKLLDSNLLVINIQPNEGVSLHLN
                     AKKNTQGIETEPVQLSYSMSAQDKMNTVDAYENLLFDCLKGDATNFTHWEELKSTWKF
                     VDAIQDEWNMVDPEFPNYESGTNGPLESDLLLARDGNHWWDDIQ"
     gene            13678..14544
                     /locus_tag="PF788_001295"
     CDS             13678..14544
                     /locus_tag="PF788_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014373838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDG6303560.1"
                     /translation="MDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKM
                     IVGLSPEAYARARKMTLAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQ
                     ASTKKDELQIQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPD
                     FLEDLLIDGKIKELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPG
                     KHCAKFNLQGEIDYATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQL
                     WIPVKQSPYDED"
     gene            complement(14627..16276)
                     /locus_tag="PF788_001296"
     CDS             complement(14627..16276)
                     /locus_tag="PF788_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HDG6303561.1"
                     /translation="MNKQWWKEAVAYQVYPRSFNDSNHDGIGDLPGMIDKLDYLKDFG
                     IDVIWLSPMFKSPNDDNGYDISDYQEIMDEFGTMEDFDRLLKGVHDRGMKLILDLVVN
                     HTSDEHPWFIESKSSKDNPKRDWYIWQDPKPDGSEPNNWESIFNGSTWEYDANTEQYY
                     FHLFSKKQPDLNWGNPEVRDAVFEMMNWWFDKGIDGFRVDAITHIKKTFEAGDLPVPE
                     GKTYAPAFDVDMNQPGIQTWLQEMKDRSLSKYDIMTVGEANGVSPDDADDWVGEENGK
                     FNMIFQFEHLGLWNSGDSHFDVNSYKSVLNRWQKQLENKGWNALFIENHDQPRRVSTW
                     GDDDKYWYESATSHAAVYFLQQGTPFIYQGQEIGMTNYPFESIETFNDVAVKNDYQIV
                     KAQGGDVDALLAKYKDENRDNSRTPMQWDDTLNGGFTNGEPWFPVNPNYKTINVAQQL
                     EDEHSVLQFYKDLIQLRKSNDVYVYGQFDLVDAENSQVFAYTRTLNEKQVLIVGNLTN
                     HEAELTVPFDLSHGEVKLFNYDAKVNLKQLRPYEACVIELN"
     gene            complement(16292..17311)
                     /locus_tag="PF788_001297"
     CDS             complement(16292..17311)
                     /locus_tag="PF788_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDG6303562.1"
                     /translation="MVTIKDVALKAGVSPSTVSRVIKGNQRISEATISKVKKVMEELN
                     YFPNTAARTLITNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVS
                     NNMNDLMDEVYKMIKQRMVDAFILLYSKENDPIKQMLIDESMPFIVIGKPTSDIDHQF
                     THIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETIASQNKINYQI
                     IETSNEREVIFNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMT
                     ATFNDSYLTEIASPPQTCIDIKPRMLGQQAGAAILNILKNKAQDVIELVIIDTELKIR
                     KSTQR"
     gene            complement(17312..17566)
                     /locus_tag="PF788_001298"
     CDS             complement(17312..17566)
                     /locus_tag="PF788_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303563.1"
                     /translation="MVNVYLIFKMAKVTILQLVTKQSILIFIQTFILIFGLNFSMKVL
                     FLSFYAIVCTNLLTFLESVTKLVLYSGWKRFPMQKLTGGD"
     gene            complement(17505..17876)
                     /locus_tag="PF788_001299"
     CDS             complement(17505..17876)
                     /locus_tag="PF788_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDG6303564.1"
                     /translation="MEKLNQVMLYVDDVEKAKAFWTETLEFVVVSETPLAEDYVAVEV
                     SPTKDAETSLTIMAKEFIEKHSPEVNLGTPSLMFKEKNFDALYSKLNDLGLTGHDIVE
                     MNGQRVFNFQDGQGNYFAVSD"
     gene            complement(18095..19501)
                     /gene="gndA"
                     /locus_tag="PF788_001300"
     CDS             complement(18095..19501)
                     /gene="gndA"
                     /locus_tag="PF788_001300"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HDG6303565.1"
                     /translation="MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEE
                     SKGKNIHPTYSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNT
                     NYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAA
                     KAKDGASCVTYIGPNGAGHYVKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTF
                     KDWNAGELESYLIEITGDIFMKLDENKEALVEKILDTAGQKGTGKWTSINALELGIPL
                     TIITESVFARFISSIKEERVNASKELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQ
                     GFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYF
                     KNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQAQRDYFGAH
                     TYERKDKEGVFHTQWIEE"
     gene            complement(19569..20702)
                     /locus_tag="PF788_001301"
     CDS             complement(19569..20702)
                     /locus_tag="PF788_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HDG6303566.1"
                     /translation="MINEQRLLNTFFELVQIDSETGNESTIQPILKEKFIALGLDVKE
                     DEAAKHPKLGANNLVCTMNSTIEEGEVPKLYLTSHMDTVVPAINVKPIVKDDGYIYSD
                     GTTILGADDKAGLAAMLEVLQVIKEQQIPHGQIQFVITVGEESGLIGAKELNSELLDA
                     DFGYAIDASADVGTTVVGAPTQMLISAKIFGKTAHASTPKEGVSAINIAAKAISRMKL
                     GQVDEITTANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASE
                     LGGKAVVTVEQSYPGFKINDNEAVVKIAQESARNLGLSANTIISGGGSDGSIINTFGI
                     PSVILGVGYEKIHTTNERMPIKSLNLLASQVLEIIKIVARHSK"
BASE COUNT         6645 a         3820 c         2995 g         7305 t
ORIGIN      
        1 ataaattagt aatatattta atagttgata ttcgcaaaaa ccctaagttc taatccacat
       61 acaaaattcc ccacatcaat caaaaaacgc atgctataaa ttagagtctc taatcaataa
      121 catgcgttct gaaataacta tattcaattt tattctggtt ttggtagttt aataataaat
      181 gttgtgcctt tccctaattc gcttttaaca tctatggaac caccatgctc ttcgataatc
      241 attttacaaa tgaacaaacc taaaccggta ccttgtttac ctcgcgttct cgctgcatca
      301 actttataaa aacgatcaaa tacttgttgt aaatgttctg gtgcaatgcc tgtacctgta
      361 tctttaatgt ataaaatatc ttcgctttca ttttcatcac aagtaattgc aatttcatct
      421 ccaggtttcg tataacgtga tgcattatca attaagttcg ttagtacttg gtccatgcga
      481 tccatatcat aactccaaac acgcttctta caataattaa aagtcatatt tagacctaaa
      541 tcatcagctt gttggcgata cttaattttc atcttatcta gtaacgctgc aataggctga
      601 acttctttat ttacggataa cccttcagca tccatgcgtg cgacatttaa caattcatta
      661 actaaacgat ttaaacgttt cgattcatca aggacaatgg caagcgattc ttttatttca
      721 tccggttctg taacaatacc atctacaatt gattcagtat aaccttgaag taatgatatc
      781 ggtgtacgta attcatgtga tacattagca atgaaatctt tcttcatttg atctagattg
      841 tgctcattag tcatatcacg aactgtcaca acaacaccac ttttacctcc ctgttcaatc
      901 ttgtcgatat agcttgtggt cacaacaaag aatcgtgcat tcatttctaa atcgcgcatt
      961 tcagtttgtt ttgatttaaa agtatcttct atttgtctta ataagaaagc tttagcatct
     1021 tcatcaatat tgtccataat atcattcgcc atcttattag ataagataat ttgtcgactc
     1081 tcattaatac ctaggacacc ttctaccata gagttaatta agctgtctct aatattttta
     1141 gatgtggata atgcgtcgac atgctcttcg atttctgtac tcatctgatt aaatgcctgc
     1201 gataattgac caatttcatc tttcgttgtg acagaaggtt tataagagta atccccttca
     1261 gatacacgtg tagcttggtc tcttaaacgt cttaaaggtt ttgtaattct tgacgataag
     1321 aaaaacgcaa agactgttgt aattgttaag aaaataacag ccgtaattat ggtgataatc
     1381 gtaatagcat tatttgtatc ttcgattgat ttcaagtctt tatatataaa gactccacta
     1441 tatttgctat gactattctt ctgtgctttt gttggatagc ctaacaaaat atatgtttga
     1501 gatgagccct tttctttaat cgttacattt cgagtaacag atttaccttt atcaaacaca
     1561 tcgtcaaaat ggtcgttgtt gactacttca ttcaacattt gctttttaat attagaaagt
     1621 gaagccgttg attgacgatg tttattattt ataatcatca acccaccagg attttcaatt
     1681 aatgtttgac tatattttat tgcttcttct ttattatgtg attgttcgac cagtgaactt
     1741 atacgtctag catcttctct tatggcattt tcggtttctt gtgtgaaata gtattgcata
     1801 aaggtaatta aagcaatact taataaaatt aaaactgtcg tcactattaa aataatagtt
     1861 aaccacagtt taattacgac actatttagc cggctcatca ttagatttaa cctcaaattt
     1921 atacccaacg ccccagactg tttgaatcat atgcgcagct tcactagaca cacgatttaa
     1981 cttttctcta agtcgtttaa catgagtatc aactgttctt aaatcaccat agaattcata
     2041 atgccaaact tcttttaata attgttcacg gtcaaatact ttatttggtg ttttagctaa
     2101 atatattaat aattcgtact ctttaggagt caaattaact tcttgattat cagcaagtac
     2161 gcgatgtgca tcattatcta tttctaaatg tttaaattca atcacatcac gtgcgtgagg
     2221 ttcgctttgt tctacagttg tagattgcgt tcttcttaga agtgctttaa ctcttaagac
     2281 tacttctctt ggtgaaaatg gtttgacgat ataatcatct gcaccagatt caaaaccttc
     2341 aacacggttt gtttcttcac ctttagcagt caacataata atcggtgttt gtttatgttc
     2401 acgcaattta gttgccacct ggataccatc catttcaggc aacattaaat ctagtagtat
     2461 gcaagcataa ttattctcca ttgcaagttc ataagcctct tggccattac ttgcttcatg
     2521 gatttcaaaa gattctcttt ctaaatacat tttaagtaat cttctgattc tatcctcatc
     2581 atctacgata agtatttcgt tcgacataca ggtcatacct cccacacatg cttttcttta
     2641 caaaagtatt atatcacagg aaagcgcata cagttattaa aaacctaaaa ttttgtgaaa
     2701 aaattctcaa actttgtgat aaatacatat tttatttaat tatttcccat gttctgctaa
     2761 atgacgcatc acttttactt catgaggcgt caatacacgt ccttcaccag cattcaaacc
     2821 gacaacattt aaaggcccat attcaatacg agacagtttc gtcacttgat gaccaaaatg
     2881 ttcgaacatt cttctgactt ggcgattacg accttctgta attgtaattt caaccaatgt
     2941 tgtgttttta tctttatctt gtttcttaac tttcacttca gccggttgcg tcataccatc
     3001 ttctaattca ataccttttt ctagcgcttt cacttcttct ctcattaaat aaccttttaa
     3061 tttcgcaaca tattttttct taatttgata tcttggatgt gtcattaaat tagtaaattc
     3121 accatcattt gtgagtaata acaatccaga agtatcatag tctaaacgac caacaggata
     3181 aatacgtgct tctatatctt taaagtaatc tgtaaccact gtacgtcctc tatcatcaga
     3241 tacacttgtt atcacttgag ttggtttatg gaataaaatg taaattttgt cttctagttc
     3301 tattttaata ccttcaactt caatcgtatc tgatggcttc acttttgttc ctaattcagt
     3361 gacagtcgta ccattcactt tcacttttcc ttcagaaatt aaagtttctg ccttacgtct
     3421 tgaagtataa ccgctattag ctatacgttt ttgtaatcgt tctaattctt tagtcattat
     3481 tttctccttt ttgattgact agattactga aaaaagcatc catttcttca tcgtcttctt
     3541 cagttgtcgg caaatcttct atattggaaa taccaaatac atttaaaaat aaatcagtag
     3601 taattaactg ttggctacgc tgttcattaa ccactttagc ctcaactagt cctttggcaa
     3661 tcaatgtctt aactgcacca tctgaattga tactacgaat taattcaata tcacttcttg
     3721 ataatggctg gttataagca ataattgata gtacttccat tgctgcttgt gataatttca
     3781 tttgtgactt ttgttcaatt aattgttcaa tatacgttgc cgcttctttt ttagtcgtta
     3841 aaacatacgt cattccaaat cgttgtatca ttaatccatg tgatgaataa ttttcaatta
     3901 attcaacgag ttggtctttc gacatatcta atatttctaa tagttgtttt tcatctaaac
     3961 cttcatcgcc agctgtaaat aaaagcgact ctaatatacc atgattatcc aaaatggtag
     4021 ttcactcctc taataatgtt aatatcttca aaattacgtt gctgctcaat attaattatt
     4081 cctgcttttg acatctctaa aatagctaaa aagtgagtga ctacttgttc aattggctca
     4141 gaaaacgtaa acagactaaa gaagttaaaa tgatctttat ctttcaatct cgatgtcact
     4201 tgttctgtag cttgttgaat ggtaaatgtc tcttttcgga tttcaacaga tttaggtgta
     4261 tttaactcaa ctctattttt aactctttga taagctacaa ttaattcagt taaatcaatc
     4321 gtatgatttg gatcccaaga ttcatctgtt tccaaatgag ataaatctgt cggtcttttt
     4381 gtaaaataaa aatctctttc ttctttcatg tcatttaaaa tagcagtata ttctttataa
     4441 ttttgatatt ctattaaacg cccaactaaa tcttcccgtg ggtcatcatc aacatccata
     4501 tctgatgttg attgtggtaa tagcatctta cttttaatca ttaagagttc tgacgctaat
     4561 actaggtatt cacttgcaat attaatttca agctgtttca ttgcatgaac gtactgcata
     4621 tactgctctg ttaatgcttg cataggaata tcataaatat ctatttcaaa tttttggata
     4681 agatgcagca ataaatctaa tggtccattg aaagcatcta atttaacttc atacataata
     4741 tctacctcgt attgcgtcat atgtgcataa ttctctaaaa tattatagca tgaaaataac
     4801 ttacttttaa attggggtga taacaaaatg caacaggcac tgataaattt ctattatcaa
     4861 tttcatacta agcaacatta tttcctatgt catgacattt tagaagatgc atggaaagct
     4921 gaaaataact acagtaagca agatgcagtt gttagtttaa tcttgtttgc aactgcttgt
     4981 taccattatc gccgcaataa tttaaaaggc gcctataagt cttttaataa atctaaagaa
     5041 ataatacaaa atgctaaaga tagagatgcg ttatacctta atttaaatga ttatcagttg
     5101 ttaattgagc aacagattgc aaaattgaat gcagcaaagc ctttttcatc tgttatatta
     5161 ccaataactc cagtctttga acgcatcatc aaggccaact atccagacta tgattataat
     5221 caggaaacag caacagatcc ttttattgta gaccatcaca tgcgccgtga tcgttcagaa
     5281 gtgattgcag caaaagaaga agcgattcaa ttaagaaaac atagacgtaa ttaatcaacc
     5341 aatttaaaaa agccacaata gcacagacat ttttagtcat gtgtattgtg acttttgagt
     5401 tattgttcac tttatgctct aggatgaaat tggttataca tttttctaat ttgagatttc
     5461 gaaacatgtg tatagagttg ggtagtagat atgtcagagt gacctaacat ctcttgcact
     5521 gctcttaaat ctgcgccatt ttccaataaa tgtgtcgcaa aagagtggcg taacgtatgt
     5581 ggcgttaacg tctttttaat gtttgccttt acaccatttt gtttaatcat tttccatatt
     5641 gcttgtcgtg ataaaggttt accatgcata tttaaaaata agacttcagt aacagtcttt
     5701 tttaaaagtt gcggtctaat cgtttcaata taagtagtta agtactcaat gactgcgtcg
     5761 cctaatggta caattctttc tttatcgcct ttaccaaata cgcgtacaaa tcccattatt
     5821 aagttcacgt tttctaactc taaatgtatc aattcagata cacgcattcc cgttgcgtac
     5881 agaagttcta acatcgtacg atcacgatat ccattaattt tatttaaatc tggcgtttct
     5941 aataaagcca acacttcgtc aacatttaaa acgtcaggca attttttgtc atattttggt
     6001 gaatctaata ataccgttgg atctttcgcc gcatattttt ctcttatagc aaattgatga
     6061 aaactacgga ttgttgaaat aaatcgcgca atagatttag cagattgccc ttggtctatt
     6121 aaatgcccca aacactcttg aattaattgt cgatctataa aatcaatatg cgagatatga
     6181 tgttcagtca tataatcttg atactttttc aaatcacgtc tataagcacc aattgtgtta
     6241 gaacttagtc ctttttcaat ttgtataaaa cgcaaatatt cttcaataat tgtttccata
     6301 accacacctc taaaaaaagc gaaggttaat ttaacctacg caatttacta tcctttacct
     6361 ttagcttggc acgtttcaca cacaccatgg aaagttaaac gatgatctaa aattttaaaa
     6421 ttgaactcat tttcaactcg attttcaact tctggtaaca aatcttcatc gatttcatct
     6481 acacgaccac attccataca tactaaatga tggtggaaat gttttgcgcc ttcttttctt
     6541 aaatcaaaac gagcgacgcc atcaccaaag ttaattttgt cgacaacttt tagttcagct
     6601 aacaactcta acgttctgta tactgtcgcc aagccaattt caggcgcttt atcttttact
     6661 ttcagatata cgtcttcagc acttagatga tctttttcat tttcaattag aactctaaca
     6721 gtagcttcgc gttgtggcgt tagcttatat gatgattgtt gtaattgttg cttaacgcga
     6781 tttaatcgtt cttccaacga tgtccactcc cctactaata attaaaatca ttacaaatta
     6841 tttcaaactt cacaattaaa actaacagtt ttctcaataa aatgcaagct tttctcattt
     6901 gttatttaga atgattataa tttaataata ggtgttgcaa tgcaatgata gtcttcgcat
     6961 cttctatttc tttattcatt agcatcgatt taacattctc aatcggaact ttaatgactt
     7021 cgacaaattc atcttcatct aagtgaactg taccttcttc taaattatcc gtaaaatata
     7081 ttgataattg ttcatcgcaa aaacctggtg aaccatacat atctacaaca tgtgttaact
     7141 ctttggcaat atatcctgtt tcttcttcta attcacgttt tgccgcttcg actctatctt
     7201 catcatcttc taatttacca gctggaattt ctagcaatgg tttttctact ggtttacgat
     7261 actgtttcac taatacgact tcttttttag gtgtcactgc acaaacagca actgcaccat
     7321 tatgataaac taattctctt gttgacgttt caccgtttgg taatgtcact gtatgaattt
     7381 ctacatctac aattttgcca ttataaataa ctgttcgatc aattgttttt tcatttaaat
     7441 ccattataat cacgttcctt taaattcata ttatatattg atacactatg cttgttagct
     7501 aaagtgtatc gaaaggagaa cagacatgca aaaaaatata ttaaaaagtg gtatttcatt
     7561 atctgaatta ggtctaggtt gcatgagttt aggtacagat ttaaaaaaag ccgaacaaat
     7621 tatagattgt gctgttgaaa atggtatcac ttattttgat acagcagata tgtacgataa
     7681 aggtataaat gaatcagttg ttggtaaggc acttcttaaa tatcaacaac gcgatgatat
     7741 ttttattggt acaaaagtag gcaatcgttt aacaaaagat ggcagtacaa catgggatcc
     7801 gagtaaatcc tatattaaag aggcagttaa aggttcacta aagcgtttag gtatcgatca
     7861 tatcgattta tatcaacttc atggcggaac cattgatgac ccattagacg aaacaataag
     7921 cgcatttgat gaattgaaac aagaaggaat tatacgtgct tacggtattt cttctattcg
     7981 cccaaatgta attgattatt atttaaaaca tagtcaaatc gaaacgataa tgtctcaatt
     8041 caatttgatt gataatcgtc cagaatcatt attagatgca attcacaaca atgatgttaa
     8101 agtattggca agaggacctg tgtctaaagg attattaact tcaaacagtg ttaatgtgct
     8161 cgacaataaa tttaaagatg gtatttttga ttattctcat gatgaattgg gtgaaacaat
     8221 agcctctatt aaagaaattg aaagtaattt atctgcattg acatttagtt atttaacatc
     8281 acatgacgtg cttggttcca tcattgtagg tgcaagtagc gtcgaccaat taaaagaaaa
     8341 tattgaaaac tatcatacta aagttagttt agatcagatt aaaacagcaa gagctcgtgt
     8401 aaaggatttg gaatatacca atcatttagt gtagaagtca ttttcagtaa taaaaacagc
     8461 agcatgaggc gtttcattat aaaaatgcct tactgctgtt gtttatgtac aattcgctat
     8521 aatttatgat tatgattact cacttatgat agaaattaaa gcgttgtcct cacgcatcag
     8581 tatttagtaa tttcgccttg cggcattgcc ttaagcaaac ttctgccact tcatctctta
     8641 ataattttat taaaacatct ttctatattt cacttcgcat gttgattcat cattattagt
     8701 tattatttgt acacccagca catttccttg caacacaagt agtttgaatt tttcacaagt
     8761 ataatataat gtaccgtctg aaatttggtc tacagaaata tcgcctaaaa tatccagcac
     8821 tgtaaattct tcaaatactg atagttgttc cgcatatcgt acacaaagtc ttaccacact
     8881 ctccgattga cagttcattg ccatcccacc tatttatgct ttatttttaa ataatttagg
     8941 gaaacatcgt tcaaaaaatc taggcgcaat ttgatacatt ttcaacgcat gatgcatcca
     9001 tttaggccga ttaatttcca attgttttgt tttaatgcca taaatgatat cttctgcaag
     9061 ctgattagca tcaagcataa tttcccccat ctttttagca tacttcattg atgggtcggc
     9121 tttttgatga aaaggtgtat caatcgggcc aacattaact gtcatgatat gtaagtttgg
     9181 tgactctagt cttaaagcat tcattaatgc ataaaaccct gctttcgatg ccccataatg
     9241 tgcagcattt gcttgtgtgg aaaatgcagc ttgacttgaa atacctacaa tatgtgcgtt
     9301 agatgttaaa tatggtctca acacagtata taaaacatta aaactaatta aattaagctg
     9361 atacgtttca atcatttctg aaaaactatg gtctgaaata gatttgaaat aacctaaacc
     9421 tgcactataa atgaatccat cgaatgatgt attgtcttca aattgcagtg cctgtatcga
     9481 cttcaaatca tttaagtcac aaggaataac atttatagtt ttccccaatt cctgttcaaa
     9541 gattctagtt gctttatcaa catcacgcac caacaacgtt acatgcactt tattttctag
     9601 taactttcgg acaatcgata aacctaaacc actcgtacca ccagtcacta taaaatgttg
     9661 tcctttcatc aattaacctt ccttttcaat tatatagaat gcaatttatc aactttacat
     9721 aattgagaca agttgattat ctttcctaat atatatacaa taataagaaa atataacata
     9781 caaatcaaaa actaaaggga tgtgacgtta atgaaactcg tattttatgg agctggtaat
     9841 atggcacaag ctatatttac aggaattatt aactcaagca acttagatgc caatgatata
     9901 tatttaacaa ataaatctaa tgaacaagct ttaaaagcat tcgctgaaaa actaggtgtt
     9961 aactatagtt atgatgatgc gacattatta aaagatgcag attatgtatt tttaggtacc
    10021 aaaccacatg attttgatgc tctagcaaca cgcatcaaac cacatattac aaaagacaat
    10081 tgcttcattt caattatggc aggtattccg attgattata ttaaacaaca attagaatgc
    10141 caaaatccag ttgctagaat tatgccaaac acaaatgcgc aagttggaca ctctgttact
    10201 ggcattagtt tttcaaacaa ctttgaccct aaatctaaag atgaaattaa cgatttagtt
    10261 aaagcatttg gttctgtaat tgaagtatca gaagatcatt tacatcaagt aacagctatc
    10321 accggaagcg gcccagcatt tttatatcat gtattcgagc aatatgttaa agctggtacg
    10381 aaacttggtc tagaaaaaga acaagttgaa gaatctatac gcaaccttat tataggtaca
    10441 agtaagatga ttgaacgttc agatttgagc atggctcaat taagaaaaaa tattacctct
    10501 aaaggtggta cgacacaagc tggccttgat acattgtcac aatatgattt agtatctatt
    10561 ttcgaagatt gtctaaacgc tgccgtcgac cgtagtattg aactttctaa tatagaagac
    10621 caataaaaac aaacccgcca acacatgtat gcatcatcgc aagcactgtg tttgacgggt
    10681 tatttttata atttattgtt atttggcaag cattgtttat tactttgtca ttagatttta
    10741 aaactatcaa aatcttttac aaaattaaaa ttaggtgtat cttcattttg tatcaatgtt
    10801 tgataaattt catttatatc ttctgtatta tagcgattgc tcaaatgtgt aatcaacgta
    10861 cgtttaacat tggcttcttt tatcaatgca aatacgtctt caatatggct atgatgataa
    10921 ttgttggcta aatgcttttc accatctata taggtcgctt catgtaccat cacatcagca
    10981 tctctagaaa tcacacgttc attagaacat ggttttgtat caccaaaaat tgctacaact
    11041 ggaccctgtt tggactcacc tctaaaatct tttgattgat aaacttgacc attatgttca
    11101 aatgtatcat gagattttac ttcttgatat ttaggacctg gttcaagacc aatgtttttt
    11161 aacgcttcaa cattgattgt acctgtagtt tcaggtgcca ttactctata tccatatgat
    11221 ggaataccat gattaagtaa atgcgcctct acagtaaaac catcatgatg atatgtcaga
    11281 tgatcatcga tttcaatata tgtaattgga tagtttaaat gtgactctga taaattcata
    11341 gacatttcca catatgcttt aattcctttt ggtccaacca atgtaagcgg cttctgttca
    11401 ccgccctgaa aagaacgact agaaagtaat cctggcaaac caaaaatatg atcgccatgc
    11461 atatgagtaa taaatatatg tgtcactttt cctaatttaa ttgcatgatg taaaatttgg
    11521 tgctgtgtac cttcaccaac gtcgaaaagc catatggaat tggaatatgg ttctaaattt
    11581 aaggcgattg cttgtgtatt tctctctttt gtaggcaaac ctgcactcgt tccaaaaaat
    11641 gtaacttcca tatatgcccc tccttttctt caattcattt tatcataaaa tttgtatcaa
    11701 tttagtttta atttatactt gaatcaaaat ctgttaaaaa ttcgtctttg ctagttaatt
    11761 tttctaactt taacgtagac ataactatat aaattttgat aattacgtta tacttatcat
    11821 taataagtat cacattaaac atgatacatg aatcgatatt tcatttaaga cactgcatac
    11881 agtcgagcat attgtatgac ctactgaatg gattatctta taataataaa tcatatatct
    11941 aattaagaat tgaggtttta atcttgagta ctaaaaacaa acacatccca tgtttaatca
    12001 caatctttgg tgcaactggt gacttaagcc atcgtaagtt gtttccatca atattccatc
    12061 tctaccaaca agacaattta gatgaacata ttgccatcat cggtattgga cgtcgtgaca
    12121 ttactaatga tgatttccgt aatcaagtaa aatcatcaat tcaaaagcac gtaaaagata
    12181 caaacaaaat tgacgcgttt atggaacatg tcttctatca tagacatgat gttagtaatg
    12241 aagaaagcta tcaagaatta ctagatttta gtaatgaatt agatagccaa tttgaattaa
    12301 aaggtaatcg actattctat ttagcaatgg caccacaatt ctttggcgtt atttctgatt
    12361 atctaaaatc ttctggtctt actgatacaa aaggatttaa acgccttgtt atcgaaaaac
    12421 cattcggtag tgatttaaaa tcagccgaag cattaaacaa tcaaattcgt aaatcattta
    12481 aagaagaaga aatttatcgt attgaccact atttaggaaa agacatggtt caaaatatcg
    12541 aggtattacg ttttgcgaat gcgatgtttg aaccattatg gaataacaaa tatatttcaa
    12601 acatccaagt tacatcttct gaaatactag gtgttgaaga tcgtggtggt tattatgaat
    12661 caagtggcgc gctaaaagat atggtgcaaa accacatgtt acaaatggtt gcattattag
    12721 ctatggaagc acctattagt ttaaatagtg aagatatccg tgctgagaaa gtaaaagtac
    12781 ttaaatcact gcgtcatttc caatctgaag atgttaaaaa gaactttgtt cgtggtcaat
    12841 atggcgaagg ctatatcgat ggtaaacaag ttaaagcata ccgtgatgaa gatcgcgttg
    12901 cagatgactc taacacacct acctttgttt caggtaaatt aacaattgat aactttagat
    12961 gggctggtgt accattctat attcgtactg gtaaacgtat gaaatctaaa acaattcaag
    13021 ttgtcgttga atttaaagaa gtaccaatga acttatacta tgaaactgat aaactgttag
    13081 attcaaacct attagtaatc aatatccaac ctaatgaagg tgtatcttta catctaaatg
    13141 ctaagaaaaa tacacaaggt atcgaaacag aacctgtcca attgtcttac tcaatgagcg
    13201 ctcaagataa aatgaatact gtagatgcat atgaaaatct attatttgat tgtcttaaag
    13261 gtgatgccac taacttcacg cactgggaag aattaaaatc aacatggaaa tttgttgatg
    13321 caattcaaga tgaatggaat atggttgatc cagaattccc taactatgaa tcaggtacta
    13381 atggtccatt agaaagtgat ttactacttg ctcgtgatgg taaccattgg tgggacgata
    13441 ttcaataatt gaattaaaac gcacatgtta aacaaaaata aatgagcgaa tgacaaggat
    13501 tgattacgaa tcaagtaaat caattgttct atcattcgct ttttttctag actatattat
    13561 gaaattatat tttacaatgc ccaaaactat tttaataatc attgaacaaa tgggtgtata
    13621 atttatagaa ataatgtaga ataaaaataa atgattgaat taattggagt gaaagttttg
    13681 gacgttatca agcaaataca acaggcaatt gtttatattg aagatcgttt attagagcct
    13741 ttcaatttgc aagaattaag tgattacgtt ggtctttcgc cataccatct tgatcaatca
    13801 tttaaaatga ttgtcggctt atctccagaa gcttatgcac gcgcgcgtaa aatgacactc
    13861 gctgcaaatg atgtgattaa tggtgctaca cgacttgtag atatcgctaa aaaatatcac
    13921 tatgcaaatt caaatgattt tgcaaatgat tttagtgatt ttcacggcgt atcacctatt
    13981 caagcctcta ctaaaaaaga tgaattacaa attcaagagc gattatatat caaattatca
    14041 actactgaga gagcacctta tccatacaga ttagaagaga cagatgatat ttcattggtt
    14101 ggatatgcac gatttataga cactaagtat ttgtcacatc cttttaatgt tccggatttt
    14161 ttagaagact tgctcattga tggtaaaatt aaagagttac gacgatataa tgacgttagt
    14221 ccatttgaac tatttgttat tagttgtcct cttgaaaatg gtttagaaat atttgtaggt
    14281 gtaccaagtg aacgttatcc tgcacactta gaaagtcgat ttttacctgg caaacattgt
    14341 gcgaaattca atttacaagg tgaaattgat tatgcaacta atgaagcttg gtactatatt
    14401 gaatcaagtt tgcagttaac attgccatat gaacgaaatg atttatatgt tgaagtgtac
    14461 cctctcgata tttcatttaa tgacccattc actaaaattc agctttggat tcctgttaaa
    14521 cagagtcctt atgacgaaga ttaaataata aaaaacaaag aagcccccta atatatctat
    14581 aggtctacaa atggccttag attctattag ggggcatatt aatatgttaa tttagttcga
    14641 taacacatgc ttcatatgga cgtaactgtt ttaaattaac tttggcatca taattaaata
    14701 gctttacttc tccatggctt aaatcaaatg gtacagttaa ttctgcttcg tggttagtaa
    14761 gattacctac aataagaact tgcttttcat ttaatgttct cgtgtacgca aaaacttgtg
    14821 aattttcagc atctactaaa tcaaattgac catatacgta tacatcatta gactttctta
    14881 attgaattaa atctttataa aattgtaata ctgaatgctc atcttctaat tgttgtgcaa
    14941 cattgatagt tttataattc ggattcactg ggaaccacgg ttcaccattt gtaaatcctc
    15001 catttaacgt atcatcccat tgcattggtg tgcgagaatt atctcggttc tcatctttat
    15061 atttcgcaag taaagcgtct acatctccac cttgagcttt cactatttga tagtcatttt
    15121 taacagcaac atcgttaaac gtttcaatac tttcaaatgg ataattcgtc ataccaattt
    15181 cttgaccttg ataaatgaat ggcgtacctt gttgcaagaa ataaacagct gcatgacttg
    15241 ttgctgattc ataccaatac ttgtcatcgt caccccacgt cgatacacgt cgtggttggt
    15301 cgtgattttc aataaacaac gcattccaac ctttattttc aagttgtttt tgccatctat
    15361 ttaatacaga tttatacgaa tttacatcaa agtgagaatc accactattc cacagtccca
    15421 aatgttcaaa ttggaatatc atattaaatt taccattttc ttccccgacc cagtcatcag
    15481 catcatcagg gcttacacca ttcgcttcac caacagtcat aatgtcatac ttacttaatg
    15541 agcgatcttt catctcttgt aaccaagttt gtatacctgg ctgattcata tctacatcaa
    15601 atgctggggc atatgtttta ccctcaggta caggtaagtc acccgcttca aacgtcttct
    15661 taatatgcgt aattgcatct actctaaatc catcaatgcc tttatcaaac caccagttca
    15721 tcatttcaaa tacagcatct ctaacttccg gattacccca attcaaatca ggttgttttt
    15781 tactgaataa atggaaataa tattgctcag tattagcatc atattcccat gtagatccat
    15841 taaatatact ttcccagttg ttaggttcag agccatctgg ctttggatct tgccaaatgt
    15901 accaatcacg tttgggattg tctttactag atttggattc tataaaccaa ggatgttcat
    15961 cagatgtatg atttacaact aaatctaaaa taagcttcat gcctctatca tgaacacctt
    16021 ttaataaacg atcaaagtct tccatcgttc caaattcatc cataatctct tggtagtcac
    16081 taatatcata accattgtca tcattaggtg atttaaacat tggactgagc caaatgacat
    16141 cgataccgaa atcttttaag tagtccaatt tatcaatcat tccaggtaaa tccccaatac
    16201 catcgtgatt actatcatta aaacttcttg gatatacttg atatgctact gcttctttcc
    16261 accattgctt attcatttta aaactccttt gctatcgctg tgttgatttt cttattttta
    16321 attctgtatc tataatgacg agttcaataa catcctgtgc tttgtttttc aatatattta
    16381 aaattgctgc accagcctgt tgacctaaca ttcgaggctt gatgtcaata caggtttgtg
    16441 gtggtgacgc aatttcggtt aaataagaat cattgaacgt tgctgtcatt acatctttcg
    16501 gaatttcaat attaagttca tataggacac ttaaaatcgc taaatgtaac atagcatcta
    16561 acgaaatgat tgcctgttta atatttgggt ccttcaaacg cgtatgtaga ttttgcatgt
    16621 aattaaaaat aacttctctt tcattactag tctcaataat ttgataatta attttatttt
    16681 gagaagctat cgtttcaaat ccttgaattc tatcttttga aacttcaaaa tttccttttt
    16741 ctgtaataaa tattaattca tctacacctt gttcaataac atgtcgtgtc aaattttcag
    16801 aagctaatat attatcatta tctatatgtg taaattgatg atctatatcc gatgtaggct
    16861 taccaatcac aataaatggc atgctttcat caattaacat ttgtttaatc ggatcatttt
    16921 cttttgaata gagcagtata aacgcatcaa ccattcgttg tttaatcatt ttataaactt
    16981 catccattaa atcattcata ttatttgaga ctgtcgtttg tgtaccatag ccatgctggt
    17041 tacacgtttc agaaattcct agcaatacat tgatgtagaa tggattcagt cgaataggct
    17101 cctcagaccc ttttaacact aaaccaattt tatatgtttg gtttgtaatt aaagttctag
    17161 cagcggtatt aggaaaataa ttcaattctt ccataacttt cttcactttt gaaattgtcg
    17221 cttcgctaat acgttgattt ccttttataa ctcttgaaac tgtcgaagga gaaacaccgg
    17281 cttttagtgc aacatcttta atcgtaacca tttaatcacc tcctgttaat ttctgcattg
    17341 gaaaacgctt ccaaccactg tataatacca gtttagtcac actttctaaa aaagtcaaaa
    17401 gatttgtgca aacgattgca taaaacgata aaaataaaac cttcatactg aaattcaatc
    17461 cgaaaatcaa tataaaggtt tgtataaata ttaaaatcga ttgtttagtc actaactgca
    17521 aaatagttac cttggccatc ttgaaaatta aatacacgtt gaccattcat ttctactata
    17581 tcatgcccag ttaaacctaa atcatttaat tttgagtata atgcatcaaa gtttttctct
    17641 ttaaacatta aagatggtgt tcctaggttc acttccgggc tatgcttttc aataaattct
    17701 tttgccataa tcgtcaatga cgtttcagca tctttggtag gtgatacttc aactgcaaca
    17761 tagtcctcag ctaacggtgt ttcacttaca acaacaaatt ctaaagtttc tgtccaaaat
    17821 gctttcgctt tttcgacatc atcaacatat aacataactt gatttaactt ttccataaaa
    17881 tagtacctct atttctctat agtacatgct atcataacac agtaaatatt ttattacttc
    17941 acaaaatgct taaaaatatg gcgggatgct tttaaggtca aggataatac ttgtgtaatt
    18001 ttttataggt tgtagctact ctatcacact ctcttttata tttatcaaaa gatataaaaa
    18061 aggatagtat ctttcaacta tcctttaatc aatattattc ttcaatccat tgtgtatgga
    18121 atacgccttc tttatctttt ctttcgtacg tatgagcacc gaagtagtca cgttgtgctt
    18181 gaattaagtt tgcaggtaaa tcagcagcac ggtaactatc atagtaatta atacttgatg
    18241 agaaaccagg tgttggtaca ccattttgaa caccagttgc gacaacatca cgtaacgcat
    18301 cttgatattc agtaacgatg tttttaaagt aaggatctag caataagttt tgtaatcctg
    18361 gattattatc gtaagcatct ttgatctttt gtaagaattg tgcacggata atgcaacctt
    18421 ctctccaaat catagctaaa tcaccaagtt ttaaattcca ttcattatct tcacttgctt
    18481 tacgcatttg cgcgaaacct tgtgcataag aacaaatttt actcatatat aatgctttac
    18541 gaattttttc taaaaagtct ttcttgtcac catcaaatga tgcttttgga ccatttaatt
    18601 ctttagaagc atttacgcgc tcttctttga ttgaagagat aaaacgtgca aatacagatt
    18661 cagtaatgat tgttaatgga atacctaatt ctaatgcgtt aattgaagtc cattttcctg
    18721 tacctttttg acctgcagta tcaagaattt tttcaactaa tgcttcttta ttttcatcta
    18781 atttcatgaa aatatcacca gtgatttcaa ttaaataact ttctaattca ccagcattcc
    18841 agtctttgaa cgtttgagca atgtcttcat gagacatgcc taataattct ttcatcatag
    18901 cataactttc tgcaattaat tgcatgtcag catattcgat accattgtgt accattttca
    18961 catagtgtcc agcaccatta ggtccaatat aagtaacaca tgaagcaccg tcttttgcct
    19021 ttgcagcaat tgcatcaaga atatctgcaa ctttgttata agcttcttct tgtccacccg
    19081 gcattaatga cggaccagtt aacgctccaa tttcaccacc agaaacgccc ataccaataa
    19141 agttgattgc actttgtgct aatgctttat tacgtctgat agtatcttga tagtttgtat
    19201 taccaccatc aattaaaata tctccatcat ctaataaagg taacaaacta tcaatcgttg
    19261 cgtccgtagc tttacctgct tgaaccatta ataaaatttt acgtggtttt tctaaagaat
    19321 taacaaattc ttccaatgaa tacgttggat gaatattttt cccttttgat tcttcaacca
    19381 ttaaatcagt tttttcactt gagcggttaa atacagatac actatatccg cgtgattcaa
    19441 tattccaagc taggttttta cccataacgg ctaaaccaat aactccaatt tgttgtgtca
    19501 tattacttac ctcacttgtt gatttttcat tagtattgta tcacaaaata gacatacact
    19561 acactaaatc atttcgaatg tcgcgcaact attttgatta tttctaacac ttgacttgca
    19621 agcaagttca atgatttaat cggcattctc tcatttgttg tatggatttt ttcataaccc
    19681 actcctaaaa tgactgaagg aataccaaat gtattaataa tactgccgtc tgaaccgcca
    19741 ccagaaataa ttgtatttgc agataatcct aaattacgag cactttcttg tgcaatttta
    19801 acaaccgctt cattatcatt aattttaaat cctggataac tttgctccac tgtaactact
    19861 gctttcccac ctaattctga tgcagtagtt tcaaacacat cagtcatatg tttgacttgt
    19921 gtttttattc tttctggatc gtgagaacgt gcctctgctt ctaaaatgac ttcatctgca
    19981 acaatattcg tagctgaacc gccatgaaac ttaccaatat tggcagtagt tatttcatca
    20041 acttgtccta atttcattcg actaattgct ttcgccgcaa tattaatagc actaacaccc
    20101 tcttttggcg tacttgcatg agccgttttg ccaaaaattt tagctgaaat taacatttgc
    20161 gtcggtgcac ctacaaccgt agtaccgaca tcagcacttg catcaatagc ataaccaaag
    20221 tccgcgtcca acaactctga atttaattct ttagcaccaa ttaaacctga ttcttctcca
    20281 acagtaatca caaattgaat ttgtccatgt gggatttgtt gttcctttat cacttgcaaa
    20341 acttcaagca tcgctgctaa tcctgcttta tcatctgcac ctagaatagt cgtaccatca
    20401 gagtatatgt agccgtcatc ttttacaatt ggctttacat taattgcggg tacaacagta
    20461 tccatatggc tcgtcaaata taatttaggt acttcgcctt cttcgatagt actattcatt
    20521 gtacacacta gattattggc acctaattta ggatgtttag ccgcttcatc ttctttaaca
    20581 tctaacccta atgctatgaa tttttctttt aaaataggtt ggattgttga ttcattccct
    20641 gtctcagaat cgatttgtac aagttcaaaa aacgtattaa gtaatctttg ctcattaatc
    20701 ataatggaac cccttttatc aaaattttca tgtacgccaa acggtaaaaa ttgatgaaat
    20761 aaaat
//
LOCUS       DAMQWL010000040        20587 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.040, whole genome shotgun sequence.
ACCESSION   DAMQWL010000040 DAMQWL010000000
VERSION     DAMQWL010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 20587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20587
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.040"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            19..1002
                     /locus_tag="PF788_001302"
     CDS             19..1002
                     /locus_tag="PF788_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HDG6303567.1"
                     /translation="MDKETNDNEYRRQSEHRTSAPKRKKKKKIRKLPIILLIVVILLI
                     ALVVYIVHSYNSGVEYAKKHAKDVKVHQFNGPVKNDGKISILVLGADKAQGGQSRTDS
                     IMVVQYDFINKKMKMMSVMRDIYADIPGYGKHKINSAYALGGPELLRKTLDKNLGINP
                     EYYAVVDFTGFEKMIDELMPEGVPINVEKDMSKNIGVSLKKGNHRLNGKELLGYARFR
                     HDPEGDFGRVRRQQQVMQTLKKEMVNFRTVVKLPKVAGILRGYVNTNIPDSGIFQTGL
                     SFGIRGEKDVKSLTVPIKNSYEDVNTNTDGSALQINKNTNKQAIKDFLDED"
     gene            complement(1090..1275)
                     /locus_tag="PF788_001303"
     CDS             complement(1090..1275)
                     /locus_tag="PF788_001303"
                     /EC_number="5.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HDG6303568.1"
                     /translation="MPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIE
                     EMKPNHYGVAGVRKSDQ"
     gene            1423..2685
                     /locus_tag="PF788_001304"
     CDS             1423..2685
                     /locus_tag="PF788_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HDG6303569.1"
                     /translation="MYNYHLLEDRDVLCIDQKSFFASVSCIEKGLDPLETKLAVVADT
                     KRQGSVILAATPKLKELGIKTGSRLFEIPHRNDIYIINPSMRKYLNVSVAISKIALRY
                     IPPEDLHQYSIDEFFMDVTDSYHRFSSTVHAFCERLKREIYEETGIYCTVGIGSNMLL
                     SKIAMDVEAKHSQNGIAEWRYQDVPTKLWPIQPLRDFWGINRRTEAKLNKRGIFTIGD
                     LAKYPYKFLKKEFGILGVDMHLHANGIDQSKVREKHKISNPSICKSQILMRDYHFDEA
                     KVVMQELIEDVASRVRARKKVARTIHFAFGYSDEGGVHKQYTLKDPTNLEKDIYKVVM
                     HFADKLCNKQALYRTLSISLSQFINEDERQLSLFEDEYQRKRDECLAKTIDQLHLKYG
                     KGIVSKAVSFTEAGTKHGRLGLMAGHKM"
     gene            complement(2822..3913)
                     /locus_tag="PF788_001305"
     CDS             complement(2822..3913)
                     /locus_tag="PF788_001305"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HDG6303570.1"
                     /translation="MTTVLFVGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKS
                     IGIINEKCLNYSEAIKKADVIIYATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMI
                     QQHECNLLKHNIHLVSGHPMAGSHKSGVLNAKKHLFENAYYILVYNEPRNEQAANTLK
                     ELLSPTLAKFIVTTAEEHDYVTSVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGF
                     RDITRIASSNAQMWKDITLSNKTYILEMIRQLKSQFQDLERLIESNDSEKLLSFFAQA
                     KSYRDALPAKQLGGLNTAYDLYVDIPDESGMISKVTYILSLHNISISNLRILEVREDI
                     YGALKISFKNPTDRERGMQALSDFDCYIQ"
     gene            4078..5109
                     /locus_tag="PF788_001306"
     CDS             4078..5109
                     /locus_tag="PF788_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HDG6303571.1"
                     /translation="MEPILEMIKTLTGINSPSGDTEEAIQFVEKYAKDLGYQTTLTNK
                     GALLITVPGKNDEVQRCITAHVDTLGAMVKEIKEDGRLAIELIGGFTYNAIEGEYCQI
                     KTDAGQIYTGTICLHETSVHVYRNNHEIPRDQKHMEIRIDEVTTSEEDTKSLGISVGN
                     FVSFDPRTVITSSGFIKSRHLDDKASVAMILQLLKKLKEEQIILPHTTQFYISNNEEI
                     GYGANASIDSKIKEYIALDMGALGDGQASDEYTVSICAKDASGPYHKQLKSHLVNLCK
                     INNIPYKVDIYPYYGSDASAALHAGADIRHGLFGAGIESSHAMERTHIDSIKATEKLL
                     YAYCLSPIE"
     gene            5601..7007
                     /locus_tag="PF788_001307"
     CDS             5601..7007
                     /locus_tag="PF788_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDG6303572.1"
                     /translation="MDIFYKKIKANVTPEVLAQLHSKKIILESTNQQQTKGRYSVVIF
                     DIYGTLTLDNDVLSVSTLKESYQITERPYHYLTTKINEDYHNIQDEQLKSLPFISGYV
                     GTCSFDLVRHEFPKLQSIQLEDHKQHDVRLYMVEQVYVFDHYKDELYIIATNQFSNST
                     KSDLENRVIKSIEDLTKIQPFMPTQDFDFKTKEIQSNISEERFIEMIQYFKEKITEGD
                     MFQVVPSRIYKYAHHASQHLNQLSFQLYQNLKRQNPSPYMYYLNIDQPYIVGSSPESF
                     VSVKDQIVTTNPIAGTIQRGETTQIDNENMKQLLNDPKECSEHRMLVDLGRNDIHRVS
                     KIGTSKITELMVIEKYEHVMHIVSEVTGKINQNLSPMTVIANLLPTGTVSGAPKLRAI
                     ERIYEQYPHKRGVYSGGVGYINCNHNLDFALAIRTMMIDEQYINVEAGCGVVYDSIPE
                     KELNETKLKAKSLLEVSP"
     gene            7004..7570
                     /locus_tag="PF788_001308"
     CDS             7004..7570
                     /locus_tag="PF788_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDG6303573.1"
                     /translation="MILVVDNYDSFTYNLVDIVAQHTDVIVQYPDDDNVLNQSVDAVI
                     ISPGPGHPLDDQQLMKIISTYQHKPILGICLGAQALTCYYGGEVIKGDKVMHGKVDTL
                     KVISHHQHLLYQDIPEQFSIMRYHSLISNPDNFPEELKITGRTKDCIQSFEHKERPHY
                     GIQYHPESFATDYGVKIITNFINLVKEG"
     gene            7576..8574
                     /gene="trpD"
                     /locus_tag="PF788_001309"
     CDS             7576..8574
                     /gene="trpD"
                     /locus_tag="PF788_001309"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDG6303574.1"
                     /translation="MTLLTRIKTETILLESDIKELIDILISPSIGTDIKYELLSSYSE
                     REIQQQELTYIVRSLINTMYPHQPCYEGAMCVCGTGGDKSNSFNISTTVAFVVASAGV
                     KVIKHGNKSITSNSGSTDLLNQMNIQTTTVDDTPNQLNEKDLVFIGATESYPIMKYMQ
                     PVRKMIGKPTILNLVGPLINPYHLTYQMVGVFDPTKLKLVAKTIKDLGRKRAIVLHGA
                     NGMDEATLSGDNLIYELTEDGEIKNYTLNATDYGLKHAPNSDFKGGSPEENLAISLNI
                     LNGKDQSSRRDVVLLNAGLSLYVAEKVDTIAEGIELATTLIDNGEALEKYHQMRGE"
     gene            8576..9358
                     /gene="trpC"
                     /locus_tag="PF788_001310"
     CDS             8576..9358
                     /gene="trpC"
                     /locus_tag="PF788_001310"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HDG6303575.1"
                     /translation="MTILSEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEK
                     EPKLAIIAEIKSKSPTVNDLPERDLSQQISDYDQYGANAVSILTDEKYFGGSFERLQA
                     LTTKTTLPVLCKDFIIDPLQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEV
                     LVEVHDRHELERAYKVNAKLIGVNNRDLKRFVTNVEHTNTILENKKTNHYYISESGIH
                     DASDVRKILHSGIDGLLIGEALMRCDNLSEFLPQLKMQKVKS"
     gene            9358..9990
                     /locus_tag="PF788_001311"
     CDS             9358..9990
                     /locus_tag="PF788_001311"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HDG6303576.1"
                     /translation="MKLKFCGFTSIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKK
                     LASAVPNHIDKVCVMVNPDLTTIEHVLSNTSINTIQLHGTESIDFIQEIKKKYSSIKI
                     TKALAADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILKHIKDIPYLIAGG
                     INSENIQTVNQLKLSHQGYDLASGIEVNGRKDIEKMTAIVNIVKGDRDNE"
     gene            9983..11197
                     /gene="trpB"
                     /locus_tag="PF788_001312"
     CDS             9983..11197
                     /gene="trpB"
                     /locus_tag="PF788_001312"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDG6303577.1"
                     /translation="MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKAD
                     PEFQRELEYYLSEYVGRATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQA
                     LLAKRMGKKKLVAETGAGQHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLG
                     AKVVAVEDGQGTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKE
                     IKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALA
                     IGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENAS
                     DTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETI
                     RQYMVERGLAND"
     gene            11190..11918
                     /locus_tag="PF788_001313"
     CDS             11190..11918
                     /locus_tag="PF788_001313"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDG6303578.1"
                     /translation="MTKLFIPYIMGNKDLIENATLLSENGADIIEIGVPFSDPVADGP
                     VIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDT
                     GVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTM
                     NATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSEIV
                     KRFKSNTREEIIKYLQSIQQTLNN"
     gene            12240..13502
                     /gene="femA"
                     /locus_tag="PF788_001314"
     CDS             12240..13502
                     /gene="femA"
                     /locus_tag="PF788_001314"
                     /EC_number="2.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine glycyltransferase FemA"
                     /protein_id="HDG6303579.1"
                     /translation="MKFTNLTAKEFGAFTDSMPYSHFTQTVGHYELKLAEGYETHLVG
                     IKNNNNEVIAACLLTAVPVMKVFKYFYSNRGPVIDYENQELVHFFFNELSKYVKKHRC
                     LYLHIDPYLPYQYLNHDGEITGNAGNDWFFDKMSNLGFEHTGFHKGFDPVLQIRYHSV
                     LDLKDKTADDIIKNMDGLRKRNTKKVKKNGVKVRFLSEEELPIFRSFMEDTSESKAFA
                     DRDDKFYYNRLKYYKDRVLVPLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPEN
                     KKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN
                     AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFTEDAEDAGVVKFKKGYNAEIIE
                     YVGDFIKPINKPVYAAYTALKKVKDRIF"
     gene            13521..14780
                     /gene="femB"
                     /locus_tag="PF788_001315"
     CDS             13521..14780
                     /gene="femB"
                     /locus_tag="PF788_001315"
                     /EC_number="2.3.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine glycyltransferase FemB"
                     /protein_id="HDG6303580.1"
                     /translation="MKFTELTVTEFDNFVQNPSLESHYFQVKENIVTRENDGFEVVLL
                     GIKDDNNKVIAASLFSKIPTMGSYVYYSNRGPVMDFSDLGLVDYYLKELDKYLQQHQC
                     LYVKLDPYWLYHLYDKDIVPFEGREKNDALVNLFKSHGYEHHGFTTEYDTSSQVRWMG
                     VLNLEGKTPETLKKTFDSQRKRNINKAINYGVKVRFLERDEFNLFLDLYRETEERAGF
                     VSKTDDYFYNFIDTYGDKVLVPLAYIDLDEYVLKLQQELNDKENRRDQMMAKENKSDK
                     QMKKIAELDKQIDHDQHELLNASELSKTDGPILNLASGVYFANAYEVNYFSGGSSEKY
                     NQFMGPYMMHWFMINYCFDNGYDRYNFYGLSGDFTENSEDYGVYRFKRGFNVQIEELI
                     GDFYKPIHKVKYWLFTTLDKLRKKLKK"
     gene            15469..16236
                     /locus_tag="PF788_001316"
     CDS             15469..16236
                     /locus_tag="PF788_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDG6303581.1"
                     /translation="MRFVFDIDGTLCFDGRLIDQTIIDTLLQLQHDGHELIFASARPI
                     RDLLPVLPSVFHQHTLIGANGAMISQQSKISVIKPIHTDTYHHIFKIIQKYELDYIID
                     DDWNYAAQLDAENAIFERLDPHKLASCIDVANIDTPIKIILLNIDPAQITTILDELDK
                     YHQELEMIHHSNEYNIDITAQNINKYTALQYIFDADVKYIAFGNDHNDIVMLQHASSG
                     YIIGPSEAYTHAILKLDKIKHINNNAQAICKVLKSYK"
     gene            complement(16284..16757)
                     /locus_tag="PF788_001317"
     CDS             complement(16284..16757)
                     /locus_tag="PF788_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HDG6303582.1"
                     /translation="MGLLDIASIRSIERGFNYYQSECVINLKSFSETQHEAEVKGSGN
                     KVYRCYIDMEHPRKSICNCPHADGRRVICKHMIALLFTASPEAANKHIMMLNEVEEDY
                     QLRRNMWIDSLKEMINDMSEEELRDAYLNMLIEHGEMAELFGLDEEEEMFEDEFY"
     gene            complement(16881..17582)
                     /locus_tag="PF788_001318"
     CDS             complement(16881..17582)
                     /locus_tag="PF788_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303583.1"
                     /translation="MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTL
                     ASLVLGLFKPVKGEIYLSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTA
                     QDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDV
                     IAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNV
                     DRHPYTKELVQAFSY"
     gene            complement(17575..18348)
                     /locus_tag="PF788_001319"
     CDS             complement(17575..18348)
                     /locus_tag="PF788_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303584.1"
                     /translation="MSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKS
                     LIAKALLEYLPFDLSCTYDSYQFDGENVSRLSQYYGHTIGYISQNYAESFNDHTKLGK
                     QLTAIYRKHYKGSKEEALSKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLM
                     LEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVL
                     KEGQIIERGNINHFKYEHLHPYTERLIKYRTQLKRDYYD"
     gene            complement(18335..19165)
                     /locus_tag="PF788_001320"
     CDS             complement(18335..19165)
                     /locus_tag="PF788_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303585.1"
                     /translation="MHKIFSKNNLIFFVFVAFIFVVIVLQFFVSSENATKVNLSQTFE
                     PISWLHLLGTDDYGRDLFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIE
                     RLVLRFIDVGLSIPEFIIMIALASFFQPSLWNLVISITLIKWMNYTRLTRSIVNSEMN
                     KPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPP
                     TPEWGAMLQQGRDFISSHPIMLIAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
                     "
     gene            complement(19158..20144)
                     /locus_tag="PF788_001321"
     CDS             complement(19158..20144)
                     /locus_tag="PF788_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303586.1"
                     /translation="MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLD
                     VAQVSTEQINATKDKLGLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPI
                     TLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIV
                     TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERY
                     ILIHDLLKPTILPIIPLLGISLGSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQ
                     GCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKIKTNTPLISESSDRHA"
     gene            complement(20315..20500)
                     /locus_tag="PF788_001322"
     CDS             complement(20315..20500)
                     /locus_tag="PF788_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303587.1"
                     /translation="MKNTAMRALNFAVKIKNNIRQLYAQNHRLLSYTAVTIISKEMEY
                     SAIVVFVLTFLYFTWLT"
BASE COUNT         7443 a         3109 c         3547 g         6488 t
ORIGIN      
        1 gatataaggt aggtaaatat ggataaagaa actaatgaca acgaatatag acgtcaaagt
       61 gaacatcgca cttcggcgcc taagcgaaaa aagaagaaga aaattaggaa attacctatc
      121 attcttctga ttgttgtaat tttacttatc gcattagttg tatatattgt acatagttac
      181 aatagcggtg tagaatatgc caagaaacat gcgaaagatg ttaaagtaca tcaatttaat
      241 ggaccagtaa aaaatgatgg taaaatttct attcttgtac tcggtgcaga taaagcacaa
      301 ggtggacaat caagaacaga ttctatcatg gttgttcaat atgactttat caataaaaag
      361 atgaaaatga tgtctgtcat gcgtgatatt tatgcagata ttccaggata tggaaaacac
      421 aaaattaatt cagcatacgc tttaggtggt ccagagctac ttagaaaaac acttgataaa
      481 aatttaggaa ttaatcctga atattatgca gtagttgatt ttactggatt tgagaaaatg
      541 attgatgaat taatgcctga aggtgtacca attaatgtcg aaaaagatat gtcgaaaaat
      601 attggtgtat ctttgaaaaa gggtaaccat aggttgaatg gtaaagaatt acttggttat
      661 gcaagattcc gtcacgaccc tgaaggtgac ttcggacgcg tgcgacgtca gcaacaagtg
      721 atgcaaacat tgaaaaaaga aatggttaat tttagaacag ttgttaaatt accaaaagtt
      781 gcaggtattt taagaggcta tgtgaataca aacattcctg attcagggat tttccaaaca
      841 ggtttgagtt ttggtatccg aggtgaaaaa gatgttaagt cattgactgt gccaatcaag
      901 aactcatacg aagatgtcaa tacaaatact gatggtagtg cattacagat taataaaaac
      961 acaaataaac aagctattaa agacttttta gatgaagatt aaaaataaac aaggcgattt
     1021 ctatcatact cagatagaag tcgccttgtt cgttttcaaa gaattaattg gcatgcatct
     1081 tatgaagaat tattgatctg actttcttac gccagccaca ccataatggt ttggtttcat
     1141 ttcttctata acaacgtgaa ttgcttgtct atttgccccc gttgtttttt ctacggcgtc
     1201 agttacttcg ctaactaaat tttttaattg ttcatccgaa cgaccttcta ataattttac
     1261 attgacgatt ggcatcatcc aaacctccta atcattatta atttgagtat atcatgtaat
     1321 acttaaaaat tcatttgcaa aataacagaa catttgttct aaaatagttg aaatagaaca
     1381 cgtgttcgta tataataaga ttcaagtaag ggaggaataa cagtgtataa ttatcattta
     1441 ttagaagata gggatgttct atgtattgac caaaaaagtt tttttgcgag tgtttcttgt
     1501 attgaaaagg ggctagatcc attagaaaca aagctagctg ttgttgcaga tactaagcgt
     1561 cagggttctg taatattggc tgcgacacct aaattaaaag aattaggcat caagacaggg
     1621 tcgcgattgt ttgaaatacc acatagaaat gatatttaca ttatcaatcc aagtatgcgt
     1681 aaatatctta atgtttcagt tgctatttct aagattgcat tgcgttatat tccacctgaa
     1741 gatttacacc aatatagtat tgacgaattt tttatggatg ttactgatag ctatcataga
     1801 tttagttcta cagtacatgc attttgcgaa agacttaaac gtgaaattta tgaagaaaca
     1861 ggcatttatt gtactgtggg cattggttct aatatgttat taagtaaaat tgctatggat
     1921 gttgaagcga agcatagtca aaatggtata gctgaatggc gatatcaaga tgtaccaacg
     1981 aaattatggc caattcagcc cttgcgagat ttttggggta ttaatcgtcg aacagaagcc
     2041 aaattgaata aaagaggaat ttttactata ggagatttag cgaaatatcc atataaattt
     2101 ttaaaaaaag agttcggtat tttaggtgtt gatatgcatc tacatgcgaa tgggatagat
     2161 cagagtaaag tacgtgaaaa gcacaagatc agcaatccat cgatatgcaa aagtcaaata
     2221 ttaatgagag attatcattt tgatgaagca aaagtagtaa tgcaagagtt aattgaagat
     2281 gttgctagca gagttcgagc aagaaaaaaa gtggcaagaa cgatacattt tgcctttggc
     2341 tatagtgatg aaggcggtgt acataagcaa tatactttga aagatccaac aaacttagaa
     2401 aaagatattt ataaagtagt aatgcatttc gcagataaat tatgtaataa acaagcacta
     2461 tatcgtacgc taagtatatc tttgagtcaa tttattaatg aggatgagcg acagttaagt
     2521 ctgtttgaag atgaatacca acgcaaacgt gacgaatgtc tagctaaaac gatagaccaa
     2581 ttacatttga aatacggcaa aggtattgtg tccaaagcag tatcgtttac agaagcaggt
     2641 acaaaacacg gcagattagg tttaatggct ggacataaaa tgtaatgact atacggttta
     2701 agtaatatat aactgtgatt cgtataaaat aagtctctaa agataaatat ttcatatatc
     2761 acaatagatt ttcacaataa tatctaagaa tacatggaat ttatcaaaag agacttaata
     2821 attattggat ataacaatca aaatcactca atgcttgcat accgcgttct cggtcagtag
     2881 ggtttttgaa actaattttt aaagcaccgt atatatcttc gcgtacttct aagattctta
     2941 agttgcttat agatatgtta tgtaaactca ggatataagt cactttactt atcatacctg
     3001 attcatccgg aatgtctaca tatagatcat acgcagtatt tagtccacct agttgtttag
     3061 cgggtagtgc gtcgcgatac gatttagctt gggcaaaaaa tgataacaat ttttcagaat
     3121 cattgctttc aattagtctt tctaaatctt gaaactgact ttttagctgt cgaatcattt
     3181 ctaaaatata cgttttatta ctcaaggtga tatctttcca catttgtgca ttactactag
     3241 ctatacgagt gatatcacga aaaccaccag ctgcaagttt attaactaaa tgatgttctt
     3301 gaccgttctt ttgactaaca tgaactaaac tagatgcaac gatatgaggt aaatgactta
     3361 cgacgcttgt tacgtagtcg tgttcttcag cagtagttac aataaattta gcaagagtag
     3421 gtgataacag ttcttttaac gtgtttgctg cttgctcatt tcttggctca ttgtagacta
     3481 aaatataata agcgttttca aataagtgct ttttagcatt tagtacacca gatttatgac
     3541 taccagccat tggatgacca ctgactaaat gaatattatg ctttaataaa ttgcattcgt
     3601 gttgctgtat cattgcttta gtactaccag tatcagaaac aataacacca ggtttagttg
     3661 gcatatctat aagctcgcta agatatttat ttgtgatagc aacaggtgtt gcataaataa
     3721 ttacatcggc ttttttaata gcttcactat aatttaaaca tttttcatta ataatgccga
     3781 ttgatttagc tttatctaac tgagaagtat ctgcatcgta tgcaataata ttagtattag
     3841 ggttatggta ttttatattg ctagcaagac ttccaccaat taatccaagc ccaacaaata
     3901 aaactgttgt catataaatc accttatttc gaaattttca gaataataac attgtaaatg
     3961 agctgttgac acagtgcaat agtaaataaa aatcgataat agcattaata gataaacgga
     4021 gataaatcat ctacaataaa gagtatagta acacaatggc aacggagggg taaatcaatg
     4081 gaaccaatat tagaaatgat taaaacatta acaggtatta atagtccttc aggagacaca
     4141 gaagaagcaa ttcaatttgt cgaaaaatat gcaaaagact tgggttatca aacaacacta
     4201 acaaataaag gtgcgttatt aataacagtg ccaggcaaaa atgatgaagt acaacgctgt
     4261 attactgctc atgttgatac tttaggtgca atggttaaag aaattaaaga agatggtcgc
     4321 ttagcaatag aattaattgg aggattcacg tataacgcga ttgagggtga atattgccaa
     4381 attaaaactg atgctggtca aatatataca ggaacaattt gtctgcatga aacaagtgtt
     4441 catgtatata gaaataatca tgaaatacct agagatcaaa agcatatgga aataagaatt
     4501 gatgaagtaa ctacatcaga agaagataca aagagtttag gtatttcagt aggtaatttt
     4561 gttagctttg atccacgtac agttatcacg tcatcaggtt ttattaaatc tcgtcattta
     4621 gatgataaag ctagcgtagc gatgatacta caattactaa agaaattaaa agaagagcaa
     4681 ataatattac cacatacaac gcaattttat atttctaata acgaagaaat aggttacggt
     4741 gcaaatgcat caattgattc gaaaatcaaa gaatatattg cattagatat gggcgcgttg
     4801 ggagacggtc aagcatcgga tgaatataca gtttctattt gtgccaaaga tgcttcaggt
     4861 ccatatcata agcaattgaa atcgcaccta gttaatcttt gcaaaataaa taacattcca
     4921 tataaagtag acatatatcc atattatggt tcagatgctt cagcagcttt acatgctggt
     4981 gcggatatca gacatggttt atttggcgct ggcattgaat catctcatgc aatggaacga
     5041 acacatattg attctattaa agcgacagag aaattactat atgcatattg cttatcacca
     5101 attgagtaaa caattagtgt tgacaaatgt gaacgaccta tgtaatataa tgaactataa
     5161 aaataattag aattttctaa agaaatagta gcagatatga aacgtagcaa atagaaagct
     5221 aatgggtgat gggaattagc acgccatatc ttgtgaattg gactttggaa aacaattgaa
     5281 tgagttttga aagtgaacat gaattatgtt aactaaggtg gcaccacggt aacgcgtcct
     5341 tacaggtata tgcgttatgt ggtgtctttt tatttagaca aaatgtagta gttaattaaa
     5401 ggtagcaaca gaaagttagt ggatgatgtg aactaacacc gagattaatg aaattgggtt
     5461 ttgtctgcaa cagaaaaatt atatatagta aagagtgaac tatgaatatt tcgaatattc
     5521 ggttaattta ggtggtacca cgcgtcagcg tcctttatat tgataaggat gctggcgctt
     5581 ttttgaaagg agcgtataga atggatatat tttataaaaa aataaaagca aatgtaacgc
     5641 ccgaagtttt agcacaactt cattccaaga agatcatttt ggaaagtaca aatcaacaac
     5701 aaactaaagg tcgctattca gttgttattt ttgatattta tggcacttta actttagata
     5761 atgatgtatt atcagtaagt actttaaaag aatcgtatca aatcactgaa agaccgtacc
     5821 attatttaac gactaaaata aatgaagact accataatat tcaagatgag caacttaagt
     5881 cattaccatt tatatctgga tatgttggga cgtgtagctt tgatttagta agacatgaat
     5941 ttcctaaatt gcaatcaata caattagaag atcacaagca gcacgatgta aggttatata
     6001 tggttgaaca agtttatgta tttgaccatt acaaagatga gttatatatc atcgcgacga
     6061 atcaattttc aaattcaaca aaatcagatc ttgagaatcg agttattaag tctatcgaag
     6121 acttaactaa aatccaacca ttcatgccta cacaagattt tgattttaaa actaaagaaa
     6181 ttcaatcaaa catttctgaa gaaagattta tcgaaatgat tcagtatttc aaagagaaaa
     6241 taacagaagg ggatatgttc caagttgtgc catcaagaat ttacaaatat gcgcatcatg
     6301 ctagtcagca tttaaatcaa ctttcgtttc aactgtatca aaatttaaaa cgacaaaacc
     6361 caagtccata tatgtattat cttaatatcg atcaaccata tattgtcggt agttctcccg
     6421 aaagtttcgt aagtgtcaaa gatcaaattg taacaactaa tcctattgca ggtacgattc
     6481 aacgtggtga gacgacacaa atagataatg agaatatgaa acaactactt aatgatccaa
     6541 aagaatgcag cgaacatcgt atgctagttg atttaggacg taatgatatt catagagtaa
     6601 gtaaaatcgg tacctcaaaa attactgaat taatggttat tgaaaaatat gaacatgtta
     6661 tgcatatcgt aagtgaagtc acaggtaaaa taaatcaaaa tttatcgcca atgacagtta
     6721 ttgcgaattt attaccaaca ggtaccgttt caggtgcacc aaaattacgt gcaattgaaa
     6781 gaatatatga acaatatcca cataaacggg gcgtttatag tggtggtgtt ggatacataa
     6841 attgtaatca taacttagat tttgcattag caattcgaac gatgatgata gatgagcagt
     6901 atatcaacgt agaagctggt tgtggcgttg tatatgattc tattcctgaa aaagaactga
     6961 atgaaacgaa attgaaagct aaaagcttat tggaggtgag cccatgatct tagttgtaga
     7021 taattatgat tcctttacat ataacctagt ggatattgtt gctcaacata ctgacgtcat
     7081 tgttcaatac cctgatgatg ataatgtgct gaatcaatcg gtggacgctg ttattatatc
     7141 tcctggtcca gggcatccat tagacgatca acagttaatg aaaatcatat caacctatca
     7201 acacaaaccc attttaggta tttgtttagg ggctcaggca ctgacttgtt actacggtgg
     7261 agaagtcatt aaaggcgaca aggttatgca cggcaaagtt gatacactaa aggttatatc
     7321 gcatcatcaa catctgttat atcaagatat accagaacag ttttcaatta tgagatatca
     7381 ttcattaata agtaaccctg acaattttcc agaagaattg aaaattactg gacgtaccaa
     7441 agattgtata cagtcattcg agcataaaga aagaccgcat tatggtattc agtaccatcc
     7501 tgaatcattt gctacagact atggtgtcaa aataattaca aatttcatta atctagtgaa
     7561 ggaaggatga aaaccatgac attactaaca agaataaaaa ctgaaactat attacttgaa
     7621 agcgacatta aagagctaat cgatatactt atttctccta gtattggaac tgatattaaa
     7681 tatgaattac ttagttccta ttcggagcga gaaatccaac aacaagaatt aacatatatt
     7741 gtacgtagct taattaatac aatgtatcca catcaaccat gttatgaagg ggctatgtgt
     7801 gtgtgcggca caggtggtga caagtcaaat agtttcaaca tttcaacgac tgttgctttt
     7861 gttgtagcaa gtgctggcgt aaaagttata aaacatggta ataaaagtat tacctcaaat
     7921 tcaggtagta cggatttgtt aaatcaaatg aacatacaaa caacaactgt tgatgataca
     7981 cctaaccaat taaatgaaaa agaccttgta ttcattggtg caactgaatc atatccaatc
     8041 atgaagtata tgcaaccagt tagaaaaatg attggaaagc ctacaatatt aaaccttgtg
     8101 ggtccattaa ttaatccata tcacttaacg tatcaaatgg taggcgtctt tgatcctaca
     8161 aagttaaagt tagttgctaa aacgattaaa gatttaggta gaaaacgtgc aatcgtttta
     8221 catggtgcaa atggtatgga tgaagcaaca ctatctggtg ataatttgat atatgaattg
     8281 actgaagatg gagaaatcaa aaattacaca ttaaatgcga ctgattatgg tttgaaacat
     8341 gcgccgaata gtgattttaa aggcggttca cctgaagaaa atttagcaat ctcccttaat
     8401 atcttgaatg gtaaagatca gtcaagtcga cgtgatgttg tcttactaaa tgcgggttta
     8461 agcctttatg ttgcagagaa agtggatacc atcgcagaag gcatagaact tgcaactaca
     8521 ttgattgata atggtgaagc attggaaaaa taccatcaaa tgagaggtga ataatatgac
     8581 gattttatca gaaattgtta aatataaaca gtcactttta caaaatggct attatcaaga
     8641 caaacttaat accttgaaaa gtgtgaagat tcagaataaa aaatctttta taaacgcaat
     8701 tgagaaagaa ccaaagctag caattattgc agaaattaaa tcgaagagtc ctacagttaa
     8761 tgacttacct gaacgagatt tatcgcaaca aatctcagat tatgaccaat atggtgcaaa
     8821 tgccgtgtcc attttaactg atgaaaagta ctttggtggt agttttgaaa gattacaagc
     8881 attgacgaca aaaacaacat tacccgtatt atgcaaagac tttattatag acccgcttca
     8941 aattgatgtt gctaaacaag ctggtgcatc tatgatttta ttgatcgtta acatcttatc
     9001 tgataaacaa ttgaaagatt tatataacta cgctatatcg caaaatctag aagtgttagt
     9061 tgaagtacat gatcgccatg aattagaacg tgcctataag gttaatgcta aattgattgg
     9121 tgtaaataac agggacttaa aacgatttgt tacaaatgtg gaacatacaa atactatttt
     9181 agaaaataaa aaaacaaatc attattatat ttctgaaagt ggtattcacg atgcatctga
     9241 tgtaagaaaa atcttgcata gtggtatcga tggcttacta ataggtgagg cgcttatgcg
     9301 ttgtgacaat ctatctgaat ttttaccaca actgaaaatg caaaaggtga agtcatgatg
     9361 aaattgaaat tttgtggctt tacatcaata aaggatgtta cagcggccag tcaattacct
     9421 attgatgcga taggtttcat ccattatgaa aaaagtaaaa ggcatcaaac aattacccaa
     9481 ataaaaaagt tagcgtctgc tgttccaaat catatcgata aagtatgtgt catggtaaat
     9541 cctgatttaa caacaattga acacgtatta agcaatacgt caattaacac aatacagtta
     9601 cacggcacag aatctattga ttttatacag gaaattaaaa agaaatattc aagcattaaa
     9661 atcactaaag ctttagctgc agatgaaaac ataatccaaa acataaataa atataaaggg
     9721 ttcgtagatt tatttattat cgacacaccc tcagtgtcgt atggtggtac cggtcaaaca
     9781 tatgactgga ctattttgaa gcacataaaa gacatacctt atttgatagc aggaggcatt
     9841 aactctgaaa atattcaaac agttaatcaa cttaaattat cacatcaagg ttatgatctt
     9901 gcatcaggta tagaagtaaa tgggcgaaaa gatatagaaa aaatgacagc aattgtaaat
     9961 attgtgaaag gagatagaga caatgaataa acaaatacaa acagaagcag atgaattagg
    10021 tttctttggt gaatatggag ggcaatatgt tccagaaaca ttaatgccag caattattga
    10081 gttgaaaaaa gcttataaag aggcaaaagc agacccagag tttcaaagag aactggaata
    10141 ctatttatca gagtatgtag gacgcgcgac accacttaca tatgctgcat catatactga
    10201 aagcctaggt ggcgctaaaa tatatttgaa acgagaggat ctaaatcata caggcgccca
    10261 taaaattaat aatgcgttag gtcaagcgtt gcttgctaaa agaatgggca agaagaagct
    10321 tgttgctgaa actggtgcgg gtcaacatgg tgtagctagt gctacggttg ctgcattatt
    10381 tgatatggaa cttgttgtct ttatgggaag tgaagatatt aaaagacaac aacttaatgt
    10441 atttagaatg gaattacttg gtgcaaaggt tgtggcagtt gaagatggtc aagggacttt
    10501 atcggatgca gttaataaag cattgcaata ttgggtaagt catgtagatg atacacatta
    10561 tttattaggt tctgcattag gtccagaccc gttcccaacg attgttagag attttcagag
    10621 tgtgattggt aaagaaataa aatcacagat attgaagaaa gaaggtcgac ttccggatgc
    10681 aattgtagca tgtatcggtg gtggctcaaa tgcaatcggt acattttatc catttattaa
    10741 agatgatgtt gcattatacg gtgttgaagc cgcaggtcaa ggcgatgata ctgataaaca
    10801 tgcacttgca attggcaaag gatcacctgg cgtattacat ggtactaaaa tgtatttaat
    10861 tcaagatgaa gatgggcaag tgcaactagc acattctatt tcagcaggac ttgattatcc
    10921 tggtattgga ccagaacatt cttattacca cgacattggt agagtaactt ttgaaaatgc
    10981 tagtgataca caagcaatga atgctttaat caactttaca aaacatgaag gtattatacc
    11041 tgcaattgaa agtgcacatg cactgagtta tgttgaaaga ctagcgccta cgatgtcgaa
    11101 agaagatatt attgtagtaa ctatttctgg acgtggcgat aaagatatgg aaacaattag
    11161 acaatatatg gtagagcgag gtcttgcaaa tgactaaatt atttatacct tatattatgg
    11221 gcaataaaga tttgattgaa aatgcaacat tgttgagtga aaatggtgca gatataattg
    11281 aaattggagt acctttctct gatccggttg ctgatggtcc agttatcatg gaagcaggtc
    11341 aacaagcgat taaacaaggc atcacgatag attatatttt caatcaatta gaaaaacatg
    11401 gtgatcaaat taagtgtaac tatgtattaa tgacgtatta taatattatt tgtcattatg
    11461 gagaacaagc gttttttgaa aaatgtcgag atactggtgt ctacggctta attattcctg
    11521 atttaccata tgaattatcg cagcgtttaa aacaacaatt tagtcactat ggcgtcaaaa
    11581 tcatatcgtt agttgcgatg actactgatg acaaacgtat aaaagatatc gtatcccatg
    11641 cggaaggctt tatttatact gtgacgatga atgcgacaac agggcaaaac ggtgcgtttc
    11701 atccagaatt aaaacgaaaa attgagtcaa ttaaagcgat agccaatgtg ccagttgtcg
    11761 caggatttgg tataagaaca ccacaacatg ttgcagatat aaaagaggtt gcagatggca
    11821 ttgtcattgg tagcgaaatc gttaagcgat ttaaatctaa cacgcgtgag gaaatcatta
    11881 aatatttaca atctatccaa caaacattga ataattaagt ttacttgatt taaaaaaatt
    11941 aggcgaatac tgtttgaaaa agtgaaaaac ggtgaattat aaaattgaat agaaatgata
    12001 caaaagtaat atgagcaaac ccaaacgttc atattacttt ttttgaaatt gtattcaaaa
    12061 atctaaatat tactataaaa gtatacgcaa ttaaagcgtt tatgttttag ttttaacatt
    12121 aactattgta tacttattta gattagattt attatttttg acatttgcag aggggaaata
    12181 gaaaaactgc aaatacggaa atgaaattaa ttaacgagag acaaatagga gtaatgataa
    12241 tgaagtttac aaatttaaca gctaaagagt ttggtgcctt tacagatagc atgccataca
    12301 gtcatttcac gcaaactgtt ggccactatg agttaaagct tgctgaaggt tatgaaacac
    12361 atttagtggg aataaaaaac aataataacg aggtcattgc agcttgctta cttactgctg
    12421 tacctgttat gaaagtgttc aagtattttt attcaaatcg cggtccagtg attgattatg
    12481 aaaatcaaga actcgtacac tttttcttta atgaattatc aaaatatgtt aaaaaacatc
    12541 gttgtctata cctacatatc gatccatatt taccatatca atacttgaat catgatggcg
    12601 agattacagg taatgctggt aatgattggt tctttgataa aatgagtaac ttaggatttg
    12661 aacatactgg attccataaa ggatttgatc ctgtgctaca aattcgttat cactcagtgt
    12721 tagatttaaa agataaaaca gcagatgaca tcattaaaaa tatggatgga cttagaaaaa
    12781 gaaacacgaa aaaagttaaa aagaatggtg ttaaagtaag atttttatct gaagaagaac
    12841 taccaatttt tagatcattt atggaagata cgtcagaatc aaaagctttt gctgatcgtg
    12901 atgacaaatt ttactacaat cgcttaaaat attacaaaga ccgtgtgtta gtacctttag
    12961 cgtatatcaa ctttgatgaa tatattaaag aactaaacga agagcgtgat attttaaata
    13021 aagatttaaa taaagcgtta aaggatattg aaaaacgtcc tgaaaataaa aaagcacata
    13081 acaagcgaga taacttacaa caacaacttg atgcaaatga gcaaaagatt gaagaaggta
    13141 aacgtctaca agaagaacat ggtaatgaat tacctatctc tgctggtttc ttctttatca
    13201 atccatttga agttgtttat tatgctggtg gtacatcaaa tgcattccgt cattttgccg
    13261 gaagttatgc agtgcaatgg gaaatgatta attatgcatt aaatcatggc attgaccgtt
    13321 ataatttcta tggtgttagt ggtaaattta cagaagatgc tgaagatgct ggtgtagtta
    13381 aattcaaaaa aggttacaat gctgaaatta ttgaatatgt tggtgacttt attaaaccaa
    13441 ttaataaacc tgtttacgca gcatataccg cacttaaaaa agttaaagac agaatttttt
    13501 aggaagggaa ttatcaaaac atgaaattta cagagttaac tgttaccgaa tttgacaact
    13561 ttgtacaaaa tccatcattg gaaagtcatt atttccaagt aaaagaaaat atagttaccc
    13621 gtgagaatga tggctttgaa gtagttttat taggtattaa agacgacaat aacaaagtaa
    13681 ttgcagcaag ccttttctct aaaattccta ctatgggaag ttatgtttac tattcgaatc
    13741 gtggtccagt aatggatttt tcagatttag gattagttga ttattattta aaagagttag
    13801 ataaatattt acagcaacat caatgtttat atgttaaatt agatccgtat tggttatatc
    13861 atctatatga taaagatatc gtgccatttg aaggtcgcga gaaaaatgat gccctagtaa
    13921 acttgtttaa atcacatggt tacgagcatc atggctttac aactgagtat gatacatcga
    13981 gccaagtacg atggatgggc gtattaaacc ttgaaggtaa aacacccgaa acattgaaaa
    14041 agacatttga tagtcaacgt aaacgtaata ttaataaagc gataaactat ggtgttaaag
    14101 tcagattcct tgaacgtgat gagttcaatc ttttcttaga tttatatcgt gaaactgaag
    14161 agcgtgctgg atttgtatca aaaacagatg attattttta taactttatt gacacatatg
    14221 gagataaagt attagtacca ttagcatata ttgaccttga tgaatatgtg ttaaagttgc
    14281 aacaggaatt gaatgacaaa gaaaatcgtc gtgatcaaat gatggcgaaa gaaaacaaat
    14341 cagataagca aatgaagaaa attgcagaat tagataagca aattgatcat gatcagcatg
    14401 aattattgaa tgcaagtgaa ttgagcaaaa cggacggccc aattctaaac cttgcttctg
    14461 gcgtttattt tgcaaatgca tatgaagtga attatttctc tggtggttca tcagaaaaat
    14521 ataatcaatt tatgggacca tacatgatgc attggtttat gattaactat tgcttcgata
    14581 atggctatga tcgttataat ttctatggtt tatcaggtga ttttacggaa aacagtgaag
    14641 attatggcgt ataccgcttt aaacgtggat ttaatgtaca aatcgaagaa ttaatagggg
    14701 atttctataa accaattcat aaagtgaaat attggttgtt cacaacattg gataaattac
    14761 gtaaaaaatt aaagaaatag atgtaaatga tgttagggct tatagttatt gatactatag
    14821 gctctttttt atatgttttt taataaagcc tcgaataatg atatattaaa tgacaagttt
    14881 aacaagtgat tgcaataaat ataaatatga attgcacaac ctatttgtaa atgattgagt
    14941 tgagtatact ttttaattca ttcaatatga ctcaaaacaa gccaatatgt attatatttt
    15001 tggtgaataa accttagcat aacaatttat gtctgattat atatgtgtgt gtttgcaagt
    15061 gtgtgatatc aaatgtcata tttgtctaat tgtaatttat aaaatgcatg agcaatgatt
    15121 gctgtaacaa attctagcaa agtattcagt ttgtatttta gaaataaaaa tgatgataga
    15181 tgtatgatcg atataaaaga tttaatatgc accaaaatga taacgtgagt aattggttta
    15241 atgaaacata acatgaatgt aaatttagct tactgacata aacactacac aaacatacag
    15301 ttatataagt ccccttatgg aatttcacat tctagtttac ataatatata ttataggaag
    15361 ttatatgtgt gtaacgcaaa aggtacccta catcataatc attatctaat atcgtcacat
    15421 aacttactta tgctataatc atggtattat attgtttgga gtgatttgat gagatttgtc
    15481 tttgatattg atggtacgct ttgttttgac ggccgattaa ttgaccagac tattattgat
    15541 acattgttac aattacaaca tgatggtcat gaacttatat ttgcatcagc acgtccgatt
    15601 cgtgatttgt tgccagtttt accatcagta tttcatcagc acacattaat tggcgcaaat
    15661 ggtgctatga tttcacagca atcaaagatt tctgttatca aaccaattca tactgataca
    15721 tatcatcata tcttcaaaat aattcaaaag tatgagttag attatattat tgatgatgat
    15781 tggaattatg ctgcacaact tgacgctgag aacgcgattt ttgagcgttt agatccacat
    15841 aagctggcca gttgtattga tgttgcaaat atcgacacac caatcaagat tattttatta
    15901 aatatagacc cggcacaaat tacaactata ttagacgagc tagataaata ccatcaagaa
    15961 ttggaaatga ttcaccattc aaatgagtat aacattgata taacagcgca aaatattaac
    16021 aaatatactg cattacaata tatatttgat gcagatgtta aatatatagc atttggtaat
    16081 gaccacaatg atattgtcat gttacaacat gctagtagtg gctatattat aggaccatca
    16141 gaagcataca cacacgcaat attgaaactt gataaaatca aacacatcaa taataatgca
    16201 caagctattt gcaaagtctt aaaatcatat aaataaaaac acccctatca aatgataatc
    16261 attatcaatc gataggggct attttaataa aattcgtcct cgaacatttc ttcctcttca
    16321 tctaatccaa ataattctgc catttctcca tgttcaatta acatgtttaa atatgcatcg
    16381 cggagttctt cttcactcat atcattaatc atttctttaa gactatcaat ccacatattt
    16441 ctgcgtaatt gatagtcttc ttcaacttcg tttaacatca ttatatgttt atttgctgct
    16501 tctggactag ctgtaaagag taatgcaatc atatgtttac atatcactcg tcttccatca
    16561 gcatgaggac aattacatat ggattttcta ggatgttcca tatcaatata acaacgatat
    16621 actttgttgc cactgccctt tacttcagcc tcatgctgcg tttctgaaaa tgattttaag
    16681 ttaatgacgc attcactttg ataataatta aagcctcttt ctatagaacg aatacttgca
    16741 atatcaagta atcccattaa tgatactcct ttttattatt atttttaaat aaagaaaata
    16801 aaatagataa gtgtctagat taaaatactt gatttatcta tattttataa caagtctaga
    16861 attatcgcat tcttaaataa ctaatatgaa aatgcttgca ctaattcttt tgtataaggg
    16921 tgtctatcaa cattaaataa ttcctctatt gcaaaatcat cgactatcat gccatcctta
    16981 agaacgataa ttctattaac taagcgttgt aacacggata aatcatgaga aataacgata
    17041 aaatgattta agttcgtaat cgtttgcgct tttaatatat tgattacatt ttgttcagct
    17101 ataacatcta aatttgaagt tatctcatca catattaaaa cgcgaggctg tgctaataac
    17161 gaacgcatga cattaaatct ttgtaattgt ccgccactca cttcgcttgg taatttagtc
    17221 aataattgcg cgtttaactc aaaagtagat aaatgttgta ataataattg atcctgagca
    17281 gtattatcag ttagacctct gtaataatat aacgcttctt ttaatgaggt ctcaatcgtc
    17341 caatcagggt taaagctagt taaagggtgt tggaaaatcg gtaacacagc attgtcactt
    17401 aagtaaatct ctcctttaac aggtttaaac aagccaagaa ccaatgaagc gagcgtactt
    17461 ttaccacagc cactttcgcc taaaatacca acattttctc catcaggtat agtaatattg
    17521 atatcttgta gcaccatctg ctttttatta taaccaaaag tcacatgttt taactcaatc
    17581 atagtaatcc ctctttaatt gtgttctata tttaattaga cgttcagtat acggatgcaa
    17641 atgctcatac ttgaaatgat taatattacc tcgttcaatg atttgacctt cttttaaaac
    17701 ataaatgtac tgacaatatt tcaatacatg acttaagtta tgtgtgataa taaataatgt
    17761 ttgaccatgt tctaatacaa tatgctgtaa taaatccatc acttgattac cgttcaaagc
    17821 atccaatgat gcaactggtt cgtctgcaat gattaattta ggctccaaca tgagaacgct
    17881 tgctatgtat acgcgttcaa gttggccccc agaaagttgg aaactatatt tatttaatat
    17941 atctttgctt tgtaaattaa cccacgacaa agccttatca actttggaca aagcctcttc
    18001 tttactacct ttataatgct tacgataaat cgcagttaac tgtttaccta atttagtatg
    18061 gtcgttaaaa ctttctgcat aattttgaga aatatagcca attgtatgac cataatattg
    18121 actcaatcta ctaacatttt ccccatcaaa ttggtacgaa tcatacgtgc agcttaaatc
    18181 aaatggtaaa tattcaagta aagctttagc aatcaaactt tttccagcgc cgctctctcc
    18241 aatcaaggca ttaatctgtt gactaaaaat tttcaaatca atccctttaa taagagattt
    18301 ctcactagta ttctttattg ttaaattttg tatatcaatg agactcatca tattcacccc
    18361 gttgtttcag caatctatct cttagtgcat caccggttaa attaaaaatt aaaatagtta
    18421 tagcaatgac tgaagcaggt gcaatcaaca taattggatg agacgaaata aaatcacgac
    18481 cttgttgcaa catagcgccc cactctggtg ttggcggttg tgcacctaac ccaataaatg
    18541 atagtgaact tatatataga atgattttac cgaaatcaac gaccatcaaa acgataatag
    18601 ccggtataat tttaggtgtt aaatgacgta ttaatattgt tcttgttggt acatgaaata
    18661 attgtgccat ttttatataa ggcttattca tttcgctatt aactatactt ctagtcaacc
    18721 ttgtgtaatt catccatttt attaatgtaa ttgagataac taaattccat aaagatggtt
    18781 gaaaaaaact tgctaaagca atcatgatga taaattctgg aatacttaga ccaacatcaa
    18841 taaaccttaa cactaatcgt tcaatccacc cttttttgta tccggcaaat agacctagtg
    18901 taacacctat gacaacgata gctattaatg ttaaaacagt aacaaacaat gttgaacgtg
    18961 caccgataat aattcgggta aataaatctc tcccataatc atcagttcct aataaatgca
    19021 accaactaat aggttcaaaa gtttgtgata aattgacttt ggttgcattt tcactactga
    19081 caaagaattg cagtacaatt accacaaaaa taaatgcaac gaatacaaaa aatatcaggt
    19141 tattctttga aaatatttta tgcatgacgg tcactacttt ctgatatcaa tggtgtattg
    19201 gttttgattt ttggatttcc taattgtaaa cgctgcttcg gatcaagtaa taacgttaat
    19261 aaatcagcaa tcgtattgat aataacaacg aagaagccaa taaataacac gcatccttga
    19321 ataacaggat aatctcgaga tttaatacta tccattaata gataaccaat accaggtata
    19381 tcaaataaat tttcaatcac tacagtacca cctattagac tgccaagtga aatccctagt
    19441 aatgggataa tcggcaaaat tgttggtttt agtaaatcat gaattaaaat ataacgttca
    19501 ttcataccgc gtaatcttga tgcttgtacg atattacttt gcaataacat caataaatta
    19561 gaacgcacta aacgaatgat gtatgcacac atacctaaag atagcgtgat tacaggtaat
    19621 ataaactgac ttagtataac gctatctata ttcattaaat ttgtgacaat aaataataaa
    19681 ataataccga taaagaacgc tggtaaacta atcgatagtg ttgagatcac tctaatcact
    19741 ttatccgtcc acttatgaaa tcgtttggct gctataatgc cgagcggtat agatatgcat
    19801 aacgacacta ctaatgttga aaatgatatg agtaatgtta tgggtgcata gttgaataat
    19861 atctgtgtta ccggttcttt tgattcaaaa ctttttccta aattaaaatg taataaatga
    19921 ttcatccaat gccaccactg taccaataaa gaatcattta atcccaattt atctttggtt
    19981 gcatttattt gttccgtcga cacttgtgct acatcaagat gtaatatttt atcaacagga
    20041 ttgcctggtg ataatttcat taaaatgaat gtaagtgtag aaataacaaa taaaacaact
    20101 atcatttgca tcagtctata caacatagac tttattatga acataatagt ccccctcctt
    20161 gtgtaagtta ctaacacttt ctttttacat gagaatggcg catgtatatg caacttacat
    20221 attaagaact aacgttcatt atagtattat ccataaagaa attgaagtat atttaatttt
    20281 ttaacaaaat cattataaaa tataatattt tgaatcaagt caaccatgta aaatataaaa
    20341 aagtcaaaac aaaaacaact atagcactgt attccatctc tttcgaaata attgttactg
    20401 cagtgtaact taaaagtcga tgattttgtg catatagttg tcgaatatta ttttttatct
    20461 ttacggcgaa gttcagcgcc ctcatagccg tatttttcaa tttgcttttc taatttacgc
    20521 gcttttcttt ctttacgcca atttctagta aaataccata atagaaaact aattaataaa
    20581 ctcataa
//
LOCUS       DAMQWL010000041        19845 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.041, whole genome shotgun sequence.
ACCESSION   DAMQWL010000041 DAMQWL010000000
VERSION     DAMQWL010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 19845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19845
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.041"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..588)
                     /locus_tag="PF788_001323"
     CDS             complement(<1..588)
                     /locus_tag="PF788_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDG6303588.1"
                     /translation="MKVNPNNIELIISAVKEEQYPETELSEVALSGRSNVGKSTFINS
                     MIGRKNMARTSQQPGKTQTLNFYNIDEQLIFVDVPGYGYAKVSKTQREKFGKMIEEYI
                     TKRENLQLVIQLVDLRHDPTQDDILMYNYLKHFDIPTLVICTKEDKIPKGKVQKHIKN
                     IKTQLDMDPDDTIVSYSSIQNNKQQQIWNLIEPYIS"
     gene            complement(742..2004)
                     /gene="clpX"
                     /locus_tag="PF788_001324"
     CDS             complement(742..2004)
                     /gene="clpX"
                     /locus_tag="PF788_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HDG6303589.1"
                     /translation="MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSE
                     IVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPK
                     EDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
                     LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTA
                     SVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYD
                     EQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKM
                     LELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVI
                     TAQTINEETEPELYDAEGNLINNSKTSA"
     gene            complement(2155..3456)
                     /locus_tag="PF788_001325"
     CDS             complement(2155..3456)
                     /locus_tag="PF788_001325"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDG6303590.1"
                     /translation="MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGF
                     RKGKVPRPIFEQRFGVEALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGK
                     DFIFEATVTVEPEVKLGDYKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVV
                     ENGDTVNIDFSGSVDGEEFEGGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVT
                     FPEEYHAEELAGKEATFKTKVNEIKFKEVPELTDEIANELDAEANTVDEYKENLRKRL
                     AEQKATDAENVEKEEAITKATDNTTIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTY
                     FQISGQDETQLREQMKDDAEQRVKTNLTLTAIAEAEKIEATDEDIDKELEKMSKQFNI
                     SVEDIKNTLGNTDIIKNDVRIQKVIDLLRDNAKFVEGTKED"
     gene            complement(3504..3614)
                     /locus_tag="PF788_001326"
     CDS             complement(3504..3614)
                     /locus_tag="PF788_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303591.1"
                     /translation="MQNNTQHFNIVLTKKVDLQIYKRCDFNVCIGNRPMI"
     gene            complement(3619..4548)
                     /locus_tag="PF788_001327"
     CDS             complement(3619..4548)
                     /locus_tag="PF788_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303592.1"
                     /translation="MSDIIQFPNSSKKLYKDIKRAEQDQNYDLMYEYIVQYERQFELT
                     EEIAMMKCRMLYETGSFLELREETIVLLKTGIQQYDALMIYYVKSLIGLGQYFEAVEV
                     IHQIIDEVKDHKTRMALHPLKEFAKSKLIEDEKRLTQSLADFDTLSMREQTHLILKLI
                     DNGHFQFQETVLYILKSNTYSYNLISLMIEYLRFANCTQELTIEKYGMDVTFVPANLK
                     GLEHTTLKEKVIPNVMETLNDGALHIAEEAHHIMNNHSIMIYPIDIETLFETNKWINA
                     YECYFKNMLGLKCELQSIDAFNFIQQLDLNNNS"
     gene            complement(4567..5175)
                     /locus_tag="PF788_001328"
     CDS             complement(4567..5175)
                     /locus_tag="PF788_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDG6303593.1"
                     /translation="MSKFDEQIIVVPREIIFNNEKNTFNGFLNKNKPEGQNIFDALSQ
                     YEVKRRGDMEEDPSYKQLISYCLLENEHGEILVYERLSGGGEARLHGQSSIGVGGHMN
                     DVPGAESINEVLRVNAQRELEEEVGLSEQDSQNMEYIGFINDDNNEVGKVHIGVVFKI
                     TVSTNDVEAKETDTLRIKWVEKGNIESYDDFETWSALILQDL"
     gene            complement(5317..5673)
                     /gene="rplT"
                     /locus_tag="PF788_001329"
     CDS             complement(5317..5673)
                     /gene="rplT"
                     /locus_tag="PF788_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDG6303594.1"
                     /translation="MPRVKGGTVTRARRKKTIKLAKGYFGSKHTLYKVAKQQVMKSGQ
                     YAFRDRRQRKRDFRKLWITRINAAARQHEMSYSRLMNGLKKAGIDINRKMLSEIAISD
                     EKAFAQLVTKAKDALK"
     gene            complement(5720..5920)
                     /gene="rpmI"
                     /locus_tag="PF788_001330"
     CDS             complement(5720..5920)
                     /gene="rpmI"
                     /locus_tag="PF788_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDG6303595.1"
                     /translation="MPKMKTHRGAAKRVKRTASGQLKRSRAFTSHLFANKSTKQKRQL
                     RKARLVSKSDMKRVKQLLAYKK"
     gene            complement(5949..6476)
                     /gene="infC"
                     /locus_tag="PF788_001331"
     CDS             complement(5949..6476)
                     /gene="infC"
                     /locus_tag="PF788_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDG6303596.1"
                     /translation="MSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAER
                     VDLDLVVVAPNAKPPVARIMDYGKFKFEQQKKEKEMKKKQKIINVKEIRLSPTIEEHD
                     FQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKEIGQRVLEKYADECKDIATVEQKPKM
                     DGRQMFIMLAPTAEK"
     misc_feature    complement(6505..6630)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00558"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L20 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00558"
     gene            complement(6705..8198)
                     /locus_tag="PF788_001332"
     CDS             complement(6705..8198)
                     /locus_tag="PF788_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDG6303597.1"
                     /translation="MSKVQNESNNVVKRGLKDRHISMIAIGGCIGTGLFVTSGGAIHD
                     AGALGALIGYAIIGIMVFFLMTSLGEMATYLPVSGSFSTYATRFVDPSLGFALGWNYW
                     FNWVVTVAADITIAAQVIQYWTPLQGIPAWAWSALFLVIIFSLNSLSVRVYGESEYWL
                     ALIKVVTVIVFIAIGLLTIVGIMGGHVVGFEIFNKGEGPILGGNLGGSLLSILGVFLI
                     AGFSFQGTELIGITAGESENPERAVPKAIKQVFWRILLFYILAIFVIGMLIPYDSSAL
                     MGGSDNVATSPFTLVFKNAGFAFAASFMNAVILTSVLSAGNSGMYASTRMLYSMSKDK
                     LAFEAFGKTNKNGVPYMSLLVTAIIVVIIFVLQSLTKGAYEYIVAASGLTGFIAWVGI
                     AVSHYRFRRAFDKQNYDKSKLKYTAKLFPFGPLFAGFLCIVVIIGQDVDFIKTGDFNF
                     SRFLITYMGIPVFLAFFIYHKLRYKTKKIPLEQVDLRQDVSMDEIKG"
     gene            complement(8624..10561)
                     /gene="thrS"
                     /locus_tag="PF788_001333"
     CDS             complement(8624..10561)
                     /gene="thrS"
                     /locus_tag="PF788_001333"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDG6303598.1"
                     /translation="MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNG
                     QLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEG
                     GFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELI
                     DAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIY
                     GTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRRE
                     IERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPM
                     NCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRP
                     DQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEA
                     ADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDG
                     EHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQ
                     DELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQE
                     TVEKDEFIWNLVDEIRLKKHR"
     gene            complement(10759..10881)
                     /locus_tag="PF788_001334"
     CDS             complement(10759..10881)
                     /locus_tag="PF788_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303599.1"
                     /translation="MFDENMVNKLDDYYFIYGICNEYPDQDRYLKQRYLIHKLY"
     gene            complement(10974..11894)
                     /gene="dnaI"
                     /locus_tag="PF788_001335"
     CDS             complement(10974..11894)
                     /gene="dnaI"
                     /locus_tag="PF788_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HDG6303600.1"
                     /translation="MKQFKSIINTSQDFEKRIEKIKKEVINDPDVKQFLEAHRAELTN
                     AMIDEDLNVLQEYKDQQKHYDGHKFADCPNFVKGHVPELYVDNNRIKIRYLQCPCKIK
                     YDEERFEAELITSHHMQRDTLNAKLKDIYMNHRDRLDVAMAADDICTAITNGEQVKGL
                     YLYGPFGTGKSFILGAIANQLKSKKVRSTIIYLPEFIRTLKGGFKDGSFEKKLHRVRE
                     ANILMLDDIGAEEVTPWVRDEVIGPLLHYRMVHELPTFFSSNFDYSELEHHLAMTRDG
                     EEKTKAARIIERVKSLSTPYFLSGENFRNN"
     gene            complement(11894..13294)
                     /locus_tag="PF788_001336"
     CDS             complement(11894..13294)
                     /locus_tag="PF788_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation and membrane attachment
                     family protein"
                     /protein_id="HDG6303601.1"
                     /translation="MGRQAFEFGLRPKDQFKVMQHFDLNTNHLEVLNRLYTPLIGTQA
                     VGLYHFMTQFVKESHNETLILSHYIFMNELKINLLEFRQQMDLLEAIGLLKAFVKHDE
                     QETQFVYQLIQPPSAHLFFNDPMLSIFLYSEVEHRRFHELKKYFEYQQIDLSEFKQVT
                     RQFTDVFKVPSTKIDIDTSDIPINEPYQGIDLSNESFDFEMLRQMLGKHFISQDIVTK
                     DAKRLITQLATLYGLTADGMKHVILNSITSGQQLSFEEMRKQARSYYLMEHENQMPKL
                     QVKSPATSSSAGKSSEVNPKPQSDEWFELLEQTSPIDMLASWSESEPTISQKTMVEEL
                     IEREKMSFGVINILLQFVMLKEDMKLPKAYILEIASNWKKKGIKTAKEAYNYAKKVNQ
                     PKNEGSSGNYQKRGSYYGQRNRISKEKTPKWLENRDKPSEEDSAKDNSVDDQQLEQDR
                     QAFLDKLSKKWEEDSQ"
     gene            complement(13295..13765)
                     /gene="nrdR"
                     /locus_tag="PF788_001337"
     CDS             complement(13295..13765)
                     /gene="nrdR"
                     /locus_tag="PF788_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor NrdR"
                     /protein_id="HDG6303602.1"
                     /translation="MKCPKCNSTQSKVVDSRHADELNAIRRRRECENCGTRFTTFEHI
                     EVSQLIVVKKDGTREQFSREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDEGHTE
                     VSSRDIGEHVMNLLMHVDQVSYVRFASVYKEFKDVDQLLASMQGILSENKRSDA"
     gene            complement(13975..15000)
                     /gene="gap"
                     /locus_tag="PF788_001338"
     CDS             complement(13975..15000)
                     /gene="gap"
                     /locus_tag="PF788_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDG6303603.1"
                     /translation="MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHL
                     INYDTTHGKYNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNH
                     GDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGP
                     VAKVLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALK
                     EVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQ
                     PLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTS
                     KETVSAS"
     gene            complement(15170..15793)
                     /locus_tag="PF788_001339"
     CDS             complement(15170..15793)
                     /locus_tag="PF788_001339"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDG6303604.1"
                     /translation="MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGS
                     KGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQE
                     YLKQGYNVIMDIPLLFENELENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYS
                     QISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED"
     gene            complement(15809..16681)
                     /gene="mutM"
                     /locus_tag="PF788_001340"
     CDS             complement(15809..16681)
                     /gene="mutM"
                     /locus_tag="PF788_001340"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDG6303605.1"
                     /translation="MPELPEVEHVKRGIEPYVINQKIEHVIFSDKVIEGKAQGKETII
                     KGIELDTFKTLSEGYTITNVERRSKYIVFQLDNKREQRTLISHLGMAGGFFIVDELED
                     IMIPNYRKHWHVIFELSNDKKLIYSDIRRFGEIRNVASVASYPSFLEIAPEPFSNEAL
                     TYYLNRIHQQSNKNKPIKQVILDHKVIAGCGNIYACEALFRAGVLPDKKVKDLTHQQQ
                     EMVFYYVREVLEEGIKYGGTSISDYRHADGKTGEMQLHLNVYKQPVCKVCGSQIETKI
                     IATRNSHYCPVCQK"
     gene            complement(16697..19327)
                     /gene="polA"
                     /locus_tag="PF788_001341"
     CDS             complement(16697..19327)
                     /gene="polA"
                     /locus_tag="PF788_001341"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDG6303606.1"
                     /translation="MNKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAVYGFAMLLEKI
                     LKEEKPNHFLVAFDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRY
                     ELDNYEADDIIGTLSKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYT
                     PDFIAEKYNGLTPNQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHL
                     DEISGKKLKEKLQNSKEDALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKK
                     LEFKQLLADIDQSASVEDAIEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNIL
                     KFSLFTGEKHIVINADDINNYVELVSWLENPNSKKVVYDAKKTYVASHRLGIDIQNIS
                     FDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS
                     ITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEI
                     QEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQ
                     GEHPIIDYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLAQTGRLSSVDPNLQ
                     NIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIH
                     TATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYL
                     ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQG
                     SAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENAL
                     QLDVPLKVDSSYGATWYDAK"
     gene            complement(19621..>19845)
                     /locus_tag="PF788_001342"
     CDS             complement(19621..>19845)
                     /locus_tag="PF788_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303607.1"
                     /translation="IYVHYEHEKRVQLLKQQIKDHPRQEVYTVESLPFEHYMHHPSPI
                     NKNYQEWFNNYEELPKMTKVKYIPFGSDDS"
BASE COUNT         5984 a         3813 c         2685 g         7363 t
ORIGIN      
        1 tgaaatatac ggttcaatta aattccatat ttgttgttgt ttattatttt gaattgatga
       61 ataacttaca attgtatcgt ctgggtccat atctaattgt gtcttaatat ttttaatatg
      121 cttttgaacc ttaccttttg gaattttgtc ttctttagtg catataacta aagtaggaat
      181 atcaaaatgt ttcaaataat tgtacattaa gatatcatct tgtgttggat catgtcttaa
      241 atcaactaat tgaataacta attgcaaatt ctctctctta gttatatatt cctcaatcat
      301 tttcccaaat ttttcacgtt gtgttttact tactttagca tatccatacc ctggaacatc
      361 cacaaaaata agttgttcat ctatattata aaaatttaac gtttgcgttt tgccgggttg
      421 ctgtgatgta cgtgccatat tttttctgcc aatcatacta ttgataaatg tagacttacc
      481 tacattagat cgaccgctca gtgcaacttc agacaattct gtttctggat attgttcttc
      541 ttttactgca ctaatgatta attctatatt attaggatta actttcattt tatatcctca
      601 cttttttata ttctctttca attctaccat tatataatat ttgaaccttt cggtatacat
      661 tataaaaaag ctccgatcaa agttaaacta tttgagcgtc aactttgatt ggagcttttc
      721 acttttataa cacatcaatg attaagctga tgttttacta ttattaatta aattgccttc
      781 tgcgtcgtat agttctggtt cagtttcttc attaattgtt tgtgctgtaa taactacctt
      841 cgttacattt tcgttagaag gcacatcaaa cataatatcg attaacgatt cttctatgat
      901 tgaacgtaaa ccacgcgcac ctgtttttct ttcaattgct ttttcactaa ttgctgataa
      961 agcttcttca gtgaactcta aatccacatc atctaattcc agcattttag tatattgttt
     1021 cacaagtgca tttttaggtt gcgttaagat gtttttcaac gcagttacat ctaatgtttc
     1081 taaattagct acaattggca cacgtccgat aaattcagga atcaaaccat aggcttgcaa
     1141 atcttctggg cgaatttgtg ctaataatgc ttgttcgtca tatttatcag cttcattgct
     1201 tgagaaacca ataacttttt caccaagacg gcgcttaatc acttcttcaa taccatcaaa
     1261 ggcaccacca agaataaata agatatttgt tgtatcaatt tgaatcattt cttggtttgg
     1321 atgtttgcgt ccaccttgtg gcggaacact tgcagtcgta ccttctaaga ttttaagcaa
     1381 tgcttgttga acaccttcac ctgaaacgtc acgtgttata gatgtgtttt cagatttacg
     1441 tgcaatttta tcaatttcat ctacataaat aatacctttt tcggctttat caatgtcaaa
     1501 gtcagctgct tgaattaatc tcaacaagat attttcaaca tcatcgccta cataaccagc
     1561 ttcagttaaa cttgtcgcat ctgcaattgc aaatggtaca ttcaacgtct tggctaaggt
     1621 ttgagctaat aatgttttac cactacctgt tggcccaatt aatgcaatgt tacttttttg
     1681 taattcaaca tcatcttctt ttggtcctaa ttgttgaata cgcttatagt ggttataaac
     1741 agctacagct aaagattttt tagctttttc ttgaccaata acatattcgt ttaaatgatc
     1801 cataatttct ttaggagtag gtaattctgt catcgcttca gaagtgtttt gagctaattc
     1861 ttcttcgacg atttctgagc ataattcaat acactcatta caaatatata caccacttcc
     1921 tgctacaagt ttttttactt gatcttggtc ttttccgcag aaagagcatt tcaaattttc
     1981 ttcatcttca ttgaatttaa acattctttt tacaccccta ttcgttaaag actatactag
     2041 attggatgtt acaatgcaac atattaacat acaaactttt tgcttaaaga atagtagcag
     2101 atacataagc tatgcatctg ctactcattt ttgtaattta atatttaatg aagattaatc
     2161 ttctttagtt ccttcaacga actttgcgtt atctcttaat aaatcgataa ctttttggat
     2221 acgaacatca tttttaatga tatcagtatt acctaaagta tttttgatat cttcaactga
     2281 gatattaaat tgtttactca ttttttctaa ttctttatcg atatcttcat cagtagcttc
     2341 gattttttca gcttcagcga tcgcagttaa agttaagtta gttttaacac gttgttctgc
     2401 atcgtctttc atttgctctc ttaattgagt ttcatcttga cctgagattt ggaagtacgt
     2461 ttgtaaatct aaaccttgtt gttgaattct ttgtgcaaat tcagacacca tacgatctaa
     2521 ttcagtatta accattgctt caggaatatc gattgttgta ttatcagtag cttttgtaat
     2581 cgcttcttct ttttcaacat tttcagcatc tgtagctttt tgttcagcta aacgtttacg
     2641 taagttttct ttgtactcgt ctactgtatt tgcttctgca tctaattcat tagcaatttc
     2701 atctgttaat tctgggactt ctttaaattt aatttcgtta acttttgttt tgaaagttgc
     2761 ttctttaccg gctaattctt cagcatggta ttcttctggg aatgttacga caacatcttt
     2821 ttcttcgtca actttcatac cttctaattg ctcttcgaaa ccaggtatga atgaacctga
     2881 accgatttct aaatcgtaac cttcagcttg tccaccttcg aattcttctc cgtcaactga
     2941 accactaaag tcgatgttaa ctgtgtcgcc attttcaaca acaccatctt ctttaacgac
     3001 catttcagct aaatgtccta agctgtggtc aatcgcttct tgtaactcat catcagataa
     3061 ttcagtttct tgtttttcaa tttcaagacc tttatagtct cctaatttaa cttctggctc
     3121 aactgtaact gttgcttcaa aaatgaaatc tttacctttt tcaatttgag taacacttac
     3181 ttctggttgt gcaactggtt taatatcagt ttcgtcaatt gcttcaccat aagcatctgg
     3241 taataaaatg tcgatagcat cttgatataa tgcttctaca ccaaagcgtt gttcaaaaat
     3301 tggacgtggc actttacctt tacggaatcc aggtacgtta atttgtttaa ccactttttt
     3361 gaatgcttga tctaacgctt tgtttacttt ttctgcagga acagtaacag ttaataaacc
     3421 ttcgttacct tccttttttt cccaagttgc tgtcatgtat atatacctcc atgattaact
     3481 aatttatttt ttcaacttcc ctattatatc ataggtctat tccctataca aacattgaaa
     3541 tcacaacgtt tatatatttg taaatcaact tttttcgtca aaactatatt aaaatgctga
     3601 gtattatttt gcaacaattt aactattatt attcaaatct aattgctgaa taaaattaaa
     3661 tgcatcgata ctttgtaatt cacatttaag tcctaacata tttttgaaat aacattcgta
     3721 tgcattaatc catttattcg tttcaaacaa agtttcaata tcaattggat aaatcatgat
     3781 agagtgatta ttcataatat ggtgtgcttc ttcagcgata tgtaaagcac catcatttaa
     3841 tgtttccata acgttaggta taactttttc tttaagtgtt gtatgttcta gcccttttaa
     3901 attagctggt acaaaagtta catccatacc atacttttca attgtcagtt cttgtgtaca
     3961 atttgcgaac cttaaatact caatcattaa actaatgagg ttataactgt acgtattaga
     4021 ttttaatata tataataccg tttcttgaaa ttgaaaatga ccattgtcta ttaacttcaa
     4081 aatcaagtgc gtctgttccc tcattgataa cgtatcaaaa tcagctaatg actgagtcaa
     4141 tcgtttttca tcttcaatta attttgactt agcaaattct ttaagaggat gtaatgccat
     4201 tcttgttttg tgatctttga cttcatcaat aatttgatga attacttcta ccgcttcaaa
     4261 atattgtccc aaaccaatca aacttttcac gtaataaatc atcaatgcat catattgttg
     4321 tatgccagtt ttcaataaga caattgtttc ttctcttaat tcaagaaatg accccgtctc
     4381 atataacata cggcatttca tcattgctat ttcttcagtg agttcaaatt gacgttcata
     4441 ttgcacaata tattcataca tcaggtcata gttttggtct tgttcagcac gttttatatc
     4501 tttatataac tttttcgaag agttaggaaa ctgaataata tctgacatat atgtcacctc
     4561 gtttgattat aaatcttgaa ggattaatgc actccacgtt tcgaaatcat catatgactc
     4621 tatgttgcct ttttcaaccc attttattcg taaagtatct gtttctttag cttctacatc
     4681 attcgtactt acagtgattt taaatacaac accaatatgt accttgccca cttcattatt
     4741 atcgtcatta ataaaaccga tatattccat attttgtgaa tcttgctcac ttaaacctac
     4801 ttcttcttct aattctctct gtgcattaac tctcaatact tcgttaatag attctgctcc
     4861 tggaacatca ttcatatgac cgcctacacc tattgaagat tgtccatgca atcgagcttc
     4921 tccaccgcca gataatcgtt catacactaa tatctcgcca tgctcatttt caagtaaaca
     4981 ataagaaatg agttgtttat atgatggatc ctcttccata tcgccgcgtc gcttaacttc
     5041 atattgactt agcgcatcaa aaatattttg accttctggt ttattcttat ttaaaaaccc
     5101 attgaaagta ttcttttcat tattaaaaat aatttctcta ggtactacaa tgatttgttc
     5161 atcaaattta gacatcgtat aaaactcctc actttaatgt ttgttctctt aaatgcattt
     5221 tagcaaatat gtcatatttt agcgattaaa tgtggcattt tgctatttaa aaaataaaaa
     5281 agagatgaca atgccatctc ttttttataa gtgttattat tttaaagcat ctttagcttt
     5341 agttactaat tgagcaaatg ctttttcgtc agaaattgcg atttctgata acattttacg
     5401 gttaatgtcg ataccagctt ttttcaaacc gttcattaaa cgtgagtagc tcatttcatg
     5461 ttgacgagct gctgcgttga tacgtgtaat ccataattta cggaagtcac gtttacgttg
     5521 acgacggtca cggaaagcat attgacctga tttcattact tgttgcttag ctactttgta
     5581 taatgtatgt tttgaaccga agtaaccttt agctaattta atcgtttttt tacgacgcgc
     5641 tcttgttact gttccacctt taactcgtgg cataaaaaat tcctccttag gtaattccta
     5701 ccgatttctg tatttgttct tattttttgt atgctaataa ttgttttaca cgtttcatat
     5761 cgctcttaga cactaatcta gctttacgta attgacgttt ttgtttagtg ctcttgtttg
     5821 cgaataagtg agatgtgaaa gctcttgaac gttttaattg acctgaagca gttcttttaa
     5881 cacgtttagc tgctccgcgg tgagttttca tttttggcat aatataagtc ctcctgtaat
     5941 agctttaatt atttttcagc tgttggcgct aacatgataa acatttgacg cccgtccatt
     6001 ttaggttttt gttcaactgt tgctatatct ttgcattcat ctgcatattt ttctagcaca
     6061 cgttgaccaa tttccttatg cgtaatggca cgccctctga aacgaataga tactttacat
     6121 ttatcgcctt tagttaagaa tttacgtccg tttttcaact tcgtttggaa atcatgttcc
     6181 tcaattgttg gacttaaacg aatttcttta acattgataa ttttttgttt ctttttcatt
     6241 tctttttctt ttttctgttg ttcgaatttg aatttaccgt aatccataat tcttgcaact
     6301 ggtggtttcg cattcggtgc aacgaccact aagtctaaat ctacacgttc agccatttct
     6361 aaagcttcac gctttgattt aacaccaatt tgttcaccat cttgaccgat taaacgtaat
     6421 tcttttgcac gaattttgtc attgatttga gtttgatctt ttgctatggt tgacacctcc
     6481 aaaattttta cgaaatttgc accaagcaaa aaggaagagc aggtataaaa tacccgctct
     6541 tccttataca cagttatgtg taatgtgatt aacctgccaa ctgctttatg cgtcgctaca
     6601 ggtgagaagc gggtgcttct acttggttcg tttcgtattc aacgttatta atcatatcaa
     6661 caattcacat ttaagtcaac actataactg taattatttt tattttaacc ttttatttca
     6721 tccattgaca cgtcttgacg taaatctact tgttctaatg gaattttttt cgttttatat
     6781 cgaagcttat gataaataaa gaatgctaaa aatactggaa ttcccatata cgtaattaag
     6841 aagcgactaa aattaaaatc tcctgtttta ataaagtcaa catcttgacc aataattact
     6901 acaatacata aaaagccagc aaataatggt ccgaatggga ataatttagc agtatatttt
     6961 aatttagatt tgtcataatt ttgtttatca aatgctcttc taaatcgata atgacttact
     7021 gctataccta cccaagcaat aaaaccagtt aaaccacttg ctgcaacgat atattcgtat
     7081 gcaccttttg taaggctttg taatacgaaa attatcacta caatgattgc tgtaacgagt
     7141 aacgacatat atggcacacc gtttttattt gttttaccaa atgcttcaaa cgctaattta
     7201 tctttactca ttgaatatag cattcgagtt gaagcataca tacctgagtt acctgctgat
     7261 aacacagacg ttaaaatgac tgcattcata aatgatgctg caaacgcaaa tccagcattt
     7321 ttaaacacta atgtgaatgg agacgttgct acattatcac taccccccat taatgcacta
     7381 ctatcataag gaattaacat accgataaca aaaatggcta aaatgtaaaa taataaaatt
     7441 ctccagaata cttgtttaat tgctttcggc acagcacgtt caggattttc tgattcacca
     7501 gccgtaatac caattaactc agtaccttgg aatgagaaac cagcgattaa gaatacacct
     7561 agaattgata acaaacttcc tcctaagttg ccaccaagaa ttggaccttc acctttatta
     7621 aatatttcga atcctacaac atgaccaccc atgattccga caatcgttaa taaaccaatt
     7681 gcaatgaaaa caataactgt aaccactttt atcaatgcca accagtattc actttcacca
     7741 tagacgcgaa ctgataacga attcagacta aaaattataa ctaagaacaa cgcactccat
     7801 gcccaagcgg gtatgccttg caatggtgtc caatattgaa tgacttgtgc tgcaatcgta
     7861 atatctgctg ctacagtcac tacccagtta aaccaatagt tccaaccaag cgcaaaccct
     7921 aaagatggat caacaaatct tgtagcatat gtactaaatg aacctgatac tggcaaatac
     7981 gtagccattt cgccaagtga cgtcattaag aaaaatacca ttattccgat aattgcgtat
     8041 cctattaatg cacccaaagc acctgcatca tgaattgctc caccagaagt tacaaataaa
     8101 cctgtaccaa tacaaccccc aatcgcaatc atagaaatat gacgatcttt aagtcccctt
     8161 ttgacaacat tgttactttc attttgaact tttgacatat aagctccctt tccatgtttt
     8221 agaggccaag aaataaataa cctttattca ctttcatacc cttttttaca gaacatagtg
     8281 atattaaaag taaaaaagtg gctacatacc tttaagatat gcaaccactt tggcaattat
     8341 ctatataagg tagcacatca cattctgtga cagtacagtt cctattcgaa aactgtccca
     8401 atagatataa tttatggttt atatctattt cggcatcttt acctttcact tgttcaactt
     8461 atgtaccata aatacttctg acaagttact aattaaacat gcaacctcta actcaattta
     8521 atattttaac taacttgtaa tatacaggat tcatcacgca taatcaaccc tgtaaaactt
     8581 gatacgcaat aaaagtttta aagcatttta ttgcgacaac tgtctatcta tgttttttca
     8641 aacgaatttc atcaactaga ttccagataa attcatcttt ttcaactgtt tcttggtctt
     8701 gcgatccata ttgacgcaca ttcacttgat tattttcaac ttccttatcc ccaactacga
     8761 tttgataagg tattttttgc atttgagctt ctctgatttt ataacccatt ttttcattac
     8821 ggtcatcaat acttacacga acgccttgag atttcaattc atcttgtaat tggcgcgcat
     8881 aatcataatg taaatcaacg ttaactggaa tgatttgaac ttgttttggc gctaaccaag
     8941 ttgggaatgc acctttagtt tcttcagtta aaaatgctac aaatcgttcc attgttgata
     9001 caacaccacg atgaataaca actggacgat gatgttcacc atcttgacca atataagtta
     9061 aatcaaaacg ttctggtaat aagaaatcaa gttgtgctgt tgataatgtc tcttctttac
     9121 ccatcgctgt tttaacttga acatctagtt tcggaccata gaatgccgct tcaccaatcg
     9181 cttcttcgta cgataagcca agctcatccg ctgcctcttt aagcatattt tcagctttat
     9241 tccacatatc atcatcatca aagtactttt ctttatcttc agggtctcta taacttaatc
     9301 taaagctata atcctcgaaa ccaaagtctt tatacacatc aataatcatg tttacaacgc
     9361 gtttgaattc ttctttaatt tgatcaggtc gaacaaagat atgtgaatca tttaaagtca
     9421 taccacgaac acgttgtaat cctgatacag caccacttgc ttcatatcta tgcatcgttc
     9481 ctagctcagc gatacggata ggtaattcac gatatgaatg tggtttattc gcataaatca
     9541 tcatatgatg tggacagttc attggacgta ataccataga ttcagtttca tctaactgca
     9601 ttggtgggaa catatcttct tgatagtgat cccagtgacc agatgttttg tataaatcaa
     9661 cattagcaag tactggtgta taaacgtggt catatcccat gctaacttct ttatcaacaa
     9721 tgtaacgttc aatttcacgt ctaattgttg caccgttagg taaccataat ggcaaaccag
     9781 caccaactaa ttggctattt gtgaatagtt ctaactcttt accaatttta cgatgatcac
     9841 gttctttacg ctcttctaac atttgtaaat gtgctttcaa ttctttttta tcaaagaaag
     9901 cagtaccgta tatacgttgt aacattttgt tgttactatc tccacgccag tatgcacctg
     9961 ctgtagataa tagtttaaac tctttaattt tagctgttga tggaacgtga actccacgac
    10021 ataaatcagt aaaatcacct tgactatata atgttacatt ttcatcttca ggaatcgcgt
    10081 cgattaattc taatttgtat tcatcattgc tgaataactc tttcgcttca tctcgtgaaa
    10141 ccacttttcg ttcgattttc atattttcgt taacgatttg tttcattgtt ttttcaattt
    10201 gttcaaagtc atcagatgag atgttttggt caatgtcgaa gtcatagtag aatccacctt
    10261 ctattacagg acctacacca aatttaacat taccatataa ccttttaatc gcgtgtgcca
    10321 ttaaatgtgc agtagaatga cgtaatacct ctaacgcttc ttcactacct ggtgtcacaa
    10381 tttcaattga tccatcagtt tcaagcggtt tagttaaatc tacaagttgc ccgttaaatt
    10441 tgccggcaac agctttttta cgtaatccag gactaattga ttgtgctata tcttcagtag
    10501 tagtaccttt atcaaacgcc tttttattac catctggaaa ttgaatatta atttgttcca
    10561 tgttaaaccc tcctatttgc tttataaata cttttatctg acctcgttaa aaaattgaac
    10621 aacaatcatc gttttaacat taaacctatt aacaataaac agggaattta tgacaccaac
    10681 aaacatttat gtctgaaaaa aacaaaaaat cccgccccta tacaagggac gagatcgtcg
    10741 tggtaccacc ctagttatct aatacaattt atgtattaaa tatctctgct taagataacg
    10801 gtcttgatcc gggtattcat tacaaatacc ataaatgaag tagtaatcat ctaatttatt
    10861 aaccatattc tcatcaaaca atggctttct gtgtaatatt gattagatca tcttgtcttc
    10921 aatcatttaa acgatttaga tttgtattca ttatacacca atcattttaa aattcaattg
    10981 tttctgaaat tttctcctga taaaaagtat ggtgttgaca aagatttgac acgttcaata
    11041 atacgtgctg ctttagtctt ctcttcacca tcacgagtca tcgctaaatg atgttccaat
    11101 tcactatagt caaaattaga actaaagaat gttggtaatt catgaaccat tcgataatgt
    11161 agcaaaggtc caattacctc atctctcacc catggagtca cttcttcagc cccaatatca
    11221 tcaagcatta aaatgtttgc ttctcttacg cgatgtaatt tcttttcaaa agaaccatct
    11281 ttaaagccac cttttaatgt tctaataaat tccggtaaat aaataattgt cgaacgtacc
    11341 ttcttagatt tgagctgatt cgcaattgca cctagaataa aagatttacc tgtcccaaat
    11401 ggaccataaa ggtaaaggcc tttcacttgt tccccattag ttattgctgt acaaatatca
    11461 tctgctgcca tagctacatc aagacggtct cgatgattca tataaatatc tttcaatttg
    11521 gcatttaaag tatctcgttg catatgatga gatgtaatta gctcagcttc aaagcgttct
    11581 tcgtcgtact tgattttaca tgggcattgt aaatagcgta ttttaattcg gttattatca
    11641 acatataact caggcacatg cccctttacg aaatttggac aatcagcaaa tttatgaccg
    11701 tcataatgtt tttgttgatc tttatactct tgtaacacat ttaagtcttc atcaatcata
    11761 gcattcgtta attcagctcg atgcgcttcc aaaaattgct taacatctgg gtcattgatt
    11821 acttcttttt ttatcttttc tattcttttt tcaaagtcct gcgacgtgtt aattatactt
    11881 ttaaattgct tcattattga ctgtcctcct cccatttttt agataattta tctagaaatg
    11941 cttgtcgatc ttgctctaat tgttgatcat ctacgctatt atctttagcc gaatcttctt
    12001 cactaggttt atctctattt tctaaccatt taggtgtttt ttcttttgaa atacgattac
    12061 gctgcccata gtatgaacca cgcttttggt aatttccgct agaaccctca tttttaggtt
    12121 gattaacttt tttagcgtaa ttatatgctt ctttagctgt cttaatacct tttttcttcc
    12181 aatttgatgc tatttccaaa atatacgctt taggaagttt catatcttct tttaacatga
    12241 caaattgcaa caaaatatta atgacgccaa aagacatttt ttcacgttca attaattctt
    12301 caaccattgt cttttgcgat atagttggtt ctgattcaga ccaagaagct aacatatcaa
    12361 ttggactcgt ttgttcaagt aactcaaacc attcatcact ttgtggcttt ggattcactt
    12421 ctgaagattt gcccgccgaa gatgatgtag caggagattt cacctgtaat ttaggcattt
    12481 gattttcgtg ttccattaag taatacgagc gtgcttgttt acgcatttct tcaaaggata
    12541 actgttgtcc acttgtaatt gaatttaaaa taacatgctt catgccatct gctgttaaac
    12601 catataaagt cgcgagttgt gtaattaaac gctttgcatc tttggtaaca atgtcttgac
    12661 taataaaatg tttacctaac atttgtctca acatttcaaa gtcaaaagat tcatttgata
    12721 aatcgatacc ttggtacggt tcattaatcg gaatatcact tgtatcgata tctatttttg
    12781 tagacggcac tttaaaaaca tcagtaaatt gtcttgttac ctgtttaaat tcactcaaat
    12841 caatttgttg atactcaaag tatttcttca actcatgaaa tcgacgatgc tcgacttcac
    12901 tatataaaaa gattgacaac attggatcat taaaaaataa atgtgctgaa ggcggttgaa
    12961 ttaattggta aacaaattgt gtttcttgtt catcatgttt gacaaacgcc tttaacaatc
    13021 caatcgcttc aagtaagtcc atttgttgtc taaactctag taaattaatt ttaagttcat
    13081 tcataaaaat ataatgagaa agaatcaatg tttcattatg actttcttta acgaattgag
    13141 tcataaaatg atataaaccc actgcttgcg ttccaattag cggtgtatac agtcgattca
    13201 atacctctaa atgattcgta tttaaatcaa agtgttgcat aactttgaat tgatcctttg
    13261 gtcttaagcc gaattcgaag gcttgtcgtc ccatttaagc atcactccgt ttgttttcgc
    13321 ttaaaatccc ttgcatcgat gctaacaatt gatcaacatc tttaaattct ttatagactg
    13381 atgcaaatct aacatatgaa acttgatcaa catgcattaa caagttcata acgtgttcac
    13441 ctatatctcg tgaagacact tccgtatgac cttcatctcg taattgccat tcaaccttgt
    13501 tagttatgtc ttcaagttgt tgatatctaa ctggtcgttt ctcacaagaa cgcacaagtc
    13561 cattaagtat cttttctctt gaaaactgct ctcttgtgcc atcttttttc acaactataa
    13621 gctgactaac ttcgatatgt tcaaatgtag tgaaacgtgt tccacaattt tcacattctc
    13681 ttcgtcttcg aatggcattt aattcatcgg catgccttga atctacaact ttagattgtg
    13741 tagaattaca tttcgggcat ttcattacat caccctcttt attttgatta tgcctaatta
    13801 tactataaat ctagagatga aaaaagaatc cctcaattta attcatttaa ccaaataatg
    13861 aaacaataaa aaacattata tcgttactta ttaagtaatt tgcatgacaa tattattgta
    13921 ttaaaaataa aaaacctaac tccgaagtca gagttaggct ataaattaat tgtattaact
    13981 tgcacttaca gtttcttttg atgtcaaaag tgctccaatt tgctcagcaa catctacaac
    14041 tctatttgaa taaccccatt cattatcata ccaagcaata acttttactt tattccctga
    14101 catgaccatt gttgattttg catcaataat agctgaattt ggattagtat taaaatcaac
    14161 agacactagt ggttgatgtt cgacttctat gataccttct aaacctgcat tttcaaaagc
    14221 ttggtttact tcttctgcag ttacttcttt ttctaaatca acaactaaat caacgagcga
    14281 tacattcttt gttggtacac gtaatgccat gccgtgtaat ttaccttcta attctggtaa
    14341 tacttctttt aaagctttcg ccgcaccagt agaagtagga ataatgcttt cattacatga
    14401 acgtgcacgt cttaaatctt tatgtggatt atcaatattt ttttggtcat ttgtaatagc
    14461 gtgaacagta gtcattaaac cattaactat tccaaactga ttatttaaaa cttttgcaac
    14521 tggaccaatg caattagtag tacatgaagc attactaaaa atgtcaaatg cttctatatc
    14581 taattggtta tcatttacgc ctttaactac catttgaaca tgtccacctt ttgaaggacc
    14641 agttaacaaa acttttttgg cacctgcttt aatatgtgcg atggctttat caccatgatt
    14701 aaatttacca gttgcatcta tagcaatatc gatatctaat tctttccatg gcaagttttc
    14761 aggattgcga tcagcaacca atttaatttt atgatctcca acttgcaatc cattttcaat
    14821 cggttcaact tttagattat attttccatg tgtcgtatcg taattgatta aatgtgcaat
    14881 tgtttcgggt ggataactag catttatcgc tactacattt aaatttttat tttgtaatgc
    14941 aatacgtaat accattcttc caattctacc cataccatta attgcaatat tcgttgacat
    15001 taaaagcacc ccttgatctt tatgtgttat actttatgga attagtatag catattatat
    15061 gaaatttgaa agcgttttcc gttgatttat ttatcttttt tataaaaaat agtcattact
    15121 tacatacatc aacgcgtacg taaagtaatg acttatttat agtgtaatat taatcttctt
    15181 ctccgtaatt cggcttttca atataacctt cttcttctaa caatctctca aggttttgtt
    15241 ttaattcaag tttatcccct aaattatcga taacatgatc ggccattcgg ctttttttat
    15301 caatagaaat ttggctatag acacgtgctt tcgcatcttc taatgacaaa ttattacgtt
    15361 gcattaaacg atccatttgt atactttcag aagtgtatac aacccacact tcgtctactg
    15421 tattttccaa ttcattttca aataataatg gaatatccat gattacatta tatccttgtt
    15481 ttaaatattc ttgcttttct tcttccataa tatctcgcac gataggatgt atgatagcat
    15541 ttaattctaa gcgtttttct ggatgattaa acactagatc acccatataa cgacgattca
    15601 tctcaccatt ttcatcaatt gcttcatcac caaagacttc tcgtacttga gctaaacctt
    15661 tactcccctt tttaacagct tccctggctg ctttatcagc atctactact ttaaaaccga
    15721 atacggataa gagttctgat actgttgatt ttcctgaggc gattccacct gttagaccaa
    15781 taactttcgg cataatttca ctctttcttt atttttgaca tactggacaa taatgactat
    15841 ttcttgtcgc gatgattttt gtttcaattt gacttccaca cactttgcat accggctgct
    15901 tatatacatt aagatgcaat tgcatctcac cagtttttcc atcagcatga cgataatctg
    15961 aaatacttgt accgccatat ttaatacctt cttctagtac ttctctaaca taataaaaaa
    16021 ccatttcttg ttgttggtgt gttaagtctt ttactttttt atctggtaaa acacctgcac
    16081 gaaacaacgc ttcacatgcg taaatatttc cacaacctgc gattacttta tgatccaaaa
    16141 tcacttgttt gattggttta ttcttattag actgttgatg aattcgattt aaataatacg
    16201 tcaatgcttc atttgaaaaa ggttcaggcg ctatttctaa aaatgaagga taagatgcta
    16261 cagacgcaac atttctaatt tctccaaaac gacgtatatc tgaataaatt aactttttgt
    16321 catttgacaa ctcaaaaata acatgccaat gcttacgata attaggtatc ataatatctt
    16381 caagttcatc tacaatgaaa aaaccgcccg ccatacctaa atgactaatt aatgtacgtt
    16441 gttctcgttt attatctagc tgaaaaacga tatatttact tcttcgttct acatttgtaa
    16501 tggtatagcc ttccgataaa gttttaaaag tatctaattc aattcctttt ataattgttt
    16561 ccttgccttg agctttacct tcgattactt tatccgaaaa tataacgtgt tcaatttttt
    16621 gatttataac gtagggttca attcctcttt ttacatgttc tacttctggt aattcgggca
    16681 taccattaac ctcactttat tttgcatcat accaggttgc accataactt gagtctactt
    16741 ttaatggaac atctaattgc aatgcatttt ccattatctc ttctacaaat tcactaaatg
    16801 aatctacttc tgacttaggt acttcaaaaa ttaattcatc gtgtacttgt aataatagtt
    16861 tagcttgata tgttgtctct ttcatttttt gagcaaattt aaccattgcc agtttaatga
    16921 tatctgcagc actgccctgt attggcgtat tcatagcagt acgttcagca aagccgcgta
    16981 aattaaagtt acgactcgta atatcaggaa tatagcgtcg acgatgtagc aatgtttcca
    17041 cgtaacctaa agctttggca tcttttacaa tatcagacat atattgtttt acacctggga
    17101 aactagctaa ataatcatca atgaatgctt ttgctttttt acgagtaata cctaaacttt
    17161 gacttaaacc ataatcactt atcccataaa caattccaaa gttaactgct tttgcttgac
    17221 gacgcattaa actatcgact tgatcagctt ctacaccaaa tactttcata gcagttgctg
    17281 tatgaatatc atcgccgttg ataaatgctt ctttcatact ctcatcttgt gtaatgtgtg
    17341 ctaatacacg caattcaatt tgagaataat ctgctgataa tataacgcta tcttttgaag
    17401 ttggtttaaa ggcttttctt attttacgcc cttcttcaag tctaaccgga atattttgta
    17461 aattaggatc tacacttgat aaacgtccag tttgcgctaa agtttgatta aaacgtgtat
    17521 ggatacgttg atcatcacta attacctttt gcaatccttc aacataagta gactgtaact
    17581 tagataattg acgatattct aaaatataat caatgatagg atgttcacct tgcaattgct
    17641 ctaagacatc tacagcagta gaatatcctg ttttcgtctt tttaataaca ggtaattgta
    17701 atgtctcaaa caatacaaca cctaattgct taggagaatt tatattaaaa tcttcaccag
    17761 ctgcatcatg gatatttcga atcaagacgt ctaatttttc ttgaatttct ttttccattt
    17821 cttctaaatc atgaacatct gtaaatatac caatttcttc catttcactt aaaatcttag
    17881 ctagcggtag ctctaaatca gccaagagtt ctacctgatt gtattcttct aattgtttat
    17941 ccatatttgg tttcgcaaag taaattgcat cagtaataga agcaacatat ggatttaaaa
    18001 catcatcttc aggtacctta aatttcttac cttttccata tatactcaca tcgtctttca
    18061 caaaactttg accgtacaat gaaacaactg attgaacatc actaatcgta cgagatggat
    18121 caattatata actggccaac ataatatcga aagaaatatt ttgaatatca atccccaatc
    18181 tatgtgatgc tacatatgtt tttttagcat catatacgac ttttttcgaa ttcggatttt
    18241 ctaaccatga aactagttcg acataattat ttatgtcatc cgcattaatt acaatatgtt
    18301 tctcacctgt aaataaagag aattttaaaa tattatttcg caaatagtta ccaccgtcta
    18361 attcgaaatg gatggccgct tctttcaatg aagtaaaatc aatattatca aaagacgttt
    18421 caatttcaaa tgtcttttct attgcatctt caacgcttgc tgattgatca atgtcagcca
    18481 acaattgttt gaattctaac ttcttaaaca attcgatttt ttcttgttgt tcatcttgat
    18541 gagtcattaa cgtatcttca agttttactt caatcggact atctacatta atcgttgcta
    18601 attctttact cattaatgca tcttctttgc tattttgaag tttttctttt aactttttac
    18661 ctgaaatttc atctaaatgt tcatagacac cttctactgt gtcaaattgg tttagcaatt
    18721 ttattgctgt tttctctcca acacctgcaa cacctggtat attatcagaa gtatctccca
    18781 ttaatccttt catatcaata atttgattag gtgttaaccc gttgtatttt tccgcaataa
    18841 agtcaggtgt ataatgatca acatcagtaa cacctttttt agtgtaataa atggttacat
    18901 tatccgttgc aagttgtgtt aaatctcggt ctcccgtaat aataattgtc tgaaagcccg
    18961 ctttatctgc ttctttactt aaagttccga taatatcatc tgcctcatag ttatctaatt
    19021 cataacgttt aatatgataa gcatctaata attggcgaat ataaggaaat tgctcactta
    19081 gttcaggcgg cgttttctgg cgtccacctt tatattcact atatttttca tgtctgaaag
    19141 tcgttttacc tgcatcaaac gctactaaaa aatgatttgg cttttcttct tttaaaatct
    19201 tctctagtaa cattgcaaaa ccatatactg cattggtatg aatgcctgct ttgtttgata
    19261 acaaaggtaa tgcataaaaa gctctaaaac ttaagctatt accatcgatt aatactaatt
    19321 tattcacaat tttaacctcc agaactaatt tatatatatt ttagcatatt cgactgtgat
    19381 gtcgtaatta aagaaactat ctcatagagt atttatacac gacctaattt caaataaaac
    19441 aagtgcctat atagacttag ctaaaaaata aaaaagacat aatcatgatt gttcttgatg
    19501 agcactccat aaagtcaggt taaaagtcca acttttgaga tgcacattat catttcatga
    19561 ttatgtctac tttttaatat ttttatgctg ctattttaaa tttttatagg taagaataag
    19621 ttatgaatcg tctgaaccaa atggaatata tttaactttg gtcattttcg gtaattcttc
    19681 ataattatta aaccactctt ggtaattttt attgattggt gacggatgat gcatataatg
    19741 ttcaaacggc aatgattcca ctgtataaac ctcttgtcgt ggatgatctt taatttgttg
    19801 ttttaataac tgaactcttt tttcatgttc ataatgaaca taaat
//
LOCUS       DAMQWL010000042        19695 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.042, whole genome shotgun sequence.
ACCESSION   DAMQWL010000042 DAMQWL010000000
VERSION     DAMQWL010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 19695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19695
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.042"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(122..2098)
                     /gene="sfaD"
                     /locus_tag="PF788_001343"
                     /gene_synonym="sfnaD"
     CDS             complement(122..2098)
                     /gene="sfaD"
                     /locus_tag="PF788_001343"
                     /gene_synonym="sfnaD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ornithine--citrate ligase SfaD"
                     /protein_id="HDG6303608.1"
                     /translation="MNLNLIFKEQTLKFNKEEQETYLFLQQHNSDWANIFKEMILQGR
                     DKVTQRLVTSMHRENLVKARTQSKKILSRDLIMLDISTTHILEIQFPQAKQTLYAPIT
                     GEHAFDRIDVEGPFYIKDDITNTITRVHHPNEILECILIEAPDLKNAASDQFQQDLIN
                     SATNMTFAISYQALSMQHDSAPLFNIIENSEDSYLRSEQAVIEGHPLHPGAKLRKGLN
                     ALQTFLYSSEFNQPIKLKIVLIHSKLSRTMSLSKDYDTTVHQLFPDLIKQLENEFTPK
                     FNFNDYHIMIVHPWQLDDVLHSDYQAEVDKELIIEAKHTLDYYAGLSFRTLVPKYPAM
                     SPHIKLSTNVHITGEIRTLSEQTTHNGPLMTRILNDILEKDVIFKSYASTIIDEVAGI
                     HFYNEQDEADYQTERSEQLGTLFRKNIYQMIPQEVTPLIPSSLVATYPFNNESPIVTL
                     IKRYQSAASLSDFESSAKSWVETYSKALLGLVIPLVTKYGIALEAHLQNAIATFRKDG
                     LLDTMYIRDFEGLRIDKAQLNEMGYSTSHFHEKSRILTDSKTSVFNKAFYSTVQNHLG
                     ELILTISKASNDSNLERHMWYIVRDVLDNIFDQLVLSTHKSNQVNENRINEIKDTMFA
                     PFIDYKCVTTMRLEDEAHHYTYIKVNNPLYRENN"
     gene            2200..3393
                     /gene="sfaA"
                     /locus_tag="PF788_001344"
     CDS             2200..3393
                     /gene="sfaA"
                     /locus_tag="PF788_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin A export MFS transporter"
                     /protein_id="HDG6303609.1"
                     /translation="MTKYFFSSSFLLFLGNWIGQIGLNWFVLTTYHNAVYLGIVNFCR
                     LVPILLLSVWAGAIADKYDKGRLLRITISSSFLVTAILCVLTYSFTAIPISVIIIYAT
                     LRGILSAVETPLRQAILPDLSDKISTTQAVSFHSFIINICRSIGPAIAGVILAVYHAP
                     TTFLAQAICYFIAVLLCLPLHFKVTKIPEDASRYMPLKVIIDYFKLHMEGRQIFITSL
                     LIMATGFSYTTLLPVLTNKVFPGKSEIFGIAMTMCAIGGIIATLVLPKVLKYIGMVNM
                     YYLSSFLFGIALLGVVFHNIVIMFICITLIGLFSQWARTTNRVYFQNNVKDYERGKVL
                     SIIMMDRGMIPLGSLLMSICADVFGIVRTFSIMGISTICITMVFYFINRKLKLKLEES
                     NHGIS"
     gene            3380..5137
                     /gene="sfaB"
                     /locus_tag="PF788_001345"
     CDS             3380..5137
                     /gene="sfaB"
                     /locus_tag="PF788_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin A synthetase SfaB"
                     /protein_id="HDG6303610.1"
                     /translation="MVYLEWAKADRNIQYRVINAIIKERIYPEQTFISQKGSLIEIQY
                     HMHVLTIEVVRKSALERYEFTGDITYLNKGETSLIITLEGLLDVLNHDFDIPISERLR
                     EELIHSRDSLVETYKQMSHRQTLISQSFKFSRLPQDINFFSWLQHVKDSDKTDDLTYS
                     ESLVPEGHPTHPLTKTKLPLTMEEVRAYAPEFEKEIPLQIMMIEKDHVVCTAMDGNDQ
                     FIIDEIIPEYYNQIRVFLKSLGLKSEDYRAILVHPWQYDHTIGKYFEAWIAKKILIPT
                     PFTILSKATLSFRTMSLIDKPYHVKLPVDAQATSAVRTVSTVTTVDGPKLSYALQNML
                     NQYPGFKVAMEPFGEYANVDKDRARQLACIIRQKPEIDGKGATVVSASLVNKNPIDQK
                     VIVDSYLEWLNQGITKESITTFIERYAQALIPPLIAFIQNYGIALEAHMQNTVVNLGP
                     HFDIQFLVRDLGGSRIDLETLQHRVSDIKITNDSLIADSIDAVIAKFQHAVIQNQMAE
                     LIHHFNQYDCVEETELFNIVQQVVAHAINPTLPHANELKDILFGPTITVKALLNMRME
                     NKVKQYLNIELDNPIKKEV"
     gene            5144..6214
                     /gene="sfaC"
                     /locus_tag="PF788_001346"
     CDS             5144..6214
                     /gene="sfaC"
                     /locus_tag="PF788_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin A biosynthesis protein SfaC"
                     /protein_id="HDG6303611.1"
                     /translation="MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIAGDRTIVE
                     SLKALGINHVAESRLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIH
                     QINEVAEVLGKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCF
                     KSDAPSDDDIFMINRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGET
                     LFRGVDTTTNQAIAMLYQDAITLEAEILEIKPRVNTQTHESFLQAIVDIGYLDTKVDN
                     ISPMDQHINILGASSDHLMLDLNGQGHYQVGDHISFSLNYEALSHSMYMKNLHKVYID
                     DSKIDTLLQNFDVKSPAMVNHY"
     gene            complement(6315..6440)
                     /locus_tag="PF788_001347"
     CDS             complement(6315..6440)
                     /locus_tag="PF788_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303612.1"
                     /translation="MYHCYIIFALIQLTPFSMTVIPVIQLILSVAILCDELLHLI"
     gene            6606..7589
                     /locus_tag="PF788_001348"
     CDS             6606..7589
                     /locus_tag="PF788_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDG6303613.1"
                     /translation="MRGLKTFSILGLIVALLLVAACGNTDNSSKKESSTKDTISVKDE
                     NGTVKVPKDAKRIVVLEYSFADALAALDVKPVGIADDGKKKRIIKPVREKIGDYTSVG
                     TRKQPNLEEISKLKPDLIIADSSRHKGINKELNKIAPTLSLKSFDGDYKQNINSFKTI
                     AKALNKEKEGEKRLAEHDKLINKYKDEIKFDRNQKVLPAVVAKAGLLAHPNYSYVGQF
                     LNELGFKNALSDDVTKGLSKYLKGPYLQLDTEHLADLNPERMIIMTDHAKKDSAEFKK
                     LQEDATWKKLNAVKNNRVDIVDRDVWARSRGLISSEEMAKELVELSKKEQK"
     gene            7601..8632
                     /locus_tag="PF788_001349"
     CDS             7601..8632
                     /locus_tag="PF788_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDG6303614.1"
                     /translation="MAIKEISSQSAIDHKRKRRTTLTYIVSLCFLFICIYLNMAIGSS
                     KINFSDIIHYVTGHTDTKATFLLHNVRMPRMIAGLFIGGALAVSGLLMQAMTRNPLAS
                     PKIFGVSSGASFFIVFVTIIIPALEYYALYLGVIGAFIGGLTVYTLSGATKGMTPIKL
                     ALAGMAIHLFFSSMTEGIIILNENSNEQVMFWLVGSLSSMKWDEILTILPWIIGALIV
                     TIFIGRQLTIMELGDDIAKGLGQNINKVRIIIGLLVIILTGMSVSVAGPIGFVGLIVP
                     HIVKRYVSKNYLVMIPLTFIIGADLLLLSDVLSRLITYPYESPVGIVTSFVGALYFLF
                     ITIKGVKRI"
     gene            8629..9597
                     /locus_tag="PF788_001350"
     CDS             8629..9597
                     /locus_tag="PF788_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDG6303615.1"
                     /translation="MMTTKIIRRYSLITILLIVSIFISLCVGSVMIHPIDAIKGIFTQ
                     DDFILNEYRIPRTLLGIIIGSSLAISGAIIQAVIRNPLASPDVIGISKGASLAAVIII
                     MTFPTAPLFVLPIGSFLGAFAVSLFLSFLISKYDVKGSKLALIGLAIGAICTAIVQFL
                     LIRNPLEANKALVWLTGSLYGHDMSNIYTILPWFLITIPIIILLSYQLDVLNLGDAVA
                     TALGLKVKTIKMLLLILAVILAGSAISVVGGISFLGLIAPHIARQLIGNKTLHVIIMS
                     GLIGAILLTFGDGLARGIHPPLDIPVGVIIAIIGAPYFLILLRRMK"
     gene            9833..11203
                     /locus_tag="PF788_001351"
     CDS             9833..11203
                     /locus_tag="PF788_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001670170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiH family protein"
                     /protein_id="HDG6303616.1"
                     /translation="MDSFSRKEIVIGRLKFITMSLIGILLFLVPIPVEQDGQKQTTLP
                     VAFLAGVLKDVLGGVMPFLIVTIITLSGIITLICSTILKDKLKPDGLMNNAFNVRIGW
                     LILRILAVVFAWMTFLRIGSKVIYSDETGGLLFSSLLPTLVAVFLFAALFLPLLMEYG
                     LLEMLGPIFRPVMRPLFTLPGRSTVDNLASFIGDGTVGVLITSRQYGEGYYSRREATV
                     ISTTFSVVSITFAIVVAETVHMQNQFFAFYLSVIVSCLVAAVIMPRIWPLNKIPDEYA
                     KEVPESARTEALPEGKTALRHGFDTATEVGIKAPGVIDFFKSGLKTVIDMWFVILPVV
                     MSIGTIATIIANYTPFFVILGKPFVPFLELMQIPEAAQASQTIIIGFADMFLPSILIE
                     GVQNDITRFVIGALSISQLIYLSEVGGVILGSKIPVSIGKLFMIFLIRTIITLPIISL
                     MAHLLL"
     gene            complement(11335..11595)
                     /locus_tag="PF788_001352"
     CDS             complement(11335..11595)
                     /locus_tag="PF788_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303617.1"
                     /translation="MAMTVKKDNNEVRIQWRVADIKIPTSEIKNITQDQDIHAVPKLD
                     SKDVSRIGSTFGKTNRVIIDTEDHEYIIYTQNDQKVYNELTK"
     gene            11772..12287
                     /locus_tag="PF788_001353"
     CDS             11772..12287
                     /locus_tag="PF788_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDG6303618.1"
                     /translation="MTGKTHASCGMLVGALTTQYFQTDIFSSVTVIILATLASLLPDI
                     CHTQSKIGRRFKVISFFVRLIFGHRTFTHSILFIAIIAFLLQIIQTPNYYMAAIIIGL
                     VSHVILDMITPKGVKLFYPLPFNVKTPIQFKTGGLVDLSLATALMVGTVYVLFQPFIN
                     DIISNWNTKFL"
     gene            12331..13518
                     /locus_tag="PF788_001354"
     CDS             12331..13518
                     /locus_tag="PF788_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDPGP type 1 family protein"
                     /protein_id="HDG6303619.1"
                     /translation="MLDKNQLAKYKQDHLCEYEKIMSNNEKEALEEKVASLDLDFIAK
                     LYNDLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGG
                     QGTRLGYKGPKGSFEIEGVSLFELQANQLKTLNHQSGHTIQWYIMTSDINHEETLAYF
                     EAHSYFGYDQEAIHFFKQDNIVALSEEGKLILNQQGRIMETPNGNGGVFKSLDKAGYL
                     EEMSNNGVKYIFLNNIDNVLVRVLDPLFAGFTVEHDYDITSKTIQPKPGESVGRLVNV
                     DCKDTVLEYSELDPEVANQFNNANIGIHAFKLGFILNAVNRELPYHLAIKNLKQLDEN
                     FGVIEQPTLKFELFYFDIFTYGTSFVTLQVPREEEFSPLKNKEGKDSVATATEDLRRM
                     GLI"
     gene            13537..14220
                     /locus_tag="PF788_001355"
     CDS             13537..14220
                     /locus_tag="PF788_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HDG6303620.1"
                     /translation="MSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLV
                     LPYAAVHSYIAHGTLASVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMI
                     YVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMG
                     WVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLL
                     HLIAILYFM"
     gene            14397..15740
                     /locus_tag="PF788_001356"
     CDS             14397..15740
                     /locus_tag="PF788_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6303621.1"
                     /translation="MRLKSIITVIALILIMFMSAIESSIISLALPTIKQDLNAGNLIS
                     LIFTAYFIALVIANPIVGELLSRFKIIYVAIAGLLLFSIGSFMCGLSTNFTMLIISRV
                     IQGFGSGVLMSLSQIVPKLAFEIPLRYKIMGIVGSVWGISSIIGPLLGGGILEFATWH
                     WLFYINIPIAIIAIILVIWTFHFPEEETVAKSKFDTKGLTLFYVFIGLIMFALLNQQL
                     LLLNFLSFILAIVVAMCLFKVEKHVSSPFLPVVEFNRSITLVFITDLLTAICLMGFNL
                     YIPVYLQEQLGLSPLQSGLVIFPLSVAWITLNFNLHRIEAKLSRKVIYLLSFTLLLVS
                     SIIISFGIKLPVLIAFVLILAGLSFGYIYTKDSVIVQEETSPLQMKKMMSFYGLTKNL
                     GASIGSTIMGYLYAIQSGIFGPNLHNVLSAVAVISIGLIVLWVVFFKEQSSQSKE"
     gene            15839..16312
                     /gene="sepA"
                     /locus_tag="PF788_001357"
     CDS             15839..16312
                     /gene="sepA"
                     /locus_tag="PF788_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter SepA"
                     /protein_id="HDG6303622.1"
                     /translation="MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRI
                     LIYFRLGDFTYNRSMYDNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATF
                     HLISYTVATTLFYFIIHLNYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK"
     gene            16634..18076
                     /gene="lmrS"
                     /locus_tag="PF788_001358"
     CDS             16634..18076
                     /gene="lmrS"
                     /locus_tag="PF788_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter LmrS"
                     /protein_id="HDG6303623.1"
                     /translation="MAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELN
                     INESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRPLYLAAMGTFLLGSIVAALAPNFG
                     VLMLARVIQAMGAGVLMPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTATGLI
                     IDQASWRVPFIIILGIAILAFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAF
                     SSAGDLGFTSPIVIGALILSMVIIYLFIRRQFNITNALLNLRVFKNRTFALCTISSMI
                     IMMSMVGPALLIPLYVQNSLSLSALLSGLVIMPGAIINGIMSVFTGKFYDKYGPRPLI
                     YTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLRNEEIS
                     HGTAIMNFGRVMAGSLGTALMVTLMSFGAKIFLSTSPSHLTATEIKQQSIAIGVDISF
                     AFVAVLVMAAYVIALFIREPKEIESNRRKF"
     gene            18224..19288
                     /locus_tag="PF788_001359"
     CDS             18224..19288
                     /locus_tag="PF788_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017804887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HDG6303624.1"
                     /translation="MLTVDQVKELVGEIKDPIIDVPLKETEGIVEVSIKEEKEHVSVK
                     LAMAQLGGAPQLDLQMAVVNALKENGAKTVGIRFETLPEEKVNQFKPKEENKPKTIEG
                     LLSQNNPVEFIAIASGKGGVGKSTVAVNLAVALAREGKKVGLVDADIYGFSVPDMMGI
                     DEKPGIKGKEVIPVERHGVKVISMAFFVEENAPVIWRGPMLGKMLTNFFTEVKWGDIE
                     YLILDLPPGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGAMAKHTDHSILGVI
                     ENMSYFESKETGNKEYVFGKGGGTKLADELNTQLLGELPLEQPSWNPKDFAPSIYQSD
                     DRLGKIYSSIAQKVIAATNK"
     gene            19377..19562
                     /locus_tag="PF788_001360"
     CDS             19377..19562
                     /locus_tag="PF788_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303625.1"
                     /translation="MLSNKRVEKEAGCEHKKFLKKLLTLNSKVDNMIKSSKTTQLFLK
                     KNFKSVKLTIEITIKTI"
BASE COUNT         6523 a         2678 c         3611 g         6883 t
ORIGIN      
        1 cctgtttttt gtgattttta ataatttgaa tatggaaaat gtattattct ctcatttgta
       61 tagattgtat ttaataagtt aatgtaatcc ttgagctcac gattaataaa attctataac
      121 cttaattatt ttctcgatac aaagggttat taactttaat ataagtataa tgatgtgcct
      181 catcttcaag acgcattgtt gtaacacact tataatctat aaatggcgcg aacatggtat
      241 ctttaatttc atttatgcga ttctcattta cttgattaga tttgtgtgtc gaaagtacaa
      301 gttgatcaaa aatgttatct agtacatcac gaacgatata ccacatatgt ctttctaagt
      361 ttgaatcatt tgatgcttta gagattgtaa gaattaattc gcctaaatgg ttttgaacgg
      421 tagaataaaa ggctttgtta aacacagacg tttttgaatc agtaagaatt cttgattttt
      481 catggaaatg agatgtactg tatcccattt catttagttg tgctttatca attcttaaac
      541 cttcaaagtc tctaatatac atcgtgtcca atagaccatc tttccgaaat gttgcaatag
      601 cattttgcaa gtgagcctct aatgcaatgc catatttagt aactagtggg attacgagac
      661 caagcaatgc tttactataa gtttcaaccc acgatttcgc cgatgattca aaatcagaca
      721 atgatgcagc tgattgataa cgtttaatca atgtcacgat aggtgattca ttgttaaatg
      781 ggtaggttgc aactaagctt gaaggaatca atggtgtgac ttcttgtgga atcatttggt
      841 atatattttt tctaaataat gtacctaatt gttcacttcg ttcagtttga tagtctgctt
      901 cgtcttgctc attataaaaa tgaataccag caacttcatc aataattgtt gatgcatagg
      961 acttaaatat gacatctttc tccaaaatat catttaaaat acgtgtcatt agtggaccat
     1021 tgtgcgtcgt ttgttctgat aatgtacgaa tctcacctgt aatatgaacg tttgtcgaca
     1081 atttgatgtg tggcgacata gctgggtatt taggaactaa tgttctgaaa gataaaccag
     1141 cataataatc caacgtatgt tttgcttcaa tgattaattc tttatctact tctgcttgat
     1201 aatcagaatg taatacgtca tctaattgcc atggatgaac aatcataatg tgataatcat
     1261 taaagttaaa ctttggcgta aattcatttt ctaattgttt aattaagtcc ggaaatagtt
     1321 gatgaacagt tgtatcataa tctttagaca gtgacatagt acggcttaat ttactgtgaa
     1381 tcagtactat tttcaactta ataggttgat tgaattctga agaatatagg aatgtttgta
     1441 atgcatttaa acctttacgt aatttagccc caggatgtag cggatgacct tcaataacgg
     1501 cttgctctga acgcaagtaa ctatcttcgc tattttcgat aatattaaat aaaggtgcag
     1561 aatcatgttg cattgacagt gcttgatagc taattgcaaa tgtcatatta gttgcactgt
     1621 ttattaaatc ttgctgaaat tgatcactag cagcattttt taaatctggt gcttcaatta
     1681 aaatacactc aagaatttca tttggatggt gtactcgtgt aatcgtattt gtaatgtcat
     1741 ctttaatgta gaaagggcct tcaacatcaa ttcgatcaaa ggcgtgttct ccagtgatag
     1801 gagcatataa tgtttgctta gcttgtggga actggatttc tagtatatga gtcgttgaga
     1861 tatctaacat aatcaaatca cgactcaata ttttcttact ttgagtgcgc gctttaacta
     1921 agttttcgcg atgcattgat gtgaccaatc tctgagtgac tttatctctt ccttgtaaaa
     1981 tcatctcttt aaaaatatta gcccaatcgc tattatgttg ttgtaaaaat aaatatgttt
     2041 cttgttcttc tttgttaaat tttaatgtct gttctttaaa aattaagttc aagttcataa
     2101 ttcacctcta tgaaatattt tacaaaagca agatagattt gtataatcca tattaatgat
     2161 aatgattctt attatcaaca gaatgcgggt gtaagtttta tgacaaaata tttttttagc
     2221 agttcttttc tactatttct aggtaattgg attggacaaa tagggctaaa ttggtttgta
     2281 cttaccactt atcataacgc agtttatctg gggattgtca atttttgcag acttgtacca
     2341 atattattac taagtgtgtg ggcaggggca attgccgata aatatgataa agggcgattg
     2401 ctgagaatta caatttcatc atcattttta gtaactgcaa ttttatgtgt gctcacgtat
     2461 agtttcactg caattccaat tagcgtcatt attatatatg cgacattaag agggatttta
     2521 agtgcggttg aaacaccttt aagacaagca atcttaccag atttatcaga taaaatatct
     2581 actacacaag ctgtatcatt tcattcattc atcattaata tttgtcgttc aatagggcct
     2641 gccattgctg gtgtcatatt agcagtctat catgcgccaa caacatttct tgcacaggca
     2701 atttgttatt ttatcgcagt tttattatgc ttaccattac attttaaagt aactaaaata
     2761 cctgaagatg catcaagata catgccgtta aaagttatta tagattactt caaattacat
     2821 atggaaggtc gacaaatatt tataacatca ttattgatta tggcgacagg tttttcatat
     2881 acgacacttt taccagtttt gacaaacaaa gtatttccgg ggaaatctga aatatttggt
     2941 atcgctatga cgatgtgtgc cattggtggt attattgcaa cgctagtttt acctaaagta
     3001 cttaaatata ttggtatggt aaatatgtat tatttaagtt catttttatt tggcattgct
     3061 ttgttaggtg tggtatttca caatattgtc atcatgttca tttgtattac attgattggg
     3121 ttatttagtc aatgggcacg tacgacaaat cgcgtttatt ttcaaaataa tgttaaagat
     3181 tatgaacgtg gtaaagtact gagtattatt atgatggata gaggtatgat tccattggga
     3241 agtctattaa tgagtatatg tgcagatgtg tttggcattg ttagaacttt ttcaataatg
     3301 ggaataagta ctatatgcat tacaatggta ttctatttta taaatagaaa gttgaagtta
     3361 aagttggagg aaagtaatca tggtatatct tgaatgggca aaggcagata gaaatattca
     3421 atatcgtgta attaacgcca ttattaaaga acgtatttac cccgagcaaa catttatttc
     3481 gcaaaaagga tctttaattg aaattcagta tcatatgcat gtgttgacta ttgaagttgt
     3541 tagaaaaagt gcattagaac gctatgagtt tacaggtgat attacttatt taaataaagg
     3601 tgaaacgtca ttaattataa ctttagaagg tttattagat gtgttgaatc atgactttga
     3661 tatccctatt tcagagcgac tacgcgaaga gttaatacac agtcgagata gtttagttga
     3721 aacatataag caaatgtctc acagacaaac gttaataagt caaagtttta aattttcaag
     3781 gttaccacaa gatattaact ttttttcatg gttacaacat gtaaaagata gtgataagac
     3841 agatgattta acttattctg agagtttggt accagagggg catccaacac accctttaac
     3901 caaaacgaaa ttgcccttaa ctatggaaga agtacgagca tatgcacctg agtttgaaaa
     3961 agaaatccct ttgcaaatta tgatgattga aaaagaccat gttgtgtgca cagctatgga
     4021 tggtaatgat caatttatta ttgatgaaat aattcccgaa tactacaatc agattcgtgt
     4081 gtttttaaag agtttaggtt tgaaaagtga agactataga gcgattttag tacatccttg
     4141 gcaatatgat catacgatag ggaaatattt tgaagcatgg attgctaaaa aaatattaat
     4201 tccaacgccg tttacaatac tttcaaaagc aactttatca tttaggacga tgtctttaat
     4261 tgataaacca taccatgtta agttgcccgt cgatgcacaa gcaacaagtg ccgttagaac
     4321 agtctcaact gtgactactg tagatggacc aaagttaagt tatgctttac aaaacatgtt
     4381 gaatcaatat ccaggattta aagttgctat ggaaccgttc ggtgaatatg caaatgttga
     4441 taaagatagg gcacgtcagc ttgcttgtat tataagacaa aagcctgaaa ttgatggaaa
     4501 aggtgcaaca gtagttagtg caagtctagt taataaaaat ccaatagatc aaaaagttat
     4561 cgtggatagt tacttagagt ggttaaatca aggaattact aaagaaagta ttacgacatt
     4621 tattgaacga tacgctcaag cattaatccc gcctttaatt gcttttattc aaaattatgg
     4681 aattgcttta gaagcacaca tgcaaaatac agtagtgaac ttggggccac attttgacat
     4741 tcaattttta gtgagagatt taggtggttc tagaattgat ttagaaacat tacaacatcg
     4801 tgtatcagat attaaaatta caaatgatag tttaatagct gattctatag atgcagtgat
     4861 tgcaaaattc caacatgctg ttattcaaaa tcaaatggca gaattaatcc atcattttaa
     4921 tcagtatgat tgtgttgaag aaaccgaatt atttaacata gtacagcaag tagtagcgca
     4981 tgccattaac ccaacactac cacatgcaaa tgagttaaaa gatattttgt ttggaccaac
     5041 aattactgtc aaagcgttgt taaatatgag aatggaaaat aaagtaaagc aatatttaaa
     5101 tattgagtta gataatccga taaaaaaaga ggtgtagtac tacatggcac acgttaacat
     5161 aaatatatcg aagattaaat ataacgccaa agtacttcaa acagtttttc aaagtaaaaa
     5221 tatgcaattc acaccagtaa ttaagtgcat agctggtgac cgtacaattg tagaaagctt
     5281 aaaagcgtta ggtatcaatc atgttgcaga atccagattg gataacataa ttagtattgc
     5341 agatcaggat ttaacatata cgttattgcg tacgcctgcc aaaaaagaga tttcagatat
     5401 gatagaaaaa gttgatatga gtatccaaac agaattatct accatacatc aaataaatga
     5461 agtagcagaa gttttaggaa aaaaacataa gattttatta atggtagatt ggaaagatgg
     5521 ccgtgaaggt gttctgactt atgatgtttt agattatatt aaagagatta ttcacttgaa
     5581 aaatatccat tttgtaggtt tagcattcaa ttttatgtgt tttaaatctg atgcgccaag
     5641 tgatgatgat atctttatga ttaatcgatt cgtctcagct gttgaaagag aaataggata
     5701 tcgattgaaa attatttcag gtggtaattc gagcatgtta ccacaacttt tatataatga
     5761 tttgggtaaa ataaatgaat tgcgaatagg tgaaacgttg tttagaggtg ttgatacaac
     5821 gacaaatcaa gcgatcgcta tgttatatca agatgcgatt acattggagg ctgagatttt
     5881 agaaattaaa cctcgagtta atacacaaac gcatgaatca ttcttacaag ctattgtaga
     5941 tattggttat ttagatacaa aagtcgataa tatttcacct atggatcagc atatcaatat
     6001 tttaggcgct tcgagtgatc atttaatgct tgatttaaat ggtcaaggac actatcaagt
     6061 tggagatcat atatcttttt cattaaatta tgaagcactt tctcattcga tgtatatgaa
     6121 aaatttacat aaggtatata ttgatgattc aaagattgat acgctacttc aaaattttga
     6181 tgtgaaatct cctgctatgg taaaccacta ttaatatatt tatcaataag tctaagttga
     6241 caagttatac tacatatcgt ttgcacggtt gtatcataat tgttcaactt agattttttg
     6301 tatttgttga tttatcaaat taagtgcaac agttcgtcac ataaaattgc aacagataat
     6361 atcagctgaa ttacagggat aacggtcatg ctaaatggtg tcaattgtat taatgcaaag
     6421 atgatatagc aatgatacat tatcagtatt ttgtctaagg aaatgtgcta attgtagtca
     6481 taattattag aggaaatata tagtcataca ttttagaaat acaaaaaaga ttgaacgcta
     6541 cttgacaatg ataattgtta tcaataaaat aataaatgaa gttatacata ttaaggagtg
     6601 gaacgatgag aggtctaaaa acttttagta tattgggatt aatagttgcc ttacttttag
     6661 ttgcagcttg tggtaatacg gataattcaa gtaaaaaaga atcatcaact aaagatacta
     6721 tttcggtaaa agatgaaaat ggtacagtaa aagtacctaa agatgcaaaa cgtatcgttg
     6781 tattagagta ctcatttgca gatgcattag cagcattaga cgttaaacca gttggtattg
     6841 ctgatgatgg taagaaaaaa cgtatcatta aaccagttag agaaaaaatt ggggattata
     6901 cttctgtagg tacacgtaaa cagccaaact tagaagaaat tagtaaatta aaaccggatt
     6961 taattatcgc tgatagcagt agacataaag gtattaataa agaattaaac aaaattgcac
     7021 caacattatc attaaagagt tttgatggag actacaaaca aaatattaat tcgttcaaaa
     7081 caattgctaa agctttaaat aaagaaaaag aaggcgaaaa acgtcttgct gagcatgata
     7141 aattaatcaa taagtataaa gatgaaatta aatttgatag aaatcaaaaa gtgcttccag
     7201 cagtagttgc taaagctggt ttattagcac atccaaacta ttcatatgtt ggacaatttt
     7261 taaacgaact aggatttaaa aatgcattaa gtgacgatgt aacaaaaggt ttaagtaaat
     7321 atttgaaagg accttactta caattagaca ctgaacattt agctgattta aatccagagc
     7381 gtatgatcat tatgacagat catgctaaaa aagattctgc tgaattcaag aagttacaag
     7441 aagatgcaac atggaaaaag ttgaatgcag ttaaaaataa tcgcgtggat attgttgacc
     7501 gtgatgtttg ggcaagatct cgtggcttaa tttcttctga agaaatggct aaagaacttg
     7561 ttgaattatc aaaaaaagaa caaaagtaag gtggaagtaa atggctataa aagaaataag
     7621 tagccaatct gccatagatc ataaaagaaa aagacgcaca acactcacgt atatagtgag
     7681 tttgtgcttt ctttttattt gtatatattt aaatatggcg attggttctt cgaaaattaa
     7741 ttttagcgat atcattcact atgttactgg tcatacagat acgaaagcaa cgtttttatt
     7801 gcataatgta cgtatgccaa ggatgattgc agggttattt attggcggtg cattagcggt
     7861 atctggtttg ttaatgcaag caatgacacg caatccgcta gcatcaccta aaatttttgg
     7921 tgtcagttct ggtgcatcgt ttttcattgt atttgtgacg attatcattc cagcattaga
     7981 atattatgca ttatatttag gtgtgatagg tgcatttata ggtggtttaa ctgtttatac
     8041 actttcaggt gctacgaaag gtatgacacc cattaaatta gcattggctg gtatggccat
     8101 ccatttgttt tttagtagta tgaccgaagg tattattatt ttgaatgaga attcaaacga
     8161 acaagtgatg ttttggcttg tcggttcatt atccagtatg aagtgggatg aaattttaac
     8221 cattctacca tggattattg gtgctttaat tgtaacgatt tttattggac gtcaactaac
     8281 gataatggaa ctaggcgatg acattgctaa gggattgggt caaaatataa ataaagttag
     8341 aattatcatt ggactattag tcattattct tacaggtatg tcggtgtcag tggcaggacc
     8401 aattggattt gttggcttaa tcgtaccgca tatagtcaaa cgctatgtga gtaagaatta
     8461 tttagtcatg attccattaa catttattat aggtgcagat ttgttactac tatcagatgt
     8521 attaagtcgt ttaattacat atccttatga atcaccagta gggattgtta catcattcgt
     8581 aggtgcactt tacttcttat ttataacgat taaaggggtg aaaagaatat gatgacaacg
     8641 aaaattatac gtcgttatag tttaatcaca atccttttaa ttgtgagtat attcataagt
     8701 ttatgtgtag ggtctgtcat gattcatccg attgatgcta ttaagggaat ctttacacaa
     8761 gatgatttta ttttaaatga gtatcgtata cctagaacat tacttggtat tattatcggt
     8821 agtagcttgg ctatttcagg tgcaattata caagctgtaa taagaaaccc gttagcctca
     8881 cctgatgtta taggtatttc taaaggtgcc agtttagctg ctgtgattat tattatgacc
     8941 tttccaacag caccattgtt tgtattacct ataggttcat tcttaggtgc ctttgcagta
     9001 agtttatttt tatcattttt aatttcaaaa tatgatgtta aaggttcaaa gcttgcctta
     9061 attggtttag caataggcgc aatatgtacg gcgattgtgc agttcttatt aatcagaaat
     9121 ccactggaag caaacaaagc gcttgtttgg ttgacaggta gtctatatgg acatgatatg
     9181 tcgaatattt atactatatt accttggttt ttaataacga taccaatcat cattttattg
     9241 agttatcaat tagatgtatt gaatctaggt gatgctgttg caaccgcact cggtttaaaa
     9301 gttaaaacta ttaaaatgct attgttaatt ttagcagtaa tattagcagg atccgcaatt
     9361 tcagttgtcg gtggtattag ctttttagga ttaattgcac ctcatattgc gagacaatta
     9421 ataggaaata aaacattaca cgttattatc atgtcggggt taattggtgc tatattgtta
     9481 acatttggag atggtttagc ccgtggcatt catccgccac tggatattcc tgttggggtt
     9541 atcattgcaa ttatcggtgc accatacttc ttaatattat tacgaagaat gaaataacta
     9601 acatatgatt agagtttaaa aaaggttaag tacgaaatca gtaattgtac ttaacctttt
     9661 ttgaattcat cttgaaaaat tacaagaaat agcgtatatt taataactgt aattattcat
     9721 tattttgcat acataaacat tttgaaagat agaatgataa ggaatatgtt tgttaactga
     9781 atagaattct gtatatactt aaaacgaata catagagaaa tggattgatt ttatggatag
     9841 cttttcaagg aaagagatag ttattgggag acttaagttt attacgatgt ctttaattgg
     9901 tatcttatta tttttagtac caattccagt cgaacaagat ggacagaagc aaacaacgtt
     9961 gcccgtggca tttttagcag gcgtgcttaa agatgtatta ggtggcgtaa tgccattttt
    10021 aattgtgacg ataattactt tatcgggtat cataactctg atttgttcaa ctattttaaa
    10081 agataaattg aaacctgacg ggctaatgaa caatgctttt aacgttagaa ttggttggtt
    10141 aattttacga atattagcag ttgtttttgc atggatgaca tttttacgaa ttggttcaaa
    10201 ggttatttac tcagatgaaa cgggtggatt attgttctca agtttattgc caacattagt
    10261 ggcagtattc ttatttgcag ctctattttt accgctatta atggaatacg gtttgttaga
    10321 gatgttgggt cctattttta gaccggttat gagaccttta tttacattgc caggacgttc
    10381 gacggtagat aatttagcat catttattgg agacggaact gttggtgtct taattacaag
    10441 tagacaatat ggtgaaggat attattctcg tcgtgaggca acagttattt caacgacatt
    10501 tagtgtagtt tctatcacct ttgcaattgt agttgctgaa acagtgcaca tgcaaaatca
    10561 attttttgct ttctatttat cagtgatagt atcctgcctc gttgcagcag tcattatgcc
    10621 aagaatttgg cctttaaata aaattcctga tgagtatgct aaggaggtac ctgaaagtgc
    10681 gcgtactgag gcattgccag aaggaaagac ggcattgaga catggctttg atactgcaac
    10741 agaagtaggt attaaagcac cgggcgttat tgactttttt aagtcaggat taaaaacagt
    10801 cattgatatg tggtttgtta ttttgcctgt agtaatgagt attggtacta ttgctaccat
    10861 tattgcgaac tacacgccct tttttgtcat attgggtaaa ccttttgttc catttttaga
    10921 gttaatgcaa atacctgaag cggcacaggc ttctcaaacg attattatcg gttttgccga
    10981 tatgttttta ccttctatat taattgaagg tgtacaaaat gatataactc gttttgttat
    11041 tggggcactt agtatatcgc agttaatata cttgtctgaa gtaggtggcg tcatacttgg
    11101 ttcgaagatt cctgtaagca tcggcaaatt gtttatgatt ttcttgatta gaacaatcat
    11161 tacactacca attatttctt tgatggcaca tcttttgtta taaatatatg tgaaaaagga
    11221 caactgttaa aattatggga acagttgtcc ttttgtattt gtttatgctg ggtgttgaat
    11281 caattaaaaa aatcattcat gaagccctca ccatgaatga tttttttata caatttattt
    11341 agttaattca ttgtaaactt tttgatcatt ttgagtataa ataatgtatt cgtggtcttc
    11401 agtatcgata ataacgcgat tcgttttacc aaacgttgag ccgattctag atacatcttt
    11461 gctgtctaat ttaggaactg catgaatatc ttggtcttgt gtaatatttt taatttcact
    11521 tgtaggaatt ttgatatcag caactctcca ttgaatacgc acttcattat tatccttttt
    11581 tactgtcatt gccattattc aaacacatcc tttaaatatt ttgtaaatac atcataaacg
    11641 attttgtaat cgttttcaag agttatgtga tactttttta aattgtgtca tactaatgaa
    11701 ttttaacccg aaaatatgtt cgtgtttttg ttagggatgt ggtaaaatgt gagtattaaa
    11761 ggagaacaaa tatgacaggt aaaacacatg cttcatgcgg catgctcgtt ggagcgctaa
    11821 caacacaata ttttcaaacg gatatttttt cgtcggttac ggttatcatt ctagcaactc
    11881 tagctagctt attacccgat atatgtcaca ctcaaagtaa gattggcaga aggtttaagg
    11941 taattagttt ttttgtgaga ttgatctttg gacatcgaac ctttacgcat tcaatattat
    12001 ttatcgcaat catagcattt ttattgcaaa ttattcagac gcctaattat tatatggcag
    12061 caattataat tggattagtg tcacatgtta tactagatat gataacacca aaaggcgtga
    12121 aattatttta tccgttaccg tttaatgtga agacaccgat tcaatttaaa acaggtggac
    12181 ttgtagactt atctttagct acagcgttaa tggtcggaac agtttatgtt ttatttcagc
    12241 ctttcatcaa tgatataata agcaactgga atactaagtt tttatagaaa ataaattatt
    12301 aaaggttaca aactcagcag gaggcataaa atgctagata aaaatcaatt agctaaatat
    12361 aaacaagatc atttgtgtga atatgaaaaa ataatgagta acaatgaaaa agaagcactt
    12421 gaagagaagg tagcgtcatt agatttagat tttattgcca aattatataa cgatttatac
    12481 atcaataaga aaacaataga tgatgtatct gcagtttctg aagtgaaata tgatattaaa
    12541 tcacaaatga gtgatgatga gattaagcgt ttagaggaac aaggacttca agctattaaa
    12601 gaaggacaat ttgcagtact tttgatggca ggtggtcaag gaacaagact tggttacaag
    12661 ggccctaaag gttcgtttga aattgaaggt gtaagtttat ttgaacttca agctaaccaa
    12721 ttaaaaacat tgaatcatca atctggacat acgattcaat ggtatattat gacaagtgat
    12781 atcaatcatg aagaaacttt agcttatttc gaagcacata gttattttgg atatgatcaa
    12841 gaagcaatcc atttctttaa acaagataat attgtggcgc ttagtgaaga agggaagtta
    12901 attttaaatc aacagggtcg tattatggaa acgccgaatg gtaatggtgg cgtgtttaaa
    12961 tctttagaca aggcaggata cttagaagaa atgtctaata atggcgttaa gtatattttc
    13021 ttgaataata tcgacaatgt tttagtaaga gtgttggatc cactatttgc aggatttacg
    13081 gtagaacatg attacgatat tacttctaaa acgattcaac caaaaccagg agaaagtgtt
    13141 ggacgtttag ttaatgtcga ttgtaaagat acagtactgg agtattcaga attagatcca
    13201 gaagttgcaa atcaatttaa caatgctaat atcggtattc atgcatttaa acttggtttt
    13261 attttaaacg ctgtaaatcg tgagttacct tatcatttag ctattaagaa tttgaagcaa
    13321 ttagatgaga actttggtgt tattgaacaa ccaactttaa aattcgaatt gttctatttt
    13381 gacatattta cttatggaac tagttttgtc acgttacaag ttcctagaga agaagaattt
    13441 tcacctctta aaaataaaga aggtaaagat agtgttgcaa ctgcaacaga agatttacgt
    13501 agaatgggtt taatttaatg ataggcggtg actatgatgt ccaaatcaac taaaaaaagt
    13561 aatgacacaa tcgtagaaac atttaaggat atcatccctt tatcatttgg agaagaaatt
    13621 ggtaatgcgg catctcatgg tgttgcagct ttgttaacat tattagtgtt accctatgcg
    13681 gctgtgcaca gttatattgc acatggtacg cttgcgtctg tgagtatgtc tatttatgtt
    13741 atttctatct ttatgatgtt tatttcatct actatttatc attctatgca aaatgaaaca
    13801 cctcataaat atattttaag gattatcgat cacagtatga tttacgtagc aatttctggt
    13861 acatatacgc ctattttgtt aacagttgta ggtggttgga taggttggac agtatttatt
    13921 ttattatggg gaacgacact ttgggggatt ttatataaat ccatagctgt caaagttaac
    13981 caaaagttaa gcttaattgt ctatttagtg atgggctggg taggtattat cttgttacca
    14041 attattttta ttcgcacatc atggatattc atattattca ttttcttagg tggtgtgtct
    14101 tatacaattg gtgcatggtt ttatgcacaa aagaatagac catattttca tatgatttgg
    14161 catattttta ttgtaatagc atcactattg catttaattg caatcttata ttttatgtag
    14221 tcgtttagaa aagctggggg aaactccgct ttttttatta cataaatcat tctaataggg
    14281 gattgtattg taatagaatt atcgttaaga tttgaaagtc aaaagtgttt atacatatga
    14341 aaaccaatta tttgtaaata aaatcttata aataaatata tagaaggagg tatttcatgc
    14401 gattaaagtc aatcataact gttatagctt taatattaat tatgtttatg tcagcgattg
    14461 aatcatctat tatttcgctt gcattaccta caattaaaca agatttaaat gcaggaaatt
    14521 taatttcatt aattttcaca gcgtatttta tcgcattagt aattgccaat cctatagtgg
    14581 gcgaattact ttcgagattt aaaattattt atgtggcaat tgcaggatta cttttattta
    14641 gtataggtag ttttatgtgt ggtttaagta ctaattttac tatgctaatt atatcacgcg
    14701 tgatacaagg ttttggatca ggtgtattga tgtcattatc gcaaattgtt ccaaagttag
    14761 catttgaaat tccgttacga tataaaatta tgggcatagt tggcagtgtt tggggtattt
    14821 cgagtatcat tgggccactt ctaggtggtg gtatattaga atttgcaaca tggcattggt
    14881 tattctacat aaatataccg attgcgatca ttgccattat attagttata tggacatttc
    14941 attttccaga ggaagaaaca gttgctaaat caaaatttga tactaaaggg ctcacgctat
    15001 tttatgtatt tattggattg attatgtttg ctttattaaa ccaacagctg ttacttttaa
    15061 atttcttgag ttttatctta gctatcgttg tggcaatgtg tttatttaaa gtagaaaaac
    15121 atgtttcttc accattttta cctgtggttg aatttaatcg ttcgattact ttagttttta
    15181 taactgacct tctaacagct atttgtttaa tgggattcaa tttatatatt ccagtctacc
    15241 ttcaagaaca actaggatta tctccattgc aaagtggatt ggttattttt cctttatctg
    15301 tagcttggat tacattgaat tttaatttac atcgaattga agcaaaacta tcaaggaaag
    15361 ttatttactt actatcattt acattgctac tagtaagtag tattatcatt tcatttggta
    15421 ttaaattgcc ggtacttata gcatttgtgt taattttggc aggattaagt tttggatata
    15481 tttatacgaa agatagtgtg attgtccaag aggaaactag cccattacaa atgaagaaaa
    15541 tgatgtcatt ttatggatta actaaaaatc ttggggcatc aataggttca acaataatgg
    15601 gatatcttta tgcgatacaa tcaggaatct ttggtccaaa cttacacaat gtgttaagtg
    15661 ctgttgctgt aattagcatt gggcttattg ttttatgggt cgtatttttt aaagaacagt
    15721 catctcaatc aaaagaatag aattatgatt aaaattgatg tagtgtaatt aaagtaagaa
    15781 ataataaatt tcctagatac tagataaatc gttcaatatt ttattaataa ggaggccaat
    15841 gattgtgaat tatcttaaac ataagtttta taacttgtta actacaatga ttgttctctt
    15901 tatttttgta ctttctggtg cgattttttt aacatttcta gggtttggtt tatatggatt
    15961 aagtagaata cttatttatt ttaggttggg tgactttaca tataatagaa gtatgtacga
    16021 taacctatta tattatggca gttatataat ctttgggtac ttcatcatat ttgcagtcga
    16081 gcatttaatg gattatttta gaaaaatgtt gcctgaaaat gcatatttta gaggcgcgac
    16141 ttttcatttg atttcttaca cagttgcaac aacgttattt tattttatta ttcatctgaa
    16201 ctatgtgtat atcaatatcg atttttgggt catcatggtt attatagggt tcttatatgt
    16261 ttgtaagctt caattttacc ctgaaagtaa aaatttaaat aatagaaaat agatatctga
    16321 agttgagggc acatatgtgt tccaacttct ttttgttcaa tagaagaatc gataatagtg
    16381 agtcttagtg ctcaatttgt ggtaaataag ttaaataacc attgtatgag tctgagacat
    16441 aaaataaatt attaggccct acaatgttat attgttagtt tttaagtaca cattagctgt
    16501 gcctaatgtg taagaaccaa taatgattta ttatgtagtg cttctttatt atttgagtac
    16561 tactcccatt atgttcatgg ctatacgtat taaagggaca agtgtatatc tgttttaaaa
    16621 aggaggaatt atgatggcta aagttgaatt aacaacccgg agacgaaact tcatagttgc
    16681 tgttatgttg attagtgcgt ttgtagctat tttaaatcaa acattattaa atacagcgtt
    16741 acctagtata atgagagaat taaatatcaa tgaaagtaca tcgcaatggc tagttactgg
    16801 gtttatgctt gttaatggcg tcatgatacc tctgacggca tatctaatgg atagaattaa
    16861 aactagacct ttatacttag cggcgatggg gacattttta ttaggttcta ttgttgcagc
    16921 cttagctccg aattttggag ttttaatgtt agctcgtgta attcaagcga tgggtgcagg
    16981 cgtacttatg cccttaatgc aatttacgtt atttacattg ttcagtaaag aacatcgagg
    17041 ttttgcaatg ggactagcag gtttagtaat tcaatttgca ccagcaatag gacctacagc
    17101 tacaggatta attattgatc aagcgagttg gcgagttcca tttattataa ttttaggaat
    17161 tgctatactt gcctttgttt tcggtttggt ttcaatctcg agttacaatg aagtgaaata
    17221 tacgaaatta gataagcgtt cagtaatgta ttcaactatt gggttcgggt taatgctata
    17281 cgcatttagt agtgcaggag atttaggatt tacaagtcca atagtaatag gtgcgttgat
    17341 attaagtatg gttattatct atttatttat acgtagacaa tttaatatta ctaatgcact
    17401 tttaaattta agggttttta aaaatagaac atttgcatta tgtacgatta gttcaatgat
    17461 tataatgatg tcaatggttg gacctgcgct gcttataccg ctatatgttc aaaacagttt
    17521 atctttatct gccttgttat caggacttgt tatcatgcct ggtgcaataa taaatggtat
    17581 tatgtcagtt tttacaggta aattttatga taagtatggt cctagaccat tgatttatac
    17641 tggttttaca attttaacaa ttactacaat tatgttgtgt ttcttgcata cagacacatc
    17701 ttatacgtat ttaatagtcg tatatgcaat tagaatgttt tcagtttctt tactcatgat
    17761 gccgataaat actacaggaa ttaattcttt gagaaatgaa gaaatctcac atggcacggc
    17821 tattatgaac tttggtcgtg taatggctgg ttcactaggc acagctttaa tggttacatt
    17881 aatgagtttt ggtgcaaaaa tatttttatc tacatcgcca tcgcatttaa ctgcaactga
    17941 aattaaacag caatccattg ctataggggt ggatatctca tttgcttttg tagctgtgct
    18001 tgttatggca gcttatgtga tagcactttt tataagagaa cctaaagaaa tagaaagtaa
    18061 tagaaggaaa ttttaaaata attatagtag ttggtctatt taaaataata ggctaactgc
    18121 tttttttatt taataaaaag ttttatactt ttagtgatag actaagcaaa aattgttatt
    18181 tgctatgatg tagatgtctt aaaatgatta agggggattt gctttgttaa cggtagatca
    18241 agtgaaagaa ttggtaggag aaattaaaga tcctattata gatgtgcctt taaaagaaac
    18301 agaaggtatt gttgaagttt ctattaagga agaaaaagaa catgtgagtg ttaaattagc
    18361 aatggcacaa ttaggtggtg caccgcaatt agatttacag atggctgttg ttaatgcatt
    18421 aaaagaaaac ggtgcgaaaa cggtcggtat acgatttgaa acattgccgg aagaaaaagt
    18481 aaatcaattt aaaccaaaag aagaaaataa acctaaaacg atagaaggcc tattatctca
    18541 aaataatcca gtcgaattta ttgcaatagc ctccggtaaa ggtggtgtcg gtaaatctac
    18601 tgttgcagta aatttagccg ttgccttagc tcgtgaaggg aaaaaagtcg gattagtaga
    18661 tgccgatata tatggattta gtgtaccaga tatgatgggt attgatgaaa agcctggaat
    18721 taaagggaag gaagtaattc cagttgaacg tcatggcgtt aaagttatat caatggcctt
    18781 ttttgtggaa gaaaatgcgc cagttatatg gagagggcca atgttaggta aaatgttgac
    18841 gaatttcttt acagaagtta aatggggaga cattgaatat ttaatactcg atcttccacc
    18901 tggaacagga gatgtagctt tagatgttca tacgatgtta ccttcaagta aggaaattat
    18961 tgtaacgaca cctcatccta cagcagcatt tgttgcagct cgcgcaggtg cgatggcaaa
    19021 acatacggat cattctattc ttggcgtaat tgaaaacatg agttattttg aaagtaaaga
    19081 gacgggtaat aaagaatatg tctttggcaa aggtggcggt actaagttag ctgatgaact
    19141 taatactcaa ttacttgggg aattaccttt agagcaacca tcttggaatc caaaagattt
    19201 tgcaccgtca atatatcaat cagatgatcg tctaggtaaa atttatagct cgattgcaca
    19261 aaaagttata gctgctacaa ataaataggt ataatatatg ctaaacgtac aaaattactt
    19321 ttattttgta cgtttttatg ttgatttgtt ttggaatgct ggtaaaataa gttcttgtgt
    19381 taagcaataa acgcgttgaa aaagaagcgg gttgtgaaca caaaaagttt ttaaaaaagt
    19441 tattgacttt aaattccaaa gttgataata tgataaagtc gtcaaaaacg acgcagttgt
    19501 ttttaaagaa gaatttcaaa agtgtaaaac ttaccattga aataactata aaaacaatat
    19561 agaataaata aagtaatcgt tcaaaaagtt attgacttca agaaataaat gaagtagaat
    19621 aaaagagatt gaacattaat gaacattgaa aactgaatga caatatgtca acgttaattc
    19681 caaaaacgta actat
//
LOCUS       DAMQWL010000043        19338 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.043, whole genome shotgun sequence.
ACCESSION   DAMQWL010000043 DAMQWL010000000
VERSION     DAMQWL010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 19338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19338
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.043"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(355..1302)
                     /locus_tag="PF788_001361"
     CDS             complement(355..1302)
                     /locus_tag="PF788_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDG6303626.1"
                     /translation="MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWI
                     HLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIW
                     ILCLVGIMTHMIIFSIKYLKDFSLKNVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTV
                     IYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVI
                     IFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKG
                     LLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ"
     gene            1551..1739
                     /locus_tag="PF788_001362"
     CDS             1551..1739
                     /locus_tag="PF788_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HDG6303627.1"
                     /translation="MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSL
                     KNAELLYKFANSIFSNEN"
     gene            complement(2214..2287)
                     /locus_tag="PF788_001363"
     tRNA            complement(2214..2287)
                     /locus_tag="PF788_001363"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2251..2253),aa:Arg,seq:tct)
     gene            2651..2785
                     /locus_tag="PF788_001364"
     CDS             2651..2785
                     /locus_tag="PF788_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class phenol-soluble modulin"
                     /protein_id="HDG6303628.1"
                     /translation="MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
                     "
     gene            2842..2976
                     /locus_tag="PF788_001365"
     CDS             2842..2976
                     /locus_tag="PF788_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class phenol-soluble modulin"
                     /protein_id="HDG6303629.1"
                     /translation="MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF
                     "
     gene            3100..3795
                     /locus_tag="PF788_001366"
     CDS             3100..3795
                     /locus_tag="PF788_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjG family noncanonical pyrimidine
                     nucleotidase"
                     /protein_id="HDG6303630.1"
                     /translation="MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDF
                     LTFKKINHQHWEAFQQNKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKV
                     KYFDQTLETIVELSKRHDLYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPN
                     PEFFNYVFNDIGEDERQHSIIVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDY
                     EINSWKQLNDIVR"
     gene            complement(3904..4344)
                     /locus_tag="PF788_001367"
     CDS             complement(3904..4344)
                     /locus_tag="PF788_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDG6303631.1"
                     /translation="MSEIKRLEINYKTDELFENFRAFGNKDLYMVNELNGQMIDASSD
                     SPFYGIFVGDQLGARMALLKKGDVEEIYFPDFEDYILLWKLEVLPKYQNRGYASELID
                     FAKSFNMPIKAIGRNDSKDFFLHHGFTDVEAKNIEGHDVLLWKP"
     gene            4539..6152
                     /gene="bshC"
                     /locus_tag="PF788_001368"
     CDS             4539..6152
                     /gene="bshC"
                     /locus_tag="PF788_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000340457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis cysteine-adding enzyme
                     BshC"
                     /protein_id="HDG6303632.1"
                     /translation="MDCKVVSLNEKDQFIPKIKSSDPVITGLFQYDAAQQTSFEKRMS
                     KENNGREAALANVIREYMSDLKLSSEQELNIQHLANGSKVVIGGQQAGLFGGPLYTFH
                     KIFSIITLSKELTDTHKQQVVPVFWIAGEDHDFDEVNHTFVYNENHGSLHKVKYHTME
                     MPETTVSRYYPDKAELKQTLKTMFIHMKETVHTQGLLEICDRIIDQYDSWTDMFKALL
                     HETFKAYGVLFIDAQFEPLRKMEAPMFKKILKKHQLLDDAFRATQQRTQNQGLNAMIQ
                     TDTNVHLFLHDENMRQLVSYDGKHFKLNKTDKTYIKEEIINIAENQPELFSNNVVTRP
                     LMEEWLFNTVAFVGGPSEIKYWAELKDVFELFDVEMPIVMPRLRITYLNDRIEKLLSK
                     YNIPLEKVLVDGVEGERSKFIREQASHQFIEKVEGMIEQQRRLNKDLLDEVAGNQNNI
                     NLVNKNNEIHIQQYDYLLKRYLLNIERENDISMKQFREIQETLHPMGGLQERIWNPLQ
                     ILNDFGTDVFKPSTYPPLSYTFDHIIIKP"
     gene            6296..6727
                     /gene="mraZ"
                     /locus_tag="PF788_001369"
     CDS             6296..6727
                     /gene="mraZ"
                     /locus_tag="PF788_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDG6303633.1"
                     /translation="MFMGEYDHQLDAKGRMIIPSKFRYDLNERFIITRGLDKCLFGYT
                     LDEWQQIEEKMKTLPMTKKDARKFMRMFFSGAVEVELDKQGRINIPQNLRKYANLTKE
                     CTVIGVSNRIEIWDRETWNDFYEESEESFEDIAEDLIDFDF"
     gene            6743..7678
                     /gene="rsmH"
                     /locus_tag="PF788_001370"
     CDS             6743..7678
                     /gene="rsmH"
                     /locus_tag="PF788_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017724209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDG6303634.1"
                     /translation="MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLND
                     DGRLIAIDQDQTAIDNAKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLG
                     VSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFS
                     KQIARRIEAHREQQPITTTLELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELS
                     AFEDSIEQAIELVKVDGRISVITFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTP
                     KLKRVNRKPITATEEDLDDNNRARSAKLRVAEILK"
     gene            7692..8093
                     /gene="ftsL"
                     /locus_tag="PF788_001371"
     CDS             7692..8093
                     /gene="ftsL"
                     /locus_tag="PF788_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDG6303635.1"
                     /translation="MAVEKVYQPYDEQVYNSIPKQQPQTKPEKKTVSRKVVVQLTKFE
                     KVLYITLITVIAMLSIYMLSLKMDAYDTRGKIADLDYKIDKQSSENSALQSEIKKNSS
                     YERIYEKAKKQGMSLENDNVKVVRSNGEAKN"
     gene            8074..10308
                     /locus_tag="PF788_001372"
     CDS             8074..10308
                     /locus_tag="PF788_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HDG6303636.1"
                     /translation="MAKQKIKIKKNKIGAVLLVGLFGLLFFILVLRISYIMITGHSNG
                     QDLVMKANEKYLVKNAQQPERGKIYDRNGKVLAEDVERYKLVAVIDKKASANSKKPRH
                     VVDKKETAKKLSTVINMKPEEIEKRLSQKKAFQIEFGRKGTNLTYQDKLKIEKMNLPG
                     ISLLPETERFYPNGNFASHLIGRAQKNPDTGELKGALGVEKIFDSYLSGSKGSLRYIH
                     DIWGYIAPNTKKEKQPKRGDDVHLTIDSNIQVFVEEALDGMVERYQPKDLFAVVMDAK
                     TGEILAYSQRPTFNPETGKDFGKKWANDLYQNTYEPGSTFKSYGLAAAIQEGAFDPDK
                     KYKSGHRDIMGSRISDWNRVGWGEIPMSLGFTYSSNTLMMHLQDLVGADKMKSWYERF
                     GFGKSTKGMFDGEAPGQIGWSNELQQKTSSFGQSTTVTPVQMLQAQSAFFNDGNMLKP
                     WFVNSVENPVSKRQFYKGQKQIAGKPITKDTAEKVEKQLDLVVNSKKSHAANYRIDGY
                     EVEGKTGTAQVAAPNGGGYVKGPNPYFVSFMGDAPKKNPKVIVYAGMSLAQKNDQEAY
                     ELGVSKAFKPIMENTLKYLNVGKSKDDTSNAEYSKVPDVEGQDKQKAIDNVSAKSLEP
                     VTIGSGTQIKAQSIKAGNKVLPHSKVLLLTDGDLTMPDMSGWTKEDVIAFENLTNIKV
                     NLKGSGFVSHQSISKGQKLTEKDKIDVEFSSENVDSNSTNNSDSNSDDKKKSDSKTDK
                     DKSD"
     gene            10600..11565
                     /locus_tag="PF788_001373"
     CDS             10600..11565
                     /locus_tag="PF788_001373"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDG6303637.1"
                     /translation="MIFVYALLALVITFVLVPVLIPTLKRMKFGQSIREEGPQSHMKK
                     TGTPTMGGLTFLLSIVITSLVAIIFVDQANPIILLLFVTIGFGLIGFIDDYIIVVKKN
                     NQGLTSKQKFLAQIGIAIIFFVLSNVFHLVNFSTSIHIPFTNVAIPLSFAYVIFIVFW
                     QVGFSNAVNLTDGLDGLATGLSIIGFTMYAIMSFVLGETAIGIFCIIMLFALLGFLPY
                     NINPAKVFMGDTGSLALGGIFATISIMLNQELSLIFIGLVFVIETLSVMLQVASFKLT
                     GKRIFKMSPIHHHFELIGWSEWKVVTVFWAVGLISGLIGLWIGVH"
     gene            11567..12916
                     /locus_tag="PF788_001374"
     CDS             11567..12916
                     /locus_tag="PF788_001374"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDG6303638.1"
                     /translation="MLNYTGLENKNVLVVGLAKSGYEAAKLLSKLGANVTVNDGKDLS
                     QDAHAKDLESMGISVVSGSHPLTLLDNNPIIVKNPGIPYTVSIIDEAVKRGLKILTEV
                     ELSYLISEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT
                     DYLVTELSSFQLLGIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDY
                     LICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGVRIINTEDLVLPGEH
                     NLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRTNKYYNDSKATNTLA
                     TQFALNSFNQPIIWLCGGLDRGNEFDELIPYMENVRAMVVFGQTKAKFAKLGNSQGKS
                     VIEANNVEDAVDKVQDIIEPNDVVLLSPACASWDQYSTFEERGEKFIERFRAHLPSY"
     gene            12932..14251
                     /locus_tag="PF788_001375"
     CDS             12932..14251
                     /locus_tag="PF788_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDG6303639.1"
                     /translation="MDDKTKNDQQESNEDKDELELFTRNTSKKRRQRKRSKATHFSNQ
                     NKDDTSQQADFDEEIYLINKDFKKEESNDKNNDSASSHANDNNIDDSTDSNIENEDYR
                     YNQEIDDQNESNVISVDNEQPQSAPKEQNSDSIDEETVTKKERKSKVTQLKPLTLEEK
                     RKLRRKRQKRIQYSVITILVLLIAVILIYMFSPLSKIAHVNINGNNHVSTSKINKVLG
                     VKNDSRMYTFSKKNAINDLEENPLIKSVEIHKQLPNTLNVDITENEIIALVKYKGKYL
                     PLLENGKLLKGSNDVKINDAPVMDGFKGTKEDDMIKALSEMTPEVRRYIAEVTYAPSK
                     NKQSRIELFTTDGLQVIGDISTISKKMKYYPQMSQSLSRDSSGKLKTRGYIDLSVGAS
                     FIPYRGNTSSQSESDKNVTKSSQEENQAKEELQSVLNKINKQSSKNN"
     gene            14357..15769
                     /gene="ftsA"
                     /locus_tag="PF788_001376"
     CDS             14357..15769
                     /gene="ftsA"
                     /locus_tag="PF788_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDG6303640.1"
                     /translation="MEEHYYVSIDIGSSSVKTIVGEKFHNGINVIGTGQTYTSGIKNG
                     LIDDFDIARQAIKDTIKKASIASGVDIKEVFLKLPIIGTEVYDESNEIDFYEDTEING
                     SHIEKVLEGIREKNDVQETEVINVFPIRFIVDKENEVSDPKELIARHSLKVEAGVIAI
                     QKSILINMIKCVEACGVDVLDVYSDAYNYGSILTATEKELGACVIDIGEDVTQVAFYE
                     RGELVDADSIEMAGRDITDDIAQGLNTSYETAEKVKHQYGHAFYDSASDQDIFTVEQV
                     DSDETVQYTQKDLSDFIEARVEEIFFEVFDVLQDLGLTKVNGGFIVTGGSANLLGVKE
                     LLSDMVSEKVRIHTPSQMGIRKPEFSSAISTISSSIAFDELLDYVTINYHDNEETEED
                     VIDVKDKDNESKLGGFDWFKRKTNKKDTHENEVESTDEEIYQSEDNHQEHKQNHEHVQ
                     DKDKDKEESKFKKLMKSLFE"
     gene            15802..16974
                     /gene="ftsZ"
                     /locus_tag="PF788_001377"
     CDS             15802..16974
                     /gene="ftsZ"
                     /locus_tag="PF788_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDG6303641.1"
                     /translation="MLEFEQGFNHLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAIN
                     TDGQALNLSKAESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVT
                     SGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDT
                     LIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM
                     SNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQ
                     EAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGFDDKPTSHGRKSGSTGFGTS
                     VNTSSNATSKDESFTSNSSNAQATDSVSERTHTTKEDDIPSFIRNREERRSRRTRR"
     gene            17234..18025
                     /gene="pgeF"
                     /locus_tag="PF788_001378"
     CDS             17234..18025
                     /gene="pgeF"
                     /locus_tag="PF788_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDG6303642.1"
                     /translation="MNDNFKKQPHHLIYEELLQQGITLGITTRGDGLSDYPKNAFNMA
                     RYIDDRPYNITQHQLQLAEEIAFDRKNWVFPIQTHENKVACITKDDIGTNIDTLTDAL
                     HGIDAMYTYDSNVLLTMCYADCVPVYFYSTKHHFIALAHAGWRGTYTEIVKEVLKHVN
                     FDLKDLHVVIGPSTSSSYEINDDIKNKFETLPIDSANYIETRGRDRHGIDLKKANAAL
                     LIYYGVPKENIYTTAYATSEHLELFFSYRLEKGQTGRMLAFIGQQ"
     gene            18049..18717
                     /locus_tag="PF788_001379"
     CDS             18049..18717
                     /locus_tag="PF788_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDG6303643.1"
                     /translation="MKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYE
                     AGIRHFGENRLEGFFQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAK
                     EINKRAEHKIKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTD
                     DEAYIRSLFKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLV
                     GEEE"
     gene            18714..19277
                     /locus_tag="PF788_001380"
     CDS             18714..19277
                     /locus_tag="PF788_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HDG6303644.1"
                     /translation="MSHLALKDLFSGFFVIDDEEEVEVPDKQQQVNEAPAKEQSQQTT
                     KQNAIKSVPQKSASRYTTTSEERNNRMSNYSKNNSRNVVTMNNATPNNASQESSKMCL
                     FEPRVFSDTQDIADELKNRRATLVNLQRIDKVSAKRIIDFLSGTVYAIGGDIQRVGTD
                     IFLCTPDNVEVAGSITDHIENMEHSFD"
BASE COUNT         7189 a         2627 c         3638 g         5884 t
ORIGIN      
        1 taccttctga aatgataaaa gataggcaaa ggaaaaataa cggtgtttaa tttatcgata
       61 tttagaggtg ataaaatttg tcaactatta caaagactaa aataaaaatc tttattaatt
      121 attttattgg tatattagcc ttggcgtttg ctgcttatat attatttaaa taaagtttag
      181 agtgaaacgt gtttatgaac tagacgttct agtatagtta ctatagcttt agtcagaagg
      241 tatcattgat aagatcatat taaatcaaag aggcattgat atacactaaa aagaggcaag
      301 attacctgcc tctttttagt tattaaatat acgtgttaat tcttggtaat agtgttactg
      361 agacgcatta cgaagaaatt tatcttgttt ttcctttttt aaaaagaagt gaagatatcc
      421 tataaagact ctaagtacta ttacagtggc taataacact tcgataaaca aaagaccttt
      481 ccaaatgtct ggaaacataa gtacaggcaa actgttcttt aaagcagttg ctgagattac
      541 taaagggaat gtgaaagctg aaaatacggg cgaaaaaggt tcttttagta atttaggcaa
      601 ttgtataatg atataaaaat aaaatatttg agctaatagt aaaaatataa ttacgataaa
      661 agcattcgcc ttaggaaaag ctataacata tgctgcagcg actaaagaaa atggtgcaca
      721 aattgtcgat gtgttcggtt tgattgacgt ctgcaatgga aatgctttta atcgcttgaa
      781 aactataggt aagacaatac aagtagctac aaagccatat attactgtta attgacctat
      841 gaaaaaatat ccgctaacgg gtgccgtcaa tcctgcgata gcaataccaa taaaaagtac
      901 agtccacgaa ggataaacat ttttaagtga aaaatctttt aaatatttta ttgaaaaaat
      961 aatcatatgc gtcataattc ccacaaggca taaaatccaa ataggcgtta ttaagctatt
     1021 gataaaagtt atgttactaa aaaatgtatt taaataagta gtacctaaaa agccagacat
     1081 gaaaaatgtt gtgaacactg atgaaactag aggactgttt aattgttctt tcacattatt
     1141 aaaatatttg atcatagtac ataaaaggtg aatccaaatc aagaaagcaa agattccgca
     1201 aacagcgttt aaagtaagag ataagtcttt taatagatta cccaggccta ataatcctaa
     1261 gactagtcct gacgttacta gaggtgcttt ttgaagtctc atgatttaca acctttctta
     1321 tgtgattttc ttcactaatt atatcatgat agctatggcc aattaataag aagagtgtgt
     1381 actattacgt tattagagta tgtatattgg attgatagac acataattga catttaaatc
     1441 tcaaaattaa tgatatttga ggtatgcttt gcaacctaaa tattggaata tgtggaaaag
     1501 taattattta atttaaatga tgattgaaga tttacaaggg ggtgtacaaa atgagaaatc
     1561 aaattcaaaa actattagac agtgatttga gcagtttaca tatatcgaaa caaacaggag
     1621 ttccacaaag cacaatacac agaatgagaa aaaatgaaag atcattagac aatatgtcat
     1681 tgaaaaacgc tgaactactt tataaatttg ccaatagtat atttagcaat gaaaattaag
     1741 aagaataatt agtgagttaa ataattaaaa aaccacgtct cgatggacgt ggttattttt
     1801 tttagatgta tataattata attataggat ttcgggcccc tgaaaagtcc ctaaaatttt
     1861 gaatagtatc aaaatctata ggaataatat aataataaaa atctctacgc atgcaaatgg
     1921 tgagtgttaa aaatcttggt gtagtgttgg tgtagttcag gtgcagtata gatgaaattt
     1981 gagcacaaaa ttacttaatt aaaaatgtat aaacaagtgt cagacgcgtg tcaattgtgt
     2041 gtcaaaaaat tctataacga ataagcatgc ttgttttaat tactgtattt tcggggctta
     2101 tgcgggggac gttttggtga cgcatcatac tatattactg aaattcaaaa caaaaagagc
     2161 cccgtaatca cggaactctt ttgtttggta atgcgtataa aaatacctat aaacgtcctg
     2221 ggagggattc gaacccccga ccgatggctt agaaggccat tgctctatcc agctgagcta
     2281 ccaggacacg tttaacaaca caagaattat tatatctaaa tgaacttaaa ttagcaatac
     2341 cttgtaaata aaaaatgttt atatttttca ctattataga gctatttatc taaaaaggtt
     2401 caataagact taaatacgaa ttcaggcaac ttaattgtgt taaatacagt tttgaatgcc
     2461 taactgtatt tcttttctct ttaaaataca gttaagtaca ttataagatg ttgtgcggat
     2521 aaacaaacta attgtatcaa atttatttta aaataacaac aacaaaacga taagcgaata
     2581 acatttcggt gatttaaaag ctacgcacgt ttttgttatc ttcaaattta aattttaagg
     2641 agtgttttca atggaaggtt tatttaacgc aattaaagat accgtaactg cagcaattaa
     2701 taatgatggc gcaaaattag gcacaagcat tgtgagcatc gttgaaaatg gcgtaggttt
     2761 attaggtaaa ttattcggat tctaatttca atatgttatg taagtaatca gtattatttc
     2821 aaaggtgagg gagagattta aatgactgga ctagcagaag caatcgcaaa tactgtgcaa
     2881 gctgcacaac aacatgatag tgtgaaatta ggcacaagta tcgtagacat cgttgctaac
     2941 ggtgtgggtt tactaggtaa attatttgga ttctaatata ataactaata ttctttaaaa
     3001 taaactgggt gagcatactt taatgttatg cactcagttt attttatttg cagaaatttg
     3061 agcctctgtt aagatttaga tacatagaca atataggaga tggggaaatt gggatataaa
     3121 aatattttga tagactttga tgatacaatt gttgattttt atgatgcaga agaatgggcg
     3181 tttcactata tggcgaatgt ttttaatcat aaagcaacaa aggatgattt tttaacattt
     3241 aaaaaaatca atcaccaaca ttgggaagct tttcaacaaa ataaattaac gaagtctgaa
     3301 gtattatcag aacgatttgt gaattacttc aaacatcatc aaatggaagt tgatgggcat
     3361 cgtgcagatg tgttatttag aaatggatta gcagaagcta aagttaaata ctttgatcaa
     3421 acattagaaa caattgtcga attatcgaaa agacatgatt tatatattgt tactaatggt
     3481 gtaaccgaaa cgcaaaagag aaggttaaat cagacgccgt tgcataaata tattaaaaag
     3541 atatttatat ctgaagaaac aggatatcaa aaacctaatc cggaattttt taattatgtt
     3601 tttaatgata ttggtgagga tgaaagacag cactcgatta tagttggaga ttctttaaca
     3661 tctgacattc taggtggaat caatgcgggt atagctactt gctggtttaa ttttagagga
     3721 tttgatcata atccaggaat tatacctgat tatgaaatta attcatggaa acaactaaat
     3781 gatattgtac gttaagacaa ataatttgaa aatgatttac ttatattagc ttaagaaagt
     3841 aattgtaaaa aagacactac gaaaagatgc attttcatgc tcgtagtgtc gaatattatt
     3901 atcttatggt ttccacaata agacatcatg tccctctata tttttagctt ccacatctgt
     3961 aaatccatga tgtaaaaaga aatccttaga atcatttctg ccaatggctt taattggcat
     4021 attgaaactc tttgcaaaat caatcaattc tgaagcgtac cctctgtttt gatattttgg
     4081 taatacttct aacttccata ataatatata atcttcaaaa tctgggaagt agatttcttc
     4141 gacatcacct ttttttagta atgccattct agctcctaat tgatctccga caaatatgcc
     4201 ataaaatggt gaatctgaac ttgcatcaat catttgaccg tttaactcat tgaccatgta
     4261 taagtctttg ttgccaaacg ctctaaagtt ttcgaataat tcgtcagttt tgtaattaat
     4321 ttcaagacgt ttgatttcac tcatatttat ctacccctta tttgtttact actattatta
     4381 tacattaaac cacttgtgtt tttcattgat ttgaaaatgt aaaacaatga atattataaa
     4441 ttttccatga ttaaattgat tttcaagccg taaaattgtc aatcaccggt atagacttta
     4501 tactatagtt tgtaatcgcg tacttaagga gaaaaaacat ggactgtaaa gtagttagtt
     4561 taaatgaaaa agatcagttt ataccaaaaa taaagagcag tgaccctgta ataacaggat
     4621 tatttcaata tgatgcagct caacaaacta gttttgaaaa aaggatgtct aaagaaaata
     4681 atggaagaga agcggcatta gcgaatgtta ttcgtgaata tatgagtgat ttaaagcttt
     4741 caagtgaaca agaattaaac atacaacatt tagctaatgg ttcaaaagtt gtgattggtg
     4801 gacaacaagc agggcttttc gggggaccat tgtatacatt ccataaaata ttttcaatca
     4861 ttactttatc taaggaatta acggatacac ataagcaaca agtagtacca gttttttgga
     4921 ttgcaggaga agatcatgat ttcgatgaag tgaatcatac atttgtttat aacgaaaatc
     4981 atgggtcgct gcataaggtt aaatatcata caatggagat gccagagacg actgtctcta
     5041 gatattatcc tgataaggct gagttgaaac aaactttaaa aacgatgttc attcatatga
     5101 aagaaactgt tcatacacaa ggtctactgg agatttgtga cagaattatt gaccaatatg
     5161 actcgtggac tgatatgttt aaagcactac tgcatgaaac atttaaagca tatggcgttc
     5221 tatttataga tgcgcagttt gagccgttaa gaaaaatgga agcgcctatg tttaaaaaga
     5281 ttttgaaaaa acatcagttg cttgatgatg cttttagagc aacacaacaa cgtactcaaa
     5341 atcaaggctt gaatgcgatg atacaaacag atacaaatgt tcatttattc ttacatgatg
     5401 aaaatatgcg tcaattagtt tcgtatgatg gtaagcattt taaattaaat aaaacagata
     5461 agacatatat aaaggaagaa attataaata ttgcggaaaa tcaacctgaa ttattttcta
     5521 ataatgtagt gacaagacca ttaatggaag aatggttatt taacacggtg gcatttgttg
     5581 gaggaccgag tgaaattaag tactgggctg aactaaaaga tgtatttgaa ctatttgatg
     5641 ttgaaatgcc tatcgtgatg ccaaggctta gaattactta tttaaatgac cgtatagaaa
     5701 aattactttc gaaatacaat attccattag aaaaagtgtt agtcgatggt gttgaaggag
     5761 aaagaagtaa gtttattaga gaacaagcat cacatcaatt tattgaaaag gtagaaggta
     5821 tgattgaaca acagcgtcgt ctaaacaaag acttattaga tgaagtggcg gggaatcaaa
     5881 ataatattaa ccttgtgaat aaaaataatg aaattcatat acaacagtat gattatttgt
     5941 taaaacgtta tcttttaaac attgaaagag aaaacgacat cagtatgaag caatttagag
     6001 aaattcaaga aacactccat ccaatgggag gattacaaga aagaatatgg aatccacttc
     6061 aaattttgaa tgattttggg acagatgtgt tcaagccctc cacctatcca ccactttctt
     6121 acacttttga tcatattatt ataaaacctt aatataccaa gggtttagcc cgatttatct
     6181 taatgataaa tcgggcattt ttttgttttt taaaataaat ttcacaaatt ttgtataaat
     6241 agtggtggat agtggggaga tgtggtaaat tatatataag gtgaggtgat aaaaaatgtt
     6301 catgggagaa tacgatcatc aattagatgc aaaaggacgt atgattatac cgtccaagtt
     6361 tcgttatgac ttaaatgagc gttttattat cacaagaggc cttgataaat gtttattcgg
     6421 ttacactcta gacgaatggc aacagattga agagaaaatg aaaaccttac ctatgacaaa
     6481 aaaagacgca cgtaagttta tgcgtatgtt cttctctggt gctgttgaag tagaacttga
     6541 taagcaaggg cgtattaaca tccctcaaaa cttgaggaaa tacgctaatt taactaaaga
     6601 atgtacagta atcggtgttt caaatcgtat tgagatttgg gatagagaaa cttggaatga
     6661 tttctatgaa gaatctgaag aaagtttcga agatattgct gaagatttaa tagattttga
     6721 tttttaaaat ggaggaattg aagtgtttca tcatatcagc gttatgttaa acgaaaccat
     6781 tgattattta aatgtaaaag aaaatggtgt gtacattgac tgtacgctag gtggagcggg
     6841 acatgccctt tatttactaa atcaattaaa tgacgacgga agattaatag caatcgatca
     6901 agaccaaact gcaattgata atgctaaaga ggtattaaag gatcatttgc ataaggtgac
     6961 ttttgttcat agcaacttcc gtgaattaac tcaaatatta aaagacttaa acattgaaaa
     7021 agtagatgga atttattacg acttgggtgt ttcaagccca caactcgaca ttccagaacg
     7081 aggattcagt tatcaccatg acgcaacatt agacatgcgt atggaccaaa cacaagaact
     7141 aacagcatat gaaattgtta acaattggtc atatgaagcg ttagtgaaga ttttttatcg
     7201 ctatggcgag gagaaatttt caaaacagat agctcgaaga atcgaagcac atcgcgaaca
     7261 acaaccaata acaacaacat tagaattagt tgacattata aaagaaggta ttcctgcaaa
     7321 agcaagaaga aaaggcggac atcctgcaaa acgagtattt caagcactac gaattgcagt
     7381 aaacgatgaa ttgtcagctt ttgaagattc aatagaacaa gcgattgaat tagtgaaagt
     7441 agatggcagg atttcggtaa tcactttcca ttctttagaa gatcgtttat gtaaacaggt
     7501 gttccaagaa tatgaaaaag gtccagaggt accaagagga ttaccagtta taccagaagc
     7561 atatacacct aagttaaagc gtgttaatcg taaaccgatt accgctacag aagaagattt
     7621 agatgacaat aacagagcac gaagcgcgaa attacgtgta gctgaaatac ttaaataagg
     7681 agcaatttat aatggctgta gaaaaagtgt accaaccata tgacgaacaa gtttataata
     7741 gtataccgaa gcaacaacca caaactaagc ccgaaaagaa gactgtttcg agaaaagtgg
     7801 ttgtacaatt aactaaattt gaaaaagttt tatacataac tttgattact gtaattgcta
     7861 tgttaagtat ttatatgcta tctttaaaaa tggatgcgta tgatacgcga ggaaagattg
     7921 cagatttaga ttataaaata gataaacaat caagtgaaaa cagtgcttta caatctgaaa
     7981 tcaaaaagaa ttcttcttat gaacgcatat acgaaaaggc taagaaacag gggatgagcc
     8041 ttgagaacga taatgtaaag gtagtgcgta gtaatggcga agcaaaaaat taaaattaaa
     8101 aaaaataaaa taggggcagt cctacttgtt ggtttattcg gactgctctt ttttatattg
     8161 gttttaagaa tttcatatat catgattact ggacattcta atggtcaaga tttagtcatg
     8221 aaggcaaatg aaaagtattt agttaagaat gcacaacaac cagaacgagg aaagatatat
     8281 gatcgtaatg gtaaagtgct agcagaagat gtagaaagat ataaacttgt tgcagtaata
     8341 gataaaaagg cgagtgccaa ttctaaaaaa cctaggcatg tagttgataa aaaagagact
     8401 gcaaagaaat tatctacagt cattaatatg aagccagagg aaattgaaaa gagacttagt
     8461 caaaagaaag ctttccaaat tgaatttgga cgcaaaggaa caaatttaac gtatcaggac
     8521 aaattgaaaa tagagaaaat gaatttgcct ggtatttctt tattgcctga aacagaacgc
     8581 ttttatccaa atggcaattt tgcatcacac ttaattggta gagctcagaa aaatccggat
     8641 actggtgaac ttaaaggtgc acttggagtt gaaaagattt ttgatagtta tttaagtgga
     8701 tctaaaggat cattgagata tattcatgat atttggggat atatcgcacc aaatactaaa
     8761 aaagagaagc agcctaaacg tggtgatgat gtccatttaa caatcgattc aaatattcaa
     8821 gtatttgttg aagaagcttt agatggcatg gttgaaagat accagccgaa agatttattt
     8881 gcggttgtca tggatgccaa aactggagaa attttagcat acagtcagcg accaacattt
     8941 aatcctgaaa ctggtaaaga ctttggtaaa aagtgggcaa atgaccttta tcaaaacaca
     9001 tacgagcctg gatcaacatt taaatcatat gggttagcag ctgctattca agaaggtgct
     9061 tttgatcctg ataagaaata taaatctgga catagagata ttatgggttc acgtatttca
     9121 gactggaata gagtcggttg gggtgaaatc ccaatgtcac tcggatttac ttattcatct
     9181 aatacattga tgatgcattt acaagattta gttggtgcag acaaaatgaa atcttggtat
     9241 gaacgatttg gatttggaaa atcaactaaa ggtatgtttg atggagaagc acctggtcaa
     9301 attggatgga gtaatgagtt gcaacaaaaa acgtcatcat ttggtcaatc gacaacagta
     9361 acacctgttc aaatgttaca agcgcaatca gcgttcttta atgatggtaa tatgttaaaa
     9421 ccatggtttg tgaatagcgt tgaaaatcct gttagtaaaa gacaatttta taaagggcaa
     9481 aaacaaatcg caggcaaacc aataacaaaa gatactgctg aaaaagttga aaagcaattg
     9541 gatttagttg tgaatagtaa gaagagtcac gctgcaaact atcgtattga tggttatgag
     9601 gtcgaaggta agactggtac agcacaagtc gctgcaccta atggtggtgg atacgttaaa
     9661 ggtccaaacc catattttgt aagttttatg ggtgacgcgc cgaagaaaaa tcctaaagtt
     9721 attgtatacg ctggtatgag cttggcacaa aaaaatgacc aagaagctta tgaattaggt
     9781 gttagtaaag cgtttaaacc aataatggaa aatactttga aatatttaaa tgtaggtaaa
     9841 tcaaaagatg acacatctaa tgcagagtat agtaaagtgc cagatgttga aggtcaagac
     9901 aaacaaaaag ctattgataa tgtgagtgca aaatcattag aaccagttac tattggttct
     9961 ggcacacaaa taaaagcaca atctataaaa gcagggaata aagtcttacc tcatagtaaa
    10021 gtactgttat taacagatgg agacttaact atgcctgaca tgtcaggatg gacgaaagaa
    10081 gatgtcattg cttttgaaaa cctaacaaat attaaagtaa atttaaaagg tagcggtttt
    10141 gtgtcccacc aatcaattag taagggacaa aaacttactg aaaaagataa aatagacgta
    10201 gaattttcat cagagaatgt agacagcaat tcgacgaata attctgattc aaattcagat
    10261 gataagaaga aatctgacag taaaactgac aaggataagt cggactaaca agaatggcta
    10321 cattaaatta ggatgtattg tcactatttg tttttactaa agtaatgctg tgatagaaaa
    10381 caacatcttc atttaatctt tataaataag tgttgataga gaattttaag gtagacgagg
    10441 tcagattaac ttgtttgtta taggcaaact ttttatactg gcctcttatg ccgtaaaaaa
    10501 gaaaaattat aaattttgat tacaactttg tttatttaat tgaaaaattg ataatatatt
    10561 agtggttaaa aaagtctgga ttaagaagag gagatagtta tgatttttgt atatgcgtta
    10621 ttagcgctag tgattacatt tgttttggta cctgttttaa tacctacatt aaaaaggatg
    10681 aaatttggtc aaagtattcg agaagaaggt ccacaaagcc atatgaagaa gactggtaca
    10741 ccaacgatgg gtggactaac atttctatta agtattgtga taacgtcttt ggtggctatt
    10801 atatttgtag atcaagctaa tccaatcata ctgttattat ttgtgacgat tggttttggg
    10861 ttaattggtt ttatagatga ttatattatt gttgttaaaa agaataacca aggtttaaca
    10921 agtaaacaga agtttttggc gcaaattggt attgcgatta tattctttgt tttaagtaat
    10981 gtgtttcatt tggtgaattt ttctacgagc atacatattc catttacgaa tgtagcaatc
    11041 ccactatcat ttgcatatgt tattttcatt gttttttggc aagtaggttt ttctaatgca
    11101 gtaaatttaa cagatggttt agatggatta gcaactggac tgtcaattat cggatttaca
    11161 atgtatgcca tcatgagctt tgtgttagga gaaacggcaa ttggtatttt ctgtatcatt
    11221 atgttgtttg cacttttagg atttttacca tataacatta accctgctaa agtgtttatg
    11281 ggagatacag gtagcttagc tttaggtggt atatttgcta ccatttcaat catgcttaat
    11341 caggaattat cattaatttt tataggttta gtattcgtaa ttgaaacatt atctgttatg
    11401 ttacaagtcg ctagctttaa attgactgga aagcgtatat ttaaaatgag tccgattcat
    11461 catcattttg aattgatagg atggagcgaa tggaaagtag ttacagtatt ttgggctgtt
    11521 ggtctgattt caggtttaat cggtttatgg attggagtgc attaagatgc ttaattatac
    11581 agggttagaa aataaaaatg tattagttgt cggtttggca aaaagtggtt atgaagcagc
    11641 taaattatta agtaaattag gtgcgaatgt aactgtcaat gatggaaaag acttatcaca
    11701 agatgctcat gcaaaagatt tagaatctat gggcatttct gttgtaagtg gaagtcatcc
    11761 attaacgttg cttgataata atccaataat tgttaaaaat cctggaatac cttatacagt
    11821 atctattatt gatgaagcag tgaaacgagg tttgaaaatt ttaacagaag ttgagttaag
    11881 ttatctaatc tctgaagcac caatcatagc tgtaacgggt acaaatggta aaacgacagt
    11941 tacttctcta attggagata tgtttaaaaa aagtcgctta actggaagat tatccggcaa
    12001 tattggttat gttgcatcta aagtagcaca agaagtaaag cctacagatt atttagttac
    12061 agagttgtcg tcattccagt tacttggaat cgaaaagtat aaaccacaca ttgctataat
    12121 tactaacatt tattcggcgc atctagatta ccatgaaaat ttagaaaact atcaaaatgc
    12181 taaaaagcaa atatataaaa atcaaacgga agaggattat ttgatttgta attatcatca
    12241 aagacaagtg atagagtcgg aagaattaaa agctaagaca ttgtatttct caactcaaca
    12301 agaagttgat ggtatttata ttaaagatgg ttttatcgtt tataaaggtg ttcgtattat
    12361 taacactgaa gatctagtat tgcctggtga acataattta gaaaatatat tagcagctgt
    12421 gcttgcttgt attttagctg gtgtacctat taaagcaatt attgatagtt taactacatt
    12481 ttcaggaata gagcatagat tgcaatatgt tggtactaat agaactaata aatattataa
    12541 tgattccaaa gcaacaaaca cgctagcaac acagtttgcc ttaaattcat ttaatcaacc
    12601 aatcatttgg ttatgtggtg gtttggatcg agggaatgaa tttgacgaac tcattcctta
    12661 tatggaaaat gttcgcgcga tggttgtatt cggacaaacg aaagctaagt ttgctaaact
    12721 aggtaatagt caagggaaat cggtcattga agcgaacaat gtcgaagacg ctgttgataa
    12781 agtacaagat attatagaac caaatgatgt tgtattattg tcacctgctt gtgcgagttg
    12841 ggatcaatat agtacttttg aagagcgtgg agagaaattt attgaaagat tccgtgccca
    12901 tttaccatct tattaaaggg tgtgagtatt gatggatgat aaaacgaaga acgatcaaca
    12961 agaatcaaat gaagataaag atgaattaga attatttacg aggaatacat ctaagaaaag
    13021 acggcaaaga aaaagatcaa aggctacaca tttttctaat caaaataaag atgatacatc
    13081 tcaacaagct gattttgatg aagaaattta cttgataaat aaagacttca aaaaagaaga
    13141 aagcaatgat aaaaataatg attctgcttc tagtcatgcg aatgataata atatcgatga
    13201 ttctacagac tctaatattg aaaatgagga ttatagatat aatcaagaaa ttgacgacca
    13261 aaatgaatcg aatgtaattt cagtcgacaa cgaacaacct caatcagctc ctaaagaaca
    13321 aaatagcgac tcgattgatg aggaaacagt aacgaaaaaa gaacgaaaaa gtaaagtaac
    13381 acaattaaag ccattaacac ttgaagaaaa gcggaagtta agacgtaagc gacaaaagcg
    13441 aatccaatac agtgttatta caatattggt attgttgatt gctgttatat taatttacat
    13501 gttttcacca cttagtaaaa ttgcgcatgt aaatataaat ggaaataatc acgttagtac
    13561 ttcaaagata aacaaagttt taggtgttaa aaatgattca aggatgtata cgtttagtaa
    13621 aaaaaatgct attaatgatc tcgaagagaa tccattaatc aaaagtgttg agatacacaa
    13681 gcaattacca aacacattaa acgtagatat cacagaaaat gaaattattg ctttagtgaa
    13741 atataaaggt aaatatttac ctttattaga aaatggtaaa ttgcttaaag gttcaaatga
    13801 tgtcaaaatt aatgatgcac ctgtcatgga tggtttcaaa ggtacaaaag aagatgatat
    13861 gattaaggcg ttatctgaaa tgacacctga agttagacga tatattgccg aagtgacata
    13921 cgccccaagt aaaaacaaac aaagcagaat tgaattgttt acgacagatg gacttcaagt
    13981 aatcggtgat atttcgacga tatctaagaa aatgaaatat tatccgcaga tgtcacaatc
    14041 attatcaagg gatagttcgg gtaaactaaa aacacgaggc tatattgatt tatcagtcgg
    14101 tgcttcattt atcccatacc gtggaaacac gtctagtcaa tcagaaagcg ataaaaatgt
    14161 gactaaatca tctcaagagg aaaatcaagc aaaagaagaa ttacaaagcg ttttaaacaa
    14221 aattaacaaa caatcaagta agaataatta aaaaattttg atattgtcta tgtttatagt
    14281 tcacaagcca ttcaacgtat tgtaaactaa ggatagtgta tttttttaat agtaatttgt
    14341 caggaggtgc ctatctatgg aagaacatta ctacgtaagt attgatattg gatcatcaag
    14401 cgtaaaaaca atagtaggcg agaaatttca caatggtata aatgtgatag gtacaggaca
    14461 aacctacacg agcggtataa aaaatggttt aattgatgat tttgatattg cgcgacaagc
    14521 aatcaaagac acaattaaaa aggcatcaat cgcttcgggt gttgatatta aagaagtttt
    14581 cctgaaatta cctatcattg gaacggaagt ttatgatgaa tcaaatgaaa tcgactttta
    14641 tgaggataca gaaatcaacg gttcacatat cgaaaaagta ttagaaggta ttagagaaaa
    14701 aaatgatgtg caagaaacag aagtaattaa tgtgttcccg attcgtttta tagtcgataa
    14761 agaaaatgag gtttcagacc ctaaagaatt aattgccaga cattcattaa aggttgaagc
    14821 aggcgtaatt gctattcaaa aatcgatttt aattaatatg attaaatgcg tagaagcatg
    14881 tggtgttgat gtattagatg tttactctga tgcatataac tatggttcaa tcctaacagc
    14941 tactgaaaaa gagttaggtg catgtgtcat tgatattggt gaagacgtta cgcaagttgc
    15001 tttttatgaa cgcggtgaat tagtagatgc tgattctatc gaaatggcag ggcgtgatat
    15061 tacagacgat attgcacaag gattaaacac ttcttatgaa actgctgaaa aagttaaaca
    15121 ccaatatggt catgcattct atgattctgc ttcagatcaa gatatcttca ctgttgaaca
    15181 ggttgatagt gatgaaacag tacagtatac tcaaaaagat ttgagtgact ttattgaagc
    15241 gcgtgtagaa gaaatattct tcgaagtatt tgatgtttta caagatttag gattaacaaa
    15301 agtaaatggt gggtttattg taactggtgg atctgcaaac ttacttggcg taaaagaatt
    15361 attatcagat atggtaagtg aaaaagttag aattcacacg ccatcacaaa tgggaattag
    15421 aaaacctgaa ttttcttcag caatttctac aatttctagt agtatcgctt ttgatgagtt
    15481 attagattat gttacaatta attatcatga taatgaagaa actgaagaag atgttattga
    15541 tgtgaaagac aaagataacg aatctaaatt aggcggattt gattggttta aacgtaaaac
    15601 aaacaaaaaa gatactcatg aaaatgaagt agagtcaaca gatgaagaaa tttatcaatc
    15661 agaagataat catcaggaac ataaacagaa tcatgaacat gttcaagaca aagataaaga
    15721 taaagaagaa agtaaattca aaaaactaat gaaatctcta tttgaatgat tattggccaa
    15781 taaaactagg aggaaattta aatgttagaa tttgaacaag gatttaatca tttagcgact
    15841 ttaaaggtca ttggtgtagg tggtggcggt aacaacgccg taaaccgaat gattgaccac
    15901 ggaatgaata atgttgaatt tatcgctatc aacacagacg gtcaagcttt aaacttatct
    15961 aaagctgaat ctaaaatcca aatcggtgaa aaattaacac gtggtttagg agcaggagct
    16021 aatcctgaaa tcggtaaaaa agctgcagag gaatctcgtg aacaaattga agatgcaatc
    16081 caaggtgcag acatggtatt tgttacttct ggtatgggtg gcggaactgg tactggtgca
    16141 gcaccagtcg ttgctaaaat tgcaaaagaa atgggcgcat taactgttgg tgttgtaact
    16201 cgtccattta gttttgaagg acgtaaacgt caaactcaag ctgctgctgg agtagaagct
    16261 atgaaagctg cagtagatac attaatcgtt ataccaaatg accgtttatt agatatcgtt
    16321 gacaaatcta cgccaatgat ggaagcattt aaagaagctg acaacgtgtt acgccaaggt
    16381 gtacaaggta tctcagactt aatcgctgtt tctggtgaag taaacttaga ctttgcagac
    16441 gttaagacaa ttatgtctaa ccaaggttct gcattaatgg gtattggtgt ttcttctggt
    16501 gaaaatagag cggtagaagc tgctaaaaaa gcaatctctt ctccattact tgaaacatct
    16561 atcgttggtg cacaaggtgt gcttatgaat attactggtg gcgagtcatt gtcattattt
    16621 gaagcacaag aggctgctga tattgtccaa gatgctgcag atgaagacgt taatatgatt
    16681 ttcggtacag ttattaatcc tgaattacaa gatgagattg ttgtaacagt tattgcaact
    16741 ggttttgatg acaaaccaac atcacatggt cgtaaatctg gtagcactgg attcggaaca
    16801 agcgtaaata cttctagcaa tgcaacttct aaagatgaat cattcacttc aaattcatca
    16861 aatgcacaag caactgatag tgtaagtgaa agaacacata caactaaaga agatgatatt
    16921 cctagcttca ttagaaatag agaagaaaga cgttcaagaa gaacaagacg ttaatcggtt
    16981 aatatatata cacaaataat tcaacacaaa tcatcagata acatatctga tgattttttt
    17041 actaattttt agaacatgta gaaggacatt taagtttttc aaagttatta aaagtgttta
    17101 agtatcgtgt gaaaattaag tcaaaaatta tttgcgcaac attttaactt taaacataaa
    17161 tgttatatta tataattatt aactttgtac agttagacga agataattta aatgaaatga
    17221 tggtgacgat cgagtgaatg ataattttaa aaagcaaccg catcatttaa tatatgaaga
    17281 gttattacaa caaggtatta ctctaggtat tacaactaga ggagatggtt taagtgacta
    17341 tcctaaaaat gcttttaata tggcgagata tattgatgat cgcccatata atattactca
    17401 acatcaattg caattagctg aagaaattgc gtttgataga aaaaattggg tgtttcccat
    17461 tcaaacacat gaaaataaag tcgcttgtat tacaaaggat gatataggca caaatataga
    17521 cactttaact gatgcgcttc atggtattga tgcgatgtac acatatgata gtaatgtctt
    17581 attaacgatg tgttatgcag actgtgtacc agtatatttt tatagtacaa aacatcattt
    17641 tattgcattg gcgcatgcag gttggcgtgg tacctatact gaaattgtaa aagaagtgct
    17701 aaaacatgtg aactttgatt tgaaagactt acatgtcgtt attggaccat ctacatcatc
    17761 aagttatgaa attaatgatg atattaaaaa taaatttgaa acattgccaa ttgatagtgc
    17821 caactatatt gaaactagag gacgagatcg tcatggtatt gatttgaaaa aagccaatgc
    17881 tgcattatta atttattatg gtgttcctaa agaaaatatt tatacgacag cgtatgctac
    17941 atctgaacat ttagaattat ttttctctta tcgattagaa aaaggtcaaa caggacgcat
    18001 gttagcattc attggtcaac agtaaacaag gaggagatat gtttgcgtgt gaaagataat
    18061 ttacaacaaa tctcaacaca aattaatgac aaaagtgaaa aaaataattt ttcaacaaaa
    18121 ccaaacgtga ttgcagttac aaaatatgtt acaatagagc gagctaaaga agcgtatgag
    18181 gctggaataa gacattttgg tgagaataga ttggaaggct tttttcaaaa gaaagaagca
    18241 ttaccatcag atgcggtgat ccattttata ggatcattac aatctcgaaa agttaaggac
    18301 gttataaacg acgtagatta tttccatgct ttagatcgat tgagcttagc caaagaaatt
    18361 aacaaacgtg cagaacataa aattaaatgt ttcttgcaag tgaacgtttc gggagaagct
    18421 tctaaacatg gtattgcttt agaagatgtt gatcagttta tagatgatct taaaaaatat
    18481 gacaaaatcg aaattgtagg tttaatgacg atggcaccat tgacagatga tgaagcatat
    18541 attagatcgt tatttaaaca gttacgtttg aaaaaagaag aaatacaacg actcaattta
    18601 gaatatgcgc cttgtgatga attatcaatg ggaatgagta atgactatct tattgcagtt
    18661 gaagaaggtg cgacgtttgt tagaattggg actaaacttg taggagaaga ggagtgagcc
    18721 acttggcttt aaaagattta tttagtggat tttttgtaat agatgatgaa gaggaagtag
    18781 aagtacctga caaacaacaa caggtaaatg aagcgccagc aaaagagcag tcacaacaaa
    18841 caacaaaaca aaacgcaatc aaatcagtcc ctcaaaaatc tgcatcaaga tatacaacaa
    18901 cgtcagaaga aaggaataac cgtatgtcta attattcaaa aaataattca cgtaatgttg
    18961 taactatgaa caatgctaca ccaaacaatg catcacaaga aagttcaaaa atgtgtttat
    19021 tcgaaccacg tgttttttca gatacacaag atattgctga tgagcttaaa aaccgccgtg
    19081 cgacacttgt caatttacaa cgtattgata aagtatcagc gaaaagaatt attgattttt
    19141 taagcggtac tgtttatgca atcggtggag atatccaacg tgtaggtact gatattttct
    19201 tatgtacgcc tgataatgtg gaagtagctg gaagcattac agaccatatt gaaaatatgg
    19261 aacattcatt cgactaagga gttaacatat ggatataaat gtgctagcta caatatttaa
    19321 attcatcctt tttgttgt
//
LOCUS       DAMQWL010000044        18997 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.044, whole genome shotgun sequence.
ACCESSION   DAMQWL010000044 DAMQWL010000000
VERSION     DAMQWL010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 18997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18997
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.044"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            57..191
                     /locus_tag="PF788_001381"
     CDS             57..191
                     /locus_tag="PF788_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000046022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="delta-lysin family phenol-soluble modulin"
                     /protein_id="HDG6303645.1"
                     /translation="MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
                     "
     gene            complement(788..1573)
                     /locus_tag="PF788_001382"
     CDS             complement(788..1573)
                     /locus_tag="PF788_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen family hydrolase"
                     /protein_id="HDG6303646.1"
                     /translation="MKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWN
                     NGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSG
                     QLINEYDKVHLVPMLREHEFLTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYPAR
                     SGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINP
                     NGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK"
     gene            complement(1998..2402)
                     /locus_tag="PF788_001383"
     CDS             complement(1998..2402)
                     /locus_tag="PF788_001383"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDG6303647.1"
                     /translation="MNTLNLDIVTPNGSVYNRDNVELVVMQTTAGEIGVMSGHIPTVA
                     ALKTGFVKVKFHDGTEYIAVSDGFVEVRKDKVSIIVQTAETAREIDVERAKLAKARAE
                     SHLENDDDNTDIHRAERALERANNRLRVAELK"
     gene            complement(2422..3834)
                     /gene="atpD"
                     /locus_tag="PF788_001384"
     CDS             complement(2422..3834)
                     /gene="atpD"
                     /locus_tag="PF788_001384"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDG6303648.1"
                     /translation="MGIGRVTQVMGPVIDVRFEHNEVPKINNALVIDVPKEEGTIQLT
                     LEVALQLGDDVVRTIAMDSTDGVQRGMDVKDTGKEISVPVGDETLGRVFNVLGETIDL
                     KEEISDSVRRDPIHRQAPAFDELSTEVQILETGIKVVDLLAPYIKGGKIGLFGGAGVG
                     KTVLIQELINNIAQEHGGISVFAGVGERTREGNDLYFEMSDSGVIKKTAMVFGQMNEP
                     PGARMRVALSGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQP
                     TLATEMGQLQERITSTTKGSVTSIQAVFVPADDYTDPAPATAFAHLDATTNLERKLTE
                     MGIYPAVDPLASTSRALEPSIVGQEHYEVARDVQSTLQKYRELQDIIAILGMDELSDE
                     DKQTVERARRIQFFLSQNFHVAEQFTGQKGSYVPVKTTVANFKDILDGKYDHIPEDAF
                     RLVGSMDDVIAKAKDMGVEV"
     gene            complement(3856..4722)
                     /locus_tag="PF788_001385"
     CDS             complement(3856..4722)
                     /locus_tag="PF788_001385"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500821.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDG6303649.1"
                     /translation="MASLKEIDTRIKSTKKMKQITKAMNMVSSSKLRRAEKNTKQFTP
                     YMDKMQDAITAVAGASSNTNHPMLRPRKITRSGYLVITSDKGLAGAYSANVLKKLITD
                     IEAKHQDSSEYSIVVLGQQGVDFLKNRGYDIEYSQVDVPDQPSFKSVQALANHAIDLY
                     SEEEIDELNIYYSHYVSVLENKPTSRQVLPLSQEDSSKGHGHLSSYEFEPDKESILSV
                     ILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQ
                     ITEIVGGSAALE"
     gene            complement(4753..6261)
                     /locus_tag="PF788_001386"
     CDS             complement(4753..6261)
                     /locus_tag="PF788_001386"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDG6303650.1"
                     /translation="MAIKAEEISALLRSQIENYESEMSVTDVGTVLQIGDGIALIHGL
                     NDVMAGELVEFHNGVLGLAQNLEESNVGVVILGPYTGITEGDEVKRTGRIMEVPVGEE
                     LIGRVVNPLGQPIDGQGPINTTKTRPVEKKATGVMDRKSVDEPLQTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTIAIDTILNQKDQGTICIYVAIGQKDSTVRANVEKLRQAGAL
                     DYTIVVAASASEPSPLLYIAPYSGVTMGEEFMFNGKHVLIVYDDLTKQAAAYRELSLL
                     LRRPPGREAYPGDVFYLHSRLLERAAKLNDDLGGGSITALPIIETQAGDISAYVPTNV
                     ISITDGQIFLQSDLFFSGVRPAINAGQSVSRVGGSAQIKAMKKVAGTLRLDLASYREL
                     ESFAQFGSDLDEFTASKLERGKRTVEVLKQDQNKPLPVEHQVLIIYALTKGYLDDIPV
                     VDITRFEDELNHWAESNATELLNEIRETGGLPDAEKFDTAINEFKKSFSKSE"
     gene            complement(6283..6822)
                     /locus_tag="PF788_001387"
     CDS             complement(6283..6822)
                     /locus_tag="PF788_001387"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDG6303651.1"
                     /translation="MVKVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLR
                     MVDSNPTQTAEQRRELINGVFTDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGH
                     YNQDFATIESTYELSQEELDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVL
                     DGSVRNDLVQLQRKFRRVN"
     gene            complement(6822..7343)
                     /locus_tag="PF788_001388"
     CDS             complement(6822..7343)
                     /locus_tag="PF788_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDG6303652.1"
                     /translation="MTETANLFVLGAAGGVEWGTVIVQVLTFIVLLALLKKFAWGPLK
                     DVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQE
                     QIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQK
                     ALVDKYLKEAGDK"
     gene            complement(7541..7753)
                     /gene="atpE"
                     /locus_tag="PF788_001389"
     CDS             complement(7541..7753)
                     /gene="atpE"
                     /locus_tag="PF788_001389"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDG6303653.1"
                     /translation="MNLIAAAIAIGLSALGAGIGNGLIVSRTVEGVARQPEARGQLMG
                     IMFIGVGLVEALPIIGVVIAFMTFAG"
     gene            complement(7796..8524)
                     /gene="atpB"
                     /locus_tag="PF788_001390"
     CDS             complement(7796..8524)
                     /gene="atpB"
                     /locus_tag="PF788_001390"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDG6303654.1"
                     /translation="MDHKSPLVSWNLFGFDIVFNLSSILMILVTAFLVFLLAIICTRN
                     LEKRPTGKQNFVEWIFDFVRGIIEGNMAWKKGGQFHFLAVTLILYIFIANMLGLPFSI
                     VTKDHTLWWKSPTADATVTLTLSTTIILLTHFYGIKMRGTKQYLKGYVQPFWPLAIIN
                     VFEEFTSTLTLGLRLYGNIFAGEILLTLLAGLFFNEPAWGWIISIPGLIVWQAFSIFV
                     GTIQAYIFIMLSMVYMSHKVADEH"
     gene            complement(8545..8997)
                     /locus_tag="PF788_001391"
     CDS             complement(8545..8997)
                     /locus_tag="PF788_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDG6303655.1"
                     /translation="MNRIDTTNRLYYHLVCMSGTVFMIDISHTEAYKMSRFYNIFKQF
                     IQYYFYLIIILGGLYLYTHHAFILGLIIGVTGSAINTCIFECYLAKAKRPDTMHISTG
                     NMWRYLVAIIACMIWYLNKAHVSIIGIIIGLMISYVVVIIRPLLKVSK"
     gene            complement(9065..10192)
                     /gene="wecB"
                     /locus_tag="PF788_001392"
     CDS             complement(9065..10192)
                     /gene="wecB"
                     /locus_tag="PF788_001392"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDG6303656.1"
                     /translation="MKKIMTIFGTRPEAIKMAPLVKALEQEKMLEPIVVVTAQHREML
                     DSVLSTFEIKPKYDLNIMKSGQTLSEITSKSITQLEQVIQLEKPDMVLVHGDTMTTFA
                     GGLAAFYNQVPIGHVEAGLRSYDKYSPFPEEVNRQLVGVLADLHFAPTKNAASHLLSE
                     GKYSESVVVTGNTAIDAMKYTVDDNYKSNIMDKYHDKKFILMTAHRRENIGKPMENIF
                     KAVRRLIDEYTDLALVYPMHKNPKVREVAQKILGSHDRIELIEPLDVVDFHNFAKKSY
                     FILTDSGGIQEEAPSFNKPVLVLRSVTERPEGVEAGTLKVIGTNKQNVYQAAKELIDD
                     ERLYHQMSEASNPYGDGFASERIVNHIKYYLNLITEKPSDF"
     gene            complement(10216..10845)
                     /gene="upp"
                     /locus_tag="PF788_001393"
     CDS             complement(10216..10845)
                     /gene="upp"
                     /locus_tag="PF788_001393"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDG6303657.1"
                     /translation="MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEV
                     TRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGL
                     YRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCL
                     IAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK"
     gene            complement(10873..12111)
                     /locus_tag="PF788_001394"
     CDS             complement(10873..12111)
                     /locus_tag="PF788_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDG6303658.1"
                     /translation="MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQG
                     SVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVY
                     LVALGMGDTVLGMNLSHGGHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLAL
                     EHKPKLIVAGASAYSRTIDFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYAD
                     FVTTTTHKTLRGPRGGMILCKEEYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALEN
                     NFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDS
                     VGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVAKIISLALKNSKDEE
                     KLQQAKERVAKLTAEYPLYQ"
     gene            complement(12138..12662)
                     /locus_tag="PF788_001395"
     CDS             complement(12138..12662)
                     /locus_tag="PF788_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01440 family protein"
                     /protein_id="HDG6303659.1"
                     /translation="MKDLTMLLDELKDMSFFNKGDICLIGCSTSEVIGEKIGTVGSME
                     VAETIFNALDVVSKETGVTFAFQGCEHINRAITIEKSQYNPLTMEEVSVVPDVHAGGS
                     LATYAFQHMKDPIVVEHITVPCGIDIGQTLIGMHIKHVCVPVRTSVKQVGQAIVTIAT
                     SRPKKIGGERAKYQ"
     gene            complement(12769..13188)
                     /locus_tag="PF788_001396"
     CDS             complement(12769..13188)
                     /locus_tag="PF788_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight protein arginine
                     phosphatase"
                     /protein_id="HDG6303660.1"
                     /translation="MKILFVCTGNTCRSPLAESIAKEVMPNHQFESRGIFAVNNQGVS
                     NYVEDLVEEHHLAETTLSQQFTEADLKADIILTMSYSHKELIEAHFGLQNHVFTLHEY
                     VKEAGEVIDPYGGTKEMYVHTYEELVSLILKLKDIIC"
     gene            complement(13185..14231)
                     /locus_tag="PF788_001397"
     CDS             complement(13185..14231)
                     /locus_tag="PF788_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006190783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDG6303661.1"
                     /translation="MDTKIWDVREYNEDLQQYPKINEIKDIVLNGGLIGLPTETVYGL
                     AANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLDPRVEKLMQAFWPGPI
                     SFILPLKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQIINEPLAAPSANLSGRPSPTT
                     FNHVYQDLNGRIDGIVQAEQSEEGLESTVLDCTSFPYKIARPGSITAAMITEILPNSI
                     AHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGNDGKDWSSIAFIVPSNKVAF
                     IPSEAQFIQLCQDDNDVKQASHNLYDVLHSLDENENISAAYIYGFELNDNTEAIMNRM
                     LKAAGNHIIKGCEL"
     gene            complement(14315..15151)
                     /gene="prmC"
                     /locus_tag="PF788_001398"
     CDS             complement(14315..15151)
                     /gene="prmC"
                     /locus_tag="PF788_001398"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000248725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDG6303662.1"
                     /translation="MVNYKEKLDEAIHLTQQKGFEQTRAEWLMLDVFQWTRTDFVVHM
                     HDDMPKAMIMKFDLALQRMLLGEPIQYIVGFASFYGRTFDVNSNCLIPRPETEEVMLH
                     FLQQLEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQI
                     QFLTGDALKPLINEGIKLNGLISNPPYIDEKDMVTMSPTVTRFEPHQALFADNHGYAI
                     YESIIEDLPHVMEKGSPVVFEIGYNQGEALKSIILNKFPDKKIDIIKDINGHDRIVSF
                     KW"
     gene            complement(15138..16214)
                     /gene="prfA"
                     /locus_tag="PF788_001399"
     CDS             complement(15138..16214)
                     /gene="prfA"
                     /locus_tag="PF788_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDG6303663.1"
                     /translation="MFDQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKT
                     VDVYRNYKAKKEELADIEEMLSETDDKEEVEMLKEESNGIKAELPNLEEELKILLIPK
                     DPNDDKDVIVEIRAAAGGDEAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKE
                     ISFSVSGNGAYSKLKFENGAHRVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNE
                     DLKIDTYRSSGAGGQHVNTTDSAVRITHLPTGVIATSSEKSQIQNREKAMKVLKARLY
                     DMKVQEEQQKYASQRKSAVGTGDRSERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHL
                     EEIIDALTLSEQTDKLKELNNGEL"
     gene            complement(16215..16814)
                     /locus_tag="PF788_001400"
     CDS             complement(16215..16814)
                     /locus_tag="PF788_001400"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDG6303664.1"
                     /translation="MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP
                     AIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVE
                     KLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLIN
                     GKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL"
     gene            complement(17161..17415)
                     /locus_tag="PF788_001401"
     CDS             complement(17161..17415)
                     /locus_tag="PF788_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDG6303665.1"
                     /translation="MKQGIHPEYHQVIFLDTTTNFKFLSGSTKTSSEMMEWEDGKEYP
                     VIRLDISSDSHPFYTGRQKFAAADGRVERFNKKFGLKSNN"
     gene            complement(17533..18849)
                     /gene="rho"
                     /locus_tag="PF788_001402"
     CDS             complement(17533..18849)
                     /gene="rho"
                     /locus_tag="PF788_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDG6303666.1"
                     /translation="MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKK
                     ELVLAIMEAQMEKDGNYYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEI
                     KRGDKVTGKVRKPKDNEKYYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLET
                     ETQNYSTRIMDLVTPIGLGQRGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVG
                     ERPEEVTDLERSVEAAEVVHSTFDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSI
                     TRLARAYNLVIPPSGRTLSGGLDPASLHKPKAFFGAARNIEAGGSLTILATALVDTGS
                     RMDDMIYEEFKGTGNMELHLDRKLSERRIFPAIDIGRSSTRKEELLISKSELDTLWQL
                     RNLFTDSTDFTERFIRKLKRSKNNEDFFKQLQKSAEESTKTGRPII"
BASE COUNT         5692 a         3762 c         2848 g         6695 t
ORIGIN      
        1 tgcttttagc atgttttaat ataactagat cacagagatg tgatggaaaa tagttgatga
       61 gttgtttaat tttaagaatt tttatcttaa ttaaggaagg agtgatttca atggcacaag
      121 atatcatttc aacaatcggt gacttagtaa aatggattat cgacacagtg aacaaattca
      181 ctaaaaaata agatgaataa ttaattactt tcattgtaaa tttgttatct tcgtatagta
      241 ctaaaagtat gagttattaa gccatcccaa cttaataacc atgtaaaatt agcaagtgag
      301 taacatttgc tagtagagtt agtttccttg gactcagtgc tatgtatttt tcttaattat
      361 cattacagat aattatttct agcatgtaag ctatcgtaaa caacatcgat ttatcattat
      421 ttgataaata aaattttttt cataattaat aacatcccca aaaatagatt gaaaaaataa
      481 ctgtaaaaca ttcccttaat aataagtatg gtcgtgagcc cctcccaagc tcgcggcctt
      541 ttttgtaatg aagaagggat gagttaatca tcattatgag acccgccgtt aaaatatatg
      601 aataagtcta atgttggaaa aggtcaaaaa attaatcaat ttaattaaga aaatcattca
      661 tttgcaaagg gcgaaatggg ttcttactga gttatctatt ataaaaaaat aaacatagac
      721 ttatgaaaaa tctctcataa atctatgttt agtcatgaca tgtgttaaat attatttcgg
      781 gcgcttctta tttatacaaa tctaatttaa tacttttaaa tacaggtata ttttcgcgtt
      841 gctgttctac ttcatttaag tttaaatcta cagtcaaaat atctgcggat tcatttaatt
      901 ctccaactaa atctccattt gggtttataa ctatcgaatg accagcatat tctgtgttac
      961 catcgaatcc agtgctatta gttccaatga caaacatatt attttcaatt gcacgtgcct
     1021 ttagtaatga atgccaatgt tgaagacgtg acataggcca ttgcgccaca taaaatgcaa
     1081 ttttagcacc actacgagca ggatatctta ataattctgg aaaacgtaaa tcataacaga
     1141 taagttgggt cacataagta ccgtcagaca attgaaaggg ttcagctacg tattcgccag
     1201 cggttaaaaa ttcatgctct cttaacatag gaactaaatg aactttgtcg tattcattaa
     1261 tcagctggcc acttttattc acactaaaag ctgtattaaa tatttgattg tttctaatgt
     1321 tagaaactga cccagctacg atatcgactt tatatttttc agctaaatgt ttaataaatg
     1381 aaaaactttg tcctagatta ttatctgctt tttcatttaa atgctctaaa tcatagccat
     1441 tattccacat ttcaggtaaa acgactacat ctacttcagc attcatattt ttttcgaacc
     1501 attgcgttat ttgagtttca tttttagaac tatctccaaa aacaatcggt aattgataaa
     1561 tttggacttt cataacatca catccttgat agatcttata tataacttac taaaagttat
     1621 gttgaaacgc aaaaaacgag cacaagacat aaaatcaaag tcctaggctc tacaaagtta
     1681 tattgacagt agttgatggg gccccaacat agagaaattg gaacaccaat ttctacagac
     1741 aatgcaagtt ggggtgggct ctaacataaa gaaatacttt ttctttagaa attagtattt
     1801 cttatacatg agttttactc atgtattcct atttttaaat acacattagc tgtgtttaat
     1861 gataaagaac cactacatca taaatcttta atggttcttt atcaattcct tcccccctct
     1921 catgttttgt atctttaaat caatataatt caaaaaaggg tcgaagatat gaaatcacat
     1981 cttcgaccct ttatttacta ttttaattca gccacacgca aacggttatt tgctctctct
     2041 aaagctcttt cggctctatg aatatcagta ttgtcgtcat cattttccaa gtgagactct
     2101 gctcttgctt tggctaattt agctctttca acatcaattt ctcttgcagt ttctgcagtc
     2161 tgaacaatga ttgaaacttt atcttttcta acttcaacaa agccatcgct tacagcaata
     2221 tattcagttc catcgtgaaa tttcactttt acaaagcctg tttttaaagc agctacagtt
     2281 ggaatatgtc cactcatgac acctatctca ccagctgttg tttgcataac aacgagttca
     2341 acattatcac gattgtaaac agaaccatta ggagtgacaa tatctaggtt taatgtattc
     2401 attatccatt cctcctaatt gttatacttc aacacccata tctttagctt ttgcaataac
     2461 atcatccatg ctaccaacta aacggaatgc atcttctgga atatggtcat atttaccatc
     2521 taagatatct ttaaagtttg caactgttgt cttaacaggt acataagaac ctttttgacc
     2581 agtaaattgt tccgctacgt ggaagttttg agataagaag aattgaattc tacgtgcgcg
     2641 ttcaactgtt tgtttatctt catcagataa ttcgtccata cctaagatag caatgatatc
     2701 ttgtaattca cggtattttt gaagtgttga ttgtacatca cgagctactt cataatgttc
     2761 ttgacctaca attgatggtt ccaatgctct tgatgtagac gctaatggat ccacggctgg
     2821 ataaataccc atttcagtta atttacgttc taagtttgta gttgcatcta aatgggcaaa
     2881 cgctgtcgca ggcgctgggt cagtatagtc atcggcaggt acgaataccg cttgaataga
     2941 agtaactgat ccttttgttg tagacgtaat acgttcttgt aattgtccca tttcagtagc
     3001 aagtgttggt tggtaaccta ctgcagaagg catacgacct aataatgcag atacctcaga
     3061 accagcttgt gtaaatctga aaatgttatc gatgaataat aatacgtctt gaccttgttc
     3121 gtcacggaaa tattcagcca ttgttaaacc agataatgca acacgcatac gtgcaccagg
     3181 tggctcattc atttgcccga ataccatggc tgttttctta attacaccac tgtcactcat
     3241 ttcgaagtat aaatcgttac cttcacgagt acgttcacct acaccggcga atacagaaat
     3301 accaccgtgc tcttgagcga tgttgttaat taattcttgg attaatactg ttttacctac
     3361 accggcacca ccgaacaatc cgattttacc acctttaata taaggtgcta gtaaatctac
     3421 tactttaata cctgtttcta aaatttgaac ttctgttgaa agttcatcga atgctggtgc
     3481 ttgacgatgg ataggatcgc ggcgaacaga atcactaatt tcttctttaa ggtcaattgt
     3541 ttcacctagt acattaaata cacgacctaa tgtttcgtca ccaacaggta cactaatttc
     3601 tttgcctgta tcttttacat ccatgcctct ttggacacca tcagttgaat ccatcgcaat
     3661 tgtacgaaca acgtcgtcac ctaattgcag cgcaacttct aatgttagtt gtattgtacc
     3721 ttcttcttta ggcacatcaa taaccaaggc gttattaatt ttaggaactt cgttatgttc
     3781 aaatcgaaca tcaattacag gacccataac ttgagttaca cggccaattc ccatgctatt
     3841 ttcctccttt aaatattatt caagcgctgc ggaaccacca acaatttcag taatttgttg
     3901 cgtaatttct gcttgtctcg ctctgttata ttctaatgat aagtcatcaa taagttcagt
     3961 tgcattatca gtggcatttt tcatcgcagt catacgtgtt gcatgctcac ttgcttttgc
     4021 gtctaatatt gttccgtaaa tcaaactctc aacatattga ggcaagatta cacttaagat
     4081 agattcttta tctggctcaa attcataaga agacaaatga ccatgcccct tactagaatc
     4141 ctcttgagat aatggtaata cttgtctaga tgtaggcttg ttttcaagaa cgctgacata
     4201 atgactatag tatatattta attcatcaat ttcttcttca ctgtataagt ctatagcatg
     4261 gttagctagt gcttgaacag atttgaaaga aggttgatca ggtacgtcta cttgagaata
     4321 ctcaatgtca taacctctat tttttaggaa atcaacacct tgttgcccta aaactacaat
     4381 actgtattcg ctactatctt gatgtttcgc ttcaatatca gtaatcaatt ttttaagcac
     4441 gtttgcacta tatgcacctg ctaaaccttt atcactcgtg ataactaaat atccacttct
     4501 agtaatttta cgaggtctta gcattggatg gtttgtattg ctacttgccc ctgcaactgc
     4561 agtaattgca tcttgcattt tatccatata tggtgtgaat tgttttgtat ttttttcagc
     4621 tctacgaagt tttgaacttg ataccatgtt catcgctttc gtaatctgct tcattttttt
     4681 ggttgatttt attcgagtat ctatttcttt aagagaagcc actatctcac caccttatac
     4741 taaacttgtt tattattcag atttgctaaa gctttttttg aattcgttaa ttgctgtgtc
     4801 aaacttctca gcatctggta agccaccagt ttctctgatt tcatttaaca gttcagtagc
     4861 atttgattct gcccagtggt ttaactcgtc ttcaaaacgt gtgatatcta caactggaat
     4921 atcatctaaa tatccttttg ttaatgcata aataatcaac acttggtgtt cgactggtaa
     4981 tggtttgttt tgatcttgtt ttaagacttc aacagtacgt ttaccacgtt ctaatttact
     5041 tgcagtaaat tcatcaaggt ctgaaccgaa ttgtgcaaat gattcaagtt ctctgtatga
     5101 cgctaagtca agacgtaacg taccagcaac tttcttcatt gctttaattt gtgcagatcc
     5161 accaacacga gatacagatt gtccggcatt aatcgctggt cttacacctg agaagaataa
     5221 atcagattgt aagaagattt gtccatctgt aattgaaata acgtttgttg gtacataagc
     5281 tgaaatatca ccagcttgtg tttcgataat tggtaatgca gtaattgaac cgccacctaa
     5341 gtcatcgttt aattttgctg ctctttctaa taatctacta tgtaagtaga atacgtcacc
     5401 tgggtatgct tcacgacctg gaggtctacg taataataat gataactcac gataagctgc
     5461 tgcttgttta gttaaatcat cataaacgat taaaacatgt ttaccgttaa acatgaattc
     5521 ttcacccatt gttacacctg aatatggtgc aatatataat aatggagaag gttcagaagc
     5581 tgatgctgct acaacaatag tgtagtctaa agcgcctgct tgtcttaact tttcaacatt
     5641 tgctcttact gttgaatctt tttgaccaat agcaacatag atacaaatcg taccttgatc
     5701 tttttggttc aaaattgtgt caattgcaat tgttgtttta cctgtttgac ggtcaccgat
     5761 gattaactca cgttgacctc taccaattgg tactaaagca tcaattgctt tgatacctgt
     5821 ttgtaatggc tcatctactg atttacgatc cattacacca gtagcttttt tctctactgg
     5881 acgtgtttta gttgtgttaa tcggtccttg tccatcaata ggttgtccta atggattaac
     5941 aactcttccg attagttctt cacctactgg tacttccatg atacgaccag tacgtttaac
     6001 ttcgtcacct tcagtaatac ctgtgtatgg tcctaaaata accacaccca cgtttgactc
     6061 ttcaaggttt tgggctaaac caagtacgcc gttatggaat tctactagct caccagccat
     6121 aacgtcattt aatccgtgaa ttaatgcaat accatcacca atttgtaata cagtacctac
     6181 atcagttacg gacatttctg actcataatt ttcaatttgt gagcgaagta atgcactgat
     6241 ttcttcagct tttatggcca tctatgtcac tcctctttat aattaattaa ctcttctaaa
     6301 ttttctttgt aattggacaa gatcatttct aacactacca tctaatacag ttgtgccgac
     6361 tttaactcta aatccaccaa ttaaatctgg attaattttt gtatctacaa taactttaga
     6421 taacttcgtt tgttgagtta ctagtttgac aatcttatct aactcttctt gactcaattc
     6481 atatgttgac tcaattgttg caaaatcttg attgtagtgt ccgttatata agctttggaa
     6541 cgccttgaat acgtcagcta ttaatgagat atgtctatta tctgctaaca cgtacatcat
     6601 atttttaatg tatggattaa tgtcagtaaa tacaccatta atcaactcac gacgttgttc
     6661 tgctgtttga gttggattac tgtcaaccat tctcaattgc tcaattttat cttttactgc
     6721 ttcatttata actgttaatt cttcattaat agtctctaaa ttatttgtat ctaatgacac
     6781 gtcaaataat gctttagcat acttgttagc tacttttacc attatttatc gcctgcctct
     6841 tttagatact tgtcaaccaa tgctttttgg tcttgttcag aaatttcttt tctaagaact
     6901 ttagaagcaa ttaacactga tagttcagat acttgattat taatatctgc aatggcacgt
     6961 tctttttggc tattgatttc actttgtgct gtttcaatca taccgtttgc acgtacgttt
     7021 gcttcatgaa taatttgttc ttgctgttga cgtgcttgaa ccttagcatc ttctaaaatc
     7081 ttttgaactt cttcttgtgt ttctttaagt ttttgtttat tttcttcttc aagtttctgt
     7141 gcatttaact tagcttgttc tgcgtcatcg atatctctgt taatatctct ttcacgttta
     7201 tccattacat ctttcaatgg accccatgcg aactttttaa gtaacgcaag taacacgatg
     7261 aaagttagga cctgtacaat cacagtaccc cactcaacgc ctccagctgc accaagaacg
     7321 aataagttag ctgtttcagt cacgggttca tgacactcct ttcattaaaa taatcgctag
     7381 tgttatatag aaaaaaacga cgaggttagg acctactgaa tttatgcgat aggcatggtg
     7441 cgttcatatc tcaactattt aataaagttc aaagatatta ctatatatgc atcatgaatt
     7501 atgtcctatg cgctttgtcc cgacctcttt tatctgttaa ttatccagca aatgtcatga
     7561 atgcaattac tacaccgatg ataggtaatg cctcaactaa acctacacca atgaacatga
     7621 tacccattaa ttgaccacgt gcttctggtt gacgtgctac accttcaact gttcttgaaa
     7681 cgattaaacc gttaccgata cctgctccta atgctgataa accaattgcg attgctgctg
     7741 cgattaaatt cataatttaa tttcctcctg tgattgtata taattattga aatttttagt
     7801 gttcatctgc cactttatgt gacatataaa ccatcgaaag cataataaag atatatgctt
     7861 ggattgttcc tacaaatatt gaaaatgctt gccaaacaat taatcctggg atactaataa
     7921 tccaacccca tgctggttcg ttaaagaata agccagcaag taatgttaat agtatctcac
     7981 ctgcaaatat gttaccgtac aaacgcagac caagcgttaa tgttgaagtg aactcttcaa
     8041 aaacattaat aattgccaat ggccaaaacg gctgtacata acctttaaga tattgtttcg
     8101 taccacgcat tttaattcca taaaagtgag ttaacagtat tatcgttgta gacaacgtta
     8161 aagtcactgt tgcatcagct gtcggtgatt tccaccacaa tgtgtgatct ttcgttacta
     8221 tagaaaacgg aagacctaac atattagcta taaaaatgta cagaatcagc gttactgcta
     8281 agaagtggaa ttgaccacct tttttccaag ccatgttacc ttcaatgatt cccctcacga
     8341 aatcaaaaat ccattcaacg aaattttgtt tgccagttgg tcttttttcc aaattacgcg
     8401 tacaaatgat agcaagtaga aaaacaagaa acgccgtaac aagtatcatc aatatacttg
     8461 ataaattgaa aacgatatca aaaccgaata aattccaact cacgagcggg gatttgtgat
     8521 ccataatctc acctctttct taatttattt gctcaccttt agtaaaggac gtatgataac
     8581 tacaacatat gaaatcatta aaccaataat tataccgatg atacttacat gcgctttatt
     8641 aaggtaccaa atcatacagg caataattgc aactaagtat cgccacatat ttccagttga
     8701 aatatgcata gtgtctggtc ttttagcttt agctaaatag cattcaaaaa tacatgtgtt
     8761 gattgcagaa ccagtaacac caatgattaa tcctaagata aatgcatggt gtgtataaag
     8821 gtataatcct cccaatatta ttattagata aaaataatat tgaatgaact gtttaaaaat
     8881 gttgtagaaa cgactcattt tatatgcctc cgtgtgactg atatcaatca tgaaaaccgt
     8941 tccactcata caaactaaat gataatatag gcgatttgtg gtgtcaattc tattcaaatt
     9001 gttgtaaaaa aataagcata gttagacaca atttagacac aattagacaa aaagtctatt
     9061 ttcctcagaa atcgcttggt ttttcagtga ttaaattcaa ataatactta atatgattaa
     9121 ctattctttc tgaagcaaat ccatcaccgt aaggattaga tgcttcagac atttgatgat
     9181 ataatctctc atcatcgatt aattcttttg cagcttgata cacattttgc ttatttgttc
     9241 caatgacttt taatgtgcca gcttcaacac cttcaggacg ttctgtaaca cttcgcaaaa
     9301 ctaaaactgg cttattaaat gatggcgctt cttcctgaat tccacctgaa tctgtcaaaa
     9361 taaaataaga ttttttagca aaattatgga aatctactac gtccaaaggt tcaatcaatt
     9421 caattctgtc atgactacct aaaatctttt gagccacctc tcgaactttc gggtttttat
     9481 gcattggata taccagtgct aaatcagtat actcatctat taagcgtcta accgctttaa
     9541 atatattttc catgggtttc ccgatatttt ctcgtcggtg tgctgtcata agaatgaatt
     9601 ttttgtcatg gtatttatcc atgatgttag atttataatt gtcatcaact gtatatttca
     9661 tagcatcaat cgcagtatta ccagtgacaa caacactttc tgaatatttc ccttcactta
     9721 acaaatgcga tgcagcattt ttagtaggtg caaaatgtaa gtcagctaat acaccaacta
     9781 attgtctatt cacctcttct ggaaaaggtg aatatttatc ataacttcta agccctgctt
     9841 caacgtgtcc aatcggcact tggttataaa atgccgctaa accacctgca aatgtcgtca
     9901 tcgtatcacc atgtacaagt accatgtctg gtttttctaa ttgaatcact tgttctaatt
     9961 gagtgattga tttagaagtt atctcagaaa gtgtctgtcc tgatttcata atattcaaat
    10021 cgtattttgg tttgatttca aaggtactta atactgaatc aagcatttct ctatgctgtg
    10081 ctgtaacaac aacaattggc tcgagcattt tttcttgttc caaagcttta actaaaggag
    10141 ccatctttat ggcttcgggt cttgttccaa atatggtcat aatctttttc atcaaactac
    10201 ttatctccga ttcttctatt tagtaccaaa caatctatct ccagcgtcgc ctaaccctgg
    10261 tgtgatatat gctttgtcat ttagcttttc atcaagtgca gcaatataaa tatctacatc
    10321 tggatgtgct tcatgcatct tttctacgcc ttctggtgct gcaattaaac acatgaagcg
    10381 aatattttta gcgccacgtt tcttcaatga agtaatagct tcaattgctg atgcgcctgt
    10441 tgctaacata ggatcaacaa caatgatttg tctttcagta atatcttgag gtaacttagc
    10501 aaaatactct acagccttta atgtttcggg atctcgatat aaaccgatat gtccaactct
    10561 ggctgcaggt actaaactta aaataccatc agtcatacct aaaccagctc ttaaaattgg
    10621 aacgatagct aattttttac cagctaatcg tttagccgtc attttagtta caggcgtttc
    10681 aatatcaaca tcctgaagct ctaagtctct agttacttca tatgccatca acataccaac
    10741 ttcgtctaca agttctctaa attctttagt acctgtattt acatctctaa tatagcttag
    10801 tttgtgttga attaatggat gatcgaaaac gtgtacttta ctcataaaaa ttactcctat
    10861 ctttgtgtat gtttattgat atagaggata ttcagctgtt aatttcgcaa cgcgttcttt
    10921 agcttgttgt aatttttctt catctttact atttttcaat gctaaactga tgatttttgc
    10981 aacttcctca aaagcttttt catcaaatcc acgcgttgtt gcagcaggtg tacctaaacg
    11041 tataccactc gttacaaaag gtttttcttg atcgaacgga atggtatttt tgttacatgt
    11101 gataccaact gaatctaaag tctcttcagc ttctttacca gtaagtccta tagacccttt
    11161 tacatcaaca gctactaagt gattatctgt accgccagaa acaattctaa atccttcatt
    11221 aattaatgct tctgcaagaa cttttgcgtt tttaaccact tgttgttgat acgttttgaa
    11281 attattttct aacgcttctc caaaagcaac tgcttttgct gcaataacat gctcaagagg
    11341 tccaccttga ataccaggga aaattgtttt atctatgtct tttttatatt cttccttaca
    11401 taaaatcata ccaccacgtg gtccgcgtaa tgttttgtgt gttgtagttg ttacaaaatc
    11461 agcatattct actggatttg gatgtaaacc tgccgctact aatcctgcaa tatgtgccat
    11521 gtctaccatt aacttagcgt ttacttcatc tgcgatttct ttaaactttt tgaagtcaat
    11581 tgttcttgaa tatgctgatg ctcctgccac aataagctta ggcttatgct ctaacgctaa
    11641 tttacgaact tcatcataat tgattcgttc tgtgtcttta tctactccat attcaacgaa
    11701 attgtagaat ttaccactaa aattaacagg cgctccatgt gtcaagtgac caccatgact
    11761 caaattcata cctaaaactg tgtcgcccat tcctaatgca actaagtaaa cagccatgtt
    11821 cgcttgtgaa cctgaatgtg gttgaacatt gacatgttca gctccaaaca atgctttagc
    11881 acgatcaatt gcgatgcttt cagtaacatc tacaaactca cagccaccat aatatcggcg
    11941 tcctggatag ccttcagcat acttattagt caacactgaa ccttgtgctt ccataaccgc
    12001 ttccgataca aaattttccg atgcgattaa ctctatgttg ctattttgtc tctgaaattc
    12061 tctctcgatt gcttctgcga taactttatc ttgcttggtg atataagaca taaaatctcc
    12121 ccttctttca aaaaaactta ttggtattta gcacgttcgc caccaatctt tttcggccta
    12181 gatgtggcaa tagttacaat tgcctgtcct acttgcttta ctgaggtcct tacaggtaca
    12241 catacatgct taatatgcat gcctattaac gtttgaccaa tatcaattcc acaaggaaca
    12301 gtaatatgtt cgaccacgat cggatccttc atatgctgaa aagcgtatgt tgccaaactc
    12361 cctccagcat gtacatctgg aacgacggaa acttcttcca ttgttaatgg attatactga
    12421 gatttttcta ttgttatcgc tctgttgata tgttcacatc cttgaaaagc aaaagtaacg
    12481 cctgtctctt tactcacaac atctaatgca ttaaaaatag tttctgcaac ttccatcgaa
    12541 ccgacagtcc ctattttttc gccaatgact tccgatgttg aacatccaat taaacatata
    12601 tctcctttat taaaaaagga catatctttt aattcgtcta ataacattgt caaatctttc
    12661 ataaaagccc acccttccta aaaataaaaa aggaatatag caaagtgcta cactcctcta
    12721 ttataactta tttaactgtt aacatatact aattatacag aattcctact agcaaataat
    12781 atcttttaat tttaaaatta aacttacaag ttcttcatag gtatgtacat acatttcttt
    12841 tgttccaccg tatggatcta taacttctcc tgcttctttt acatattcat gcaatgtgaa
    12901 aacatgattt tgcaaaccaa agtgtgcctc tattaattct ttgtgcgaat acgacatcgt
    12961 caaaataata tctgctttca aatctgcttc agtaaattgt tgcgataagg tcgtttcagc
    13021 taaatgatgt tcttcaacta agtcttcaac ataattcgaa acaccttgat tgttcacagc
    13081 gaatatacct cttgattcaa attgatgatt tggcataacc tcttttgcaa tactttccgc
    13141 taatgggcta cgacatgtgt tacctgtaca aacgaataaa atcttcatag ttcacatcct
    13201 ttaataatgt gattacctgc agcttttaac atgcgattca taattgcttc tgtattatca
    13261 ttcagctcaa agccgtatat atacgccgct gaaatatttt cattttcatc aagtgaatgt
    13321 aacacatcat aaagattatg acttgcttgt ttaacatcat tgtcatcctg acataattga
    13381 atgaattgcg cttcacttgg tataaacgcc accttattac tcggcacaat aaaagctata
    13441 gaagaccaat ctttaccgtc atttccaatt ttgctctcaa tatctgtaat aattgtaagt
    13501 ggtgtattgg gtgagtaatg cttatacttc atacctggtg caattggctg ttcagtatca
    13561 ttataatcag catgggcgat actattcgga agtatttctg taatcattgc tgctgttata
    13621 gaaccaggtc ttgcaatttt ataaggaaaa gatgtgcaat ctaaaaccgt actttctaat
    13681 ccttcttcac tttgttcagc ttgaacaata ccatcgatac ggccattcaa atcttgatat
    13741 acatgattga aagttgttgg tgaaggtcta ccacttaaat tagcacttgg agcagctaga
    13801 ggttcattta tgatttgtaa taattgtcta cctacagaat ggcttggcat tctaacagca
    13861 actgatgata aacctccaga aacttttcga catagatagc ctagctttaa cggcaatata
    13921 aacgaaatag ggcccggcca gaatgcctgc attaactttt ctacgcgtgg atccaaagta
    13981 tatgtaaaat cttttaattg acctttactg tgtatatgaa caataagcgg attgtcagat
    14041 ggacggcctt tagcttcata tattttagct acagcttctt catctgtcgc atttgctgca
    14101 agtccataaa ctgtttcagt tggtaaacct attaaaccac cgtttaaaac aatgtctttt
    14161 atttcattaa ttttaggata ttgctgtaaa tcttcattat attctctaac atcccaaatt
    14221 ttagtatcca acttaatcac gcctttctta tttatcataa tataaagcaa aaagctatgc
    14281 acttaactaa tcatagcaaa ggcataactt ctaattacca tttaaatgag acgattcgat
    14341 cgtggccatt tatatcttta ataatgtcga tttttttgtc aggaaattta tttaaaatta
    14401 ttgatttaag tgcctcacct tgattgtaac caatttcaaa aacaactggg ctgccttttt
    14461 ccataacgtg aggtaaatct tcaatgattg attcataaat agcatatcca tggttatctg
    14521 caaacaatgc ctgatgtggt tcgaatctcg taaccgttgg agacatcgta accatatctt
    14581 tttcatctat atatggtgga ttagatatca agccgttcaa cttgatacct tcattaatta
    14641 agggctttaa tgcatcccct gttaaaaatt gtatttgtga ttgatgcttc tcagcattat
    14701 tacgagccat attcattgct tcaagtgaaa tatcagtagc aataacattt aaatccggct
    14761 tttcacattt caaagtaatt gcaagtacac cactacccgt tccgatatct acgattgttg
    14821 catcatcttc taactgttgt aagaaatgca acattacttc ttcagtttca ggtcttggta
    14881 tcaaacaatt tgagtttaca tcaaacgttc taccataaaa tgaggcaaag ccaactatat
    14941 actgtatagg ctctcctaat aacatacgtt gtaatgctaa gtcgaacttc ataatcatcg
    15001 ctttcggcat atcatcatgc atgtggacta caaagtccgt acgcgtccat tgaaatacat
    15061 ctaacattaa ccattcagct cgtgtttgtt caaacccttt ttgttgtgtt aaatgaattg
    15121 cttcatctaa cttttcttta taattcacca ttattaagtt ctttcaattt atctgtctgc
    15181 tctgataaag tcagtgcatc tataatttct tctaaatggc cttccataat ttgccctaat
    15241 ttttgaagcg ttagacctat acgatggtct gttacacggc tttgtggata attataagtt
    15301 cgaatacgtt ctgaacgatc accagtaccg actgctgatt tacgttgtga cgcatacttt
    15361 tgttgttctt cttgaacttt catatcgtat aaacgtgctt ttaacacttt cattgctttt
    15421 tcacggtttt gaatttgaga cttctcagaa gatgttgcaa tgacaccagt tggtaaatgg
    15481 gtaatacgta ctgcagagtc agttgtgttt acgtgctgac cacctgcacc acttgaacga
    15541 tacgtgtcga tttttaaatc ttcatttcta atttcaattt ctacatcttc aacttctggt
    15601 aaaactgcca ctgtagctgt tgaagtatga atacgtccac ctgattctgt ttcaggcaca
    15661 cgttgaacgc ggtgcgcacc attttcaaat ttcaatttac tatacgcgcc attaccagaa
    15721 actgagaaac taatttcttt gtaaccacca tggtcacttt cagacgcttc tactatttca
    15781 gttttgaatc cttgtgattc agcatacttt gaatacatac gcattaaatc accagcaaaa
    15841 atcgcagcct catcaccacc tgctgctgct cttatttcta caataacgtc tttgtcatca
    15901 ttaggatctt taggaatcaa taatatttta agctcttctt caagatttgg aagttcagct
    15961 ttaataccat tactctcctc ttttaacatt tctacttctt ctttatcatc agtctcactt
    16021 aacatttctt caatatcagc taattcttct tttttagctt tatagttacg ataaacatct
    16081 acagtttttt gtaaatcagc ttgctcttta gaatatttac gtaatttatc tgaatcattt
    16141 acaacatctg ggtcacttaa cagttcattt aactgttcgt atctttcttc tacaatatct
    16201 aattgatcaa acacttataa ttcctcctta ttattatcac taggtgctac gatatggtgc
    16261 gcgcgacaac gtggctcata actttcattg gcacctacta agataatcgg atcatcgatt
    16321 ttagctggtt taccatttat taatcgttgc gttctactag atgaagaacc acaaacagca
    16381 caaactgctt gaagtttcgt tacttgttca ctgacagcca tcaatttagg cattggttcg
    16441 aacggttcgc ccctaaaatc catatctaat ccagcaacaa taacacggtg tccatctgct
    16501 gatagttttt ctactatact tacaatttca tcgtcaaaaa attgcacttc gtctattcct
    16561 ataacatcaa cattagttaa gtcgtgcgtc ataatttcac ttgctttaga aatattaatc
    16621 gcttcaatgg cattaccatt atgagagacc actttttctt tatgatatcg atcatcaatc
    16681 gccggtttaa atacaacgac tttttgttta gcgtatatac cccttcttag acgtcttatt
    16741 agttcttcgg atttaccgct aaacatacta cctgtaatac attctatcca accggaatgg
    16801 taagtttcat acattgagag ttccaccttt ttcaaaacat aatcgcttta ttatatcata
    16861 tttcaaatat tcataaatgt ctttttcata attatatcga tattgtacat gaacaattat
    16921 tttataaatt tgtcttgcat atttatatac agctattcta atttgttgct tcttattcgt
    16981 gcgatgtttc tactcaatac aaactttaat aaagggggaa atttatcatt atgtattaac
    17041 aacatggtat tgagtcactt ctttgaacac agtcgtaagt atataccctt actacgctta
    17101 taaataaaaa agctgtctac aattccatta taggatgcag acagcttaac gattactata
    17161 ttagttgttt gatttaagac caaacttttt gttgaaacgt tccacacgtc catccgcagc
    17221 agcgaatttt tgacgtccag tgtagaatgg atgtgaatca gatgaaatat ctaaacgaat
    17281 aactgggtat tcttttccat cttcccactc catcatttct gaagatgttt ttgtagaacc
    17341 gcttaagaat ttgaagtttg tagtagtatc taaaaagatt acttggtgat actcaggatg
    17401 aattccttgt ttcattattt tcagctcctt tgccctgaac catctggaac agagttattt
    17461 gtgagttttt acccaatact gtgtaattat aaaggtaatt aattcaaaac gcaagcccct
    17521 atataatgtt tattaaatta taggtcgacc cgttttagta ctttcttctg cagacttttg
    17581 tagctgcttg aagaaatctt cattattctt agacctttta agtttgcgaa taaatctttc
    17641 agtaaagtca gttgagtcag tgaatagatt tcttaattgc cataatgtgt ctaattcaga
    17701 tttacttatc aacaattctt ctttacgcgt tgaacttctg ccaatatcaa ttgcagggaa
    17761 gatacgacgt tcagacaatt tacgatctaa atgtaactcc atgttacctg ttcctttaaa
    17821 ttcttcgtaa atcatatcgt ccatacgtga acccgtatca actaatgcag ttgcaagtat
    17881 tgttaaactt ccacccgctt caatatttct cgctgcaccg aagaatgctt ttggtttgtg
    17941 taaagatgca ggatctaaac cacctgataa tgtacgacca cttggtggaa taactaagtt
    18001 ataagcgcgt gctaatctcg ttatagaatc cattaaaata atgacatctt ccccaatttc
    18061 tactaaacgc tttgcacgtt caagtaataa ttcagctact ttaacatggt gttctggtgg
    18121 ttcgtcaaac gttgaatgaa cgacttcagc agcttctact gagcgttcta aatctgttac
    18181 ctcttcagga cgctcgccaa ctaacaaaat aaatagcttt gcatctggtt tgttcgtact
    18241 gattgcattc gctatttctt ttaataacga tgttttacct gctttaggtg gcgccactat
    18301 taaaccacgt tgacctaaac caatcggtgt tactaaatcc atgatgcgcg ttgaataatt
    18361 ttgtgtttct gtctctaatt taatacgctc atctggataa agtggtgtca aagcttggaa
    18421 atgcggacgt ttcttcactt cttctgcgtt atggtcattg acaaagtcaa cttgtaataa
    18481 gccataatat ttttcgttat ctttaggttt tctaactttc ccagttactt tatccccacg
    18541 tttaatttca aaacgacgaa tttggctagc agatatataa atatcttttt cccctttaga
    18601 atagttcact gttcttaaaa aaccataacc atctggttgt atatcatcta agataccttc
    18661 catataatag ttaccatctt tttccatttg tgcttccata atagctagaa caagttcttt
    18721 tttatttaat ttactatagt tcgtcaactt aagagtttta gctttttgag tgagttcctt
    18781 ggtagtatag ttcttgtaca attcgtggaa tgattcatac tgaggagatg tacgttctct
    18841 ttcaggcata tagtttacac ccatttcatt attttttagt tagtaagtaa tagataggca
    18901 tgacaatgca taaataactg tgctagcaca atcccattat gctaatcccc aaccttttaa
    18961 atacatgaat aactatagca aatttttatt ttaatta
//
LOCUS       DAMQWL010000045        18308 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.045, whole genome shotgun sequence.
ACCESSION   DAMQWL010000045 DAMQWL010000000
VERSION     DAMQWL010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 18308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18308
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.045"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(691..1968)
                     /locus_tag="PF788_001403"
     CDS             complement(691..1968)
                     /locus_tag="PF788_001403"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HDG6303667.1"
                     /translation="MQNLDKNFRHLSRKEKLQQLVDKQWLSEEQFDILLNHPLIDEEV
                     ANSLIENVIAQGALPVGLLPNIIVDDKAYVVPMMVEEPSVVAAASYGAKLVNQTGGFK
                     TVSSERIMIGQIVFDGVDDTEKLSADIKALEKQIHKIADEAYPSIKARGGGYQRIAID
                     TFPEQQLLSLKVFVDTKDAMGANMLNTILEAITAFLKNEFPQSDILMSILSNHATASV
                     VKVQGEIDVKDLARGERTGEEVAKRMERASVLAQVDIHRAATHNKGVMNGIHAVVLAT
                     GNDTRGAEASAHAYASRDGQYRGIATWRYDQDRQRLIGTIEVPMTLAIVGGGTKVLPI
                     AKASLELLNVESAQELGHVVAAVGLAQNFAACRALVSEGIQQGHMSLQYKSLAIVVGA
                     KGDEIAKVAEALKKEPRANTQAAEHILQEIRQQ"
     gene            2222..3388
                     /locus_tag="PF788_001404"
     CDS             2222..3388
                     /locus_tag="PF788_001404"
                     /EC_number="2.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HDG6303668.1"
                     /translation="MTIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAV
                     SPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFA
                     RCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAM
                     VIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAK
                     RQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNI
                     YTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKAL
                     LNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPE"
     gene            complement(3558..4079)
                     /locus_tag="PF788_001405"
     CDS             complement(3558..4079)
                     /locus_tag="PF788_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDG6303669.1"
                     /translation="MEYKSYYDSPVGRLELLSDGVSLTAVLFENQQGDGTREENTSLA
                     IFREATQWLDAYFKGDNPEITIPLKPTGSHFQQCVWNELRQVPYGTLTTYGAIAKKVG
                     KLLNKPKMSAQAVGGAVGSNPLSIIVPCHRVVGKTGSLTGFGGTINNKIKLLELENID
                     MSKLYVPKHSTKP"
     gene            4488..6593
                     /gene="clpL"
                     /locus_tag="PF788_001406"
     CDS             4488..6593
                     /gene="clpL"
                     /locus_tag="PF788_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpL"
                     /protein_id="HDG6303670.1"
                     /translation="MNNGFFNSDFDSIFRRMMKDMQGSNQVGNKKYYINGKEVSPEEL
                     AQLTQQGGNHSAEQSAQAFQQAAQRQQGQQGGNGNYLEQIGRNLTQEARDGLLDPVIG
                     RDKEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISV
                     DISSLEAGTQYRGAFEENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLS
                     DILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIR
                     EKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVE
                     TEKRISELENDKRKAVSAEEYKKADDIQNEIKSLQDKLENSNGEHTAVATVHDISDTI
                     QRLTGIPVSQMDDNDIERLKNISNRLRSKIIGQDQAVEMVSRAIRRNRAGFDDGNRPI
                     GSFLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGY
                     DDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTI
                     IICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLL
                     DDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGARPLRRIVEQQVRDKITDYYLDHT
                     DVKHVDIDVEDNELVVKGK"
     gene            complement(6662..6832)
                     /locus_tag="PF788_001407"
     CDS             complement(6662..6832)
                     /locus_tag="PF788_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HDG6303671.1"
                     /translation="MSVIINILIFLAIFGYALYTLVKFFKRSKQGKCGTCDINRDCCG
                     TEQHTANHFPGK"
     gene            complement(6845..8839)
                     /gene="feoB"
                     /locus_tag="PF788_001408"
     CDS             complement(6845..8839)
                     /gene="feoB"
                     /locus_tag="PF788_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HDG6303672.1"
                     /translation="MENYCILGNPNVGKTSLFNALTGSYEYIGNWSGVTVEKKVGKLK
                     ENVGQLIDLPGTYDLSPISKDETVVTDYLLNDSFSGIINIVDASQLKRNMQLTVQLLE
                     LNQPIYIGLNMIDVATKRGIKIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGE
                     GYQPHFKINYGEKIEETIKNMCQIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEV
                     VNKLSSLRDQVAEQVGAVSVRREMERIRNHYIETLLQDVVTYPDEDKQYFSSRIDKIL
                     THKYIGMPIFLAIMWLIFQTTFTWIGTPLSDQLDAFIGGTFTDSVKTIMNYLGVIPFL
                     QDLITDGIIAGVGSVLVFVPQIVVLFFFISLLEDSGYMARIAVLMDRIMESFGLSGKS
                     FIPMIIGFGCNVPSIMAARSIENEKERLTTILIAPFMSCSARLPVYALFVGIFFKENQ
                     SLVVLSLYVLGIIMAFLVSTVLTKTILKNDNAIFIVELPTYRVPSIKTLWRSTWEKAK
                     GFVRKAGTFIFGGSVVIWLLSYVGPHGINVNINQSFLHMVGSFFGMLVQPLGFGTWQA
                     GATLVPGFLAKEVIVSSMAIIYSSGDAGLVNVIQNQFTPLSAYAFMIFILLYIPCVST
                     VAAIRKETYSWKWTALAVAYPLVTAYVLTFIFYQVGHLFV"
     gene            complement(8851..9078)
                     /locus_tag="PF788_001409"
     CDS             complement(8851..9078)
                     /locus_tag="PF788_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HDG6303673.1"
                     /translation="MLNIKNGEMNKAYKIKRMDIANENMLYRLSAFGLTDDAIITIKQ
                     KCLFKGPCIIEVNGQQLSIRHCDACSIALEE"
     gene            complement(9294..11783)
                     /gene="farE"
                     /locus_tag="PF788_001410"
     CDS             complement(9294..11783)
                     /gene="farE"
                     /locus_tag="PF788_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001051413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid efflux MMPL transporter FarE"
                     /protein_id="HDG6303674.1"
                     /translation="MAKFLYKMGTFIAKHKWSAVIAWIVIVAAILIPLATNAPKFDND
                     IKMTGLESLDTNKKIEKHFNQDSEKAQIRVVFKTTKDDGIVQPNITKDIKKTLDDIKK
                     DDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNV
                     QTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGII
                     SLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAG
                     SAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFAVLSALTLLPALISIFHKRI
                     KVNKLQSKFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPA
                     DSTQKKAYDIISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDI
                     VTPPQMSKDNDYALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVI
                     NIDMSKKLNEAIPLFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLV
                     MQDGFMKGLFGIETTGPMLAFLPVITIGILFGLAMDYEVFLMSRIHEEYSKTGDNDYS
                     IKVGLKESGPVIVAAALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIP
                     ALTKLFGKGSWYLPAWLNRIIPRVDIEGHALEKYKTVESQESEAKDSKETYDTTFKVY
                     PQGATNVSKHQDAHGQDDAHSIVLDDKTMALYQEVKQQSASSLFLYDALIDYQNKHQL
                     NSKKQATNIEQLNKNIEKLNQLLEKNLRNKS"
     gene            11928..12476
                     /gene="farR"
                     /locus_tag="PF788_001411"
     CDS             11928..12476
                     /gene="farR"
                     /locus_tag="PF788_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid efflux pump transcriptional regulator
                     FarR"
                     /protein_id="HDG6303675.1"
                     /translation="MKETDLRVIKTKKALSSSLLQLLEQQLFQTITVNQICDNALVHR
                     TTFYKHFYDKYDLLEYLFNQLTKDYFARDISDRLNHPFQTMSDTINNKEDLREIAEFQ
                     EEDAEFNKVLKNVCIKIMHNDIKNNRDRIDIDSDIPDNLIFYIYDSLIEGFIHWIKDE
                     KIDWPGEDIDNIFHRLINIKIK"
     gene            complement(12553..12720)
                     /locus_tag="PF788_001412"
     CDS             complement(12553..12720)
                     /locus_tag="PF788_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303676.1"
                     /translation="MRYVISIIMGIVLAIWSFKQLSQSHLDSGFIFFFIVYVLCISCF
                     NSDKHDKNKKR"
     gene            complement(12832..14376)
                     /gene="pruA"
                     /locus_tag="PF788_001413"
     CDS             complement(12832..14376)
                     /gene="pruA"
                     /locus_tag="PF788_001413"
                     /EC_number="1.2.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamate gamma-semialdehyde dehydrogenase"
                     /protein_id="HDG6303677.1"
                     /translation="MVVEFKNEPGYDFSVQENVDMFKKALKDVEKELGQDIPLVINGE
                     KIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELML
                     RVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDR
                     EGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLM
                     EILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEG
                     QNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYD
                     EVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEGKLEQGGGTDDS
                     KGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITN
                     NREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQK
                     VVSEMF"
     gene            complement(14566..15165)
                     /locus_tag="PF788_001414"
     CDS             complement(14566..15165)
                     /locus_tag="PF788_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HDG6303678.1"
                     /translation="MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATN
                     KRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVF
                     IGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAG
                     SVVTKDIPPHSLAVGNPCKVVRKIDNDLPSETLNDETIK"
     gene            15404..15595
                     /gene="cwrA"
                     /locus_tag="PF788_001415"
     CDS             15404..15595
                     /gene="cwrA"
                     /locus_tag="PF788_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall inhibition responsive protein CwrA"
                     /protein_id="HDG6303679.1"
                     /translation="MRILITGTVAILIILGLVKTIQDYEMTNDTSRQLSDNKDDDKVI
                     HLNNFKNLHAKEFNPSDFF"
     gene            15835..18243
                     /locus_tag="PF788_001416"
     CDS             15835..18243
                     /locus_tag="PF788_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDG6303680.1"
                     /translation="MANTKKTTLDITGMTCAACSNRIEKKLNKLDDVNAQVNLTTEKA
                     TVEYNPDQHDVQEFINTIQHLGYGVAVETVELDITGMTCAACSSRIEKVLNKMDGVQN
                     ATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDNNKDQTSRKAEALQHKLIK
                     LIISAVLSLPLLMLMFVHLFNMHIPALFTNPWFQFILATPVQFIIGWQFYVGAYKNLR
                     NGGANMDVLVAVGTSAAYFYSIYEMVRWLNGSTTQPHLYFETSAVLITLILFGKYLEA
                     RAKSQTTNALGELLSLQAKEARILKDGNEVMIPLNEVHVGDTLIVKPGEKIPVDGKII
                     KGMTAIDESMLTGESIPVEKNVDDTVIGSTMNKNGTITMTATKVGGDTALANIIKVVE
                     EAQSSKAPIQRLADIISGYFVPIVVGIALLTFIVWITLVTPGTFEPALVASISVLVIA
                     CPCALGLATPTSIMVGTGRAAENGILFKGGEFVERTHQIDTIVLDKTGTITNGRPVVT
                     DYHGDNQTLQLLATAEKDSEHPLAEAIVNYAKEKQLILTETTTFKAVPGHGIEATIDH
                     HYILVGNRKLMADNDISLPKHISDDLTHYERDGKTAMLIAVNYSLTGIIAVADTVKDH
                     AKDAIKQLHDMGIEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQIAKLQQQG
                     KKVAMVGDGVNDAPALVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKAT
                     IRNIRQNLFWAFGYNIAGIPIAALGLLAPWVAGAAMALSSVSVVTNALRLKKMRLEPR
                     RKDA"
BASE COUNT         6002 a         3405 c         2898 g         6003 t
ORIGIN      
        1 tatcgctgtt aatctcattt aattttttaa atttttttct aacctttttc aaaataaaat
       61 gctctttaat tccatctctt aaatacatat aaatctctat tataatctcc ataaatgtca
      121 tatctcctct ctcaaaaaac attatactca atatattaaa aataagaaag gttttttcag
      181 aatttttagt attttcagat atttattctt aagtatctta ttattacttc tttttaacgc
      241 tagtggaata attaataata attgtattta aatgcaatgc tgttgttctt tcatacttac
      301 aagcaagtca taagaaatga gaaattaaat tcttatatga tgaataaatg atgactgcag
      361 aagaaattgc taaaaaagga gtggagtgag gcattctact gttcatattg ttaacaaata
      421 tcaaaatgat aggaacttga agaatctaag actgttaaaa tcgagacaat aagaaactcg
      481 ttccaaattt gaatcctata atgaattcgt ctcatgaaga agttatttac ttttcattag
      541 actgatttac taatcaaaaa acttctatca cgaacgcttc aatttcctgt atgcgtgtga
      601 tagaagtttt tatttttgtt catattaatt tatctaagcg ctacgatgga ctgacttaaa
      661 cttttcttta aaatcgctat tcgccattta ctattgttgt ctaatttctt gtaaaatatg
      721 ttccgctgct tgtgtatttg cacggggttc ttttttcaaa gcttcagcta ctttagcaat
      781 ttcatcacct tttgccccta caacgatagc taatgattta tattgtaaac tcatatgacc
      841 ttgttgaata ccttctgaca caagcgcgcg acatgctgca aagttttgcg ctaaaccaac
      901 ggcagcaact acatgaccta attcttgtgc tgactctaca tttagtagct ctaatgaagc
      961 tttagcaatt ggtaatactt ttgtaccacc gccaacgatt gccaatgtca taggcacttc
     1021 aattgtacca atcaatcgtt gacgatcttg atcgtaacgc catgtagcaa taccacgata
     1081 ctgtccgtca cgactcgcgt atgcatgcgc acttgcttct gcaccacgcg tatcatttcc
     1141 tgttgctaaa acaacagcat gtatgccatt cataacacct ttattatgtg ttgctgcacg
     1201 atgaatatct acttgggcca atacagaagc acgttccatt cgtttggcaa cctcttctcc
     1261 agttctctcg ccccttgcta aatctttaac atcaatttcg ccttgaactt taacaacgga
     1321 cgctgttgca tgattggata aaatactcat taaaatgtcg ctttgcggaa attcattttt
     1381 taaaaatgca gttatggcct ctaaaatcgt attaagcata ttagcgccca tagcatcttt
     1441 cgtatcaaca aatactttta aagatagtaa ctgttgctca ggaaatgtat caatcgctat
     1501 acgttggtaa ccaccaccac gcgctttaat agaaggatat gcctcatccg caattttatg
     1561 aatttgcttt tctaaagctt taatgtctgc tgataatttt tcagtatcgt caacgccatc
     1621 aaagacgatt tgacctatca taatacgttc agaagatacc gttttaaatc cgccagtctg
     1681 attcactagc tttgcaccat aactagctgc agcgacaact gaaggctctt ccaccatcat
     1741 aggtacaaca tatgccttat cgtccacaat gatattcggt aataatccaa cgggtaatgc
     1801 accttgcgcg atgacatttt caattaaact attggctact tcttcatcga ttaatggatg
     1861 attcagtaaa atgtcgaatt gttcttctga taaccattgc ttatcaacca attgttgtaa
     1921 cttttcttta cgagataaat gtcgaaaatt cttatctaaa ttttgcatgg acgtactcct
     1981 tttacttcac ataattttta acatttcaat cactactatt tttaccacaa aataacgtca
     2041 ttcgtcttaa aattcaattg aataattgtc gttttgactt taaaataaaa caaggtaaat
     2101 taaaacgctt acaagaaacg acaaatcatt tttaaattta gtatatttct ttgtataaaa
     2161 ttagcatatt ctgatatgat acaagtgttg cttttataaa tttgaaagga tgtaaaacct
     2221 tatgacaata ggtatcgata aaataaactt ttacgttcca aagtactatg tagacatggc
     2281 taaattagca gaagcacgcc aagtagaccc aaacaaattt ttaattggaa ttggtcaaac
     2341 tgaaatggct gttagtcctg taaaccaaga catcgtttca atgggcgcta acgctgctaa
     2401 ggacattata acagacgaag acaaaaagaa aattggtatg gtaattgtgg caactgaatc
     2461 agcagttgat gctgctaaag cagccgctgt tcaaattcac aacttattag gtattcaacc
     2521 ttttgcacgc tgctttgaaa tgaaagaagc ttgttatgct gcaacaccag caattcaatt
     2581 agctaaagat tatttagcaa ctagaccgaa tgaaaaagta ttagttattg ctacagatac
     2641 agcacgttat ggattgaatt caggcggcga gccaacacaa ggtgctggcg cagttgcgat
     2701 ggttattgca cataatccaa gcattttggc attaaatgaa gatgctgttg cttacactga
     2761 agacgtttat gatttctggc gtccaactgg acataaatat ccattagttg atggtgcatt
     2821 atctaaagat gcttatatcc gctcattcca acaaagctgg aatgaatacg caaaacgtca
     2881 aggtaagtcg ctagctgact tcgcatctct atgcttccat gttccattta caaaaatggg
     2941 taaaaaggca ttagagtcaa tcattgataa cgctgatgaa acaactcaag agcgtttacg
     3001 ttcaggatat gaagatgctg tagattataa ccgttatgtc ggtaatattt atactggatc
     3061 attatattta agcctaatat cattacttga aaatcgagat ttacaagctg gtgaaacaat
     3121 cggtttattc agttatggct caggttcagt tggtgaattt tatagtgcga cattagttga
     3181 aggctacaaa gatcatttag atcaagctgc acataaagca ttattaaata accgtactga
     3241 agtatctgtt gatgcatatg aaacattctt caaacgtttt gatgacgttg aatttgacga
     3301 agaacaagat gctgttcatg aagatcgtca tattttctac ttatcaaata ttgaaaataa
     3361 cgttcgtgaa tatcacagac cagagtagtc ggtgtattta aaacacatat aataaaacct
     3421 aaaagcagca gtaagaccac ttctaattga aatcgtctta ctgctgttct ctatttataa
     3481 cacttcgtat tgaatgaatt cattatgcct atttgacaca ttattgaagt tttcctaatg
     3541 cctggatcct ttatacgtta cggcttcgtg ctatgttttg gtacataaag ctttgacata
     3601 tcgatattct ccaactctaa cagcttaatt ttattattaa tcgttccacc gaaccctgtt
     3661 aagctacccg ttttaccgac aacacgatga catggcacga taatagataa tggattactt
     3721 ccgactgcac ctccaaccgc ttgggctgac atttttggct tgttaagcag cttgcctact
     3781 tttttggcaa tagcaccata cgttgttaga gtcccataag gaacctgtct taattcattc
     3841 caaacacact gttgaaaatg actacctgtt ggctttaaag gtattgtgat ttcaggattg
     3901 tcacctttaa aatacgcgtc taaccactgt gtcgcctctc taaatatcgc taaagacgta
     3961 ttttcttccc tagtaccatc accttgttga ttttcaaaca aaacagcggt cagacttacc
     4021 ccatcactca aaagttccaa tcgtcctaca ggcgaatcat agtaactctt atactccata
     4081 aaaatccccc ctttttctaa tcatacgcct taattgttaa attagaaaat attcatgttc
     4141 acatttttta aaaataaata agtcgtcaat tacgtatata aacacgtaat accagctatc
     4201 actttgctgc aatatacagt tacatatctt actacacgtg ctaacctctt actttgtaaa
     4261 ccaaatctta aattaaaata ttgaaaatgc aatgaatcct taatatttta ttaaacctat
     4321 aattacttat taaaaataac acacaatatt cataaagttt taaaaatatt ctgttttatc
     4381 acctactatt agtggaaaag tacaattgca attgtatata gtttgcataa cgcttcaaaa
     4441 gtaatttctt ttttgtttag ttcaaaaaaa tttagaggtg atgttatatg aataacggtt
     4501 ttttcaatag cgactttgat tcaatttttc gaagaatgat gaaagatatg caaggttcaa
     4561 atcaagtcgg aaacaaaaag tactatatta atggtaaaga agtttcacct gaagaactag
     4621 cgcaactcac acaacaaggt ggcaatcact ctgctgaaca aagtgcgcaa gcttttcaac
     4681 aagcagcaca aagacaacaa gggcaacaag gtggcaacgg caattattta gaacaaattg
     4741 gtcgtaacct tacgcaagaa gcacgtgacg gtttattaga tccagtcatt ggtcgtgata
     4801 aagaaattca agaaactgct gaagttttaa gtagacgaac taaaaacaat cctatattag
     4861 ttggagaagc tggtgttggt aaaactgcga ttgttgaagg tttagcacag gcaatcgttg
     4921 aaggaaatgt accagcagca atcaaagaca aagaaattat ttctgtagac atttcatcat
     4981 tagaagctgg aacgcaatat cgtggtgctt ttgaagaaaa tattcaaaaa ttaatcgaag
     5041 gtgttaaatc ttcacaaaat gccgtactat tctttgatga aatccatcaa attatcggtt
     5101 caggtgccac aggaagtgat tcaggtagca aagggttatc tgatattttg aaacctgcat
     5161 taagtcgtgg tgagatttct attattggtg caacaacaca agatgaatat cgaaacaata
     5221 ttcttaaaga tgctgcatta acgcgcagat ttaatgaagt gcttgttaat gaaccaagcg
     5281 ctaaagatac tgttgaaatt ttaaaaggta ttcgcgaaaa attcgaagaa caccatcaag
     5341 taaaattacc agatgacgta ttaaaagcat gtgttgactt atcaattcaa tatattccac
     5401 aacgattatt accagataaa gcaatcgatg tgttagatat tacagcagca catttatctg
     5461 cgcaaagtcc agctgtcgat aaagttgaaa ctgaaaaacg aatttctgaa ttagaaaatg
     5521 ataaacgtaa agcagtaagt gctgaagaat ataaaaaagc tgacgacatt caaaatgaaa
     5581 tcaaatcatt acaagataaa ttagaaaata gtaatggtga acatactgct gttgctacag
     5641 ttcatgatat ttcagatact attcaacgat taactggtat tccagtttct caaatggatg
     5701 ataacgatat tgaacgttta aaaaatattt ctaatcgttt aagaagtaaa atcataggtc
     5761 aagatcaagc tgtagaaatg gtttcacgtg caattcgccg taatcgtgct gggtttgatg
     5821 acggcaaccg tccaattggc agtttcctat ttgttggccc tactggtgtt ggtaaaacag
     5881 agcttgctaa acaattagca attgatttat ttggtaataa agatgcactg attcgacttg
     5941 atatgagtga atatagtgac acaacagctg tttcaaaaat gattggtaca actgctggtt
     6001 atgttggtta tgatgacaat tcaaatacgt taactgaaaa agtacgccgt aatccatact
     6061 cagtcattct atttgatgaa atcgaaaaag caaatccaca aattttaaca ttgttattac
     6121 aagtaatgga tgatggtaat ttgactgatg gtcaaggtaa tgtcatcaac tttaaaaata
     6181 caattattat ttgtacatca aatgctggct ttggcaatgg caatgacgct gaagaaaaag
     6241 atattatgca cgaaatgaaa aaattcttcc gccctgaatt ccttaaccgc ttcaacggca
     6301 tcgttgaatt cttacattta gataaagatg cattgcaaga tatcgtcaac ttattattag
     6361 acgatgtaca agttacatta gacaaaaaag gtattacgat ggacgtttct caagatgcga
     6421 aagattggtt aattgaagaa ggctatgatg aagaattagg tgcacgtcca ttaagacgta
     6481 ttgttgaaca gcaagtacgt gacaaaatta cagattacta tttagatcat acagacgtta
     6541 aacatgtgga tatagatgtt gaggataacg aattagtcgt aaaaggtaaa taacgacact
     6601 ttaacatatc gcgcatcaaa aatgagcatc aggtcgccct tgcctgtgct cattttttta
     6661 attatttccc tggaaaatga ttcgctgtgt gctgttctgt tccacaacaa tcacgattaa
     6721 tgtcacatgt accacatttt ccttgttttg aacgcttgaa aaattttact agtgtatata
     6781 aggcatatcc gaaaattgct aaaaaaatta aaatgttaat aatgactgac actttaacca
     6841 ctccttaaac aaataaatgt ccgacttgat aaaaaatgaa tgttaagaca tatgcagtga
     6901 ctagaggata ggcaactgca agtgccgtcc atttccatga ataagtctct ttacggattg
     6961 ctgctactgt agaaacacaa ggaatataca atagtataaa tatcataaat gcatacgcag
     7021 atagcggtgt gaattgattt tgaatcacat taacaaggcc tgcatcacct gatgaataga
     7081 taatcgccat cgaacttacg ataacttctt ttgctaaaaa tcctggcact aacgtagcac
     7141 ctgcttgcca tgttccaaat ccgagcggtt gcactaacat accaaagaaa ctaccaacca
     7201 tatgtaaaaa actttgattg atattcacat tgataccatg tggtcctaca taacttaata
     7261 gccaaatgac tactgagccg ccaaaaataa atgtacctgc tttacgaaca aagcccttag
     7321 ccttttccca agtactacgc cacaacgttt taatggaagg cacacggtat gttggcaatt
     7381 ccacaataaa gattgcatta tcatttttta aaatcgtctt agtaagtact gtactgacta
     7441 aaaatgccat aataatacct aaaacataca ggcttaatac tactaaagat tgattctctt
     7501 tgaaaaagat acctacgaac aacgcataca ctggcagtct agcagagcat gacatgaatg
     7561 gtgcaattaa tatcgttgtt aaacgctctt tttcattttc aatactgcgc gcagccataa
     7621 tactcggtac attacaacca aatccgataa tcattggtat aaaagacttc ccgcttaaac
     7681 cgaacgattc cataatacga tccattaaaa ccgcaatacg tgccatataa cccgaatctt
     7741 ctaataaaga tataaagaaa aagagcacaa caatttgtgg tacaaagact aatactgatc
     7801 ctacaccagc aataatgcca tctgtaatta aatcttgtaa aaatggtata acaccaagat
     7861 aattcataat cgtcttcaca ctatctgtaa atgtaccacc tataaatgca tcgagttgat
     7921 ccgacaaagg tgtgccaatc catgtaaatg tagtttgaaa gatcaaccac ataattgcta
     7981 gaaagatagg catccctata tatttatgtg ttaatatctt gtctattcta gagctgaaat
     8041 attgcttatc ttcatctgga tacgttacca cgtcttgcaa taacgtctca atataatgat
     8101 tgcgtatacg ctccatctct cgacgaacag atacagcccc tacttgttca gcaacttgat
     8161 cacgtaaact cgacaattta tttacaacct ctgaattaag ttcgtttgca atttgcatgt
     8221 tatttaataa gaattgaatc gcaataaacc tagcttgata cttatcatga gatgtctctg
     8281 tcattattat ttgacacata tttttaattg tctcttcaat cttctcacca taattgattt
     8341 taaaatgcgg ttgataccct tcccctagat gctttatttc gccaagtaaa tattttgttc
     8401 ctttgcctgt acgtgccaca actggaaaaa taggtgtttt taactttttc atcaatttat
     8461 gataatcgat ttttatcccg cgctttgtag ctacatcaat catatttaat ccgatgtata
     8521 ttggttgatt aagttctaac aattgtactg ttaattgcat atttcttttt agttgactcg
     8581 catcaacaat gttaatgatt cctgaaaatg aatcgtttaa taaatagtct gtcactacag
     8641 tttcatcttt agaaatcggc gataaatcat atgtacctgg taaatcaatt aattgtccta
     8701 cattttcttt aagtttccct acttttttct ctaccgttac gccactccag ttgcctatat
     8761 attcatacga accagttaaa gcgttaaaca aagatgtttt accaacatta ggatttccta
     8821 aaatacaata attttccatt cgtccggctc ctattcttct aatgcaatag aacaagcatc
     8881 gcaatgtcta atacttaact gttgtccgtt tacttcaata atacatggcc ctttaaataa
     8941 acatttttgt ttaatcgtta tgatagcgtc atctgttaac ccaaaggcac ttagacgata
     9001 caacatattc tcattagcaa tatccattcg ctttatttta taagccttat tcatttcacc
     9061 atttttaatg tttaacatac tatttcgctc tcctattaga aataataatc attatcactt
     9121 aaaaatcata acccttaaaa ttgtagctcg caatacttta tttaaataat tttcattttt
     9181 catgtaaaat ttgtgacatt gcaaaaatgt tttgtataat cacttccatg caaaaaacct
     9241 ccgcttcaaa tgtcattgat agacatttaa agcggaggca tgtacatgtt attttatgat
     9301 ttatttcgta gatttttttc taacaattga ttgagctttt caatattttt attcaactgt
     9361 tctatattcg ttgcttgttt ttttgaattt agttgatgct tgttttgata atctattaaa
     9421 gcatcatata agaacaatga acttgctgat tgctgtttca cttcttggta caatgccatc
     9481 gttttatcat ctagtactat tgaatgtgca tcatcttgcc catgtgcatc ttgatgtttc
     9541 gatacatttg ttgcaccttg tggatatact ttaaaggttg tgtcgtatgt ttccttacta
     9601 tctttagctt cagattcctg tgattcaacc gttttatatt tttcaagtgc atgtccttca
     9661 atatcaactc gtggaataat gcgattcaac catgctggta aataccacga accttttcca
     9721 aacaatttcg ttaatgcagg aattaacatc attctgacta cgaaggcatc aaagagtaca
     9781 ccaaacgcta atgccatacc cattgattta atcatgacat cttcttggaa tacaaacgca
     9841 aagaagacac taaacataat taatgcagct gctacaataa caggaccgct ttctttcaat
     9901 cctactttga tagaataatc attatcccct gttttactat attcttcatg aattcgcgac
     9961 ataaggaaga cttcataatc catcgctaat ccaaataaga tacctatagt aataaccggt
    10021 aaaaatgcta gcattggtcc tgtcgtttca ataccaaaca gacctttcat aaaaccatct
    10081 tgcattacta atgttgtaaa tcctaatgtt gccattaatg acaagacgaa tcctaaaact
    10141 gcttttaatg gtattagaat tgaacggaag acaatcatta ataagaaaaa tgctaataca
    10201 acaatgactg aggcaaataa aggtatcgcc tcatttaact ttttagacat atcaatatta
    10261 atgacacttt gtcccgaaat ctccgttttg aacccatatt tatcttgtgc atctttatga
    10321 taatctcgta aatcatgcac taaatcattt gtactctctg cattaggccc ttgcttaggt
    10381 atcacgacca tcaaagcgta atcattatct ttactcattt gtggtggcgt aacgatatct
    10441 acatttttct tatctttaat atctttatat acagactgta aatcttgttg taatccttgt
    10501 ggatcatcct ttttatcttt cacatttatc aacatcggta tttggccatt aaatccttca
    10561 ccaaatttat ccgagataat atcgtaagct tttttctgtg tagaatctgc tggtttaaca
    10621 ccgtcatctg gaataccaag tcgcatatga ctaactggta ttgcagctgc tactaatatg
    10681 attaaaccta gtaatactgc cgcaagtgca tttcctgtaa taaatttaga ccatggcgta
    10741 tcaatatctt ttttgaattt agactgtaat ttattcactt taatgcgttt atggaaaatg
    10801 cttattaatg caggtaataa agttaaagcg ctaagtactg caaaaacaac actaattgcc
    10861 gaagcaaatc ccattaccgc taagaagtca atgcctacta atgataaacc acatactgca
    10921 attacaactg ttacaccagc aaaaacaact gcactacctg ctgttcctat tgcaagacca
    10981 atgcctttaa tgtaatctgt ttcagttttc ataacttgtc gatatctgaa taaaataaat
    11041 aatgcataat cgataccaac tgctagtcca atcattacgg ctaatgtcag tgtgacattt
    11101 ggtatatcga atgcataagt taacaaactg ataataccta caccagaggc tagaccaatc
    11161 aatgcactta taattggtaa tcctgcagca atgactgaac cgaatgtgat taacagtaca
    11221 acaaatgcaa caataatacc aactagttca gaattaccgc ctacttctgt agatgtcatt
    11281 cctgtaccag ttaactctgt ttgtacatta tgattgtcac gtaagtcttt caaatgactt
    11341 ttaacattat ctctagagcc atcttttaaa gatgtttgac taacgtcata tgtgatatct
    11401 gcaaatgcag ttgttttatc tttactaatt tgcttatttt cataaggatc tgatatttta
    11461 tcaatgtgct tgtcatcttt tttaatatca tctaacgttt tcttaatatc tttagtaatg
    11521 ttcggttgca caataccatc atctttagtc gtcttaaaga caacacgtat ttgtgccttt
    11581 tcactatctt gattaaaatg tttttcaatc tttttattcg tatctaacga ctctaatcct
    11641 gtcattttaa tatcattgtc aaatttcggt gcatttgtag caagtggtat caatattgca
    11701 gctacaatca ctatccatgc aatgaccgcg gaccatttat gttttgcgat gaatgtcccc
    11761 atcttatata aaaattttgc caaagtatat tgcctccttt taaaatcaac gttatagttt
    11821 aaatatacag tgtagattat tgttcgatta tagtatctat ccccgacctc ttaaagaatc
    11881 aattggaaaa ttttgtatat taaactacac acaaaggaga aatgtagatg aaagagactg
    11941 atttacgagt tataaagaca aaaaaagcat tgtcgagtag cttgctacaa ttgttagaac
    12001 agcaattatt ccaaacgatt actgtcaatc aaatttgcga caacgcactc gtacaccgta
    12061 caacatttta taaacatttt tatgataaat atgatcttct agagtacttg ttcaatcaat
    12121 tgactaaaga ctactttgct agagatatca gtgaccgtct taatcatcca ttccaaacga
    12181 tgagtgatac gattaataat aaagaggatt tgagagaaat cgcagaattc caagaagaag
    12241 acgctgaatt taataaagta ttaaaaaatg tctgcattaa aattatgcat aacgatatca
    12301 aaaataatag agaccgtatc gatattgaca gcgacatccc agataatctc atattttata
    12361 tttatgactc gttgattgaa ggttttatac attggataaa agatgaaaaa attgattggc
    12421 ctggcgaaga tattgataac attttccata gattaatcaa tattaagatt aaatagtaga
    12481 tgagaaactc atgagcgtta ccaacattca taataaaaac gatagtgtac acgttaatga
    12541 attcgtgtac tactatcgtt ttttattttt atcgtgctta tcgctattaa aacaactgat
    12601 acacaacaca taaactatga agaaaaaaat aaatccgcta tctaaatgac tttgactcag
    12661 ttgtttaaat gaccaaattg ctaatacaat tcccattatt attgaaataa cgtatctcac
    12721 attcttatac ctataatcct tttctaaaaa tatggttgct attacttaat ttttaaagtt
    12781 ataaataaaa agagccaacc gcaatggatg gcccttgttc attatgaagc attagaacat
    12841 ttctgaaaca accttttgtt ctaagaagtg taataagtag tctggactac ctgttttagc
    12901 gtccgtacct gacattttga aaccaccaaa tggatggtat ccaacaactg ctgaagtaca
    12961 gcctctgtta aggtataaat tgcctacatc aaattcgttt accgctttaa tccaatgctc
    13021 gcgattattt gtaatcactg caccagttaa accgtaatct gtatcatttg caacctcaat
    13081 tgcttcatca aaatcgttaa ctttcacaaa gccaacaact ggaccaaaaa tttcttcttg
    13141 catgattcta tctttagatt taagtcctga aatgattgtt ggttctacaa agtaaccttt
    13201 tgaatcatca gtgccgccac cttgttctaa tttaccttct tctttaccaa tctcaatata
    13261 atttttaatc ttatcaaatt gttttttatt aataactggg cccatatacg tattgtctac
    13321 agtattgccc aacgttaatt cttttgttaa tttgattgat ttctctaata cttcgtcata
    13381 aacgtcttta tgcacaattg cacgtgaaca tgctgaacat ttttgaccag aaaaaccaaa
    13441 tgctgacgtt acaatagctt ctgctgccat atctgtatca atattttcat caactacaat
    13501 ggcatcttta ccacccattt cagcgataac acgtttcaag aagttttgac cttcttgaac
    13561 aacggcacta cgttcataaa ttctagtacc tgtcgcacgt gatcctgtaa atgtaacgaa
    13621 atgcgtatct ttatgatcaa ctaagtaatc accaatttct ttcggatcac caggaacaaa
    13681 gttaactacg ccttttggta atcctgcttc ttctaaaatt tccattaatt tataagcgat
    13741 ataaggtgta tcctcagcag gtttcaataa cactgtatta cctgccacaa ctggtgctaa
    13801 agttgtacca gccataatcg caaacgggaa gttccacggc ggaattgtaa cacctgtacc
    13861 aattgattta tagaaatatt tattgtgttc accttcacga tcaagtactg gcttaccttg
    13921 agccaagtcc atcattgaac gtgcatagta ttcaataaaa tcaatacctt cagctgcatc
    13981 accaactgct tcatcccatg gcttacctgc ttcataaacc ataattgctg caatttccgc
    14041 ttttcgacga cgaataattg ccgaaacacg taacataagc tctgcacgat catttgctga
    14101 ccatgttttc caagatttat aagcttcgtt tgctgcttta aacgcatctt caacatcttg
    14161 ttttgttgcc tttgatgcat ttgcaatcac ttgtgatgtg tctgcaggat tgattgattt
    14221 aattttgtca tctttgaaaa tcttctctcc attaatcact aatggtatgt cttgacctaa
    14281 ttctttttcc acgtctttca atgctttctt aaacatatcc acattttctt ggactgaaaa
    14341 atcgtaacca ggttcatttt taaattctac taccatgtac acttaccccc tataaatttt
    14401 gaaagtggtt taaccctttg atttaatgat ataacatcat ttaaactcat tttactatga
    14461 ttaaggttag ttttgcaatc gctttcattt ttatgtttta tcacttattc tcaagtattt
    14521 tgaaattgat tggttacttt ttaaaattta tatgggtcgc aactgctact ttatcgtttc
    14581 gtcatttaat gtttcggatg gtaggtcatt atcaatttta cgaacgactt tacaagggtt
    14641 tccaaccgct aagctgtgtg gcggaatatc tttagtgaca acactaccag caccaatcac
    14701 actgccttct ccaatcgtca cccctggtaa cacggctaca tgaccgccaa accaagtatt
    14761 actgccaata tgaatgggtc cggctttttc aaaaccttca tttctatgat ggaaattaag
    14821 tggatgtgtc gctgtgtaga atccacaatt aggtcctata aaaacattat cgccaattgt
    14881 aatctgtcca ccatccataa agtaacaatt ggtgtttaca tagacatttt ttcctagttt
    14941 aacgttccaa ccataatctg tatcaaaagg aatcgaaata cttacattgt ctgttgttgt
    15001 ttgaaataat tgatcaatta attcctttct tttatttgta gcactcggtc ttgtatgatt
    15061 taattcaaag caaatatctt tcgctcgtgc acgttcattg attaagtatt gatcaaagtt
    15121 tgcatcgtac catttttctg ctaacatttt ttctttttca gtcattacac ctttcaactc
    15181 ctaataactt atttacttgt ttaaaagtta atcaaataaa ccttcgccta tgcaactaat
    15241 acgctataac attatgaaat catgacctta tcacccttat ctatacaatt ctcgcatcaa
    15301 atactgctaa agtagtagat aaattcaata ctacagacgc attcattttt taatctatta
    15361 acgtacaatg tgagtaagag aaatataaag gagtatgata gcgatgagaa tattaattac
    15421 aggcacagtt gctatcttaa tcattctagg tttggtcaaa acgatacaag attacgaaat
    15481 gacaaacgac acgagtcgtc agttgtcaga caacaaagat gatgataaag tcatccatct
    15541 taataatttt aaaaatttac atgcgaaaga atttaaccca tctgatttct tttaagtcac
    15601 ctaagaattg caaatccaga agtcatttaa gttttacctt tcattcatac atcctttaat
    15661 attaattacg acttctttta tatagatgct aagtagagag attgttgtgc aatgtttgca
    15721 cggcaatctc tctttttctt tttaaaattg gtaaaagtaa aacgcaacga ttgacttata
    15781 tacctatagg gggtacatta gacgtgtaac aatgaatcac agggaggcaa taatgtggct
    15841 aatacgaaaa aaacaacatt agatatcact ggtatgactt gtgccgcatg ttcaaatcgt
    15901 atcgaaaaga aactgaataa acttgatgac gttaatgccc aagtgaattt aactacagag
    15961 aaagcaactg ttgagtataa ccctgatcaa catgatgtcc aagaatttat taatacgatt
    16021 caacatttag gttacggtgt cgctgtagaa actgtcgaat tagacattac aggtatgact
    16081 tgtgctgcat gctcaagccg tattgaaaaa gtgttaaata aaatggacgg cgttcaaaat
    16141 gcaacggtca atttaacaac agagcaagct aaagttgact attatcctga agaaacagat
    16201 gctgataaac ttgtcactcg cattcaaaaa ttaggttatg acgcgtctat taaagataac
    16261 aataaagatc aaacgtcacg caaagctgaa gcgctacaac ataaattgat taagcttatc
    16321 atatcagcag tattatcttt accactatta atgttaatgt ttgtacatct tttcaatatg
    16381 catataccag cactatttac gaatccatgg ttccaattta ttttagctac acctgtacaa
    16441 tttattattg gatggcaatt ttatgtaggt gcttataaaa acttaagaaa tggtggcgcc
    16501 aatatggatg tacttgttgc tgttggtaca agtgcagcat atttttacag tatttatgaa
    16561 atggttcgtt ggctaaatgg ctcaacaacg caaccgcatt tatactttga aacaagcgcc
    16621 gtactaatta ccttaatctt attcggtaag tatttagaag ctagagcgaa gtctcaaaca
    16681 accaatgcgc ttggcgaatt attaagttta caagctaaag aagcacgcat tttaaaagat
    16741 ggtaatgaag tgatgattcc tctaaatgaa gtacatgttg gagatacact tatcgttaaa
    16801 ccaggtgaaa agatacctgt tgatggcaaa attattaaag gtatgactgc catcgacgaa
    16861 tctatgttaa caggtgaatc tatccctgtt gagaagaatg ttgatgatac tgtaattggt
    16921 tcaacgatga acaaaaacgg tactattact atgacagcaa caaaagttgg cggggacact
    16981 gcgttggcaa atattattaa agttgtcgaa gaagctcaaa gttctaaagc gccgattcaa
    17041 cgattggcag atattatttc tggttatttc gttcctatcg ttgttggtat cgcactatta
    17101 acatttatcg tgtggattac tttagttaca ccaggtacat ttgaacctgc acttgttgcg
    17161 agtatttccg ttctcgtcat tgcttgtcca tgcgcattgg gacttgctac accaacttct
    17221 attatggtag gtactggtcg cgctgctgaa aatggtattt tatttaaagg tggcgagttt
    17281 gttgaacgca cacatcaaat tgataccatc gttttagata agacgggtac cattacaaat
    17341 ggtcgtccag tcgtgacaga ttatcatggt gacaatcaaa cgctacaact acttgctact
    17401 gctgaaaaag attctgaaca cccattggca gaagccattg tcaattatgc aaaagaaaag
    17461 caattaatat taactgagac aacaacattt aaagcagtac ctggccatgg tattgaagca
    17521 acgattgatc atcactatat attggttggt aaccgtaaat taatggctga caatgatatt
    17581 agcttgccta agcatatttc tgatgattta acacattatg aacgagatgg taaaactgct
    17641 atgctcattg ctgttaatta ttcattaact ggtatcatcg cagtggcaga tactgtcaaa
    17701 gatcatgcca aagatgctat aaaacaattg catgatatgg gcattgaagt tgccatgtta
    17761 actggcgata ataaaaacac tgctcaagcc attgcaaaac aagtaggcat agatactgtt
    17821 attgcagata ttttaccaga agaaaaagct gcacaaattg cgaaactaca gcaacaaggt
    17881 aagaaggttg cgatggttgg tgacggtgta aatgatgcac ctgcattagt taaagctgat
    17941 atcggtatcg ccattggtac aggtacagaa gttgccattg aagcagctga tattactatt
    18001 cttggtggcg acttgatgct tattcctaaa gccatttatg caagtaaagc aaccattcgt
    18061 aatattcgtc aaaatctatt ttgggcattc ggctataata ttgccggtat ccctatagct
    18121 gcattgggct tacttgcgcc atgggttgct ggtgctgcaa tggcactaag ttcagtaagt
    18181 gttgtcacaa acgcacttag attgaaaaag atgcgattag aaccacgccg taaagatgcc
    18241 tagattcctt aataatgaag gattcgttgg tgattctgag ataggctagt gattggctct
    18301 ataatgtc
//
LOCUS       DAMQWL010000046        18079 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.046, whole genome shotgun sequence.
ACCESSION   DAMQWL010000046 DAMQWL010000000
VERSION     DAMQWL010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 18079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18079
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.046"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            204..605
                     /locus_tag="PF788_001417"
     CDS             204..605
                     /locus_tag="PF788_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDG6303681.1"
                     /translation="MKKVNNDTVFGILQLETLLGDINSIFSEIESEYKMSREEILILL
                     TLWQKGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPVDDERTVIIHFNEKLQ
                     QEKVELLNFISDAIASRATAMQNSLNAIIAV"
     gene            complement(725..1288)
                     /locus_tag="PF788_001418"
     CDS             complement(725..1288)
                     /locus_tag="PF788_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDG6303682.1"
                     /translation="MKLERILPFSKTLIKQHITPESIVVDATCGNGNDTLFLAEQVPE
                     GHVYGFDIQDLALENTRDKVKDFNHVSLIKDGHENIEHHINDAHKGHIDAAIFNLGYL
                     PKGDKSIVTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQ
                     KHAQVLQYQFLNQRNHAPFICAIEKIS"
     gene            complement(1285..2238)
                     /locus_tag="PF788_001419"
     CDS             complement(1285..2238)
                     /locus_tag="PF788_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500380.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HDG6303683.1"
                     /translation="MGNHFQYAFENKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRD
                     GTVAHGGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTH
                     APVEVLKEKFEPVLKEPGVVGLSIGTRPDCLPDDVVEYLADLNQRTYLWVELGLQTIH
                     QSTSDLINRAHDMKTYYDGVAKLRKHNINVCTHIINGLPGEDYDMMMATAKEVAQMDV
                     QGIKIHLLHLLKGTPMVKQYDKGLLTFMTQEEYTNLVVDQLEVIPPEMIVHRITGDGP
                     IDIMVGPMWSVNKWEVLNGIDAELARRNSYQGLRYKSKVKQ"
     gene            2348..3529
                     /locus_tag="PF788_001420"
     CDS             2348..3529
                     /locus_tag="PF788_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6303684.1"
                     /translation="MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAG
                     LVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLV
                     MLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYI
                     FLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICW
                     VAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPILYLLKGNLKKQMF
                     VGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQG
                     FVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKID
                     A"
     gene            3817..6234
                     /locus_tag="PF788_001421"
     CDS             3817..6234
                     /locus_tag="PF788_001421"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDG6303685.1"
                     /translation="MLNYNHNQIEKKWQDYWDENKTFKTNDNLGQKKFYALDMFPYPS
                     GAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTK
                     KNIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCP
                     ALGTVLSNEEVIDGVSERGGHPVYRKPMKQWVLKITEYADQLLADLDDLDWPESLKDM
                     QRNWIGRSEGAKVSFDVDNTEGKVEVFTTRPDTIYGASFLVLSPEHALVNSITTDEYK
                     EKVKAYQTEASKKSDLERTDLAKDKSGVFTGAYATNPLSGEKVQIWIADYVLSTYGTG
                     AIMAVPAHDDRDYEFAKKFDLPIIEVIEGGNVEEAAYTGEGKHINSGELDGLENEAAI
                     TKAIQLLEQKGAGEKKVNYKLRDWLFSRQRYWGEPIPVIHWEDGTMTTVPEEELPLLL
                     PETDEIKPSGTGESPLANIDSFVNVVDEKTGMKGRRETNTMPQWAGSCWYYLRYIDPK
                     NENMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLAIVPTKEPFQKLFN
                     QGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSEKGLDGS
                     RRFLDRVWRLMVNEDGTLSSKIVTTNNKSLDKVYNQTVKKVTEDFETLGFNTAISQLM
                     VFINECYKVDEVYKPYIEGFVKMLAPIAPHIGEELWSKLGHEESITYQPWPTYDEALL
                     VDDEVEIVVQVNGKLRAKIKIAKDTSKEEMQEIALSNDNVKASIEGKDIMKVIAVPQK
                     LVNIVAK"
     gene            6256..6567
                     /locus_tag="PF788_001422"
     CDS             6256..6567
                     /locus_tag="PF788_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDG6303686.1"
                     /translation="MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMD
                     TIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKS
                     I"
     gene            6893..13453
                     /gene="sasC"
                     /locus_tag="PF788_001423"
     CDS             6893..13453
                     /gene="sasC"
                     /locus_tag="PF788_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG-anchored repetitive surface protein SasC"
                     /protein_id="HDG6303687.1"
                     /translation="MNLLKKNKYSIRKYKVGIFSTLIGTVLLLSNPNGAQALTTDNNV
                     QSDTNQATPVNSQDKDVANNRGLANSAQNTPNQSATTNQATNQALVNHNNGSIVNQAT
                     PTSVQSSTPSAQNNNHTDGNTTATETVSNANNNDVVSNNTALNVPTKTNENGSGGHLT
                     LKEIQEDVRHSSNKPELVAIAEPASNRPKKRSRRAAPADPNATPADPAAAAVGNGGAP
                     VAITAPYTPTTDPNANNAGQNAPNEVLSFDDNGIRPSTNRSVPTVNVVNNLPGFTLIN
                     GGKVGVFSHAMVRTSMFDSGDNKNYQAQGNVIALGRIHGTDTNDHGDFNGIEKALTVN
                     PNSELIFEFNTMTTKNGQGATNVIIKNADTNDTIAEKTVEGGPTLRLFKVPDNVRNLK
                     IQFVPKNDAITDARGIYQLKDGYKYYSFVDSIGLHSGSHVFVERRTMDPTATNNKEFT
                     VTTSLKNNGNSGASLDTNDFVYQVQLPEGVEYVNNSLTKDFPSNNSGVDVNDMNVTYD
                     AANRVITIKSTGGGTANSPARLMPDKILDLRYKLRVNNVPTPRTVTFNETLTYKTYTQ
                     DFINSAAESHTVSTNPYTIDIIMNKDALQAEVDRRIQQADYTFASLDIFNGLKRRAQT
                     ILDENRNNVPLNKRVSQAYIDSLTNQMQHTLIRSVDAENAVNKKVDQMEDLVNQNDEL
                     TDEEKQAAIQVIEEHKNEIIGNIGDQTTDDGVTRIKDQGIQTLSGDTATPVVKPNAKK
                     AIRDKATKQREIINATPDVTEDEIQDALNQLATDETDAIDNVTNATTNADVETAKNNG
                     INTIGAVVPQVTHKKAARDAINQATATKRQQINSNREATQEEKNAALNELTQATNHAL
                     EQINQATTNADVDNAKGDGLNAINPIAPVTVVKQAARDAVSHDAQQHIAEINANPDAT
                     QEERQAAIDKVNAAVTAANTNILNANTNADVEQVKTNAIQGIQAITPATKVKTDAKNA
                     IDKSAETQHNTIFNNNDATLEEQQAAQQLLDQAVATAKQNINAADTNQEVAQAKDQGT
                     QNIVVIQPATQVKTDTRNVVNDKAREAITNINATTGATREEKQEAINRVNTLKNRALT
                     DIGVTSTTAMVNSIRDDAVNQIGAVQPHVTKKQTATGVLNDLATAKKQEINQNTNATT
                     EEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALAQI
                     NQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN
                     NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQLKDQAINQ
                     INQNQTNDQVDTTTNQAVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQIDNSLDSTDN
                     EKEVASQALAKEKEKALAAIDQAQTNSQVNQAATNGVSAIKIIQPETKVKPAAREKIN
                     QKANELRAKINQDKEATAEERQVALDKINEFVNQAMTDITNNRTNQQVDDTTSQALDS
                     IALVTPDHIVRAAARDAVKQQYEAKKREIEQAEHATDEEKQVALNQLANNEKRALQNI
                     DQAIANNDVKRVETNGIATLKGVQPHIVIKPEAQQAIKASAENQVESIKDTPHATVDE
                     LDEANQLISDTLKQAQQEIENTNQDAAVTDVRNQTIKAIEQIKPKVRRKRAALDSIEE
                     NNKNQLDAIRNTLDTTQDERDVAIDTLNKIVNTIKNDIAQNKTNAEVDRTETDGNDNI
                     KVILPKVQVKPAARQSVGVKAEAQNALIDQSDLSTEEERLAAKHLVEQALNQAIDQIN
                     HADKTAQVNQDSINAQNIISKIKPATTVKATALQQIQNIATNKINLIKANNEATDEEQ
                     NIAIAQVEKELIKAKQQIASAVTNADVAYLLHDEKNEIREIEPVINRKASAREQLTTL
                     FNDKKQAIEANIQATVEERNSILAQLQNIYDTAIGQIDQDRSNAQVDKTASLNLQTIH
                     DLDVHPIKKPDAEKTINDDLARVTALVQNYRKVSNRNKADALKAITALKLQMDEELKT
                     ARTNADVDAVLKRFNVALSDIEAVITEKENSLLRIDNIAQQTYAKFKAIATPEQLAKV
                     KVLIDQYVADGNRMIDEDATLNDIKQHTQFIVDEILAIKLPAEATKVSPKEIQPAPKV
                     CTPIKKEETHESRKVEKELPNTGSEGMDLPLKEFALITGAALLARRRTKNEKES"
     gene            complement(13570..14838)
                     /locus_tag="PF788_001424"
     CDS             complement(13570..14838)
                     /locus_tag="PF788_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDG6303688.1"
                     /translation="MYQTIIIGGGPSGLMAAVAASEQSSSVLLIEKKKGLGRKLKISG
                     GGRCNVTNRLPYAEIIKNIPGNGKFLYSPFSIFDNESIIDFFESRGVKLKEEDHGRMF
                     PVSNKAQDVVDTLVTTIERQHVTIKEEEAVSRIEVNTDQTFTVHTQNNSYESHSLVIA
                     TGGTSVPQTGSTGDGYKFAQDLGHTITELFPTEVPITSAEPFIKSNRLKGLSLKDVEL
                     SVLKKNGKKHISHQMDMLFTHFGISGPAALRCSQFVYKEQKNQKTQHISMAIDAFPEL
                     NHEQLKQHITSLLSDTPDKIIKNSLHGLIEERYLLFMLEQAGIDENTTSHHLSNQQLN
                     DLVNMFKGFVFKVNGTLPIDKAFVTGGGVSLKEIQPKTMMSKLVPGLFLCGEVLDIHG
                     YTGGYNITSALVTGHVAGLYAGHYSHASME"
     gene            15245..16906
                     /locus_tag="PF788_001425"
     CDS             15245..16906
                     /locus_tag="PF788_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HDG6303689.1"
                     /translation="MSESKEMVRGTFLITISILITKVLGVLFIIPFNYLIGGQENMAP
                     FTYAYAPYNIAIAVATAGVPLAASKYVAKYNAIGAYKVSQKFYKSSFIVMSITGVLGF
                     LVLYFLAPYISELTLARNIHDKNGWSVDDITWIIRIISMVVIFIPVLATWRGIFQGYK
                     SMGPTAVSEVTEQIARVIFILIGSYLVLNVFDGSILLANGIATFAAAVGAIIGIFTLW
                     YYWRKRKHNIDRMVESDYTDIDVSYGKMYKEIIAYSIPFVIVSLNYPLFNLVDQFTHN
                     GALSLVGIPSQLQDIFFNMLNMSTNKIVMIPTSLSAGFAVSLIPYITKTFAEGRLHEM
                     HHQIRTSIGVLMFITVPASIGIMALAQPLFTVFYGYDPIVLGHDPNHDGSRLLFYYAP
                     VAILISLLSVTASMLQGIDKQKLTVYVILASVVIKLALNYPLIMLFHTPGAILSTSIA
                     LLFAIGCNFYILKKYAKFKFSYSWIHFAKIFLYSFIMMLGVELVFFLANLFLEPTKLG
                     YLIIIILGVTVGILIYGTITIKTRLADEFLGEIPEKLRRRVRFLR"
     gene            16903..17598
                     /locus_tag="PF788_001426"
     CDS             16903..17598
                     /locus_tag="PF788_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDG6303690.1"
                     /translation="MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPE
                     NDKITVRGELIEYIENVYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLD
                     KDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLTDGKVK
                     PAILTYIDNQTSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYR
                     LLTENDFDKLNYK"
     gene            17615..18037
                     /locus_tag="PF788_001427"
     CDS             17615..18037
                     /locus_tag="PF788_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HDG6303691.1"
                     /translation="MAKGNLFKAILGIGGAVAAVLVTRKDSRDKLKAEYNKYKQDPQS
                     YKDNAKDKATQLGTIANETIKEVKTNPKEYANRLKNNPKAFFKEEKSKFTEYDNKTDE
                     SIEKGKFDDEGGAAPNNNLRIVTEEDLKKNKNALSDKE"
BASE COUNT         6635 a         2767 c         3301 g         5376 t
ORIGIN      
        1 atttctaaat attaactcta ttgattattg gtttttatac ttatttaatt ttattcaact
       61 ttgacaattg aatagaaagc aagtttattt acacttgtag ttttatgcat aagttagcac
      121 atacaagttt tgggattgtt gggatgtttg ttaatacttg tatagtagct aaatatgtga
      181 ttattaattg ggagatgttt agcatgaaaa aagtaaataa cgacactgta tttggaattt
      241 tgcaattaga aacacttttg ggtgacatta actcaatttt cagcgagatt gaaagcgaat
      301 acaaaatgtc tagagaagaa attttaattt tactaacttt atggcaaaaa ggttctatga
      361 cgcttaaaga aatggacaga tttgttgaag ttaaaccgta taagcgtacg agaacgtata
      421 ataatttagt tgaattagaa tggatttaca aagagcgtcc tgttgacgat gaaagaacag
      481 ttattattca tttcaatgaa aagttacaac aagagaaagt agagttgttg aatttcatca
      541 gtgatgcgat tgcaagtaga gcaacagcaa tgcaaaatag tttaaacgca attattgctg
      601 tgtaagttta atagcataaa aagaggtttt cattaagttg aaaacctctt tttgttgttg
      661 gcattaattt ttcaaatgtt gactactcaa tcctaaatta taaatagtat agcgcagcaa
      721 atgcttaaga aattttttct atggcacaaa tgaatggagc atgattacgt tggtttaaaa
      781 attgatattg caaaacttgc gcatgctttt gatccaaagt actcaagtaa tcaagcaatg
      841 catgcttctc aatttgtcct tcgctatgac catgatatat aacaagtaca ataatacctt
      901 caattgacat taatgatagc aatgaattaa tagcttggat tgtcgtgtca ggctttgtca
      961 cgatagattt atcaccttta ggcaaataac ctaggttaaa gatggctgca tcaatatgac
     1021 ctttatgtgc atcatttata tgatgttcaa tattttcatg tccatctttt attaaagaaa
     1081 catgattgaa atccttaact ttatcacgtg tattttccaa agctaaatct tgaatgtcga
     1141 aaccataaac atgtccttct ggtacttgtt cggctaaaaa taaagtgtca ttgccgttac
     1201 cgcaagttgc gtctacaaca atactttctg gtgttatatg ttgtttaata agtgtttttg
     1261 aaaaagggag tatacgttct aatttcattg cttcacctta gacttgtaac gcaagccttg
     1321 ataagaattt ctacgtgcta attcagcatc gatgccattt aatacttccc atttattaac
     1381 actccacatt ggacctacca tgatatctat tggaccatca ccggtaattc ggtgaacgat
     1441 catttcaggg ggaatcactt ctaattggtc cacaactagg tttgtgtact cttcttgagt
     1501 cataaaagtt aataaacctt tatcgtattg ttttaccatc ggtgtacctt ttaacaaatg
     1561 aagtaaatga attttaatac cttgtacatc catttgtgca acttctttgg cagtagccat
     1621 catcatgtca tagtcttcgc caggtaagcc attaatgatg tgtgtacata cattgatatt
     1681 atgcttacgt aattttgcca caccatcata ataagttttc atatcatggg cacgattgat
     1741 taaatcagat gttgactgat ggattgtttg tagtcctaat tcaacccata agtatgttcg
     1801 ttgattcaaa tctgctaaat attcgacaac atcgtctggt agacagtcag gacgcgtacc
     1861 aatagataat cccacaacac ccggttcttt aagtacaggt tcgaattttt cttttaatac
     1921 ttcaaccggt gcatgtgtat ttgtaaatgc ctgaaaataa gcaatatatt ttccttcgtg
     1981 ccatttctca tgcatctttt ctttaatttc tttaaattgt actgcgattg aatctgcacg
     2041 attacctgca aagtctccgc tacctgcagc agaacaaaat gtacatccac catgtgctac
     2101 agtgccatcg cggttaggac agtcaaaccc gccatccaat gcaactttaa atattttttg
     2161 tccaaattta ttttttaaat ggtaattcca tgtgtgataa cgtttgtttt caaaagcgta
     2221 ttggaaatga ttgcccatat gtcattttcc tttctataaa aaaagagttc taagtacaga
     2281 ttttaacata ttttaatgtt atagtgttta ttatagtttg acaaaaaaga gagaggaact
     2341 atgaaatatg aatataccta aatcagtctg gtggctagta attggcatgg cgttaaatat
     2401 tactggttcc agttttttgt ggcctttaaa tacaatttat atgaaacaag aacttggaaa
     2461 aagtttaact gttgctggtt tagtgctaat gataaattca tttggcatgg ttattggaaa
     2521 cttattaggt ggttcactat ttgataaatt aggtggatac aagacgattt taattggaac
     2581 tttcacttgt ctttgtagta caacgctact taatttcttt cacgggtggc cttggtatgc
     2641 tgtatggctt gtaatgttag ggtttggtgg cggaatgatt attcctgcga tatacgctat
     2701 ggctggagca gtgtggccaa atggcggaag acaaacgttt aatgcgatat acttagcgca
     2761 aaatattggt gtggctgtcg gtgctgcaat gggcggcttt gtcgcagaat ttagctttaa
     2821 ctatatcttt ttagccaatc ttattatgta tgttgtgttt gcgcttgtcg cggtaacgca
     2881 atttaatatt gaaattaatg cgaaagttaa atatccaact catttagata ttactggtaa
     2941 aaagaataaa gcaagattta tttcattagt actaatttgt gcaatgtttg caatttgttg
     3001 ggttgcatat attcaatggg agtctacaat cgcttcattt acacaatcta ttaatatttc
     3061 aatggcacaa tatagtgttt tatggacaat taacggaata atgattttag tagcacaacc
     3121 attaattaaa ccgattctct atctgttaaa aggaaactta aagaagcaaa tgtttgtcgg
     3181 catcatcatt tttatgttgt cgttctttgt cacgagtttt gccgaaaact ttacaatatt
     3241 tgttgtcggt atgattattt taacttttgg agaaatgttt gtatggccag cagttccaac
     3301 tatagccaat cagttagcgc cagatggtaa gcaaggacag taccaaggtt ttgtgaattc
     3361 agctgctaca gtaggaaaag catttggtcc atttcttggt ggtgtattag ttgatgcgtt
     3421 taatatgcgc atgatgttta tcggtatgat gctactactt gtatttgcat taatattatt
     3481 aatggttttc aaggagaata atacgcaacc taaaaaaata gatgcataat gagtaaatag
     3541 aattaacgtt atagacttga aataaatgtc gttataacat aatattaatt tgtataattt
     3601 aatttcgttt ggagcttttc tacagaaagc tagtgatgct gagagctagt gttaaggact
     3661 aaatgtaaat cgtattaatt ttaaattgaa tgaatgacat ctcttactat taaaatgagt
     3721 gcacaatttt tgtgaaatag ggtggtaacg cggcaaatgt cgtccctatg taaatagaat
     3781 agttagaggt gtctttttta ttgaatagga ggaaatgtgt tgaattataa ccacaatcaa
     3841 attgaaaaga aatggcaaga ctattgggac gaaaataaaa catttaaaac aaatgataac
     3901 ttaggtcaaa agaaatttta tgctttagac atgtttccat atccatcagg tgctggttta
     3961 catgttggac atcctgaggg ctatacagca acagatatca tttcaagata taaaagaatg
     4021 caaggatata atgtattaca tccgatgggg tgggatgcat tcggattacc agcagagcaa
     4081 tatgctttag acactggcaa cgacccacgt gaatttacaa agaaaaatat ccaaactttt
     4141 aaacgacaaa ttaaagaatt agggttcagt tatgattggg atcgtgaagt taatacaaca
     4201 gatccagaat actataaatg gacacagtgg attttcatac agttatataa caaaggttta
     4261 gcatacgttg atgaagttgc agttaactgg tgtccagcat taggcactgt tttatctaac
     4321 gaagaagtga ttgatggtgt ctctgaacgt ggtggacatc cagtttatcg taagccgatg
     4381 aaacaatggg tacttaaaat cacagaatat gcagatcaat tattagcaga tttagatgat
     4441 ttagattggc ctgagtcttt aaaagatatg cagcgcaatt ggattggacg ttctgaaggg
     4501 gccaaagttt catttgatgt agataatacg gaaggaaaag tagaagtatt tacgactaga
     4561 ccagatacaa tctatggtgc atcattctta gtcttaagtc ctgaacatgc attagttaat
     4621 tcaattacaa cagatgaata taaagaaaaa gtaaaagctt atcaaacaga agcttctaaa
     4681 aagtcagatt tagaacgtac agatttagca aaagataaat caggtgtatt tactggtgca
     4741 tatgcaacta atcctttatc tggtgaaaaa gtacaaattt ggattgctga ttatgtatta
     4801 tcaacatatg gtactggagc aattatggca gtaccagcgc atgatgacag agattatgaa
     4861 tttgctaaaa agtttgattt gccaatcatt gaagtcatcg aaggtggaaa tgttgaagaa
     4921 gcagcataca ctggtgaagg taaacatatt aattctggtg aacttgatgg tttagaaaat
     4981 gaagcggcaa ttactaaagc tattcaatta ttagagcaaa aaggtgctgg cgaaaagaaa
     5041 gttaattaca aattaagaga ttggttattc agtcgtcagc gttattgggg cgaaccaatt
     5101 cctgtcattc attgggaaga tggaacaatg acaactgttc ctgaagaaga gctaccattg
     5161 ttgttacctg aaacagatga aatcaagcca tcagggactg gtgagtctcc actagctaat
     5221 attgattcat ttgtaaatgt tgtagatgaa aaaacaggta tgaaaggacg tcgtgaaaca
     5281 aatacaatgc cacaatgggc aggtagttgt tggtattatt tacgttacat cgatcctaaa
     5341 aatgaaaata tgttagcaga tcctgaaaaa ttaaaacatt ggttacctgt tgatttatat
     5401 atcggtggag tagaacatgc ggttcttcac ttattatatg caagattttg gcataaagtc
     5461 ctttatgatt tggctatcgt acctactaaa gaacctttcc aaaaattatt taaccaaggt
     5521 atgattttag gagaaggtaa tgagaagatg agtaaatcta aaggaaatgt aatcaatcct
     5581 gatgatatag tacagtctca tggtgcagat actttgcgtc tttacgaaat gtttatggga
     5641 cctttagatg ctgcaattgc atggagtgaa aaaggattag atgggtctcg tcgattctta
     5701 gatcgcgtat ggcgtttaat ggtaaatgaa gatgggacat tgagttcaaa aattgtaact
     5761 acaaataata aatctttaga taaagtttat aaccaaactg ttaaaaaggt aacagaagac
     5821 tttgaaacat taggatttaa tactgctatt agtcaattaa tggtatttat taatgagtgt
     5881 tataaagttg atgaagttta taaaccttac attgaaggct tcgttaaaat gttagcacct
     5941 attgcaccac atatcggtga agaattatgg tcaaaattag gacatgaaga gtctattacg
     6001 taccaacctt ggccaactta tgacgaagca ctacttgtag atgatgaagt agaaatcgtt
     6061 gttcaagtga atggtaaatt gagagctaaa attaaaattg ctaaagatac atcaaaagaa
     6121 gaaatgcaag aaattgcctt atctaatgac aatgttaaag cgagtattga aggtaaagac
     6181 atcatgaaag tcatcgctgt tcctcaaaaa ttagtcaata ttgtagctaa ataatgtttt
     6241 aaggaggact ttgaaatgaa gtcaattact acagatgaat taaaaaataa acttttagaa
     6301 tctaaaccag ttcaaattgt tgatgttcgt actgatgaag aaacagcaat gggatatatt
     6361 cctaatgcaa agttaattcc aatggatacc attccggata atttaaattc atttaataaa
     6421 aatgaaatat attatattgt atgtgctggt ggagttcgaa gcgctaaagt tgtagaatat
     6481 ttagaggcaa atggcattga tgccgtaaat gtcgaaggcg gcatgcacgc atggggcgat
     6541 gaaggtttgg aaataaaaag tatttaaagt agtgacataa tttaaaataa tattacattt
     6601 gtaatgacac caagtaacgt ttcggttgct tggtgttttt tggtatgaat tactttctgt
     6661 tacaaaacaa tctaaagcgt tcttgttatg ttttattaag attttaatta caaaacggaa
     6721 actaaattgt aataaaataa aactttattt tataaaatga tgatgataaa attgagtgaa
     6781 cttaaaatat tgtacaaaat aatatagcta taaatataat atgagggagc gtatattttt
     6841 agcataattc ttaacaacac agcagagaac agacaaccag gaggaaaatg aaatgaattt
     6901 gttaaagaaa aataaatata gtattaggaa gtataaagta ggcatattct ctactttaat
     6961 cggaacagtt ttattacttt caaacccaaa tggtgcacaa gccttaacta cggataataa
     7021 tgtacaaagc gatactaatc aagcaacacc tgtaaattca caagataaag atgttgctaa
     7081 taatagaggt ttagcaaata gtgcgcagaa tacacctaat caatctgcaa caaccaatca
     7141 agcaacgaat caagcattgg ttaatcataa taatggtagt atagtaaatc aagctacgcc
     7201 aacatcagtg caatcaagta cgccttcagc acaaaacaat aatcatacag atggcaatac
     7261 aacagcaact gagacagtgt caaacgctaa taataatgat gtagtgtcga ataataccgc
     7321 attaaatgta ccaactaaaa caaatgaaaa tggttcagga ggacatctaa ctttaaagga
     7381 aattcaagaa gatgttcgtc attcttcaaa taaaccagag ctagttgcaa ttgctgaacc
     7441 agcatctaat agaccgaaaa agagaagtag acgtgcggca ccggcagatc ctaatgcaac
     7501 tccagcagat ccagcggctg cagcggtagg aaacggtggt gcaccagttg caattacagc
     7561 gccatatacg ccaacaactg atcctaatgc caataatgca ggacaaaatg cacctaacga
     7621 agtgctgtca tttgatgaca atggtattag accaagtacc aaccgttctg tgccaacagt
     7681 aaacgttgtt aataacttgc cgggcttcac actaatcaat ggtggcaaag taggggtgtt
     7741 tagtcatgca atggtaagaa cgagcatgtt tgattcagga gataataaga actatcaagc
     7801 acaaggaaat gtaattgcat taggtcgtat acatggaact gatacgaatg accatggcga
     7861 ttttaatggt atcgagaaag cattaacagt aaatccgaat tctgaattaa tctttgaatt
     7921 taatacaatg actactaaaa acggtcaagg cgcaacaaat gttattatca aaaatgctga
     7981 tactaatgat acgattgctg aaaagactgt tgaaggcggt ccaactttgc gtttatttaa
     8041 agtacctgat aatgtgagaa atctcaaaat tcaatttgta cctaaaaatg acgcaataac
     8101 agatgcgcgt ggcatttatc aactaaaaga tggttacaaa tactatagct ttgttgactc
     8161 tatcggactt cattctgggt cacatgtttt tgttgaaaga cgaacaatgg atccaacagc
     8221 aacaaataat aaagagttta ctgtaacaac atcattaaag aataatggta attctggtgc
     8281 ttctctagat acaaatgact ttgtatatca agttcaatta cctgaaggtg ttgaatatgt
     8341 gaacaattca ttgactaaag attttccaag taacaattca ggcgttgatg ttaatgatat
     8401 gaatgttaca tatgatgcag caaatcgtgt gataacaatt aaaagtactg gaggaggtac
     8461 agcaaactct ccggcacgac ttatgcctga taaaatactc gatttaagat ataaattacg
     8521 tgtaaataat gtgccgacac caagaacagt aacatttaac gagacattaa cgtataaaac
     8581 atatacacaa gatttcatta attcagctgc agaaagtcat actgtaagta caaatccata
     8641 tactatcgat atcatcatga ataaagatgc attacaagcc gaagttgaca gacgtattca
     8701 acaagctgat tatacatttg cgtcattaga tatctttaat ggtctgaaac gacgcgcaca
     8761 aacgatttta gatgaaaatc gtaacaatgt accattaaat aaaagagttt ctcaagcata
     8821 tattgattca ttaactaatc aaatgcaaca tacgttaatt cgaagtgttg atgctgaaaa
     8881 tgcagttaat aaaaaagttg accaaatgga agatttagtt aatcaaaatg atgaattgac
     8941 agatgaagaa aaacaagcag caatacaagt tatcgaggaa cataaaaatg aaataattgg
     9001 taatattggt gaccaaacga ctgatgatgg cgttactaga atcaaagatc aaggtataca
     9061 gaccttaagt ggggatactg caacaccggt tgttaaacca aatgctaaaa aagcaatacg
     9121 tgataaagca acgaaacaaa gggaaattat caatgcaaca ccagatgtta ctgaagacga
     9181 gattcaagat gcactaaatc aattagctac ggatgaaaca gatgctattg ataatgttac
     9241 gaatgctact acaaatgctg acgttgaaac agctaaaaat aatggcatca atactattgg
     9301 agcagttgtt cctcaagtaa ctcataaaaa agctgcaaga gatgcaatta accaagcaac
     9361 agcaacgaaa agacaacaaa taaatagtaa tagagaagca actcaggaag agaaaaatgc
     9421 agcattgaac gaattaactc aagcaaccaa ccatgcttta gaacaaatca atcaagcaac
     9481 aacaaatgct gatgttgata acgccaaagg agatggtcta aatgccatta atccaattgc
     9541 tcctgtaact gttgttaagc aagctgcaag ggatgccgta tcacatgatg cacaacaaca
     9601 tatcgcagag atcaatgcta atcctgatgc gactcaagaa gaaagacaag cagcaattga
     9661 caaagtgaat gctgctgtaa ctgcagcaaa cacaaacatt ttaaacgcta ataccaatgc
     9721 tgatgttgaa caagtaaaga caaatgcgat tcaaggaata caagcaatta caccagctac
     9781 aaaagtaaaa acagatgcaa aaaatgccat cgataaaagt gcggaaacgc aacataatac
     9841 gatatttaat aataatgatg cgacgctcga agaacaacaa gcagcacaac aattacttga
     9901 tcaagctgta gccacagcga agcaaaatat taatgcagca gatacgaatc aagaagttgc
     9961 acaagcaaaa gatcagggca cacaaaatat agtagtgatt caaccggcaa cacaagttaa
    10021 aacggatact cgcaatgttg taaatgataa agcgcgagag gcgataacaa atatcaatgc
    10081 tacaactggc gcgactcgag aagagaaaca agaagcgata aatcgtgtca atacacttaa
    10141 aaatagagca ttaactgata ttggtgtgac gtctactact gcgatggtca atagtattag
    10201 agacgatgca gtcaatcaaa tcggcgcagt tcaaccgcat gtaacgaaga aacaaactgc
    10261 tacaggtgta ttaaatgatt tagcaactgc taaaaagcaa gaaattaatc aaaacacaaa
    10321 tgcaacaact gaagaaaagc aagtggcttt aaatcaagtg gatcaagagt tagcaacggc
    10381 aattaataat ataaatcaag ctgatacaaa tgcggaagta gatcaagcgc aacaattagg
    10441 tacaaaagca attaatgcga ttcagccaaa tattgttaaa aaacctgcag cattagcaca
    10501 aatcaatcag cattataatg ctaaattagc tgaaatcaat gctacaccag atgcaacgaa
    10561 tgatgagaaa aatgctgcga tcaatacttt aaatcaagac agacaacaag ctattgaaag
    10621 tattaaacaa gctaacacaa atgcagaagt agaccaagct gcgacagtag cagagaataa
    10681 tatcgatgct gttcaagttg atgtagtaaa aaaacaagca gcgcgagata aaatcactgc
    10741 tgaagtggcg aagcgtattg aagcggttaa acaaacacct aatgcaactg acgaagaaaa
    10801 gcaggctgct gttaatcaaa tcaatcaact taaagatcaa gcaattaatc aaattaatca
    10861 aaaccaaaca aatgatcagg tagacacaac tacaaatcaa gcggtaaatg ctatagataa
    10921 tgttgaagct gaagtagtaa ttaaaccaaa ggcaattgca gatattgaaa aagctgttaa
    10981 agaaaagcaa cagcaaattg ataatagtct tgattcaaca gataatgaga aagaagttgc
    11041 ttcacaagca ttagctaaag aaaaagaaaa agcacttgca gctattgacc aagctcaaac
    11101 gaatagtcag gtgaatcaag cagcaacaaa tggtgtatca gcgattaaaa ttattcaacc
    11161 tgaaacaaaa gttaaaccag ctgcacgtga aaaaatcaat caaaaagcga atgaattacg
    11221 tgctaagatt aatcaggata aagaagcaac agcagaagaa agacaagtag cactagataa
    11281 aatcaatgaa tttgtaaatc aagccatgac agatattacg aataatagaa caaatcaaca
    11341 agttgatgat acaacaagtc aagcgcttga tagcattgct ttagtgacgc ctgaccatat
    11401 tgttagagca gctgctagag atgcagttaa gcaacaatat gaagctaaaa agcgcgaaat
    11461 tgagcaagcg gaacatgcga ctgatgaaga aaaacaagtt gctttaaatc aattagcgaa
    11521 taatgaaaaa cgtgcattac aaaacatcga tcaagcaata gcgaataatg atgtgaaacg
    11581 tgttgaaaca aatggcattg ctacactaaa aggtgtacaa cctcatattg taattaagcc
    11641 tgaagcacaa caagcaataa aagcaagtgc agaaaatcaa gtagaatcaa taaaagatac
    11701 accacatgca acagttgatg aattagatga agcgaatcaa ttaattagcg acacactcaa
    11761 acaagcgcaa caagaaatag aaaatacaaa tcaagatgct gctgttactg atgttagaaa
    11821 tcaaacaatc aaggcaatag agcaaataaa acctaaagta agacgtaaac gagctgcgct
    11881 tgatagcatt gaagaaaata ataaaaatca actcgatgca atccgaaata cgttggatac
    11941 tactcaagat gaaagagatg ttgctattga tactttaaat aaaattgtaa atacaattaa
    12001 aaatgacatt gcacaaaaca aaacgaatgc agaagtggat cgaactgaga ctgatggcaa
    12061 cgacaacatc aaagtgattt tacctaaagt tcaagttaaa ccagcagcgc gtcaatctgt
    12121 tggtgtaaaa gccgaagctc aaaatgcact aatcgatcaa agcgatttat caactgaaga
    12181 agaaagacta gctgctaaac atttagtaga acaagcactt aatcaggcta ttgatcagat
    12241 caatcatgca gataagactg cccaagttaa tcaagatagt ataaatgctc aaaatattat
    12301 ttcaaaaatt aaaccagcga caacagttaa agcaacagca ttacaacaaa ttcaaaatat
    12361 cgctacaaat aaaattaatt taattaaagc aaataacgaa gcgacagatg aagaacaaaa
    12421 tattgcaata gcacaagttg aaaaagagtt aattaaagct aaacaacaaa ttgctagtgc
    12481 agtgactaat gcagatgtgg catatttatt gcatgatgag aaaaacgaaa ttcgtgaaat
    12541 cgaacctgtt attaacagaa aggcgtctgc tcgagaacaa ttgacaacat tattcaacga
    12601 taaaaaacaa gcaattgaag cgaatattca agcaacggta gaagaaagaa atagtatatt
    12661 agcacagtta caaaatattt atgacactgc tattggacaa attgatcaag atcgtagcaa
    12721 tgcacaagtt gataaaacag catcattaaa tctacaaaca atacatgatt tagatgtaca
    12781 tcctattaaa aagccagatg ctgaaaaaac gattaatgat gatcttgcac gcgtcactgc
    12841 tttagtgcaa aattatcgaa aagtaagtaa tcgtaataag gctgatgcat taaaagctat
    12901 aactgcttta aaattacaaa tggatgaaga attaaaaaca gcacgcacta atgctgatgt
    12961 tgatgcagtt ttaaaacgat ttaatgttgc attaagcgat atagaagcag taattactga
    13021 aaaagaaaat agcttactgc gaattgataa cattgctcaa caaacatatg cgaaattcaa
    13081 agcgatcgca acaccagaac aattagctaa agtaaaagta ttaattgatc aatatgttgc
    13141 agatggcaat agaatgattg atgaagatgc gacattaaat gacatcaaac aacacacgca
    13201 attcattgtt gatgaaattt tagcaattaa attaccagct gaagcgacga aagtatcacc
    13261 aaaagaaatt cagccagctc caaaagtttg tacgcctatt aaaaaagaag agacacatga
    13321 atcgcgcaaa gttgaaaaag aacttccaaa tacaggttct gaaggaatgg atttaccatt
    13381 gaaagaattt gcactgatta caggtgcggc tttgttagct agaagacgta ctaaaaacga
    13441 aaaagaatca taattaacga aatgacctta atataacgac actttttagt gactcagtta
    13501 tattaaggtc atttttattt gaatgaaaaa gttgatctac taaagagaat cgaaccaaat
    13561 tttatactat tattccattg atgcatgtga gtaatgtccg gcatataatc cagcgacatg
    13621 tcctgttacg agtgcacttg taatattata accaccagta taaccatgta tatctaatac
    13681 ttcaccacat aaaaataatc ccggaactaa tttagacatc attgttttag gttgaatttc
    13741 tttaagtgac acaccaccac ctgtgacaaa tgccttatct ataggtaatg tcccgttcac
    13801 cttaaataca aaccctttaa acatatttac taagtcgttc aattgttgat ttgataagtg
    13861 atgtgatgtg gtattttcat cgattcctgc ttgttccagc atgaacagta agtagcgctc
    13921 ttcaattaga ccatgcaaac tgtttttaat gattttatct ggtgtgtccg ataataatga
    13981 tgtgatgtgt tgttttaatt gttcatggtt taattcagga aatgcatcga ttgccataga
    14041 aatgtgctgt gtcttttgat ttttttgttc tttataaaca aactgactac atcttaatgc
    14101 agctggacca ctgataccaa aatgagtaaa taacatatcc atttgatgac tgatgtgttt
    14161 tttaccattt ttcttaagta ctgacaattc aacatctttt aaacttaaac cttttagacg
    14221 attggatttg atgaaaggtt cagctgatgt aattggaact tcggtcggga ataactcagt
    14281 aatggtatga cctaaatctt gtgcgaactt ataaccatca ccagttgaac cagtttgagg
    14341 gacacttgta ccacctgtag caatcactag cgaatggctt tcataactat tattttgagt
    14401 atgtacagtg aaagtttggt ctgtattaac ttcgattcta ctaacagctt cttcttcttt
    14461 aatcgttaca tgttggcgtt cgatagttgt cactaatgta tcaaccacgt cttgtgcttt
    14521 gttggaaact ggaaacatac gcccgtgatc ttcttctttt aatttaacac ccctagactc
    14581 aaaaaaatct atgatggatt cattatcaaa aattgaaaag ggactatata aaaatttccc
    14641 atttccagga atgttcttaa taatttcagc atatggtaat cgattagtta cgttacatct
    14701 accgccacca gatattttga gtttacgacc tagacctttc tttttttcaa tgagtaacac
    14761 actgctactt tgttcgcttg cagctactgc cgccattaag ccgctaggtc cgcctccgat
    14821 aataattgtt tgatacatat acgcttcctc caaatttgtt actggacatt caattgctat
    14881 tttatagtac ttttttaaac tttgctatat ctcttgtgtt atgagatgac aattatgttg
    14941 aatatattta taatgtgaac ttcataaaaa atgaagatgt atgtgtatga taagaatgat
    15001 ttttctactg ttatgcgatg ttcatctcaa atagtagtat aatgtttata tgaaatttcg
    15061 taatattcta atcaaaatct agtattcaat gacaatgtgt tgataatttt gttatgataa
    15121 ttcattgaat atacgacaat gaaataaagt tttgtgatat attcataata atgaaaaatg
    15181 attttacaga gaaacagctt ttagtttaca aaactttaat aaacatgaga tagggagatt
    15241 cgtaatgagt gaaagtaaag aaatggtgcg tggaaccttt ttaattacca ttagtatatt
    15301 aattaccaag gtattgggcg tactttttat cattccattc aactatttaa ttggtggaca
    15361 agaaaatatg gcgccgttca catacgctta tgcaccatat aatattgcaa ttgcagttgc
    15421 gacagcaggt gtaccattag cagcttcgaa atatgttgcg aaatataatg ctattggggc
    15481 atataaagta agtcagaaat tttataaatc gagttttatt gtaatgagta ttaccggtgt
    15541 tttaggtttc ttggtactgt atttcttagc accttatatt tctgaattaa cattagctag
    15601 aaacattcat gataaaaacg gttggtcagt cgatgatatt acttggatta taagaatcat
    15661 tagtatggtt gttatcttta ttcctgtatt agcgacatgg agagggatat tccaaggtta
    15721 taaatctatg gggccaacag cagtgtcaga agtaactgag caaattgcac gcgtgatttt
    15781 catattaatc ggaagttatt tagtactaaa tgtctttgat ggctctattt tattagccaa
    15841 tggtattgct acttttgcag cagcagttgg tgcgattatt ggtatattca cactctggta
    15901 ttactggaga aagcgtaagc ataatattga tcgtatggtc gaatctgatt acacagatat
    15961 agatgtgtca tatggcaaga tgtataaaga aattattgct tatagtatac cgttcgttat
    16021 tgtaagtttg aattatccat tatttaactt agtagatcaa tttacacata acggtgcttt
    16081 atctttagtt ggtatacctt cacagttaca agatatattc tttaatatgc taaatatgtc
    16141 aactaataaa attgtaatga ttccgacatc attaagtgct ggttttgcag tgagtttaat
    16201 tccttatatt acaaaaacat ttgcagaagg tcgcttacat gaaatgcatc atcaaattag
    16261 aacatctatt ggtgtattaa tgtttataac tgttccagct agtattggaa ttatggcctt
    16321 ggcacaacca ttattcacag ttttctatgg ttacgatcca attgttttag gtcatgaccc
    16381 taaccatgat ggtagtcgct tattattcta ttatgcgcct gtagcaatac taatttcact
    16441 attaagtgta acggcatcaa tgttacaagg tatagataaa cagaaattaa cagtttatgt
    16501 tattttagct tctgtagtta tcaagttagc gttaaactat ccattaatta tgttattcca
    16561 tacacctggt gcaattttaa gtactagtat cgcattatta tttgcaattg gatgtaattt
    16621 ctatattctt aaaaaatatg cgaagtttaa attcagctat agttggattc attttgcaaa
    16681 aatattcttg tattcattta ttatgatgct aggtgtagaa ttagtatttt tccttgcaaa
    16741 tctattctta gaacctacta aacttggtta cttaatcatt attattttag gtgttacagt
    16801 aggtattcta atttacggta caatcacaat taaaacgcgt cttgcggacg aattcttagg
    16861 tgaaattcct gaaaaattaa gacgtagagt taggttttta cgatgagaat agataaattt
    16921 ttagcaaata tgggcgtcgg tacacgtaat gaggtcaaac agttacttaa aaaaggcctt
    16981 gtaaatgtca acgaacaagt aattaaatca ccaaaaacac atatagaacc agaaaacgat
    17041 aagataacag ttcgtggaga attaatagaa tacattgaaa atgtctatat tatgttaaat
    17101 aagccaaaag gttatatatc agcaactgaa gatcatcatt caaaaaccgt tattgattta
    17161 atacctgaat accaacatct aaatattttt ccggttggtc gtcttgataa agatacagaa
    17221 gggcttttat tgataacgaa tgatggtgat tttaatcatg aattaatgag tccaaacaaa
    17281 catgtttcta aaaaatatga agttatttca gcaaatccta tcactgaaga cgacattcaa
    17341 gcttttaaag agggtgtaac actgactgat ggcaaggtta agcctgcaat attaacttat
    17401 attgataatc aaacgtcaca cgtaacaatt tatgaaggaa aatatcatca agttaaacga
    17461 atgtttcata gcattcaaaa tgaggtatta catttaagac gtatcaaaat tgctgattta
    17521 gaattggaca gcaatttaga ttcaggagaa tatcgtttat taactgaaaa tgattttgac
    17581 aaattaaatt ataaataaaa gggagacgat tgatatggca aaaggtaatt tatttaaagc
    17641 gattttaggt ataggtggcg ctgtagcagc tgtacttgtt acacgtaaag atagtcgtga
    17701 caagctgaaa gcagaatata ataaatataa acaagatcct caaagctata aagataatgc
    17761 taaggataaa gcgacgcaat taggaacaat tgctaatgaa acaattaaag aagtaaaaac
    17821 aaatccgaaa gaatatgcta atagattaaa aaataatcca aaagcatttt tcaaagaaga
    17881 aaaatcaaaa tttaccgaat atgacaataa gactgacgaa agtattgaaa aaggtaaatt
    17941 tgatgatgaa ggtggcgcag caccaaataa taatttacgt atcgtcactg aagaagattt
    18001 aaaaaagaat aaaaatgcat tatctgataa agaataagat gtgagtagga cagaaatgat
    18061 aagggagtgg gacagaaat
//
LOCUS       DAMQWL010000047        17906 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.047, whole genome shotgun sequence.
ACCESSION   DAMQWL010000047 DAMQWL010000000
VERSION     DAMQWL010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 17906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17906
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.047"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..1374)
                     /locus_tag="PF788_001428"
     CDS             complement(<1..1374)
                     /locus_tag="PF788_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303692.1"
                     /translation="MSKKLKIIIPIIIVLLLIGGIAWGVYAFFANTPKNTYLKSEQQT
                     AKMYKDYFNDRFENEVKFQEKMKDNSFLSSLELSADASDEIVKGLGIPKSVVNASKIK
                     MSYGHDPKKEKSMINLEPTIADSALGKFQLAADKDKHYFESPLFKGKYSVNNSDLLST
                     YSKLTGEDEETAKENGITNQQLNLNTLFNNAQAQQSDYSKIAEKYSELIVDKLDDDNF
                     DKGKKEEIKVNGEKYKVRPVTLTLSRADTKKITLAVLEEAKKDKDLKKLMEEQGATKD
                     FEKDIKKAIDDVKETKKDEFAKIQSKIYTEKHTIVKREITITDKENNKTKIKGTNTLE
                     DDKLKLDYALDFDQDKYTYAEAKYTIKGVSSKEKDNKYNDKYEFGKKTEYDESKIKLD
                     NQEKVDGTKRQDKGKITVALDKYSDENEFTFENNIDSDVKNNTQKSTLNIGIKYAEEP
                     INFILKSS"
     gene            1645..2298
                     /locus_tag="PF788_001429"
     CDS             1645..2298
                     /locus_tag="PF788_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5079 family protein"
                     /protein_id="HDG6303693.1"
                     /translation="MELKVDDFVKNIKRPYLTVLGVFVVAVSLFFDAIMFFYAKLYDK
                     LPMYLLVFMAFTAVILIMMYIQEKNENYKVEKRYVVRYLTLNVIVGYTLPLLFVSIYV
                     FGVVGFGFDVFNYCLGIILMLFISWLGLFLFYKNEFDSENPNPAVNAIAIIIKLFAFG
                     GIFYISLIVPVTQQEEIFIGLSIFINIIVDALLVRSYFNYALYKSIKKDIENEGKTM"
     gene            2332..2919
                     /locus_tag="PF788_001430"
     CDS             2332..2919
                     /locus_tag="PF788_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5080 family protein"
                     /protein_id="HDG6303694.1"
                     /translation="MIIFILITIFAIYYIAMIASLFKSEGFSIIGLILDVVIMGTLIF
                     YYFIGARFVDHDLSNFLMFMDTGSYIFMYFAIKCLWVKPKVVNYLIAKELGESKEVIE
                     EQELDLQTSKIRGIYFFIISVVMLIITKLRMQPELQADAISMNPVFIFVGVIIILIWL
                     VLDIYRKKKYGIFLFKTIVPLVVTTWIIIATIILS"
     gene            complement(3062..3955)
                     /locus_tag="PF788_001431"
     CDS             complement(3062..3955)
                     /locus_tag="PF788_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDG6303695.1"
                     /translation="MKKTILLTMTTLTLFSMSPNSAQAYTNDSKTLEEAKKAHPNAQF
                     KVNKDTGAYTYTYDKNNTPNNNHQNQSRTNDNHQHANQRDLNNNQYHSSLSGQYTHIN
                     DAIDSHTPPQTSPSNPLTPAIPNVEDNDDELNNAFSKDNKGLITGIDLDELYDELQIA
                     EFNDKAKTADGKPLALGNGKIIDQPLITSKNNLYTAGQCTWYVFDKRAKDGHTISTFW
                     GDAKNWAGQASSNGFKVDRHPTRGSILQTVNGPFGHVAYVEKVNIDGSILISEMNWIG
                     EYIVSSRTISASEVSSYNYIH"
     gene            4203..4496
                     /gene="esxA"
                     /locus_tag="PF788_001432"
     CDS             4203..4496
                     /gene="esxA"
                     /locus_tag="PF788_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WXG100 family type VII secretion effector EsxA"
                     /protein_id="HDG6303696.1"
                     /translation="MAMIKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWE
                     GQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQLSNNFGLQ"
     gene            4580..7609
                     /gene="esaA"
                     /locus_tag="PF788_001433"
     CDS             4580..7609
                     /gene="esaA"
                     /locus_tag="PF788_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EsaA"
                     /protein_id="HDG6303697.1"
                     /translation="MKKKNWIYALIVTLIIIIAIVSMIFFVQTKYGDQSEKGSQSVSN
                     KNNKIHIAIVNEDQPTTYNGKKVELGQAFIKRLANEKNYKFETVTRNVAESGLKNGGY
                     QVMIVIPENFSKLAMQLDAKTPSKISLQYKTAVGQKEEVAKNTEKVVSNVLNDFNKNL
                     VEIYLTSIIDNLHNAQKNVGAIMTREHGVNSKFSNYLLNPINDFPELFTDTLVNSISA
                     NKDITKWFQTYNKSLLSANSDTFRVNTDYNVSTLIEKQNSLFDEHNTAMDKMLQDYKS
                     QKDSVELDNYINALKQMDSQIDQQSSMQDTGKEEYKQTVKENLDKLREIIQSQESPFS
                     KGMIEDYRKQLTESLQDELANNKDLQDALNSIKMNNAQFAENLEKQLHDDIVKEPDTD
                     TTFIYNMSKQDFIAAGLNEDEANKYEAIVKEAKRYKNEYNLKKPLAEHINLTDYDNQV
                     AQDTSSLINDGVKVQRTETIKSNDINQLTVATDPHFNFEGDIKINGKKYDIKDQSVQL
                     DTSNKEYKVEVNGVAKLKKDAEKDFLKDKTMHLQLLFGQANRQDEPNDKKATSVVDVT
                     LNHNLDGRLSKDALSQQLSALSRFDAHYKMYTDTKGREDKPFDNKRLIDMMVDQVIND
                     MESFKDDKVAVLHQIDSMEENSDKLIDDILNNKKNTTKNKEDISKLIDQLENVKKTFA
                     EEPQEPKIDKGKNDEFNTMSSNLDKEISRISEKSTQLLSDTQESKSIADSVSGQLNQV
                     DNNVNKLHATGRALGVRANDLNRQMAKNDKDNELFAKEFKKVLQNSKDGDRQNQALKA
                     FMSNPVQKKNLENVLANNGNTDVISPTLFVLLMYLLSMITAYIFYSYERAKGQMNFIK
                     DDYSSKNHLWNNVITSGVIGTTGLVEGLIVGLIAMNKFHVLAGYRAKFILMVILTMMV
                     FVLINTYLLRQVKSIGMFLMIAALGLYFVAMNNLKAAGQGVTNKISPLSYIDNMFFNY
                     LNAEHPIGLVLVILTVLVIIGFVLNMFIKHFKKERLI"
     gene            7609..8067
                     /gene="essA"
                     /locus_tag="PF788_001434"
     CDS             7609..8067
                     /gene="essA"
                     /locus_tag="PF788_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssA"
                     /protein_id="HDG6303698.1"
                     /translation="MLMNSVIALTFLTASSNNGGLNIDVQQEEEKRINNDLNQYDTTL
                     FNKDSKAVNDAIAKQKKERQQQIKNDMFQNQASHSTRLNETKKVLFSKSNLEKTSESD
                     KSPYIQNKQEKKIFPYILMSVGAFLTLGFVIFSIHKGRRTKNESARKSNI"
     gene            8039..8281
                     /gene="esaB"
                     /locus_tag="PF788_001435"
     CDS             8039..8281
                     /gene="esaB"
                     /locus_tag="PF788_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001071606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EsaB"
                     /protein_id="HDG6303699.1"
                     /translation="MNQHVKVTFDFTNYNYGTYDLAVPAYLPIKNLIALVLDSLDISI
                     FDVNTQIKVMTKGQLLVENDRLIDYQIADGDILKLL"
     gene            8294..9628
                     /gene="essB"
                     /locus_tag="PF788_001436"
     CDS             8294..9628
                     /gene="essB"
                     /locus_tag="PF788_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssB"
                     /protein_id="HDG6303700.1"
                     /translation="MVKNHNPKNEMQDMLTPLDAEEAAKTKLRLDMREIPKSSIKPEH
                     FHLMYLLEQHSPYFIDAELTELRDSFQIHYDINDNHTPFDNIKSFTKNEKLRYLLNIK
                     NLEEVNRTRYTFVLAPDELFFTRDGLPIAKTRGLQNVVDPLPVSEAEFLTRYKALVIC
                     AFNEKQSFDALVEGNLELHKGTPFETKVIEAATLDLLTAFLDEQYQKQEQDYSQNYAY
                     VRKVGHTVFKWVAIGMTTLSVLLIAFLAFLYFSVMKHNERIEKGYQAFVKDDYTQVLN
                     TYDDLDGKKLDKEALYIYAKSYIQTNKQGLEKDKKENLLNNVTPNSNKDYLLYWMELG
                     QGHLDEAINIATYLDDNDITKLALINKLNEIKNNGDLSNDKRSEETKKYNDKLQDILD
                     KEKQVKDEKAKSEEEKAKAKDEKLKQQEENEKKQKEQAQKDKEKRQEAERKK"
     gene            9650..14089
                     /gene="essC"
                     /locus_tag="PF788_001437"
     CDS             9650..14089
                     /gene="essC"
                     /locus_tag="PF788_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssC"
                     /protein_id="HDG6303701.1"
                     /translation="MHKLIIKYNKQLKMLNLRDGKTYTISEDERADITLKSLGEVIHL
                     EQNNQGTWQANHTSINKVLVRKGDLDDITLQLYTEADYASFAYPSIQDTMTIGPNAYD
                     DMVIQSLMNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQLTNKAYIGDHIYVE
                     GIWLEVQADGLNVLSQNTVASSLIRLTQEMPHAQADDYNTYHRSPRIIHREPTDDIKI
                     ERPPQPIQKNNTVIWRSIIPPLVMIALTVVIFLVRPIGIYILMMIGMSTVTIVFGITT
                     YFSEKKKYNKDVEKREKDYKAYLDNKSKEINKAIKAQRFSLNYHYPTVAEIKDIVETK
                     APRIYEKTSHHHDFLHYKLGIANVEKSFKLDYQEEEFNQRRDELFDDAKELYEFYTDV
                     EQAPLINDLNHGPIAYIGARHLILEELEKMLIQLSTFHSYHDLEFLFVTREDEVETLK
                     WARWLPHMTLRGQNIRGFVYNQRTRDQILTSIYSMIKERIQAVRERSRSNEQIIFTPQ
                     LVFVITDMSLIIDHVILEYVNQDLSEYGISLIFVEDVIESLPEHVDTIIDIKSRTEGE
                     LITKEKELVQLKFTPENIDNVDKEYIARRLANLIHVEHLKNAIPDSITFLEMYNVKEV
                     DQLDVVNRWRQNETYKTMAVPLGVRGKDDILSLNLHEKAHGPHGLVAGTTGSGKSEII
                     QSYILSLAINFHPHEVAFLLIDYKGGGMANLFKDLVHLVGTITNLDGDEAMRALTSIK
                     AELRKRQRLFGEHDVNHINQYHKLFKEGIATEPMPHLFIISDEFAELKSEQPDFMKEL
                     VSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFKLALKVQDRQDSNEILKTPDAAD
                     ITLPGRAYLQVGNNEIYELFQSAWSGATYDIEGDKLEVEDKTIYMINDYGQLQAINKD
                     LSGLEDEETKENQTELEAVIDHIESITTRLEIEEVKRPWLPPLPENVYQEDLVETDFR
                     KLWSDDAKEVELTLGLKDVPEEQYQGPMVLQLKKAGHIALIGSPGYGRTTFLHNIIFD
                     VARHHRPDQAHMYLFDFGTNGLMPVTDIPHVADYFTVDQEDKIAKAIRIFNDEIDRRK
                     KILSQYRVTSISEYRKLTGETIPHVFILIDNFDAVKDSPFQEVFENMMIKMTREGLAL
                     DMQVTLTASRANAMKTPMYINMKTRIAMFLYDKSEVSNVVGQQKFAVKDVVGRALLSS
                     DDNVSFHIGQPFKHDETKSYNDQINDEVSAMTEFYKGETPNDIPMMPDEIKYEDYRES
                     LNLPDIVANGALPIGLDYEGVTLQKIKLTEPAMISSENPREIAHIAEIMMKEIDILNE
                     KYAICIADSSGEFKAYRHQVANFAEEREDIKAIHQLMIEDLKQREMDGPFEKDSLYII
                     NDFKTFIDCTYIPEDDVKKLITKGPELGLNILFVGIHKELIDAYDKQIDVARKMINQF
                     SIGIRISDQQFFKFRFIQREPVIKENEAYMVANQAYQKIRWFK"
     gene            14119..14511
                     /gene="esaC"
                     /locus_tag="PF788_001438"
     CDS             14119..14511
                     /gene="esaC"
                     /locus_tag="PF788_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion substrate EsaC"
                     /protein_id="HDG6303702.1"
                     /translation="MNFNDIETMVKSKFKDIKKHAEEIAHEIEVRSGYLRKAEQYKRL
                     EFNLSFALDDIESTAKDVQTAKSSANKDSVTVKGKAPNTLYIEKRNLMKQKLEMLGED
                     IDKNKESLQKAKEIAGEKASEYFNKAMN"
     gene            14527..14841
                     /gene="esxB"
                     /locus_tag="PF788_001439"
     CDS             14527..14841
                     /gene="esxB"
                     /locus_tag="PF788_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WXG100 family type VII secretion effector EsxB"
                     /protein_id="HDG6303703.1"
                     /translation="MGGYKGIKADGGKVDQAKQLAAKTAKDIEACQKQTQQLAEYIEG
                     SDWEGQFANKVKDVLLIMAKFQEELVQPMADHQKAIDNLSQNLAKYDTLSIKQGLDRV
                     NP"
     gene            14841..15515
                     /locus_tag="PF788_001440"
     CDS             14841..15515
                     /locus_tag="PF788_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5081 family protein"
                     /protein_id="HDG6303704.1"
                     /translation="MKDVKRIDYFSYEELTILGGSKLPLVNFELFDPSNFEEAKAALI
                     EKELVTENDKLTDAGFKVATLVREYISAIVNIRINDMYFAPFSYEKDEYILLSRFKNN
                     GFQIRIINKDIAWWSIVQSYPLLMRQEKSNDWDFKQIDDETLENLNNESIDTIGRVLE
                     IEIYNHQGDPQQSLYNIYEQNDLLFIRYPLKDKVLNVHIGVINTFIRELFGFDTDENH
                     INKAEE"
     gene            15515..15832
                     /locus_tag="PF788_001441"
     CDS             15515..15832
                     /locus_tag="PF788_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303705.1"
                     /translation="MTLSGKISVKAETIAHVVKELESISQKYDEIAQNFGKIAQLNYY
                     SSEKAAHSMENGYSSAATVISGLKGPLSTLGGGVMNSAQKFFEADEHWGTEFAKLYYN
                     IEG"
     gene            15842..17686
                     /locus_tag="PF788_001442"
     CDS             15842..17686
                     /locus_tag="PF788_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease YeeF family protein"
                     /protein_id="HDG6303706.1"
                     /translation="MTKDIEYLTADYDNEKSSIQSVIDAIEGQDFLDVDTTMDDAVSD
                     VSSLDEDGAISLTSSVVGPQGSKLMGYYQNELYDYASQLDSKMKEIIDTPFIEDIDKA
                     FKGITNVKLENILIKNGGGHGRDTYGASGKIAKGDAKKSDSDVYSIDEILKSDQEFVK
                     VIDQHYKEMKKEDKKLSKSDFEKMMTQGASCDYMTVAEAEELEEQKKKEEAIEIAALA
                     GMVVLSCINPVAGAVAIGAYSAYSAANAATGKNIVTGRKLSKEERIMEGLSLIPLPGM
                     GFLKGAGKSLMKLGFKGGEKFAVKTGLQKTMQQAVSRISPKMGMMKNSVLNQSRNFAQ
                     NTHVGQMLSNMRGQATHTVQQSRNWIGQQAQNVKRIVNNGLDKEIAHPFKQQLAPAGM
                     GGIKFAETTTLRNMGQNIKRAVTPQNHVTHGPKDSMVRSEGKHSISSHEMNSSKYVES
                     PNYTKVEFGEHYARLRPKKLKANIEYTTPTGHIYRTDHKGRIKEVYVDNLSLKDGDRN
                     SHAQRTVGGEDRLPDDDGGHLIARMFGGSKDIDNLVAQSKFINRPFKEKGHWYNLEKE
                     WQEFLNSGKEVKNIKMEVKYSGNSQRPTIFKVEYEINGERNIRRILNK"
     gene            17697..>17906
                     /locus_tag="PF788_001443"
     CDS             17697..>17906
                     /locus_tag="PF788_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01741 family protein"
                     /protein_id="HDG6303707.1"
                     /translation="MTFEEKLSKIYNEIANEISSMIPVEWEKVYTMAYIDDGGGEVFF
                     NYTKPGSDDLNYYTNIPKEYNISVQV"
BASE COUNT         6597 a         2460 c         3289 g         5560 t
ORIGIN      
        1 gctagatttt aaaatgaaat taattggttc ttcagcatat ttgatgccga tatttaacgt
       61 agatttctga gtgttatttt ttacgtcaga atctatatta ttttcaaaag tgaattcatt
      121 ttcgtcgcta tatttatcta atgcgacagt gattttacct ttatcttgac gttttgtgcc
      181 atctactttt tcttggttat ctaatttgat ttttgattca tcatattctg tctttttacc
      241 aaattcgtat ttatcattat atttattatc tttttcttta gaagatacgc ctttaattgt
      301 atatttcgct tcagcatacg tgtatttatc ttgatcgaaa tcaagtgcgt aatctagttt
      361 taacttatcg tcttctaaag tattagtacc tttgatttta gttttattat tttctttgtc
      421 tgtaatagta atttctcgtt ttacaatcgt atgtttttcg gtataaattt tagattgaat
      481 tttagcaaat tcatcctttt tagtttcttt gacatcgtca attgcttttt tgatgtcttt
      541 ttcaaagtct tttgtagcac cttgttcttc cattaatttt ttaaggtctt tatccttttt
      601 agcttcttct aatacagcta atgtaatttt tttagtgtca gctctgctaa gtgttaacgt
      661 gacaggtcta actttgtact tttcaccatt aaccttaatt tcttcttttt tacctttatc
      721 aaaattatcg tcatctaatt tgtcgacaat aagttcggaa tatttttcgg caattttgct
      781 gtagtcactt tgttgtgctt gagcattatt aaaaagagta tttaaattta gttgttggtt
      841 tgtaatacca ttttcttttg ctgtttcttc atcttcacct gtaagttttg aataagttga
      901 taataaatca gaattattaa cactatattt ccctttaaat aatggtgatt cgaaataatg
      961 cttatcttta tctgcagcta actggaattt ccctaatgca gagtctgcga ttgttggttc
     1021 aagattaatc attgatttct cttttttagg atcatgtcca tatgacattt taattttcga
     1081 tgcattaaca acagatttag gaatgccaag ccctttaaca atttcatctg atgcatctgc
     1141 gcttaattct aatgaagata aaaacgaatt atctttcatc ttttcttgga acttcacttc
     1201 attttcaaaa cggtcattaa aataatcttt atacattttt gctgtttgtt gttcactttt
     1261 taggtatgta tttttcggtg tattagcaaa aaatgcataa actccccatg cgattccacc
     1321 tattaatagt aagacaataa taataggaat tataattttt aactttttag acattttgct
     1381 tcctcccaat tatttatgag ttaatcatat cagaacaata cattttatta aatggtttat
     1441 tttaaatttt gtttaaatta atagaatttt agttataata atgtttaata agttattgga
     1501 aatctaataa actacaaaaa atagtttgat tacataatga ttcttgaaaa atgttggtta
     1561 acttaataat atgcattttt ttggcgaaga agatttattt aacttataaa aatattgaag
     1621 taagattggg gagattatga atttatggaa ttgaaagtcg atgattttgt aaagaatata
     1681 aaaagaccat acttgactgt attgggagta tttgtagttg cagtttcatt attttttgac
     1741 gcgattatgt ttttctacgc taaactatat gataaattgc ctatgtattt actggtgttt
     1801 atggccttta cagctgtaat tttgattatg atgtacatac aagagaaaaa tgaaaattac
     1861 aaagttgaaa aaagatatgt ggttagatat ctcacactta acgttattgt gggatatact
     1921 ttgccattgc tttttgtatc tatttacgtt tttggtgtag tcggttttgg atttgatgtt
     1981 ttcaattatt gtctaggtat tatcttgatg ttatttattt cttggttagg tttattttta
     2041 ttttataaaa acgaatttga tagtgaaaat cctaatcctg cagttaatgc catagcaatt
     2101 attataaaat tatttgcttt tggaggaata ttttatataa gtctaatagt tcctgtaaca
     2161 cagcaagaag agatttttat agggttaagt atattcatca atataattgt tgatgctctt
     2221 cttgttaggt catattttaa ttacgcgtta tataagagta ttaagaaaga tatcgaaaat
     2281 gaaggtaaga caatgtaaag gaaagacata aaaaataata ggagtctaac catgataatt
     2341 tttattttaa taacaatatt tgctatttat tatatagcta tgattgctag tttgtttaaa
     2401 agtgaaggtt tttcaataat aggtttaata ttagatgttg ttataatggg gacattgatt
     2461 ttttactatt ttataggcgc tcgctttgtt gatcatgatt taagcaactt tttaatgttt
     2521 atggatactg gatcatatat ttttatgtac tttgcaatta agtgtttatg ggtgaaacct
     2581 aaggtagtaa attatttgat tgcaaaagaa ttgggtgaat ctaaagaggt cattgaagag
     2641 caggaattag atttacagac atcaaagata agaggtatct actttttcat tatttcagta
     2701 gtgatgttaa ttatcactaa attaagaatg caacctgagt tacaggcaga tgctatatcg
     2761 atgaatcctg tatttatttt tgttggtgtt ataatcattt taatttggct agtactggat
     2821 atatatcgca agaaaaaata cggtatattc ttattcaaga cgatagtgcc actagttgtt
     2881 acgacttgga ttattatagc tacaattata ctttcgtaaa cgattttgat taatggggaa
     2941 tgtagagaac atttctttgt aattttataa tcgaataaca tacaaaataa agcgaccaat
     3001 tttgcagtgt tacgaattgt aaactgcgaa ctggtcgctt tttattgatg tcatgattaa
     3061 tttaatggat gtaattatat gatgaaactt ctgaagcaga gatggttctt gatgaaacga
     3121 tatattcacc aatccagttc atttctgaaa ttagaatact tccatcaata ttaacttttt
     3181 caacgtaggc tacatgacca aatggaccat ttactgtttg taaaattgat cctcgtgttg
     3241 ggtgtctatc tactttgaag ccattgcttg aagcttggcc tgcccagttt ttagcatctc
     3301 cccaaaatgt actaatcgtg tgtccatctt tggcacgttt atcaaagaca taccatgtac
     3361 attgtccagc agtatataag ttgttcttac ttgtgataag aggctgatca atgattttac
     3421 cgttacctaa tgctaaaggt ttaccgtcag cggtctttgc tttgtcatta aattcggcga
     3481 tttgtaattc gtcatacaat tcgtctaaat cgatgcctgt aataagccct ttgttatctt
     3541 ttgaaaaagc gttatttaat tcatcgtcat tgtcttcgac attcggtatt gctggtgtca
     3601 aaggattgct tggtgacgtt tgaggcggtg tgtgtgaatc aattgcgtca ttaatgtgcg
     3661 tatactgacc acttaatgaa gaatggtact gattgttgtt aagatcacgt tgatttgcgt
     3721 gttgatgatt gtcgtttgta cgtgactggt tttgatgatt gttgtttggc gtgttgtttt
     3781 tgtcatatgt ataagtatac gcgccggtgt ctttattcac tttgaactgt gcgtttgggt
     3841 gtgctttctt tgcttcttct aatgttttgc tatcattcgt atatgcttga gccgagttag
     3901 gcgacatact aaataaagta agagttgtca tcgtcagtaa aattgttttc ttcataataa
     3961 ccatttaatc ctttatgtat ttaatttaat tttagtatac acatttatat tacaaaaatg
     4021 aatggttaat taaaaatata tgggtatatt caatatattt atttaaaaaa agctaaaaat
     4081 acttaaaaaa ctatatacat atactaataa tttatatatt atttgagtaa ggagcacttt
     4141 ttcaaaaaat agtgtcccta aaaagttttg ataaacttaa aatattcagg aggtttctag
     4201 ttatggcaat gattaagatg agtccagagg aaatcagagc aaaatcgcaa tcttacgggc
     4261 aaggttcaga ccaaatccgt caaattttat ctgatttaac acgtgcacaa ggtgaaattg
     4321 cagcgaactg ggaaggtcaa gctttcagcc gtttcgaaga gcaattccaa caacttagtc
     4381 ctaaagtaga aaaatttgca caattattag aagaaattaa acaacaattg aatagcactg
     4441 ctgatgccgt tcaagaacaa gaccaacaac tttctaataa tttcggtttg caataagcat
     4501 tctgaaattg gcaaagtcac attttctaat gtggctttgc ttatcatttt tttaagaaaa
     4561 caactgaaag gaaataagca tgaaaaagaa aaattggatt tatgcattaa ttgtcacttt
     4621 aattattata attgccatag ttagtatgat attttttgtt caaacaaaat atggagatca
     4681 atcagaaaaa ggatcccaaa gtgtaagtaa taaaaataat aaaatacata tcgcaattgt
     4741 taacgaggat caaccaacga catataacgg taaaaaagtt gagctgggtc aagcatttat
     4801 taaaaggtta gcaaatgaga aaaactataa atttgaaaca gtaacaagaa acgttgctga
     4861 gtctggtttg aaaaatggtg gataccaagt catgattgtt atcccagaaa acttttcaaa
     4921 attggcaatg caattagacg ctaaaacacc atcgaaaata tcgctacagt ataaaacagc
     4981 tgtaggacaa aaagaagaag tagctaaaaa cacagaaaaa gttgtaagta atgtacttaa
     5041 cgactttaac aaaaacttag tcgaaattta tttaacaagc atcattgata atttacataa
     5101 tgcacaaaaa aatgttggcg ctattatgac gcgtgaacat ggtgtgaata gtaaattctc
     5161 gaattactta ttaaatccaa ttaacgactt cccggaatta tttacagata cgcttgtaaa
     5221 ttcaatttct gcaaacaaag acattacaaa atggttccaa acatacaata aatcattatt
     5281 gagtgcgaat tcagatacgt tcagagtgaa cacagattat aatgtttcga ctttaattga
     5341 aaaacaaaat tcattatttg acgagcacaa tacagcgatg gataaaatgt tacaagatta
     5401 taaatcgcaa aaagatagcg tggaacttga taactatatc aatgcattaa aacagatgga
     5461 cagccaaatt gatcaacaat caagtatgca agatacaggt aaagaagaat ataaacaaac
     5521 tgttaaagaa aacttagata aattaagaga aatcattcaa tcacaagagt caccattttc
     5581 aaaaggtatg attgaagact atcgtaagca attaacagaa tcactgcaag atgagcttgc
     5641 aaataacaaa gacttacaag atgcgctaaa tagcattaaa atgaacaatg ctcaattcgc
     5701 tgaaaactta gagaaacaac ttcatgatga tattgtcaaa gaacctgata cagatacaac
     5761 atttatctat aacatgtcta aacaagactt tatagctgca ggtttaaatg aggatgaagc
     5821 taataaatac gaagcaattg tcaaagaagc aaaacgttat aaaaatgaat ataatttgaa
     5881 aaaaccgtta gcagaacaca ttaatttaac agattacgat aaccaagttg cgcaagacac
     5941 aagtagtttg attaatgatg gtgtcaaagt gcaacgtact gaaacgatta aaagtaatga
     6001 tattaatcaa ttaactgttg caacagatcc tcattttaat tttgaaggcg acattaaaat
     6061 taatggtaaa aaatatgaca ttaaggatca aagtgttcaa ctcgatacat ctaacaagga
     6121 atataaagtt gaagtcaatg gcgttgctaa attgaaaaag gatgctgaga aagatttctt
     6181 aaaagataaa acaatgcatt tacaattgtt atttggacaa gcaaatcgtc aagatgaacc
     6241 aaatgataag aaagcaacga gtgttgtgga tgtaacattg aatcataacc ttgatggtcg
     6301 cttatcgaaa gatgcattaa gccagcaatt gagtgcatta tctaggtttg atgcgcatta
     6361 taaaatgtac acagatacaa aaggcagaga agataaacca ttcgacaaca aacgtttaat
     6421 tgatatgatg gttgaccaag ttatcaatga catggaaagt ttcaaagacg ataaagtagc
     6481 tgtgttacat caaattgatt caatggaaga aaactcagac aaactgattg atgacatttt
     6541 aaataacaaa aagaatacaa caaaaaataa agaagatatt tccaagctga ttgatcagtt
     6601 agaaaacgtt aaaaagactt ttgctgaaga gccacaagaa ccaaaaattg ataaaggcaa
     6661 aaatgatgaa tttaatacga tgtcttcaaa tttagataaa gaaattagta gaatttctga
     6721 aaagagtacg caattgctat cagatacaca agaatcaaaa tcaattgcag attctgttag
     6781 tggccaatta aatcaagtcg acaataatgt gaataagcta catgcgacag gtcgagcatt
     6841 aggcgtaaga gctaacgatt tgaatcgtca aatggctaaa aacgataaag ataatgagtt
     6901 gttcgctaaa gaatttaaaa aagtattaca aaattctaaa gatggcgaca gacaaaacca
     6961 agcattaaaa gcatttatga gtaatccggt tcaaaagaaa aacttagaaa atgttttagc
     7021 taataatggt aatacagacg tgatttcacc gacattattc gtattattga tgtatttact
     7081 atcaatgatt acagcatata ttttctatag ttatgaacgt gccaaaggac aaatgaattt
     7141 cattaaagat gattatagta gtaaaaacca tctttggaat aatgtcatta cgtcaggtgt
     7201 tattggtaca actggtttgg tagaagggtt aattgtcggt ttaattgcaa tgaataagtt
     7261 ccatgtatta gctggctata gagcgaaatt catcttaatg gtgattttaa ctatgatggt
     7321 cttcgtactt attaatacgt atttactaag acaggtaaaa tctatcggta tgttcttaat
     7381 gattgctgca ttgggtctat actttgtagc tatgaataat ttgaaagcag ctggacaagg
     7441 tgtgactaat aaaatttcac cattgtctta tatcgataac atgttcttca attatttaaa
     7501 tgcagagcat cctataggct tggtgctagt aatattaaca gtacttgtga ttattggctt
     7561 tgtactgaac atgtttataa aacactttaa gaaagagaga ttaatctaat gttgatgaat
     7621 agcgtgattg ctttaacttt tttaacagca tctagcaata atggcggact taatattgat
     7681 gtgcaacaag aagaggaaaa gcgaatcaat aatgatttaa atcaatatga tacaacgcta
     7741 tttaataaag acagcaaagc ggttaatgat gcgattgcta agcagaaaaa agaacgacaa
     7801 caacaaataa aaaatgatat gtttcaaaat caagcgagtc actcgactcg cttgaatgaa
     7861 actaaaaaag tgttattttc caaatctaac ttagaaaaga cttcggagag tgataaaagc
     7921 ccctatattc aaaacaagca ggagaaaaaa atattcccgt acattttgat gtctgtaggg
     7981 gcttttttga ctttaggatt tgtcattttt tcaattcata aagggagacg aacgaaaaat
     8041 gaatcagcac gtaaaagtaa catttgattt tactaattat aattacggca catatgactt
     8101 agcagtacca gcatatttac cgataaaaaa cttaatagct ttagtattgg atagtttgga
     8161 catttcaata tttgatgtca atacacaaat taaagtgatg acgaaaggtc aattacttgt
     8221 tgaaaatgat cgactcattg attatcaaat cgctgatgga gatattttga agttactata
     8281 ggaggaaaaa tagatggtta aaaatcataa ccctaaaaat gaaatgcaag atatgttaac
     8341 gcctttagat gctgaagaag cagctaaaac aaaattacgc ttagatatga gagagattcc
     8401 taagtcttca attaaaccag aacattttca tttaatgtac ttattagaac aacattctcc
     8461 atattttata gatgctgaat taactgaact acgtgacagt ttccaaatac attatgacat
     8521 taatgacaat catacacctt ttgataatat taaatcattt actaaaaatg aaaaattacg
     8581 ttacttactc aatatcaaaa atttagaaga agtaaatcgt acacgctaca catttgtgtt
     8641 ggcaccagat gaattatttt tcacaagaga tggattaccc attgctaaaa caagagggtt
     8701 acaaaatgtt gttgatccat tacctgtgtc agaagctgaa tttttaacaa gatataaagc
     8761 gctggttatc tgtgcattca atgagaaaca atcatttgat gctttagttg aaggaaactt
     8821 agaactacat aaaggaacgc catttgaaac taaagttatt gaagcggcaa cgttagattt
     8881 actaacggca tttttagatg aacagtatca gaaacaagaa caagattata gtcaaaatta
     8941 tgcatatgta cgcaaagtag gacataccgt tttcaaatgg gttgctatcg gtatgacaac
     9001 gttaagtgtt ttattaattg cattcttagc ctttttatat ttttcagtaa tgaagcataa
     9061 tgagcgcatt gaaaaaggat accaagcatt tgtaaaggat gattatacgc aagtactaaa
     9121 tacgtatgat gatttagatg gtaaaaaatt agataaagag gcactttaca tttatgccaa
     9181 aagttatatc caaacaaata aacaaggttt agaaaaagat aagaaagaaa atttacttaa
     9241 taatgtgaca ccaaattcaa acaaagacta cttattatat tggatggaat taggacaagg
     9301 acatcttgat gaagcgatta atattgccac ttatttagat gataacgata ttacaaagtt
     9361 agcgttgatt aataaattaa atgagattaa aaataacgga gatttatcga atgataaacg
     9421 ttctgaagaa acgaaaaagt ataacgataa attgcaagat attttagaca aagaaaaaca
     9481 agttaaagat gaaaaagcga aatctgaaga agagaaagca aaagcgaaag atgagaaatt
     9541 aaagcaacaa gaagagaacg aaaagaaaca aaaagaacaa gcacaaaaag ataaagaaaa
     9601 acgccaagaa gctgaaagaa aaaaatagta taggactgag gcaaagacaa tgcataaatt
     9661 gattataaaa tataacaaac aattgaagat gctcaatttg cgagatggta agacatatac
     9721 tattagcgaa gacgagcgtg cagatattac gttgaaatcg ttaggcgaag tcattcattt
     9781 agaacaaaat aatcaaggta cttggcaagc gaatcatact tctattaata aggtgcttgt
     9841 tagaaaaggt gaccttgatg acattacatt acagctttat acagaagctg attatgcatc
     9901 atttgcgtat ccttcaattc aagatacgat gacaattgga ccaaatgcgt atgatgatat
     9961 ggttattcaa agcttgatga atgccatcat tattaaagat tttcaatcaa tacaagaatc
    10021 acaatacgta cgcattgtgc acgataaaaa tacagatgtg tatattaact atgaactaca
    10081 agagcaacta acgaacaaag cttacattgg tgatcatatt tatgttgaag ggatatggct
    10141 cgaagtacaa gctgatggtt taaatgtatt gagtcagaat acagtggcat cgtcattaat
    10201 tcgcttaaca caagagatgc cacatgcaca ggcagatgat tacaatacgt accatcgttc
    10261 gccaaggatt attcaccgtg aaccgacgga tgatattaag attgaaagac cgccacagcc
    10321 aatacagaag aacaatacag tgatatggcg ttccattata ccgccattag taatgattgc
    10381 tttaactgtt gtcatctttt tagtgagacc aattggtatt tatattttaa tgatgattgg
    10441 tatgagtaca gtaacgatag tatttggtat tacaacgtat ttctctgaaa agaaaaagta
    10501 taacaaagat gttgaaaaac gagagaaaga ttacaaagct tatttggata ataaatctaa
    10561 agaaattaac aaagcgatta aagcacaacg ttttagtttg aattaccatt atccaacggt
    10621 tgctgaaatt aaagatatcg ttgaaacgaa agcaccaaga atatatgaaa aaacatcgca
    10681 tcatcacgat ttcttacatt ataagttagg tattgcgaat gtagaaaagt cattcaaatt
    10741 agattaccaa gaagaagaat ttaaccaacg tcgtgatgaa ctattcgacg atgctaaaga
    10801 attgtatgaa ttttacacag atgtagaaca agcaccatta atcaatgatt taaatcatgg
    10861 gccaattgca tatattggtg cacgacatct cattttagaa gaattggaga aaatgctaat
    10921 tcaattgtca acattccata gttatcatga tttagagttt ctatttgtga cacgtgaaga
    10981 tgaagttgaa acattgaaat gggcacgttg gttgccacat atgacattga gagggcaaaa
    11041 cattagagga tttgtttaca atcaacgaac gcgtgaccaa attttaacgt caatttatag
    11101 catgattaaa gaacgtatcc aagctgtgcg tgaacgcagc agaagtaatg agcaaattat
    11161 tttcacaccg caattagtgt ttgtcattac agatatgtca ttaattattg atcatgtcat
    11221 tttagaatat gtaaaccaag atttatcaga atatggtatt tcattaatct ttgttgaaga
    11281 tgtgattgaa agtttgccag agcatgtaga taccattatt gatatcaagt ctcgtactga
    11341 aggcgaactg attacgaaag aaaaagaatt agttcaattg aaatttacac ctgaaaatat
    11401 tgataacgtc gataaagaat atatcgcgcg acgtttggcg aatttgatac acgtcgaaca
    11461 tttgaaaaat gcaattcctg atagtattac atttttagag atgtataacg tgaaagaagt
    11521 agatcagctt gatgtggtta atcgatggag acaaaacgaa acatacaaaa cgatggcagt
    11581 acctttaggt gtaagaggta aagatgatat tttatcattg aacttacatg aaaaagcaca
    11641 cgggccacat ggtttagttg ctggtaccac tggttcaggg aaatctgaga ttatccaatc
    11701 atacatttta tctttagcta ttaattttca ccctcatgaa gttgcattcc tattgattga
    11761 ctataaaggt gggggtatgg cgaacttatt taaagattta gtccatttag ttggtacgat
    11821 tacaaactta gatggcgatg aagcgatgcg tgccttaaca tcaatcaaag ccgaattgag
    11881 aaaacgtcaa cgtttattcg gagagcatga tgttaaccat attaatcaat accataagtt
    11941 atttaaagaa ggtattgcga cagaaccaat gccacattta ttcattattt ccgatgagtt
    12001 tgccgaatta aaatcagaac aacctgattt tatgaaagaa cttgtatcaa cggcacgtat
    12061 tggacgttcg ttaggtattc atttaatact tgcgacacaa aaaccatcgg gtgttgttga
    12121 tgaccaaatt tggtctaact ctaaatttaa gttggcatta aaagtacaag atagacaaga
    12181 cagtaatgaa attttaaaaa caccagatgc agcagacatt acattaccag gtcgtgcgta
    12241 tttacaagtt ggtaataatg aaatttatga attattccaa tctgcatgga gtggtgcaac
    12301 atatgacatc gaaggcgata aattagaagt tgaagataag acgatttaca tgattaatga
    12361 ctatggtcaa cttcaagcaa tcaacaaaga cttgagtgga cttgaagatg aagaaacgaa
    12421 agaaaatcaa actgagttag aagcggtcat agatcatatc gaatctatta caacacgatt
    12481 agaaatcgaa gaagttaagc gtccatggct accaccattg ccagaaaatg tatatcaaga
    12541 agatttagta gaaacagatt tcagaaaatt atggtcagat gatgcaaaag aagtggaatt
    12601 aacattagga cttaaagacg taccagaaga acaatatcaa ggaccgatgg tattgcaatt
    12661 gaaaaaagct gggcacatcg cgttaatcgg aagtccagga tatggtagaa caacgttctt
    12721 acacaacatt attttcgatg ttgcaagaca ccatcgtcct gatcaagcac acatgtactt
    12781 gttcgatttc ggtaccaatg gtttgatgcc agttacagac ataccacatg tcgctgatta
    12841 ctttacagta gatcaagaag acaagattgc taaggcgata cgtatattta atgatgaaat
    12901 tgatcgtcgt aagaagattt taagtcagta tcgtgtcact agtatttctg aatatcgaaa
    12961 attaactggt gaaacaattc cgcatgtctt tattcttatt gataactttg acgcagtaaa
    13021 agattcacct ttccaagaag tttttgaaaa tatgatgatt aaaatgacgc gtgaagggct
    13081 agcattagac atgcaagtaa ccttaactgc ttcaagagct aacgctatga aaacaccaat
    13141 gtacattaat atgaaaacgc gtatcgcaat gtttttatat gataaatcag aggtgtcgaa
    13201 cgtagtagga cagcaaaaat ttgcggttaa agatgttgtg ggtcgagcat tgttaagtag
    13261 tgatgacaac gtatcattcc atattggcca accatttaaa catgatgaga ccaaatcata
    13321 taatgatcaa attaatgatg aagtatcggc gatgacagaa ttttataaag gtgaaacacc
    13381 aaatgatatt cctatgatgc cagatgaaat taaatatgaa gattacagag aatcattaaa
    13441 cttaccagat atagttgcaa atggtgcttt accaattgga ttagattatg aaggtgttac
    13501 actacaaaaa attaaattaa ctgaaccagc aatgatttca tcagaaaatc cgagagaaat
    13561 tgcgcatatt gctgaaatta tgatgaaaga aattgacata ttaaatgaaa aatatgcgat
    13621 ttgtatcgca gactcaagtg gagagtttaa agcttatagg catcaagtgg ctaactttgc
    13681 cgaagaaaga gaagacatta aagcgattca tcaactaatg attgaagact taaagcaaag
    13741 agaaatggac ggcccatttg aaaaagattc actttatatt atcaatgatt ttaaaacatt
    13801 tattgattgc acgtatattc cggaagatga tgttaaaaag cttattacaa aaggaccaga
    13861 acttggcttg aacattttat ttgtcggcat tcataaagaa ttaatagatg cttatgataa
    13921 acagattgat gttgcacgta aaatgattaa ccaatttagt ataggtattc gtatttcaga
    13981 ccaacaattc tttaaattta gatttattca acgagaacct gttattaaag aaaatgaagc
    14041 atatatggtc gcaaaccaag cttatcaaaa gattagatgg tttaaatagc aatgaattaa
    14101 ataggaggga ggtatgttat gaattttaat gatattgaaa caatggttaa gtcgaaattt
    14161 aaagatatta aaaagcatgc tgaagagatt gcgcatgaaa ttgaagttcg ttctggatat
    14221 ttaagaaaag ctgaacaata taagcgatta gaatttaatt tgagttttgc actagatgat
    14281 attgaaagca cagcaaagga cgtacaaact gcaaaatcta gtgctaataa ggacagtgta
    14341 actgttaagg gaaaggcgcc caatacgtta tatattgaaa aaagaaattt gatgaaacaa
    14401 aagcttgaaa tgttgggtga agatatcgat aaaaataaag aatccctcca aaaagctaag
    14461 gaaattgctg gcgaaaaggc aagtgaatat tttaataaag caatgaatta atattgaggt
    14521 gaagatatgg gtggatataa aggtattaaa gcagatggtg gcaaggttga tcaagcgaaa
    14581 caattagcgg caaaaacagc taaagatatt gaagcatgtc aaaagcaaac gcaacagctc
    14641 gctgagtata tcgaaggtag tgattgggaa ggacagttcg ccaataaggt gaaagatgtg
    14701 ttactcatta tggcaaagtt tcaagaagaa ttagtacaac cgatggctga ccatcaaaaa
    14761 gcaattgata acttaagtca aaatctagcg aaatacgata cattatcaat taagcaaggg
    14821 cttgataggg tgaacccatg atgaaagatg ttaagcgaat agattatttt tcttacgaag
    14881 aattaacaat tttaggtggt agtaaattgc ctctcgtaaa ttttgaattg tttgatccat
    14941 caaattttga agaagctaaa gctgctttaa ttgaaaagga attagtaaca gagaatgaca
    15001 agttaactga tgcaggtttt aaagtggcta cattagtcag agagtatatt agcgccattg
    15061 taaatattcg aattaatgat atgtattttg caccatttag ctatgaaaaa gatgaatata
    15121 ttttgttaag ccggtttaaa aataatgggt ttcaaatacg aattatcaat aaagacattg
    15181 catggtggtc gattgtacaa tcatatcctt tattgatgag acaagaaaag tccaatgatt
    15241 gggactttaa acaaattgac gatgaaacat tggagaactt aaataatgaa agtatcgata
    15301 cgattgggcg tgttttagaa attgaaatat acaatcatca aggtgaccct caacaaagtt
    15361 tatataacat ttatgaacaa aatgatttgt tattcattcg atacccatta aaagataaag
    15421 tgctgaatgt tcatattggt gtcattaata catttatacg agaattattt ggattcgata
    15481 ctgatgaaaa tcatattaat aaagcagagg agtaatgacg ttgagtggaa aaattagtgt
    15541 taaagctgaa acgattgcac atgttgtaaa agaattggaa agcataagtc aaaagtatga
    15601 tgaaatagct caaaactttg gaaaaatagc gcaattaaat tactacagta gtgaaaaagc
    15661 tgcacattct atggaaaatg gctatagtag tgctgcaaca gtcattagtg gtctcaaagg
    15721 tccattgagt acactcggtg gtggcgtcat gaattcagca caaaagttct ttgaagcaga
    15781 tgaacattgg ggtacggaat ttgccaagct ttactataat attgagggat aggtgcatga
    15841 catgacaaaa gatattgaat atctaacagc tgattatgac aatgaaaagt catctatcca
    15901 aagtgtaata gatgcaatag agggtcaaga cttcttagat gtagatacaa caatggatga
    15961 tgcggtaagc gatgtcagtt ctttagacga agatggcgca atatcattaa caagtagtgt
    16021 agtaggtcca caaggatcta aattaatggg gtattatcaa aatgagttat atgattatgc
    16081 atctcaatta gattcgaaaa tgaaagaaat tattgacacg ccatttatag aagatataga
    16141 taaagcattc aaaggtataa cgaatgttaa attggaaaat atactaatta aaaatggtgg
    16201 tggacatggt agagatacct atggggcttc tgggaaaatt gcaaagggag atgccaagaa
    16261 aagtgacagc gatgtttata gcatcgatga aatattaaaa tcggatcaag aatttgtaaa
    16321 agtaattgat cagcattaca aagaaatgaa aaaagaagat aagaaattat ctaaaagtga
    16381 ttttgaaaaa atgatgactc agggcgcttc ttgtgattac atgacagtag ctgaagcgga
    16441 agagctagag gagcaaaaga aaaaagaaga agctatagag attgcagcac tagctggtat
    16501 ggtagtttta tcttgtatta atcctgttgc tggagcagta gctattggtg cttattccgc
    16561 ttattcagca gcaaatgcag ccacaggaaa aaatattgta actggaagaa agctatctaa
    16621 agaagaacga atcatggaag gactttcgct tattccattg ccaggtatgg gcttcctcaa
    16681 aggtgctggg aaaagtttaa tgaaattagg cttcaaaggc ggagaaaaat ttgcagttaa
    16741 aacaggattg caaaagacaa tgcaacaagc agttagtcgt atttcaccta aaatgggaat
    16801 gatgaaaaac agtgtgttga atcaatctcg taactttgct caaaatactc atgttggaca
    16861 aatgctgagt aacatgcgtg gtcaagcaac tcatactgtt caacaaagta gaaattggat
    16921 tggacaacaa gcacaaaatg tcaaacgaat agtgaataat ggacttgata aagaaatagc
    16981 acatccattt aaacaacaac ttgcaccagc gggaatgggt ggtataaaat ttgctgaaac
    17041 aactactttg agaaacatgg gtcaaaacat aaagcgtgct gttacaccac aaaatcacgt
    17101 gacacatggt ccaaaagata gtatggtgag aagtgaaggc aaacatagta taagtagcca
    17161 tgaaatgaat tcatcaaagt atgttgaatc accaaactac accaaggttg aattcggaga
    17221 acactatgca agacttagac ctaagaaact aaaggcgaat attgaataca caacacctac
    17281 tggtcacata tatcgaaccg atcataaagg tcgcataaaa gaagtttatg tagacaatct
    17341 ctctctaaaa gatggggatc gtaatagcca tgcacaaaga actgtggggg gagaggatag
    17401 attaccagac gatgatggag gtcacttaat cgctagaatg tttggtggtt caaaagacat
    17461 tgataacctt gtggcacaaa gtaaatttat caaccgtcca tttaaggaga aaggtcattg
    17521 gtataatctt gagaaagagt ggcaagagtt cttaaactct gggaaagagg tgaaaaatat
    17581 taaaatggaa gtaaaatata gcggtaatag tcaaagaccg actatattta aagttgaata
    17641 tgaaattaat ggtgaaagaa atattagaag aatattaaat aagtagaggt gccaacatga
    17701 catttgaaga gaagcttagc aaaatataca atgaaattgc gaatgagatt agcagtatga
    17761 taccggtaga gtgggaaaaa gtatatacaa tggcttatat agatgatgga ggaggtgaag
    17821 tattctttaa ttatactaaa ccaggtagtg atgacttgaa ttattacacc aatataccta
    17881 aggagtataa catttctgtg caagta
//
LOCUS       DAMQWL010000048        17550 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.048, whole genome shotgun sequence.
ACCESSION   DAMQWL010000048 DAMQWL010000000
VERSION     DAMQWL010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 17550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17550
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.048"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(77..418)
                     /locus_tag="PF788_001444"
     CDS             complement(77..418)
                     /locus_tag="PF788_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303708.1"
                     /translation="MTNITKEVFDNLEQEIDLFAKNKTLGSSEAKPYLDEYHSKIIDY
                     FKQVNDITGNIDFDKLNQYPVVPMNFKERYDYMIERKYHFMGYRQMKTFKTELIKMNA
                     SYQTRLKNKQV"
     gene            complement(423..1082)
                     /gene="nth"
                     /locus_tag="PF788_001445"
     CDS             complement(423..1082)
                     /gene="nth"
                     /locus_tag="PF788_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDG6303709.1"
                     /translation="MVSKKKALEMIDVIANMFPDAECELKHDNPFELTIAVLLSAQCT
                     DVLVNRVTTELFKKYKTPEDYLAVSDEELMNDIRSIGLYRNKAKNIKKLCQSLIDQFN
                     GEIPQTHKELESLAGVGRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQ
                     VEDRLCSVIPRDRWNRSHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKASLKE
                     A"
     gene            complement(1072..1758)
                     /locus_tag="PF788_001446"
     CDS             complement(1072..1758)
                     /locus_tag="PF788_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HDG6303710.1"
                     /translation="MDKYQLKARPVVIRRELLDHYSDLGLDEQDLVILLKLIYASETS
                     NKQPSIELLQKGSTMQPRDITMVIQNLIQRELLELQVQKDEEGRFTEYMNLDPFFEKL
                     SHILKQQSMETKELNSKEKFKQLFRVLEDTFARPLSPYEIETLNQWIDVDKHDTAIIQ
                     AALDEANSLNKLSFKYIDRILLNWKKNNVKTIDDSRKIREKFNKPKMTHTVKTVPKFD
                     WLNGENLDGK"
     gene            complement(2086..3378)
                     /gene="asnS"
                     /locus_tag="PF788_001447"
     CDS             complement(2086..3378)
                     /gene="asnS"
                     /locus_tag="PF788_001447"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDG6303711.1"
                     /translation="MKTTIKQAKDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQ
                     GVVVKSEVDEEVFKLAKEITQESSLYVTGTITEDNRSDLGYEMQVKSIEVISEAHDYP
                     ITPKNHGTEFLMDHRHLWLRSKKQHAVMKIRNEVIRATYEFFNKDGFTKVDPPILTAS
                     APEGTSELFHTKYFDQDAFLSQSGQLYLEAAAMAHGKVFSFGPTFRAEKSKTRRHLIE
                     FWMIEGEMAFTNHAESLEIQEQYVTHVVKSVLENCKLELKILERDTSKLEKVATPFPR
                     ISYDDAIEFLKAEGFDDIEWGEDFGAPHETAIANHYDLPVFITNYPTKIKPFYMQPNP
                     ENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGS
                     VPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNRLYP"
     gene            complement(3700..6393)
                     /locus_tag="PF788_001448"
     CDS             complement(3700..6393)
                     /locus_tag="PF788_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase DinG"
                     /protein_id="HDG6303712.1"
                     /translation="MGMATYAVVDLETTGNQLDFDDIIQIGITFVRNNQIIDTYHSMI
                     RTNLEIPPFIQALTSIEENMLQQAPYFNQVAQEIYDKIKDCIFVAHNVDFDLNFIKKA
                     FKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAK
                     LMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQYDAKPLDKSYEKFEQII
                     YRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETILDQLMHSEKAMIEA
                     SLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAMNEALNFKINALL
                     IKSKSDYISLGLISQILKDDTSNYEVNILKMQLLIWITETPSGDIQELNLKGGQKMYF
                     DQKIETYVPARHDVHYYNFIKRNAQNIQIGITNHAHLIHSDVENSIYQLFDDCIVDEA
                     HRLPDYALNQVTNELSYADIKYQLGLIGKNENEKLLKAIDQLEKQRILEKLDIAPIDI
                     FGLKASMNEIHELNEQLFSTIFTIINDSDVYDDDIHRFHNVFTFETKDILKDLHAIID
                     KLNKTLEIFNGISHKTVKSLRKQLLYLKDKFKNIEQSLKAGHTSFISIKNLSQKSTIR
                     LYVKDYAVKDVLTKQVLEKFKSLIFISGTLKFNHSFEAFKQLFNKDVHFNTFEVNTSL
                     QSAKNTSVFIPSDVASYQYKNIDEYVASIVSYIIEYTTITSSKCLVLFTSYKMMHMVQ
                     DMLNELPEFEDYVVLTQQQNQNYKIVQQFNNFDKAILLGTSTFFEGFDFQANGIKCVM
                     IAKLPFMNKHNAKYWLMDSEFTSTFKEYVLPDAVTRFRQGLGRLIRNENDRGIIVSFD
                     DRLINSNYKNFFEQTLENYRQKKGDIQQFGKLLRQIQKKKK"
     gene            complement(6417..7388)
                     /locus_tag="PF788_001449"
     CDS             complement(6417..7388)
                     /locus_tag="PF788_001449"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDG6303713.1"
                     /translation="MSKYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLK
                     LEGCKIDSVNHKGHLLQQLPDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAAKKSL
                     VGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALG
                     IRDAIQHFSQDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLE
                     NFDESIRHRATSIQLHDKNKLDRYQFLEILLQEIEKRYNQFLTLPFSEIREEYTAASN
                     IWNRTLLFTENDKQFKGQAIDLDYDGYLIVRDEAGESHRLISADIDF"
     gene            complement(7375..8577)
                     /locus_tag="PF788_001450"
     CDS             complement(7375..8577)
                     /locus_tag="PF788_001450"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499992.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HDG6303714.1"
                     /translation="MDKSLFEQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDI
                     TTSATPDEIESIFSHTIPVGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFV
                     RDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMI
                     RCLRFQSQLSFDIATETFEAMRIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKS
                     LKAFNYMPYFEHLDMNQINVTEAIDLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQ
                     YIQIMNALPSIITKEQLKMFVYDYDTHLIKNVMVAADVLKANDIQGHEPLIVNLQTID
                     ETLHRLPMHNRKDMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILK
                     WVDNHVKI"
     gene            complement(8582..9724)
                     /gene="bshA"
                     /locus_tag="PF788_001451"
     CDS             complement(8582..9724)
                     /gene="bshA"
                     /locus_tag="PF788_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-alpha-D-glucosaminyl L-malate synthase
                     BshA"
                     /protein_id="HDG6303715.1"
                     /translation="MKIGITCYPSMGGSGIIATELGIKLAERGHEVHFITSNIPFRIR
                     KPLPNMIFHQVEVNQYAVFQYPPYDITLSTKIAEVIKEYDLDLLHMHYAVPHAICGIL
                     AREMSGKDIKIMTTLHGTDITVLGYDHSLQGAIKFGIEKSDIVTSVSKSLAQETHEII
                     ETNKEIIPIYNFVRENEFPTKHNTALKSQFGIAPDEKVLIHVSNFRQVKRIDTIIETF
                     AKVREKIPSKLILLGDGPELVPMRQLTKELNVEEDVLFLGKQDCVSEFYQLSDLVLLL
                     SEKESFGLTLLEAMKTGVVPIGSNAGGIKEVIKHGETGFVVDVGDCDSASDYAIRLLE
                     DKVLYNKLQKNMLADIAERFGSELITDQYEYYYQKMLNEHNKSKGE"
     gene            complement(9965..10282)
                     /locus_tag="PF788_001452"
     CDS             complement(9965..10282)
                     /locus_tag="PF788_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HDG6303716.1"
                     /translation="MKSMVEMQREVDEYIGQFKTGYFSPLANLARLTEEVGELAREIN
                     HTYGEKKKKDSEEANTIKAELGDNLFVLLCLANSMGIDMTESFNETMEKFNTRDKNRF
                     ERK"
     gene            complement(10619..11299)
                     /locus_tag="PF788_001453"
     CDS             complement(10619..11299)
                     /locus_tag="PF788_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002456509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metallopeptidase"
                     /protein_id="HDG6303717.1"
                     /translation="MIIYFVILMVLPLWAQHKVKSNYEKYSQVRSTSGKTGREVALEI
                     LHANGIYDVEVVKGEGFLTDHYDPKKKVVSLSPANYDRPSVAGTAIAAHEVGHAIQDH
                     QGYWFLRFRAALVPVANLGSSLSYMIIMLGIILTAIGSAFGSTALWIGAGLMSLAVLF
                     SIVTLPVEFDASSRAMKQITALNIVNEKEYKHARKVLSAAAMTYVAATAVAVAELVRI
                     ILIARSSD"
     gene            complement(11371..11958)
                     /locus_tag="PF788_001454"
     CDS             complement(11371..11958)
                     /locus_tag="PF788_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1405 domain-containing protein"
                     /protein_id="HDG6303718.1"
                     /translation="MTIKAFWQYTLYQRSWLMMLLICNILGMIYGYIWYGEQLSHTPW
                     HFKIFVPDSPTAILYLVISISLILIQKQNSIIDALAFVTLFKYGIWAVIMNILFIIEQ
                     GDITVNGLVLMFSHSIMAVQAIYFYPRFKRSMIGISVAMIWVFLNDYIDYFHLQFPYY
                     DFITTHVWQIGVLSCCLSVFGLLLYIELNKLLKCK"
     gene            complement(11948..12523)
                     /locus_tag="PF788_001455"
     CDS             complement(11948..12523)
                     /locus_tag="PF788_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpiB family protein"
                     /protein_id="HDG6303719.1"
                     /translation="MSETFNQIKESFIEYLLFQYRFKSRIAVWVLNYIKVNEAKLANI
                     HFVDTKINHHETLEIAEVGSHASAIQFTKRNIKLMNTNEIFDYIANHNCAFDIQIHFA
                     NVSKREQRLDDLIVAQLTESPSYQTYLHDLNSMAIDRHKHALLIDYLLHNIDLSLQMN
                     EKQRFYQLTQILNTLKLVNKHNQFEDLADDN"
     gene            complement(12537..13781)
                     /locus_tag="PF788_001456"
     CDS             complement(12537..13781)
                     /locus_tag="PF788_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000389522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303720.1"
                     /translation="MEDIYKLIDDINLQKLENLDSRVNEAITTDNDDALFILGETLYN
                     FGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSYVEPSPEKLMLE
                     ADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETG
                     EYQVNGVNLFSRMADCSLQSGNYSDAIRLYDEINEDEMTSEDYLKKAISYDKNDITQE
                     AIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGC
                     LEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLD
                     PTFMWHLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMSDYYFYLIEIGQKEQAITIL
                     NQLLELEPSNENWHDELSRLQS"
     gene            complement(13788..15086)
                     /gene="aroA"
                     /locus_tag="PF788_001457"
     CDS             complement(13788..15086)
                     /gene="aroA"
                     /locus_tag="PF788_001457"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDG6303721.1"
                     /translation="MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYK
                     PLLGEDCRRTMDIFRLLGVEIKEDDEKLVVTSPGYQSFNTPHQVLYTGNSGTTTRLLA
                     GLLSGLGIESVLSGDVSIGKRPMDRVLRPLKLMDANIEGIEDNYTPLIIKPSVIKGIN
                     YQMEVASAQVKSAILFASLFSKEPTIIKELDVSRNHTETMFKHFNIPIEAEGLSINTT
                     PEAIRYIKPADFHVPGDISSAAFFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMG
                     GNIQLFNQTTGAEPTASIRIQYTPMLQPITIEGELVPKAIDELPVIALLCTQAVGTST
                     IKDAEELKVKETNRIDTTADMLNLLGFELQPTNDGLIIHPSEFKTNATVDSLTDHRIG
                     MMLAVASLLSSEPVKIKQFDAVNVSFPGFLPKLKLLENEG"
     gene            complement(15096..16160)
                     /locus_tag="PF788_001458"
     CDS             complement(15096..16160)
                     /locus_tag="PF788_001458"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDG6303722.1"
                     /translation="MKLQTTYPSNNYPIYVEHGAIDHISTYIDQFDQSFILIDEHVNQ
                     YFADKFDDILSYENVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGAT
                     GDFAGFIAATLLRGVHFIQVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYD
                     LDFLKTLPFEQILSGYAEVYKHALLNGESATQDIEQHFKDREILQSLNGMDKYIAKGI
                     ETKLDIVIADEKEQGVRKFLNLGHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFD
                     SKHDINHYIQYLIQLGYPLDMITDLDFETLYQYMLSDKKNDKQGVQMVLIRQFGDIVV
                     QHVDQLTLQHACEQLKTYFK"
     gene            complement(16186..17352)
                     /gene="aroC"
                     /locus_tag="PF788_001459"
     CDS             complement(16186..17352)
                     /gene="aroC"
                     /locus_tag="PF788_001459"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDG6303723.1"
                     /translation="MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYG
                     RGRRMQIEKDTVEIVSGVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMK
                     RTITKPRPGHADLVGGMKYNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIY
                     SRVVEIGGIKDKDFYDSETFKANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVV
                     QVVVENMPVGVGSYVHYDRKLDGKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEI
                     LYNSEIGYYRGSNHLGGLEGGMSNGMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKAT
                     IERSDSCAVPAASIVCEHVVAFEIAKALLEEFQSNHIEQLKQQIIERRQLNIEF"
BASE COUNT         5552 a         3231 c         2338 g         6429 t
ORIGIN      
        1 cacctaacat aattataaat atgtgtgcat gaattagttt tatatatttt caacattagg
       61 aaatgatcaa tcttgtctat acctgcttat tctttaacct tgtttgataa ctagcattca
      121 ttttaatcaa ttcagtttta aaggtcttca tttgtcgata gcccataaaa tgatatttac
      181 gttcaatcat ataatcatat ctttctttaa aattcattgg cacaacagga tattgattta
      241 atttatcaaa atcaatattg ccagttatgt cattaacctg cttaaaataa tcaataattt
      301 tactatggta ttcatccaag tagggctttg cttcactaga acctaatgtc ttatttttgg
      361 caaataaatc aatctcttgt tctaaattat caaatacctc ttttgtaata tttgtcatgt
      421 tatcacgctt ctttcaaact agctttataa cgtttttgtc cttctctaca atcttctaat
      481 agtggacaaa tatcgcattt aggttttcgg gctaaacagt ggtatcttcc aaagaaaatg
      541 agttgatgat ggctcctatt ccatctatct ctaggtatga cagaacataa acggtcttct
      601 acctgtctca cattatcttt ccaacgatta atacctaagc gtttagaaac acgttctaca
      661 tgcgtatcaa cagctaatga aggttcatca aatgctacac tcatgactac attagcagtt
      721 ttacgtccta cacctgctaa actttctaat tccttatgtg tttgtggtat ttctccatta
      781 aattgatcaa tcaaagattg acaaagtttc ttaatattct tagctttgtt acgatacaga
      841 ccgatagaac gaatatcatt cataagttct tcatcactga ctgccaaata atcttcaggc
      901 gttttgtatt ttttaaacag ctcagttgtt actctattta ctagaacgtc tgtacattgc
      961 gctgacaata atacagcaat agttaattcg aacggattat catgttttaa ttcacattct
     1021 gcatccggaa acatatttgc tataacatca atcatttcta atgctttttt cttacttacc
     1081 atcaaggttc tccccgttta accaatcaaa tttaggtacc gttttaactg tgtgcgtcat
     1141 tttcggttta ttgaattttt ctcttatttt tctagaatcg tcaattgttt tgacattgtt
     1201 tttcttccaa ttaagtaaaa tacgatctat atatttaaag ctaagtttat tcaaactatt
     1261 cgcctcgtct aatgccgctt gtataattgc agtatcgtgt ttatcaacat caatccattg
     1321 atttaacgtt tctatttcat atggagataa cggccttgca aatgtatcct ctaaaactct
     1381 aaataattgt ttaaattttt ctttactatt tagctctttc gtttccatac tttgttgctt
     1441 caatatatga cttaattttt cgaaaaaagg atctagattc atatattcgg taaatctacc
     1501 ttcttcatct ttttgaactt gtaattctag caattcacgt tgtatcaaat tttgaataac
     1561 cattgtaata tcacgtggtt gcatagttga gcccttctga agcaattcaa ttgaaggctg
     1621 tttatttgat gtttcggaag cataaatcaa tttaagcaaa atgactaaat cttgctcatc
     1681 taaacctaag tcactgtaat ggtctaataa ttctcttcgt atcactacag gtcttgcttt
     1741 taattgatat ttatccatgt tcgtgccccc ttttaaattt aaccattact taatagtata
     1801 aatcattttc tttaattttc gactaaaatg cttaatatat ttaactagta gcaaacaaat
     1861 tttaaataac agtatttttt aacactagat tttaacaatg aactttatgg ataatcagat
     1921 gaactattta ttttccaaat atagttacta aacaaaagtt tgttcatgat taatataagc
     1981 cgttatcaat cttcattttc caagaataaa tcgcccagct attaatatag gctggacgat
     2041 tctttttatt atcataatat atattttaag taacgaccct aaaacttatg gatataaacg
     2101 gtttaataat cttgggaatg gcgctgtttc acgaacgtgt tcaacaccag aaatccatgc
     2161 tactgtacgc tctaaaccta aaccaaatcc acagtgtggc acactaccat aacgacgtaa
     2221 gtctaagtag taactatatg cttcttcgtc taatccatgt tctttaacgc gttgttctaa
     2281 caattctaag tcatccacac gttcagatcc accaataatt tcaccgtatc cttcaggtgc
     2341 aattaagtct gcacataata cagtttcttc attttcagga tttggttgca tatagaaagg
     2401 cttaatttta gttggataat tagtaataaa caccggtaaa tcataatgat tagcaatggc
     2461 tgtttcatgt ggcgcaccaa aatcttcgcc ccattcaata tcatcaaagc cttctgcttt
     2521 taagaattca attgcatcat catatgaaat tctagggaat ggtgtcgcaa ctttttcaag
     2581 ttttgatgta tcacgctcta aaattttcaa ctctagttta caattttcta aaactgattt
     2641 tacaacatgt gttacatatt gttcttgaat ttctaaactt tcagcatgat ttgtgaaagc
     2701 catttctcct tcaatcatcc agaactcgat caagtgtcta cgtgtttttg atttttcagc
     2761 tctgaaagtt ggaccaaatg aaaatacttt tccgtgtgcc attgctgcag cttctaagta
     2821 taactgacca ctttgagata aaaacgcatc ttgatcaaag tatttagtat ggaataattc
     2881 acttgtacct tctggcgcac ttgctgtcaa aattggtgga tcaacctttg taaatccatc
     2941 tttgttgaaa aattcatacg ttgcacgaat aacttcattt ctaattttca ttacagcatg
     3001 ttgtttttta gaacgtaacc ataaatgacg gtgatccatt aagaattctg taccatgatt
     3061 tttaggtgta atcggatagt catgcgcttc tgaaataact tcaattgatt tcacttgcat
     3121 ttcgtatcct aagtcagaac gattatcttc tgtaattgtg cctgtaacgt atagagatga
     3181 ttcttgagta atttctttcg caagtttgaa tacctcttca tcaacttctg atttaactac
     3241 tacgccttgc ataaagcctg ttccatcacg taattgtaaa aaggcgattt taccacttga
     3301 acgtttattt gttaaccaag caccaattgt aacgtcttgg tttaaatgat ctttcgcttg
     3361 tttaatcgtt gttttcataa ccattctcct atttattttt tcgttataca atactcattc
     3421 attttaacaa aatccgcttt caagttctag aactagacta aaagataacg tgtaaatggt
     3481 aatgatttac gcacagattt gaacattaat ttatattaag acaatacaat catcagtttc
     3541 agacaaaata tataataaag cctcaatatt attagtatga aggtcgtttt ttgtgctaac
     3601 attcaagttt aattataaaa ctcaaatttt gacgaccaaa caaaaattct tgtaacagaa
     3661 catagcacat gtcatgtcac aagaatttta ctttgtattt cactttttct ttttttgaat
     3721 ttgtcttaat aattttccaa actgttgaat gtcgcctttt ttctgacgat aattttcaag
     3781 tgtttgttca aaaaagtttt tataattact gtttatgagt cgatcatcaa atgaaactat
     3841 tatgccgcga tcattttcat ttctaattaa tcttccaagt ccttgtctaa aacgtgtaac
     3901 tgcatcaggt aatacatatt ccttgaaagt tgaagtgaat tcagaatcca taagccaata
     3961 ttttgcatta tgcttgttca taaacggtaa cttcgctatc atcacacatt taataccatt
     4021 tgcttgaaaa tcaaaacctt caaaaaatgt tgacgtacca agcagtatgg ccttatcaaa
     4081 attattaaac tgttgtacta ttttataatt ttggttctgc tgttgtgtta atacaacata
     4141 atcttcaaat tctggcaatt catttagcat atcttgtacc atatgcatca ttttataact
     4201 cgtaaataag actaaacatt ttgatgacgt tatagtcgta tattcaataa tatagcttac
     4261 aatcgatgct acatactcat ctatattttt atattgataa gatgctacat cactcggtat
     4321 aaatacactt gtattttttg cactttgtaa cgacgtgtta acttcaaatg tattaaagtg
     4381 aacatctttg ttgaataact gtttaaaagc ttcaaacgaa tgattaaatt ttaaagtacc
     4441 agatataaaa atgagcgatt taaatttttc caatacttgt ttcgttaata catcttttac
     4501 agcgtaatct ttcacatata aacgtattgt tgatttttga gataaatttt taatcgaaat
     4561 gaaactagta tgtccagctt ttaaactttg ttcgatattt ttaaatttat cttttaaata
     4621 caacaactgt ttccgtaatg atttaactgt tttatgacta atgccattga atatttctag
     4681 cgttttattt aacttatcga taatcgcatg taaatccttc aaaatgtctt ttgtttcaaa
     4741 agtaaataca ttatggaagc gatgaatatc atcatcataa acatcagaat cattgataat
     4801 cgtaaatatc gttgagaaca attgctcatt taactcatga atctcattca tactagcctt
     4861 caagccaaaa atatcaattg gtgcaatatc taatttttcc aaaattcgct gcttttccag
     4921 ttgatcaatt gcctttaaca atttttcatt ttcgttttta ccaatcaaac caagctgata
     4981 tttaatatca gcataactca actcatttgt cacttgattt aaggcatagt ctggtaagcg
     5041 atgtgcttca tccactatac aatcatcaaa caattgatat attgaatttt caacatcaga
     5101 atgaattaaa tgtgcatgat ttgtaatacc aatttgaatg ttctgtgcat ttcgcttaat
     5161 aaaattataa taatgaacat cgtgacgtgc cggtacatat gtttcaattt tctggtcaaa
     5221 atacatcttt tgaccacctt ttaaatttaa ttcctgtata tctccggacg gcgtctctgt
     5281 aatccaaatc agcaattgca ttttcaagat attcacttcg taattacttg tgtcatcttt
     5341 taaaatttga ctaataagcc ccaatgaaat gtaatcactt ttacttttaa tcaatagtgc
     5401 attaatttta aaattcaacg cttcattcat tgctggaata tctttttcta acaattgact
     5461 ttgcagtaat ttagtattgg tagaaatcat gacatgcttc ccagtttcaa tattatacat
     5521 caaggccgca agtaaatatg ctaatgattt accactgcct agtgatgctt caatcattgc
     5581 tttttcacta tgcatgagct gatctaatat agtttccgct aaatataatt gttgcggtcg
     5641 atatgttaag ccaagttgat ctacagcttt gctatataaa gacttcaagc tgccattata
     5701 atttgttgtc ggctttttaa aatcaacttg cttacgatag ataatctgtt cgaacttttc
     5761 gtacgattta tccaatggct ttgcatcata ttgcctaacc atctcaaaga aaatatcata
     5821 caaatcgtat ttcaactgtt tacttaaata atataattgc ttcaaagtat ctaacggtaa
     5881 cttttcaaat ttttcaaaag ctaatatcat caatttagca gtagtagcgg catcttcgtc
     5941 agctcgatgg gcatttgcta aggtaatacc atgtgcctct gctaattcac ttaattgata
     6001 gcttttatct gtaggaaaag ctattttaaa gatttctagt gtatctataa cttttttggg
     6061 acgatattga atattacaat ctttaaatgc ctttttaata aaattcaaat caaaatctac
     6121 attatgagct acaaaaatgc aatcttttat cttatcgtag atttcttgtg caacttgatt
     6181 aaaatatggc gcttgttgta gcatattttc ttcaatggat gttaacgctt gaatgaacgg
     6241 cggaatctct aaatttgttc taatcataga atgatatgta tcaataattt ggttattgcg
     6301 cacaaacgtt ataccaattt gaatgatatc gtcaaaatct aattggttgc ctgttgtttc
     6361 caaatccaca acggcatagg ttgccatacc catagctatc tctccttgct ttagtgttaa
     6421 aaatctatat ctgcactaat taaacggtgt gattcacccg cttcatctct aacaattaga
     6481 tagccatcgt aatctaaatc aattgcttgt cctttaaact gtttatcatt ttctgtaaat
     6541 agcaacgttc tattccaaat attagaagct gcagtatatt cttcacgaat ttcagaaaaa
     6601 ggtaacgtta aaaattgatt atatcttttt tcaatttctt gaagtaatat ctctaaaaat
     6661 tgatatctat ctaatttatt tttatcatgt aattgtatac ttgttgctct atgtctaata
     6721 ctttcatcaa agttttctag ttgttgcgtc aaattaatac ctataccaca tattattgct
     6781 tctataccat cattattagc aaccatttca gttaagaaac cacacacttt accattatca
     6841 atatatatat cattcggcca tttcactttg acttcatctt gactaaaatg ttgaatcgca
     6901 tctcttatcc ctaatgcaat aaataaatta aatttagata tcattgagaa tgcaacgtta
     6961 ggtcttaaca cgacagacat ccaaagtcct tgcccttttg aagaactcca atgtctatta
     7021 aatcgcccac gacctttcgt ttgttcatca ctcaagataa aaaatgaaga ttgatttcca
     7081 acaagtgact ttttcgcagc aagttgtgta gaatctattg aatcgtatac ttcactaaaa
     7141 tcaaacaaag cagaactttt tgtatattgg tctattatac cttgatacca aatatctggg
     7201 agctgttgta ataaatgccc tttatgattt actgaatcta ttttacatcc ctctaacttt
     7261 aattggtcaa tcactttttt tactgcagtg cgtgaaatat taagtgattc cgcaatgctt
     7321 tgtccagata tataattcgg tttattttta tagagtaatt gaagtacatc ttgactatat
     7381 tttgacatga ttatccaccc atttcaaaat ttcagtttct tcgttgctta ctttacctgt
     7441 tacaatcgct atctcaattt gtcttagcac atcttttaac cacggaccac ttttggcatt
     7501 taaatgtgcc ataagtacac cgccattaac catcatgtct tttctattat gcataggtaa
     7561 acgatgtaat gtttcatcaa tcgtttgaag gttaacgatt aatggttcat gtccttgaat
     7621 atcatttgcc tttaacacgt ctgctgcaac cattacattt ttaatgagat gcgtatcata
     7681 atcataaaca aacattttta attgttcttt tgtaataata cttggtaatg cattcataat
     7741 ttgaatatat tgattgatat cttttacttg tcggttactt agctttaaag gcttcaatga
     7801 gtaattaata tcaaatttaa ctgatactat agcaatcaac aattctaaat caattgcttc
     7861 agttacatta atttgattca tatcaagatg ttcgaaatac ggcatataat taaatgcttt
     7921 cagcgatttt aaatgattaa aactcttttc aacattaata cctcgcatta atttagttag
     7981 ttcaatcact atacgctcaa ttgataaaaa tttaatatct gccatttgta tacgcatcgc
     8041 ttcgaatgtt tccgttgcaa tatcaaatga taattgtgac tggaacctta aacatcgaat
     8101 catacgtaaa gcatcttctt ggaatcgttc ctcagctata cctacagttc ttattattcg
     8161 attattaata tcttgttgac catcaaaata atcatacaat ttgtatgctg tatccattgc
     8221 tatcgcattc atcgtgaaat ctcgtcgttg caaatcttcg tataaatcac gaacaaatgt
     8281 aacaccactt ggtctacggt gatcgacata atcttcttca gcccggaatg ttgtcacttc
     8341 ataattttca tcattaaaaa ctacatttat cgtgccatgt tctttaccta caggtatcgt
     8401 atgactaaag atagattcta tttcatccgg cgttgcactt gttgtgatat ctatatcatg
     8461 aatatttctt cccatgacat aatctcttac agagccacct acataatatg cttcaaaacc
     8521 attgtcttga atttgttcta atataggcct tgcctgttca aataatgatt tatccatatt
     8581 attactcgcc tttacttttg ttatgctcat ttagcatttt ttgataataa tactcatatt
     8641 gatctgtaat aagttctgat ccaaaacgtt cagcaatatc tgctagcatg tttttctgaa
     8701 gtttgttgta taacacctta tcttcaagta atcggatagc atagtcactc gctgaatcac
     8761 aatcacccac atctacgaca aatccagttt caccatgttt aataacctct ttaattccac
     8821 cggcatttga accaattgga acgacgcctg ttttcatagc ctcaagtaaa gttagtccaa
     8881 agctttcttt ttcacttaat aataatacta agtcagataa ttggtaaaat tcacttacgc
     8941 aatcttgttt ccctaaaaat aaaacatcct cttctacgtt taactctttc gtcaattgac
     9001 gcattggcac taattcagga ccatctccaa gtaaaattaa tttactaggt atcttttcac
     9061 gtacttttgc aaatgtttct ataatagtat ctatgcgttt tacttgtcta aaattcgata
     9121 catgtattaa cactttttca tctggtgcta taccaaattg tgattttaat gctgtgttat
     9181 gtttagttgg aaactcattt tcacgtacaa aattataaat cggtataatt tctttgttag
     9241 tttcaataat ttcatgtgtt tcttgtgcta aagatttact cacacttgtc acaatatcac
     9301 ttttttcaat gccaaattta attgcacctt ggagtgaatg atcatagccc aaaacagtaa
     9361 tatcagtacc gtgtagcgtt gtcataattt ttatatcttt acctgacatc tcacgagcta
     9421 aaatcccaca aattgcatga ggtacagcat agtgcatatg caacaaatca agatcatatt
     9481 ctttaataac ttcagcgatt ttagtactta acgtaatatc atacggtgga tactgaaata
     9541 ctgcatattg attcacttca acttgatgaa aaatcatatt cggtaatggt tttcttattc
     9601 taaacgggat atttgaagtg ataaaatgta cttcgtgacc tcgctctgct aatttaattc
     9661 ctaattctgt ggcaataatt ccagaaccac ccatggacgg gtaacatgtt atacctatct
     9721 tcattcgctt gcccatcctt tctttctatt tctctctatt attctcgatg cgtagataat
     9781 tgtttaaatt taagtttata gtaatgttga gtttataatt tcatatatct aaaaacaggt
     9841 gttgtatata taatcattca tctagttata cttactttaa aaataatata atttcatgcg
     9901 atgcaattca ttgatggatg tttttaatct taatcaaatc caaataaagc atatattttt
     9961 aaattcactt tctttcgaat cgatttttat ctcttgtatt aaacttttcc attgtttcat
    10021 taaagctctc tgtcatatct attcccattg aattcgctaa acataacaac acaaataaat
    10081 tatcacctaa ttctgcttta atcgtatttg cttcctctga atctttcttc tttttttcac
    10141 cataggtatg atttatttca cgtgcaagtt cgcccacttc ttcagtcaat ctagctaagt
    10201 tagctaatgg tgaaaaatat cctgttttaa attgtccaat atattcatca acttcacgtt
    10261 gcatttctac cattgatttc atttctacgt tctccttata ttgcatttct aatatagtat
    10321 atatcaattt gaagtctcat gcatgtttag tgcaatctac tgactctagc taaactagat
    10381 gacaagttgt ttattttaga agtttaataa ttcagtttat ataaatgtaa tgcattccta
    10441 actaaattaa atcaattgaa attgggatta taactttatg atacgtacca ctacaataaa
    10501 ataatatagt gaataatcta ccattagaaa aataagcaca aaaaaactag caaccacaca
    10561 aaaatgtgat tagctagtta ataagtgtct aatttaagtt aattgttaat ctataagatt
    10621 aatcacttga acgcgcaatc aaaataatac gtacaagctc tgctacagcg actgcagttg
    10681 ctgcaacata agtcattgct gctgcagata atactttacg cgcatgcttg tattcttttt
    10741 catttacaat gttcaatgcc gtaatttgtt tcatcgctct tgaactcgca tcaaactcaa
    10801 ctggtaacgt aacaattgag aataataccg ctaatgacat taaaccagca ccaatccata
    10861 aagcagttga accaaatgca ctacctatcg ctgttaagat aatacctaac atgatgatca
    10921 tataacttaa tgaactccct aggtttgcaa caggtactaa tgctgctctg aatcttaaga
    10981 accaatatcc ttggtgatct tgaatggcat gaccaacttc gtgggctgca attgcagttc
    11041 cagcaactga tggtctgtca tagtttgcag gagatagtga aacaactttc tttttaggat
    11101 cgtaatgatc tgttaagaat ccttcacctt taacaacttc gacatcataa ataccgtttg
    11161 catgtaaaat ttctaatgca acttcacgac ccgttttacc actagttgat ctaacttgtg
    11221 aatatttctc atagttagat ttaactttgt gttgtgccca taaaggaagc accattaata
    11281 ttacgaaata aattatcata gtaaaaattg aagacaataa actcactctc ctttataaat
    11341 attttactgt catttgccgt ttttatcaaa tcatttacac tttaataatt tgtttaattc
    11401 aatataaagc aaaagtccaa aaacacttag acaacatgat aatacaccaa tttgccacac
    11461 atgtgtagtt ataaaatcat aatatggaaa ttgaaggtga aaatagtcaa tataatcatt
    11521 caaaaacacc caaatcatcg ctacactgat tccaatcata gaacgtttaa acctaggata
    11581 gaagtaaatt gcctgaacag ccattatact gtgggaaaac attaatacca aaccatttac
    11641 tgtaatatca ccttgttcaa taataaataa tatattcatt ataactgccc aaatcccata
    11701 tttgaataat gttacaaatg ccagtgcatc gataatacta ttttgttttt gaattaatat
    11761 caatgagata gaaataacta agtataatat tgcagttggg ctatctggaa caaaaatctt
    11821 aaaatgccag ggcgtatgac ttaattgttc accataccat atataaccat aaatcatccc
    11881 taatatatta caaatgagta gcatcattaa ccaagaacgt tgataaagtg tatattgcca
    11941 aaatgcttta attgtcatct gctaagtcct caaattgatt atgtttattt actagcttga
    12001 gtgtatttaa aatttgcgtt agttgataaa aacgttgctt ttcattcatc tgtaaactta
    12061 aatcaatatt gtgtaacaag taatctatta ataacgcatg tttatgccga tctatagcca
    12121 tactatttaa gtcatgaaga taagtttgat aactgggcga ttccgttagt tgagcaacta
    12181 ttaaatcatc tagcctttgc tcacgctttg acacgtttgc gaagtgaatt tgaatatcaa
    12241 aagcacagtt atgattagcg atataatcaa atatttcatt tgtattcatt aactttatat
    12301 tacgcttagt aaattgaatt gcagaagcgt gacttcccac ttctgcaatt tctaatgttt
    12361 catgatgatt aatttttgta tctacaaaat gaatgtttgc caatttcgcc tcattcactt
    12421 ttatatagtt aagcacccaa actgcaatac gcgacttaaa tcgatattga aaaagtaaat
    12481 attcaataaa actttcttta atttgattga atgtctctga catcaaatac cccattttaa
    12541 gattgcaatc ttgataattc gtcatgccaa ttttcgttac ttggctctag ttccaacaat
    12601 tgatttaaaa tagtaattgc ttgttccttt tgaccaattt caattaaata gaaataataa
    12661 tcactcataa aatcaatatt tgttttcatc gttggatatg ctaattcaaa gaaatgttga
    12721 gcttctttat ctcgctcttc ttgaccatag gcgaacgcta aatgccacat gaatgtagga
    12781 tccaaatctt cttcatctac atatgttaat aattcaatga ttgcttcata atcttcttca
    12841 ttacgatata aatcgcttaa aatcaataaa ggttcttggt aagcattatc aacctctaat
    12901 gcttgtttta acaataatac accttcatta gcatcgccgt gttctatttc caaacatcca
    12961 gttgtataca ttaactcttt ataaaattga cttagtcgta atccttcttt acccgtttca
    13021 atggcatctg gataattttt ttcattttca tataatgatt gtaaatacaa gtagccttga
    13081 atataatcag gatctttaga aagtaatgta gtcattattt taattgcttc ttgagtgatg
    13141 tcatttttat cgtaagaaat ggcttttttg agataatctt ctgaagtcat ttcatcttca
    13201 ttaatttcat cgtataagcg aatcgcatca ctatagttac cactttgtaa actacaatct
    13261 gccatacgag agaataagtt tacaccatta acttgatatt caccagtttc taaaacggtt
    13321 tcgtattcag aggtagcacg taaatattga ccatcataat ataacatttc agccaatgca
    13381 aaatggatta ttggatcatt tggctctagt tcaagtgctt cttgtaattt atcaatagca
    13441 acttccatca tattaatttg ttgatataaa tctgcttcta acatcaactt ttcaggtgat
    13501 ggttcaacat aacttaaata ttctaacgct tcgtcagttt gattttcaga cattaaacct
    13561 tcaataaaat aaatcagcaa ttcactttcg tctggatatt tgtgatataa cacgcggaat
    13621 acttccaaac cttgtggcat taatccaaaa ttgtaaagtg tctctcctag aataaataat
    13681 gcgtcatcgt tgtcagtagt tattgcttca ttaacacgag agtctaaatt ttctagtttt
    13741 tgtagattga tatcgtctat taatttatag atatcttcca ttttatatta tccctcattt
    13801 tctaaaagct ttagttttgg taaaaatcct ggaaatgata catttacagc atcaaattgt
    13861 ttgattttga caggctcgct tgaaagtaga gaagcaactg caagcatcat tcctattcga
    13921 tgatcagtta aactatcaac tgttgcattt gttttaaatt ctgacggatg aataatcaat
    13981 ccatcattag ttggttgtaa ttcaaaccct aacaagttta acatatcagc cgttgtatca
    14041 attctatttg tttcttttac ttttaattcc tcggcatctt taattgtact cgtgccaact
    14101 gcttgtgtac aaagtaatgc tattacaggc agttcatcaa ttgcttttgg aactaattct
    14161 ccttcgattg ttattggttg aagcattggt gtgtattgaa tacgaataga agcagtaggt
    14221 tcagcaccag ttgtttgatt gaaaagttgg atattaccgc ccattttttc aacaatatca
    14281 ataatacctg aacgtgttgg attgattcca acattatgaa ttgttacatc acttcctggt
    14341 gtgataagtg ctgcaacaat aaagaacgct gcagatgaaa tatcgccagg aacatgaaaa
    14401 tctgcaggtt taatgtatcg aattgcttca ggggttgtat taattgataa cccttctgct
    14461 tcaattggaa tattaaaatg tttgaacatc gtctcagtat gatttcgact tacatctaat
    14521 tctttaatga tggtcggttc cttagaaaac aaacttgcaa ataaaatggc actttttact
    14581 tgtgcacttg caacttccat ttgataattt atacctttta tgacagatgg cttaataatt
    14641 aatggtgtat aattatcttc aataccttca atattcgcat ccataagttt caatggtctc
    14701 aagacacgat ccattggcct tttaccaatt gaaacatcgc cagacaaaac actttcaata
    14761 cctaaaccac ttaacaaacc tgccaataat cgtgttgtcg taccagaatt acctgtatac
    14821 aatacttgat gtggcgtgtt aaaagattga tatcctgggg aagtcacaac taatttttca
    14881 tcatcttctt tgatttctac acctaacagt cggaaaatgt ccatcgtacg acgacaatct
    14941 tcgccaagta gtggcttata tatagtagat acaccttcag ctagcgacgc caacatgatt
    15001 gcacggtgtg tcattgactt atcgcccggc acttctattt cgccctttaa cggacctgaa
    15061 atatcaatga tttgttcatt taccatttca ttcacctact taaaatatgt ttttaattgt
    15121 tcacatgcat gttgtaatgt tagttgatca acatgttgta caacgatatc tccaaattgt
    15181 ctaatcaaga ccatttgtac accttgctta tcattctttt tatcacttag catatattgg
    15241 tataacgttt caaaatccaa gtcagttatc atgtctaaag gatagccgag ttgtattaaa
    15301 tattgaatat aatgattaat atcatgctta gaatcaaaca aagcattcgc aactataaat
    15361 tgatagataa tgccaaccat cactgcatga ccatgaggta ttttatgata gtattcaaca
    15421 gcatgaccaa atgtatgacc taaatttaaa aatttacgta caccttgttc tttttcatct
    15481 gcaataacaa tatccagctt cgtttcaata cctttagcaa tatatttatc cataccattt
    15541 aatgactgta atatctctct atctttaaag tgctgttcga tatcttgcgt cgctgattca
    15601 ccattcaata acgcatgctt ataaacttct gcatagccac ttaatatttg ctcaaatggt
    15661 aacgtcttta aaaagtctaa atcataaatc acagcagttg gacgataaaa tgcaccgata
    15721 aggtttttac cttgctttga gttaataccc actttaccgc caacactaga atcatgcgct
    15781 agtatagtcg ttggcacttg tataaagtga acgcctcgta aaagtgtcgc cgcaataaac
    15841 ccagcaaaat caccagttgc accaccacca acagcaataa ttgctgtatt acgagttaca
    15901 tgatgggata aaatatactc taatgtttct tgatattgct caaatgtttt cgtcttttca
    15961 ccagctggaa taataacttt atgtacattt tcatatgata aaatatcatc aaatttatca
    16021 gcaaaatatt gatttacatg ctcgtcaatt aatataaaac tttgatcaaa ctgatcaata
    16081 tacgtgctaa tatggtcaat tgcaccgtgt tcaacatata ttggataatt atttgaaggg
    16141 tatgttgttt gtaatttcat gattacacct caattgttct tgttgttaaa actcaatatt
    16201 taattgtctg cgctcaataa tttgttgttt aagttgctca atatgatttg attggaattc
    16261 ttccaataat gcttttgcta tttcaaatgc tacgacatgt tcgcagacga tacttgctgc
    16321 aggaacagca caactatcag aacgttcaat tgttgcttta aagtcttctt tagtattaat
    16381 gtctactgaa tttaatggtt tatataacgt tggaattggt ttcattacac cattaacgat
    16441 aattggcatt ccatttgaca taccgccttc taaaccacct aagtgattag atccacgata
    16501 ataaccaatt tcactattat atagaatttc atcttgaatc tcactacctg gcttttcagc
    16561 tgctttaaat ccttcaccaa agcttacacc tttaaaagca tttatgctga caacaccttg
    16621 tgcaatctta ccatctaact tacgatcata atgcacataa ctacctacac caacaggcat
    16681 attttcaact acaacttgaa cgacaccgcc aattgaatct ccttcatttt tagcttcgtc
    16741 aattttatct cgcattgctt gtgcgatact gtcatcaatt acacgaacat cattacgatc
    16801 aagatttgct ttaaatgttt ctgaatcata aaaatcttta tctttaattc cacctatttc
    16861 aacaacacga ctgtatatat cgatatctaa ctgttgtaat aacactttac ataaggcacc
    16921 gactgcaact cgagctgctg tttctctagc agatgatcgc tctagcacat ttcgtaaatc
    16981 acgatgatta tatttcatac ctccaaccaa atctgcatga ccaggtcttg gttttgtaat
    17041 agtacgtttc atattttcac gttcttcttc acttattgga gctgctccca taatttttct
    17101 ccaatgcgta aagtcatcat tggttacaac catagtaatt ggactaccta atgtataacc
    17161 atttctaacg cctgatacta tttctactgt atctttctca atttgcatac gacgtccacg
    17221 tccgtaaccg ccttgacgct taaacatttc tttattaata tcctcaacct taatttctat
    17281 atttgcaggt acaccttcaa caataactgt taattgaggt ccatgtgatt ctcctgatgt
    17341 taggtatctc atacacactc gctcctttca tacttccacg ataacattat aatatgttgt
    17401 taatcttatc atattcattg tgcattcata aatgtttgtt ttcaagctca attaagaaaa
    17461 tggatgacat ctcattttaa atgtcagaat tatcttaata ttaaacgaac taaaattaat
    17521 tataatatat tcgtctgtag aaaagtatca
//
LOCUS       DAMQWL010000049        17067 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.049, whole genome shotgun sequence.
ACCESSION   DAMQWL010000049 DAMQWL010000000
VERSION     DAMQWL010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 17067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17067
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.049"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(66..713)
                     /locus_tag="PF788_001460"
     CDS             complement(66..713)
                     /locus_tag="PF788_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDG6303724.1"
                     /translation="MEQLPQVGFMKSFVLFWKNYVNFKGRSRRSEYWYMALWHLILMV
                     PAVCVLIINLFLFFISIAADNETLIVMSILMIILTSVYTFVYSLATFIPNLALCVRRF
                     HDISRTMLFPMIMTVFSIIFYIVLQIIDSYYDSDFTLMPMGLNILLVLLYFVYLGLTI
                     VMIVFLCFDSKPANKYGESPKYPSTIKNQPVTSETPEKACTSETPKTPEETDNQL"
     gene            1112..1720
                     /locus_tag="PF788_001461"
     CDS             1112..1720
                     /locus_tag="PF788_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HDG6303725.1"
                     /translation="MDFVNNDTRQIAKNLLGVKVIYQDTTQTYTGYIVETEAYLGLND
                     RAAHGYGGKITPKVTSLYKRGGTIYAHVMHTHLLINFVTKSEGIPEGVLIRAIEPEEG
                     LSAMFRNRGKKGYEVTNGPGKWTKAFNIPRAIDGATLNDCRLSIDTKNRKYPKDIIAS
                     PRIGIPNKGDWTHKSLRYTVKGNPFVSRMRKSDCMFPEDTWK"
     gene            2057..3265
                     /gene="gltS"
                     /locus_tag="PF788_001462"
     CDS             2057..3265
                     /gene="gltS"
                     /locus_tag="PF788_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HDG6303726.1"
                     /translation="MIELNAITTLCLACILYLLGKAIVNHVNFLKRICIPAPVIGGLI
                     FAILVAALDSFGMVKIKLDASFIQDFFMLAFFTTIGLGASLKLFKLGGKVLLLYFMFC
                     AIISVIQNIVGVSLAKVLNIKPLLGLTAGSMSMEGGHGNAAAYGKTIQDLGIDSALTA
                     ALAAATLGLVFGGLIGGPVVKFLIKRYNLKPQHSDDTFKDYSQVAYNEHLHSKFNATE
                     VFFIQFTIVVFCMAVGSYFSHLFTAQTGINVPIYVGSLFVAVIVRNISESFNFNIVDL
                     KITNQIGDVALGIFLSLALMSIQLIEIYKLAIPLIIIVLVQVVVMILFAVLILFRGLG
                     KDYDAAVMVGGFIGHGLGATPNAMANLDVITKKYGNSPKAYLVVPIVGAFLIDLIGVI
                     VIMGFIQWFS"
     gene            complement(3313..4362)
                     /locus_tag="PF788_001463"
     CDS             complement(3313..4362)
                     /locus_tag="PF788_001463"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HDG6303727.1"
                     /translation="MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVN
                     DIDLTSQTPDLTMAYPVYINAMTGGSEWTKNINEKLAVVARETGLAMAVGSTHAALRN
                     PRMAETFTIARKMNPEGMIFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPE
                     GNREFVTWLDNIASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNF
                     VDIENERRANKDMDYLSSWGQSTVESLLETTAYQSEISVFASGGLRTPLDAIKSLALG
                     AKATGMSRPFLNQVENNGIAHTVAYVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPE
                     ILSWIEQRNLNIHRG"
     gene            complement(4393..5340)
                     /gene="corA"
                     /locus_tag="PF788_001464"
     CDS             complement(4393..5340)
                     /gene="corA"
                     /locus_tag="PF788_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDG6303728.1"
                     /translation="MALKIRYQTTYEPFKVVDDIKEIPKDATIVWYDFDEPNEQENEW
                     FKAHFNFNDLEVDDAINGMPRAKYKSYKDYQYLVFHSIMGSNYSPIALNIFIQDNVLV
                     TYHHQTLESLNKVVYKYMNTLDAELDCADVVILILDMMVDKYFNFVYALEDSVYHFED
                     RHVDDRFNKMVMDSVFKLRSDLIKVKRVLFPMQELIDTMKQNGDLIIDNKHSLYIQHI
                     DDHLIKQRNIIRTAQEMTNEIRENFESYTSFRMNSIMQVLTLVSVIFSPLTFIAGIYG
                     MNFVNMPALHLHYGYYICLAVMFVIAVVLIIFFRRKKWF"
     gene            5437..5928
                     /locus_tag="PF788_001465"
     CDS             5437..5928
                     /locus_tag="PF788_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HDG6303729.1"
                     /translation="MVIIKQLFTHTQTVTSEFIDHNNHMHDANYNIIFSDVVNRFNYS
                     HGLSLKERENLAYTLFTLEEHTTYLSELSLGDVFTVTLYIYDYDYKRLHLFLTLTKED
                     GTLASTNEVMMMGINQHTRRSDAFPESFSTQIAHYYKNQSTITWPEQLGHKIAIPHKG
                     ALK"
     gene            5925..6344
                     /locus_tag="PF788_001466"
     CDS             5925..6344
                     /locus_tag="PF788_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303730.1"
                     /translation="MTDALQQKIHIELLDLLDDVKFELTELNAQKGLYINGPANQLLK
                     RGVHMAYVQGQKQAIDNIMTIVEQQLEDQHFLEHYDKFQNEVAHRNYDKTANFAELSD
                     IPRQFDNFLDQFYQIKGQYFIITHINTLIGDFHSEAH"
     gene            complement(6452..7372)
                     /locus_tag="PF788_001467"
     CDS             complement(6452..7372)
                     /locus_tag="PF788_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000620861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6303731.1"
                     /translation="MIRNRVMNSVVNKYLLHNRSIMFKNDQDVERFFYKREIENRKKH
                     KQPSTLNVKANLEKLSLDDMQVFRFNFRHQIDKKILYIHGGFNALQPSPFHWRLLDKI
                     TLSTLYEVVLPIYPKTPEFHIDDTFQAIQRVYDQLVSEVGHQNVVVMGDGSGGALALS
                     FVQSLLDNQQPLPNKLYLISPILDATLSNKDISDALIEQDAVLSQFGVNEIMKKWANG
                     LPLTDKRISPINGTIEGLPPVYMFGGGREMTHPDMKLFEQMMLQHHQYIEFYDYPKMV
                     HDFPIYPIRQSHKAIKQIAKSIDEDVTQNN"
     gene            7580..8218
                     /locus_tag="PF788_001468"
     CDS             7580..8218
                     /locus_tag="PF788_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303732.1"
                     /translation="MTNPNQRLEPFDETFQQPNIHRGKRYGKKKRSLVSMIIQIIVVI
                     LTAIAGYSMWKQPIFNIVFTKESVDFDGIKNFNETIGKMHQLNINLGNINDLQQGIDR
                     LILVFNGFFILCIVSLVITILTIVFNRTVLKVVNILVLTIMLVITLYFSYIIKALAQE
                     IADVFKKYYLNVPPDQVITEADAIHNGIILLGCSIGLLVISLFFRNRMPRLK"
     gene            complement(8464..10395)
                     /locus_tag="PF788_001469"
     CDS             complement(8464..10395)
                     /locus_tag="PF788_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HDG6303733.1"
                     /translation="MTTTFIISYIILALIIVGVINLFLIRSRKKGKRQQKEQQFTTRQ
                     SNQSKFKASDLDKTTDQSTQRMTHEELRVDNQDDHSQVSLNGYTKGSEKDQEAFTNNK
                     DEEAVAAKNPESEEYKVNEKIKKEHKNFIFGEGVSRGKILAALLFGMFIAILNQTLLN
                     VALPKINTEFNISASTGQWLMTGFMLVNGILIPITAYLFNKYSYRKLFLVALVLFTIG
                     SLICAISMNFPIMMVGRVLQAIGAGVLMPLGSIVIITIYPPEKRGAAMGTMGIAMILA
                     PAIGPTLSGYIVQNYHWNVMFYGMFIIGIIAILIGFVWFKLYQYTTNPKADIPGIIFS
                     TIGFGALLYGFSEAGNKGWGSVEIETMFAIGIIFIILFVIRELRMKSPMLNLEVLKFP
                     TFTLTTIINMVVMLSLYGGMILLPIYLQNLRGFSALDSGLLLLPGSLIMGLLGPFAGK
                     LLDTIGLKPLAIFGIAVMTYATWELTKLNMDTPYMTIMGIYVLRSFGMAFIMMPMVTA
                     AINALPGRLASHGNAFLNTMRQLAGSIGTAILVTVMTTQTTQHLSAFGEELDKTNPVV
                     QDHMHELASQYGGQEGAMKVLLQFVNKLATVEGINDAFIVATIFSIIALILCLFLQSN
                     KKAKATAQKLDADNSINHE"
     gene            complement(10408..11055)
                     /locus_tag="PF788_001470"
     CDS             complement(10408..11055)
                     /locus_tag="PF788_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HDG6303734.1"
                     /translation="MKKMILINVITVVVLLAIGIAGFYFWNKTTSYVTTDNAKVNGDQ
                     IKIASPASGQIKSLNVKQGDKLDKGDKVAIVTVQGQDGETKDMDLKMPQKGTIAKLDG
                     MEGSMVQAGNPIAYAYNLDDLYVTANIDEKDIKDVEVGKDVDVTIDGQKASIKGKVDS
                     IGKATAASFSLMPSSNSDGNYTKVSQVIPVKITLESEPSKQVVPGMNAEVKIHKN"
     gene            11176..11727
                     /locus_tag="PF788_001471"
     CDS             11176..11727
                     /locus_tag="PF788_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDG6303735.1"
                     /translation="MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDY
                     YKDKFDLLDTINSKHKEKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFF
                     KDILVTYPMKTLFIDYINLARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLS
                     NGCNESPEEVADILLANTIKLQN"
     gene            complement(11957..13165)
                     /locus_tag="PF788_001472"
     CDS             complement(11957..13165)
                     /locus_tag="PF788_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HDG6303736.1"
                     /translation="MNDLTHFNKRSPIFIIILGSLTAIGALSIDMFLPGLPDIRHDFQ
                     TTTSNAQLTLSMFMIGLAFGNLFAGPISDSTGRRKPLIIAMIIFTLASLGIVFVHNIW
                     LMVALRFLQGVTGGAAAVISRAIASDMYSGNELTKFMALLMLVNGIAPVVAPTIGGII
                     LNYSVWRMVFVILTIFGFVMVIGSLLKVPESLTVTNRESSSGLKTMFKNFKILLKTPR
                     FVLPMLIQGMTFVILFTYISASPFIIQKIYGMTAIQFSWMFAGIGITLIISSQLTGYL
                     VDFIDSQKLMRGMTMIQIIGVILVTIVLLNHWNFWILAIGFIILIAPVTGVATLGFTI
                     AMDESSSGRGSSSSLLGLVQFLFGGVASPLVGVKGEDNPIPYIIIIIATAVILIILQI
                     YNMKVFKTNR"
     gene            complement(13275..13403)
                     /locus_tag="PF788_001473"
     CDS             complement(13275..13403)
                     /locus_tag="PF788_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303737.1"
                     /translation="MEYKQHPFKVFTISVNYFEGIVFCGKIYEVLRFISFYTFYKL"
     gene            complement(13434..14816)
                     /locus_tag="PF788_001474"
     CDS             complement(13434..14816)
                     /locus_tag="PF788_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303738.1"
                     /translation="MKSCPKCGQQAQDDVQICTQCGHKFDSRQALYRKSTDEDIQTNN
                     IKMRKMVPWAIGFFILILIIILFFLLRNFNSPEAQTKILVNAIENNDKQKVATLLSTK
                     DNKVDSEEAKVYINYIKDEVGLKQFVSDLKNTVHKLNKSKTSVASYIQTRSGQNILRV
                     SKNGTRYIFFDNMSFTAPTKQPIVKPKEKTKYEFKSGGKKKMVIAEANKVTPIGNFIP
                     GTYRIPAMKSTENGDFAGHLKFDFRQSNSETVDVTEDFEEANISVTLKGDTKLNDSSK
                     KVTINDHEMAFSSSKTYGPYPQNKDITISASGKAKDKTFTTQTKTIKASDLKYNTEIT
                     LNFDSEDIEDYVEKKEKEENSLKNKLIEFFAGYSLANNAAFNQSDFDFVSSYIKKGSS
                     FYDDVKKRVSKGSLMMISSPQIIDAEKHGDKITATVRLINENGKQVDKEYELEQGSQD
                     RLQLIKTSEK"
     gene            complement(15056..15511)
                     /locus_tag="PF788_001475"
     CDS             complement(15056..15511)
                     /locus_tag="PF788_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017804647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDG6303739.1"
                     /translation="MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVL
                     GMLNKEPLTISEITQRQGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDK
                     GRAYLKERNAIMTDIAQDITNDLNSEDIENVRQVLEVINHRIKTYSNHK"
     gene            15706..16674
                     /locus_tag="PF788_001476"
     CDS             15706..16674
                     /locus_tag="PF788_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDG6303740.1"
                     /translation="MLLNLLLIFILIVICPLIFNYTLTLNLTCYILVVISIFLSLIYS
                     IMTYTFPWSMFVTFIIISIIMLFKHRYLFSHTSSRLFIKKLLSFSYKFVLYTSALLFI
                     STIQSPIVKGLSMWLAILCLSLLLTFICYLVWTVSYRHRSYNKEVDIIIVLGAGIFTE
                     FVTPMLAARLDRALDIYQQQASATKIIVSGGQGPDEPISEALAMQRYLIAHGVDKTDI
                     LMESHSINTYTNFLYSKQIINNLYHEAVKIVCVTSQFHVLRALRLAQKLGLSIDGVGS
                     HTPYHFFLHVLIKDYLGVMYQYRLLLTLYCSSSWFICLYAAFIYNS"
BASE COUNT         5584 a         2991 c         2423 g         6069 t
ORIGIN      
        1 catgccttta ttgccttatt tgtaaaaaaa tatcccagca tcattgtgcc gagatattta
       61 tatcattaca attgattatc tgtttcttcc ggtgttttcg gtgtttcaga tgtacacgct
      121 ttttccggtg tttcagatgt cactggttga tttttaattg tagacgggta ttttgggctt
      181 tcgccatatt tatttgccgg cttactgtca aagcatagga atactatcat aacaattgtt
      241 aggcctaaat aaacaaaata aagaagtact aacaaaatat taagacccat cggcattaat
      301 gtaaaatcac tgtcataata actatcgata atctgtaata ctatataaaa tataatactg
      361 aatactgtca taatcattgg aaataacatt gttcttgata tatcgtgaaa tcttcgaacg
      421 cacaacgcta aatttggaat aaacgttgcc aaactataga caaaagtata cacagatgta
      481 aggataatca tcaatatact cataactatt aatgtttcgt tatccgccgc tatagaaata
      541 aagaatagaa ataggtttat tattagcaca cacacagctg gaaccataag tatcaaatgc
      601 catagtgcca tataccaata ttcactacgt cttgatctcc ccttaaaatt tacataattt
      661 ttccaaaata aaacgaatga tttcataaaa cctacttgag gtaattgttc cattgtaatc
      721 tccctttcgt taatcatatt tatattttta attattgtta ccgttataat ttacaagatt
      781 cattatcaag ccacttcatt tcaatcgtca atcactttgg aaaatgaact ttatatttca
      841 tcactagtaa aatgaaaacc cgctacaagt acacatctat atggagactc atttgaaagt
      901 caacgcttcg ttaactatac taaaaatatg tcatactgca atgttcacgt ttaaaagagt
      961 ctcaatctat gcaaataaaa tattccataa caaagtatat actttacatt tttataattc
     1021 ttaacaatac tattttatca aacatttacc acaataaaaa tatctttttc atttttattt
     1081 aaattaatca tataattgcg aggagaatat tatggatttc gttaataatg atacaagaca
     1141 aattgctaaa aacttattag gtgtcaaagt gatttatcag gataccactc aaacgtatac
     1201 aggctacatc gtggaaacgg aagcttactt aggtttgaat gatcgtgcgg ctcatggcta
     1261 tggcggtaaa ataacaccta aagtcacgtc attatataaa cgtggtggta caatttatgc
     1321 acatgtcatg catacgcatt tactcattaa ttttgtaaca aaatctgaag gtatacctga
     1381 aggcgtactt atccgcgcaa ttgaaccaga agaaggttta tccgctatgt tccgtaacag
     1441 aggtaagaaa ggctacgagg taacgaatgg cccaggaaaa tggactaagg catttaacat
     1501 tccacgggct atcgatggcg ctacgttaaa tgactgtaga ttgtctattg atactaagaa
     1561 tcgtaaatat cctaaagata ttattgctag tccacgaatc ggtattccaa ataaaggtga
     1621 ttggacacat aaatctttac gttacacagt gaaaggtaat ccatttgtgt ctcgcatgcg
     1681 taaatcagat tgtatgtttc ccgaagatac ttggaaataa atgccatctt tcattgatta
     1741 ctatcatgaa aatgaaatct atctccttat aagtcaatca atcgtgccgt caacatgcgg
     1801 atgggttgat tgtttttctt tgtatccatc atattttttg attcatctcc tcttattgaa
     1861 cttgttctta attataaaat ataacaatag aattatttat aattattaaa tttagatgca
     1921 ttaatattat tgatattatt ttcaaaaact agaaatattg atttgttgca tgtataatgt
     1981 taaaagcgcc cttttataac gcttacatat aaaagcttat ttagggagag ggatattcaa
     2041 caagggggat ttgaaaatga tagaacttaa tgcaattaca acattatgtt tagcttgtat
     2101 cctttattta cttggtaagg ctatcgttaa tcacgttaat tttttaaaac gtatttgtat
     2161 accagcacca gtgattggcg gcttaatctt tgctatttta gttgcggctt tggattcatt
     2221 tggcatggtt aagattaaat tagatgcttc attcattcaa gatttcttca tgttagcatt
     2281 ctttacgaca atcggtcttg gtgcatcatt gaaattattt aaattaggtg gcaaagtctt
     2341 gctattatac tttatgtttt gtgctatcat ttcagtcatt caaaacatag ttggtgtatc
     2401 actagcaaaa gtattaaata ttaaaccttt gttaggatta acagcaggtt ccatgtctat
     2461 ggaaggcggt catggtaatg ctgctgctta tggtaagaca attcaagatt taggtattga
     2521 ttcggcactg acagcggctc ttgcagctgc aactttaggt cttgtatttg gagggcttat
     2581 cggtggtcca gttgtaaaat ttttaatcaa acgttataac ttaaagcctc aacatagtga
     2641 cgatacattt aaagattata gccaagtagc atataacgaa catttacata gtaaatttaa
     2701 tgccactgaa gtattcttca ttcaatttac aatcgttgta ttctgtatgg cagttggaag
     2761 ttatttcagt catttgttta cagctcaaac agggattaat gttccaattt acgttggctc
     2821 attatttgta gctgttattg tccgaaatat ctctgaaagt tttaatttta atattgtaga
     2881 tttaaaaatt actaatcaaa ttggcgatgt cgcattaggt attttcttat ctcttgcgct
     2941 aatgagcatt caattaatcg aaatttataa acttgctata cctcttatta ttatcgtttt
     3001 agttcaagtt gtcgttatga ttttatttgc tgttttaatt ttatttagag gtttaggaaa
     3061 agattatgat gctgcagtaa tggtaggtgg ttttatcggt catgggcttg gtgcaacgcc
     3121 aaatgccatg gcaaatttag atgttattac taaaaaatat ggaaactcac ctaaagcata
     3181 tttagttgta cctattgttg gtgcattctt aatcgattta attggtgtta tagtcattat
     3241 gggattcata caatggttta gttaaacacc aaactcataa ataaaagagg aggccttcgc
     3301 ctcctctttt atttatcctc gatgtatatt caagttacgt tgttctatcc atgacaatat
     3361 ttccggacta aatacgattt gtttttgtgt taagtcgtca atatttttag catctaacat
     3421 cgtcattatt gatttcatgt gttcaataaa tgattctaca taagctactg tatgtgcaat
     3481 gccattattt tcaacttgat ttaaaaacgg acgtgacata ccagttgcct ttgcaccaag
     3541 tgctaaactt ttaattgcat cgagtggtgt acgtaaacca ccactcgcga aaactgaaat
     3601 ttcgctttga taagccgttg tttcaagtaa tgactcaact gtagactgtc cccatgatga
     3661 taagtaatcc atatctttat ttgcacgacg ttcattttca atatctacaa agttagtacc
     3721 acctttgcca ctaacatcga catacttgac gcctatttgt tgtaagtcat gcattaattc
     3781 tttgctcata ccaaatccaa cttcttttat aatgactgga acagacactc gtgatacaat
     3841 cgacgctata ttatctaacc aagtcacaaa ttcacgattc ccttcaggca taactaattc
     3901 ttgaggagaa ttaacatgga tttgtaacgc ttgtgcctca agtaattcaa ctgcttccaa
     3961 agccttttct actggtacgt ccgcaccaac attgctaaaa atcatgcctt caggattcat
     4021 ttttcgcgca atcgtaaacg tctcagccat gcgtggattt ctcaatgccg catgtgttga
     4081 tccaactgcc atcgctaagc cagtttctct tgcaactaca gctagctttt cattgatgtt
     4141 tttcgtccac tcgctaccac ccgtcattgc attaatataa accggatatg ccatcgttaa
     4201 gtcaggcgtc tgtgatgtca aatcgatatc atttacatta attgatggga tagaatgatg
     4261 cacaaaacgc atcttatcaa aatctgaatg cattgcgtca gattgggcca ttgctatttc
     4321 aacatgttca ttttttctct gttctctttg aaaatcactc atgattaaac ctaccttttc
     4381 gtcatttcta atttaaaacc attttttacg tctgaaaaag atgattaata cgacagctat
     4441 aacaaacatt acagctaagc aaatataata tccataatgt aaatgtaatg ccggcatatt
     4501 tacaaagttc ataccataaa tcccagctat gaatgttaac ggtgaaaata taactgatac
     4561 taatgtcagt acttgcataa tactattcat tctaaatgac gtgtatgact caaaattttc
     4621 tcgtatttcg tttgtcattt cttgagcagt acgaatgata ttacgttgct taatcaagtg
     4681 gtcatcgata tgttgaatgt atagcgaatg tttattatct ataatcaaat caccattttg
     4741 tttcattgta tcaattagct cttgcatagg aaacagtaca cgttttactt taatcaaatc
     4801 cgaacgtaac ttaaagacac tatccatgac cattttatta aagcgatcat ctacatggcg
     4861 gtcttcaaaa tgataaacac tatcttcaag tgcatataca aagttgaaat atttatcaac
     4921 catcatatct aaaattaata tgacgacatc tgcacaatct aattctgcat ctaatgtatt
     4981 catatactta tagactactt tatttaatga ttccaacgtt tgatgatgat atgttactaa
     5041 tacattgtct tgtataaaaa tatttagtgc tattggtgaa tagtttgacc ccataatact
     5101 atggaatact aagtattgat aatctttata agatttatat ttagctcgtg gcataccgtt
     5161 aattgcatca tccacttcta aatcattaaa attaaaatgt gctttaaacc attcattttc
     5221 ttgttcattc ggttcatcaa aatcatacca aacaatagtc gcatcttttg gtatctcttt
     5281 gatatcatca actactttaa acggttcata tgtagtttga taccgtatct ttaaagccat
     5341 cgatactccc cctaaataac gaattctcta ttattttatc atgaattaaa taacgtgtat
     5401 gtcttaattt attttagtat gatagtcact aaggagatgg ttattatcaa acaacttttt
     5461 acacatactc aaaccgtaac atctgaattc attgaccata acaatcatat gcatgatgca
     5521 aattataata tcatttttag tgacgtcgtg aatcgtttta attacagcca cggtctttct
     5581 ttaaaagaac gcgaaaattt agcatatacg ctatttacac tagaagaaca tacgacatac
     5641 ctctcagaat tgtctcttgg cgatgtattt actgttactt tatatattta tgattacgat
     5701 tataagcggt tgcatttatt tttaacatta actaaagaag atggtacact agcatcaaca
     5761 aatgaagtaa tgatgatggg aattaatcag cacacacgtc gttctgatgc ttttcctgaa
     5821 tcattttcaa cacaaatagc acactattat aaaaatcaat caactatcac ttggcctgaa
     5881 caattaggac ataaaatagc aattccacac aaaggagcat taaaatgaca gatgcattac
     5941 aacaaaagat tcatatcgaa ttactagatt tattagatga tgttaagttt gaattaacag
     6001 aattaaatgc acaaaaaggg ttatacatta acggaccagc aaatcagcta cttaagcgtg
     6061 gcgtgcatat ggcttatgtt caaggacaaa agcaagccat cgataatatt atgactattg
     6121 tggaacaaca gcttgaagat caacatttcc tagaacatta tgataaattt caaaatgagg
     6181 ttgctcatcg caattatgat aaaacagcta actttgcaga acttagtgat attccacgtc
     6241 aattcgataa ttttttagat caattttatc aaattaaagg gcaatacttt atcatcacac
     6301 atatcaatac acttattggt gattttcact cagaagctca ttaacaatta gtctatataa
     6361 cccttgctat attttcaaaa acaaaaccca attacgtttt catgtcaaat atcatcttgc
     6421 atgaaatcgt aactgggtca tttatatgtt attagttatt ttgtgttaca tcctcatcta
     6481 tcgatttggc aatttgttta atagctttat gtgattgtct aattggataa attggaaaat
     6541 catgtaccat cttaggataa tcataaaact caatgtattg atgatgttgc aacatcattt
     6601 gttcaaatag cttcatatca ggatgtgtca tttcacgtcc accaccaaac atataaactg
     6661 gtggcaatcc ttctattgtg ccattaattg gcgatatgcg cttatctgtt aatggtaggc
     6721 cattcgccca ttttttcata atctcattga caccaaactg acttagaacc gcatcttgtt
     6781 cgattaaggc gtccgaaata tctttattag atagtgttgc atctaaaatt ggtgagatta
     6841 aatacaattt attcggtaat ggctgttgat tatctaaaag agattgtaca aaggataatg
     6901 ccagtgcacc acctgaacca tcacccatga ctacgacatt ttgatgtcct acttcagata
     6961 ctaattgatc ataaacacgt tgtatcgctt ggaaagtatc gtcaatatga aactctggtg
     7021 tctttggata gataggcagt acaacctcat ataatgtact taaagtgatt ttatccaaca
     7081 atctccaatg gaacggtgat ggttgtagtg cattgaatcc accgtgaata tataaaattt
     7141 tcttatcaat ttgatgtctg aaattaaagc gaaagacttg catatcatct aatgacaatt
     7201 tttctaaatt tgctttaaca tttaatgttg aaggctgctt atgttttttt ctattttcaa
     7261 tttctctttt ataaaaaaat ctttcaacat cttgatcatt tttaaacata atcgagcgat
     7321 tgtgaagcaa atatttattg acaacgctat tcataacacg gtttctaatc aatgtcttaa
     7381 cctaccttta tatattttat gtatccaatg attgtctatc ccctacattc tttgccaaaa
     7441 aaagtatata atgtagaaga tattttcttt ttcactttca aatttaagac tacaattgaa
     7501 cagtgatttt tcatcattat aacagacaac tagacatatt gataagtaaa gaaaagaact
     7561 ttatacggag gtaccttgca tgacaaatcc aaatcaacga ttagaaccat ttgatgagac
     7621 atttcaacaa ccgaatattc atcgtggtaa gcgatatggt aagaaaaaac gttcattggt
     7681 aagcatgatt attcaaatca ttgttgttat attaaccgca atcgctggat acagcatgtg
     7741 gaaacaaccc atttttaata ttgtcttcac caaagaatct gtagattttg atggcattaa
     7801 aaattttaac gagacaattg gaaaaatgca tcaattaaat attaatttgg gtaatatcaa
     7861 tgatttacaa caaggaatcg atcgcttaat tttagtcttt aacggtttct ttattttatg
     7921 tatcgttagc ctagtcataa caatactgac aattgtattt aatcgcacag ttctaaaagt
     7981 agtaaatatt ttagtgttaa caattatgtt agtcattaca ttgtatttca gttatattat
     8041 taaagcactc gcacaagaaa ttgcagatgt tttcaaaaaa tattatttaa atgtaccacc
     8101 agatcaagtg attacagaag ctgacgctat tcataacggc atcattttac ttggctgtag
     8161 catcggttta cttgttataa gcttattctt ccgtaatcgc atgcctcgtt taaaataatg
     8221 ttatatagta gggattggga cagaaatgtt attttcacaa aattcatttc gttgacccac
     8281 ttcctgcttt ttctttatta atgacctact acgtcaatgc caaattttaa tataattcct
     8341 ctaacattct ataaatcaac aaataaaaaa agtatcgata accatatttg gcaccgatac
     8401 tttaaaaatc atgtccccac aacataattt ttgattagtc acacttcaat taatttattt
     8461 tatttattca tgattgatac tattatctgc atctaacttt tgagctgtag cttttgcttt
     8521 tttattactt tgtaaaaata aacataaaat taaggcgatg atgctaaata tcgttgcaac
     8581 tataaatgca tcattaatac cttcaaccgt tgctagttta tttacaaatt gtagtaacac
     8641 tttcattgcg ccttcttgtc cgccatattg tgatgctaat tcatgcatat gatcttgtac
     8701 aacaggattc gttttatcta actcttcccc aaaagctgat aagtgttgtg tagtttgtgt
     8761 tgtcattaca gtaactaaga ttgctgtacc tatagagcct gctaattgac gcatcgtatt
     8821 taagaaagca ttaccatgag aggcaagtcg tcccggtaac gcattaatag ctgcagttac
     8881 cattggcatc attataaatg ccataccaaa tgaacgaagt acatagatac ccatgattgt
     8941 catatatggt gtatccatat ttaatttagt taattcccat gttgcataag tcattacagc
     9001 aataccaaag atagctaatg gttttaaacc aatagtatct aacaatttac ctgcaaatgg
     9061 tcctagtaga cccataatta gagaaccagg taataataac aatccggaat ctaatgctga
     9121 gaatccgcgt aaattttgta aataaatcgg taataaaatc ataccaccat ataaacttaa
     9181 cattacaacc atattaataa ttgttgttaa tgtaaatgtt gggaatttca atacttctaa
     9241 attcaacatt ggtgatttca ttcttaattc tctaataacg aatagaataa taaagataat
     9301 accaatcgca aacattgttt ctatctctac tgaaccccaa cctttgttgc cagcttctga
     9361 gaaaccatat aacaaagcac caaaaccaat cgtactaaaa atgatacctg ggatatcagc
     9421 tttagggttt gttgtatatt gatataactt aaaccataca aaaccaatta aaatagcgat
     9481 aatcccgata atgaacatac cgtaaaacat cacattccaa tggtaatttt gtacaatata
     9541 acctgataat gttggaccaa ttgcaggtgc taaaatcatt gcgataccca ttgtacccat
     9601 ggcagcacca cgtttttcag gtggataaat tgtaataata acaattgaac ctaatggcat
     9661 tagtacacct gcaccaatgg cttgtaatac acgtccaacc atcatgattg ggaaattcat
     9721 tgaaatcgca cagattaatg aaccaattgt aaagagtact aacgcaacta aaaataattt
     9781 tcgatatgaa tatttattaa atagatacgc cgtaattggt attaaaatac cgtttactaa
     9841 catgaatccc gtcatcaacc attgccctgt tgacgcagaa atattaaatt ccgtattaat
     9901 ttttggtaaa gcaacattta ataatgtttg gtttaaaatc gcaataaaca taccgaataa
     9961 taatgccgct aatattttac cgcgtgaaac accttcacca aaaataaagt ttttatgttc
    10021 tttttttatt ttttcattca ctttatattc ttctgattca ggatttttag cagcaactgc
    10081 ttcctcatcc ttattattag tgaatgcttc ttgatctttc tcagacccct ttgtgtaacc
    10141 atttagacta acttggctat gatcatcttg attgtcaaca cgcaactctt catgcgtcat
    10201 acgttgtgtc gattgatcag ttgttttgtc taaatcacta gctttaaatt tagattgatt
    10261 tgattgacgt gtcgtaaatt gttgttcctt ttgttggcgt ttgccttttt ttcttgatct
    10321 tattaaaaat aaattgataa ccccaacaat aatgagcgct aaaataatgt agctaataat
    10381 gaaggtcgta gtcatttaat gaccccctta atttttatgg atttttactt cagcgttcat
    10441 tccaggaaca acttgtttag acggttctga ttctagagtg attttaacag gtattacttg
    10501 agaaacttta gtgtagttac catcactatt tgatgatggc attaatgaaa agcttgcagc
    10561 agttgctttt ccaatactat caactttacc tttaatagaa gctttttgac cgtcaatagt
    10621 cacatcaaca tctttaccta cttcaacatc tttaatatct ttttcgtcaa tatttgctgt
    10681 tacatataaa tcatctaaat tgtatgcata agcgattggg ttaccagctt gcaccattga
    10741 accttccata ccatctaatt tggcaattgt acctttttga ggcattttaa gatccatatc
    10801 tttcgtttcg ccatcttgac cttgtacagt aacaattgct actttgtcac ctttatcgag
    10861 tttgtcacct tgtttaacat taagtgattt aatttgtcca gatgcaggac ttgctatttt
    10921 aatttgatcg ccatttactt ttgcattatc agttgttaca tagcttgttg ttttattcca
    10981 aaaataaaag ccagcaatcc caattgctaa cagtacaaca accgtaatga cattaattaa
    11041 tatcatcttt ttcatgaaac atttcctcct atttgctttt aaaattcact ttatttatta
    11101 tagagacatg ataactaaaa aaacaccaac aatttttata agagtgttgg ttaaaattca
    11161 caaaggtgta acaatatgaa acgacaagcc aaaatagaaa ttcaaaacgc acttgttgat
    11221 ttgatggctg aatatccttt tcaagaaata tccactaaaa tgatttgcgc gtattgtaat
    11281 attaatcgtt ctacttttta tgattattac aaagataaat ttgatttatt ggataccatc
    11341 aactcaaagc ataaggaaaa attccaattt cttctaagcg cgctacatca taatttcgaa
    11401 aatattaaac aggataagct taaactttat aaattcttca ttattattgc taagtatatc
    11461 aagcacaatg agcagttttt caaagacatt ttagttacct atccaatgaa aacattattc
    11521 atagactata taaatttagc gagagattac tatcaacaaa ttatgaatga ctatagtact
    11581 acagtaacca ataaacagct ttatgttaca tatatcatag gcggtcaagc tggggtgttt
    11641 attaattggc tttcgaatgg ttgtaatgaa tcacctgaag aagttgctga cattttattg
    11701 gctaatacga ttaaacttca aaactaataa tacggtttca ttctaataaa gaaatgctat
    11761 aaaacaacta gataaagtta aaccaaatgg atagataata gtacatatgt aacggtgcta
    11821 tcaatataaa aatgccgaga tttccacata ataatctcgg catttttatt tttgatgcta
    11881 aattcatagg tctatgaata gctcaagttt tgttttttaa tttttcaatt caatataata
    11941 gaagaaacta tgtttatcat cgatttgttt taaatacctt catattataa atctgtaaaa
    12001 taattaatat aactgctgta gctataataa taattatgta aggtatagga ttatcttcac
    12061 cttttacccc cactaatggc gatgcaacac caccaaataa aaactgtact aaacctaata
    12121 aacttgatga actccctcta ccactactac tttcatccat agctattgta aaaccaagtg
    12181 tcgcaacacc tgtcactggt gctattaaaa tgataaatcc tatcgctaaa atccaaaagt
    12241 tccaatgatt aagcaataca atcgtcacta aaattacacc gataatctga atcatcgtca
    12301 tgcctctcat caatttttgt gagtctataa aatcaacaag gtacccagta agttgacttg
    12361 atataatgag cgtaatacca attcctgcaa acatccaact aaattgtatt gcagtcatgc
    12421 cataaatttt ttgaataata aacggagacg cagaaatata agtaaataat attacaaatg
    12481 tcataccttg aatgagcatt ggtaatacaa aacgtggcgt cttcaataat attttgaagt
    12541 ttttaaacat tgtctttaat ccactacttg actcacgatt tgtcactgtt aatgattcag
    12601 gtacttttaa taaagaacct atgaccatga cgaagccaaa gatagtcaga atgacaaaga
    12661 ccatacgcca gacagaataa tttaaaatta tgccccctat tgttggcgca acaactggtg
    12721 caataccatt aacaagcatc aataatgcca taaacttagt tagttcatta ccactataca
    12781 tatcacttgc tatagctctt gaaataactg ctgctgcgcc acctgtcact ccttgaagaa
    12841 atcttaatgc aaccatcagc caaatattat gtacaaaaac aatacctaaa cttgctaatg
    12901 taaaaataat catagctata ataagcggct ttctgcgccc agttgaatct gaaattggac
    12961 cagcaaacaa attaccaaac gctaaaccaa tcataaacat cgataatgtt aattgtgcgt
    13021 tagacgtcgt tgtttgaaaa tcatgtctaa tatctggtaa tccaggcaaa aacatatcta
    13081 tcgataatgc tccaatggcc gtcaaagatc ctaaaataat aataaatatc ggtgaacgct
    13141 tgttaaaatg cgttaaatca ttcatatgac tatctccttt atataatgat tagtttataa
    13201 ctatcacgaa cagaaactaa atttaaatat gctcttttat atattagcat tagtcacaag
    13261 tttcatgaac atcattacaa cttataaaag gtataaaatg atataaacct cagcacttca
    13321 taaatttttc cacaaaaaac aatcccttca aagtaattca cactaattgt aaatactttg
    13381 aaaggatgtt gtttgtattc catgacacat gcatcttatt taagttttat actctatttt
    13441 tctgatgtct tgattaattg caagcggtct tgcgagcctt gttcaagctc atattcttta
    13501 tctacttgct taccgttttc atttattaat cttacggttg cggtaatctt atcaccatgt
    13561 ttttcagcat ctataatttg tggtgaacta atcatcatta aacttccttt agatacacgc
    13621 ttctttacat catcataaaa agatgatcct ttttttatat atgatgatac aaaatcaaaa
    13681 tccgactgat taaacgcagc attattcgct aaagaatatc cagcaaagaa ttctatcaat
    13741 ttgttcttca agctgttttc ttctttttct ttcttttcaa catagtcttc gatatcttca
    13801 ctgtcaaaat tcaaagttat ctctgtattg tattttaaat cgctagcttt aatcgtcttc
    13861 gtctgtgttg taaatgtttt atctttcgct ttacctgaag ctgaaatggt aatatcttta
    13921 ttttgtggat atggaccata cgttttggaa cttgaaaatg ccatttcatg gtcatttata
    13981 gttacttttt tagaactatc atttaatttt gtatcgcctt ttaaagttac agatatattt
    14041 gcttcttcaa aatcttcagt aacatctacc gtttcagaat tactttgtct aaaatcaaat
    14101 tttaaatggc ctgcaaaatc accgttctca gttgatttca tagctggaat tctatatgtc
    14161 cccggtataa aattacctat tggcgtcact ttatttgctt cagctataac catctttttc
    14221 ttaccaccag atttaaactc atattttgtt ttttctttcg gtttaacaat tggttgcttg
    14281 gtaggtgcag taaagctcat attatcgaaa aagatataac gtgtgccatt tttacttaca
    14341 cgtaatatat tttgaccaga tctggtttga atataagaag ctacgctggt cttactctta
    14401 ttcaatttat gtaccgtatt tttaaggtcg ctgacaaatt gcttaagccc aacttcatct
    14461 ttgatatagt taatgtatac ttttgcttct tcagaatcta ctttattatc tttagtactt
    14521 aataatgttg ctactttttg tttatcatta ttctcaatcg cattcactaa tattttagtt
    14581 tgcgcttcag gtgaattgaa gtttcttagt aaaaagaaca atataataat taagattaaa
    14641 atgaaaaaac caattgccca aggcaccatt tttctcatct tgatgttatt agtttgtata
    14701 tcttcatcgg ttgactttct atataatgct tgacgactat caaatttatg tccacattgt
    14761 gtacatatct gtacatcatc ttgtgcttgt tgtccgcact tcgggcaaga tttcatactt
    14821 tcacctcaat tctgttcctc ttcaattgtt atatgtatat cacaaaaatt atttcattat
    14881 tttaccatta ttattttaca aatattatcc caagaataca attcaagaaa tgattaactt
    14941 tactttagaa ttgtacctta ttacattatt tatgaaagta ctctctcaat tataactaaa
    15001 aagaaggtgt tcaatacata catatttagt cttatatttg aacaccttca aaaacctatt
    15061 tatgattgct atatgtttta atgcgatgat tgatgacttc taatacttgc cttacatttt
    15121 caatatcttc agaatttaaa tcattagtaa tatcttgcgc aatatctgtc ataatcgcat
    15181 tacgttcttt caaatatgct ctacctttgt cagttaaggt tatgaatttc aaacgttgat
    15241 caatatttaa atttggttta tctaacttaa ctaatttagc atcgattaac tttttaattc
    15301 gtcggcttac tgcggcctta tttacacctt gtctttgcgt gatttcacta attgtcaaag
    15361 gttctttatt taacatacct aatacgttag actgctctaa tgaaatttca tattcatttt
    15421 gtaaatcttt caacattttt gcagttaatg cgttaacgtt atttataaac tgctctaaaa
    15481 attgaatatg gtcttgtaaa tgttttacca taattatttc tccctaatta ctatttttat
    15541 aaagtatcct cagcaatcat tgtatcgcac atctaaaaaa cacaaaaata ttgacccata
    15601 tataatataa caaattaaga tttacatgtt gctgctttct ccttgcttta ataaattaaa
    15661 tcatctacat ttatatttaa tatttattat aagcgaggtg tcagtatgtt attgaattta
    15721 ttattaatat ttatacttat cgttatttgt ccgttaattt tcaactatac tctgacgtta
    15781 aatttaacat gctacatctt agttgtcata tcgatatttt tgtcactcat ctatagcatc
    15841 atgacctata ctttcccttg gtctatgttt gtaacattta taataatcag tattatcatg
    15901 ctattcaaac atagatattt attttctcat acttctagtc gcttatttat taaaaaatta
    15961 ttatcttttt catataaatt tgtactctac acatcagcac ttctatttat aagtacgatt
    16021 cagtcaccta ttgtgaaagg tttgtctatg tggttagcta tattatgtct ttccctgtta
    16081 ctaaccttta tttgttatct cgtttggaca gtatcatata gacatagatc atacaacaaa
    16141 gaagttgata tcataattgt gttaggtgct ggtattttta ccgaatttgt cacaccaatg
    16201 cttgcagcgc gtttagatcg tgcacttgat atctatcaac aacaagcatc agcaacaaag
    16261 atcattgtat ctggcggaca aggaccagac gaaccaattt ctgaagcttt agctatgcaa
    16321 cgttatttga ttgcacatgg tgttgataaa acagatatac taatggaatc tcactctata
    16381 aatacataca caaacttttt atattctaaa caaatcatca acaatttgta tcatgaagca
    16441 gttaaaattg tttgtgtaac aagtcagttt catgtattgc gcgccttacg actagcccaa
    16501 aaattaggtt tatctatcga tggtgtcgga agtcatacac catatcactt tttcttacat
    16561 gtgctcatca aagattatct aggcgtaatg tatcagtata gattgttatt aacgttatat
    16621 tgttcaagta gttggtttat atgtctttac gccgctttta tttataatag ttaatccaca
    16681 aacaaactat tattataggt tgtttctaat attgcgtcaa actatcttta aatattcgtt
    16741 aatccttgat tagacaattg ttatattgaa aataaataaa ctaaagagtc tgggacatta
    16801 atccctaaaa aaaacagcag taagataatt ttcaattaga aaatatctta ctgctgttct
    16861 ctatttatac aatacttcgt attgaatggc ttcgctatgc ccatctggca cattactgta
    16921 aaattctata aatagaattt ttgatgacgg gtcccttcct agggtgccgt ctcagccacc
    16981 ccaaccggca cattgttgta agctgactat atgtcagctt ctgtgttggg gcccctgtct
    17041 tcgactggca ctgctccctc aggagtc
//
LOCUS       DAMQWL010000050        16838 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.050, whole genome shotgun sequence.
ACCESSION   DAMQWL010000050 DAMQWL010000000
VERSION     DAMQWL010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 16838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16838
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.050"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..538
                     /locus_tag="PF788_001477"
     CDS             <1..538
                     /locus_tag="PF788_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tandem-type lipoprotein"
                     /protein_id="HDG6303741.1"
                     /translation="VQPKGERMKSKGMVLYMNRNTKTTTGKYIVSETLHDEDGRPKSK
                     DKEYPVKMVDNKIIPTKGIKDENIKKEIENFKFFAQYGSFKDLSKYKDGDISYNPEVP
                     SYSAKYQLTNDDYNVKQLRKRYKIPTNKAPKLLLKGSGDLKGSSVGYKDIEFTFVEKK
                     GENTFFTDSLHLEPSEDK"
     gene            632..2869
                     /locus_tag="PF788_001478"
     CDS             632..2869
                     /locus_tag="PF788_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020808042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDG6303742.1"
                     /translation="MQRDYLIRVETESMSDFKRLNSLMIGFVIKGEAHIYDENNMTQC
                     NSGDIFIINHRDLYRFQLQQDGIICYIQFQMKYLADKFDDVHCLYFHLTDATTTKNIH
                     QLRNIMARLVSTHIRHNELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQV
                     CDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFHHFLNTTRIEHAKLDLTY
                     TDETITDIALQNGFSSAASFARTFKHFTHQTPKQYRGDRPAITENQQSAQHDYHDREL
                     ILLLNDYIEEMNHFIEDIEKMNYKEIAFQPTNHQLNQFNHIIQVGYLRNLLNTQYQSQ
                     LLTCHHDFQVNEVLAYDVIPYIMKKLNAPFTYDAEISNIFYDIDLCLDFLLDHNFSLT
                     MHLDQYDSRDYIDAFKIFIHHVALHVSHRKDLKFNLYVTTLHTSLIEMIDYFKALFPN
                     GGLYIHLDQATERHLPLLKRLEPHIDHFVFDANSNDAVDFNKMNDDEFKTASQMIINK
                     TNYLIDLMHRHRLKRPLILLNWNTLTGDTFITNGEYFRGGIIIEQLLKLSSKVEGIGY
                     WLNYDLHVSHCKNERDYMNSIELFHQYNGKRPVYFTALLFNKLTSNILYSDDTCIVTG
                     TDSNFQILLYDAKHFNPYLALDNQMNMRATEMIHLNINALEEGMYKIKHFTLDKENGA
                     LFNLWRKHHTIHGMDKDSIDYVNRMSFPKLEVYDIDITDTLALNIKMITNGIHLIEVK
                     RYPSS"
     gene            3020..4198
                     /locus_tag="PF788_001479"
     CDS             3020..4198
                     /locus_tag="PF788_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDG6303743.1"
                     /translation="MNQQLIETLKSKEGKMIEIRRYLHQHPELSFHEDETAKYIAEFY
                     KGKDVEVETNVGPRGIKVTIDSGKPGKTLAIRADFDALPITEDTGLSFASQNKGVMHA
                     CGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGVLDGVDHV
                     LGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTA
                     LQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIKR
                     LSKGLEDMYGVTCTLEYNDDYPALYNDPEFTEYVAKTLKEANLDFGVEMCEPQPPSED
                     FAYYAKERPSAFIYTGAAVENGEIYPHHHPKFNISEKSLLISAEAVGTVVLDYLKGDN
                     "
     gene            4200..5588
                     /locus_tag="PF788_001480"
     CDS             4200..5588
                     /locus_tag="PF788_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6303744.1"
                     /translation="MNETYRGGNKLILGIVLGVITFWLFAQSLVNVVPNLQQSFGTDM
                     GTISIAVSLTALFSGMFVVGAGGLADKIGRVKMTNIGLLLSIIGSALIIITNLPALLI
                     LGRVIQGVSAACIMPSTLAIMKTYYQGAERQRALSYWSIGSWGGSGICSLFGGAVATT
                     MGWRWIFIFSIIVAVLSMLLIKGTPETKSEITNTHKFDVAGLIVLVVMLLSLNVVITK
                     GAALGYTSLWFFGLIAIVIVAFFIFLNVEKKVDNPLIDFKLFENKPYTGATISNFLLN
                     GVAGTLIVANTFVQQGLGYTALQAGYLSITYLIMVLLMIRVGEKLLQKMGSKRPMLLG
                     TFIVVIGIALISLVFLPGIFYVISCVVGYLCFGLGLGIYATPSTDTAISNAPLDKVGV
                     ASGIYKMASSLGGAFGVAISGAVYAGAVAATSIHTGAMIALWVNVLMGIMAFIAILFA
                     IPNDDKRVKDAK"
     gene            complement(6081..7742)
                     /locus_tag="PF788_001481"
     CDS             complement(6081..7742)
                     /locus_tag="PF788_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HDG6303745.1"
                     /translation="MSVTEVIFSFLGGLGIFLYGLKIMGDGLQASAGDRLRDILNKFT
                     SNPVLGVIAGIVVTILIQSSSGTTVITIGLVTAGFMTLKQAIGVIMGANIGTTVTAFI
                     IGIDLGEYAMPILALGAFLIFFFKRSKINNIGRILFGFGSLFFGLEFMGDAVKPLASL
                     DGFKQLMLDMSTNPILAVIVGAGLTALVQSSSATIGILQEFYQQDLISLNAAIPVLLG
                     DNIGTTITAILASLAGSIAAKRAALVHVIFNLIGVIIFTIFLPVVIHLISLLQDLWHL
                     KPAMTIAVSHGIFNITNTLIQLPFVAGLAWIVTKLVPGKDIADDYKPQHLNKDLVYHA
                     PGVALQETQKELQNVGQIVLSMFEDIREITKDDKKLIKKLEQKHQAVETINDSIRNYL
                     VRISTKAITKADVERLAVMFDVNRSILKVAELTEEYVAQLKRQHDEDIRITEDAQRGM
                     DKLFNHVAESFDKAIDMLDVYDKTKKDEIVERSRESFNIEHKLRKGHIKRLNRGECTT
                     KGGLLYIDMIGVLERIGYHSRNVSEALVGLNDDVPTDEEIATTEI"
     gene            complement(8068..9843)
                     /locus_tag="PF788_001482"
     CDS             complement(8068..9843)
                     /locus_tag="PF788_001482"
                     /EC_number="4.2.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oleate hydratase"
                     /protein_id="HDG6303746.1"
                     /translation="MYYSYGNYEAFARPKKPENVENKSAYLIGSGLASLAAACFLIRD
                     GQMEGSKIHILEELPKAGGSLDGENMPLKGYVVRGGREMENHFECLWDLFRSIPSLEI
                     DNASVLDEFYWLNKEDPNYSRCRVIEKQGQRLVTDGDFTLTKTAIKEILDLCLTNEED
                     LDDVKITDVFSDDFFNSNFWIYWKTMFAFEPWHSAMEMRRYLMRFVHHISGLADFSAL
                     KFTKYNQYESLVLPMVEYLKSHGVQFEYDVKVEDIKIDVTTSQKIAREILIDRNGNAE
                     SIKLTINDLVFVTNGSITESSTYGDNDTPAPPTDELGGSWTLWKNLARQSPEFGNPDK
                     FCQNIPKKSWFVSATSTTNNKEIIDTIESICKRDPLAGKTVTGGIITINDSAWQMSFT
                     INRQQQFKDQPENEISTWIYALYSDVNGDYIKKPITECSGNEICQEWLYHLGVSTDKI
                     EDLAKHASNTIPVYMPYITSYFMTRAIGDRPLVVPHQSQNLAFIGNFAETERDTVFTT
                     EYSVRTAMEAVYQLLNIDRGIPEVINSPFDLRVLMDAIYELNDHQDLREITKDSKMQK
                     LALAGFLKKIKGTYIESLLKEHKLL"
     gene            complement(10017..10889)
                     /locus_tag="PF788_001483"
     CDS             complement(10017..10889)
                     /locus_tag="PF788_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDG6303747.1"
                     /translation="MNKLQDTTFLSYLFTIILWGSAFPMIKIALNDFSAESLSAFRLI
                     LATIILLPFVIIKKLPTPELRDIPVIFILGFCGFVIYHTALNFGEALISAGISGILVS
                     TTPIFSSALAYIFLKEHFSKWNWLSSLVAFIGISIISISKDDYTTINVLGVFIILLAS
                     FSESLYFTFQKKYIEKYGFIAFTLYTIMASSPFMLIFIPEIINDIHGATFTSIVSVLY
                     LAIFPTIIPYVLLAYIVKSVGVSDATMSLYLTPIVSLLLSYLLLDELPTTLAIIGGII
                     TLLGVSLSNFFQNT"
     gene            11002..12399
                     /locus_tag="PF788_001484"
     CDS             11002..12399
                     /locus_tag="PF788_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDG6303748.1"
                     /translation="MAKYKDIASDIRDKIITGDWFYGMKIPSHRQLAIQYNVNRVTII
                     KSIELLEAEGFIYTKVGSGTYVNDYLNEAHITNKWSEMMLWSSQQRSQYTVQLINKIE
                     TDDSYIHISKGELGISLMPHIQLKKAMSNTASHIEDLSFGYNNGYGYIKLRDIIVERM
                     SKQGINVGRENVMITSGALHAIQLLSIGFLGQDAIIISNTPSYIHSTNVFEQLNFRHI
                     DVPYNQINEIDTIIDRFINFKNKAIYIEPRFNNPTGRSLTNEQKKNIITYSERHNIPI
                     IEDDIFRDIFFSDPTPSIKTYDKLGKVIHISSFSKTIAPAIRIGWIVASEKIIEQLAD
                     VRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNILNNLFKDIAHW
                     EVPSGGYFVWLVFKIDIDIKYLFYELLSKEKILINPGYIYGSKEKSIRLSFAFESNEN
                     IKHALYKIYTYVKKV"
     gene            12589..13062
                     /locus_tag="PF788_001485"
     CDS             12589..13062
                     /locus_tag="PF788_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HDG6303749.1"
                     /translation="MSKIRSFTILSLLIYLAMMCYTVVTYPKLPTKVPIHYNLAGDAD
                     NFADKWVLLLINSAFIVIWLIFFIAGRYYERFAKWSHYNHTPREIRAIKLFLSTLNLE
                     IMSYMSIFTVLEIWQIQHHHQFNLLWFNMIFIIIIGLTLVIFCLLPTIHKMRDSQ"
     gene            13324..14916
                     /locus_tag="PF788_001486"
     CDS             13324..14916
                     /locus_tag="PF788_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDG6303750.1"
                     /translation="MTLLTVNPFDNVGLSALVAAVPIILFLLCLTVFKMKGIYAALTT
                     LVVTLIVALFVFELPARVSAGAITEGVVAGIFPIGYIVLMAVWLYKVSIKTGQFSIIQ
                     DSIASISVDQRIQLLLIGFCFNAFLEGAAGFGVPIAICAVLLIQLGFEPLKAAMLCLI
                     ANGAAGAFGAIGLPVSIIDTFNLSGGVTTLDVARYSALTLPILNFIIPFVLVFIVDGM
                     KGIKEILPVILTVSGTYTGLQLLLTIFHGPELADIIPSLATMVVLAFVCRKFKPKNIF
                     RLEASEHKIQKRTPKEIVFAWSPFVILTAFVLVWSAPFFKKLFQPGGALESLVIKLPI
                     PNTVSDLSPKGIALRLDLIGATGTAILLTVIITILITKLKWKSAGALLVEAIKELWLP
                     ILTISAILAIAKVMTYGGLTVAIGQGIAKAGAIFPLFSPVLGWIGVFMTGSVVNNNTL
                     FAPIQATVAQQISTSGSLLVAANTAGGVAAKLISPQSIAIATAAVKKVGEESALLKMT
                     LKYSIIFVAFICVWTFILTLIF"
     gene            complement(15245..16771)
                     /gene="spa"
                     /locus_tag="PF788_001487"
     CDS             complement(15245..16771)
                     /gene="spa"
                     /locus_tag="PF788_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylococcal protein A"
                     /protein_id="HDG6303751.1"
                     /translation="MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQ
                     NAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNK
                     DQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNK
                     EQQNAFYEILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNK
                     EQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNK
                     EQQNAFYEILHLPNLTEEQRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNNKP
                     GKEDNNKPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGK
                     EDGNKPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIK
                     PGQELVVDKKQPANHADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL
                     "
BASE COUNT         5506 a         2607 c         3043 g         5682 t
ORIGIN      
        1 tgttcaacct aaaggggaac gtatgaaatc aaaaggtatg gttctatata tgaatagaaa
       61 cactaagact acaaccggga agtatatagt gagtgaaaca cttcatgatg aagatggtag
      121 acctaagagt aaagataaag aatatcccgt taaaatggta gacaataaaa tcattccaac
      181 taaaggtatc aaagacgaaa atataaaaaa agaaatcgag aattttaagt tcttcgcgca
      241 atatggcagc tttaaagatt tgtcgaagta caaagacggc gatatatcat ataatccaga
      301 ggtaccgagt tattcagcaa aatatcaatt aactaatgat gactataatg taaaacaatt
      361 acgaaaaaga tataaaatac caacgaataa agcaccaaag ttattgttga aaggttcggg
      421 agacttaaaa ggttcatcag ttggatataa agacattgaa tttacttttg tggagaaaaa
      481 aggtgaaaat acttttttta ctgatagtct acatcttgaa ccgagtgagg ataaataatc
      541 atccacacac acgattcaat atgaaattca aatatgttgc tgtaaaataa tgtaaaataa
      601 acgtattcat attactgaat tgagggatag tatgcaacgt gattatttaa ttcgagtaga
      661 aactgagagt atgtcagatt tcaaaaggct caatagttta atgattggtt ttgttattaa
      721 aggtgaggca cacatttatg atgaaaataa tatgacgcaa tgcaacagtg gcgacatttt
      781 catcattaac caccgcgact tgtatcgatt tcaacttcaa caagatggca tcatatgtta
      841 tatccaattc caaatgaaat atttagcaga caagtttgat gatgtgcatt gtctatattt
      901 tcacttaaca gatgcgacca caacaaagaa tatacatcaa ctgagaaata taatggcaag
      961 actggtttca acacatatcc gacataatga gttgtctaaa ttgactgagc aacaacttgt
     1021 gattcagttg cttatgcata tgattcatta tgtcccgcgt acatatcatt cgaaccaaag
     1081 tatcttaaat gatgataaag tgaatcaagt atgcgactat atcgagttac attttcatga
     1141 agatttaagc ctttcagaat taagcgaata cgttgggtgg tcagagagcc atctgtctaa
     1201 aaagtttaca gaatcgctag gtgtaggatt ccatcatttc ttaaatacga cgcgaattga
     1261 gcatgcgaaa ctcgatttga catacacaga tgaaaccatt actgatattg cattgcaaaa
     1321 tggcttttca agtgcagcga gctttgcgag aacatttaaa cactttacgc atcaaacacc
     1381 taaacaatat cgaggtgatc gtccagcaat cactgaaaac cagcaatcgg cacaacatga
     1441 ttatcacgac cgtgaattga tattactttt aaatgactac attgaagaaa tgaatcattt
     1501 tattgaagat attgaaaaga tgaactataa agagattgcc tttcaaccaa ccaatcacca
     1561 actaaatcaa tttaatcata ttattcaagt gggctatttg aggaatttgc tcaatacaca
     1621 gtatcaatca cagttgctta catgtcatca tgattttcaa gtcaatgaag tattagcata
     1681 tgatgtgatt ccatatatca tgaaaaagct caatgcgcca ttcacgtatg atgcagaaat
     1741 ttcgaatata ttttatgata ttgatttgtg tttagacttt ttattagatc ataactttag
     1801 tttgaccatg catttggatc agtatgactc acgtgattat atcgatgcat ttaaaatttt
     1861 tatccatcac gttgccctgc atgtcagtca tagaaaagat ttgaagttca acttgtatgt
     1921 gacgacattg cacacgtctt tgattgaaat gattgattat tttaaagcat tattccctaa
     1981 tggtggcttg tacattcact tagatcaagc tacggaaaga catctaccat tattgaaacg
     2041 acttgagcca cacatcgacc attttgtatt tgatgccaat tcaaatgacg ctgttgattt
     2101 taataaaatg aatgatgatg aatttaaaac cgcgagtcaa atgattatta ataaaacgaa
     2161 ttaccttatc gacttaatgc atcgtcatcg cctaaagcgt ccactcattt tactcaattg
     2221 gaatacattg acgggtgata catttattac aaacggcgaa tattttagag gtggtatcat
     2281 cattgagcaa ttattaaaat taagttctaa agtagagggt atcggttatt ggttgaatta
     2341 tgatttgcac gtcagtcatt gtaaaaatga acgggattat atgaattcta ttgaactatt
     2401 tcatcaatat aatggaaaac gtccggtcta tttcacggca ttgctattta ataaattaac
     2461 aagcaatatt ttgtattctg atgatacatg tattgtcacg gggactgatt caaattttca
     2521 aatattgtta tatgatgcaa agcattttaa tccgtactta gcgttggaca atcaaatgaa
     2581 tatgcgtgcg acggaaatga ttcatttgaa cattaatgcc ctggaagaag gtatgtataa
     2641 gattaaacat tttaccttag ataaagaaaa tggtgcgtta tttaatcttt ggcgcaaaca
     2701 tcatacgata catggcatgg acaaggactc tatagattac gttaatcgaa tgagttttcc
     2761 gaaattagaa gtatatgata tagatatcac ggacacactg gcattaaaca ttaaaatgat
     2821 tacgaatggg attcacttaa ttgaagtaaa acgttaccca agttcataaa atgatcacaa
     2881 atcacaaatt ttgatataca taatttgtga ttttttatat tcaaagctaa aattgcaaaa
     2941 aattaatggt taacatctct gttgttggca atataaataa tgattaatca tttatgatgt
     3001 aactaaggag atgaaggata tgaatcaaca attaattgaa actttaaaat ctaaagaagg
     3061 caaaatgatt gagatcagac gttatttaca tcagcatcca gaattatctt ttcatgaaga
     3121 tgaaacggcg aaatacatcg ctgaatttta caaaggtaaa gatgtggaag tagaaacgaa
     3181 tgtcggacca cgtggaatta aagtaacgat tgattcaggg aaacctggta aaacattagc
     3241 aatccgtgca gactttgacg cattacccat tactgaagat acaggattat cttttgcatc
     3301 acaaaataaa ggtgttatgc acgcatgtgg tcacgatgca catacagcat acatgcttgt
     3361 attagcagag acgcttgctg aaatgaaaga tagttttaca ggaaaagtcg ttgtgataca
     3421 tcaaccagct gaagaagtac caccaggtgg tgctaaaaca atgattgaaa atggtgtatt
     3481 agacggtgtt gatcatgtat taggtgtaca cgtcatgagc acaatgaaaa caggtaaagt
     3541 gtattacaga cctggttatg ttcaaacagg acgcgcattc ttcaaattga aagttcaagg
     3601 taaaggtggt catggttcat caccacatat ggccaatgat gccattgttg caggtagcta
     3661 cttcgtcaca gcgttacaaa cagttgtatc tagacgacta agtccatttg aaaccggtgt
     3721 tgtcacaatc ggttcatttg acggtaaagg tcaattcaat gtcattaaag atgttgttga
     3781 aattgaaggt gatgtacgtg gattaacaga tgctacaaaa gcaacaattg aaaaagaaat
     3841 taaacgttta tcaaaaggat tagaggatat gtatggtgta acttgcacct tagaatataa
     3901 cgatgattat ccagcattat ataatgatcc agagtttact gagtacgtgg ctaagacgtt
     3961 gaaagaagca aaccttgatt ttggtgttga aatgtgtgaa ccacaaccac cttcagaaga
     4021 ctttgcatat tatgctaaag aacgcccaag tgcctttatt tatacaggtg cagcggtgga
     4081 aaatggtgaa atttacccac atcatcatcc taaatttaac atttcagaaa aatcattact
     4141 tatttctgca gaagcagtag ggacagttgt tttagattac cttaaaggag ataactaaca
     4201 tgaatgaaac gtatcgcggg ggcaacaagt taatcttagg tattgtatta ggtgttatta
     4261 cattttggtt gtttgcacaa tcacttgtaa atgttgtacc gaatttacaa caaagttttg
     4321 gtacagacat ggggacaatt agtattgcgg tcagtctaac tgcactattt tcaggcatgt
     4381 ttgttgttgg agcaggtggt ctggcagata aaattgggcg cgtgaaaatg acgaatatcg
     4441 gtttattatt aagtattatt ggttcagcat taattattat tacgaattta ccggcattat
     4501 taattttagg tcgtgttata caaggtgtat cagcagcgtg tattatgcct tctacattgg
     4561 ccattatgaa aacttattat cagggtgctg aacgtcagcg tgccttaagt tattggtcta
     4621 tcggttcttg gggtggcagt ggtatctgtt cactcttcgg tggtgcagtt gcgacaacta
     4681 tgggttggag atggattttc atcttctcaa ttatcgttgc cgtactttca atgttactca
     4741 tcaaagggac gcctgaaacg aaatcagaaa ttaccaatac acataaattt gacgttgcag
     4801 ggctaattgt tctagtagtt atgttgctaa gtttaaacgt tgtcattact aaaggtgcag
     4861 cacttggtta cacatcatta tggttctttg gtttgattgc aatcgtaatt gtagcattct
     4921 ttattttctt aaatgttgag aaaaaagtag ataatccact tattgatttt aaattatttg
     4981 aaaataaacc atatacaggt gcaacgattt cgaacttctt attaaacggt gttgcaggta
     5041 cattaattgt agcgaataca ttcgtgcaac aaggtttagg ttatacagca ttgcaggcag
     5101 gatacttatc aattacttat ttaatcatgg tgttattgat gattcgagtt ggtgaaaaat
     5161 tattacaaaa aatgggttct aagcgaccaa tgttattagg tacattcatt gtggtcattg
     5221 gtattgcact tatttcatta gtattcttac caggcatatt ttatgttatc agttgtgtcg
     5281 taggatattt atgtttcgga ctaggcttag gtatttatgc aacaccttct acagatacag
     5341 ctatttcgaa tgcaccgtta gataaagttg gcgttgcttc aggtatttat aaaatggctt
     5401 catcacttgg tggcgcattc ggtgtcgcaa ttagtggtgc tgtatatgct ggtgcagttg
     5461 ctgcaacgag cattcataca ggtgcgatga ttgcactttg ggttaacgta ttaatgggaa
     5521 tcatggcatt tatcgcaatt ttattcgcga ttcctaatga tgataaacgt gtcaaagatg
     5581 cgaaataata acgatgacac gccaagtgtt ttgataatga tataaatgaa agtaaagcaa
     5641 attaaatgag gaaatgtata gagcagtgca tatagataaa tctatgattg gattaacact
     5701 aatataaata taaatgaaaa tgaaaaacca tccacttaaa tttttgataa gttaggtgga
     5761 tggttattta ttgcgttgtt ctaaaaattt ggacatttat atggaaagaa ctatatataa
     5821 tgtgaaggtt atggcaattc gcttcaatga aggcgacgtg taaaagtgta tattaaacgt
     5881 ttcggggtca gactccgaga acagtgtccg tcatgcttac cgcatactaa tgaagcatta
     5941 ttatatcagt gtttatagcc gatttaagat aataaatttt gctaaacaaa aaagccaacc
     6001 catgaatgtt ggattggctt tttacatgca tctgaatctc taattttaaa aaaatatgaa
     6061 tataaataag acagtaaaaa ttaaatttca gttgttgcaa tttcttcatc tgtaggtaca
     6121 tcatcgttaa ggccaacaag tgcttcagaa acatttcgtg aatgataacc gatacgttca
     6181 agaacaccaa tcatatcgat atatagtaat ccgccttttg ttgtacattc accacgatta
     6241 aggcgtttaa tatgaccttt gcgtagttta tgttcaatat taaatgattc tctactacgt
     6301 tctacaattt catctttttt cgttttgtca taaacatcta acatgtcgat ggctttatca
     6361 aatgactcag caacatggtt gaataattta tccataccgc gttgtgcatc ttctgtaatg
     6421 cgaatatctt catcatgttg gcgttttaat tgagcgacat actcttctgt tagctctgct
     6481 acttttaaaa tagagcgatt gacatcaaac ataactgcta aacgctcaac gtctgccttc
     6541 gtaatggctt ttgtagaaat tctaactaaa taatttcgaa tgctatcatt gattgtttca
     6601 acagcttgat gcttttgttc aagctttttg atcaattttt tatcgtcttt tgtaatttcg
     6661 cgaatgtctt caaacattga taagacaatc tgacccacat tttgtaattc tttttgagtt
     6721 tcttgtaatg caacaccagg tgcgtgataa acaagatctt tgtttaagtg ctgaggttta
     6781 tagtcatcag caatatcttt acctgggaca agctttgtaa caatccatgc taaacctgct
     6841 acaaatggta attgaatcaa agtatttgtt atgttgaaga taccatgtga tactgcaatc
     6901 gtcatcgctg gttttaagtg ccataaatct tgtaacaaac taatcaaatg aatcacaact
     6961 ggcaagaaaa ttgtgaagat aattaccccg attaagttaa agatgacgtg tacaagcgcc
     7021 gcacgttttg cagcgattga gccggctaaa ctagctaaga tagctgtaat cgtggtacca
     7081 atgttatcgc ctagtaacac agggattgct gcgtttaagc taattaaatc ttgttgataa
     7141 aattcttgta aaataccaat cgtcgcactt gaactttgaa ctagtgctgt taaccctgcg
     7201 ccgacaatga cagcgagtat tggatttgta gacatatcaa gcattaattg cttaaatcca
     7261 tctaatgatg ctaaaggttt aacggcatca cccataaatt ctagaccgaa gaatagtgaa
     7321 ccgaaaccga atagtatgcg gccaatgtta ttgattttag agcgtttaaa gaaaaagatt
     7381 aagaatgcac ctaatgctaa aattggcatt gcatattcgc ctaaatctat accgataata
     7441 aatgcagtta ccgttgttcc gatattagca cccattatca ctccaatggc ttgtttcaat
     7501 gtcataaatc cagctgttac cagtccgatt gtgataactg tcgtacctga actactttgt
     7561 attaaaatag ttacaacgat acctgcaata acacctaata ctggatttga tgtaaatttg
     7621 tttaaaatat ctcgtagcct gtctcctgct gatgcttgaa gcccgtctcc catgattttt
     7681 aagccgtaaa ggaaaatacc taaaccacct aaaaaggaga aaatgacttc tgtaaccgac
     7741 atttccatta tttcacctca aataagcttt atatttagat tatcgcttat aattgtaaat
     7801 ttaatgttaa gattaggtaa aattatttaa caatatatgt tatttgtata tgacttgtaa
     7861 aatatcgtca cttattatgt aaattttcag tgtgaaatgg caggtttgca atcacttgtt
     7921 taacaaaatg atgcaatcaa tcatgtaatt atgtttcatc aaaaaaatca tgagagtgga
     7981 acaacgaaat aatttttatg aaaacatcat ttctgtccca gtctcatgat ttgaaatcac
     8041 caaataaaaa tctattaatg gttttcgtta taacaatttg tgttctttta ataatgactc
     8101 aatgtacgta ccttttatct ttttaaggaa tcctgctaat gcgagttttt gcattttcga
     8161 atctttagta atctcacgca aatcttggtg gtcattcagt tcgtatatgg catccattaa
     8221 gacgcgaaga tcaaatggac tattgatgac ttctggaata ccacgatcta tatttagtaa
     8281 ttgataaaca gcttccatgg cagtacgaac cgaatattct gttgtaaata cagtgtctcg
     8341 ctctgtttct gcaaagttac caataaatgc taagttctga gattgatgcg ggacgactaa
     8401 aggtctgtcg ccgatagcac gcgtcatgaa ataagatgtg atatatggca tataaacagg
     8461 aatcgtatta gatgcatgtt ttgctaagtc ttcaattttg tcagttgata cacctaagtg
     8521 atacagccat tcttggcata tttcattacc actacattct gtaattggct ttttaatata
     8581 atcgccgttt acatctgaat ataaggcata aatccatgta gatatttcat tttcaggttg
     8641 gtctttaaac tgttgctgac gattgattgt aaaactcatt tgccatgcag aatcattgat
     8701 tgtaataata ccgcctgtaa ctgttttgcc tgcaagtggg tcacgtttac aaatactttc
     8761 tattgtatcg ataatctctt tattgtttgt tgtagaagtt gctgaaacaa accaactttt
     8821 tttaggaata ttttggcaaa acttatcagg attaccaaat tcaggacttt gtcgcgctaa
     8881 atttttccat agtgtccaac taccacctaa ttcgtcagtt ggtggcgctg gtgtatcatt
     8941 atcaccataa gtagagcttt ctgtaatact accgtttgtc acaaagacaa gatcgtttat
     9001 agtcagttta atagattctg cattaccatt acggtcaatt aatatttctc gggcaatttt
     9061 ttgacttgtc gtaacatcta ttttaatatc ttcgactttt acatcgtatt caaattgaac
     9121 cccatgcgat tttaaatatt caaccatagg taatactaaa gattcatatt gattatattt
     9181 agtgaatttt aaagctgaaa agtctgcgag accactaata tgatgaacga atcgcattag
     9241 atagcgacgc atttccattg cagaatgcca cggttcaaat gcaaacatcg ttttccagta
     9301 aatccaaaag tttgaattaa agaagtcatc ggaaaataca tctgttattt tgacatcatc
     9361 taaatcttct tcattcgtta agcataaatc taaaatttct ttaatcgccg ttttagtcaa
     9421 agtgaagtct ccgtctgtga ctaaacgttg accctgtttc tcaataacac gacagcgaga
     9481 atagttaggg tcttctttgt ttagccaata gaactcatct aatacagacg cgttatcgat
     9541 ttctaatgaa gggatagatc tgaataagtc ccacaaacat tcaaagtggt tctccatttc
     9601 acgaccaccg cggacaacat agccttttaa aggcatattt tcaccatcaa gactaccacc
     9661 tgctttaggt aactcttcta aaatatgaat cttcgaacct tccatttgac catcccttat
     9721 taaaaaacaa gctgcagcaa gtgaagctag accagatccg attaagtaag cggatttgtt
     9781 ttctacattt tcaggttttt tagggcgcgc aaatgcttca taatttccat aactgtaata
     9841 catatccacc aagtcctttc gtattagaat acactcagac tatacccctt tgtgaattgc
     9901 aaatattagt atttatattg gtaaatttga cgaaattaga tcatttttat atttttgatt
     9961 tttaaaattt tatcactcga atgtttttgg attctgaggt gcgggacttg gaataattat
    10021 gtattttgaa agaagttact taaactaacg cctagtagag tgataattcc gcctataata
    10081 gcaagggttg ttggtagctc gtctaataac agataagata ataataaaga aacgataggt
    10141 gttaaataaa gagacattgt tgcatcagag acaccaactg acttcacaat ataagcaagc
    10201 aaaacgtatg gaattatagt agggaatata gctaaataaa gtaccgatac tattgatgta
    10261 aaagtggcgc cgtgtatatc gttgatgatt tcaggaataa aaataagcat aaatggtgag
    10321 cttgccatta ttgtatatag tgtgaaagcg atgaagccgt atttttctat gtattttttc
    10381 tggaaagtaa aatacaaact ttcactaaaa gatgcaagta aaataataaa aacacctaat
    10441 acattaatag ttgtgtaatc atctttactt attgaaataa tggatattcc tataaatgcg
    10501 acgagtgaac ttaaccaatt ccattttgaa aaatgctctt ttaaaaatat ataagctaaa
    10561 gcactagaaa aaataggcgt tgtagagact agaattccag atatacctgc actaatcaaa
    10621 gcttcaccaa aatttaaagc tgtgtgatat atcacaaatc cacaaaatcc taaaataaaa
    10681 ataacaggga tatctcttag ttcaggggta ggcaatttct ttataattac gaacggcaag
    10741 agaattattg ttgctaaaat taaacgaaat gccgacaatg attctgcact aaaatcattt
    10801 aacgcaatct ttatcattgg aaatgcagat ccccacaata tgatagtaaa taaatatgat
    10861 agaaaagtag tgtcttgaag tttattcatt aatatcatca ctcctttaat tatgtgtttc
    10921 tatattaaaa aatatgattt aaaatgagta caaccaattt tgaatggatt tacctatcca
    10981 attttaaaag ggagggagaa gatggctaaa tataaagata ttgctagtga cataagagat
    11041 aaaataatca caggggattg gttttatgga atgaaaatac cttcacatag gcagttggcg
    11101 atacagtaca acgtaaatag agtaacgatt attaaaagta ttgagttatt agaagctgaa
    11161 ggatttatct atactaaagt aggtagtgga acatatgtta atgactattt gaatgaagca
    11221 catattacaa ataagtggtc tgaaatgatg ttatggtcct ctcaacaaag aagtcagtat
    11281 acggtgcaat taattaataa aattgagaca gatgattcgt atatacatat aagtaaaggt
    11341 gaattgggta tatcgttaat gccacatatt caattgaaaa aagccatgtc taatacagcc
    11401 agtcatattg aagacttatc ttttggttat aataatggct atggttatat caagttaaga
    11461 gatattatcg ttgaacgaat gtcaaagcaa ggtataaatg taggtagaga aaatgtaatg
    11521 atcacttcag gcgctttaca tgccattcaa cttttatcta ttgggttttt aggtcaagat
    11581 gccataataa tttcgaatac accatcatat attcactcta caaatgtttt tgagcaattg
    11641 aattttagac atattgatgt tccttataat caaattaatg aaattgatac catcattgat
    11701 agatttatta attttaaaaa taaagcgatt tatatagaac ctaggtttaa taacccgaca
    11761 ggtcgttctt taacgaatga gcaaaagaaa aatataatta cttatagcga aagacataat
    11821 attcctatca ttgaagatga tatctttaga gatattttct ttagcgatcc aactccttct
    11881 atcaaaactt atgataaatt gggaaaagtt atacatataa gcagtttttc aaaaacgatt
    11941 gcaccagcaa taagaatagg ttggattgtt gcttctgaaa aaataataga gcaattggca
    12001 gatgtaagaa tgcaaattga ctatggatcc agtattttgt cacaaatggt tgtatatgag
    12061 atgttgaaaa ataagtctta tgataaacac ttagtaaagt taaggtatgt tttaaaagat
    12121 aaacgagact ttatgttaaa catcctcaat aatttattta aggatatagc acattgggag
    12181 gttccaagtg gaggttattt tgtatggtta gtctttaaaa tagatataga tattaaatat
    12241 ttattttacg aattgttaag taaagaaaaa atattaatca atccgggtta catttatggc
    12301 agtaaagaaa agagtataag gctatctttt gcctttgaat caaatgaaaa tattaagcat
    12361 gcgctctata aaatttatac atatgtgaaa aaggtttaat taaaacaata attcgaatca
    12421 ttatgtggca tgttaaacag ctaaatataa gctatgcaca tttaacaagc ggatactcct
    12481 gacgcaatta tagtatcatt acatattgtt taatcgtttg gggtaatgta attaaaaggt
    12541 aaaataggca gagtgttata cataaaatgt aaagaaagag gcgatagaat gtctaaaatc
    12601 aggtctttta caatattaag tctacttatt tacttagcta tgatgtgcta tacagtagtg
    12661 acctatccaa aattaccaac caaagtgcct attcattata atttagcagg ggatgctgat
    12721 aattttgctg ataaatgggt gctgcttttg attaatagcg catttatagt gatttggctt
    12781 atatttttca ttgcaggtag atactatgaa cgatttgcca aatggtcaca ttataatcat
    12841 acaccacgtg aaattcgagc gattaaatta tttttaagta cgttaaattt agagattatg
    12901 agctatatgt ctatcttcac agtattagaa atttggcaaa tacaacacca tcatcaattc
    12961 aatttactat ggtttaatat gatatttatc attatcattg gtttgacgct tgtcatattt
    13021 tgtttacttc ctacaattca taaaatgaga gattctcaat aaaaatataa actctcatga
    13081 tgcagttttg aagcgaattc ctgagattat tataaataat atctagtatt tataattaaa
    13141 atgatatatt atttattata gttaaatatt gtgtatattt tgtgaacttt ttgtaaaaat
    13201 tcgattgcct gtcacatata ggagtgttac attttaaata tgtgatcatc gcaaaatata
    13261 agttgaaata ggttgtagat taatcagaat gataaatatt ttatataaag agagggagtc
    13321 attatgacac tacttactgt aaatccattc gataatgtcg gattatcagc cttagttgca
    13381 gcagtaccta ttattttatt tttattatgc ttaaccgttt ttaaaatgaa aggcatttat
    13441 gcagcattga caactttggt tgttacattg attgtggctt tatttgtatt tgaattacca
    13501 gcgcgtgtat cagcaggtgc gattacagaa ggcgttgttg ccggtatttt cccaatagga
    13561 tatatcgttt taatggcagt ttggttatat aaagtttcta ttaaaacagg acaattttct
    13621 attattcaag atagtattgc aagtatttca gtggaccaaa gaatccaact attattaatt
    13681 ggattttgtt tcaacgcatt tttagaaggt gcagcaggat ttggtgtgcc aattgcgatt
    13741 tgtgcagtat tattaattca acttggattt gaaccattaa aagcagcgat gttatgttta
    13801 attgctaatg gtgcggcggg tgcctttggt gcaattggtt taccagttag tattattgat
    13861 acgtttaact taagtggagg cgttacaaca ttagatgttg cgagatactc agcattaaca
    13921 cttccaattt taaactttat tattccattt gttttagtat tcattgtaga tggtatgaaa
    13981 ggtattaaag aaattttacc tgtcatttta acagtgagtg gtacatatac tggattacaa
    14041 ttattattaa caatattcca tggtccagaa ctagcagaca ttattccatc actagcaaca
    14101 atggtggtgt tagcatttgt ttgtcgtaaa tttaaaccga aaaacatttt cagattggaa
    14161 gcgtctgaac ataaaattca aaaacgaacg cctaaagaaa ttgtctttgc ttggagtccg
    14221 ttcgtaattt taactgcctt tgtattagta tggagtgcac cattcttcaa aaaattattc
    14281 caacctggag gtgcacttga aagtttagta ataaaattgc caattccaaa tactgtgagt
    14341 gatttatcgc ctaaaggaat tgcgttgcgt ctcgatttaa ttggtgcaac tgggacagcg
    14401 attttattaa cagtaattat tacaatttta attacgaagt taaaatggaa aagtgcaggt
    14461 gctttattgg tcgaagcaat taaagaatta tggttaccga tccttacaat ttcagctatc
    14521 ctagctattg ctaaagttat gacatacggt ggtttgactg tagcaattgg acaaggtatt
    14581 gctaaagcgg gagcaatttt cccattattc tctccagtat taggttggat tggtgtgttt
    14641 atgactggtt cagttgtaaa taacaatact ttattcgcac ctattcaagc gacagtggca
    14701 caacaaattt caacaagcgg ttcattactt gtggcagcta acactgcagg tggtgtagca
    14761 gcgaaactta tttcaccaca atcaattgcc attgcgactg cagctgttaa aaaagttggt
    14821 gaagaatctg cattattaaa aatgacgtta aaatacagta ttatatttgt tgcttttatt
    14881 tgtgtttgga cgtttatact aacgttaata ttctaaatat aaataatgtt gtcacttgga
    14941 ttcaaatgac attttaaatc taattattca tgaatcgaac tagtacgaaa tgcaatgagc
    15001 atcttgtcta gttcgatttt ttaatgccta aaaatgtcat atatgtaatc agagtagaaa
    15061 gtgttgaggc gtttcagaag ttgtttagaa aagtaagtaa aataaaaaat gcactgagca
    15121 acaaaagatg ttgctcgtgc atttagatga ttcttatcat ttcaaataag aatgtgttaa
    15181 tcaacgtata taagttaaaa ttggtttgga taaaatgata tctatcgttg tgtattgttt
    15241 gtttttatag ttcgcgacga cgtccagcta ataacgctgc acctaaggct aatgataatc
    15301 caccaaatac agttgtaccg atgaatggat tttcttcacc agtttctggt aatgcttgag
    15361 ctttgttagc atctgcatgg tttgctggtt gcttcttatc aacaacaagt tcttgaccag
    15421 gtttgatcat gtttttatca gctaatttgt tatctgcagc aattttgtca gcagtagtgc
    15481 cgtttgcttt tgcaatgtca tttactgtat caccaggttt aacgacatgt actccgttac
    15541 catcttcttt accaggtttg ttgccatctt ctttgccagg cttgttgccg tcttctttac
    15601 caggtttttt gttgtcttct ttaccaggct tgttgccatc ttctttacca ggttttttgt
    15661 tgtcttcttt accaggcttg ttgccgtctt ctttgccagg cttgttgttg tcttctttac
    15721 caggcttgtt gttgtcttct ttgccaggct tgttattgtc ttctttgcca ggcttgttat
    15781 tgtcttcctc ttttggtgct tgagcatcgt ttagcttttt agcttctgct aaaatttctt
    15841 tgctcactga aggatcgtct ttaaggcttt ggatgaagcc gttacgttgt tcttcagtta
    15901 agttaggtaa atgtaaaatt tcatagaaag cattttgttg ttctttgttg aatttgttgt
    15961 cagcttttgg tgcttgagca tcatttagct ttttagcttc tgctaaaagg ttagcgcttt
    16021 ggcttgggtc atcttttagg ctttggatga aaccattgcg ttgttcttcg tttaagttag
    16081 gtaaatgtaa gatttcatag aaagcatttt gttgttcttt gttgaatttg ttatccgctt
    16141 tcggtgcttg agattcattt aactttttag cttctgacaa taggttagca ctttggcttg
    16201 ggtcatcttt taagctttgg atgaaaccat tgcgttgttc ttcgtttaag ttaggcatat
    16261 tcaagatttc atagaaagca ttttgttgtt ctttgttgaa attgttatca gctttcggtg
    16321 cttgagattc gtttaatttt ttagcttcac ctaaaacgtt agtgctttgg cttgggtcgt
    16381 ctttaagact ttgaatgaag ccgttacgtt gcgcttcgtt taagttaggc atgttcaaga
    16441 tttcatagaa ggcgctttgt tgatctttgt tgaagttatt ttgttgcgca tcagcttttg
    16501 gagcttgaga gtcattaagt ttttgagctt cacctaaaac gttagcactt tggcttggat
    16561 catctttaag gctttggata aaaccattgc gttgatcagc atttaagtta ggcatattta
    16621 agacttgata aaaagcattt tgttgagctt catcgtgttg cgcagcattt gcagcaggtg
    16681 ttacgccacc agatataagt aatgtaccta aagttacaga tgcaatacct acacctagtt
    16741 tacgaattga ataaatgttt ttctttttca aattaatacc ccctgtatgt atttgtaaag
    16801 tcatcataat ataacgaatt atgtattgca atactaaa
//
LOCUS       DAMQWL010000051        16782 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.051, whole genome shotgun sequence.
ACCESSION   DAMQWL010000051 DAMQWL010000000
VERSION     DAMQWL010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 16782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16782
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.051"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(139..1155)
                     /locus_tag="PF788_001488"
     CDS             complement(139..1155)
                     /locus_tag="PF788_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HoxN/HupN/NixA family nickel/cobalt transporter"
                     /protein_id="HDG6303752.1"
                     /translation="MTVFKNERLSWLPYIAIVILLHVIGFSFLWIAGKDHHILFGMGI
                     LAYTLGLRHAFDADHIAAIDNTVRKLLQQRKDPSGVGFYFSIGHSSVVFLMAVFLGVS
                     VKWAKDELPHFQDIGGTIGTLVSGFFLVLIGVLNLIILISLINLFAKLRREHIEEAEV
                     DALLESRGLVSRFVGPYFKLITRSWHVLPLGFLFGLGFDTASEIALLALSSGASQQAI
                     SFIGILSLPILFASGMSLLDTLDGVVMKYAYNWAFFNPIRKIYYNITITAISVMAALV
                     IGMIELLQILADKLDLHGAFWAFIGSIEFDYLGYILVALFLITWLISSLIWKFGRIEH
                     KWSR"
     gene            complement(1320..1895)
                     /locus_tag="PF788_001489"
     CDS             complement(1320..1895)
                     /locus_tag="PF788_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HDG6303753.1"
                     /translation="MTLPKIGKPATRALNSQGIYTLEAVSQYTKSSLMEMHGVGPKAI
                     SILEQALFQHQLHFKTEVQSSLPFKLTGDVSCNHAPKRQQMIDFIVVTAALDIELLRS
                     LVTTEFIWSVPGRFDIYGPQILIQELSNHYNQVASLNIHSSITHGCLGSMHGIEILKT
                     GKEIHFAHFFEFENHKKDAKLSKVTSYIVVG"
     gene            2120..3028
                     /gene="rarD"
                     /locus_tag="PF788_001490"
     CDS             2120..3028
                     /gene="rarD"
                     /locus_tag="PF788_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDG6303754.1"
                     /translation="MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIF
                     SAIFMIFILAVGQKQRNAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGH
                     VLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSII
                     LALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWL
                     LFSGAITAIPLILFSAGAKRIPLSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFI
                     FIWTGIVLYSLSQYIKLKKHPVAKTL"
     gene            complement(3441..4859)
                     /locus_tag="PF788_001491"
     CDS             complement(3441..4859)
                     /locus_tag="PF788_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDG6303755.1"
                     /translation="MENTVKYRKFILPIVVGLLIWALTPFKPDAVDPTAWYMFAIFVA
                     TIIACITQPMPIGAVSIIGFTIMVLVGIVDMKTAVAGFGNNSIWLIAMAFFISRGFVK
                     TGLGRRIALHFVKLFGKKTLGLAYSIVGVDLILAPATPSNTARAGGIMFPIIKSLSES
                     FGSKPKDGSARKMGAFLVFTEFQGNLITAAMFLTAMAGNPLAQNLASSTSNVHITWMN
                     WFLAALVPGLVSLIVVPFIIYKIYPPTVKETPNAKSWAENELATMGKIALAEKFMIGI
                     FVVALTLWIVGSFIHIDATLTAFIALALLLLTGVLTWQDILNETGAWNTLVWFSVLVL
                     MADQLNKLGFIPWLSKSIATSLGGLSWPIVLVILILFYFYSHYLFASSTAHISAMYAA
                     LLGVAIAAGAPPLFSALMLGFFGNLLASTTHYSSGPAPILFSSGYVTQKRWWTMNLIL
                     GFVYFIIWIGLGSLWMKVIGIF"
     gene            complement(5097..5561)
                     /gene="bstA"
                     /locus_tag="PF788_001492"
     CDS             complement(5097..5561)
                     /gene="bstA"
                     /locus_tag="PF788_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol transferase BstA"
                     /protein_id="HDG6303756.1"
                     /translation="MTTKTVFDVIDMGLGYLVNVYDAWKVEKVLDDYHKPFSNTIHWQ
                     FGHVLTIFESALAVAGKENIDLNIYRPLFGNGSSPDEWKDEVPSIERILEGLQTLPER
                     ARNLTEDDLAIELKQPIVGCNNLEELLVLNAIHIPLHAGKIEEMSRILKNLK"
     gene            5728..6066
                     /locus_tag="PF788_001493"
     CDS             5728..6066
                     /locus_tag="PF788_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HDG6303757.1"
                     /translation="MSVSDQIMKGLLDGAILGLIAQGETYGYEIMTKLKNQEFPEISE
                     GSIYPVLMRLNKKGYVDTTIKKSSNGGPRRKYYTITDSGLKELKVFKSKWQVLNKGMI
                     NLFGGENDVK"
     gene            6056..6823
                     /locus_tag="PF788_001494"
     CDS             6056..6823
                     /locus_tag="PF788_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303758.1"
                     /translation="MLSKQSQDFLEKLRVELLFRGKTEAEVEELLEELEDHLTMAEKN
                     NEDTSSIINTPIKSMADQLSPEISLTTGLYKYITLYFAFILAVIIIPRFLDLGTFDVT
                     IAFLLYIASIVILGVVIGMLILRNTLVRFGDQKITYVINVTYGIIVFLWMILGGLIIK
                     KYPIYSFFELSDKQSFIVGLVLLIALIGTCILIKQKIYALIVLVISLPSLIARIAAIF
                     SKEPDTFNLVSVSILIILNIAFIIYTFVNFRKLKKED"
     gene            complement(6942..7580)
                     /gene="pcp"
                     /locus_tag="PF788_001495"
     CDS             complement(6942..7580)
                     /gene="pcp"
                     /locus_tag="PF788_001495"
                     /EC_number="3.4.19.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyroglutamyl-peptidase I"
                     /protein_id="HDG6303759.1"
                     /translation="MHILVTGFAPFDNQNINPSWEAVTQLEDIIGTHTIDKLKLPTSF
                     KKVDNIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAI
                     HLDGAPAYFSNLPVKAMTQSIINQGLPGALSNSAGTFVCNHTLYHLGYLQDKHYPHLR
                     FGFIHVPYIPEQVIGKPDTPSMPLEKIVAGLTAAIEAISNDEDLHLALGTTE"
     gene            complement(7732..8688)
                     /locus_tag="PF788_001496"
     CDS             complement(7732..8688)
                     /locus_tag="PF788_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HDG6303760.1"
                     /translation="MNYQVLLYYKYMTIDDPEQFAQDHLAFCKAHHLKGRILVSTEGI
                     NGTLSGTKEETEQYMAHMHADERFKDMVFKIDEAEGHAFKKMHVRPRKEIVALDLEDD
                     VDPRHTTGQYLSPVEFRKALEDDDTVIIDARNDYEFDLGHFRGAIRPNITRFRDLPDW
                     IKENKALFADKKVVTYCTGGIRCEKFSGWLLKEGFEDVAQLHGGIATYGKDPETKGEY
                     WDGKMYVFDDRISVDINQVEKTIIGKDWFDGKPCERYINCANPECNKQILVSEENETK
                     YLGACSYECAKHERNRYVQANNISDNEWQQRLTNFDDLHQHA"
     gene            8932..9903
                     /locus_tag="PF788_001497"
     CDS             8932..9903
                     /locus_tag="PF788_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDG6303761.1"
                     /translation="MSQQDLPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQ
                     LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCY
                     LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG
                     GVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP
                     FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGH
                     MLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAKGHQSFQFQ"
     gene            complement(10052..10567)
                     /locus_tag="PF788_001498"
     CDS             complement(10052..10567)
                     /locus_tag="PF788_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HDG6303762.1"
                     /translation="MTNFTFDGAHSSLEFQIKHLMVSKVKGSFDQFDVAVEGDINDFS
                     TLKATATIIPSSINTKNEARDNHLKSGDFFGTDEFDKITFVTKSVSESKVVGDLTIKG
                     ITNEETFDVEFNGVSKNPMDGSQVTGIIVTGTINREKYGINFNQALETGGVMLGKDVK
                     FEASAEFSISE"
     gene            10947..11795
                     /locus_tag="PF788_001499"
     CDS             10947..11795
                     /locus_tag="PF788_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HDG6303763.1"
                     /translation="MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPY
                     DIWVASYRLYQTVKYWPKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHI
                     KHYEGIKKVIEIDEVKSRLPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVD
                     SIEALEIREVTKNEDSVTGSIDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQ
                     DKKVYQNIIKFARSFADVNVGEPLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHL
                     SKAPSI"
     gene            11824..12378
                     /locus_tag="PF788_001500"
     CDS             11824..12378
                     /locus_tag="PF788_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type riboflavin transporter
                     substrate-binding protein"
                     /protein_id="HDG6303764.1"
                     /translation="MKKQDISVKTVVAIGIGAAVFVILGRFVVIPTGFPNTNIETSYA
                     FLALISAIFGPFAGLMTGLVGHAIKDFTTYGSAWWSWVICSGIIGCLYGWIGLKLNLS
                     SGRFSRKSMVYFNIGQIIANIICWALIAPTLDILIYNEPANKVYTQGVISAVLNIISV
                     GIIGTILLKAYASSQIKKGSLRKE"
     gene            12431..14143
                     /locus_tag="PF788_001501"
     CDS             12431..14143
                     /locus_tag="PF788_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303765.1"
                     /translation="MTEPIISFKDFSFQYHSQATPTLQNINVDIYPGEKVLVVGASGS
                     GKSTFANCINGLIPFKTKGNITGELYINNQDATVSCLHDRSNVVGTVLKDTDGQFIGL
                     TAAEDMAFLLENNCVEQDDMKKNVSYWAEKVGMIEHLNHRPQDLSGGQKQRVSLGGIL
                     IHRTPILILDEPLANLDPATGHETLRLLNNIHEETKSTMIIVEHRLEESLDDTFDRVL
                     LFKDGKIIANTTPSDLLKSSKLKEAGIREPLYCTALKYAEVDVESIDNLANLRDVCMS
                     EHVKFKVKKWIDETSANNDNKYKSEPLLELNEVCVQYSDYSNSVLNNVQLNVYRREML
                     SIVGHNGAGKSTLAKAICGFLDITGNIQFCNRGFNQLSISERSEFVGYVMQNPNHMIS
                     EKMIYDEVALGLRARGMKESDIKIRVENVLKICGLYAFRNWPIAALSYGQKKRVTIAS
                     VLVLNPEIIILDEPTAGQDFYHYNEIMSFLIELNRQGKTIIMITHDMHLLSEYSSRTV
                     VLSKGQVVADTTPVLVLNDKKICEIASLRQTSLFEMAEYIGISEPQKLVQLFINHDRK
                     VRRQ"
     gene            14140..14973
                     /locus_tag="PF788_001502"
     CDS             14140..14973
                     /locus_tag="PF788_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HDG6303766.1"
                     /translation="MNQYNTIGFHPGNSRIHQLNATVKLLFLLVVSISAMVTYDTRYL
                     ILISASSILLVKYAHIEWKQVRFVVKFILFFTILNIIAVYIFDPEYGVKIYNQRTELV
                     NGIGRFTLTSQELFYLFNLILKYISTVPLALIFLFTTNPSHFAASLNQLGVNYKISYA
                     VSLALRYIPDIQETYFNISQAQQARGYDNSKKAKFTSRVKGIKRIVLPLIFSSIERID
                     TISTAMELRQFGQYKRRTWYVKKQLKKDDYVVLCLTLILLMLVVTLFFLNNSRYFNPW
                     H"
     gene            15020..15517
                     /locus_tag="PF788_001503"
     CDS             15020..15517
                     /locus_tag="PF788_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6303767.1"
                     /translation="MINTERLNLMIPSSSHLIELYNICSHPQANIYTPKGLHNSKLDT
                     QRWIEKWRNHWQQYQFGYFVLVKKIDCSVIGICGYEYRQLKQETVLNLFYKLHPSFEG
                     QGYACEAITAITNFVNYIDQETVKVIRTNKCNQRSINLAERLKFKRDDTMDDIINQGD
                     IVFYK"
     gene            15635..16759
                     /locus_tag="PF788_001504"
     CDS             15635..16759
                     /locus_tag="PF788_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HDG6303768.1"
                     /translation="MHKKYLLLFFLLLSVALLYSCSKQNEKAQNKSVNPNEYAKHKSK
                     MDEHWETYHGQVYHVFYHPLITDPKVAFTGDTHQAKGNNDWMITVSEFKKSLNELYKN
                     NYIIVNPHDVYDLSSHHVKAKKIKLPKGKKPLIISIDDMNYYSYMRHHGYADRLVLDK
                     NKHVVSETTDKKGHATYSDDNDIVPILNKFVKEHPDFSLNGEKGVVALTGYEGVLGYR
                     TNELTSKDYTKNKKAAEEVVRAMKRDGWSFASHSYGHINFEKTSLEGIKRDTKRWKDE
                     VEPIVGKTDMFVFPHGAQDRHTQAYDYLVDEAEFKFIAGVGPNNFTDISATNVYQDRV
                     AIDGLNLFEFKYKLKPFFNPENVYSKQDRRYFKGNRDYEE"
BASE COUNT         5842 a         2587 c         2942 g         5411 t
ORIGIN      
        1 gaaaaatacg ctctcaaaat gaagtcatct ctaaaagaaa cgatttaaag atgactactg
       61 agagcgtagc ataatggaag aagtgtgcag ggtgtctaaa aatgcaacaa tacaaaggta
      121 gttgcaagac aagttgcctt atctagacca tttgtgttct atgcgaccaa acttccaaat
      181 taaacttgaa ataagccaag taattaaaaa taatgcaact aaaatatagc ctaaataatc
      241 aaattcgatc gaaccaatga atgcccaaaa cgcaccatgt aaatctaact tatcagcaag
      301 aatttgtagc aattcaatca tcccaatcac taatgctgcc atgactgata tcgcagtaat
      361 cgttatattg taatagattt tgcgaatagg attgaagaat gcccaattat aggcatactt
      421 cattacaaca ccatctaatg tatccaataa actcatacct gatgcgaata aaattggtaa
      481 agataagatt ccgataaatg aaatggcttg ttgtgatgcg cctgaagaaa gagcgagtaa
      541 cgcaatttca ctagctgtat caaaaccaag tccaaataaa aagccaagtg gcaatacgtg
      601 ccaactacgc gtgattaatt tgaaataagg tcctacaaat cgagaaacca atcctctaga
      661 ttcaagtaat gcatcgactt cagcttcttc aatgtgttca cgacgtaatt tagcgaacaa
      721 gttaattaaa gagattaaaa taattagatt caacacaccg ataagcacta aaaagaaacc
      781 tgaaactagt gtaccaatcg ttccaccaat atcttggaaa tgcggtaatt catctttagc
      841 ccattttaca gataccccta aaaaaacagc cattaaaaat acgacagatg aatgtccaat
      901 tgaaaaatag aaacccacac cagatggatc tttgcgttgc tgtaataatt tgcgaaccgt
      961 attatctatt gcagcaatgt gatctgcatc aaatgcatga cgcaaaccta atgtatatgc
     1021 aagaatcccc ataccaaata agatatgatg gtcttttcca gcaatccata aaaaactaaa
     1081 cccaataacg tgtaacaaaa tgacaatagc tatgtatggt aaccagctta agcgctcatt
     1141 tttaaaaaca gtcaaaatat atccttcttt cataacatga tatttaatca tactgtatgt
     1201 tcaatgggca ctctagtaat aagtgttcat ataacaaaaa tgttatgcca aattatttgt
     1261 tatataaaaa tatacatgta accacaaaag attttttgcg atatatataa tttgataaat
     1321 taaccaacaa caatgtaaga tgtcactttg cttaacttgg catccttttt atgattttca
     1381 aattcaaaaa aatgagcaaa atgaatctct ttaccagttt ttaatatttc aataccatgc
     1441 atggaaccta agcacccatg tgtgatgctg gaatggatat tgagactagc aacctgattg
     1501 taatgattag atagttcttg aattaatatt tgaggtccgt atatgtcaaa gcggccaggg
     1561 acagaccaaa taaattctgt tgtaaccagt gaacgtaata attcaatatc taatgctgct
     1621 gtaacaacta taaaatctat catttgttga cgtttaggcg catgattgca tgacacatct
     1681 cctgttaact taaaaggtaa tgatgactga acttccgttt taaaatgtag ttggtgctga
     1741 aataaagctt gttccaatat tgatatagct ttaggaccaa cgccatgcat ctccattaga
     1801 gatgacttcg tatattgtga tactgcttct aatgtgtata taccttgtga atttagcgcg
     1861 cgtgttgcag gctttccaat tttaggtaaa gtcatttgta tccatccttt atgttgtatg
     1921 gtagtctttc tggcaatata ccctgatttg tacagaatta tttataaaat taatattgtt
     1981 tagtggttgg tgaataaatg tgggaaatat aaacaaaatg atatctttat cgaaatatta
     2041 ttagtaaaat cgttatatta gcataaccaa gtgagcgtat gcagtaaatt aaaaattagg
     2101 aaagtaagga ggtttgaagg tgaattcaga gtataaaaaa ggcatatttt tagcactcag
     2161 tgcatacatt ctgtggggaa tactacctat atattggcag ttcgttgatg caataggcgc
     2221 atttgaaatt ttagcctttc gtattatatt ttcagcaata ttcatgattt tcatactcgc
     2281 ggttggacaa aaacaacgca atgcatttca acgagatatg aatcaattgt taggcaagcc
     2341 cattcagcta ttagcgattg tcgtagcagg ctatgtcatt acattaaatt ggggtacatt
     2401 tatttgggct gtaacgaacg gtcacgtcct acaaacaagt ttaggttatt atataaatcc
     2461 acttgttagc attttgctcg cacttatctt tttaaaagaa agattcaata aatttgaatg
     2521 gctagccatt ttattcgcat tcatcggtgt attatatatg acgctcaaga ttggagaatt
     2581 cccaatcgtc tctattatat tagcgttatc ctttggtaca tacggattat tgaaaaaagt
     2641 agtacatatt gatgccatca gcagtattac gattgaatgt attgttaccg cacctgctgg
     2701 actaatatac gttatttatt tatggcagca acatcagatg tcatttggat tgaacatgtc
     2761 atcattttgg ttgttatttt ctggtgctat tacggcaata ccactaatcc tattctcagc
     2821 cggggcaaaa cgtattccac tttcgctaat aggatttatt caatacgttg gaccaacaat
     2881 aatgtttgta ctcggcatat ttgttttcaa agagcctttt agtatagatc aattaattac
     2941 gtttatattt atttggacag gtattgtgtt atatagtctt tctcaataca ttaaattgaa
     3001 gaaacatccg gtcgcaaaaa ccctataaaa tacgaggaaa gataattata cgtgttttca
     3061 atatcctttg tgtcatgatg aggtgagact gaggtatgtg tgcagtaaca gtgacagacg
     3121 tataaatttg aaacattaaa tatgaaataa ggcactttcg ttgaattcgc aattaaaatg
     3181 aatttaaacg aaggtgtttt ttgtatgatg atttatgagg gcatacgtaa tgttaatcaa
     3241 tgaagcggaa tagtatagaa atgtatttta tgtgatgtta cgtaatgact taaatcttta
     3301 tacaaatttt cagtgaagca cgcaatgatt taaaggataa acgtatttta aaaagggagt
     3361 cttgatttag caaaggttga ttttaaatac aaattaaaaa gcgcccaaat caatgagatt
     3421 cgagcgctaa tttaaatatt ttaaaatata ccaattactt tcatccaaag tgatcctaaa
     3481 ccaatccaga taataaagta gacgaaacct aatattaagt tcattgtcca ccaacgtttt
     3541 tgagtcacgt aacctgaaga gaatagaatc ggcgctggac cactactata gtgtgttgtt
     3601 gaagctaata ggttaccgaa gaaacctaac attaatgcac tgaataatgg tggtgcaccg
     3661 gctgcgatgg caacgcctag taatgctgca tacatcgcac tgatatgtgc tgtagaactt
     3721 gcaaataagt aatgtgaata gaagtagaac aatattaaaa tgaccaggac tataggccag
     3781 cttaagccac caagacttgt agcaatggat ttacttaacc aaggaataaa tccaagcttg
     3841 tttaattggt cggccattaa cactaatact gagaaccata ctaatgtgtt ccaagcacct
     3901 gtttcgttta aaatgtcttg ccatgttaag acgcctgtca ataataacaa tgctagcgca
     3961 ataaaggccg ttaaagttgc atcaatatga atgaaacttc cgacaatcca tagtgttaac
     4021 gcaacgacaa aaataccaat cataaatttt tcagctaaag cgattttacc catagtcgct
     4081 aattcatttt cagcccaact cttagcattt ggtgtttctt taacagttgg tggataaatt
     4141 ttataaataa taaaaggtac aacaattaag gaaacaagtc caggaactaa agcagctaga
     4201 aaccaattca tccatgtaat gtgaacatta gatgtgctag atgctaaatt ttgtgcaagg
     4261 gggttaccgg ccattgcagt taaaaacata gccgcagtaa ttaaattacc ttggaattct
     4321 gtgaaaacaa gaaatgcacc cattttgcgt gctgatccgt ctttcggttt cgaaccaaat
     4381 gattcagaaa gtgatttgat aattgggaac atgattccac cagcacgcgc ggtattactt
     4441 ggtgtagcag gcgctagaat taaatctaca ccgacgatag aatatgctaa tcctaatgtt
     4501 tttttaccaa ataatttgac gaaatgaagt gcgatacgtc taccaagacc tgttttcaca
     4561 aatcctctcg aaatgaaaaa tgccatagca attaaccaaa tgctattatt accaaaacca
     4621 gcgacagccg ttttcatgtc aacaatgcca acgagtacca tgattgtaaa tccaattata
     4681 gagacggccc caattggcat cggttgtgta atacaagcaa tgattgtcgc gacgaatatt
     4741 gcgaacatat accatgctgt tggatccaca gcatccggtt taaaaggtgt aagtgcccaa
     4801 ataaggagac ctacaacgat agggagtata aacttacgat atttaaccgt gttttccatg
     4861 ttaaaacgtc cttctttcta tgttttatac atatttcaat ttaagaataa agctaactac
     4921 aaaagatgta cagtaataat taaatataaa attaaattaa cgaaatcatt aatataatta
     4981 tttttcgaga atcggtgaag aactggtata gatggtgttt attaaattca aaaaagtgac
     5041 cttttaaaca aataaaaaac ccgttaacgt gttgttaacg gttaataagc acatatttat
     5101 tttaaatttt ttaatatacg agacatctct tcaattttac cagcatgaag tgggatgtga
     5161 atggcattta atactaataa ctcttctaag ttattacaac cgacaattgg ctgtttcaat
     5221 tcaattgcta aatcatcttc agttagattt cgtgcacgtt caggtaaagt ttggagacct
     5281 tctaaaatcc tttcaatact cggtacttca tccttccatt catctggaga cgaaccattt
     5341 ccgaataaag gtctatagat atttaaatca atattctctt taccagcaac agctaaggcc
     5401 gattcaaaaa ttgttaatac atgaccaaat tgccaatgaa tggtattaga aaaaggctta
     5461 tgataatcat caagtacctt ttcaactttc caagcatcat acacatttac taaatatcct
     5521 aaccccatat caatgacatc aaatactgtt tttgtagtca ttattaattc ctcccccata
     5581 aataaaatat acttccgtaa gtattaccct attaacaaag ttgttagtca tttaaggaat
     5641 gtgtacaaca actaccttac aataaaagat agttgacgaa aagttctcaa tgtactatct
     5701 tattatgtaa gatagtaggt gattaaaatg tcagtgtcag atcagattat gaaaggtctc
     5761 ttagatgggg cgatattagg tctcattgcc caaggcgaaa cgtatggata tgaaattatg
     5821 acgaaactta agaatcaaga gtttccagag ataagtgagg gtagtattta tccagtttta
     5881 atgcgtttaa acaaaaaagg atacgttgat acgacaataa aaaaatctag taatggcggc
     5941 ccgaggcgga aatactatac gattaccgat tcaggtttaa aggaactaaa agtatttaaa
     6001 tcgaaatggc aagttttgaa taaagggatg attaacttgt ttggagggga aaacgatgtt
     6061 aagtaaacaa tctcaagatt ttttagaaaa attacgtgtt gaattgttat ttagaggtaa
     6121 gactgaagca gaagtagaag agttattgga agagctcgaa gatcatttaa ctatggctga
     6181 aaaaaataac gaagatacaa gttcaattat taatacaccg attaagtcaa tggctgatca
     6241 attatcacct gagataagtc ttactaccgg tttgtataaa tatattactt tgtacttcgc
     6301 ttttatttta gcagtcatta taattcctag gtttttagat ttgggtacat ttgatgtgac
     6361 aattgcattt ttactttata tagctagtat cgttatttta ggtgttgtca ttggtatgct
     6421 gattctacga aatacattag tccgatttgg tgaccaaaaa ataacgtatg ttataaatgt
     6481 gacttatgga attatcgtat ttttatggat gattttaggt ggcttgatta ttaaaaaata
     6541 tcctatctat agtttctttg agttaagtga caaacagagt ttcatcgttg ggttagtact
     6601 tttaattgcg ctcattggaa cttgtatttt aattaaacag aaaatttatg cgctcatcgt
     6661 gttggtaatt tcattgccaa gtttgatagc aaggatagca gctatcttta gtaaagaacc
     6721 agacactttt aatttagttt cagtaagtat actcatcatt ctaaatatag catttattat
     6781 ttatacattt gtaaatttta ggaagttaaa aaaagaagac taaacaatgt cgtttagcta
     6841 aaatacatca ttatagtaaa actgtatacc aatcatccaa aagcacccta aagttagact
     6901 taaactaaca aattagggtg cttttgtttg tgcacttata actattccgt tgtgcccagg
     6961 gctaggtgta aatcctcatc attagaaata gcttcaatgg ctgcagtcaa acctgcaact
     7021 atcttttcta atggcataga tggtgtatcg ggtttaccaa tgacctgctc tggtatgtat
     7081 ggcacatgaa taaatccgaa tcgtaggtga gggtaatgct tatcttgtaa ataacctaag
     7141 tgataaagtg tgtgattaca aacaaatgta cctgcgctat ttgaaagtgc tccaggaagt
     7201 ccttgattaa taatactttg agtcattgct ttaactggta aatttgaaaa ataagctggc
     7261 gcaccgtcta agtgaatggc ttgatcaata ggttgaaaat catcattatc tggaatacgt
     7321 gcatcatcaa tattaatggc gacacgttct ggggtaatgg catttctacc accagcttgt
     7381 cctatagcta gtacaacatc ataatgatta gatgccaacg ttttatttat aatattatct
     7441 actttcttaa aagaggttgg tagttttaat ttatcgattg tatgtgtgcc aataatatct
     7501 tctagttgag tcacagcttc ccatgaggga ttgatatttt gattgtcaaa aggcgcaaac
     7561 cctgttacta aaatgtgcat tttaagacac cccgcagtat taaaatttaa tttagtataa
     7621 cacgcgcata attaaaaaca tatcaggtta tgtatgcgca taaaaaacag ccttgaaaaa
     7681 cctttataaa tcggattttc aaagcgtgtt ttgaaaggta tttaattaaa actaagcatg
     7741 ttgatgtaaa tcatcaaagt ttgttaaacg ttgttgccac tcattatcac taatattatt
     7801 tgcttgaaca taacgattac gctcatgttt agcacattca taagagcatg cacctaaata
     7861 tttagtttcg ttttcttcag aaactaatat ttgtttatta cattctgggt tagcgcaatt
     7921 aatataacgt tcacatggtt tgccatcaaa ccaatcctta ccaataattg ttttttcaac
     7981 ttggttgata tcaacactga tacggtcatc aaatacgtac attttaccgt cccaatattc
     8041 accttttgtt tcaggatctt taccatatgt agcaataccg ccatgaagtt gagctacatc
     8101 ttcgaaacct tcttttaaaa gccatccaga aaatttttcg catcgaatgc caccagtaca
     8161 gtacgtaacc acttttttat ctgcaaataa cgctttattc tctttaatcc agtcaggcaa
     8221 atctctaaaa cgtgtgatat ttggacgaat tgcacctcgg aaatgaccta aatcaaattc
     8281 ataatcatta cgtgcatcaa taatgactgt gtcatcatct tcaagagctt ttctaaattc
     8341 tacaggtgat aaatattggc cagttgtgtg tcttggatcg acgtcatctt ctaaatctaa
     8401 agcaacgatt tcttttcgag gacgtacatg cattttctta aaagcatgtc cttcagcttc
     8461 atcaatttta aacaccatat ctttgaatcg ttcatcggca tgcatatgtg ccatatattg
     8521 ttcggtttct tcttttgtac cagataatgt gccgttaata ccttctgtag aaacaagaat
     8581 tctacctttt aaatggtgtg ctttacaaaa ggctaagtga tcctgagcaa actgttcagg
     8641 gtcatcaatc gtcatatatt tataatataa aagaacttga tagttcatag gttaatctcc
     8701 ttctataaac atgttataag catgttaatt tttaaaataa agcgtcaata cgcatatttg
     8761 tctacgtcca tcattttaac agagttgtat tgtcattcaa tatttctagc ttgaaatcag
     8821 ccactagacc gataaaatag atagatgaaa ccgttatcat tttatttgat agttatcttg
     8881 tttaaaataa aattgatagt taaaacgaat gaaatgaaag gaatgatcat gatgtcacaa
     8941 caagatttac ctacattatt ttatagcggg aagtccaata gtgctgttcc aattatatct
     9001 gaaagtgaat tacaaacaat tacagctgaa ccatggcttg aaatttccaa aaaaggattg
     9061 caactagaag gattgaactt tgatcggcag ggacaactct ttttattgga tgtattcgaa
     9121 ggcaatattt tcaaaatcaa tcctgaaacg aaggaaatca aacgaccttt tgtaagtcac
     9181 aaagcgaatc ctgcagcaat caaaatacat aaagatggcc gattattcgt ttgttattta
     9241 ggagatttta aatctacagg aggcattttt gcagctacag aaaatggtga caacttacaa
     9301 gatattattg aagatctttc aacagcatat tgtattgatg acatggtatt tgattctaaa
     9361 ggtggatttt attttacaga ttttagagga tactctacca atccactagg aggcgtttat
     9421 tatgtttcgc cggactttag aacagtgacg cctatcattc aaaatattag cgtagcaaat
     9481 ggtattgctt taagtacaga tgaaaaagta ctatgggtaa cagaaacaac agccaatcga
     9541 ttacatcgca ttgcacttga agatgatggt gtgacgatac aaccatttgg agctaccata
     9601 ccgtactatt ttacaggtca tgaaggacca gactcatgtt gtattgatag tgacgataat
     9661 ttatacgtag caatgtatgg tcaaggtcga gtgttagttt ttaataaaag gggttatcca
     9721 ataggacaaa tattgatacc aggccgagat gaagggcata tgttacgttc tactcatccg
     9781 caatttatac ctggaacaaa tcaactcatc atttgttcca atgatataga aatgggcgga
     9841 ggatctatgc tttatacagt taatggcttt gcaaaaggtc atcaaagttt tcagtttcaa
     9901 taagacctac ctgaatgaaa ggcgtctaaa attagggtga acagttagtg cttgttacac
     9961 atgagttaaa cgaaaaatgc caactatacc tagggatgat atagttggca tttcgtatat
    10021 atattaaaac aatgaggatt gtgtaatgag attattctga gattgagaat tcagctgatg
    10081 cttcgaattt aacatctttg cctagcatta cgccaccagt ttcaagtgct tggttaaagt
    10141 taatgccata tttttctcta ttgattgtac cagtaacaat aatacctgtt acttgagaac
    10201 catccatagg attcttactt actccgttga attcaacatc gaatgtttct tcgttagtga
    10261 tgcctttaat tgttaaatca ccaacaactt tgctttcaga tactgatttt gtcacaaatg
    10321 taattttatc aaattcgtca gtaccaaaga aatcaccaga ttttaagtgg ttatcacgtg
    10381 cttcgttttt agtgttaatt gagcttggaa taattgttgc agtagctttc aaagtactga
    10441 agtcattaat atctccttca acagctacat caaattgatc aaatgaacct ttcactttag
    10501 aaaccattaa atgtttaatt tggaattcta aactactgtg tgcaccatca aaagtaaagt
    10561 tagtcataat ataaaacctc catattttta tctcttagat atatttttta tacttgatat
    10621 acatacaata ccacctaaaa aacaaagatg caagcatttt atttcgaatt cgaatatttt
    10681 ctgtgatgta tttaaagaat gacctataaa acaccacact attgttatac cctagtcaat
    10741 taattcaaac ataaagaagt gattacaagt ccgtgaaatt tagttaatga gataaatctg
    10801 actattatta tcatttttat agtcactact attgactttg catcaagtga ctcgtactat
    10861 tttaatataa ttctgaaaat tcaaaatata gaacattaaa tatgtagata atattttttt
    10921 gaagttttaa aaaaaggagg cattttatgg gaaattattt ggtattgcaa tcagattttg
    10981 gacttagtga tggcgctgta agtgcaatgt atggagttgc atatactgta agtgatgata
    11041 tacgtgttga aaacttaacg catgatatac caccgtatga catttgggta gcgtcatatc
    11101 gtttatatca aactgtaaaa tactggccta aaggcacagt ttttgtatca gtggtagacc
    11161 cgggtgtagg tagtgatagg cggagcattg cttgcttaac atattcaggt cattacatta
    11221 ttacacctga taatggttct ttaagtcata ttaaacatta cgaaggtatt aaaaaagtta
    11281 tcgaaattga tgaagtgaaa agccgattgc ctcattcgga agaaagtcat acttttcatg
    11341 gtagagatgt ttatgcatac aatggtgcga gattagctgc aaataagata gcgtttgaac
    11401 gtctcggtca ggcaattaat gttgatagta ttgaggcatt agaaataaga gaagtgacaa
    11461 aaaatgagga ttctgttaca ggaagcattg atattttaga tatcagattt gggtcattat
    11521 ggacaaatat tccattggca ttcttaaaat ccttggaaat tgttcatggt aataatttgg
    11581 tggtaacaat ttatcatcaa gataagaaag tctatcaaaa tattattaaa tttgcgcgat
    11641 cgtttgcaga tgttaatgtg ggtgaacctc ttgtgtatgt taactcgcta gtaaatattg
    11701 gtgtagcagt caatcaagac tcattttcag atttatatca tattggtact ggaaatgatt
    11761 ggacgattca tttatctaaa gcaccatcaa tataatgaat tttttatgta aggagtaatg
    11821 aagatgaaaa aacaagatat ttcagttaaa actgttgttg caattggtat aggagcagcg
    11881 gtatttgtaa ttttagggcg ttttgttgta ataccaacag gttttcctaa tacgaatata
    11941 gaaacatcat atgcattttt agcattaata tctgcaatat ttggaccttt tgctggttta
    12001 atgactggat tagttggaca tgctattaaa gattttacga catacggtag tgcctggtgg
    12061 agttgggtta tttgctcggg aattataggc tgtttatatg gctggattgg actaaaatta
    12121 aatctttctt caggccgatt ttctaggaaa tcgatggttt attttaatat cggtcaaatt
    12181 attgcgaata ttatttgctg ggcacttatt gcaccaacat tagatatttt gatttataac
    12241 gaaccagcta acaaggttta tacacaaggt gttatctctg cagtattaaa tattatttca
    12301 gttggcatta ttgggacaat attattaaaa gcatatgctt catctcaaat taaaaaaggt
    12361 agtttacgta aggaatagtt attttgttga atcagatatg taaatgaata tagaaaggta
    12421 atgatatatc atgactgaac caattatctc gttcaaagac tttagttttc aatatcatag
    12481 tcaagcaaca cctacattac agaatataaa tgttgatatt tatccaggag aaaaagtatt
    12541 agtagttggt gcttcgggta gtggtaaatc gacttttgca aattgcataa acggattaat
    12601 tccatttaaa actaaaggta acataactgg ggaactatat ataaataatc aagatgcaac
    12661 cgttagttgt ttacatgata gatctaatgt tgttggtaca gttttaaaag atacagatgg
    12721 acagttcata ggcttaacag cagctgaaga tatggccttt ttattagaaa ataattgtgt
    12781 tgaacaagat gatatgaaga aaaatgtaag ttattgggct gaaaaagttg gcatgataga
    12841 acatttaaat caccgaccgc aagatttatc tggaggtcaa aaacaacgcg tttcattagg
    12901 tggtatatta atccatcgta cgcctatttt aatattggat gagccactgg ccaatttaga
    12961 tcctgcgaca ggacatgaaa cgctgagatt gttaaacaat attcatgaag aaacaaagtc
    13021 aacgatgatt attgtcgaac atcgattaga agaatcatta gatgatacgt ttgatagagt
    13081 tcttcttttt aaagatggaa aaatcatcgc taatacaacg cctagtgatt tgctaaaatc
    13141 atctaagctt aaagaagcag gcatacgtga accattatac tgtacagcgc ttaaatatgc
    13201 agaagtagat gtcgaatcca ttgataactt agcgaattta cgtgacgttt gtatgagtga
    13261 acatgttaaa tttaaagtga aaaaatggat agatgaaaca tctgcaaata atgataataa
    13321 gtacaaatct gaaccgctat tagaattaaa tgaggtatgt gttcaatata gtgactatag
    13381 taatagtgta cttaataatg ttcaattaaa tgtttataga agagaaatgc ttagtatagt
    13441 tggtcacaat ggtgccggca aatcaacact tgctaaagca atttgtggat ttttagatat
    13501 aacaggtaat atccaatttt gtaatagggg atttaatcaa ttgtcaatta gcgaacgatc
    13561 tgaattcgta ggttatgtga tgcaaaatcc aaatcatatg atttctgaaa aaatgattta
    13621 cgatgaagta gcattagggt taagagcacg aggtatgaaa gaatcagata taaagatacg
    13681 agtagagaat gtgctcaaaa tatgcggact ttatgcattt cggaattggc caattgcagc
    13741 tttaagctat ggtcaaaaaa agagggtcac tatagcatct gttttagtct taaatccgga
    13801 aataatcata ttggatgaac cgactgctgg tcaagatttc tatcattata atgagataat
    13861 gtcattttta attgaactaa acagacaggg gaagacgatt attatgatta cgcatgatat
    13921 gcatttattg tctgagtata gttcaagaac agttgtatta tcaaaaggtc aagtcgttgc
    13981 tgataccacg ccagtattgg ttttaaatga taaaaaaatc tgtgagattg catcattgag
    14041 acaaacatcg ctatttgaaa tggccgaata tatagggatt agcgagccac agaaattagt
    14101 acaattattt attaaccatg ataggaaggt gagacgccaa tgaatcaata taatactata
    14161 ggttttcacc cgggaaatag tcgtattcat caattaaatg cgactgttaa acttttattc
    14221 ttattagttg tttctatttc tgcaatggtg acttatgaca caagatattt aattttaatt
    14281 agtgcttcat ctattttatt ggtcaaatat gctcatattg aatggaaaca agttcgcttt
    14341 gttgttaaat tcattctgtt tttcacaata ttaaatatta ttgccgtgta catatttgac
    14401 cctgaatatg gtgtgaagat ttataatcag cgtacagagt tagtcaatgg tattggtcga
    14461 tttacgctaa catcacagga attattctat ctttttaatc taatattaaa atatattagt
    14521 acagttcctt tagcgttaat atttttattc acaacgaatc cgagtcattt tgctgcaagt
    14581 ttaaatcagc taggtgtgaa ttataaaatc agttacgcag tctcactagc attaaggtat
    14641 attccagata ttcaagaaac atattttaat atttcacaag cgcaacaagc aagaggatat
    14701 gataattcga aaaaagcaaa atttactagc cgtgttaaag gtatcaaacg cattgtgtta
    14761 cctttaatat tttctagtat cgaaagaatt gacactatta gtactgctat ggagttaaga
    14821 caattcggac agtataaaag gagaacctgg tacgtcaaaa aacaattaaa aaaagatgat
    14881 tatgttgttt tgtgtttgac gttaatactt ctgatgttag tagttacatt attcttttta
    14941 aataatagtc gatatttcaa cccgtggcat tagtattcat ataaatagtc tttaaataga
    15001 aataggaggg agacatttaa tgataaatac tgaaagatta aatttaatga ttccaagttc
    15061 ctcgcattta attgaacttt ataatatttg tagtcatcca caagcaaata tatacactcc
    15121 caaaggttta cataattcca aattagacac acaacggtgg attgaaaaat ggcgaaacca
    15181 ttggcaacaa tatcaatttg gttactttgt attggtaaaa aaaatagatt gtagtgttat
    15241 tggtatttgt ggatatgaat atcgacaatt aaagcaagaa acagtattaa atttatttta
    15301 taaattacat ccaagttttg aaggacaagg gtacgcatgt gaggctatta cagcaatcac
    15361 aaattttgtg aattatatcg atcaagaaac agtaaaagtt atcaggacaa ataagtgtaa
    15421 ccaacgttca ataaatttag cagaaaggct taaattcaag cgagacgata ctatggacga
    15481 cattatcaat caaggagata ttgtgtttta taaataaaat actatgacat tatctaaaaa
    15541 ataaaattaa aatcccaaca gtttcttaaa aagttatgag ccacataata aaaatgttat
    15601 aattgtgcat aataaaacat agggagaatg tttaatgcat aaaaaatatt tattgctatt
    15661 ttttctgtta ttatcagttg cattgttata tagctgttcc aagcaaaatg agaaagctca
    15721 aaataaatct gttaatccaa atgagtatgc aaagcataaa tcgaaaatgg atgaacattg
    15781 ggaaacatat cacggccaag tttatcatgt gttttatcac ccattaatta cagacccaaa
    15841 agttgcgttt acaggagata cacaccaagc taagggcaac aatgattgga tgattactgt
    15901 aagtgaattt aaaaaatcat tgaacgaatt atataaaaat aattacatca tcgttaatcc
    15961 acatgatgta tacgacttat catctcatca tgtaaaagcc aaaaaaataa aattgccgaa
    16021 aggtaaaaag ccactaatca tctcaattga tgatatgaat tactatagtt acatgagaca
    16081 ccatggttat gctgaccgtt tagtactcga taaaaataaa catgttgttt ctgaaactac
    16141 agacaaaaaa ggccatgcta cttattctga tgacaatgat atcgtgccaa ttttaaataa
    16201 atttgtaaaa gagcatccag atttttcttt aaatggtgaa aaaggtgttg ttgctttaac
    16261 cggttatgag ggcgtattag gttatcgcac gaatgaatta acgagtaaag attatacaaa
    16321 gaataaaaag gcagctgagg aagttgttcg cgcaatgaaa cgggatggat ggtcatttgc
    16381 gagtcattca tatggtcaca ttaattttga aaaaacatct ttagaaggta ttaaacgtga
    16441 tactaaaaga tggaaagatg aagttgaacc aattgtaggt aaaacagata tgtttgtatt
    16501 tccacatggc gcacaggata gacatacaca agcgtatgat tatttggtag atgaagcaga
    16561 gtttaagttt attgcaggtg tcggtccaaa caattttaca gatatatcag caacgaacgt
    16621 ttaccaagat agggttgcga ttgatggtct aaacttattt gaatttaaat ataaactcaa
    16681 accgtttttt aatcctgaaa atgtatatag taaacaagat agacgttact ttaaagggaa
    16741 tcgggattat gaagaatagt taaatttaat aaaaagatag aa
//
LOCUS       DAMQWL010000052        16168 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.052, whole genome shotgun sequence.
ACCESSION   DAMQWL010000052 DAMQWL010000000
VERSION     DAMQWL010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 16168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16168
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.052"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(12..1013)
                     /locus_tag="PF788_001505"
     CDS             complement(12..1013)
                     /locus_tag="PF788_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000390648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HDG6303769.1"
                     /translation="MEEFKQHYKGLIDESLTCQDKVELIKKCEKYTDEVIRKDVLPED
                     IVDIHKNYILTLNLTREDVFKTLDVLQEIVKGFGYSYRDYQRLVDKLQVHDKEIDLAS
                     SLQQTMLKTDIPQFDSIQIGVISVAAQKVSGDYFNLIDHNDGTMSFAVADVIGKGIPA
                     ALAMSMIKFGMDSYGHSQLPSDGLKRLNRVVEKNINQNMFVTMFYGLYEEMNHLLYCS
                     SAGHEPGYIYRAEKEEFEEISVRGRVLGISSQTRYQQQEIPIYLDDLIIILTDGVTEA
                     RNSEGTFIDKQKLLEYIKKHKHMHPQDIVQIIYEAILKLQNPNKKDDMTILIIKRVN"
     gene            complement(1363..1725)
                     /locus_tag="PF788_001506"
     CDS             complement(1363..1725)
                     /locus_tag="PF788_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDG6303770.1"
                     /translation="MIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVA
                     AITGRINKAKIPTHVEIEKKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEV
                     DNALMISLGLNAVAHQKN"
     gene            complement(1722..1892)
                     /gene="mazE"
                     /locus_tag="PF788_001507"
     CDS             complement(1722..1892)
                     /gene="mazE"
                     /locus_tag="PF788_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin MazE"
                     /protein_id="HDG6303771.1"
                     /translation="MLSFSQNRSHSLEQSLKEGYSQMADLNLSLANEAFPIECEACDC
                     NETYLSSNSTNE"
     gene            complement(1977..3125)
                     /gene="alr"
                     /locus_tag="PF788_001508"
     CDS             complement(1977..3125)
                     /gene="alr"
                     /locus_tag="PF788_001508"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDG6303772.1"
                     /translation="MSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYG
                     LGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVA
                     LTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQYEQL
                     VFEGVFTHFACADEPGDMTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAI
                     RPGISLYGYYPSEYVQQKVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTT
                     IALLPIGYADGYLRIMQGSFVNVNGHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDN
                     HRESPQSVEVVAEKQHTINYEVLCNLSRRLPRIYHDGDQRFVTNELLK"
     gene            complement(3191..3550)
                     /locus_tag="PF788_001509"
     CDS             complement(3191..3550)
                     /locus_tag="PF788_001509"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HDG6303773.1"
                     /translation="MIHGIGVDLIEIDRIQALYSKQPKLVERILTKNEQHKFNNFTHE
                     QRKIEFLAGRFATKEAFSKALGTGLGKHVAFNDIDCYNDELGKPKIDYEGFIVHVSIS
                     HTEHYAMSQVVLEKSAF"
     gene            complement(3554..4045)
                     /locus_tag="PF788_001510"
     CDS             complement(3554..4045)
                     /locus_tag="PF788_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HDG6303774.1"
                     /translation="MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEI
                     LDNHLSIVSSVIIILLVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPY
                     FRIQNIDIDVGPIMRRYRLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNK
                     NEE"
     gene            complement(4032..5615)
                     /locus_tag="PF788_001511"
     CDS             complement(4032..5615)
                     /locus_tag="PF788_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HDG6303775.1"
                     /translation="MSEPQKLHPISYFNGIINAIKQNIVVFFIFIIFQLKDFDYTNPE
                     SYLWIGIVFVFFLISYISQIVGIMNTRYWIEDNYFILTTGIFNKKRKELNIKRIQSVD
                     MTQGVVNQIIGGVDLQIKTPSDGIVLSVISKKQGEYLERYIDQLQTELKTEVAQKSSA
                     EKNDNCNHDIEGNVEDIAEGRLDEVQNTDSMLNQKNKRIPIYQMNFKESLFMAMTSGA
                     IGVTLAALVPIYGAVRELIPWSKLNHEISQWVQIVSISVLIIILLVLIVAYIIGTIIT
                     MIRFYGFSVMLENEQLKIEYGLFNKKKVTVPTKRLQAVVERQSYIRRLFGYTAIHFII
                     TSDFENKKIEDDDNDSGSVPILPFIKRDKAYQIIQNLVPDLSYQQVNEGMPLSGFHRH
                     FLIPSIIVIAMAGIGCYFWNQLLLLFTIITIVIIGLFVIKGYLYVKHAGFKMTEEQIT
                     IQNFELLKRNIYYFKAHHIIGFDTWQHTLLKRNNLNNFSFIVAKGVGAQSINLKYARS
                     EDANKLKSWYLRGENDEGL"
     gene            complement(5608..6087)
                     /locus_tag="PF788_001512"
     CDS             complement(5608..6087)
                     /locus_tag="PF788_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303776.1"
                     /translation="MSDYTKLTKSPKSALLYYYITNGLEFILSVAVYVIFYFIWLRFE
                     WPHYLLYILLVLGALSTLKLFIKPLWQYHCRFYKVDQLSVQYRTSFFIYKEETSRIER
                     LQYLSIKSNPISKVLNLYKVGFMTAGHTIYLPMMSHDDVKIIEERTMSNLRGVESDV"
     gene            complement(6295..6855)
                     /locus_tag="PF788_001513"
     CDS             complement(6295..6855)
                     /locus_tag="PF788_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
                     /protein_id="HDG6303777.1"
                     /translation="MNTIRNSICLTIITMVLCGFLFPLAITLIGQIFFYQQANGSLIT
                     YDNRIVGSKLIGQHWTETRYFHGRPSAVDYNMNPEKLYKNGVSSGGSNESNGNTELIA
                     RMKHHVKFGNSNVTIDAATSSGSGLDPHITVENALKQAPRIADARHVSTSRVADLIQH
                     RKQRGVLTNDYVNVLELNIALDKMKD"
     gene            complement(6875..8902)
                     /gene="kdpB"
                     /locus_tag="PF788_001514"
     CDS             complement(6875..8902)
                     /gene="kdpB"
                     /locus_tag="PF788_001514"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000546595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HDG6303778.1"
                     /translation="MHHVNKYFNQTMVIEALKMSFYKLNLKQLIKNPIMFVVEVGMIL
                     TLILICFPDIFGTSYLSRGYLITIFIILLITILFANFSEAFAEGRGKAQADSLRQAQS
                     NLTARLIEENGAYRIVNATELKAGQNIRVENGETIPADGVVINGLATVDESAITGESA
                     PVIKESGGDFDGVIGGTLVTSDWLEIRVESEAGTSFLDKMIALVEGAERNKTPNEIAL
                     FTLLTTLTIIFLVVIVTLYPIASYLHLILPIAMLIALTVCLIPTTIGGLLSAIGIAGM
                     DRVTQFNVLAKSGRAVEVCGDVDVMILDKTGTITYGNRIASEFLPVNQQMLEKLIVAA
                     YMSSIYDDTPEGKSIVRLAKQMYINELPKDIDGTYKPFTAETRMSGIITNEISVFKGA
                     PNSMINLVKQQQGNIPLNIESLCMDVSSKGGTPLIVIENNVMLGVIYLKDVIKDGLVE
                     RFTELRKMGIETVMCTGDNALTAATIAKEAGVDRFVAECKPEDKIKVIKDEQAKGHIV
                     AMTGDGTNDAPALAQANIGLAMNSGTISAKEAANLIDLDSNPTKLIEVVKIGKQLLMT
                     RGALTTFSLANDVAKYFAILPALMMSTIPEMTSLNIMHLSSPKSAIISALIFNALIIV
                     ALIPIAMKGVKVKGYSIDRIFINNMLIYGLGGLIVPFLGIKLIDMIVQFFV"
     gene            complement(8921..10597)
                     /gene="kdpA"
                     /locus_tag="PF788_001515"
     CDS             complement(8921..10597)
                     /gene="kdpA"
                     /locus_tag="PF788_001515"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
                     /protein_id="HDG6303779.1"
                     /translation="MEIILFLTMMVMITYVFSGYLYRVALVQSSRVDLIFTRFENMCF
                     KIIGTDLEHMSAKTYVKHFLAFNGFMGFITFVLLIVQQWLFLNPNHNLNQSIDLAFNT
                     AISFLTNSNLQHYNGESDVTYLTQMIVMTYLMFTSSASGYAVCIAMLRRLTGLTNIIG
                     NFYQDIVRFIVRVLLPLSCLISILLMTQGVPQTLHANLMIRTLSGHIQHIAFGPIASL
                     ESIKHLGTNGGGFLAGNSATPFENPNIWSNFIEMGSMMLLPMSMLFLFGRMLSRHGKR
                     VHRHALILFVAMFFIFIAILTLTMWSEYRGNPILANLGIYGPNMEGKEVRFGAGLSAL
                     FTVITTAFTTGSVNNMHDSLTPIGGLGPMVLMMLNVVFGGEGVGLMNLLIFVLLTVFI
                     CSLMVGKTPEYLNMPIGAREMKCIVLVFLIHPILILVFSALAFMIPGASESITNPSFH
                     GISQVMYEMTSAAANNGSGFEGLKDDTTFWNISTGIIMLLSRYIPIILQLMIASSLVN
                     KKSYHQDKYTIAIDKPYFGVSLIVFIVLLSGLTFIPVLLLGPIGEFLTLK"
     gene            complement(10621..10731)
                     /gene="kdpF"
                     /locus_tag="PF788_001516"
     CDS             complement(10621..10731)
                     /gene="kdpF"
                     /locus_tag="PF788_001516"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HDG6303780.1"
                     /translation="MLLCCKEVMAMLIVLLLVVIALVLYLFYALIRSEKF"
     gene            10869..13526
                     /locus_tag="PF788_001517"
     CDS             10869..13526
                     /locus_tag="PF788_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HDG6303781.1"
                     /translation="MSNTESLNIGKKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNV
                     DIKIGYIEPHQRDETNALAEQLPKITTNFTKHGSHHFQYLDVDRIIEESPTIVLIDEL
                     AHTNISRDRHEKRYMDIEEILNHGIDVHTTLNIQHIESLSSQIELMTGVHVKERVPDY
                     FIMSADVLEVVDISPEQLIKRLKAGKVYKKDRLDVAFSNFFTYAHLSELRTLTLRTVA
                     DLMSDKEKVRHNHKTSLKPHIAVAISGSIYNEAVIKEAFHIAQKEHAKFTAIYIDVFE
                     KNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTVALGLDEWCKNQDVTKLIIGQHIRN
                     KWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELKMNKSPYRPKGKRFAIDMLKMIL
                     IQIICVMMGLWIYQLDKHESSTIILMIFLIGIILLSIWTRSFIIGFLAAIINVFVFNY
                     FFTEPRYTFEVYRFDYPITFIVSILTSILTSALLKQIKFQYSITKKQLYRTDLLFQFN
                     DSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTIPLQNHIDNTTQQHEQA
                     LSWVIKNERQAGATTDTFPGINKWLIPIGTSPIKGILAIDYQSSQVINPYDASILESM
                     LNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRTPLTTIMGNLDILVSH
                     SKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKLQPYLVSELVEEID
                     MILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTSTDTKINLSIRYA
                     SYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLYLVQTILHKH
                     QSNLQYKPNQPHGSIFYFNIYTDFNEGDV"
     gene            13526..14221
                     /locus_tag="PF788_001518"
     CDS             13526..14221
                     /locus_tag="PF788_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6303782.1"
                     /translation="MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQI
                     DKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTK
                     PFNVDELRARIRVIERIAKSHQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSL
                     LELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTH
                     PRIGYQMLQWKEK"
     gene            complement(14590..16110)
                     /locus_tag="PF788_001519"
     CDS             complement(14590..16110)
                     /locus_tag="PF788_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDG6303783.1"
                     /translation="MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILG
                     QAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVT
                     VFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGF
                     IDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF
                     YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQ
                     AKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRA
                     GKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSK
                     ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRKGRNGKPSG
                     SRNRNSKRGNPKFDSKSKRSKGYSSKKKSTKKFDRKEKSSGGSRPMKGRTFADHQK"
BASE COUNT         5368 a         3006 c         2296 g         5498 t
ORIGIN      
        1 tcttttttaa attaatttac tctttttata atcaaaatag tcatatcatc ttttttattt
       61 gggttttgaa gctttaaaat tgcttcatag ataatttgaa caatatcttg tgggtgcata
      121 tgtttatgtt ttttaatata ttctaaaagt ttttgtttat ctataaaggt accttcacta
      181 tttctagctt cagtcacacc atccgttaaa atgataatta aatcatcaag gtatattgga
      241 atttcttgtt gttgatatcg tgtttgtgaa ctgattccta acactctacc tctaactgaa
      301 atttcttcaa attcttcttt ttcagcgcga taaatatatc caggctcatg accagctgaa
      361 ctacaataca ataaatggtt catttcttca tataaaccat aaaacattgt gacgaacata
      421 ttttgattaa tattcttttc aacaacacga tttaaacgtt ttaaaccatc actcggtaat
      481 tgtgagtgtc cataagaatc catgccaaac tttatcatac tcattgctaa agcagctggt
      541 ataccttttc caatgacatc tgcaacagca aagctcattg tgccatcgtt atggtcaatt
      601 aaattaaaat aatctccact tactttttgt gccgccactg aaataacgcc aatttgaata
      661 ctatcaaatt gtggaatatc tgttttaagc attgtttgtt gtaagctaga agctaagtct
      721 atctctttat cgtgaacttg aagtttatct accaatcttt gataatctcg ataactataa
      781 ccaaagcctt taacgatttc ttgtaagaca tctaatgtct tgaacacatc ttcacgcgtt
      841 aagtttaacg tcaatatata gtttttgtga atatcgacaa tgtcttcagg caagacgtcc
      901 ttacgaatca cttcgtcagt gtatttctca cactttttta tcaattctac tttatcttgg
      961 cacgttaaac tttcatcaat taaaccctta taatgttgct taaattcttc cacgattagt
     1021 tgcctcctca cttcccttac aaagcaaatg cttaagcaag gataattatg attcacttac
     1081 taacatttat ttaattgcac ttatcaattt tgtcgtttgc aattttgctg tagatgatac
     1141 ttttaagcta aaaaaaactt taggatggaa tacctaaagc ctaaaaaact taagacatcc
     1201 ttttataata aaaaatatga atatcataac tggtatttgc taaaatcttt gtttataaga
     1261 aaattcttcg tacagaattt agaaatagtt ataattatta taaagttatt gtcttttata
     1321 tcaatatttt atttatctct gaaaaataca tataatagac gcctaatttt tctggtgagc
     1381 tactgcattc agccctaaac taatcattag tgcattatct acttctttca ttttatcatc
     1441 ggataagtac gtcagttttt ctttcaatcg ttttttatca agtgtacgaa tttgttctaa
     1501 taatataact gagtctttat ccaacttata ctttttcttt tcaatctcta catgtgtcgg
     1561 tattttcgct ttattaatcc taccagttat tgccgcaaca ataactgtag gactatattt
     1621 attaccagta tcattttgaa ttatgactac aggtctgact cccccttgtt cagatccctg
     1681 tactggtgat aaatctgcta aataaacatc tcctcgtcta atcattcatt cgttgaatta
     1741 gaagataaat atgtttcgtt gcaatcgcat gcttcacact ctatcggaaa agcttcgttc
     1801 gctagggaga gatttaaatc agccatttgt gaatatcctt cttttaaaga ttgttctaag
     1861 ctatgacttc tattttgact aaaagataac atatgagaac ctccaattga ttccaaaagt
     1921 tattaaatga cctttaatta ctctaatgat aacaaatttt atatgcactg accatattat
     1981 tttaacaatt catttgttac aaaacgttga tcaccatcat gatagattcg cggcaaacgt
     2041 ctcgacaagt tacaaagcac ttcataatta atagtatgtt gcttttcagc taccacctct
     2101 accgactgtg gactttctct atgattatct attaaaatca ccgaatctcc agctttaact
     2161 tgatctggca ctttaacaat tgtctgatcc atacatacgc gaccaataac ttcgcattga
     2221 tgaccattta catttacaaa gctaccttgc attatgcgta aatagccatc tgcatatcca
     2281 ataggtaaca atgctattgt agttgggtca gtagctgtat aagttgcacc ataacttaca
     2341 gactcacccg cttgtagcgt ctttgtttga actacattag caattaattg cacacttggt
     2401 ttaaggtgta ctttaacttt ttgctgtaca tactctgatg gataatatcc ataaagggaa
     2461 attcctggtc ttattgcatt acagaattgg caatccatta atagagagcc tgctgagttc
     2521 tgacaatgta tatattcagg tttaattgct tcattgacca tatctttaaa acgttgatat
     2581 tgttcagttg tcatatctcc tggttcgtca gcacaggcaa agtgtgtaaa cacgccttca
     2641 aatacaagtt gctcatattg ttgaatgatt tcaatcactt cttgatacgt tttagtatct
     2701 ttaataccta aacgtcccat tcctgtatct aatttaatgt gcaaccataa ctttttctct
     2761 tgctcaccag aaatgttttt aattgcttct ttcaaccact gtttagacgg aaccgttaag
     2821 gcaactcggt gttgtatcgc tttatcaata tctttagctg gtaacacacc taagactaaa
     2881 attttagcag taatcccatg cattctaagt tctatcgctt catctaacgt tgctacagca
     2941 aaaaatgtgg cgccattttc cattaaatga cgtgctactt taacactacc tagtccatag
     3001 gcattggctt taacgacagc catcactgtt ttatttggat gcaatgtact gaatactttg
     3061 aaatttgatg caacagcgtt taaatctaca ttcatatacg cagatctata atatttatcc
     3121 gacatattac ttcctcctgt aattcccaca cgttttaaaa ctagatctta attatcattg
     3181 tataacaaat ttaaaatgct gacttttcta aaacaacttg gctcatcgca taatgctcag
     3241 tgtgtgagat actaacatgt acgataaacc cttcgtaatc aatctttggt ttgccaagtt
     3301 cgtcgttgta acagtctata tcgttaaaag ctacatgttt tcctaagcct gtgcctaatg
     3361 ctttactgaa cgcttctttt gtagcaaacc tgccagctaa aaattcaatt ttacgttgct
     3421 catgtgtgaa attgttgaat ttgtgctgtt catttttagt taaaatccgc tcaaccaatt
     3481 ttggttgctt actatataac gcttgtattc gatcgatttc gattaaatct acaccaattc
     3541 catgtatcat tgattattcc tcatttttat tgttttctaa atgtctctcg ttatttaacc
     3601 atcgtttcaa tctacgtgct tcacttctat ctattaattc aatttcagct tgaccacccg
     3661 ctgtataaag ggtcaaagtt gctaatcgat agcgtctcat tataggacca acatcgatat
     3721 caatattttg aatacgaaaa tatggtatta ccttttcatc caaaaataaa atgccgtttc
     3781 gtacacgcaa atggtgtttt tcaaatgcat atctgcagtg cttatatcga tagactggcg
     3841 ctataacaag cgtgaaaaca gcaacaagta atattataat cacactacta acaatggata
     3901 aatggttatc taaaatctcc caaaatagcc agttcaaaat attaaatgcg attaaaagta
     3961 caagcgctat gggtatccaa aacagcacag cacttaacct catcactttt ttagcgtgtg
     4021 gtgacataaa attataatcc ctcatcattt tcacctctta aataccatga tttcaattta
     4081 tttgcatctt cacttcttgc gtattttaag ttaatcgatt gggctcccac acctttagca
     4141 acaataaagc taaaattatt taaattgttg cgtttaagta atgtatgttg ccaagtgtca
     4201 aatcctataa tgtgatgcgc tttaaaataa taaatatttc gtttcaatag ctcgaaattc
     4261 tggatagtaa tttgttcttc tgtcatttta aaacccgcat gtttgacata aagatatcct
     4321 ttgatcacaa ataaaccaat aatgactatt gttataatcg taaataacaa taataattga
     4381 ttccaaaaat aacagcctat acctgccata gctatgacaa taatactagg tattaaaaag
     4441 tgtctgtgga aacctgacaa aggcatacct tcattaactt gttgataaga taaatctggt
     4501 actaaattct ggataatttg atatgctttg tctcgtttaa taaacggcaa tatcggcaca
     4561 ctacctgaat cattgtcatc atcttcgatt tttttatttt caaaatcact tgtgatgata
     4621 aaatgtattg ctgtgtagcc aaataatctt cgtatatatg actgacgttc aacaacagct
     4681 tgcaatcgtt tcgttggtac agttactttc ttcttgttaa agagaccata ttcaatttta
     4741 agttgctcat tttcaagcat caccgaaaag ccataaaatc ttatcattgt tataatcgtt
     4801 ccaataatat atgccactat taatactagt aaaatgatga ttaatactga aatacttaca
     4861 atttgaaccc attgactaat ttcatgattt agcttcgacc atgggatcaa ctctcttaca
     4921 gccccgtaaa tcggtactaa agctgctaac gttacaccaa tggcgccact ggtcattgcc
     4981 ataaatagtg attctttaaa attcatctga tatataggaa tgcgtttatt tttctgatta
     5041 agcatactat cagtgttctg cacttcatct aagcgacctt ctgcgatgtc ttccacatta
     5101 ccttcaatgt catgattaca gttgtcattc ttctcagcac tagacttttg cgccacttct
     5161 gtcttcaact ctgtttgcaa ttgatcaata tatcgttcaa gatattcacc ttgttttttc
     5221 gaaataacac ttaagacaat accatcactt ggtgttttga tttgtaaatc cacaccacca
     5281 ataatttgat tgacgacccc ttgtgtcata tcaacggact gaatacgttt tatatttaat
     5341 tctttacgct ttttattaaa aatacctgtt gttaaaatga aataattatc ctcaatccaa
     5401 tatcgcgtgt tcataattcc gacaatttga gaaatgtatg atattaaaaa gaatacaaat
     5461 acaataccta tccataaata tgattcggga ttcgtataat caaaatcttt caattgaaag
     5521 ataatgaaaa taaaaaagac gactatgttt tgtttgatag cattgattat gccattaaaa
     5581 tatgaaatcg gatgtaattt ttgaggttca gacatcactt tcaacccctc tcaaattcga
     5641 catagttctc tcttcgatta ttttaacatc gtcatgagac atcatcggta aataaatagt
     5701 atgacctgca gtcataaatc caactttata caaattaagc actttactaa ttggattaga
     5761 tttaatcgac aagtattgta aacgttcaat tcgactcgtt tcttctttat atataaaaaa
     5821 tgatgtacga tattgtacac ttagttgatc aactttataa aagcgacaat gatattgcca
     5881 taaaggctta ataaataatt ttaatgtact cagagcacct aaaaccaaca aaatataaag
     5941 taagtaatgt ggccattcaa atcttaacca tataaaataa aaaatgacat acacagctac
     6001 actcaatata aattctaagc cattcgtaat gtagtaatac aacaatgctg acttaggact
     6061 cttagtcaac ttagtataat ctgacatata cccctctccc caaataaaaa attatacgga
     6121 tttataatct atttcatttt atttttatat gatgataatt atagcatatg gaatatttca
     6181 tgctaattta ttcttcctaa aggtacatct aaaaatttaa ttaagcagaa agtgcttgaa
     6241 ttgctaaaaa gacaccatgt ataattttat caacatgatg cctttcatct ataatcaatc
     6301 tttcatctta tcaagagcga tatttagttc aagcacattc acataatcat ttgttaacac
     6361 accacgctgc ttacgatgtt gaatcaagtc ggccactctt gaagtagata catgacgagc
     6421 atcagcaata cgaggtgctt gcttcaatgc attttcgacc gtaatatgcg gatctaagcc
     6481 cgacccagaa cttgttgcag catctattgt tacatttgaa ttcccaaatt taacatgatg
     6541 tttcatgcgt gctattaatt cggtgtttcc attcgattca ttacttccac ctgaagatac
     6601 gccgttttta tataattttt caggattcat attataatca actgcactcg gtctcccgtg
     6661 aaaatatcgt gtctctgtcc agtgctgtcc aatcaatttt gatccaacta tacgattgtc
     6721 atacgtaatt aaactgccat ttgcttgttg ataaaaaaat atttgaccaa ttaacgtgat
     6781 agctaacggg aataaaaatc cacataatac catagttatt atcgttaaac aaatactatt
     6841 tcttatcgta ttcatggtac aggctccttc ctctttacac aaaaaattgt acaatcatat
     6901 ctattaattt aatgcctaaa aacgggacga ttaatccacc taatccataa atcaacatat
     6961 tatttataaa gattctatca atgctgtaac cctttacttt tacacctttc atggcaattg
     7021 gaattaaggc aacaatgatt aatgcattga atatcaaagc tgatataatt gcagatttag
     7081 gtgacgataa atgcataata tttagtgaag tcatttctgg aattgttgac atcattagtg
     7141 caggtaaaat tgcaaagtat tttgctacgt cattagccaa actaaatgtc gttaatgcac
     7201 ctctcgtcat taataattgt ttgcctattt ttacaacctc tattaacttt gtaggattcg
     7261 aatctaaatc aattagatta gctgcctctt tagcactaat tgtccctgag ttcatagcta
     7321 atcctatatt cgcttgtgct agcgcaggtg catcatttgt accatctcct gtcatcgcaa
     7381 caatatggcc tttcgcttgt tcatctttga tgactttaat tttatcttcg ggtttacact
     7441 ctgcaacaaa tctatcaacc ccggcttctt ttgcaattgt agctgctgtt aaagcattat
     7501 cacctgtaca cataactgtt tcaatcccca tttttctcaa ttcagtaaat cgttctacaa
     7561 gaccatcttt aatcacatct tttaaataaa tcacgccaag catgacattg ttttcaatga
     7621 ctattaatgg tgtgccacct ttactcgata catccataca gagagactca atattaagag
     7681 gaatattgcc ttgttgttgt ttgacaagat ttatcatact attaggtgca cctttgaata
     7741 ccgatatttc atttgtaatg attccgctca ttctagtttc agctgtaaaa ggcttatatg
     7801 tgccatcaat gtctttaggc agctcattta tatacatctg cttcgctaat cgtacaatac
     7861 tttttccttc tggcgtatca tcgtagattg atgacatata agcagcgact atcaattttt
     7921 caagcatttg ttgattcact ggtaaaaatt cactagcgat tcgattgcca taagtgattg
     7981 tgcctgtctt gtctaaaatc attacatcga catctccaca tacttctaca gcacgcccac
     8041 ttttcgctaa tacattgaat tgagtaacac gatccatgcc tgcaatacca atcgccgata
     8101 acaaaccacc gattgtcgtt ggtattaaac atactgttaa cgcaatgagc atcgcaatag
     8161 gtaaaattaa atgcaggtaa gatgctattg gatataacgt tacaataacg actaaaaata
     8221 taattgttaa cgttgttaat aatgtaaaaa gtgcaatttc atttggtgtt ttatttcttt
     8281 ccgccccttc aactaaggca atcattttat ctaaaaaaga tgtacccgct tcactctcaa
     8341 cacgtatttc taaccaatca gatgttacaa gtgtaccgcc aatgactcca tcaaaatcgc
     8401 cacctgattc ttttatcaca ggtgcagact caccagtaat tgcagattca tcaacggttg
     8461 ctaatccatt tattacaacg ccatcagcag ggattgtttc tccattttct acccgaatat
     8521 tttgtccggc ttttaactct gtggcgttca ctatccgata cgcaccattt tcttctatca
     8581 atcgagcagt taaatttgat tgtgcttgtc ttaaactatc agcttgcgct tttccacgac
     8641 cttcagcaaa ggcttctgaa aaattagcaa acaatatagt tattaataat atgataaaaa
     8701 ttgtaatcaa ataacctcgc gatagatagc tagttccaaa tatgtcagga aaacatatta
     8761 atatcaacgt taaaatcatt ccaacctcaa cgacaaacat tatcggattt tttattaatt
     8821 gtttaagatt cagcttataa aaactcattt tcaaagcttc tatcaccatt gtttgattga
     8881 aatatttatt tacatgatgc attttttcca tccctttact ttattttaaa gttaaaaatt
     8941 caccaatagg accaagtaat agtactggaa taaatgtcaa accacttagt aaaacgataa
     9001 atacgattag tgatacgcca aaataaggtt tatcaatcgc tattgtatat ttatcttgat
     9061 ggtatgattt tttattcact aaacttgatg caatcattaa ttgcaaaata attggtatat
     9121 aacgagaaag caacataatg attcctgtag agatattcca gaatgttgta tcatctttca
     9181 gtccttcaaa ccctgatcca ttgttcgcag cagctgatgt catttcatac ataacttgtg
     9241 aaataccatg aaaagacgga ttcgttatac tttcacttgc tccaggaatc ataaaagcaa
     9301 gtgctgaaaa tactaaaatt aaaattgggt gtatgagaaa gactaagaca atacatttca
     9361 tttcacgggc gccaattggc atatttaaat attctggtgt tttaccaacc atcaaactgc
     9421 atataaacac cgtcagtaag acaaatatca ataaattcat gagtcctacg ccttcgccac
     9481 caaatacaac atttagcatc attaatacca ttggtcctaa tccacctata ggcgttaagc
     9541 tatcatgcat gttattaaca gaacccgttg taaatgccgt cgtaataact gtaaatagtg
     9601 ctgacaaacc tgctccaaac cgtacctctt taccttccat attcggtcca taaatgccta
     9661 aattcgctag tattggatta ccacgatact cactccacat agttaatgta agaattgcta
     9721 taaaaatgaa aaacattgcg acaaataata tcaacgcatg acgatgtact cgtttaccat
     9781 gtctacttaa catgcgacca aataagaaca acattgacat aggaagtaac atcatactgc
     9841 ccatttctat aaaattgctc caaatatttg gattttcaaa aggtgtcgca gaatttcctg
     9901 ctaaaaatcc tccaccattc gtaccaagat gttttattga ttcaagtgat gcaataggtc
     9961 caaatgcaat atgttgaata tgtccgctta aagtccgaat cattaaatta gcatgcaacg
    10021 tttgtggtac accttgagtc atcaataaaa tactaattaa acatgataat ggtaaaagta
    10081 ctcggacaat aaaccgaaca atatcttgat aaaaattacc aatgatatta gttaatccag
    10141 ttaaacgtct caacatcgct atacaaacgg cgtaacctga tgcactagat gtaaacatta
    10201 aatatgtcat tacaatcatt tgcgttaaat atgtcacatc tgattcaccg ttatagtgtt
    10261 gtaaattact atttgttaaa aaagatattg ctgtattaaa cgctaaatct atcgattggt
    10321 ttaaattatg atttggattt aaaaaaagcc attgctgaac tattagcaat acaaatgtta
    10381 taaaccccat aaatccatta aatgccagaa aatgtttgac atatgtttta gctgacatgt
    10441 gttctaaatc tgtgccgata attttaaaac acatattttc aaatctagta aatattaaat
    10501 ctactcttga cgattgcacc aatgctacgc gatatagata tccactaaaa acatacgtaa
    10561 tcataaccat cattgttaga aacaaaatta tttccatgat aaccctcact taatatattt
    10621 ctaaaatttt tcactacgaa ttaaggcata aaataaatac aaaactaatg caataactac
    10681 cagtaataaa acgatgagca ttgccataac ctccttacaa cacaacaaca tcgtaacaac
    10741 ttgtttatga gagaaatatt aattttcaaa cttagttatt aagaaatcat taagatgtgt
    10801 atgcagaaat aaattttata gcatttaatt gtgaagaata ttatgatatt gctatcgagg
    10861 tgaaggttat gtcaaacact gaatcgctaa acataggaaa aaagcgtgga tctttaacaa
    10921 tttacatcgg ttacagtcca ggtgttggta aaacatttga gatgctttca aatgccattg
    10981 aactatttca aagtaacgtt gatattaaaa taggatatat tgaaccgcat cagcgtgatg
    11041 aaacaaatgc attagctgaa caattaccta aaatcacaac caattttact aaacatggta
    11101 gtcatcattt tcaatattta gatgtcgacc gcataatcga agaatcgccg acaatagtac
    11161 ttatcgatga gttagcacat acgaatattt ctagagatcg tcatgagaaa cgatatatgg
    11221 atattgaaga aattttaaat catggtatcg atgttcatac cactttgaac attcaacata
    11281 ttgaaagttt aagtagtcaa attgaactga tgaccggtgt acatgttaaa gaacgtgtac
    11341 ccgactattt cataatgagc gccgatgtat tagaagtcgt agatatctca cctgaacaat
    11401 taattaaacg cttaaaagct ggcaaggtat ataaaaagga taggctagat gtagcattta
    11461 gtaatttctt tacgtatgcc cacctaagcg aactgcgtac attgacgtta agaacagttg
    11521 ccgacttgat gagtgataaa gaaaaagtcc gacacaacca taaaacgtca ctcaaacctc
    11581 atattgctgt ggcaattagt gggagcattt ataatgaagc agtaattaaa gaggcattcc
    11641 atattgctca aaaagaacat gcgaagttca ctgctattta tatagatgta ttcgaaaaaa
    11701 acaggcaata taaagatagt caaaagcaag tgcatcaaca tctcatgctt gcaaaatcat
    11761 taggagcaaa agtaaaagta gtttatagcc aaaccgttgc attaggatta gacgaatggt
    11821 gtaaaaatca agatgtaacc aaattaatta tcggacaaca tattagaaat aagtggcgag
    11881 actttttcaa tacaccttta attgaccatt taatgtcctt tgaacatagc tataaaatcg
    11941 aaatcgttcc aatcaaacaa atacctgttg aattgaaaat gaacaaatca ccctatcgtc
    12001 ctaaaggcaa acgtttcgcc atagatatgt taaaaatgat tttgattcaa ataatttgtg
    12061 taatgatggg actgtggatt tatcaacttg ataagcatga gtctagtacg attattttaa
    12121 tgatttttct catcggcatc attttattat ccatttggac gcggtccttc atcattggct
    12181 ttttagcagc aattattaac gtatttgttt ttaattattt ttttacggaa cctagatata
    12241 catttgaagt atatcgcttt gactatccta ttacatttat cgttagcatt ttaacaagta
    12301 ttttaacgag tgctttatta aaacaaatta aattccaata ctccattact aaaaagcaac
    12361 tttatcgtac agatttatta tttcaattta atgattcgat taaacaaact tatacagttg
    12421 aaaacttact aataaatgct ggataccaaa ttaatcaatt attgcaacaa tcaattacta
    12481 tatacgttat caatcaatcg aaagtaatta aaacaatacc attgcaaaac catatcgata
    12541 atacgactca acagcatgaa caagcattaa gctgggtaat taaaaatgaa agacaagctg
    12601 gtgcaacaac agatacattt ccaggcatta ataaatggtt gataccaatt ggcacatctc
    12661 cgattaaagg cattctagcc attgattacc aaagttctca agtgattaat ccatatgatg
    12721 catcaatatt agaatcaatg ttaaatgaac tttctctcgc cgttgaaaat gtgacgttac
    12781 ttaaacaaac gagagaatcc atgttacagg ctgaacgtca actgacacat tcaaattttt
    12841 taagatcaat ttcgcatgac atacgtacac cgttaacaac aattatggga aatttagata
    12901 ttttagtatc acatagtaaa gatatgtcta tcatagaaaa ggaacaatta cttgtacata
    12961 gttttcaaga aagtcagtat ttatatctat tagtgacaaa tattttatca ttaacaaaat
    13021 tacagtcatc aaatgttcag ataaaattgc aaccttatct cgttagtgaa ttagtagaag
    13081 aaatcgatat gattttagaa cgtcgccatt taaaaaagcg tataactgta tcatcctcag
    13141 taaatttaca gtttatacac attgacagta agttgatttt acaagcttta ttcaatttga
    13201 ttgaaaatgc agttaaacac acttctactg acaccaaaat caatttatct attcgttatg
    13261 ctagctatga acaaatcgaa tttgccgtta tagacgaagg acctggaatt agtttagaag
    13321 aacaacaaaa gatattcgag cctttttaca caggatcaaa taaatatttt aaagataacc
    13381 aaaaagaaag catgggacta ggcttatatt tagtacagac tatcctacac aaacatcaat
    13441 caaacttaca atataaaccg aaccaaccac acggcagtat attctatttc aatatatata
    13501 cagactttaa cgaaggagac gtataatgca atctaaaata ttgataattg aagatgatca
    13561 cgcaatcaca catttacttg atgttgcatt aactttagat tattacaatg taactacagc
    13621 cgacaatgcc acacaagcac actttaaaat tcaaattgat aaaccagatg tcattttatt
    13681 agatttaggt ttaccagata aagatggatt atgtttgatt tcagaaatca ggcaacatac
    13741 tgacattcct atcattgtaa taagtgcaag acaagaagaa caaacaatta ttcaagcttt
    13801 agataacggt gcgaatgact atatgactaa accttttaat gttgatgagc ttcgggcacg
    13861 aatacgagtc atcgagagaa tcgctaagtc acatcaagaa actaacattg tatttactaa
    13921 cggtttgcta agcatcgact ttggctccaa atctgttgtt attaataatc aggaggtaca
    13981 tttgacgcca aatgaattta gcttgttaga actattgtca aatcataaag gaaaagtact
    14041 cacttatgag atgatattaa aacgaatata tggctatgtt aataagactg aaatgcctag
    14101 tttaagagtg catatgacat cattaagaca aaaactttca caatgtcatg aggacgcaaa
    14161 agatattatt aaaacacatc cacgcattgg ttatcaaatg ttgcagtgga aagagaaata
    14221 attaaataaa aaagatcgct gccattaaac gaatgattgg cagtgatctt ttttatattc
    14281 aacttattat ttatcgcgca ctagcgtcag caaaaagccc tattgttttt tataagaaca
    14341 tgatactgaa atttcataaa gtttatttat gttcgattat tcttaattta aaaatagttc
    14401 tttaaattat atactcacca catttggtgg agaaccatat ttacacagaa tgatataacc
    14461 gcatacagat ctcaatccaa ttaaatattt aacctttaaa acgttagtac tttgatatct
    14521 acagagaatc aattattgaa aacaaaaaag agctcaagac attacatctt taagctctta
    14581 atctataaat tatttttgat ggtcagcaaa tgtgcgacct ttcataggtc tgcttccacc
    14641 gctgctcttc tctttacggt cgaatttttt tgtacttttc ttcttacttg agtatccttt
    14701 tgaacgttta ctcttactgt caaatttagg attaccacgc ttactatttc tgttacgaga
    14761 accacttggt ttaccgttac ggcctttgcg agataatggt ttttcaaaag ttaattgaac
    14821 ttcaacttca tcgtttgctt ctactaactc ttgtaaaagt gcagcaacta aatcaacatc
    14881 gttatattca tttaacaact ctgtagaaat gcgtttcaag cgtgattctg actctttaga
    14941 catccagttt tcaacttttt ctttgatgtc atcttcacgt gcttgaagta cttctttacg
    15001 atgtggtgga cgaagtgcac tcatttttct accgtttgca tcttcaattt gtctgatata
    15061 atccatttcg attggattaa caaacgttac agcgatacct tctttaccag cacgacccgt
    15121 acgaccaata cggtgtgtat agctttcagt atcttgaggt atatcaaagt tataaacatg
    15181 actcacacca gaaatatcta gtcctcttgc tgctacatca gtagcgacta aaatattaat
    15241 ttggtcattt ttaaatttct ttaatacttc taaacgtttc gcttgtgtaa tatcaccatg
    15301 taaaccttca gctttatatc ctttagaaat caaagcactt gttaattcat caacacgacg
    15361 ttttgtacgt ccgaatacga ttgctaattc aggttgatga acatctagga aatttgtaaa
    15421 tgtatcaaat ttctctaatt ctttaacaat tgtatagaat tcttcgattt gtggatcaga
    15481 catttcatta ttcattgtct taatgatttt tggtgatttc ataaattgtt gtactaaagc
    15541 ttggattgct ttaggcattg tagctgagaa caacattgtt tgacgttgta ctgctggaat
    15601 tttatccata ataaatctca tatcatcgat gaatcccata ttcatcattt catcagcttc
    15661 atctaaaatc aaagtatgaa ttccgtccgt ttttaatgtg cgacgattta aatggtcgat
    15721 aacacgccca ggtgttccga ctacgatttg tgggcctttt ttcaaggctt taatttggcg
    15781 ttcgataggc ataccaccga atacagtaac aacttggaca ccttgtccac ggctaaattc
    15841 tcttaattgt tcagctacct gcattgccaa ttctcttgta ggtgctaaaa tcaacgattg
    15901 aaccccttgt ttccctacta ctttctcaat taaaggaata ccgaatgctc ctgttttacc
    15961 tgtaccggtt tgagcttgcc caaggatatc aattccttgt aacgcataag ggatactgtc
    16021 tttttggata ggtgtcggct ctttaaatcc cattgattca agtgactgaa ccgtattatc
    16081 cgaaatccct agttctttaa aattttgcaa aataattctc ctttttacct gtttatttct
    16141 caatatactt ttgcatataa gttcatta
//
LOCUS       DAMQWL010000053        16096 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.053, whole genome shotgun sequence.
ACCESSION   DAMQWL010000053 DAMQWL010000000
VERSION     DAMQWL010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 16096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16096
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.053"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            134..778
                     /locus_tag="PF788_001520"
     CDS             134..778
                     /locus_tag="PF788_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HDG6303784.1"
                     /translation="MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDP
                     LEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGN
                     ARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDF
                     KGFQKKIMYCFNKINAKAQKNHQKPQNKTNIEKSKQIKPKQYNQTKNHQQQKKN"
     gene            894..1760
                     /locus_tag="PF788_001521"
     CDS             894..1760
                     /locus_tag="PF788_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDG6303785.1"
                     /translation="MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFG
                     VDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIG
                     QTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFND
                     DHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKEWYNDNLEQDYHATITVDQVATCKE
                     MLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFV
                     NLMASFVEQPKA"
     gene            2030..3250
                     /locus_tag="PF788_001522"
     CDS             2030..3250
                     /locus_tag="PF788_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter"
                     /protein_id="HDG6303786.1"
                     /translation="MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGM
                     TTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTI
                     WLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPF
                     IGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKD
                     KTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILG
                     VLSSRLQTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQ
                     DILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFF
                     TKNQKITKEDVIST"
     gene            3247..3735
                     /locus_tag="PF788_001523"
     CDS             3247..3735
                     /locus_tag="PF788_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HDG6303787.1"
                     /translation="MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHN
                     QHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFG
                     IIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALL
                     IN"
     gene            complement(3834..4523)
                     /locus_tag="PF788_001524"
     CDS             complement(3834..4523)
                     /locus_tag="PF788_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 family protein"
                     /protein_id="HDG6303788.1"
                     /translation="MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDT
                     ELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVL
                     LIGIVSFLKGFLGFFMEKNGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNS
                     NWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIER
                     NISKKHSHTFL"
     gene            4650..5093
                     /locus_tag="PF788_001525"
     CDS             4650..5093
                     /locus_tag="PF788_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6303789.1"
                     /translation="MRTLNKDEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMI
                     CSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIA
                     LEKWAKTMNAKRISNTIHKNNLPMISLNKDLGYQVSHVKMYKDID"
     gene            5160..5555
                     /locus_tag="PF788_001526"
     CDS             5160..5555
                     /locus_tag="PF788_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303790.1"
                     /translation="MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDK
                     KEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKDKEASQDKQSK
                     DQTKSSDKDNHKKPTSADKDQKANDKHQS"
     gene            5693..5992
                     /locus_tag="PF788_001527"
     CDS             5693..5992
                     /locus_tag="PF788_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303791.1"
                     /translation="MHEQDFRILEGQDITLPELGRELENITGHTIADSTGEIKRVIAH
                     LPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK"
     gene            6072..6614
                     /locus_tag="PF788_001528"
     CDS             6072..6614
                     /locus_tag="PF788_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6303792.1"
                     /translation="MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRS
                     ELDMRTMDAVIKDYGIGLFAVEDKESHQWIGFIGLNYIPETSDYPFKELPLYEIGWRL
                     LPEFWGKGLATEGAKATLKLAEEHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELP
                     NLSKYHLLKRQVRYYINLRK"
     gene            complement(6710..7276)
                     /locus_tag="PF788_001529"
     CDS             complement(6710..7276)
                     /locus_tag="PF788_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HDG6303793.1"
                     /translation="MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIG
                     IMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFV
                     MAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYR
                     ALAPLCDTKESLIESILNFKPLGTRSYD"
     gene            complement(7278..7736)
                     /locus_tag="PF788_001530"
     CDS             complement(7278..7736)
                     /locus_tag="PF788_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HDG6303794.1"
                     /translation="MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPP
                     HVSTLYVDDGPDAVDYKIVQLSTKDDIVVTQDYGLASLLVDKVLIVMHHNGKIYNSKN
                     IQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEQSLLKVIHRIKELD"
     gene            complement(7739..8422)
                     /locus_tag="PF788_001531"
     CDS             complement(7739..8422)
                     /locus_tag="PF788_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303795.1"
                     /translation="MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKV
                     ASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKD
                     ADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKK
                     GDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQ
                     QNKENNTEA"
     gene            complement(8594..9469)
                     /locus_tag="PF788_001532"
     CDS             complement(8594..9469)
                     /locus_tag="PF788_001532"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HDG6303796.1"
                     /translation="MFIIELIKGIILGVVEGLTEFAPVSSTGHMILVDDMWLKSSEFL
                     GSQSAFTFKIVIQLGSVFAAAWVFRERFLEILHIGKHKHVEGDNDQQRRSKPRRLNLL
                     HVLVGMVPAGILGLLFDDFIEEHLFSVPTVMIGLFVGAIYMIIADKYSAKVKNPQTVD
                     QISYFQAFVIGISQAVAMWPGFSRSGSTISTGVLMKLNHKAASDFTFIMAVPIMLAAS
                     GLSLLKHYQDIQIADIPFYILGFLAAFTVGLIAIKTFLHLINKIKLIPFAIYRIVLVI
                     FIAILYFGFGIGKGI"
     gene            9682..11313
                     /locus_tag="PF788_001533"
     CDS             9682..11313
                     /locus_tag="PF788_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HDG6303797.1"
                     /translation="MKKLTTILFQYKIFPVLMFLVSTGLGIIVITQNILIADFLAKII
                     RHQFQGLWIVLFILLGVLLLRATVQFLNQWLGDTLAFKVKHMLRQRVIYKNNGHPIGE
                     QMTILTENIDGLAPFYKSYLPQVFKSMMVPLIIIIAMFFIHFNTALIMLITAPFIPLF
                     YIIFGLKTRDESKDQMTYLNQFSQRFLNIAKGLVTLKLFNRTEQTEKHIYDDSTQFRT
                     LTMRILRSAFLSGLMLEFISMLGIGLVALEATLSLVVFHNIDFKTAAIAIILAPEFYN
                     AIKDLGQAFHTGKQSEGASDVVFEFLEQPNYNNEFLLKYEENQKPFIQLTDISFRYDD
                     SDRLVLNDLNLEIFKGDQIALVGPSGAGKSTLTHLIAGVYQPTIGTISTNQRDLNIGI
                     LSQQPYIFSASIKENITMFKDIENNTIEEVLDEVGLLDKVQSFTKGINTIIGEGGEML
                     SGGQMRRIELCRLLVMKPDLVIFDEPATGLDIQTEHMIQNVLFQHFKDTTMIVIAHRD
                     NTIRHLQRRLYIENGRLIADDRNISVNITENGDDL"
     gene            11310..12983
                     /locus_tag="PF788_001534"
     CDS             11310..12983
                     /locus_tag="PF788_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding/permease
                     protein"
                     /protein_id="HDG6303798.1"
                     /translation="MKTRLKFQVDKDLLLAIVVGVCGSLVALAMFFLSGYMVTQSALG
                     APLYALMILVVTVKLFGFLRAITRYVERLISHKATFTMLRDIRVQFFGKLVNVIPNVY
                     RKLSSSDLISRMISRVEALQNIYLRVYYPPVVIGLTALVTVIVLAFISIGHALLIMVS
                     MLFTLLIVPWLSSKKARTLKKHAANEQARFLNHFYDYKAGMDELRRFNQINHYRDNLM
                     AKLNHFDKLQLKEQRFLTIYDFILNIIAMLSIFGSLVLGLIQINAGQLNIIYMTSIVL
                     MVLTLFEQAVPMTNVAYYKADTDQALHDINEVISVPSTNGKKRLNDKYDATNIYEVKD
                     ASFKYWNQQTYVLSDINFNVNRGEKIAIVGPSGSGKSTLLQIMAGLYQLDSGSVRFEN
                     MDMFEIDDKDKFESLNVLLQSQQLFDGTIRQNLFTDEKDEAVQAIFKQLDLEHLALER
                     QIDLDGHTLSGGEIQRLAITRMLLKDTASTWILDEPTTALDKQNSLKVMDLIEAHAET
                     LIVATHDLTLLSRFETIIVMINGKIVEKGNYQQLLANQGALWNMIQYNA"
     gene            complement(13110..13553)
                     /gene="mgrA"
                     /locus_tag="PF788_001535"
     CDS             complement(13110..13553)
                     /gene="mgrA"
                     /locus_tag="PF788_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MgrA"
                     /protein_id="HDG6303799.1"
                     /translation="MSDQHNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVL
                     TILWDESPVNVKKVVTELALDTATVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKS
                     ETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAFDETKEK"
     gene            13780..14706
                     /locus_tag="PF788_001536"
     CDS             13780..14706
                     /locus_tag="PF788_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HDG6303800.1"
                     /translation="MKNNKDEKIRISIINGFLGSGKTTLLTHYISELLKNDEKIKIIM
                     NEFGTFDIDSNSISNEIEVHSLINGCVCCDLKQELVYELKAIALKGDVNHVIIEATGI
                     AHPLELLVACQDPQIVNFFEKPIIYGVLDATRFLERHQYTENTVSLMEDQLKLSDMII
                     INKIDLITDDSLEKIDKQLGMICASIPTYKTTYGKVSLEELDLTVKDREISSHHHHHH
                     GIKSMTYTFTGPIDRHLFYQFIMKLPESVLRLKGYVSFRDQPNAIYEFQYAYGLPDYG
                     IIGMQLPLTIVIIGETLDTNHIRNQLDMLQFT"
     gene            14809..15717
                     /locus_tag="PF788_001537"
     CDS             14809..15717
                     /locus_tag="PF788_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HDG6303801.1"
                     /translation="MEQIMINHYVHFSRLVQGFWRANEWKMTAKELNYFINELVERGI
                     TTMDHADIYGDYQCESLFGNALDLSPELRNKIQIVTKCGIILPSKQFDFTNGHRYDLS
                     SKHIVKSVEQSLINLNVDYLDSLLIHRPSPLMDPEQVADALTKLVKQGKLKSFGVSNF
                     NHSQYQLLNQYIMKERLHISINQLELSPYHVDSLQDGTMDSMYQNHVQIMAWSPFAGG
                     KIFDKEDIKAQRIMKVVQSIADKYGVSDTAVMIAWLVKIPHRIMPILGTSQLKRIDQA
                     IEGLQLNLDDQSWFDIYTAIIVQDIP"
     gene            15752..16039
                     /locus_tag="PF788_001538"
     CDS             15752..16039
                     /locus_tag="PF788_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303802.1"
                     /translation="MTNEDKRFEQLRFERKFIVIPYLIYAVIVLLLNIFYSDLKITMT
                     LFGLFFAYNVVILFIAFVKHYKRTLLLSLILTVLSGAAFFGIIYVYGINHF"
BASE COUNT         5566 a         2275 c         2759 g         5496 t
ORIGIN      
        1 ttaagtaaat tgaagcgagt tgtagtaaaa taataataaa tattttcata tgattaacaa
       61 aaactataaa actgtatcat gacatgacat catttatgta gttttatata ataatgacaa
      121 ggagttggtg actgtgaaag taaagtatat agataaacgt cactggcgtc gcctaattga
      181 tagggaatac acagaggtaa aagttaataa taataggttt aagggtatta taggcttagt
      241 cacgatgaaa aaggttcgtg atcctttaga ggtgacggta gttggacaaa atatcattgt
      301 cgcagatgac aattataaat ggttgcaaat actacctgaa aagaaacgtt atagtataac
      361 tgtaatgttt gataataaag gcaatccatt agaatattat tttgatataa atatcaaaaa
      421 tataacgcaa aaaggtaatg cgcgtacagt agatttatgt ttagatgttt tagcattacc
      481 aagtggtgaa tatgagttgg tagatgaaga tgatttaatg tttgcattag aaagtgagca
      541 aattacaaaa aagcaatttc atgaagcata tatgattgca catcaaatta tggcagagtt
      601 agaaaatgat tttaaaggat tccaaaagaa aatcatgtac tgctttaata aaattaatgc
      661 aaaggctcaa aaaaatcatc aaaagccaca aaataaaact aatattgaaa aaagcaaaca
      721 aataaagcct aagcaatata atcaaactaa aaatcaccaa caacaaaaga aaaactaagt
      781 aattcaagct gcagccatac caataaaatt ggtgaaatta ttcgttagta atgaactcat
      841 gaatgcttgt agccatgaaa gttcaataat tgaataattt atggggggaa attatgaaga
      901 ttgaagacta tcgtttacta ataacattag acgaaacgaa aacgttacgt aaagcggctg
      961 aaattttata tatatctcaa cctgctgtta cacaaagact aaaagctatt gaaaatgctt
     1021 ttggagtaga tatttttatc agaacaaaaa aacaattgat tacaacaact gaaggaacaa
     1081 tgattattga gcatgctcgt gacatgttga aaagagagcg attatttttt gacaaaatgc
     1141 aggcacatat tggtgaagtg aatggaacaa tatcaatcgg gtgttcttct ttgattggac
     1201 aaaccttact tcctgaagtt ttgagcctat ataatgccca atttcctaat gttgaaatac
     1261 aagtgcaagt tggttcaact gaacaaatta aagcaaatca tagagattat catgttatga
     1321 taactcgtgg aaataaggta atgaatttag ctaacacaca tttatttaat gatgatcatt
     1381 attttatttt tccaaaaaat agacgagatg atgttacaaa gttaccattt atagagtttc
     1441 aagctgatcc gatttatata aatcaaataa aagaatggta taacgataat ttagaacaag
     1501 attaccatgc aactattaca gtggatcaag tagcaacttg caaagaaatg ttgattagtg
     1561 gtgtaggtgt tacaatcttg ccagaaatta tgatgaaaaa tatcagcaaa gaacaatttg
     1621 agtttgaaaa agtagaaatt gataatgaac cgctgattcg ttcgacattt atgagttatg
     1681 atccgagcat gttgcaattg ccacaagttg attcttttgt aaatctcatg gcgagctttg
     1741 ttgaacaacc aaaggcgtag ttttagacta atttaaggtt tgtatttaat tttaaactat
     1801 tcggttaaat tgaacgtagt tggttgctaa tgcaccaaca gcaaaagagc ccctaattaa
     1861 taaattaaaa ggggacaaag gaatacagtt ggttgctaat gcaccaactg cataagagcc
     1921 cctaattaat aaattaaaag gggacaaagg aatacagttg gatgctaacg caccaactgc
     1981 ataagagccc ctaattaata aattaaaagg ggctctaaga agcggggtta tggatatgtt
     2041 tgcagcgtta ttacaaataa agaattataa actctttgtt gctaatatgt ttctactagg
     2101 tatgggtatt gcggttacgg tcccatatct tgttcttttt gcaactaaag atttaggtat
     2161 gacaacaaat cagtatggat tacttctagc atctgcagcg attagccagt ttacagtaaa
     2221 ttcaattatt gctagatttt cggatacgca tcactttaat agaaaaatta ttattattct
     2281 cgcattatta atgggtgcgc ttggtttttc aatatacttt tttgtagata caatctggtt
     2341 attcatatta ctatatgcga ttttccaagg attatttgca ccagcaatgc cccaacttta
     2401 cgcatctgct agagaatcta tcaatgtttc aagctctaaa gatagagctc aatttgccaa
     2461 cacagtatta cgttcaatgt tctcattggg ctttttattt ggtccattta ttggtgccca
     2521 attaatcgga ttaaaaggct atgctggatt gtttggtgga acaataagta tcattttatt
     2581 tactttagta cttcaagtgt ttttctataa ggatttaaac attaaacacc ctattagtac
     2641 gcaacaacat gttgaaaaaa ttgctcctaa tatgtttaaa gacaaaacgc ttttattacc
     2701 atttattgca tttattttat tacacattgg acaatggatg tatacgatga atatgccttt
     2761 atttgttact gattatttaa aagaaaatga acaacatgtc ggttatttag ctagtttatg
     2821 tgctggttta gaagtgccat ttatgatcat tcttggcgtt ttatcatcta gattacagac
     2881 tcgaacattg ttgatttatg gagcgatttt tggtggttta ttctacttca gcattggggt
     2941 atttaaaaac ttctatatga tgttagcagg acaggtgttt ttagctattt tcttagcggt
     3001 tcttttagga attggtatta gttatttcca agatatctta ccagattttc caggatacgc
     3061 ttcaacacta ttttctaatg caatggttat tggacagtta ggcggtaacc tattaggtgg
     3121 tgctatgagt cactgggtag gtttggaaaa tgtatttttt gtatcagcag catcaatcat
     3181 gttaggtatg atacttatat tctttactaa aaatcaaaaa attacaaaag aggatgtgat
     3241 atcaacatga caattatttt atggctactt atcatcgctg ccttcatgtt agcatttgtt
     3301 gggttgatta agccgattat tccttctgtt ttagtattat gggttggctt tttaatctat
     3361 caatttggct ttcataatca gcatttatca tgggtgtttt atgtatctat ggcattgcta
     3421 acaatattaa ttttatgtgc cgacttttta gctaataaat attttgtgaa tcgcttcggt
     3481 ggttctaagt ttggagagta tgcagcttta attggtgtgg ttattggatg ttttgtttta
     3541 ccgccatttg gaattattat tatacctttt attttggtat tcatagttga attaatacaa
     3601 ggctattcat ttgaaagagc agttaaagta agtataggtt caatcgtagc atttttaaca
     3661 agtagtatag ctcaagcaat cattatgttt ataatgattg tatggttctt tatagatgct
     3721 ttattgatta attaataaaa agcttattgc aaaatatgtt tttcggtaac tgtaatttag
     3781 tgattttatc attaacagta ccaaattcgc atatgatgta ataagctttt tgtttataaa
     3841 aatgtatgag aatgtttttt cgaaatattt ctttcaatgc gtaatccaat aggcataact
     3901 ataaatgaaa atataataaa tacccaattg cttacctgaa tatatggtcc aaaggcaagt
     3961 aatgattgtg gaataaagaa tacatagaaa aatcctacaa ttagtagaat gattgctaaa
     4021 taggtgaata tccatatcca atttgaattg ttaaaacact gcagttgtat tgttttaaaa
     4081 ctaaaccata taaataaaaa gacaataaag aatccaacga ctactgaaaa cgggaatgaa
     4141 acaaaatata aattacttcc atttttttcc atgaaaaatc ctaaaaatcc tttgagaaaa
     4201 ctaacaatcc caattaatag aacgatgtgt tgatagatat atttaaaaat atttttaaat
     4261 gtttcattag gcatcgcttt tagttctttt attgcatgtg cttttgggtc gtgattgaaa
     4321 aaatctaagg ctaataaacc atgttgttct gcgcttaata attgtttgag tatacggtta
     4381 ataattaact ctgtatcatg agggttgacg cgaaagtcag agcgcatata agtcatataa
     4441 ttctcgaaga tttctctatc agtattgctt aatcttaatg atttaacatt attttctttt
     4501 gttaattgcg cagtactttt cattgttact taagcgctcc tttaaaaatg tttaattcca
     4561 aattaaaatg gaaatgattt tatagtatta ataaggtcaa tcatatcata ttaaacgcat
     4621 aaatataacg attaatattg gagaggaaaa tgaggacact taataaagat gaacataatt
     4681 atatcaagca aatagctaat atacatgaga cattattgtc gcaagtagag tccaactata
     4741 aatgtactaa actgagtatt gctcttaggt acgagatgat atgttcaaga ttagaacata
     4801 caaatgataa aatttatata tatgaaaatg aaggtcaatt aatagcgttt atttggggac
     4861 attttagtaa tgaaaaaagt atggttaaca ttgaactgct atatgttgaa ccacaatttc
     4921 gcaaactggg aatagctacg caactgaaga ttgcgcttga aaaatgggca aaaactatga
     4981 atgcaaagcg aataagcaat acaattcata aaaataattt gccaatgata tctttgaata
     5041 aagatttagg ttatcaagtg agtcatgtga aaatgtataa agatattgat tagaattagg
     5101 attatgttgc taattcatgt taaaattaaa aaagatttaa tgacgttaag gagttttata
     5161 tgaagaaatt aatcatcagt attatggcgg tcatgctatt tttaacaggt tgtggtaaaa
     5221 gtcaagagaa agccactctg gaaaaggata tcgataattt acaaaaagaa aataaagaat
     5281 taaaagacaa aaaagaaaag cttcaacaag aaaaagaaaa attagcagat aagcaaaaag
     5341 accttgaaaa agaagtgaaa gatttaaaac cttcaaaaga agataacaag gatgataaaa
     5401 aagacgaaga caaaaataaa gacaaagata aagataaaga ggcatcacaa gataagcaat
     5461 caaaagatca aactaagtca tcggataaag ataatcacaa aaagcctaca tcagcagata
     5521 aagatcaaaa agctaatgac aaacaccaat cataatcgaa ttgcttactt gttatagatg
     5581 aaaggtacag cgttttaaac cttattttaa gggtatgtat taattaaaat gtggtcatga
     5641 ttgaaacaga acgtaaaaat agacaacgta attaataaag gagagaaacg gcatgcatga
     5701 acaagatttt agaattttag agggtcaaga tattactttg ccagaattag gtagagaatt
     5761 agaaaatatt acaggacata cgattgctga ttctactggc gaaattaagc gtgtaattgc
     5821 acatttacca aactttgagt ccgatacaga tacttttgtt gctacatatc gtttaaacca
     5881 tcaacaagat tttatagatg caacttttac tgcgctgaaa tcagatagag cacgtttaaa
     5941 agaagtgcca gttcatgttg aacttataag ttatatttct aaatcaaaat aaactgctat
     6001 ctaaaacgca aagttgatca aaatatcgat tttgtgtttt ttattgagaa attatatagg
     6061 agtgtcaatc gatgatttat tgtgaaacag agcgtttaat attaagagac tggcatgaag
     6121 atgatctgtt accttttcaa aaaatgaatg cgaattatga cgtacgtaaa tattttccaa
     6181 gtttattgag ttatcgtcgt tcagaattag atatgagaac tatggatgcg gttattaaag
     6241 attatggcat tggattattt gctgtagaag ataaagagtc ccatcaatgg ataggcttta
     6301 taggtttgaa ttatattcca gaaacaagcg attatccatt taaagaatta ccgctttatg
     6361 aaataggttg gcgcttgttg ccagaatttt ggggaaaagg attagcaact gaaggcgcaa
     6421 aggcaacatt gaagttagca gaagaacatc aaatatacga tgtctatagt tttacagcag
     6481 aagcaaataa agcttcacaa cgtgtaatgg aaaaaattgg catgacagtg tatgatcatt
     6541 tcgaattacc caatctaagt aagtatcatt tattaaaaag gcaagtgcgc tattacatta
     6601 atcttcgaaa gtgaaaaatt tatacataag cgtaacaaac acccctaaca ttgtttagct
     6661 gatgataaca atattagggg tgtttgttta ttttttaacc ttagaatgat taatcgtatg
     6721 aacgagtacc cagaggtttg aaatttaata ttgattcaat taatgattcc ttagtgtcgc
     6781 ataacggtgc aagagcacga tacttaggat caataaaacc ttcctcaatc atatggtcaa
     6841 tcattgtttg tagtggattg aaaaagccat taatattata aatggcaata ggcttttcat
     6901 ggatacctat ttgagcccaa ctatacattt cgaaaaattc ttctagtgaa cctgcgccac
     6961 caggagccat gacaaatgca tctgcaagtt ctgccatttt atttttacgt tcatgcatag
     7021 aatcaactaa aattaattca gttaaacgtt ggcttgtgat ttcatgttca tctaacattt
     7081 taggcatgac gccaatagct ttgccgccat gatctaatac accatcttga atggcaccca
     7141 taatgccaat tgaccctgca ccaaatacta attcataacc ttgttcagca aaatatttac
     7201 ctaaatcgta tgctttttgt acatatgaag ggtcatgacc tttgcttgca ccacaataaa
     7261 ctgcgattcg tttcatgtta atccagctcc ttaattcgat gaatgacttt taatagtgat
     7321 tgttcaaaca ctttttgatc ttgctttgta aaaggtgggg gacctttgtg gcgaccacct
     7381 tgttttctaa tttgtgcatt catatatcgt ttatctaata gttgttgaat atttttggaa
     7441 ttgtatatct tcccattatg atgcatgaca attaagactt tgtcgactaa taaacttgcg
     7501 agtccataat cttgagtgac tacgatatca tccttcgttg ataattgaac aattttgtaa
     7561 tcaactgcat ctggtccatc atcaacatat aatgttgata catgtggagg atataattgg
     7621 ttcgaaaaat ggctgaagct ccgaataatt gtcacaaaaa tgcctgtctc agttgttaaa
     7681 tctataatag aatcaacaac aggacaagca tctccatcaa taataatatg tgtcacaatt
     7741 atgcctctgt attgttttct ttattttgtt gagaggcgct tttggcaaca taatctttat
     7801 attttttaaa tgacttgatg cgtgctttat cagcttcttg ttggcgtttt tgttcttctt
     7861 tgtgtcgttt ttcaatattt ttttgtaact ttttattcat tttagcgatt tctttgcgat
     7921 ttttttcagc tagtttatcg ccttttttct cagttttctc atctaattta ttaggtgtta
     7981 agcctgcttt ttcttcgtat ttttgtgatt ttttcatatc tttaatacgt tgtatttcat
     8041 tcttttcgcg ggctttttgc tcttctttat gacgcttttc gatatttttt tgaagtattt
     8101 tattcatttt atcagcgtct ttacgatttt gtttagctaa tttttcgcct tttttctcaa
     8161 tataggcagg atcatgttct ctagcaaact ttttaagttc acgtttattt tcaaaatctt
     8221 gttttttatc gccgacatat tctttaacat cactcgctgt gttactgatt gctgcagatg
     8281 tttttgaagc aactttactt gtagcatctg taactttttg tacgtccgga tgttgtttga
     8341 tacgtttacg ttcaacaatt aacggtacca atacaattgg taatacatta atcataaatt
     8401 tgatgacttt tttcttatcc atagatcttg cctccataat tactttatta attttacata
     8461 ccctatgata catcaatata aacgatgata gtagtgaatc actattaagt atttcagatg
     8521 ttttttaaaa gaagacaata aaaactgcca atcaagtgat tccttaattg acagtctata
     8581 ttttaaaagg aaattaaata cctttaccaa tgccaaatcc gaagtaaagt atagcaataa
     8641 agattactaa tacaattctg taaatggcaa atggaattag tttgattttg ttaattagat
     8701 gcaagaatgt tttgattgca attagtccaa cagtaaatgc agctaaaaag cctaaaatat
     8761 aaaaaggtat atcagcaatc tgaatatctt gataatgttt taataaagat aaaccactag
     8821 ctgctaacat aattggaaca gccataataa atgtaaagtc cgatgctgct ttatgattta
     8881 atttcattaa taccccagtt gaaattgttg agcctgaacg gctgaaacca ggccacatag
     8941 ctactgcttg agaaatacca attacaaatg cttggaaata actgatttga tctactgttt
     9001 gtgggttttt aactttagct gagtatttat cagcaataat catatagata gcacctacga
     9061 ataagccaat cataacagtt ggcacactaa ataaatgttc ttcgatgaaa tcatcaaata
     9121 gtaagcctaa aatacctgct ggcaccatac ccactaatac atgtaataaa tttaaacgtc
     9181 ttggctttga acgtctttgt tgatcgttat ctccttcaac atgtttgtgt ttaccaatat
     9241 gtaaaatctc taagaagcgt tcgcggaaca cccatgctgc tgcaaagacg gatcctaatt
     9301 ggatgacgat tttaaatgta aatgctgact gagaacctaa aaattcagat gattttaacc
     9361 acatatcatc aactaggatc atatgtccag tagaggaaac aggtgcaaat tctgttaatc
     9421 cttcgacgac ccctaagata atacctttta ttaattcaat gataaacata atgtacccac
     9481 tttcattact caatttaatt tatttaaata tcaaaattac catatcatga tagcatattc
     9541 atttaaagac atgctagtta taatactaga ctaaagatgt atatattcat tttcttttac
     9601 atgtaaaact acaatatttt attgagctat ttaatttgat tttaaggaaa accttttata
     9661 ataggtttag gtgatataat tgtgaaaaaa ttaacaacaa tactgtttca atataaaatt
     9721 tttccggtac tcatgttctt ggtcagtact ggtctcggca taatcgttat aacgcaaaat
     9781 attttaatag cagatttttt agctaaaatt ataagacatc aatttcaagg tttatggatt
     9841 gtattattta ttttattagg tgttttactt ttaagagcaa ctgtgcaatt tctaaatcaa
     9901 tggttaggtg atacattagc atttaaagtt aagcatatgc ttagacagcg ggttatttat
     9961 aaaaataatg gtcatccaat cggtgaacaa atgactatac tcacagaaaa cattgatggt
    10021 ctagcacctt tttataagag ttatttgcct caagtgttca aatcaatgat ggttccgctc
    10081 atcataatca ttgcaatgtt tttcatccat ttcaataccg cattaattat gttaataact
    10141 gcaccattta ttcctttgtt ttatattatt ttcggtttga aaacgcgaga tgagtcaaaa
    10201 gatcaaatga cttatttgaa tcaatttagt caacggtttt taaatattgc taaaggttta
    10261 gtgacgttaa agctatttaa tcgtacagag caaacagaga agcatattta cgacgatagt
    10321 actcagttta gaactttaac aatgcgcatt ttacgcagtg cttttttatc gggattaatg
    10381 ctcgaattta taagtatgtt aggtattgga ttggttgcat tggaagcaac gctaagctta
    10441 gtagtatttc ataatattga ttttaaaact gcggcaattg cgattatttt agcgcctgaa
    10501 ttttataatg caattaagga cttagggcaa gcgttccata ctggaaaaca aagtgaaggt
    10561 gccagtgacg ttgtgtttga gtttttagaa caaccgaact ataataatga atttctatta
    10621 aagtatgagg aaaaccaaaa gccatttatt cagttaacag acatatcatt tcgatatgat
    10681 gattctgata gattggtatt aaatgattta aatttggaaa tatttaaagg tgatcaaatt
    10741 gcacttgtag gtccaagcgg ggcaggtaaa tccactttga cacatcttat tgcaggtgtt
    10801 tatcagccaa caataggtac tataagtaca aaccagcgtg atttaaatat aggaatactt
    10861 agtcaacagc catatatttt cagtgcttct ataaaagaga atattacgat gtttaaagat
    10921 atagaaaata atactattga agaagtgcta gacgaagtag gtttattaga caaagtgcaa
    10981 tctttcacaa aaggcattaa cacaataata ggtgaaggag gcgaaatgtt atctggtgga
    11041 cagatgagac gcatagaact ttgccgtctt ttagttatga agccagatct cgttatattt
    11101 gatgagcctg caactggttt agatattcaa acagaacaca tgattcagaa cgttctgttt
    11161 caacatttta aagatacaac gatgattgtc attgcacata gagataatac aattcgccat
    11221 ttacaacgac gcttgtatat agaaaatgga agactgattg ctgatgatcg caatatttca
    11281 gtaaatataa cagaaaatgg tgatgactta tgaaaacacg actaaaattt caagtagata
    11341 aggatttatt gttagctata gttgttggtg tttgtggaag tttagttgcg ctcgccatgt
    11401 ttttcttaag tggttatatg gtgacacaaa gtgcacttgg tgcgccacta tacgctctga
    11461 tgattttagt cgttacagta aaattgtttg ggtttttaag agctattact cgatacgtag
    11521 agcgccttat ttctcataaa gctacattta caatgctacg tgatattcgg gtacagtttt
    11581 tcggtaaatt agtaaatgtc attcctaatg tttaccgtaa actgagttct agtgatttaa
    11641 tttcacgtat gattagtcgt gttgaggcat tacaaaatat atatttacgt gtttattatc
    11701 caccagtcgt catcggtttg acagcgctag ttacagtcat agttttggcg ttcatttcaa
    11761 tcggccatgc gctattgatt atggttagca tgttgttcac tttactcatt gttccttggt
    11821 taagctcaaa aaaagcacgt actttaaaga aacatgcagc taatgaacag gcccgatttt
    11881 taaatcattt ttatgattat aaagctggta tggatgaact acgtcgattt aatcaaatta
    11941 atcattatcg agataatttg atggctaaat taaatcattt tgataaatta caacttaaag
    12001 agcaacgctt tttaacgatt tatgatttta tattaaatat tattgctatg ctttcgattt
    12061 ttggtagttt agttctagga ttaattcaaa ttaatgcagg ccaactaaat attatttata
    12121 tgacgagtat agttttaatg gtcttaactt tatttgaaca agctgtacca atgacaaatg
    12181 tcgcgtatta taaagcggat actgaccaag cattgcacga tattaatgaa gtgatatctg
    12241 taccttctac taatggaaaa aaacgtctta atgataagta tgatgcaacg aacatttatg
    12301 aagttaagga tgctagtttt aagtattgga atcagcaaac gtatgtgttg tcggatatta
    12361 attttaatgt taatagaggc gaaaagattg cgattgtggg tccttctggt tcaggaaaaa
    12421 gtacattact acaaattatg gcagggttat atcaattaga tagtggctct gttcgtttcg
    12481 aaaatatgga tatgtttgaa atagatgaca aagataagtt tgaatcgtta aatgtcttgc
    12541 tacaatctca acaattattt gatggtacaa tacgtcaaaa tttatttacc gatgaaaaag
    12601 atgaagcggt gcaagcaata tttaagcaat tagatttaga acatttggca ctagaacgtc
    12661 aaattgactt agatggtcat acattatctg gcggagaaat tcagcgttta gcgattacga
    12721 ggatgttatt aaaagatact gcatcaacat ggattttaga tgaaccaaca actgcattag
    12781 ataaacaaaa tagtttaaaa gttatggatt taattgaagc acatgcagaa acattaattg
    12841 ttgctacaca cgatttaact ttattgtcac gttttgagac catcattgtg atgataaatg
    12901 gtaaaatagt tgaaaaggga aactatcaac aattactagc taatcaaggt gctttatgga
    12961 atatgattca atataatgca taaaaaaact gcttgatagg ctaagaaacc tttcaagcag
    13021 ttttttaact aacaagctta cgcgtgctaa ttgtttttct attcttaata aattctaaac
    13081 attactttaa ttgtcatgac aaaagttaat tatttttcct ttgtttcatc aaatgcatga
    13141 atgactttac ctaataagcg attaagttct ttaacttcat cttgcgataa agaagaagct
    13201 gaagcgactt tgtcagatgc attacttaat tctggtctaa tagtttcact tttgtcagtc
    13261 aagtgaataa atacttcacg ttgatcgact tcggaacgtt cacgcttaat taagtctact
    13321 tgttccattc gttttaataa tggtgatact gtagcagtat cgagtgctaa ttcagttacg
    13381 actttcttga cgtttacagg agattcatcc cataaaattg ttaagacaag aaattgtggg
    13441 tatgttagat tgtacttctt aaaaactttg ttagagtagt agcgattaac ttgtctttga
    13501 gcattgtaca aactaaagca tagctgttct tttaaattat gttgatcaga cattaaagtt
    13561 ctcctccaga catactatcc gtttttttct cttttcggat tggtaatcat taaaaagttg
    13621 attgtttatt aattcacaac tttctttgat tcaatgccat gctaaaatta aagtatgttt
    13681 aaagtttaga agatattttt gattaaatca agcaaaaaga taatttaata tatatgttat
    13741 catttttaaa aataactgta atagaaaaga gaatataaaa tgaaaaataa taaagatgaa
    13801 aaaataagaa tatccataat taacggattt ttgggtagtg gtaaaaccac gttactgaca
    13861 cattatatta gtgaattatt aaaaaatgat gagaaaatta aaatcatcat gaatgaattc
    13921 ggtacttttg atattgatag caatagtatt tcaaatgaaa ttgaagtcca ttcattgatt
    13981 aatggttgtg tttgttgcga tcttaaacaa gaacttgtct atgaactaaa agccattgct
    14041 ttaaaagggg acgttaatca tgtcatcata gaagcgacag gcattgcgca tcctttggaa
    14101 ttactagttg catgtcaaga tccgcaaatc gttaatttct ttgaaaagcc gattatttat
    14161 ggtgtattag atgcgactcg atttttagaa cgtcatcaat ataccgaaaa tacagtttcg
    14221 ctgatggaag atcagttgaa actaagtgac atgattatta ttaataaaat tgatcttata
    14281 actgatgaca gtcttgagaa aattgataag caattaggta tgatttgtgc aagtattcca
    14341 acttataaaa caacctatgg aaaagtttcg ttggaagaat tggacttaac tgttaaagac
    14401 agagagatat cgtctcatca tcaccatcat catgggatta aaagtatgac ttacacgttt
    14461 acaggtccga ttgatcgtca tttgttttat caatttataa tgaaattacc ggaatctgtt
    14521 ctacgtttga aaggttatgt gtcatttaga gatcaaccaa atgcaattta tgaatttcaa
    14581 tatgcatatg gtttaccaga ctatggaata attggcatgc aattaccatt aacgattgtt
    14641 attattggtg aaactttaga tacaaatcac atacgtaatc aattggatat gctacaattt
    14701 acgtaaatca gaaaatgtgt tgtttcaatt taacggaaat agcacattaa tttcttaata
    14761 cttttattgt gaatattttg tgacattgag ggatggagtg gatgagatat ggaacaaata
    14821 atgattaatc actatgttca tttttctagg cttgtacaag gtttttggcg tgcaaatgaa
    14881 tggaagatga ctgcgaaaga gttaaattat tttataaatg aattagttga acgtggaatt
    14941 acaacgatgg atcatgctga tatttatgga gattatcaat gtgaatcact gtttggtaat
    15001 gctttggatt tatcacccga attaagaaat aaaattcaaa ttgttacgaa atgtggtatc
    15061 attttgcctt ctaagcaatt tgattttaca aatggacatc gttatgattt gagtagtaag
    15121 cacatcgtga aatctgttga acagtcatta atcaatttga atgtagatta tttagatagt
    15181 ctactcattc atcgtccttc accattgatg gatccagaac aagttgctga tgcattaact
    15241 aaacttgtta aacaaggtaa gttgaagtca ttcggggtgt cgaattttaa tcattcacaa
    15301 taccaattgt taaatcaata tattatgaaa gaaagactac atattagcat caatcaatta
    15361 gaattatcgc catatcacgt tgatagttta caagatggaa caatggattc aatgtatcaa
    15421 aaccatgttc aaatcatggc ttggagtcct tttgcaggcg gtaaaatttt cgacaaggaa
    15481 gatattaaag cgcaacgtat tatgaaagtt gttcaatcaa tagctgacaa atatggtgtg
    15541 agtgacacag ctgtgatgat agcgtggtta gtaaaaatac cgcatcgtat catgccgata
    15601 cttggaacaa gtcagttaaa gcgtattgat caagcaatcg aagggctaca acttaattta
    15661 gatgatcagt cgtggtttga catttacacc gctattatcg tacaagatat tccgtaaact
    15721 tatttacttt taaatcataa aggagcatat catgacaaac gaagataaac gtttcgaaca
    15781 attaagattt gaacgcaaat ttatagttat tccgtattta atttatgcag tcattgtatt
    15841 actattaaat attttctatt ctgatttgaa aataacaatg acattattcg gacttttctt
    15901 tgcgtataat gtagtcattt tgttcatagc atttgttaaa cattataaac gcacattgtt
    15961 actaagtctt atattaacag tgcttagtgg cgcggcattc tttggaatta tttatgttta
    16021 tggcattaat catttttaaa cattaaaaag agactatcta caataatctc atttgcattt
    16081 tatctaacta agttta
//
LOCUS       DAMQWL010000054        15936 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.054, whole genome shotgun sequence.
ACCESSION   DAMQWL010000054 DAMQWL010000000
VERSION     DAMQWL010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 15936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15936
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.054"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1078
                     /gene="scpA"
                     /locus_tag="PF788_001539"
     CDS             <1..1078
                     /gene="scpA"
                     /locus_tag="PF788_001539"
                     /EC_number="3.4.22.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cysteine protease staphopain A"
                     /protein_id="HDG6303803.1"
                     /translation="IKAKDKKHVQVNVEDKSVPTDVRNLAQKDYLSYVTSLDKIYNKE
                     KASYTLGEPFKIYKFNKKSDGNYYFPVLNTEGNIDYIVTISPKITKYSSSSSKYTINV
                     SPFLSKVLNQYKDQQITILTNSKGYYVVTQNHKAKLVLKTPRLEDKKLKKTESIPTGN
                     NVTQLKQKASVTMPTSQFKSNNYTYNEQYINKLENFKIRETQGNNGWCAGYTMSELLN
                     ATYNTNKYHAEAVMRFLHPNLQGQRFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNE
                     VDNLTKNNKGIAVLGSRVESRNGMHAGHAMAVVGNAKLDNGQEVIIIWNPWDNGFMTQ
                     DAKNNVIPVSNGDHYRWYSSIYGY"
     gene            1109..1435
                     /locus_tag="PF788_001540"
     CDS             1109..1435
                     /locus_tag="PF788_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphostatin A"
                     /protein_id="HDG6303804.1"
                     /translation="MEQIELFSIDKFKCNSEAKYYLNIIEGEWHPQDLNDSPLKFILS
                     TSDDSDYICKYINTEHKQLTLYNKNNSSIVIEIFIPNDNKILLTIMNTEALGTSPRMT
                     FIKHKS"
     gene            complement(1727..1900)
                     /locus_tag="PF788_001541"
     CDS             complement(1727..1900)
                     /locus_tag="PF788_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NETI motif-containing protein"
                     /protein_id="HDG6303805.1"
                     /translation="MKFKVNENETIADCLSRMKMQGYMPVKRIEKPVFQEQKDGTVEV
                     SHQEIVFVGKKIQ"
     gene            complement(1881..2483)
                     /locus_tag="PF788_001542"
     CDS             complement(1881..2483)
                     /locus_tag="PF788_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2179 domain-containing protein"
                     /protein_id="HDG6303806.1"
                     /translation="MSFVTENPWLMVLTIFIINICYVTFLTMRTILTLKGYRYIAASV
                     SFLEVLVYIVGLGLVMSNLDHIQNIIAYAFGFSIGIIVGMKIEEKLALGYTVVNVTSA
                     EYELDLPNELRNLGYGVTHYAAFGRDGSRMVMQILTPRKYERKLMDTIKNLDPKAFII
                     AYEPRNIHGGFWTKGIRRRKLKDYEPEELESVVEHEIQSK"
     gene            complement(2754..3575)
                     /gene="nadE"
                     /locus_tag="PF788_001543"
     CDS             complement(2754..3575)
                     /gene="nadE"
                     /locus_tag="PF788_001543"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HDG6303807.1"
                     /translation="MSKLQDVIVQEMKVKKRIDSAEEIMELKQFIKNYVQSHSFIKSL
                     VLGISGGQDSTLVGKLVQMSVNELREEGIDCTFIAVKLPYGVQKDADEVEQALRFIEP
                     DEIVTVNIKPAVDQSVQSLKEAGIVLTDFQKGNEKARERMKVQFSIASNRQGIVVGTD
                     HSAENITGFYTKYGDGAADIAPIFGLNKRQGRQLLAYLGAPKELYEKTPTADLEDDKP
                     QLPDEDALGVTYEAIDNYLEGKPVTPEEQKVIENHYIRNAHKRELAYTRYTWPKS"
     gene            complement(3568..5037)
                     /locus_tag="PF788_001544"
     CDS             complement(3568..5037)
                     /locus_tag="PF788_001544"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500623.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDG6303808.1"
                     /translation="MYQLEDDSLMLHNDLYQINMAESYWNDNIHEKMAVFDLYFRKMP
                     FNSGYAVFNGLKRVIDFIEHFGFSESDLEYLKSIGYKDDFLSYLKDLKFTGSIRSMQE
                     GELCFGNEPLLRVEAPLIQAQLIETILLNIVNFHTLITTKASRIRQIASNDKLMEFGT
                     RRAQEIDAALWGARAAYIGGFDSTSNVRAGKLFGIPVSGTHAHAFVQTYGDEYVAFKK
                     YAERHKNCVFLVDTFHTLKSGVPNAIKVAKELGDKINFVGIRLDSGDIAYLSKEARRM
                     LDEAGFTETKIIASNDLDEETITSLKAQGAKVDSWGVGTKLITGYDQPALGAVYKLVA
                     IENEDGSYSDRIKLSNNAEKVTTPGKKNVYRIINKKTGKAEGDYITLENENPYDEQPL
                     KLFHPVHTYKMKFIKSFEAIDLHHNIYENGKLVYQMPTEDESREYLALGLQSIWDENK
                     RFLNPQEYPVDLSKACWDNKHKRIFEVAEHVKEMEEDNE"
     gene            5221..6297
                     /locus_tag="PF788_001545"
     CDS             5221..6297
                     /locus_tag="PF788_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide synthase oxygenase"
                     /protein_id="HDG6303809.1"
                     /translation="MLFKEAQAFIENMYKECHYETQIINKRLHDIELEIKETGTYTHT
                     EEELIYGAKMAWRNSNRCIGRLFWDSLNVIDARDVTDEASFLSSITYHITQATNEGKL
                     KPYITIYAPKDGPKIFNNQLIRYAGYDNCGDPAEKEVTRLANHLGWKGKGTNFDVLPL
                     IYQLPNESVKFYEYPTSLIKEVPIEHNHYPKLRKLNLKWYAVPIISNMDLKIGGIVYP
                     TAPFNGWYMVTEIGVRNFIDDYRYNLLEKVADAFEFDTLKNNSFNKDRALVELNYAVY
                     HSFKKEGVSIVDHLTAAKQFELFERNEAQQGRQVTGKWSWLAPPLSPTLTSNYHHGYD
                     NTVKDPNFFYKKKESNANQCPFHH"
     gene            6317..7111
                     /locus_tag="PF788_001546"
     CDS             6317..7111
                     /locus_tag="PF788_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HDG6303810.1"
                     /translation="MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNFFEVIKAVADD
                     DTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVY
                     SIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIENGVAAIAPLGSGEAYGFTPIDTHI
                     EDYPHNVTRFLVIKNQQQFDQNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIE
                     SRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEMIGAFN"
     gene            7183..7290
                     /locus_tag="PF788_001547"
     CDS             7183..7290
                     /locus_tag="PF788_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303811.1"
                     /translation="MVDFLLFVLFLHDAAVYVSLPLVQAIANVTFYFSF"
     gene            complement(7301..8863)
                     /locus_tag="PF788_001548"
     CDS             complement(7301..8863)
                     /locus_tag="PF788_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDG6303812.1"
                     /translation="MAYFNQHQSMISKRYLTFFSKSKKKKPFSAGQLIGLILGPLLFL
                     LTLLFFHPQDLPWKGVYVLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQV
                     SSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSKILLGFMVATGFLS
                     MFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGT
                     LIGTPPLIILKGQYMQHFGYEISFAKWMIVGIPTVIVLLGITWLYLRYVAFRHDLKYL
                     PGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFLLKKWEVTSSVADGTIAI
                     FISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGE
                     QLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAP
                     AAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIV
                     LGIDINQPLPLK"
     gene            complement(9068..10165)
                     /locus_tag="PF788_001549"
     CDS             complement(9068..10165)
                     /locus_tag="PF788_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pectate lyase"
                     /protein_id="HDG6303813.1"
                     /translation="MYINMKDYGLTGINKTKDTRAIQRALNRGRCKPTTVYIPKGTYD
                     ICKPLTIYGNTTLLLDNETILRRCHSGPLLKNGRRFGFYRGYNGHSHIHIKGGKFDMN
                     GVSYPYNNTAMCIGHAEDIQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSG
                     ERFYSEAIQLDIQVPGAFPKFGTTDGTITKNVIIEDCYFGPSELPEMGSWNRAIGSHA
                     SRHNRYYENIHIRNNIFEDIQGYALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNA
                     ADVMTGKDLGSQAGINMNIIGNEFKGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQ
                     SIHLEDIDTVFLSPVEAGIQVTTINVDEIKK"
     gene            10537..11097
                     /locus_tag="PF788_001550"
     CDS             10537..11097
                     /locus_tag="PF788_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDG6303814.1"
                     /translation="MTHRALLVVDYSYDFIADDGLLTCGKPGQNIEDFIVSRINDFNY
                     YQDHIFFLMDLHYLHDIHHPESKLFPPHNIVDTSGRELYGKVGKLYETIKAQPNVHFI
                     DKTRYDSFFGTPLDSLLRERSINQVEIVGVCTDICVLHTAISAYNLGYKISVPAEGVA
                     SFNQKGHEWALAHFKNSLGAEVEQHV"
     gene            11150..12079
                     /locus_tag="PF788_001551"
     CDS             11150..12079
                     /locus_tag="PF788_001551"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HDG6303815.1"
                     /translation="MAKTYIFGHKNPDTDAISSAIIMAEFEQLRGNSGAKAYRLGDVS
                     AETQFALDTFNVPAPELLTDDLDGQDVILVDHNEFQQSSDTIASATIKHVIDHHRIAN
                     FETAGPLCYRAEPVGCTATILYKMFRERGFEIKPEIAGLMLSAIISDSLLFKSPTCTQ
                     QDVKAAEELKDIAKVDIQKYGLDMLKAGASTTDKSVEFLLNMDAKSFTMGDYVTRIAQ
                     VNAVDLDEVLNRKEDLEKEMLAVSAQEKYDLFVLVVTDIINSDSKILVVGAEKDKVGE
                     AFNVQLEDDMAFLSGVVSRKKQIVPQITEALTK"
     gene            complement(12274..12447)
                     /locus_tag="PF788_001552"
     CDS             complement(12274..12447)
                     /locus_tag="PF788_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303816.1"
                     /translation="MNVVAVNFKWSFELYMLKVENRAMNRVHNNIYNFNHNEKGRKKT
                     KIYTQHRKYFKKM"
     gene            12499..13878
                     /locus_tag="PF788_001553"
     CDS             12499..13878
                     /locus_tag="PF788_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDG6303817.1"
                     /translation="MNIIEQKFYDSKAFFNTQQTKDISFRKEQLKKLSKAIKSYESDI
                     LEALYTDLGKNKVEAYATEIGITLKSIKIARKELKNWTKTKNVDTPLYLFPTKSYIKK
                     EPYGTVLIIAPFNYPFQLVFEPLIGAIAAGNTAIIKPSELTPNVARVIKRLINETFDA
                     NYIEVIEGGIEETQTLIHLPFDYVFFTGSENVGKIVYQAASENLVPVTLEMGGKSPVI
                     VDETANIKVASERICFGKFTNAGQTCVAPDYILVHESVKDDLITALSKTLREFYGQNI
                     QQSPDYGRIVNLKHYHRLTSLLNSAQMNIVFGGHSDEDERYIEPTLLDHVTSDSAIMQ
                     EEIFGPILPILTYQSLDEAIAFIHQRPKPLSLYLFSEDENATQRVINELSFGGGAIND
                     TLMHLANPKLPFGGVGASGMGRYHGKYSFDTFTHEKSYIFKSTRLESGVHLPPYKGKF
                     KYIKAFFKN"
     gene            complement(13998..15026)
                     /locus_tag="PF788_001554"
     CDS             complement(13998..15026)
                     /locus_tag="PF788_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HDG6303818.1"
                     /translation="MTNGYIGSYTKKNGKGIYRFELNENQSRIDLLETGFELEASTYL
                     VRNNEVLYGINKEGEQCGVASLKIDDNGELHLLNKCLSSKAGTGCYVSISEDKRYLFE
                     AVYGAGIIRMYELNTHTGEIIRLIQELAHDFPTGTHERQDHPHAHYINQTPDGKYVAV
                     TDLGADRIVTYKFDDNGFEFYKESLFKDSDGTRHIEFHDNGKFAYVVHELSNTVSVAE
                     YNDGKFEELERHLTIPENFDGDTKLAAVRLSHDQQFLYVSNRGHDSIAIFKVLDNGQH
                     LELVTITESGGQFPRDFNIASSDDLLVCAHEQGDSVVTVFERNKETGKITLCDNTRVA
                     SEGVCVIF"
     gene            15296..15697
                     /locus_tag="PF788_001555"
     CDS             15296..15697
                     /locus_tag="PF788_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YolD-like family protein"
                     /protein_id="HDG6303819.1"
                     /translation="MTSYEEETDYRNVPRELLDNNIPMGRGMIKWAPFATLPEQFETI
                     QQYIIDQNKITRPVLSDDQLAELNIRLHEALQYAQPVEVKFYNNGFVDSVRLTIYRID
                     AINYEIDGYVYNQQQRQKISIFDILDIVLLP"
     gene            complement(15715..15923)
                     /locus_tag="PF788_001556"
                     /pseudo
     CDS             complement(15715..15923)
                     /locus_tag="PF788_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277741.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         5377 a         2789 c         2348 g         5422 t
ORIGIN      
        1 tatcaaagca aaagataaga agcatgtgca agttaatgtc gaggacaaga gtgttcctac
       61 tgacgtacgt aatttagcgc aaaaagacta tctttcttat gttacttcac ttgataaaat
      121 ctataataaa gagaaagcct cgtatacact tggtgaacct tttaaaattt ataaattcaa
      181 caaaaagagt gatggtaatt attattttcc agttttgaac actgaaggta atatcgatta
      241 tatagttaca atttcaccaa aaatcactaa gtattctagt tcatcttcta aatacacaat
      301 caatgtttct ccatttttat ctaaagtctt aaatcaatat aaagatcaac aaattactat
      361 tttgacaaac tcaaaaggtt actatgtggt tactcaaaat cataaagcta aactagtact
      421 aaaaacacca cgtctagaag ataaaaagtt aaaaaagact gagagtatac ctactggcaa
      481 taatgtaacg caactaaagc aaaaagcttc tgtcactatg ccaactagtc aatttaaaag
      541 taataattat acttacaacg agcaatatat aaataaactt gagaatttca agataagaga
      601 aactcaaggt aacaatggtt ggtgtgcagg ctatacgatg tctgaattac taaatgcgac
      661 ttataatact aacaaatatc atgcagaagc tgtgatgaga tttttacacc caaacttaca
      721 aggacaacga ttccaattta ctggtttaac gccaagagag atgatttatt ttggacaaac
      781 tcagggaaga agtccacaac ttcttaatag aatgactaca tataatgaag ttgacaatct
      841 tactaaaaat aataaaggaa ttgctgtttt aggtagtaga gtagaatcaa gaaatggtat
      901 gcacgcaggg catgccatgg cagttgttgg gaacgctaaa ttagataatg gacaagaggt
      961 tataattata tggaatccat gggataatgg ttttatgact caagatgcta aaaacaatgt
     1021 tattccagta tccaatggcg accattatcg atggtattca tctatttatg gttattaaaa
     1081 tttgtatttt agaaaggtaa ataatattat ggaacaaatt gaattattta gtattgataa
     1141 attcaaatgt aattcagagg ctaagtatta tcttaatatt attgagggag aatggcatcc
     1201 tcaagattta aatgatagtc ctttaaaatt tattctcagt acctcagacg attctgatta
     1261 catttgcaaa tatataaata cagaacacaa acaactcaca ttatataata aaaataatag
     1321 ctcaattgtt attgaaatat ttataccaaa tgataataaa atactactaa caattatgaa
     1381 cacagaagct ttgggaactt ctcctagaat gactttcatt aagcataagt cataagacta
     1441 tctagatatg attaagtaaa ctattaatct tattaaaggt ctctaggaag aaaaaatttc
     1501 atgcgatgag attgttttag aaaaagcgac gatatatata atctaacaat aatttttaaa
     1561 atattaagaa cccccagcat atgctttata tagcttgctg ggggtttctc atacaatatg
     1621 gatcgagcat cttgcatgta taaacaaata ggctattcaa agtaaaatta ctcaaacttt
     1681 gaatagcctt tcctcttcaa atagtcttta tttaaattgg attatgttat tggattttct
     1741 tacctacaaa aacgatttct tgatgtgata cttcaaccgt gccatctttt tgctcttgaa
     1801 acacgggttt ttcaatacgt tttaccggca tatacccttg cattttcatt cgtgacaaac
     1861 aatcagcaat tgtttcattc tcatttactt tgaatttcat gttctactac actttccagt
     1921 tcttctggtt cataatcttt aagctttcta cgacgaatgc ctttagtcca gaatccacca
     1981 tgtatgtttc gaggttcata cgcaatgata aatgctttcg gatctaaatt ttttatcgta
     2041 tccatcaatt tacgttcata ttttcttggt gttaaaattt gcatcaccat acgactacca
     2101 tctctaccaa acgcagcata gtgcgtaacg ccatatccta aatttcgaag ttcattcggt
     2161 aaatctaact catattctgc tgaagttaca tttacaactg tataacctaa tgccagtttt
     2221 tcttctattt tcataccaac aatgatacct attgaaaaac caaatgcgta ggcaataata
     2281 ttttgaatat ggtctaaatt agacataacc aaacctaaac caacgatata aactaatact
     2341 tctaaaaaac taactgatgc agcaatataa cgataacctt tcaacgttaa aattgttcgc
     2401 atcgttaaaa acgttacata acaaatgtta atgataaata tagttagtac cattaaccat
     2461 ggattttctg ttacgaatga cataaggcgc cccactctct ttcaattaca ctttaaatac
     2521 caaactgctt caacctaacc ttaatgaatg catattaata taatatagta cgaaaactct
     2581 cataaataaa tagcgaattt gtcataaata aaaatttatt ctcaaatgaa catacttact
     2641 ttagttcata cactttcaat ttatacactg aagtagtcta gctgaatgtg gtttaatgtt
     2701 attaattcta actcatattt aatttaagtc acacgttaga agaaaaaatt aaattaggat
     2761 tttggccacg tgtatcttgt atatgcaagt tcacgtttgt gtgcatttcg tatataatga
     2821 ttttcaatta ctttttgttc ttctggcgta actggcttac cttctaaata attatcaatc
     2881 gcctcataag ttacacctaa tgcatcttca tctggaagct gtggtttatc atcttctaaa
     2941 tcagcagttg gcgttttttc atataattcc tttggcgcac caagatacgc taataattga
     3001 cgaccttgtc gtttattcaa accaaatata ggtgcgatat ctgcagcacc atcaccgtac
     3061 ttcgtataaa acccagttat attttcagct gaatgatctg ttcctactac aataccttgt
     3121 cggtttgaag caattgaaaa ttgtactttc atacgttcac gcgctttttc atttcctttt
     3181 tggaaatctg taagaacaat accggcttct tttaatgatt gcacactttg atcaactgca
     3241 ggcttaatat tgactgttac tatttcatct ggttcaatga atcgcaaagc ttgctcaact
     3301 tcatcagcat ctttttgaac tccataaggt aatttaactg caataaacgt acaatcaatg
     3361 ccttcttcac gtaattcgtt aacagacatt tgtactagtt ttccaactaa tgtagaatcc
     3421 tgtcctcctg aaatacctaa cactaaagat tttataaatg aatgtgattg tacataattt
     3481 tttataaatt gctttaattc cataatttct tcagcactat cgatacgctt tttcactttc
     3541 atttcttgta caataacgtc ttgtaattta ctcattatct tcttccatct ccttaacgtg
     3601 ttccgcaact tcaaaaatac gtttatgttt attatcccaa catgccttgc ttaaatcgac
     3661 tggatattct tgtggattca ggaaacgctt attttcatcc caaatagatt gtaatcctag
     3721 tgctaaatat tcacgtgatt catcttctgt tggcatttga tatactaatt taccattttc
     3781 ataaatatta tgatgcaaat caatggcttc gaaagatttt ataaatttca ttttataagt
     3841 atgcactgga tggaataatt ttaaaggttg ttcatcgtat ggattttcat tttccaaagt
     3901 aatataatcg ccttctgcct tacctgtttt cttgtttata atgcgatata catttttctt
     3961 acctggcgtc gtaacctttt cagcgttatt tgataattta atacgatcac tatatgaacc
     4021 atcttcattt tcaatagcta caagtttata tactgcacct aatgctggtt gatcgtatcc
     4081 tgtaatcagc tttgtaccaa cgccccaaga atctactttt gcaccttgtg ctttcaaact
     4141 cgtaatcgtt tcttcatcca aatcattaga cgcgataatt ttagtttcag taaatcctgc
     4201 ttcatcaagc atacgtcttg cctctttaga taaataagcg atatctccag aatctaatcg
     4261 aatacctaca aagttaattt tgtcacctaa ttcttttgca acttttattg catttggcac
     4321 gccagatttt aaagtatgga atgtatctac taggaacaca caatttttat gtctttcagc
     4381 atattttttg aaggcaacat attcgtctcc ataagtttgg acaaatgcat gtgcatgtgt
     4441 accagacaca ggtataccaa ataatttccc cgccctaaca ttacttgtag aatcaaagcc
     4501 cccgatgtaa gcagctctag cgccccacaa tgctgcatca atttcttgcg cacgacgtgt
     4561 accaaactcc attaatttat catttgatgc aatttgacga attctgctag cctttgttgt
     4621 aattaatgta tggaaattta caatgtttaa taaaattgtt tctattaatt gcgcttgaat
     4681 caatggtgct tctacgcgta acaatggttc gttaccaaag cataattcgc cttcttgcat
     4741 cgaacggatg ctgcctgtga attttaaatc ttttaaatat gataagaaat catccttgta
     4801 gccaatagac tttaaatatt ccaaatcaga ttctgaaaat ccaaaatgtt ctataaaatc
     4861 aatgacgcgt tttaaaccat taaaaacagc atagccacta ttaaatggca tttttctaaa
     4921 atacaaatca aatacagcca ttttttcatg aatattatca ttccaataac tttcagccat
     4981 atttatttga tataagtcat tatgtaacat taaactgtcg tcttctaatt ggtacacttg
     5041 tatctctcca atcgacctaa atattttctt acattttatc ataattcatt tttttatata
     5101 cataagagcc ccttaatttc catactttta attaaaatca accaacaatt taatgacata
     5161 tacataattt ttaagagtat tttaataatg tagactataa tataaagcga ggtgttgtta
     5221 atgttattta aagaggctca agctttcata gaaaacatgt ataaagagtg tcattatgaa
     5281 acgcaaatta tcaataaacg tttacatgac attgaactag aaataaaaga aactgggaca
     5341 tatacacata cagaagaaga acttatttat ggtgctaaaa tggcttggcg taattcaaat
     5401 cgttgcattg gtcgtttatt ttgggattcg ttaaatgtca ttgatgcaag agatgttact
     5461 gacgaagcat cgttcttatc atcaattact tatcatatta cacaggctac aaatgaaggt
     5521 aaattaaagc cgtatattac tatatatgct ccaaaggatg gacctaaaat tttcaacaat
     5581 caattaattc gctatgctgg ctatgacaat tgtggtgatc ctgctgaaaa agaagttaca
     5641 cgcttagcaa atcacttagg ttggaaagga aaaggtacta attttgacgt gttaccactg
     5701 atttaccaat tacctaatga gtcagttaaa ttttacgaat atcctacttc attaattaaa
     5761 gaagtaccta ttgaacataa tcattatcca aaattaagaa aattgaactt aaaatggtat
     5821 gcagtcccta tcatttccaa tatggactta aaaatcggtg gcattgtata tccaactgca
     5881 ccctttaacg gttggtatat ggtaactgaa attggcgtac gtaactttat tgatgattac
     5941 cgttacaatt tactagaaaa agttgcagat gcgtttgaat ttgatacact taaaaataat
     6001 tcatttaata aagatcgagc acttgttgaa ttgaactatg ctgtgtatca ttcctttaaa
     6061 aaagaaggcg tatcaattgt cgatcatttg accgctgcaa agcaattcga actattcgaa
     6121 cgtaacgaag cacaacaagg tcgtcaagtt accggaaaat ggtcttggct agcaccgcca
     6181 ttatctccaa cattgacgtc aaattatcat cacggatatg acaatacagt aaaagatcca
     6241 aactttttct ataaaaagaa agaatcaaat gctaaccagt gccctttcca tcattaagtt
     6301 agtagaggtg tagcatatgc aattatatta tttaggccct aaaggtacat tttcatattt
     6361 ggcttgtcgt cagtattttt ctgaaaatga agcaactttt caaccaaagt caaatttttt
     6421 tgaagtcatc aaggcagttg cagatgatga cacatcgatt ggtgttgtcc ctattgaaaa
     6481 ttctatagaa ggaacaatca acattgtggc agatgcactt gcacagcaag atgtctttgc
     6541 acacggtgaa atacgtttag atattaactt tgcattatat ggtaatggaa cagattccat
     6601 ttctgatatt aaaaaagtgt attctattgc accagcaatc agtcaaacaa caaattacat
     6661 acatcaacat caatttgact atgattatgt cgacagtaca attcaaagtt tgactaaaat
     6721 tgaaaatggc gttgcagcaa ttgcaccttt aggtagtggc gaagcttatg gttttacacc
     6781 tattgataca catattgaag actatccaca taacgtgaca cgttttttag ttataaaaaa
     6841 tcagcagcaa tttgatcaaa atgcgacatc attgatgttt ttaattacac caatgcatga
     6901 taaacctggg ttgttagcaa gtgtgcttaa tacatttgct ttgtttaata ttaatttatc
     6961 ctggattgag tctcgtcctt taaaaacaca attaggtatg tatcgatttt tcgttcaggc
     7021 tgattctgca attacaaccg atataaagaa agtcattgct attttagaaa ccttagattt
     7081 caaagtagaa atgattggtg cttttaatta aactttattt tctaggttct acaatttaaa
     7141 taaaataaag agtcaaccaa ggattaaaat aggaatccat ccttggttga ctttcttttg
     7201 tttgtattgt ttttacacga tgctgcggta tacgtttcgt taccactcgt ccaagcaatt
     7261 gctaatgtaa ccttttattt ttcgttctaa tctgcaatta ctatttcaat ggcagtggtt
     7321 gatttatatc aatacctaaa actataggca ttacataata cacgactaaa ataataatta
     7381 ttgcactgat taagtttacc cagaatccta ctgatgccat ttgtttgata gatattttac
     7441 cagaaccaaa gataattgca ttcggtggtg tccctactgg taacatgtat gcacagttag
     7501 ccgccatagc tgcaggtgcc ataagtagta atggatgcac tccaacagca acagacaacg
     7561 ttgctaaaat cggtaaaatc atcgttgcag ttgcagtatt agatgtcact tcagttaaaa
     7621 ataagacaaa gattgttatg acaattacaa taagaatcgg actaacacca tttaatgatt
     7681 tcaactgttc gcctaaccat tttgctaaac cactttcaga aatacctttc gctaatgcta
     7741 aaccgccacc aaataaaatt aatacacccc aagggagctc ttttgcaact tcccagtcaa
     7801 tgatacggcg atgtttttca gtatttttag ctggaataat aaataataat attgatataa
     7861 aaatagcaat cgtaccatct gcaacagatg acgtaacttc ccattttttc agaagaaact
     7921 ctcttgtaat ccataataag ctagcaagta caaagatagt ttgtactacc ttttcttcat
     7981 acttcatttt gccaagctcg tctaactttt gtttaattaa cgtctgacca ccaggtaaat
     8041 atttcaaatc atgtctaaac gcaacatatc ttaaatagag ccaagtaata cctaacaaaa
     8101 caatgaccgt tggaatccct acaatcatcc atttagcaaa actaatttca tatccaaaat
     8161 gttgcatgta ttgtcctttt aaaataatta atggcggggt tccgattaat gtacccaagc
     8221 caccaatcgt acctgcatag ccaattgcta aaactagaga tttttcaaac ttttgaatac
     8281 ttgtttgatt cgtattggct tcttgtaaat catgtgcttc cttaataatt gctaaaccaa
     8341 tcggaatcat aatcattaca gctgcagtgt tcgatacaaa catagataag aatcctgttg
     8401 ccaccatgaa tccaagtaat atttttgaag tgcttgcacc aatcaaatta ataattgtca
     8461 acgctactct cgtatgtaaa ttccatcttt ccattgcaat tgccaaaata aatccaccta
     8521 aaaacaaaaa gataatatca ttgccatatt cggatgatac ttgttctggt gtaagtatat
     8581 gacctaatgg taataacaca attggtaata agctcgttgc tgcaatagga attgcttcag
     8641 taatccacca agtcgcaatc cataaagtaa tcgctaaaac atagacgcct ttccaaggta
     8701 agtcttgtgg atgaaagaat aataatgtta ataggaaaag taatggacct aatattagtc
     8761 caataagttg tcccgcacta aacggtttct ttttctttga ttttgaaaag aatgttaaat
     8821 accttttcga tatcattgat tgatgttgat tgaaataagc cataaatttc cccctcatga
     8881 tgattatgac aagctacttc aactcactat attagagtat agaaagttgt ctatcttgta
     8941 ttatcattac cgtcaaaata ccccttttat cagataattg ggtttattat agcatattta
     9001 taccgtttta tgaatgcgct ttcaaaaatt atctactatt cttaatccta atgtcatgcg
     9061 aaacttttta cttttttatt tcatctacat tgattgtagt aacttgaata cccgcttcaa
     9121 caggacttaa aaacactgta tcaatatctt ctaaatgaat tgattgagtc gaattattga
     9181 atgtattccc aacgattaat acatctttat gtttaacatt attataatta cgtacatgta
     9241 tcgcatcttt agacattgat cctttaaatt catttccaat tatattcata tttatgcctg
     9301 cttgggaacc taagtctttt cctgtcatca catctgctgc atttttacca tctctaactc
     9361 ctaaatatct aatgccaccc tcacagttaa taaacttatt attaataatg aaagcatctt
     9421 tatacttcaa gggagttaat gcataacctt gtatatcttc aaatatatta tttctaatat
     9481 gaatattctc atagtatcga ttatgtctac ttgcatgtga gccaatagca cgattccaac
     9541 ttcccatttc gggcaattct gaaggtccaa aataacaatc ttcgataatg acatttttcg
     9601 ttatcgtacc atctgtcgtt ccgaattttg gaaaagcacc aggtacttga atgtctaatt
     9661 gtattgcttc agaataaaag cgttcgccac tatagtctat gaatccttca aatgaacagc
     9721 ttttaatata gagtccgtta atcccacaag catcaattgc atgaccactc actacattct
     9781 taatggtcac acctattaat tgaatatctt cagcatgccc aatgcacata gctgtattgt
     9841 tataaggata cgatacacca ttcatatcaa acttgccgcc tttaatatga atatgactgt
     9901 gtccattata accacgataa aaaccaaagc gacgaccatt ttttaataaa ggaccagaat
     9961 gacatcggcg taaaatagtt tcattatcta acaaaagtgt tgtattgcca tatatcgtta
    10021 atggtttgca aatatcatac gtccctttcg gtatataaac tgtcgttggt ttacatcttc
    10081 cacgatttaa cgcacgttgt attgctcgag tatctttagt tttgtttatg cctgttaacc
    10141 cataatcttt catattgata tacataaatc gtcatccttt gtctattttc taattactca
    10201 tatattaacc aattattcaa attataatcg tgttaggttg atttaacaga tagtcataaa
    10261 tctcgtgatg ccatctatta gcatttttat attcaaaaca tcaacacttg atattagttc
    10321 taagtttgtc acatttagta ttctattaca gctattttaa aactatcgca aaaacttctt
    10381 atattatttg ttgattgcgt gatttgctct tccaaaaaag ttgattaatc tatatactta
    10441 atctatattt atatattaac cattagggtt aaaaattact ctagcattta tgaatagatg
    10501 ggagtttatt ttattattat ataggagaga tgttgaatga cacatcgcgc actattagtt
    10561 gttgactatt catatgactt tatcgcagac gacggcttac taacatgcgg taaacctgga
    10621 caaaatattg aagattttat tgtttctcgt atcaatgact ttaattatta tcaagaccat
    10681 atattctttt taatggattt acattattta catgacattc atcatcctga aagtaaatta
    10741 ttcccaccac acaatatcgt agatacaagt ggtagagaat tatacggtaa agtaggtaaa
    10801 ttatacgaaa caattaaagc gcaacctaat gtacatttca ttgataaaac gcgctatgat
    10861 tcgttctttg gtaccccgct tgatagttta ttgagagaaa gaagtattaa tcaagtcgaa
    10921 atcgttggtg tatgtaccga tatttgcgtg ttacatacag caatttctgc atacaactta
    10981 ggttataaaa tttcagtacc tgctgaggga gtggcttcat ttaatcaaaa agggcatgaa
    11041 tgggcacttg cacatttcaa aaactcatta ggtgcagagg tagaacaaca cgtttaaatc
    11101 gtgctaaaat aattataaag aatacaattt acaagggaga tatttgacaa tggctaaaac
    11161 atatattttc ggacataaga atccagacac tgatgcaatt tcatctgcga ttattatggc
    11221 agaatttgaa caacttcgag gtaattcagg agccaaagca taccgtttag gtgatgtgag
    11281 tgcagaaact caattcgcgt tagatacatt taatgtacct gctccggaat tattaacaga
    11341 tgatttagat ggtcaagatg ttatcttagt tgatcataac gaattccaac aaagttctga
    11401 tacgattgcc tctgctacaa ttaagcatgt aattgatcat cacagaattg caaatttcga
    11461 aactgctggt cctttatgtt atcgtgctga accagttggt tgtacagcta caattttata
    11521 caaaatgttt agagaacgtg gctttgaaat taaacctgaa attgccggtt taatgttatc
    11581 agcaattatc tcagatagct tacttttcaa atcaccaaca tgtacacaac aagatgttaa
    11641 agcagctgaa gaattaaaag atattgctaa agttgatatt caaaagtacg gcttagatat
    11701 gttaaaagca ggtgcttcaa caactgataa atcagttgaa ttcttattaa acatggatgc
    11761 taaatcattt actatgggtg actatgtgac tcgtattgca caagttaatg ctgttgacct
    11821 tgacgaagtg ttaaatcgta aagaagattt agaaaaagaa atgttagctg taagtgcaca
    11881 agaaaaatat gacttatttg tacttgttgt tactgacatc attaatagtg attctaaaat
    11941 tttagttgta ggtgctgaaa aagataaagt tggcgaagca ttcaatgttc aattagaaga
    12001 tgacatggcc ttcttatctg gtgtcgtttc tcgaaaaaaa caaatcgtac ctcaaatcac
    12061 tgaagcatta acaaaataat actatattac tgtctaatta tagacatgtt gtatttaact
    12121 aacagttcat taaagtagaa tttatttcac tttcaatgaa ctgtttttta tttacgtttg
    12181 actaatttac aacccttttt caatagtagt ttttattcct ttagctaccc taacccacag
    12241 attagtgatt tctatacaat tccccttttg tctttacatt ttcttaaaat atttgcgatg
    12301 ttgagtataa atttttgttt tcttcctacc tttttcgtta tgattaaagt tataaatatt
    12361 attatgtaca cgattcatcg ctctattttc aactttcaac atatataatt cgaaagacca
    12421 tttaaaatta acggccacaa cattcaaatc aattaatcgc tttttccaaa ataatcatat
    12481 aaggaggttc ttttcattat gaatatcatt gagcaaaaat tttatgacag taaagctttt
    12541 ttcaatacac aacaaactaa agatattagt tttagaaaag agcaattaaa gaagttaagc
    12601 aaagctatta aatcatacga gagcgatatt ttagaagcac tatatacaga tttaggaaaa
    12661 aataaagtcg aagcttatgc tactgaaatt ggcataactt tgaaaagtat caaaattgcc
    12721 cgtaaggaac ttaaaaactg gactaaaaca aaaaatgtag acacaccttt atatttattt
    12781 ccaacaaaaa gctatatcaa aaaagaacct tatggaacag ttttgatcat tgcaccattt
    12841 aactatcctt ttcaactagt gttcgaacct ttaatcggtg ctattgcagc aggtaatacg
    12901 gcaattatta aaccatctga gttgacgcct aatgttgcac gagtgattaa acggttaatc
    12961 aatgaaacat ttgatgcaaa ttacattgaa gttattgagg gaggaattga agaaacgcaa
    13021 acgttaattc acttaccttt tgactatgtc ttctttacag gaagtgaaaa tgtaggcaaa
    13081 atcgtttatc aagctgccag cgaaaattta gttcctgtga cattagaaat gggcggtaaa
    13141 tctccagtca tcgttgatga aacagcgaat attaaagttg ctagtgagcg catttgtttt
    13201 gggaaattca ctaatgccgg ccaaacatgt gttgcaccag attacatttt agtacacgaa
    13261 tctgtaaaag atgatttaat cacagcccta tcaaaaacgt tgcgtgaatt ttatggtcaa
    13321 aatatacaac aaagtccaga ttatggccgc attgtaaacc ttaaacatta tcatcgtctg
    13381 acttcattac ttaacagtgc acaaatgaat attgtatttg gtggtcatag tgatgaggat
    13441 gaacgttata tagaaccaac attgttagat cacgttacaa gtgattcagc aattatgcaa
    13501 gaagaaattt ttggtcctat cttaccgatt ttaacgtatc agtcattgga tgaagcaata
    13561 gcctttattc accaaagacc aaaacctttg agtttatatt tatttagcga agatgaaaat
    13621 gctacacaac gtgtaataaa cgagctatca tttggcggcg gcgctattaa tgatacattg
    13681 atgcacctag cgaatcctaa attaccattt ggtggtgttg gcgcctcagg tatgggacgc
    13741 tatcatggta aatattcatt cgacactttt acacatgaaa aaagctacat tttcaaatct
    13801 acacgattag aatcaggtgt ccatttacca ccatataaag gtaaatttaa atacatcaaa
    13861 gctttcttta aaaattaatt tttgagacaa aaataaacca tgcttccata atttgatgtt
    13921 cttgaaaaca ataaatttca aggtatacac aaattttttg gaaacatggt tttcttttta
    13981 tcatgattaa ttaaagatta aaatatgaca catacacctt cagatgctac acgagtgtta
    14041 tcacatagcg taattttacc tgtttcttta tttctttcga aaacagttac aactgaatct
    14101 ccttgctcat gagcacaaac taaaaggtca tctgatgagg caatattaaa atctcttggg
    14161 aattgaccac cactttcagt aattgttact agttctaagt gttgaccatt atcaagaact
    14221 ttaaaaattg caatgctatc atgccctcta ttagatacat ataagaattg ttgatcatga
    14281 gataaacgca ctgctgcaag tttagtatct ccatcaaagt tttcaggaat tgttaaatga
    14341 cgctcgagct cttcaaattt accgtcatta tattctgcaa cactcacagt atttgataat
    14401 tcgtgtacga cataagcaaa ttttccatta tcatgaaatt caatatgtct tgtcccatca
    14461 ctatctttaa ataaagattc tttataaaat tcaaacccgt tgtcatcaaa tttataagta
    14521 acgatacgat cagcacctaa atctgttact gcaacgtact taccatctgg agtttgatta
    14581 atataatgtg cgtgtggatg atcttgtctt tcatgtgtac ctgttggaaa atcatgtgca
    14641 agttcttgaa ttagacgtat aatttcacct gtgtgcgtat ttaattcata catacgtatg
    14701 atgccagcac catataccgc ttcaaataaa tatcgtttat cttctgaaat cgatacataa
    14761 caacctgtac cagcttttga agacaaacat ttatttaata aatgcaattc accattgtca
    14821 tcaattttca aacttgcaac accgcattgt tctccttctt tgttgattcc atataaaact
    14881 tcattattac gcaccaaata tgtagacgct tctaattcaa atcctgtttc taataaatca
    14941 atacgtgact gattttcgtt taattcaaaa cgataaatcc ctttaccatt ctttttagtg
    15001 taagaaccaa tatatccatt tgtcattact tttacccctc catgttagtc ttattttcat
    15061 tttattaaat tttagctaga attaacaatc atttatcatt tccttaaagc taaaactatt
    15121 taactacttt aaaagaacta tttgctgtga tatgtcatta ttcgatttta attaatccct
    15181 cttttttact tacacgagca ttaattatta acgcgtttat gcttccacaa aatttttgtt
    15241 gcaaaataga acacatgttc gtataatgta attatcagat tggggtgaat taaggatgac
    15301 aagttatgaa gaagaaactg attatcgtaa cgttccaaga gaattactag ataacaatat
    15361 acctatggga agaggcatga ttaaatgggc tccttttgca acattacccg aacaattcga
    15421 aacgattcaa caatacatta tcgaccaaaa caaaattaca cgtcctgtat tatcagatga
    15481 tcaattggct gagctaaaca ttcggctaca cgaggcgcta caatatgccc aacctgtaga
    15541 agttaaattt tataataatg gctttgtaga ttcagtacgc ttaaccattt atcgtattga
    15601 tgctattaat tatgaaattg atggttatgt ttacaatcag caacaacgtc aaaaaatttc
    15661 tatctttgat atcttagata ttgtcttgtt accttaatgc tttgaacata attaaacaga
    15721 ttgagtatat gcatataaga tgatttttaa catcattttt ggatgatagg atgttgcgcc
    15781 acgatgatgt ctgaattcat cgaattcgct atcaggtatt gtttcaacaa tttcattaac
    15841 atatcgtgaa atatcatttt gagggattct aacagaagtt tctattggta gtgtagttgg
    15901 ggcatgttat aatttttata cataaggcac ctcgtt
//
LOCUS       DAMQWL010000055        15782 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.055, whole genome shotgun sequence.
ACCESSION   DAMQWL010000055 DAMQWL010000000
VERSION     DAMQWL010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 15782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15782
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.055"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(21..182)
                     /locus_tag="PF788_001557"
     CDS             complement(21..182)
                     /locus_tag="PF788_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303820.1"
                     /translation="MLLILELRFWNLEFGFRNSTFGIQNYNEWKILIIACLMTWFCSD
                     FYLMNCFFV"
     gene            complement(219..959)
                     /locus_tag="PF788_001558"
     CDS             complement(219..959)
                     /locus_tag="PF788_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HDG6303821.1"
                     /translation="MFNLKHDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGL
                     FDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLLFVDTMPNIVHDWIAKLERNQQS
                     LGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNVCHKSYTKSDVIDRTLKHCDNCGGA
                     IRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAAGLISHFKGDNLIIIN
                     KDRTPYDSDATLVIHDDMVSVVKSLMTE"
     gene            1165..1956
                     /locus_tag="PF788_001559"
     CDS             1165..1956
                     /locus_tag="PF788_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDG6303822.1"
                     /translation="MTHRLNKGGNFTLNKHERLDEIAKLVNKKGTIRTNEIVEGLNVS
                     DMTVRRDLIELENKGILTKIHGGARSNSTFQYKEISHKEKHTRQIAEKRFIAKKAASL
                     IEDGDTLFFGPGTTVELLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMR
                     HITEAFVGEMANAMLEKLRFSKMFFSSNAVNKGAVMTSTLDEAYTQQLALSNSIEKYL
                     LIDHTKVGKEDFTSFCQLNELTAVVMDYEDEEKVETIKTYIEVVD"
     gene            2324..2752
                     /gene="lacA"
                     /locus_tag="PF788_001560"
     CDS             2324..2752
                     /gene="lacA"
                     /locus_tag="PF788_001560"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacA"
                     /protein_id="HDG6303823.1"
                     /translation="MAIIIGSDEAGKRLKEVIKSYLLDNKYDVVDVTEGQEVDFVDAT
                     LAVAKDVQSQEGNLGIVIDAFGAGSFMVATKIKGMIAAEVSDERSGYMTRGHNNSRMI
                     TMGSEIVGDTLAKNVVKGFVEGKYDGGRHQIRVDMLNKMC"
     gene            2768..3283
                     /gene="lacB"
                     /locus_tag="PF788_001561"
     CDS             2768..3283
                     /gene="lacB"
                     /locus_tag="PF788_001561"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacB"
                     /protein_id="HDG6303824.1"
                     /translation="MKIALGCDHIVTDTKMRVSEFLKSKGHEVIDVGTYDFTRTHYPI
                     FGKKVGEQVVSGNADLGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNAN
                     VIGFGGRIIGELLMCDIIDAFINAEYKPTEENKKLIAKIKHLETSNADQADPHFFDEF
                     LEKWDRGEYHD"
     gene            3296..4228
                     /gene="lacC"
                     /locus_tag="PF788_001562"
     CDS             3296..4228
                     /gene="lacC"
                     /locus_tag="PF788_001562"
                     /EC_number="2.7.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
                     /protein_id="HDG6303825.1"
                     /translation="MILTLTLNPSVDISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR
                     VLAQVGEPVLASGFIGGELGQFIAKKLDHADIKHAFYNIKGETRNCIAILHEGQQTEI
                     LEQGPEIDNQEAAGFIKHFEQLLEKVEAVAISGSLPKGLNQDYYAQIIERCQNKGVPV
                     ILDCSGATLQTVLENPYKPTVIKPNISELYQLLNQPLDESLESLKQAVSQPLFEGIEW
                     IIVSLGAQGAFAKHNHTFYRVNIPTISVLNPVGSGDSTVAGITSAILNHENDHDLLKK
                     ANTLGMLNAQEAQTGYVNLNNYDDLFNQIEVLEV"
     gene            4232..5212
                     /gene="lacD"
                     /locus_tag="PF788_001563"
     CDS             4232..5212
                     /gene="lacD"
                     /locus_tag="PF788_001563"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HDG6303826.1"
                     /translation="MSKSNQKIASIEQLSNNEGIISALAFDQRGALKRMMAKHQTEEP
                     TVAQIEQLKVLVAEELTQYASSILLDPEYGLPASDARNKDCGLLLAYEKTGYDVNAKG
                     RLPDCLVEWSAKRLKEQGANAVKFLLYYDVDDAEEINIQKKAYIERIGSECVAEDIPF
                     FLEVLTYDDNIPDNGSVEFAKVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNMKYVEGF
                     AEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLC
                     GRATWSGAVQVYIEQGEDAAREWLRTTGFKNIDDLNKVLKDTATSWKQRK"
     gene            5234..5545
                     /locus_tag="PF788_001564"
     CDS             5234..5545
                     /locus_tag="PF788_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HDG6303827.1"
                     /translation="MNREEVQLLGFEIVAFAGDARSKFLEALTAAQAGDFAKADALIE
                     EGNNCIAEAHRAQTSLLAKEAQGDDIAYSVTMMHGQDHLMTTILLKDLMKHLLEFYKR
                     G"
     gene            5551..7263
                     /locus_tag="PF788_001565"
     CDS             5551..7263
                     /locus_tag="PF788_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDG6303828.1"
                     /translation="MMQKLIAQIEKGKPFFEKLSRNIYLRAIRDGFISAMPVILFSSI
                     FLLIAYVPNIFGFKWDKGMEAILMKPYNYTMGLVAFLVAGTTAKSLTDSFNRKLESTN
                     QINFISTMLAAMCGFLFLASDPAKDGGFLSAFMGTKGLLTAFLSAFVTVIVYNFCVKR
                     NITIKMPKEVPPNISQVFKDLIPFSAVIIILYALDLVIRNSFKSNVAEGILKLFEPLF
                     TAADGWIGVTIIFGAFALFWFVGIHGPSIVEPAIAAITYANIEANFKLLQAGEHADKI
                     ITSGTQMFIVTFGGTGATLVVPFMFMWMTKSKRNKAIGRASVVPTFFGVNEPILFGAP
                     LVLNPVFFIPFVLAPIVNVWIFKLFVEVLGMNSFSVNLPWTTPGPLGIIMGTGFGLWS
                     FVLAITLIVVDIIIYYPFLKVYDSEILDEEEGRKESNSDLKEKVAANFDTKKADSILA
                     ASGVSDDAAKASNITEQTNVLVLCAGGGTSGLLANALNKAAEEYHVPVKAAAGGYGAH
                     MDIMKEYQLIILAPQVASNYEDIKQDTDRLGIKLAKTQGAEYIKLTRDGQAALDFVQQ
                     QFEN"
     gene            7281..8693
                     /gene="lacG"
                     /locus_tag="PF788_001566"
     CDS             7281..8693
                     /gene="lacG"
                     /locus_tag="PF788_001566"
                     /EC_number="3.2.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-galactosidase"
                     /protein_id="HDG6303829.1"
                     /translation="MTKTLPEDFIFGGATAAYQAEGATNTDGKGRVAWDTYLEENYWY
                     TAEPASDFYNRYPVDLELSEKFGVNGIRISIAWSRIFPNGYGEVNPKGVEYYHKLFAE
                     CHKRHVEPFVTLHHFDTPEVLHKDGDFLNRKTIDYFVDYAEYCFKEFPEVKYWTTFNE
                     IGPIGDGQYLVGKFPPGIKYDFEKVFQSHHNMMVAHARAVKLFKDGGYKGEIGVVHAL
                     PTKYPFDPSNPEDVRAAELEDIIHNKFILDATYLGKYSRETMEGVQHILSVNGGKLNI
                     TDEDYAILDAAKDLNDFLGINYYMSDWMRGYDGESEITHNATGDKGGSKYQLKGVGQR
                     EFDVDVPRTDWDWMIYPQGLYDQIMRVVKDYPNYHKIYITENGLGYKDEFIESEKTVH
                     DDARIDYVRQHLNVIADAIIDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQE
                     RYPKKSAYWYKELAETKEIK"
     gene            8959..9828
                     /locus_tag="PF788_001567"
     CDS             8959..9828
                     /locus_tag="PF788_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000719336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6303830.1"
                     /translation="MKKIFVIITTLLAVAIIIGSIIMVVFSQRQAQTFKIQQQQFVKK
                     PIPTLFLHGFGGSANSEKFMVKQAEKRGVTKDIITAYVSKDGAVTFKGKLRKDAVNPI
                     VKIELENNRQGYLDKNAAWFKNVLTKLQSEYNFDKFNFVGHSMGNLTFAQYMMTYGND
                     KSLPQLNKQVNIAGTFNGVLNMNEDVNEITVDKDGKPSRMNQPYQQLRVLKDIYKGKG
                     IEVLNIYGDLKDGTHSDGRVSNSSSKSLKYLLGNSPKSYRESKYEGEPAQHSQLHENE
                     NVANELIDFLWKK"
     gene            10111..11112
                     /locus_tag="PF788_001568"
     CDS             10111..11112
                     /locus_tag="PF788_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HDG6303831.1"
                     /translation="MQNKQILFNKIPEGMPQEDTFKIEEIDTPKLESDGVLVQTLYIS
                     VDPYMRGRMTKADSYVQPFEIGKPIVSHVVAKVIDSTLADYKKGDVVVGMLPWRIINH
                     VQADQITKVPTTDVPLDLYLSVLGMPGQTAYHGLLDIGQPKAGDTVVVSAASGAVGSV
                     VGQIAKIKGCRVVGIAGGDKKVNYLTETLGFDAGIDYKKEDFAEALAQAVPDGIDVYF
                     ENVGGTVGDEVFKHLNRFARVPVCGAISSYNHPEADIGPRIQGTLIKKQVMMRGFLVS
                     EFANAFKEASEQLATWVQEGKIQSQVTIEDGFENAPHAFKNLFTGDNFGKQVIKVTE"
     gene            11346..12347
                     /locus_tag="PF788_001569"
     CDS             11346..12347
                     /locus_tag="PF788_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HDG6303832.1"
                     /translation="MKMIGFEKPFKLEEGNLFKVYEQRKPTPENDDILVKVNSISVNP
                     VDTKQRQMEVTQAPRVLGFDAIGTVEAIGPDVTLFSPGDVVFYAGSPNRQGSNATYQL
                     VSEAIVAKAPHNISANEAVSLPLTGITAYETFFDTFKISTNPAENEGKSVLIINGAGG
                     VGSIATQIAKRYGLTVITTASRQETTEWCEKMGADIVLNHKEDLVRQFKEIPLVDYIF
                     CTYNTDLYYNTMIELIKPLGHITTIVAFNEDQDLNALKLKSITFTHEFMFARPIHRTP
                     DMIKQHEYLEDITKNIESGHYQPTTTQVFEGLSPENLYQAHQLLEKQSMIGKLVINI"
     gene            12654..14216
                     /locus_tag="PF788_001570"
     CDS             12654..14216
                     /locus_tag="PF788_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDG6303833.1"
                     /translation="MKNKSVSLVFWVSLVICTIFVAFGAIFPKQLEKLTQNITTFIAL
                     HFSWYYLLLVLVILFVCVYILFSRYANITLGEEGEDPEFSLPSWFAMLFSAGMGIGLV
                     FWTTAEPISHAFKLTPIHKAGTQSAINDAMQFSFFHWGIHAWAVYGIVALVFAYFSFH
                     KGYPGLVSATLTPLLGEKAMRGPLGGAIDVLAVIATVTGVAATLGFGALQINEGLHFL
                     FNVPSNFTMQVILIVIATILFTWSAWSGIDKGIKTLSNINMLLAFVVLIGLFIVGPTL
                     YILNTFTNGLGNYIANFFSMSLRIPTGGQKFQWLQNWTIFYWAWWISWAPFVGIFIAR
                     VSKGRTIKEFILGVLFVPALVCFIFFAVFGASAIYLQDNHIADIAKAATETATFATLQ
                     HYPLGFVLSLITLLVIMIFFVTSADSATYVLGMLSSSGDINPKSFVKVSWGIIMALFA
                     IIMIYTGGTQAIQNLLIIAALPFSVVIIAMIWSLIKSLSEEKPRNSNKVLIKHRDPDI
                     LEYRSSKHIDEN"
     gene            14391..14927
                     /gene="amaP"
                     /locus_tag="PF788_001571"
     CDS             14391..14927
                     /gene="amaP"
                     /locus_tag="PF788_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline shock response membrane anchor protein
                     AmaP"
                     /protein_id="HDG6303834.1"
                     /translation="MKRLKNFILGLLIVVIVGFLLFMYIQDGRITEYQDYFLQFEWFQ
                     PLLISLAALLILIGLILVFSIFKPTHRKPGLYKDFDDGHVYVSRKAVEKTAFDTVAKY
                     DQVRQPNVVAKLYNKKNKSYIDIKTDFFVPNNVQVQSLTEAIRSDIKKNVEYFTEMPV
                     RKLEVNVRDQKTSGPRVL"
     gene            14940..15179
                     /locus_tag="PF788_001572"
     CDS             14940..15179
                     /locus_tag="PF788_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2273 domain-containing protein"
                     /protein_id="HDG6303835.1"
                     /translation="MANNHNQNGQDSTQQVINFLKVFKWRIVGFLAFLLIAILFLTLG
                     FWKTVLIIVLCLIGVGIGYMKDRKQDFMNFLNRWS"
     gene            15242..15751
                     /locus_tag="PF788_001573"
     CDS             15242..15751
                     /locus_tag="PF788_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HDG6303836.1"
                     /translation="MTVDNNKAKQAYDNQTGVNEKEREERQKQQEQNQEPQFKNKLTF
                     SDEVVEKIAGIAAREVKGILDMKGGLTDTFTNAFSSGNNVTQGVSVEVGEKQAAVDLK
                     VILEYGESAPKIFRKVTELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNEN
                     NNQERQGLQ"
BASE COUNT         5565 a         2328 c         3023 g         4866 t
ORIGIN      
        1 ttaaaagtag catcccaaca tcaaacaaaa aaacaattca tcaaataaaa atcgctacaa
       61 aaccaagtca ttaaacacgc aataattaaa attttccact cattataatt ctgaattcca
      121 aatgtcgaat tccgaaaacc aaactccaaa ttccaaaaac gcaactccaa aattaaaagc
      181 atttccctac cattcgggaa atgcttttta catactgatt actctgtcat taatgatttt
      241 acaacggaaa ccatgtcgtc atgtatgacc aaagtagcgt cgctatcata aggtgttcga
      301 tctttattga taataattaa attgtcgcct ttaaaatgtg atattaatcc tgcggcaggt
      361 tgtacaacga gtgatgaacc tagtacaaca agggtgtcag catgttcaat tttatttaat
      421 gcccttatga tggtaggttg atctaacatt tcaccgtata atacgatgtc cggtcgaatg
      481 gcaccaccac aattatcaca atgtttcaaa gttctatcaa taacatctga cttcgtataa
      541 gatttatgac atacattaca ataaaaacga tttaacgtgc catgtaattc atcaacatgt
      601 tgacttccag cgtctgagtg caaaccatcg atattttgcg tgatgacacc taaagattgt
      661 tgattacgtt ctaattttgc aatccaatca tgaacgatat tgggcatcgt atcgacaaat
      721 agtaagcgct tatggcagaa attgataaaa ccttcaggat catcttctaa ataatcacgg
      781 cttaacaagt attctggcga aagcccatct tttgaaattt catcaaataa gccacccatt
      841 gaacggaaat ctggaacgcc acttgcgaca gatacaccag cacctgtaaa aaatgtaata
      901 cgattcgaac tatctataat atgttttagt gtctctaaat catgtttcaa gttaaacacc
      961 ccatcaaaat aatgaatgat ttataacgtc ttttactttt attatagtat attcatttta
     1021 cgattatcaa aagcgcagtt taaacagttc tttttaaaaa tgaattatac atataatcga
     1081 acagttaaat tatattagtt tttacgcaat ttttattata gaataagcat gtatattaaa
     1141 attgatgtct aaacataaag gataatgacc catcgcctaa ataaaggagg caattttaca
     1201 ttgaataaac atgaacgttt ggacgaaatt gctaaactag tgaataaaaa gggcacgata
     1261 agaacgaatg aaatcgtcga aggtttaaat gtgtctgata tgacagttcg aagagattta
     1321 attgaattgg aaaataaagg gattttaacg aagattcatg gtggtgcacg cagtaattca
     1381 acatttcagt ataaagaaat atcgcataaa gaaaaacata cccgtcaaat tgcagaaaaa
     1441 cgatttatag ctaaaaaagc tgcatcatta attgaagatg gggatacttt gtttttcgga
     1501 ccaggaacaa cagtggaact attagcagaa gaagtcaatc atcatacgct cacaattatt
     1561 acgaattgtt tgccggtgta taaaattttg ttagaaaaac aaacagcaca ttttcgtgtc
     1621 tatttaattg gtggtgaaat gcgccatatt acagaagcat ttgtaggtga aatggcgaac
     1681 gccatgttgg aaaaactaag atttagcaag atgttcttta gtagtaacgc agtaaataaa
     1741 ggtgctgtga tgacatctac attagatgaa gcctatacgc aacaactggc actaagtaat
     1801 tcaattgaaa aatacttgtt aatcgatcat acgaaagttg gcaaagaaga ttttacatca
     1861 ttttgtcagt taaacgaatt gactgcagtg gtcatggact atgaagatga agaaaaagta
     1921 gaaacgatta aaacatatat tgaagtagtc gactaaatta aaagtataac tgcattgtta
     1981 aaatatgtat ctatatgctc ataagtgaat gtgaatttgc attcatttat gggctatttt
     2041 ttatgcaaat ttatgtcaac gggaacctcg acaaagtttt actacaattt cagacgaata
     2101 cctaattaaa acaacaccac aatatgaatg ttcacttatt gtttgaaaat acgtcataaa
     2161 caaacatatt ataaacatat tatgttgatt tattgtttgt ttatgtttat aatttaaacg
     2221 taatcaaatt gaaagccttt tctcaagatt ttcataacct acaaataaat atgtcacatt
     2281 ttaagaaagg tatttcaaaa ttaaagtaaa aaggagtctt attatggcga ttattattgg
     2341 ttcagatgaa gctggcaaac gattaaaaga agtcatcaaa tcatacttat tagacaataa
     2401 atatgatgtt gttgacgtaa cagaaggaca ggaagttgac tttgttgatg caactttggc
     2461 tgtagcaaaa gatgttcaaa gtcaagaagg taacttaggt attgttatcg atgcatttgg
     2521 tgcaggtagc tttatggttg ctacaaaaat caaaggcatg attgctgctg aagtatcaga
     2581 tgaacgctct ggatatatga ctagaggcca taacaattca agaatgatca ctatgggatc
     2641 tgaaattgtt ggagacacat tagcgaaaaa tgtcgttaaa ggttttgttg aaggtaaata
     2701 cgatggtggt agacaccaaa tccgcgtaga tatgcttaat aaaatgtgct aaggaggaaa
     2761 aattactatg aagattgcat taggatgcga ccatattgtt acagatacaa aaatgcgtgt
     2821 atctgaattt ttaaaatcaa aaggacatga agtcattgac gtaggaacat acgatttcac
     2881 aagaacacat tatccaattt ttggtaaaaa agttggcgaa caagttgtta gcggtaatgc
     2941 agacttaggt gtttgtattt gtggaacagg tgttggtatt aacaatgctg taaataaagt
     3001 acctggcgtt cgttcagcac tagtacgtga tatgacatca gcgttatacg ctaaagaaga
     3061 attaaatgcg aacgttattg gcttcggtgg acgtattata ggtgagttat taatgtgcga
     3121 tattatcgat gcatttatta atgctgaata taaaccaact gaagagaaca aaaaattaat
     3181 cgctaaaatt aaacatttag aaacaagcaa tgcagatcaa gctgatccac atttctttga
     3241 tgaattctta gaaaaatggg acagaggcga ataccacgat taagggacga cacatatgat
     3301 tttaacttta acattaaatc catccgttga tatttcatac ccattaacag cattgaaatt
     3361 agatgatgtt aatcgtgttc aagaagtaag taaaacagct ggtggtaaag gtttaaatgt
     3421 aacaagagta cttgcgcaag taggtgagcc agtccttgcg agtggtttta ttggcggtga
     3481 attaggtcaa tttattgcta aaaaattaga tcatgccgac atcaagcatg cattttataa
     3541 cattaagggt gaaacacgaa actgcattgc aattttacat gaagggcaac aaacagaaat
     3601 tttagagcag ggaccggaga ttgataatca agaggctgca ggatttatta aacattttga
     3661 acaattatta gaaaaagttg aagcagttgc tatttcaggt agcttaccta aaggattaaa
     3721 tcaagattat tatgcacaaa tcattgaacg atgccaaaac aaaggtgtgc ctgtgatatt
     3781 agattgctcg ggtgcaactt tgcaaacagt tttggaaaat ccatacaaac ctacagtcat
     3841 taaaccaaac atttctgaac tatatcaatt gcttaaccag ccacttgatg aaagtttaga
     3901 aagtttgaaa caggcagtgt cacaaccctt attcgaaggg attgagtgga ttattgtgtc
     3961 tttaggtgca caaggtgcat tcgctaagca caatcataca ttctatagag tgaatattcc
     4021 gacaataagt gtattaaatc cggttggttc aggtgattct acagttgctg gaattacttc
     4081 agcaattctt aatcatgaaa acgaccacga tttactaaaa aaagccaata ctttaggcat
     4141 gctgaatgca caagaagcac aaacaggtta tgtcaattta aataattatg atgatttatt
     4201 caatcaaatt gaagttttag aggtgtaaaa aatgtcaaaa tcgaatcaaa aaatcgcatc
     4261 aattgaacaa ttaagtaaca acgaaggtat catttctgca ttagcatttg accaacgtgg
     4321 tgctttaaaa cgcatgatgg caaaacatca aactgaagaa ccaactgtag ctcaaattga
     4381 acaattaaaa gtattagttg cggaagaatt aacacaatat gcatcttcaa ttttattaga
     4441 tcctgaatat ggtttaccag cttcagatgc acgtaacaaa gattgtggat tattacttgc
     4501 ttatgaaaaa actggatatg acgtaaacgc taaaggtcgt ttacctgact gtttagtaga
     4561 gtggtctgca aaacgtttaa aagaacaagg cgcaaatgct gttaaattct tactttacta
     4621 tgatgttgat gatgctgaag aaattaacat tcaaaagaaa gcatacattg aaagaatcgg
     4681 ttcagaatgt gttgcagaag atattccatt ctttttagaa gtattaacat acgatgacaa
     4741 cattcctgat aacggtagtg ttgaattcgc aaaagttaag cctagaaagg ttaacgaagc
     4801 aatgaaatta ttctcagaac cacgctttaa cgttgatgta ttgaaagttg aagtaccagt
     4861 aaacatgaaa tatgtagaag gctttgctga aggtgaagtg gtttatacaa aagaggaagc
     4921 ggcacaacac tttaaagatc aagatgcagc aactcattta ccatacattt acttaagtgc
     4981 tggtgtttct gcggaattat tccaagaaac tttaaaattt gctcacgaag ctggtgctaa
     5041 attcaacggg gtactttgtg gccgtgctac atggtctggt gctgttcaag tatacattga
     5101 acaaggtgaa gatgctgctc gtgaatggtt acgtacaact ggtttcaaaa atattgatga
     5161 cttaaataaa gtattaaaag atactgcgac atcttggaaa caaagaaaat aagtttaaaa
     5221 ggggattaat gctatgaata gagaagaagt ccaattatta ggttttgaaa ttgttgcatt
     5281 tgcaggggat gcacgttcta agtttttaga agcattaaca gcagctcaag ctggagattt
     5341 tgcaaaagca gatgcactga ttgaagaagg aaacaattgc attgcggaag cgcatagagc
     5401 acaaacaagc ctgttggcta aagaagcgca aggtgatgat attgcataca gtgtaacgat
     5461 gatgcatggt caagatcatt taatgacaac aattttactg aaagatttaa tgaagcattt
     5521 attagaattt tataaaagag ggtgatgaca atgatgcaaa aattgatcgc acaaattgaa
     5581 aaagggaagc catttttcga gaaattatca cgtaacatat atttaagagc catccgtgat
     5641 ggatttattt ctgcaatgcc tgtcatctta ttctcaagta tctttctatt aattgcatat
     5701 gtgccaaata tatttggttt taaatgggat aaaggcatgg aagccatttt aatgaaacca
     5761 tacaactata cgatggggct tgtagcattt ttagtagcag gaacgacagc gaaatcttta
     5821 acagattcat ttaaccgtaa gctagaaagt acaaatcaaa ttaactttat ttctacaatg
     5881 ctagcagcga tgtgtggatt cttgttctta gcttctgatc cagccaaaga tggtggattc
     5941 ttaagtgcat ttatgggaac taaaggttta ttaacagcat tcttatcagc atttgtaact
     6001 gttattgttt ataacttctg tgtgaagcgc aatattacaa ttaaaatgcc gaaagaagta
     6061 ccgccgaata tttcacaagt atttaaggac ttaattccat tttcagcggt aatcatcatt
     6121 ctttatgcat tagatttagt cattcgcaac agctttaaat caaatgtagc ggaaggtatt
     6181 ttaaaattat tcgaaccatt atttacagca gcagatggat ggattggtgt cacaattatc
     6241 tttggtgcct ttgcattatt ctggtttgta ggtattcatg gtccgtcaat tgtagagcca
     6301 gcaattgcag ccattacata tgcgaatatc gaagcgaact tcaagttgct tcaagctgga
     6361 gaacacgcag ataaaattat tacatcaggt acacaaatgt ttatcgttac atttggaggt
     6421 acgggtgcaa cattggtcgt cccgttcatg tttatgtgga tgacgaaatc taaacgaaac
     6481 aaagcgattg gacgtgcatc agttgtacca acattctttg gtgtaaacga accaatttta
     6541 tttggtgcac cactagtatt gaatcctgtg ttctttattc catttgtatt agcaccaatt
     6601 gttaacgtat ggattttcaa acttttcgtt gaagtgttag gaatgaatag ttttagtgtg
     6661 aatttacctt ggacaacacc aggtccattg ggcattatca tgggtacagg ttttggttta
     6721 tggtcattcg tactagctat tactttgatt gttgtagata ttattattta ctacccattc
     6781 ctaaaagttt atgatagtga aattcttgat gaagaagaag gacgtaaaga aagtaattca
     6841 gatttaaaag aaaaagttgc agcaaacttt gatacgaaaa aagctgattc aattttagcg
     6901 gcaagtggtg tatcagacga tgcagctaaa gcttcaaata tcacagaaca aacaaatgtc
     6961 ttagtacttt gtgccggtgg tggtacaagt ggattattag ccaatgcact taataaagca
     7021 gctgaagaat atcatgtgcc agtgaaagcg gcagctggcg gatatggcgc acatatggac
     7081 attatgaaag agtaccaatt aatcatttta gcgccacaag ttgcgtctaa ctatgaagat
     7141 attaagcaag atacagatag attaggtatt aaattagcga agactcaagg tgctgaatat
     7201 atcaaattga cacgagatgg ccaagcagcc cttgatttcg ttcaacaaca atttgaaaat
     7261 taagaatagg agtttttcat atgactaaaa cattacctga agattttatt tttggtggag
     7321 caacagcagc atatcaagca gaaggtgcga caaatacgga tggtaaaggt cgcgtagcat
     7381 gggatacgta tttagaagaa aactattggt acactgcaga accagcgagt gatttttata
     7441 acagatatcc agtggattta gaattaagtg aaaaattcgg tgttaatggt atccgaattt
     7501 caattgcatg gtctcgtatc ttcccaaatg gatatggcga agttaaccct aaaggtgttg
     7561 agtattacca taagttattt gcagagtgtc ataaacgtca tgttgaacca tttgtaacat
     7621 tgcatcattt tgatacacca gaagtgttac acaaagatgg cgattttcta aatcgtaaaa
     7681 cgattgacta ctttgtagat tatgctgaat attgttttaa agaattccca gaagtaaaat
     7741 attggactac attcaatgaa attggaccta ttggtgatgg tcaatattta gtaggtaaat
     7801 tccctccagg tattaaatat gattttgaaa aagtattcca atcacatcat aacatgatgg
     7861 tggctcatgc tagagcagta aaattattta aagatggcgg atacaaagga gaaattggtg
     7921 ttgtacacgc attgccaaca aaatatccgt tcgatccatc aaatcctgaa gatgttcgtg
     7981 cagcagaatt agaagatatc atccataata aattcatctt agatgcaaca tatttaggta
     8041 agtattctcg tgaaacgatg gaaggtgtgc aacatatctt atctgttaat ggcggtaaat
     8101 taaacattac agatgaagat tatgccattt tagatgcagc caaagattta aacgacttct
     8161 taggtatcaa ttactacatg agtgattgga tgagaggtta cgatggagaa tctgaaatca
     8221 cgcataatgc gacaggtgat aaaggcggtt ctaaatacca acttaaaggt gtcggacaac
     8281 gtgaatttga tgtcgacgta cctcgcacag actgggactg gatgatctat cctcaaggtt
     8341 tatatgatca aatcatgcgt gttgttaaag attatcctaa ctatcataag atttatatca
     8401 ctgaaaatgg tttaggatat aaagatgaat ttattgaatc tgaaaaaaca gttcatgatg
     8461 atgcacgtat tgattatgta agacaacatt tgaacgttat tgcagatgct attatagatg
     8521 gtgcaaatgt taaaggttac tttatttggt cattaatgga tgtgttctct tggtcaaatg
     8581 gttatgaaaa acgatatggt ttattctatg tcgattttga gactcaagaa cgttatccta
     8641 agaaaagtgc ttattggtac aaagagttag ccgaaacaaa agaaattaaa taattataga
     8701 tattaaaagg cctatcagtc gagtgctggt aggtctttat ttatagaaag agataaatta
     8761 aacatgcata tacatattta tatattaatc aatgggtgac acaccattga aagctaaaga
     8821 agcaatcaat taacaaacgt taacggacaa ctttccaaag tcatcttaaa agttaatgat
     8881 gtattcaaaa tcaactaaag gacattttta atcacatcct ttatacttat ataaaagaca
     8941 tgaatgggag ttaaaagtgt gaagaaaatt tttgtaatta ttacgacatt gttagcggtc
     9001 gctattatta taggctctat tattatggtg gtgtttagtc aacgacaggc acaaacattt
     9061 aaaatacaac aacagcaatt tgttaaaaag ccaattccaa cattgttctt acatggattt
     9121 ggtggtagtg ccaattctga aaagtttatg gtgaagcaag cagaaaaaag aggggtaact
     9181 aaagatatca tcactgctta cgtttcaaag gatggtgcag tgacatttaa agggaaacta
     9241 agaaaagatg cagtgaatcc tattgtgaaa attgaacttg aaaataacag acaaggctat
     9301 ttggataaga atgctgcgtg gtttaaaaat gtactgacta agttacaatc tgaatacaat
     9361 ttcgataaat tcaactttgt cggtcactca atggggaact taacatttgc acaatatatg
     9421 atgacatatg gtaacgacaa gtcactgcca cagttaaaca aacaagtgaa tattgcaggg
     9481 acatttaatg gtgttttaaa tatgaatgaa gatgtcaatg aaattacagt tgataaagat
     9541 ggtaaaccaa gtcgaatgaa tcaaccttat cagcaattac gcgtgctaaa agatatttat
     9601 aaaggtaaag gtatcgaagt gctaaatatt tatggggatt tgaaagatgg tacacattca
     9661 gacggcagag tgtctaatag ttcttcgaaa tcattaaaat atttactggg aaatagtccg
     9721 aaaagttatc gagaatctaa atatgaaggt gagcctgcac aacatagtca gcttcatgag
     9781 aatgaaaatg ttgctaatga gttaatcgac ttcttatgga aaaaataaag caactgctag
     9841 tttttctggg gcaaaaaagc ttgtaatatt agagcttttc aaaaattatc tattgtttga
     9901 gagtttccat aaaatgtcta agtcgtaaca ttttaaattt atgattatag caaatataat
     9961 gtggttgaag ttacatgaat gaatcagtgc ttaagtcaaa atataacaac taagaatgta
    10021 tttgcataca gacatcacga agacacaatt caaacttaac gcttaagtaa caaataagta
    10081 aaagtttcaa ataaagaaag gtgattaatg atgcaaaata aacaaattct ttttaacaaa
    10141 ataccagaag gcatgcctca agaggataca ttcaaaattg aagagattga cacgcctaaa
    10201 cttgagagcg atggtgtact tgtacaaacg ctgtatattt cagtggatcc atatatgaga
    10261 ggacgtatga ctaaggcaga ttcgtatgta cagccttttg aaattggtaa accgattgtt
    10321 agccatgtcg ttgcaaaagt aattgattcg acactcgcag attataaaaa aggagatgtc
    10381 gttgtaggta tgttgccttg gcgaatcatt aatcatgtcc aagcggatca aattactaaa
    10441 gttccaacga cagatgtacc acttgattta tatttaagtg ttttaggaat gccaggacaa
    10501 acagcatatc atggtctgct tgatattgga caacctaaag ccggtgatac tgttgtggtt
    10561 tcagctgcat ctggtgctgt aggttcagtt gtaggtcaaa ttgctaagat taaaggttgc
    10621 cgtgtagtag gtattgcggg tggcgacaaa aaagtaaatt atttaacaga gacactgggc
    10681 tttgacgctg gtattgatta taagaaagag gattttgcag aagcgttagc acaagcagta
    10741 ccagatggta ttgatgttta ttttgaaaat gttggtggaa cagttggcga tgaagtattt
    10801 aagcatttaa atcgttttgc acgtgtacca gtatgtggcg caatttcgtc atataatcat
    10861 cctgaagccg atatcggacc acgtattcaa ggtacgctta ttaagaagca agtaatgatg
    10921 agaggcttct tggtaagtga attcgctaat gcttttaaag aagctagtga acagcttgca
    10981 acatgggttc aagaaggtaa aattcagtca caagtaacca ttgaagatgg ttttgaaaat
    11041 gcgccacatg catttaaaaa tttatttact ggcgataact ttggtaaaca agttattaaa
    11101 gtaacggaat aataaagtat acgttttaac aaactaactt tgttaattga ccaaaattta
    11161 ataatttttt atctaaagta aatttgttca gcaacatggt agaaataagt ctaaaattta
    11221 atacgaaagt cgtctgtaat tatttatata ttcaaatgaa aaaggagtca tgatgctgcg
    11281 atataagcac acatggcttc tattttgtat aataagaaat aagttcataa atgaggtgaa
    11341 acgatatgaa aatgatagga tttgagaagc cctttaaatt ggaagaagga aatttattta
    11401 aagtatacga acaaagaaag ccaacgccag aaaacgatga tatcttagtc aaagtaaata
    11461 gcattagtgt aaatcctgta gatacaaagc aacgacaaat ggaagtcact caagcacctc
    11521 gtgtacttgg gtttgatgct attggtactg ttgaagctat cggaccagac gttacattat
    11581 ttagtccggg tgacgttgta ttttatgctg gatcgccaaa tagacaagga tcaaatgcga
    11641 catatcaatt ggtgtcagaa gctatagttg caaaagcacc acacaacata agtgctaatg
    11701 aagcggttag tctaccgcta actggtatta cggcatatga aacgtttttt gatacattta
    11761 aaatttctac gaatcctgct gaaaacgaag ggaagtctgt cttaatcatt aatggtgccg
    11821 gtggtgtagg cagtatagcc actcaaattg ctaaacggta tggtttaact gtcattacaa
    11881 cagcatcacg acaagaaaca acagagtggt gtgaaaagat gggcgcagat atcgtattga
    11941 atcataaaga ggatttagtg cgtcaattta aagaaattcc attagtagat tatatatttt
    12001 gcacctataa tacagacttg tattacaata ctatgattga actgataaaa ccattagggc
    12061 atattacgac tatcgtagct tttaatgaag atcaagattt aaatgcatta aaattaaaaa
    12121 gtataacatt tacacatgaa tttatgtttg cgcgtccaat tcatcgaacg cctgatatga
    12181 ttaaacaaca tgagtattta gaagatatta cgaaaaatat agaatcaggg cattaccaac
    12241 caacaacgac acaagttttt gaaggtttat cacctgaaaa cttatatcaa gcacatcaat
    12301 tgttggaaaa acaatcaatg attggaaaat tagtaattaa tatatagatt agtaagtaaa
    12361 gtcgccttat gcagaaaata ctgtataggc gacttatttt ttgtgtctag cgactattga
    12421 ttctaaacgg aaatatggca actttgcagg tatcaaatca ataatgcact agaaaggcat
    12481 tacttaaata caataaaata ctttgttgct caatgataaa taatttgagt gtgttttata
    12541 tatcattttt aaaagatgag gcattattaa ttgtgtctat ataaaattac aaatgattaa
    12601 aatgttgcag ttatgggtat gaacttacca ttacacagaa agggtttgta tttatgaaaa
    12661 ataaatcagt aagtctagtg ttttgggtat ctttagtgat atgtacgata tttgttgctt
    12721 ttggagcaat atttccgaaa cagttagaaa aactcacgca aaacattact acatttattg
    12781 cgctacattt ttcttggtat tatttattgc tcgttttagt tattttattt gtctgtgtgt
    12841 atattttatt ttcgagatac gcaaacatta cattaggtga agaaggcgaa gatcctgaat
    12901 tctcattgcc gtcttggttt gctatgttat ttagtgctgg tatgggaata ggacttgtgt
    12961 tctggacaac ggcagaacca atcagtcatg ccttcaaatt aacgcctatt cataaagctg
    13021 gcacgcaatc tgcaattaat gatgcaatgc agttttcatt tttccattgg gggattcatg
    13081 catgggcagt ctatggtatt gtcgcgctag tgtttgcata ttttagcttt cataaaggat
    13141 atcctggctt agtcagcgct acattgacgc ctttattagg tgaaaaggca atgcgtggac
    13201 ctttaggtgg tgccattgat gtattggcag tcatagctac agtaacaggc gttgctgcaa
    13261 cattaggttt cggtgcattg caaataaacg aaggtttaca ttttttattt aatgtaccga
    13321 gtaacttcac gatgcaagta atcttgattg tcattgcaac catattattt acttggtcag
    13381 catggtcagg tatcgataaa ggtatcaaaa cgttgagtaa tatcaacatg ttacttgctt
    13441 ttgtagtact tattggtctt tttattgttg ggccaacgct atacatttta aatacattta
    13501 cgaatggtct aggtaattat attgcaaatt tctttagtat gagtttacgc attccgacag
    13561 gtggtcaaaa attccaatgg ttacaaaatt ggacaatctt ttactgggca tggtggatat
    13621 cttgggcacc atttgtaggt atatttattg cacgtgtgtc aaaaggacgt acgattaaag
    13681 aatttattct aggtgtactt tttgtcccgg cgttagtttg ctttatattc tttgcggtat
    13741 tcggcgcgtc agcaatttac ttacaagata atcatattgc cgatattgct aaagctgcga
    13801 cagaaacagc aacttttgcg acgctacaac attatccgct aggttttgta ttaagcttaa
    13861 ttactttact tgttattatg attttctttg ttacatcagc ggattcggca acttatgttt
    13921 taggtatgtt gagttcaagt ggtgatatta atccgaagtc atttgtcaaa gtgagttggg
    13981 gtatcattat ggcattattt gcaatcatca tgatttacac aggtggtact caagcaattc
    14041 aaaatttatt aatcattgct gcgttaccat tttccgtggt cattatagcg atgatatggt
    14101 cgcttataaa atctttgagt gaggagaaac cgagaaatag taataaggtt ttaattaaac
    14161 atcgtgaccc agatatttta gaatatcgtt cttcaaaaca tattgacgaa aattaattaa
    14221 taatgaggtt ttatttacaa aaactaggga atatattact aaatggtact tcatcttata
    14281 tattaaaaat aaatttaaag ttattaattt attatgttta agaaaaaaac tgatgggtac
    14341 atatttaata tgtttttaaa ttaactttaa ctaaggaggt gtcgttaggg gtgaaacgac
    14401 ttaaaaactt tatccttggc ttattaatag tagtaatcgt ggggttcctg ttattcatgt
    14461 atatccaaga tggacgtata actgaatatc aagactactt ccttcaattt gaatggttcc
    14521 aaccattact tatttcactt gctgcactat tgatattaat aggtcttata ttagtattta
    14581 gtatcttcaa acctacgcat cgaaaacctg gattatacaa agacttcgat gatggtcatg
    14641 tttacgtatc tcgtaaagct gttgaaaaga cggcattcga tacggttgca aaatatgatc
    14701 aagtaagaca accaaatgta gttgcgaaac tatataacaa aaaaaataaa tcttatatcg
    14761 acattaaaac tgactttttc gtaccaaata atgttcaagt tcaatcttta actgaagcaa
    14821 ttcgttcgga tattaaaaag aatgtagaat atttcacaga aatgccagta cgtaagttag
    14881 aagttaatgt gagagatcag aaaacttctg gtccacgagt gttgtaaggg aggtatatca
    14941 tggctaacaa tcataaccaa aacggacaag actctacaca acaagtgatt aattttttaa
    15001 aagtatttaa atggagaatc gttggtttcc tagcgtttct attaatcgcg atattattct
    15061 taacgttagg tttttggaaa acagtactta tcatcgtttt atgtttaatt ggtgtaggta
    15121 ttgggtatat gaaagaccgt aagcaagatt ttatgaattt tttaaatcga tggagttaat
    15181 tcatcaattt agaatttaat taaaaaaata taaaaattaa caagtaaaag gagaatctat
    15241 tatgactgta gataacaata aagcaaaaca agcatacgac aatcaaactg gtgttaacga
    15301 aaaagaaaga gaagagcgtc aaaaacaaca agaacaaaat caggagcctc aattcaaaaa
    15361 caaattaaca ttctctgatg aagttgttga aaaaattgct ggtatcgctg cacgtgaagt
    15421 taaaggtatc ttagatatga aaggtggctt aactgataca ttcactaatg cattctcaag
    15481 tggcaacaat gttactcaag gtgtatctgt tgaagttggt gaaaaacaag ctgctgtaga
    15541 cttaaaagta atcttagaat atggtgaatc agcaccaaaa atcttccgta aagtaactga
    15601 attagttaaa gaacaagtta aatatattac tggtttagat gtagttgaag ttaacatgca
    15661 agttgacgat gtaatgactc aaaaagagtg gaaacaaaaa cacgaaaaaa ataacgaaaa
    15721 caataaccaa gaaagacaag gtttacaata agttattcga taaaaagggc ttgggacatt
    15781 aa
//
LOCUS       DAMQWL010000056        15778 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.056, whole genome shotgun sequence.
ACCESSION   DAMQWL010000056 DAMQWL010000000
VERSION     DAMQWL010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 15778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15778
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.056"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(167..1069)
                     /gene="cvfB"
                     /locus_tag="PF788_001574"
     CDS             complement(167..1069)
                     /gene="cvfB"
                     /locus_tag="PF788_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding virulence regulatory protein CvfB"
                     /protein_id="HDG6303837.1"
                     /translation="MALDKDIVGSIEFLEVVGLQGSTYLLKGPNGENVKLNQSEMNDD
                     DELEVGEEYSFFIYPNRSGELFATQNMPDITKDKYDFAKVLKTDRDGARIDVGLPREV
                     LVPWEDLPKVKSLWPQPGDYLLVTLRIDRENHMYGRLASESVVENMFTPVHDDNLKNE
                     VIEAKPYRVLRIGSFLLSESGYKIFVHESERKAEPRLGESVQVRIIGHNDKGELNGSF
                     LPLAHERLDDDGQVIFDLLVEYDGELPFWDKSSPEAIKEVFNMSKGSFKRAIGHLYKQ
                     KIINIETGKIALTKKGWSRMDSKE"
     gene            1216..2817
                     /locus_tag="PF788_001575"
     CDS             1216..2817
                     /locus_tag="PF788_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDG6303838.1"
                     /translation="MLQVTDVSLRFGDRKLFEDVNIKFTEGNCYGLIGANGAGKSTFL
                     KILSGELDSQTGHVSLGKNERLAVLKQDHYAYEDERVLDVVIKGHERLYEVMKEKDEI
                     YMKPDFSDEDGIRAAELEGEFAEMNGWNAEADAANLLSGLGIDPTLHDKKMAELENNQ
                     KIKVLLAQSLFGEPDVLLLDEPTNGLDIPAISWLEDFLINFDNTVIVVSHDRHFLNNV
                     CTHIADLDFGKIKVYVGNYDFWYQSSQLAQKMAQEQNKKKEEKMKELQDFIARFSANA
                     SKSKQATSRKKQLEKIELDDIQPSSRRYPFVKFTPEREIGNDLLIVQNLSKTIDGEKV
                     LDNISFTMNPNDKAILIGDSEIAKTTLLKILAGEMEPDEGSYKWGVTTSLSYFPKDNS
                     EFFEGVNMNLVDWLRQYAPEDEQTETFLRGFLGRMLFSGEEVKKKASVLSGGEKVRCM
                     LSKMMLSSANVLLLDEPTNHLDLESITAVNDGLKSFKGSIIFTSYDFEFINTIANRVI
                     DLNKQGGVSKEIPYEEYLQEIGVLK"
     gene            3677..4882
                     /locus_tag="PF788_001576"
     CDS             3677..4882
                     /locus_tag="PF788_001576"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HDG6303839.1"
                     /translation="MVTRSVLKFGGSSVSDFTKIKRIAEMLKERVNQDEQLIVVVSAM
                     GNTTDQLMTNVSTLTKAPKQQELALLLTTGEQQTVSYLSMVLNDIGMNAKAMTGYQAG
                     IKTIGHHLKSKIAQINPQTFEQAFQENDILVVAGFQGINEHQELTTLGRGGSDTTAVA
                     LAVSNQIPCEIYTDVDGVYATDPRLLPKAKRLDIVSYEEMMEMSALGAGVLETRSVEL
                     AKNYNIPLYLGKTLSNVKGTWIISNEEILEKKAVTGVALDKHMMHVTISYPLPDNQLL
                     TQLFTELEEGAVNVDMISQIVNLDGLQLSFTIKDSDFHQISMILETLKNQYEALAYKI
                     NEHYVKISLIGSGMRDMSGVASKAFLTLIENNIPFYQTTTSEISISYVIDDFNGQQAV
                     EKLYDAFNI"
     gene            4946..5935
                     /locus_tag="PF788_001577"
     CDS             4946..5935
                     /locus_tag="PF788_001577"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDG6303840.1"
                     /translation="MTKLAVVGATGLVGTKMLETLNRKNIPFDELVLFSSARSAGQEV
                     EFQGKTYTVQELTDARASEHFDYVLMSAGGGTSEHFAPLFEKAGAIVIDNSSQWRMAE
                     DIDLIVPEVNEPTFTRGIIANPNCSTIQSVVPLKVLQDAYGLKRVAYTTYQAVSGSGM
                     KGKKDLAEGVNGKAPEAYPHPIYNNVLPHIDVFLENGYTKEEQKMIDETRKILNAPDL
                     KVTATCARVPVQDSHSVEIDVTLDKETTAEDIKALFDQDDRVVLVDNPENNEYPMAIN
                     STNKDEVFVGRIRRDDSLENTFHVWCTSDNLLKGAALNAVQVLEQVMRLKGAN"
     gene            5937..6824
                     /locus_tag="PF788_001578"
     CDS             5937..6824
                     /locus_tag="PF788_001578"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDG6303841.1"
                     /translation="MTHLFEGVGVALTTPFTNNKVNIEALKTHVNFLLENNAQAIIVN
                     GTTAESPTLTTDEKERILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAI
                     MLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIV
                     ALKDATNDFEYLEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQ
                     ALYDAQQSGLDIQDQFKPIGTLLSALSVDINPIPIKALTSYLGFGNYELRLPLVSLED
                     TDTKVLRETYDTFKAGENE"
     gene            6821..7543
                     /locus_tag="PF788_001579"
     CDS             6821..7543
                     /locus_tag="PF788_001579"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000698231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDG6303842.1"
                     /translation="MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQ
                     HIADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFF
                     SANMSYGVHALTKILAAAVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKEN
                     VTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFAN
                     GAIQAAERLVNKPNGFYTFDNL"
     gene            7570..8289
                     /gene="dapD"
                     /locus_tag="PF788_001580"
     CDS             7570..8289
                     /gene="dapD"
                     /locus_tag="PF788_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HDG6303843.1"
                     /translation="MVQHLTAEEIIQYISDAKKSTPIKVYLNGNFEGITYPESFKVFG
                     SEQSKVIFCEADDWKPFYEAYGSQFEDIEIEMDRRNSAIPLKDLTNTNARIEPGAFIR
                     EQAIIEDGAVVMMGATINIGAVVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIE
                     PPSASPVIIEDDVLIGANAVILEGVRVGKGAIVAAGAIVTQDVPAGAVVAGTPAKVIK
                     QASEVQDTKKEIVAALRKLND"
     gene            8432..9583
                     /locus_tag="PF788_001581"
     CDS             8432..9583
                     /locus_tag="PF788_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDG6303844.1"
                     /translation="MNELEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDC
                     PLETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALM
                     LFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPF
                     ADEGIAVIRDEEITASATEYRFFLTGLSSHVADKEQGHSCGEALQHVLTQISQIQQFH
                     LNGLKRNIVHIGHFKAGEAINTVPSNGYLEGTIRTYDIDDLTIVKNQMHKIAESVKLL
                     FNVDCEVKFAEGYPPTINSPKLRTQIEDALIKADLNVYDKPTPFLFGEDFSFYGQQLA
                     PAYFVFIGTRNEDKGFVTGLHTSHLNFDEKVLINVVNFYENLLNNYKEV"
     gene            9588..10673
                     /locus_tag="PF788_001582"
     CDS             9588..10673
                     /locus_tag="PF788_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDG6303845.1"
                     /translation="MTATWSVNKKIFLQNAITVKNNQPLMAVVKNNAYHYDLEFAVTQ
                     FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAVYEFDLVREHQIHMTLPSLTYYYN
                     HKNDLAGIHVHLEFENLLHRSGFKDLNEIKEVLKDHHHNQNAKMIISGLWTHFGYADE
                     FDVSDYNVERSQWMEIVEALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIAL
                     YGSRPYSSLNQHDIVQSLTLKAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGY
                     GDGILRTRAKHEALINGKRYPIRALMMSHMFVEVDGNVHAQDEVILYNNDIRIDEYTF
                     KGVGANSEQLSAMNHDSLKKEYISNDC"
     gene            10663..11928
                     /gene="lysA"
                     /locus_tag="PF788_001583"
     CDS             10663..11928
                     /gene="lysA"
                     /locus_tag="PF788_001583"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDG6303846.1"
                     /translation="MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRY
                     HRAFKDSGLKYNISYASKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIH
                     FHGNNKTKHEIRYALENNIGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEF
                     IQTGQEDSKFGLSIQYGLAKKAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIV
                     LRWLKEQGIQVELLNLGGGFGIKYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEI
                     GIEPGRSIVGEAGVTLYEVGTIKEIPEINKYVSIDGGMSDHIRTALYDAKYQALLVNR
                     NEEADDSVTIAGKLCESGDIIIKDAKLPSSVKRGDYLAILSTGAYHYSMASNYNQMQK
                     PSVFFLKDGKAREVIKRQSLRQLIINDTK"
     gene            complement(12168..12569)
                     /gene="msa"
                     /locus_tag="PF788_001584"
     CDS             complement(12168..12569)
                     /gene="msa"
                     /locus_tag="PF788_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sarA expression modulator protein Msa"
                     /protein_id="HDG6303847.1"
                     /translation="MKYLILSLVANLLVFGVLSAIGLNINILAAMMIVLVIPIMISGI
                     LFFKTNIDKTYIFFNIIFIDFYYYIYNVHLMTLPKFNNYIKAEMMELEDIDVLITSKD
                     FGFDEILFYTLYLLLILIVLYYLKKQVKHKI"
     gene            complement(12766..12966)
                     /gene="cspA"
                     /locus_tag="PF788_001585"
     CDS             complement(12766..12966)
                     /gene="cspA"
                     /locus_tag="PF788_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock protein CspA"
                     /protein_id="HDG6303848.1"
                     /translation="MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEG
                     QAVEFEVVEGDRGPQAANVVKL"
     gene            complement(13137..13445)
                     /locus_tag="PF788_001586"
     CDS             complement(13137..13445)
                     /locus_tag="PF788_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HDG6303849.1"
                     /translation="MWTVTKIRADYEGWWLFSDWPENIVEKYQYQDFDDMFKHYQQLI
                     NQCKVQFDNYVTGKYNIYAFYNNCDMNYCEDCEEDLQIFYSFIVLQNNEVYYKLPIID
                     "
     gene            13608..13877
                     /locus_tag="PF788_001587"
     CDS             13608..13877
                     /locus_tag="PF788_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDG6303850.1"
                     /translation="MRHIHLQVFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDDYVEIY
                     AQGDDADIERFIQGVIEGASPASNVTSHQLEELELNQKLSDFRSI"
     gene            13896..14525
                     /locus_tag="PF788_001588"
     CDS             13896..14525
                     /locus_tag="PF788_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-bromo-4-chloroindolyl phosphate hydrolysis
                     family protein"
                     /protein_id="HDG6303851.1"
                     /translation="MTVRYNISHIFGVLVGIPVAFLTSIFGMIALDVSFLIDMSIGIV
                     GFLMTYLPIQKLTSRKYLNEIGLTRKDYRYIRNQLNHTHQKLRGILKTYVNIRSIKDF
                     RQINDIYQISRSIYTTVRQRPASFYKVEGFFYSHIDNALNLVDAYTRLAKMPKKSINE
                     QQKLEQTRITLDEVKRTLIADLKRLNEDDYERLDIEMELNKLHQKHHQD"
     gene            14557..15693
                     /locus_tag="PF788_001589"
     CDS             14557..15693
                     /locus_tag="PF788_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HDG6303852.1"
                     /translation="MTENKSFKESHPLDDFISDKELSNTTIQKEKLTIEQQKQVDTIS
                     KQINPLDNEGLLAFGSDLQKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSVNPN
                     ELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSAQVDRITIQLQKHQTHLTRDIELLDT
                     LYDKNKQYFDDLSLHIIAAQQKKLQLENEKLPQLQQQAQQSTNQMDIQQVADMQQFID
                     RLDKRIYDLQLSRQIALQTAPQIRMIQNVNQALAEKIQSSILTSIPLWKNQMAIALTL
                     MRQRNAVAAQRAVTDTTNDLLTANAEMLKQNAIETATENERGIVDLDTLKRTQRNIIE
                     TIEETLINQQHGREERQLAEKELQQLEQDLKSHLVNIKGPNKQS"
BASE COUNT         5628 a         2481 c         2754 g         4915 t
ORIGIN      
        1 taatagaaat cagctttttt acattgccta agaacttaat gtcccagcct attcgtttga
       61 attatttaat tttttacttt gaaaggaatg tttaaaaaac tacttcatct gtccgattta
      121 atattgaata aaaaaaacac gcatcctacg acacgtgtaa aaatgattat tcttttgagt
      181 ccattcgact ccaacctttt ttagttaaag cgattttacc tgtttctata ttaataatct
      241 tctgtttata taagtgaccg attgcacgtt tgaatgaacc tttactcata ttgaatactt
      301 ctttaatcgc ttcagggctt gatttgtccc agaatggtaa ttcaccatca tattcaacta
      361 gtaaatcaaa gatgacttgg ccgtcatcgt ctaaacgttc atgtgcaagt ggtaaaaatg
      421 aaccatttaa ctcaccttta tcattatgcc cgataattct aacttgaaca gattcaccta
      481 atcttggttc agctttacgt tctgattcat gtacgaaaat tttgtaacct gattcgctta
      541 ataaaaagct accaattcgt aatacgcggt aaggtttggc ttcaatgact tcgtttttta
      601 aattatcgtc gtgtacaggt gtaaacatat tttctacaac agattcactc gctaaacgtc
      661 catacatatg attctcacgg tcaattcgta atgtaactag caaataatca ccaggttgtg
      721 gccatagtga tttcactttt ggtaaatctt cccatggtac taacacttca cggggtaatc
      781 caacatctat acgtgcccca tcgcgatccg ttttaagtac tttagcaaag tcatatttat
      841 ctttcgtaat atcaggcata ttttgagttg caaataattc acctgaacgg tttggataaa
      901 tgaagaaact atattcttca cctacttcta attcatcatc atcgttcatt tctgattggt
      961 ttaactttac gttttcaccg tttggtcctt ttaaaaggta agttgaacct tgtaacccta
     1021 ctacttcaag gaattctata gaacctacta tatctttgtc taatgccatg ttattctcct
     1081 tcgattcttg tattctttat tattataaca tgtgtgagtc attctatcat tacaacttat
     1141 atgaggtcga aactgtgacg ataatatgat ataattcttc cgttagaata tcgaatgaaa
     1201 aaaaggagaa aatgcatgtt acaagtaact gatgtgagtt tacgttttgg agatcgtaaa
     1261 ctatttgaag atgtaaatat taaatttaca gaaggtaatt gttatggatt aattggtgcg
     1321 aatggtgcag gtaaatcaac attcttaaaa atattatctg gtgaattaga ttctcaaaca
     1381 ggacatgttt cattagggaa aaatgaacgt ctagctgttt taaaacagga ccactatgct
     1441 tatgaagatg aacgcgtgct tgatgttgta attaaaggtc acgaacgtct ttatgaggtt
     1501 atgaaagaaa aagatgaaat ctatatgaag ccagatttca gtgatgaaga tggtatccgt
     1561 gctgctgaac ttgaaggtga atttgcagaa atgaatggtt ggaatgctga agctgatgct
     1621 gctaaccttt tatctggttt aggtatcgat ccaactttac acgataaaaa aatggctgaa
     1681 ttagaaaaca accaaaaaat taaagtatta ttagcgcaaa gtttattcgg tgaaccagac
     1741 gtactattac tggatgagcc tactaacggt ctcgatattc cagcaatcag ttggttagaa
     1801 gatttcttaa ttaactttga taatactgtt atcgtagtat cgcatgaccg tcatttctta
     1861 aataatgtat gtactcatat cgctgattta gacttcggta aaattaaagt ttatgttggt
     1921 aactatgatt tttggtatca atctagtcag ttagctcaaa agatggctca agaacaaaac
     1981 aagaaaaaag aagaaaaaat gaaagagtta caggacttta ttgctcgttt ctcagctaac
     2041 gcttctaaat ctaaacaagc aacaagtcgt aaaaaacaac tcgagaaaat tgaattagat
     2101 gatattcaac catcatcaag aagatatcct ttcgttaaat tcacacctga gcgcgaaatc
     2161 ggtaatgact tactaatcgt tcaaaatcta tctaaaacga ttgacggtga aaaagtatta
     2221 gataatattt cattcacaat gaatccaaat gataaagcaa ttttaattgg ggatagtgaa
     2281 attgcgaaaa ccacattgct taaaatatta gccggtgaaa tggaaccaga cgaaggttca
     2341 tataaatggg gtgtaacaac gtcattaagt tacttcccta aagataactc agaattcttt
     2401 gagggcgtta atatgaacct tgtagattgg ttaagacaat acgcaccaga agatgagcaa
     2461 actgaaacat ttttacgcgg cttcttaggc cgtatgctat ttagtggaga agaagttaag
     2521 aaaaaagcta gtgtactttc aggtggagaa aaagtacgtt gtatgctaag taaaatgatg
     2581 ttatcaagtg caaacgttct tttacttgat gaaccaacaa accacttaga cttagaaagt
     2641 attactgctg ttaatgatgg acttaaatca ttcaaaggtt ctattatctt tacttcatat
     2701 gactttgaat ttatcaatac aatcgcaaac cgtgttatcg atttaaataa acaaggtggc
     2761 gtttcaaaag aaattccata tgaagaatat ttacaagaaa tcggcgtttt aaaataaaca
     2821 taatatgtag aatttctttt cgaaaatctc tgtattgagg cccgaccaac ttgcacatta
     2881 ttgtaagttg gcttactgtc accttctata ttgggactta ttccgcaact tgtattgttt
     2941 gtagaaatta ggaatccaat ttctctatgt gttgcaccga caaggattga aaaaagctag
     3001 ctacaaagtc attttcattc agtcaactac tgtcaatata acattgcagg gcctagggca
     3061 ttgattcatg tccgagacta tattcaattt aatagacatt aactgggcgt ctcgatgcta
     3121 atatttatag catcgaggtg tcctttttat tttatttttt aacacatcag catagtgaac
     3181 accccttctc taaattacaa atacagttat caacgcatta aaagagtaca tttatttaat
     3241 gtgcatattg attatgctat aagtattttg aattttattt ttcaaaaagt ctcattatca
     3301 ccacctttta aaatataagc aacgctataa cttgaatttt caggttattc caaaaaatct
     3361 aaattatcgg tttacattca tatttgtcat atgtataatg aacacatacc aatttaataa
     3421 tattttgatg aggcgcatca atcatgagta aagtttagat tactgtctgc taacagctaa
     3481 atttgaaagg gtgcgatgcc gaagcaatta taatagcagt tataatttgt tggacttttt
     3541 ggttaagagc tgagagtttg tcattattta aaaataatgg agtgcatcac ttgtatatag
     3601 attaagagca agttcgcatt ccgaacttgt tcttttttta ttattgtgtg cccttcctaa
     3661 caattaggag gattatatgg taacaagaag tgtgttgaaa tttggcggat catccgtcag
     3721 tgattttaca aaaataaaaa ggatcgctga aatgttaaag gagcgagtca atcaagatga
     3781 acaattaatt gtcgttgtaa gtgctatggg taacacaaca gatcaattaa tgacgaatgt
     3841 atcaaccttg actaaagcac caaaacaaca agaactggca ttattattga caaccggaga
     3901 gcaacaaact gtatcttatt tatcaatggt attaaatgat atcggtatga atgccaaagc
     3961 aatgactggc tatcaagcgg gtattaaaac cattggccat catttaaaaa gtaaaattgc
     4021 tcaaattaat cctcaaacat ttgaacaagc ctttcaagaa aacgatattt tagtagttgc
     4081 tggatttcaa ggcatcaatg aacatcagga attaacaact ttaggcagag gtggttctga
     4141 tacgaccgct gtggcacttg ctgttagtaa tcaaatacct tgtgaaattt ataccgacgt
     4201 tgatggtgtg tatgccactg acccaagact tttaccaaag gctaaacgac tagacatcgt
     4261 ctcatatgaa gaaatgatgg aaatgagcgc tttaggtgct ggtgtacttg aaacaagaag
     4321 tgttgaatta gctaaaaact ataatatccc tttatattta ggaaaaactt tatcgaacgt
     4381 gaaaggaaca tggattatat caaatgaaga aatattagag aaaaaagcag ttactggtgt
     4441 ggctttggat aaacatatga tgcatgtaac aattagttat cccctacctg acaatcagct
     4501 acttacccaa ctatttacgg aacttgaaga aggtgctgta aatgttgata tgatttcaca
     4561 aatcgtcaac ttggatgggc tacaactatc cttcacgatt aaagatagtg attttcatca
     4621 aatttctatg attcttgaaa cattaaagaa tcaatatgaa gcattagctt ataaaatcaa
     4681 tgagcattat gtcaaaattt cattaattgg ctcaggcatg cgtgatatgt caggtgtggc
     4741 atcaaaagca tttttgacat taattgaaaa taatatacct ttctaccaaa caacaacatc
     4801 tgaaataagt atttcatacg tcattgatga ttttaatggg caacaagcgg tagaaaaact
     4861 atatgacgca tttaacattt aatggtaaaa tgattgttaa aatattctaa aaattggaaa
     4921 ttattataaa atggagtgac aagttatgac aaagttagca gttgtgggtg caacaggatt
     4981 agtaggtaca aaaatgttgg agacattaaa tcgtaaaaat attcctttcg atgaattagt
     5041 attattttca tcagcacgtt ctgcagggca agaagttgaa tttcaaggaa aaacatatac
     5101 agttcaagaa ttaactgatg ctcgtgcaag tgaacatttc gattatgtat taatgagtgc
     5161 tggtggcggt acaagcgaac actttgcccc actttttgaa aaagctggtg caatcgttat
     5221 agacaattca agtcaatggc gtatggcaga agatattgat ttaatcgttc cggaagtcaa
     5281 tgaacctaca tttacaagag gtatcattgc caatccaaac tgctctacga ttcaatctgt
     5341 tgtacctcta aaagtattgc aagatgctta tggtttaaaa cgagtggcat atacaacata
     5401 tcaagctgta tcaggttcag ggatgaaagg taagaaagat ttagctgaag gtgtaaatgg
     5461 taaagcacca gaagcatatc cacatccaat ttataataat gtgttaccgc atattgatgt
     5521 gtttttagaa aacggatata caaaagaaga acaaaaaatg attgatgaga cgagaaaaat
     5581 tttaaatgcg ccagacttaa aagtaacagc aacatgcgca cgtgtgcctg ttcaagatag
     5641 tcatagtgtt gaaattgatg taacgcttga caaagaaaca acagcagaag atattaaagc
     5701 gttatttgat caagatgacc gcgttgtttt agtagacaat ccagagaaca atgaatatcc
     5761 aatggcaatc aattctacta ataaagatga agtgtttgtt ggccgtatac gtagagatga
     5821 ttcattagaa aatactttcc atgtatggtg tacatcagac aatttattaa aaggtgctgc
     5881 attaaatgct gtacaagtat tggaacaagt tatgcgttta aaaggagcga attaaaatga
     5941 cacatttatt tgagggtgtt ggcgttgcac ttacaacccc ttttacaaat aacaaagtta
     6001 atattgaagc tttgaaaaca cacgttaatt ttttactaga aaataatgcc caagcaatca
     6061 tcgttaatgg aactactgct gagagcccta ctttaacaac agatgaaaaa gaacgcattc
     6121 taaaaacagt tattgatctt gtagataaac gtgttcctgt catagcagga actggcacta
     6181 atgatactga aaagtcaatc caagcttcaa tccaagctaa agccttaggg gctgatgcaa
     6241 ttatgttaat tacgccctac tacaacaaaa cgaaccaacg tggtttagtc aaacactttg
     6301 aagcgattgc agatgctgtg aaattaccag tagtgctgta caatgttcct tcaagaacga
     6361 acatgacaat tgaaccagaa actgtagaaa tattaagtca acatccttat atagttgctt
     6421 taaaagatgc tacgaatgat tttgagtatt tagaagaagt gaaaaagcgc attgatacaa
     6481 attcatttgc attatatagt ggcaatgatg acaacgtcgt cgaatactat caacgtggcg
     6541 gtcaaggggt tatctctgtt attgccaatg tcattcctaa agaatttcaa gcgttatacg
     6601 atgctcaaca aagtggatta gatattcaag atcaatttaa accaatcggc acactgttat
     6661 cagctttatc agttgatatt aacccaattc ctattaaagc tctaacaagt tatttaggat
     6721 ttggaaatta tgaattacgt ctaccattgg ttagcctaga agatacagat actaaagtgc
     6781 ttcgtgaaac atatgacaca tttaaagcgg gtgaaaatga gtgaaaatat tactaattgg
     6841 ctatggcgca atgaatcaac gcgttgctag attagcagaa gaaaaaggac atgaaatcgt
     6901 tggggtcatt gaaaatacac cgaaagcaac aacgccatat caacaatatc aacatattgc
     6961 agatgttaaa ggtgccgatg ttgcaataga tttttcaaat ccaaatctgc ttttcccttt
     7021 attagatgaa gattttcatt tgccattagt tgtggcaaca actggcgaga aagaaaaact
     7081 acttaataag ttagatgaat tgagtcaaaa tatgcctgtg tttttcagcg cgaacatgag
     7141 ttatggcgtt catgcattga ctaaaatttt agcagctgct gttcccctac ttgatgattt
     7201 cgacatcgaa ttgactgagg cacatcataa taaaaaagta gatgcaccaa gtggtacgtt
     7261 agaaaaattg tatgatgtga tcgtatcttt gaaagaaaat gtaacacctg tgtatgatag
     7321 acatgaatta aatgaaaaac gccagccaca agatattggt atacattcta ttcgtggagg
     7381 tacgattgtc ggtgaacatg aagttctatt tgctggcact gatgaaacga ttcaaatcac
     7441 gcatcgtgca caatcaaaag atatttttgc gaatggtgca atacaagcag cagaacgctt
     7501 agttaataaa ccaaacggct tttatacgtt tgacaactta taaacatatt aaaggagatc
     7561 gattatttta tggtacaaca tttaacagct gaagaaatta ttcaatatat aagtgatgct
     7621 aaaaagtcta caccaataaa agtatattta aatggtaatt ttgaaggcat cacatatcca
     7681 gaaagtttta aagtatttgg ttcagaacaa tctaaagtaa tcttttgtga agcggatgat
     7741 tggaaacctt tttacgaagc atatggtagt caattcgaag atatagaaat tgaaatggat
     7801 cgtcgcaatt ctgctattcc attaaaagac ttaacaaata cgaatgcacg aattgaacca
     7861 ggtgcgttta ttagagaaca agccattatt gaagatggtg ctgtcgttat gatgggcgca
     7921 acaattaata ttggcgcagt cgttggcgaa ggtacaatga ttgatatgaa tgctactctc
     7981 ggtggtcgtg ctacaactgg taaaaatgta catgtagggg ctggcgcagt attagcaggt
     8041 gtgattgaac cccctagtgc ttcaccggtt ataatcgagg atgatgtatt aatcggtgca
     8101 aatgcagtta ttttagaagg tgtacgtgtt ggtaaaggtg ctattgttgc agctggcgcg
     8161 attgtgacac aagatgtacc agctggtgca gttgttgctg gtacacctgc aaaagtgatt
     8221 aagcaagctt ctgaagtaca agatactaaa aaagagattg tagcagcatt aagaaaactg
     8281 aatgactagt gacgtcaacg tataataatt tcaaggttga gatacgatta tgtctcaacc
     8341 ttattgttta gcattgaata aacttatgat cacaaatttc gaaatacgtt acactattta
     8401 tatagtaatt taacacaaag gattgataat tatgaatgaa ttagaatttg ttacgaaaca
     8461 tcgccgtcat ttacatcaac atcctgaatt aagcttacat gaatttgaaa caactgctta
     8521 tattaaagcg tttttagata gtttaaatat taaatacgat tgcccattgg aaactggcgt
     8581 cattgcatac ttagaaggta atggctcaca tacgatagcg tatagagctg atattgatgc
     8641 gttacctatt ttagaggaaa atgatgtgcc ttatcgcagt caatctgatc atgtgatgca
     8701 tgcttgtgga catgatggtc atacaactgc attaatgctt tttgtacaac gttgcaaaga
     8761 catgcaagat gcaggtcaat taccgcaaaa tgtcgttttc attttccaac ctgcagaaga
     8821 aactggtggc ggtgcaaatc gattaataaa agccggtgcc tttgataagt atccaattga
     8881 agcggtattt ggtattcatg ttaacccatt tgctgatgaa ggcattgcag tgataagaga
     8941 tgaagaaatt acggccagcg caacagagta tcgctttttc ttaacaggcc tgtcaagtca
     9001 tgttgctgat aaagaacaag gtcattcttg tggtgaagca ttacaacatg tattaactca
     9061 aatatcacaa attcaacaat ttcaccttaa cggtttgaaa cgaaatattg ttcatattgg
     9121 tcattttaaa gctggtgaag cgattaacac tgtaccaagt aatggctatt tagaaggtac
     9181 tattcgtaca tatgatattg atgatttaac aatcgttaaa aatcaaatgc acaagatagc
     9241 agaaagtgtc aagcttctgt ttaatgtaga ttgtgaagtt aaatttgcag aaggttatcc
     9301 ccctacaatc aatagtccga aattacgtac tcaaatagag gacgccttaa taaaagctga
     9361 tttaaatgtc tatgacaaac caacgccatt cttatttggg gaagatttta gtttttatgg
     9421 tcaacaacta gctccagctt actttgtttt tataggaaca cgaaatgaag ataaaggttt
     9481 tgtaactggt ttgcacacat cacatttaaa ttttgatgaa aaagtgttaa taaacgtggt
     9541 taatttttac gaaaatttat taaataatta caaagaggtg taatacattg acagcaacat
     9601 ggtctgtaaa taagaaaata tttttacaaa atgcaatcac agtcaaaaac aatcagccat
     9661 taatggcagt tgttaaaaat aatgcatatc actatgacct agaatttgct gtaactcagt
     9721 ttatccatgc aggtatagat acatttagca caacatcact acgagaagca attcaaatta
     9781 gacaacttgc tccagatgca acaatctttt taatgaatgc agtttacgag tttgatttag
     9841 tccgtgaaca tcaaatacat atgactttgc cgtcgttgac atattactat aaccataaaa
     9901 atgatttagc tggtattcat gttcacttag aatttgaaaa tttattacat cggtctggat
     9961 ttaaagattt aaacgaaatt aaagaagtat tgaaagatca ccatcataat caaaatgcaa
    10021 aaatgattat tagtggttta tggacccatt ttggatatgc tgatgaattc gatgtgtcag
    10081 attataatgt tgaacgttca caatggatgg aaattgttga agcactttta tctgaaggtt
    10141 atcagttcga cctaatccat gctcaaaata gtgcgagttt ttatcgggaa ggacaaatat
    10201 tactacccca ccatacacat gcgcgtgtag gtattgcgtt atacggttca agaccatata
    10261 gttcactgaa tcaacatgat atagttcagt cattaacttt aaaagcacat gttattcaag
    10321 tgcgcgaagt acaagctggt gattattgcg gttatagctt tgcctttgaa gtgactaaaa
    10381 acaatacaaa attagctgta gttgatatcg gttatggcga tggaatttta agaactcgtg
    10441 ctaaacatga agcacttatc aatggtaaac gctacccgat acgtgcatta atgatgagcc
    10501 atatgtttgt tgaagtagat ggcaatgtac atgcacaaga tgaagttatt ctttataata
    10561 atgatatccg catcgatgaa tataccttta aaggtgttgg tgcaaattct gaacaattaa
    10621 gtgctatgaa tcatgattct ttaaaaaagg agtacatttc aaatgactgt taaatataat
    10681 caaaatggcg aattaacaat ggatggtatt agtttaaaaa cgattgcaca aagctttggt
    10741 acacctacca ttgtttatga tgaactacaa attagagaac agatgcgccg ttaccatcgc
    10801 gcatttaaag atagtggatt aaaatacaat atttcatacg cctcaaaggc atttacttgc
    10861 attcaaatgg tcaaacttgt agctgaggaa gatttacagt tagatgttgt ttctgaaggt
    10921 gaattatata cagctttaga agcaggtttt gaaccgagtc gcatccattt ccatggtaac
    10981 aataaaacga aacatgaaat taggtatgct ttagaaaata atatcggtta ttttgttata
    11041 gattcattag aagaaattga attaatagac cgctatgcta atgatacggt tcaagttgta
    11101 ttacgagtta atccaggtgt tgaagcacat acacacgaat ttattcaaac tgggcaagaa
    11161 gatagtaagt ttggattatc aattcaatat ggcttagcta aaaaagcaat tgacaaagtc
    11221 caacaatcta aacacttaaa attaaaaggt gtacattgtc atattggttc acagattgaa
    11281 ggtacagaag catttattga aactgctaaa attgttttac gttggcttaa agagcaaggc
    11341 attcaagttg aattattaaa ccttggtggt ggctttggta ttaaatatgt tgaaggtgac
    11401 gaaagtttcc ctatcgaaag tggtattaaa gatattacag acgcaataaa atccgaaatt
    11461 aaagttctag gtatagatgc accagaaata ggtattgaac cgggacgatc aattgtaggt
    11521 gaagctggcg ttactttata tgaagttgga accattaaag aaattccaga gattaataaa
    11581 tatgtttcaa tcgatggcgg tatgagtgat catatcagaa ctgcacttta tgacgcaaag
    11641 tatcaagcat tgcttgttaa tagaaatgaa gaagcagatg acagtgtaac tatagctgga
    11701 aaattatgtg agtctggtga tatcattatt aaagacgcta aattaccttc atcagtcaaa
    11761 cgtggagact atcttgctat attatcaact ggtgcatatc attactctat ggcatccaat
    11821 tacaatcaaa tgcaaaagcc ttctgtgttt ttcttaaaag atggcaaagc acgtgaagtt
    11881 ataaagcgac aatcgttaag acaactcatt attaatgata caaaataaaa ataaacaaag
    11941 taatccccga agcacagaaa attatactgt gactcgggga atttttatgc attatagatg
    12001 actgtagaaa acatgcttgg acatatactc taaaaaagga agaacagcac atttttagtt
    12061 agaaagtatt tatttctttt tgtcattaat cctttatatt tagttagccc tattcaacta
    12121 atttaaagca tcatatacat accacacttt aaacaagcat catgaaatta gattttatgc
    12181 tttacttgct ttttcaaata atataaaacg ataagaatta acaacaaata taatgtataa
    12241 aacagaattt catcaaatcc aaaatcttta cttgtaatta atacatcaat atcttctaat
    12301 tccatcatct ctgctttaat ataattatta aactttggca aagtcattaa atgtacattg
    12361 taaatatagt aataaaagtc gataaatatg atgttaaaaa atatgtatgt tttatcaata
    12421 ttagttttga aaaatagtat cccagaaatc attatcggaa tcactaatac aatcatcatt
    12481 gctgctaaaa tattaatatt taatccaatt gcagataata caccgaaaac taataaatta
    12541 gcaactaaac taaggataag atatttcata aaatcacctc gtcgttgtac accataatta
    12601 tattatataa atatattttt ctattgcaaa caatgttggt gatataaaaa aagagttctc
    12661 aatttggttg agaaactcat cgcgttaagt atttgtaata agcatataaa aacaccttac
    12721 ttcttggtaa ggtgttagtt aaaatcaatg attcaaatct aagaattata gtttaacaac
    12781 gtttgcagct tgtggaccgc ggtcgccttc aactacttca aactcaacag cttgaccttc
    12841 ttctaatgat ttgtaaccat cttggttaat tgctgaaaaa tgtacgaata cgtcattttc
    12901 tccttcaact tcgataaagc cgaatccttt ttcagcgtta aaccatttaa ctgtaccttg
    12961 tttcataatc tgaaacctcc aagactaaaa ttcattcaat atgcttattc gcatattaca
    13021 aaaaatacat gcaaatttca ctcaaatatt ctttgcaata tggaataatc atctgcttaa
    13081 cttgtattat agtgcagtta ttaccaaatt gcaatacaat aataaaaaat attcatttaa
    13141 tcaattattg gtagtttata atatacttca ttattttgta aaacaatgaa actataaaat
    13201 atttgtaaat cctcttcaca atcttcgcaa tagttcatgt cacaattatt ataaaatgca
    13261 taaatattat atttgcctgt gacatagtta tcgaactgaa ctttacattg attaatcaat
    13321 tgttgatagt gcttaaacat gtcatcaaaa tcttgatatt gatatttttc aacaatgttt
    13381 tctggccagt cactgaataa ccaccatccc tcataatcgg ctctaatttt ggtaactgtc
    13441 cacattatta aagacccctt ccatacttca aaaactctat acttattttt atacctttat
    13501 cctctgaaaa tcaagtttga cgacttgaaa caaacaaagt agtaactata gtaattatta
    13561 gtttttttaa gtaaaactac gtataataac attatgaggt ggtaaaaatg agacatatac
    13621 atttacaagt attcggacgc gttcaaggcg tcggatttag atattttaca caacgcattg
    13681 caatgaacta taacattgtc ggtactgttc aaaatgtaga tgactatgta gagatatatg
    13741 cacaagggga tgacgcagat atagagagat ttattcaagg tgtaattgaa ggtgcctcac
    13801 cagcatcaaa tgtaacaagc catcaacttg aagagttaga actaaatcaa aaattatcgg
    13861 attttcgatc aatataaaat gctaaataaa ggaagatgac agtgagatat aatatttctc
    13921 atatatttgg ggtgttagtg ggaattcctg tagcgttttt aacaagcata tttgggatga
    13981 ttgcacttga tgtatctttt ttaattgata tgtctattgg tattgttggc tttttaatga
    14041 catacctacc gatacaaaaa ctcacttcac gcaaatattt aaacgaaatt ggtttgacta
    14101 gaaaagacta tcgctatatt cgaaatcagt taaatcatac acaccaaaaa cttagaggta
    14161 ttttaaaaac gtatgtcaat ataagatcaa ttaaagattt taggcagatt aatgatatat
    14221 accaaatttc acgttctatt tatacgacag ttagacagag acctgcatca ttttataaag
    14281 ttgaaggctt tttttattct catattgata atgctttaaa tttggttgat gcatatacac
    14341 gtctagcaaa aatgcccaaa aaatcaatta atgaacagca aaagttagaa caaacacgaa
    14401 ttactttgga tgaggtcaaa cgaacattaa tcgctgattt aaagcgtctc aacgaagatg
    14461 attatgaacg tttagatatt gaaatggaat taaataagtt acatcaaaaa catcatcaag
    14521 attgatgtaa aatagcaact attggagaga tgattgatga ctgaaaataa aagtttcaaa
    14581 gaaagccatc cactagatga ttttataagc gataaagaat tatcgaatac tactattcaa
    14641 aaagaaaagt taacaattga acaacaaaaa caggtagaca caatcagtaa acaaattaac
    14701 cctttagaca atgaaggttt attagcgttt ggttctgatt tacagaaaca aatgtctcaa
    14761 ttttcacatc aaatgttgga tgaagtacaa agtaaagatg ttggtcctat tggagatact
    14821 ttgtcagatc taatgtcaaa actaaagtca gttaatccaa atgagttaaa tactgataaa
    14881 ccatctatgt taaaaagaat ttttagcaga gcaaagtcgt ctatcaatga aatcttttca
    14941 agaatgcaat cagttagtgc tcaagtcgat cgcataacga ttcaactgca gaaacatcaa
    15001 acacatttaa caagagatat tgaattatta gatacgctat atgataaaaa caaacaatac
    15061 tttgatgact tatcattgca tatcattgct gcacagcaaa aaaagttgca attagaaaat
    15121 gaaaagctac cacaattgca acagcaagcg cagcaatcca ctaatcaaat ggatattcaa
    15181 caagttgcag atatgcagca atttatagat agactagata aacgcatata tgacttacag
    15241 ctttcaagac aaatagcttt gcaaactgcg ccacaaattc gtatgattca aaatgttaat
    15301 caagcacttg ccgagaagat acaaagttca attttgacaa gtattccact atggaaaaat
    15361 caaatggcca ttgcgcttac attaatgaga cagcgtaatg cagttgctgc acaacgagct
    15421 gtcactgata caactaatga tttattaaca gcaaatgctg aaatgttgaa acaaaatgcg
    15481 attgaaactg caacagaaaa tgagcgtggc attgttgatc ttgatacatt gaaacgtaca
    15541 cagcgtaaca ttattgagac aattgaagaa acattaatta atcaacaaca cggtcgcgaa
    15601 gaacgacaat tagctgaaaa agaattacaa caattagaac aagatttaaa gtcacattta
    15661 gtgaacatca aaggaccgaa taaacaatca taaattacga attagatata acaaaaaaga
    15721 gcttgggaca ttaagttcct taaagttctt aggcaatgta aaaaagctga tttctatt
//
LOCUS       DAMQWL010000057        15495 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.057, whole genome shotgun sequence.
ACCESSION   DAMQWL010000057 DAMQWL010000000
VERSION     DAMQWL010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 15495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15495
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.057"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(74..982)
                     /locus_tag="PF788_001590"
                     /pseudo
     CDS             complement(74..982)
                     /locus_tag="PF788_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002440612.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
     gene            complement(1207..1419)
                     /locus_tag="PF788_001591"
                     /pseudo
     CDS             complement(1207..1419)
                     /locus_tag="PF788_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001625397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc peptidase"
     gene            complement(1494..3029)
                     /locus_tag="PF788_001592"
     CDS             complement(1494..3029)
                     /locus_tag="PF788_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HDG6303853.1"
                     /translation="MSNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRR
                     QYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNRMAFDFGTLGNHEFNYGLPY
                     LKDTLRRLNYPVLCANIYENDSTLTDNGVKYFQVGDQTVGVIGLTTQFIPHWEQPEHI
                     QSLTFHSAFEILQQYLPEMKRHADIIVVCYHGGFEKDLESGTPTEVLTGENEGYAMLE
                     AFSKDIDIFITGHQHRQIAERFKQTAVIQPGTRGTTVGRVVLSTDEYENLSVESCELL
                     PVIDDSTFTIDEDDQHLRKQLEDWLDYEITTLPYDMTINHAFEARVAPHPFTNFMNYA
                     LLEKSDADVACTALFDSASGFKQVVTMRDVINNYPFPNTFKVLAVSGAKLKEAIERSA
                     EYFDVKNDEVSVSADFLEPKPQHFNYDIYGGVSYTIHVGRPKGQRVSNMMIQGHAVDL
                     KQTYTICVNNYRAVGGGQYDMYIDAPVVKDIQVEGAQLLIDFLSNNNLMRIPQVVDFK
                     VEK"
     gene            complement(3080..4624)
                     /locus_tag="PF788_001593"
     CDS             complement(3080..4624)
                     /locus_tag="PF788_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HDG6303854.1"
                     /translation="MKKIYKSLTVSAIVATVSLSALPQSLAITHESQPTKQQRTVLFD
                     RSHGQTAGAADWVSDGAFSDYADSIQKQGYDVKAIDGHSNITEASLKSSKIFVIPEAN
                     IPFKESEQAAIVKYVKQGGNVVFISDHYNADRNLNRIDSSEAMNGYRRGAYEDMSKGM
                     NAEEKSSTAMQGVKSSDWLSTNFGVRFRYNALGDLNTSNIVSSKESFGITEGVKSVSM
                     HAGSTLAITNPEKAKGIVYTPEQLPAKSKWSHAVDQGIYNGGGKAEGPYVAISKVGKG
                     KAAFIGDSSLVEDSSPKYVREDNGEKKKTYDGFKEQDNGKLLNNITAWMSKDNDGKSL
                     KASSLTLDTKTKLLDFERPERSTEPEKEPWSQPPSGYKWYDPTTFKAGSYGSEKGADP
                     QPNTPDDHTPPNQNEKVTFDIPQNVSVNEPFEMTIHLKGFEANQTLENLRVGIYKEGG
                     RQIGQFSSKDNDYNPPGYSTLPTVKADENGNVTIKVNAKVLESMEGSKIRLKLGDKTL
                     ITTDFK"
     gene            4853..5809
                     /locus_tag="PF788_001594"
     CDS             4853..5809
                     /locus_tag="PF788_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate/phosphite/phosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HDG6303855.1"
                     /translation="MKNFKCLFVLMLAVIVFAAACGNSSSLDNQKNASNDSDSKSGGY
                     KPKELTVQFVPSQNAGTLEAKAKPLEKLLSKELGIPVKVSVSTNYNTIVEAMKSKKVD
                     VGFLPPTAYTLAHDQKAADLLLQAQRFGVKEDGSASKELVDSYKSEILVKKDSKIKSL
                     KDLKGKKIALQDVTSTAGYTFPLAMLKNEAGINATKDMKIVNVKGHDQAVISLLNGDV
                     DAAAVFNDARNTVKKDQPNVFKDTRILKLTQAIPNDTISVRPDMDKDFQEKLKKAFID
                     IAKSKEGHKIISEVYSHEGYTETKDSNFDIVREYEKLVKDMK"
     gene            6023..6796
                     /gene="phnC"
                     /locus_tag="PF788_001595"
     CDS             6023..6796
                     /gene="phnC"
                     /locus_tag="PF788_001595"
                     /EC_number="7.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
                     /protein_id="HDG6303856.1"
                     /translation="MSQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKS
                     TLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQHFNLVKRSSVLRNV
                     LSGRVGYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR
                     ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRI
                     IGLRDGEVVYDGPASEATDDVFSEIYGRTIKEDEKLGVN"
     gene            6798..7598
                     /gene="phnE"
                     /locus_tag="PF788_001596"
     CDS             6798..7598
                     /gene="phnE"
                     /locus_tag="PF788_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HDG6303857.1"
                     /translation="MPLEIPTKYDSLLKKKVSLKTSFTFMLIIVLIIWSFIYTGFNFG
                     DLMIGIPQIGDLFKQMIPPDFEYLQQITTPMLDTIRMAIVSTVLGSIVSIPIALLCAS
                     NIVHQKWISIPSRFILNIVRTIPDLLLAAIFVAVFGIGQIPGILALFILTICIIGKLL
                     YESLETIDPGPMEAMTAVGANKIKWIVFGVVPQAISSFMSYVLYAFEVNIRASAVLGL
                     VGAGGIGLFYDQTLGLFQYPKTATIILFTLVIVVVIDYISTKVRAHLA"
     gene            7595..8410
                     /gene="phnE"
                     /locus_tag="PF788_001597"
     CDS             7595..8410
                     /gene="phnE"
                     /locus_tag="PF788_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HDG6303858.1"
                     /translation="MTQEIAKYNVHTKAHKRKLIKRWLIAIVVLAIIIWAFAGVPSLE
                     LKSKSLEILKSIFSGLFHPDISYIYIPDGEDLLRGLLETFAIAVVGTFIAAIICIPLA
                     FLGANNMVKLRPVSGVSKFILSVIRVFPEIVMALIFIKAVGPGSFSGVLALGIHSVGM
                     LGKLLAEDIEGLDFSAVESLKASGANKIKTLVFAVIPQIMPAFLSLILYRFELNLRSA
                     SILGLIGAGGIGTPLIFAIQTRSWDRVGIILIGLVLMVAIVDLISGSIRKRIV"
     gene            complement(8541..9719)
                     /gene="deoB"
                     /locus_tag="PF788_001598"
     CDS             complement(8541..9719)
                     /gene="deoB"
                     /locus_tag="PF788_001598"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HDG6303859.1"
                     /translation="MTRPFNRVHLIVMDSVGIGEAPDAADFKDEGSHTLRHTLEGFDQ
                     TLPNLEKLGLGNIDKLPVVNAVEQPEAYYTKLSEASVGKDTMTGHWEIMGLNIMQPFK
                     VYPNGFPEELIQQIEEMTGRKVVANKPASGTQIIDEWGEHQMKTGDLIVYTSADPVLQ
                     IAAHEDIIPLEELYDICEKVRELTKDPKYLIGRIIARPYVGEPGNFTRTSNRHDYALK
                     PFGKTVLDHLKDGGYDVIAIGKINDIYDGEGVTEAVRTKSNMDGMDQLMKIVKKDFTG
                     ISFLNLVDFDALYGHRRDKPGYAQAIKDFDDRLPELFSNLKEDDLVIITADHGNDPTA
                     PGTDHTREYIPVIMYSPKFKGGHALESDTTFSSIGATIADNFNVTLPEFGKSYLKELK
                     "
     gene            complement(9747..10409)
                     /gene="deoC"
                     /locus_tag="PF788_001599"
     CDS             complement(9747..10409)
                     /gene="deoC"
                     /locus_tag="PF788_001599"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDG6303860.1"
                     /translation="MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVK
                     YAAERLADSEVLVCTVIGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRF
                     DDVQQDIEAVVKAAKGHTVKVIIETVLLDHDEIVKASELTKTAGADFVKTSTGFAGGG
                     ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADS
                     DY"
     gene            complement(10490..11842)
                     /gene="tet(38)"
                     /locus_tag="PF788_001600"
     CDS             complement(10490..11842)
                     /gene="tet(38)"
                     /locus_tag="PF788_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(38)"
                     /protein_id="HDG6303861.1"
                     /translation="MNVEYSKIKKAVPILLFLFVFSLVIDNSFKLISVAIADDLNISV
                     TTVSWQATLAGLVIGIGAVVYASLSDAISIRTLFIYGVILIIIGSIIGYIFQHQFPLL
                     LVGRIIQTAGLAAAETLYVIYVAKYLSKEDQKTYLGLSTSSYSLSLVIGTLSGGFIST
                     YLHWTNMFLIALIVVFTLPFLFKLLPKENNTNKAHLDFVGLILVATIATTVMLFITNF
                     NWLYMIGALIAIIVFALYIKNAQRPLVNKSFFQNKRYASFLFIVFVMYAIQLGYIFTF
                     PFIMEQIYHLQLDTTSLLLVPGYIVAVIVGALSGKIGEYLNSKQAIITAIILIALSLI
                     LPAFAVGNHISIFVISMIFFAGSFALMYAPLLNEAIKTIDLNMTGVAIGFYNLIINVA
                     VSVGIAIAAALIDFKALNFPGNDALSSHFGIILIILGLMSIVGLVLFVSLNRWTQSEK
                     "
     gene            complement(11849..12556)
                     /gene="deoD"
                     /locus_tag="PF788_001601"
     CDS             complement(11849..12556)
                     /gene="deoD"
                     /locus_tag="PF788_001601"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDG6303862.1"
                     /translation="MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNT
                     VRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENID
                     LYDVIIAQGASTDSNYVQQYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSD
                     IFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPE
                     ERERAFTDMIEIALSLV"
     gene            12792..13547
                     /locus_tag="PF788_001602"
     CDS             12792..13547
                     /locus_tag="PF788_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDG6303863.1"
                     /translation="MEVVYVTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCAR
                     FDVSRMTLRQAIKLLAEDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARV
                     SMSSINYRVDLESEYTNHLFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVID
                     TFKVNTQNEDDMKTFVEQTIYSNAYQSDLKMSITKAPHFKNHSHVFDGDTHCWLIIET
                     LYAQTPYPIMINKWYIPQEISELTLTRIRQSDY"
     gene            complement(13739..14464)
                     /gene="sasD"
                     /locus_tag="PF788_001603"
     CDS             complement(13739..14464)
                     /gene="sasD"
                     /locus_tag="PF788_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_070002951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-wall-anchored protein SasD"
                     /protein_id="HDG6303864.1"
                     /translation="MKKLATVGSLIVTSTLVFSSMPFQNAHADTTSMNVSNKQSQNVQ
                     NHRPYGGVVPQGMTQAQYTELEKALPQLSAGSNMQDYNMKLYDATQNIADKYNVIITT
                     NVGVFKPHAVRDMNGHALPLTKDGNFYQTNVDANGVNHGGSEMVQNKTGHMSQQGHMN
                     QNTHMNQQPHMQQGHMQSSNHQMMSPKANMHSSNHQMNQSNKKVLPAAGESMTSSILT
                     ASIAALLLVSGLFLAFRRRSTNK"
     gene            complement(14832..15431)
                     /locus_tag="PF788_001604"
     CDS             complement(14832..15431)
                     /locus_tag="PF788_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HDG6303865.1"
                     /translation="MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVE
                     GTELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDI
                     KAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLF
                     DVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK"
BASE COUNT         4998 a         2826 c         2415 g         5256 t
ORIGIN      
        1 tttaaaaacc aacaaaaaaa tacttatttt aagtagatga gcataagtga acatagttct
       61 ttagttataa taattaattc aaccaaaagt cgatttgttt ttgcaattgg ttttcatttc
      121 ctcttaaaga tattttcatt aaatctgtca aatcaataga cgctatattt ttcaacttat
      181 ctctatattt atttttagta cgtctttcta aatttcccca ttcctcttct tcgtgagtta
      241 ataaatgaag cattgctcgt tcttgtatat tttcaatcat ttttaaattc ggttttaaaa
      301 tatgcaaatc atcaaaacaa tctttccaac aatcaaccat atctcgtttt aattcaattt
      361 ccacacgcca tagaaatgtt gaatcaattt caacatctgc attatcttta cgttcttgtt
      421 tttattataa atccgaataa acctatcact attacgcaca ccaaaatatt ttgtttctgg
      481 ttttacatta cgtccataaa atatagtttt ctttaccgac ttatctgaca atgcataata
      541 gtcatttaaa tcaaattcaa aatcaaaagc caaatctaat ctcgtaaaac taacatcgtc
      601 caaataactg atgatatttt gttttaacca aagcacttca tcatgcgaaa gcttattagg
      661 attaaattca acgcgcatac tacgtctatt ccaaagagtt gcttttattt tgtcatattc
      721 aatataaact ttttctttaa gagctttagc tttaaagttt gtttgtaaaa tatcccaaag
      781 ccgaatttca ggattagtac tcataaaatg tgaaagtctc tctgcgttag acatgctaag
      841 attcccaaca atcgttatag cgtcaaaaga caattttgga atagctagtg acatcctatg
      901 tcgatttaac cggctattac cggatattag agtatccagt tttacaaatg gatgaaacga
      961 aattcaaaac actaaaaaat atgttccact aacagcaaaa aaataccatt atgttcctac
     1021 taaaaaacta aaaatactgg agaacaaatg tcaggatata acttaggata ctatgtaata
     1081 aaaatttaca ataaaaaaac aggaaaacaa atttcaagta aaagaatacc catacaaaga
     1141 ggataaaata aaaaacctcg aactgaaatg atgatctttt cagctcgagg tttaaatatt
     1201 ggtgccttat ttatatagat tcgttatatt atattctcta ttttcattaa cataatcctt
     1261 aaagagtttt aaattaatac ctgctagatg attcaaaaat gtttcatcaa cttttaaata
     1321 attcaataat ttttgtggtg tcagtaaatt tctatcaaaa tacaacttta ataaactatt
     1381 cattttgaca ggacgtgaca tttcaatcac gtcgtctaaa gataatactt tctcgcttta
     1441 aacaaaaaca aaaacttacc cgattaaaat caagtaagtt ttacatatat ccgtcacttt
     1501 tcaactttaa aatcaacaac ttgcgggatg cgcatcaaat tattatttga taaaaaatca
     1561 ataagtaatt gtgcgccttc aacttgaata tcttttacaa ctggcgcgtc gatatacata
     1621 tcatactgac caccgcctac tgcacgataa ttatttacac aaattgtata tgtctgcttt
     1681 aaatcaactg cgtgaccttg aatcatcata ttgctcacac gttgtccctt tggtcttcca
     1741 acatgaatgg tataacttac gccaccatat atatcataat taaagtgttg tggtttgggt
     1801 tcaaggaagt ctgcgctcac actaacttca tcatttttca cgtcaaaata ttctgctgat
     1861 cgttcaatgg cttctttaag tttggcacca cttacagcta aaactttaaa tgtatttgga
     1921 aatgggtaat tgttaataac atctcgcatc gtcacgactt gcttgaaacc actagcagaa
     1981 tcaaacaaag ctgtacaggc aacatctgcg tcactttttt ctaataaagc gtaattcata
     2041 aaatttgtaa aaggatgcgg tgccacacgt gcctcaaatg catgattaat cgtcatatca
     2101 tatggcaatg tagtaatttc gtaatctaac cagtcctcta actgctttcg taaatgttgg
     2161 tcatcttcat caatagtaaa tgtggaatca tctataacag gaagtaattc acatgattca
     2221 acggatagat tttcatattc atcagtactc aagactactc tgcctacagt tgtacctctc
     2281 gtaccaggtt gaatcacagc cgtttgctta aacctttcag caatttgtcg atgttggtga
     2341 cccgtaataa agatatctat atctttagaa aacgcttcta acatggcata tccttcattt
     2401 tcacccgtta atacttcggt cggcgtacca ctttctaaat ccttttcaaa tccaccatgg
     2461 taacaaacca caatgatatc tgcatgtcgc ttcatttcag gtaagtattg ttgaagtatt
     2521 tcaaaagcac tatgaaacgt aagtgactga atatgctctg gttgttccca atggggaata
     2581 aattgtgtcg ttaaacctat cacaccaaca gtttgatctc caacctgaaa atacttcaca
     2641 ccgttatcag tcaatgtact atcattttca tatatattag cgcacaaaac tggataattg
     2701 agtctgcgta aagtgtcttt taagtatggt aatccataat taaattcatg attaccaagc
     2761 gtaccaaagt cgaatgccat tcgattataa aaatcaacta aaggctggct actgccgcta
     2821 tgcgcgatta agtaattaca aaatggtgac ccttgcaaaa aatcaccatt atctatttta
     2881 aaactttggt catactgcct tctgtcttgt tctataacat gattcgctag taacaatccc
     2941 ataggttgat attgatttct actcgtaaaa tctgttggga aaatataacc atgtacgtca
     3001 ctcacgacat aaaatgctat gtttgacatc ctcactcact ccttcaatca caaacatctt
     3061 tcttatttct attatatatt tatttgaagt ctgttgtaat caaggttttg tcaccgagtt
     3121 ttaaacgaat ctttgaacct tccatacttt caagtacttt agcattgacc ttaattgtga
     3181 catttccgtt ttcatctgct ttaactgttg gcaaagtact gtaacctggt gggttataat
     3241 cgttatcttt acttgaaaat tgtccgattt gacgtccgcc ttctttgtaa ataccaactc
     3301 taagattttc aagtgtttga tttgcttcaa atccttttaa atgtattgtc atttcaaatg
     3361 gctcatttac agaaacattt tgcgggatat caaatgttac tttttcgttc tgatttggtg
     3421 gtgtatgatc atctggtgtg tttggctgag gatctgcgcc tttttcgctg ccataactac
     3481 ctgctttaaa tgttgttgga tcataccatt tataaccact cggcggttgt gaccatggct
     3541 ctttttcagg ctcagttgaa cgctctggtc gttcaaaatc aagcaactta gtctttgtat
     3601 ctaatgttag gctactcgcc ttaagtgatt tcccatcatt atctttagac atccaagccg
     3661 ttatattatt taatagctta ccgttgtctt gttctttaaa accatcatat gttttcttct
     3721 tttctccatt atcttctctt acatatttgg gcgaactatc ttccacaagt gatgaatcac
     3781 cgataaatgc tgctttacct tttccaactt tagaaattgc tacatagggg ccttctgctt
     3841 taccgccccc attataaata ccttgatcta cagcatgtga ccatttactt ttcgctggca
     3901 attgttctgg tgtatacaca ataccttttg ctttctctgg attagtaatt gctaatgtcg
     3961 atccggcatg catagagaca gatttcacac cttcagtaat accgaaactt tcttttgaag
     4021 aaacaatatt gctcgtattt aaatcaccta gtgcattata tcgaaaacgt acgccaaagt
     4081 ttgtagataa ccaatctgaa cttttcacac cttgcattgc agtagaactt ttttcttctg
     4141 cattcatacc tttcgacata tcttcatatg ctccacgtcg ataaccattc attgcctccg
     4201 atgaatcaat acgatttaaa tttcggtcag cattgtaatg atctgaaata aagacaacat
     4261 tgccaccttg tttcacatat ttaacaattg ctgcctgttc tgattctttg aaaggaatgt
     4321 tagcctcagg aattacaaat attttggaac ttttcaaact tgcttctgtt atgttcgaat
     4381 gaccatcaat agctttaacg tcataacctt gtttttgtat tgaatccgca taatctgaaa
     4441 atgcaccatc actaacccaa tctgcagcac cagctgtttg accatgagaa cgatcgaata
     4501 ataccgttcg ctgttgcttt gtaggttgcg attcatgcgt tatagctaaa gattgcggta
     4561 aagcacttaa tgataccgtt gcaacaattg cagagacagt taatgactta tatatttttt
     4621 tcattttgtg aggctccttt taaaataaat ttgttcttga attataggat aaaaattcgt
     4681 tgcatatgag caatttaacg aaaaatttac aaaatcttat caaactctta aagaaagtta
     4741 ttaaaattca tttttataaa atacttttta acatttaaat gtggtacgct ataagtgtaa
     4801 tttcattgca tacatattac acgattaaga atgtgaaggg gacagttatc aaatgaaaaa
     4861 ttttaagtgt ttatttgtat taatgttagc agtcattgtt tttgcagcag catgtggaaa
     4921 ctcaagttct ttagataatc aaaagaacgc tagtaatgat tcggattcta aatcaggagg
     4981 atacaaacct aaagaattaa ccgttcaatt tgtaccttcg caaaatgctg gaacattaga
     5041 agctaaagca aaaccattag aaaaattact atctaaagaa ttagggattc cagttaaagt
     5101 gtctgtatca actaactaca atacaattgt tgaagctatg aagtctaaaa aagttgatgt
     5161 tggtttctta ccaccaacgg catacacatt agcacatgat caaaaagcag ctgatttatt
     5221 attacaagca caacgtttcg gtgtaaaaga agatggttca gcaagtaaag aacttgtaga
     5281 tagttataaa tcagaaattc ttgttaaaaa agactcaaaa attaaaagct tgaaagattt
     5341 aaaaggtaag aaaattgcct tacaagatgt aacatcaact gctggatata cattcccact
     5401 tgcgatgtta aaaaacgaag caggtattaa tgcaactaaa gatatgaaaa ttgtgaatgt
     5461 taaaggtcat gaccaagcag ttatctcatt attaaatgga gatgtagatg ctgcggctgt
     5521 atttaacgat gcacgtaata ctgtgaaaaa agaccaacca aatgtattta aagacacacg
     5581 aattttaaaa ttaacacaag ctattccgaa tgacacaatt tctgtaagac cagatatgga
     5641 taaagatttt caagaaaaat tgaaaaaagc ttttatagac attgctaaat caaaagaagg
     5701 tcacaaaatt attagcgaag tttattcaca tgaaggatac acagaaacga aagattcaaa
     5761 tttcgacatt gtaagagagt acgaaaaatt agttaaagat atgaaataat cattatttaa
     5821 caaatgaatc attagcgaat ttggtattaa aagctttcgt tcaatagata tattctagat
     5881 taatattgaa aagctaggcg ctaaactgaa acagatatag aaaggtgtcg ctgtacattt
     5941 gaaaccattt gtacacagaa acccaatgtc tatgatattt cagtttacct tggcttttct
     6001 ttattaaaga aaggtgtcaa acatgagtca aatcgaattt aaaaacgtca gtaaagtcta
     6061 tcctaacggt catgtaggct tgaaaaatat taacttaaat attgaaaaag gtgaatttgc
     6121 agttattgtc ggactatctg gtgctgggaa atccacgtta ttaagatctg taaatcgttt
     6181 gcatgatatc acgtcaggtg aaattttcat ccaaggtaaa tcaatcacta aagcccatgg
     6241 taaagcatta ttagaaatgc gccgaaatat aggtatgatt ttccaacatt ttaatttagt
     6301 taaacggtca agtgtattac gaaatgtact aagtggacgt gtaggttatc accctacttg
     6361 gaaaatggta ttaggtttat tcccaaaaga agacaaaatt aaggcaatgg atgcactaga
     6421 acgcgtcaat atcttagata aatataatca acgctctgat gaattatcag gtggccaaca
     6481 acaacgtata tctattgcac gtgcgctatg ccaagaatct gaaattattc ttgcagatga
     6541 accagttgct tcattagacc cattaactac gaaacaggtt atggatgatt taagaaaaat
     6601 caaccaagaa ttaggcatca caattttaat taatttacat tttgttgact tggcaaaaga
     6661 atatggcaca cgcatcattg gtttacgtga tggtgaagtt gtctatgatg gtcctgcatc
     6721 tgaagcaaca gatgacgtat ttagtgaaat atatggacgt acaattaaag aagatgaaaa
     6781 gctaggagtg aactaacatg cctttagaaa tacctacaaa gtatgactcc cttttaaaga
     6841 aaaaggtttc tttaaaaacg agttttacct tcatgttaat cattgtgctt atcatttgga
     6901 gcttcattta tacgggattt aattttggag atttaatgat aggaatacct caaataggtg
     6961 atctattcaa acaaatgatt ccacctgatt tcgagtattt acaacaaatt acaacgccaa
     7021 tgttagatac cattcgaatg gctatcgtaa gtacagtatt aggtagcatc gtttcaatac
     7081 caattgcgtt attatgtgct agcaatatcg ttcatcaaaa gtggatttca ataccctcgc
     7141 gctttatttt aaatatagtt cgtactattc cagatttgtt attagcagca atctttgtgg
     7201 ctgtatttgg aatcggtcaa attccaggga tattagcact gtttatttta actatctgta
     7261 ttattggaaa attattatat gaatcattgg aaacgataga tccaggtcca atggaagcaa
     7321 tgacggctgt tggcgctaat aaaataaaat ggattgtttt cggtgttgta ccacaagcca
     7381 tatcgtcatt tatgtcatac gtattatatg catttgaagt aaatatacgt gcttcagctg
     7441 tgcttggatt agtcggcgct ggcggtattg gattgtttta tgatcaaaca cttggtttat
     7501 ttcaatatcc aaaaacagca acgattattt tatttacttt agttatcgtc gtcgtcattg
     7561 attacatcag tacgaaagtg agggcacatc tcgcatgaca caggaaatag caaaatataa
     7621 tgttcacaca aaagcacaca aacgaaaatt gattaaaaga tggcttattg caattgtcgt
     7681 cttagctatt atcatctggg catttgcagg tgtaccaagt ttagaactta aaagtaaatc
     7741 attagaaatc ttaaaatcca tattcagcgg attattccat cctgatatca gctatatcta
     7801 tataccagat ggcgaagact tattacgtgg tttacttgaa acctttgcga tagccgttgt
     7861 aggtactttc atcgccgcaa ttatctgtat tccattagca tttctaggtg caaataatat
     7921 ggtaaagcta cgcccagttt caggtgttag caaatttatt ttaagtgtta tacgtgtctt
     7981 cccagaaatt gtaatggcac ttatatttat caaagctgtt ggcccaggtt cattttcagg
     8041 tgtattagct ttaggtatcc attccgtagg tatgcttggg aaacttttag ctgaagatat
     8101 tgaaggtcta gatttcagtg ctgtagaatc attaaaggcc agtggtgcga ataagattaa
     8161 aacactcgta tttgcagtca taccacaaat tatgcctgcc tttctatcac tcatacttta
     8221 tcgctttgaa ctaaacttac gttcagcttc tatactgggg ctaattgggg ctggtggtat
     8281 cgggacacca ctcatatttg ccattcaaac acgttcttgg gaccgtgtag gtattatatt
     8341 aatcggttta gtactaatgg tcgcaattgt cgatttaatt tccggttcaa tccgaaaacg
     8401 tattgtttaa cattaaatca ggatactcct aaataagaag tcctaccgtc ttacgtttct
     8461 ctattataat aaaaacagca gtgaagaaaa ctattgttat agttaacttc actgctgttt
     8521 ttataatatc taaatttatt ctatttcaat tcctttaaat aacttttacc gaactctggt
     8581 aatgttacgt tgaaattatc tgctatagtt gcaccgatag aactgaatgt agtatcactt
     8641 tctagtgcat gaccaccttt aaatttcgga ctgtacataa ttactgggat atattctctc
     8701 gtatggtccg tacctggcgc tgtcgggtca ttaccatggt ctgctgtaat aattactaaa
     8761 tcgtcttctt ttaagttgct aaacagttct ggcaagcgat catcgaaatc tttaattgct
     8821 tgtgcataac ctggtttatc acgacgatga ccgtataatg catcaaagtc tactaagttt
     8881 aagaagctaa tacctgtgaa atctttctta acaattttca tcaattgatc cataccgtcc
     8941 atgttactct tcgtacgaac cgcttctgtt acaccttcac catcataaat gtcattaatt
     9001 ttaccgatgg caataacatc ataaccaccg tctttcaaat gatctaagac agttttacca
     9061 aaaggtttta acgcatagtc atgtcgatta gatgtacgtg taaagtttcc tggttcacca
     9121 acatatggac gtgcgataat acgaccaatt aaatatttag ggtcttttgt caactcacga
     9181 accttttcac aaatatcata taactcttct aatgggataa tgtcttcatg tgcagcaatt
     9241 tgcaatactg ggtctgcact tgtataaaca attaagtcac cagttttcat ttggtgctcg
     9301 ccccactcat cgataatttg cgtacccgat gccggtttgt tagcaacaac tttacgacct
     9361 gtcatttctt caatttgttg aattaactct tcagggaatc cattagggta tactttaaaa
     9421 ggttgcataa tatttaatcc cataatttcc cagtgaccag tcattgtatc tttaccaact
     9481 gaagcttcac tcaatttagt atagtatgct tctggttgtt caactgcatt tactactggt
     9541 aatttatcga tgttccctag acctaacttt tcaaggtttg gtaaagtttg atcgaaacct
     9601 tctaaggtat gtcttaaagt atgtgaacct tcatctttaa aatcagctgc gtctggcgct
     9661 tcaccaatac ctactgaatc cattacgatt aaatgtacac gattaaatgg tcttgtcata
     9721 gctatcactc ccaaaattta tatatattag taatctgaat ctgcttctaa accttgcata
     9781 atttgaacac ctgcgctcgc accaatacgt gtcgcacctg cttcaaccat tttattgaaa
     9841 tcttctaaat tacgtacgcc acctgatgct tttacttcta catcagcacc tactgtatct
     9901 ttcattaatt taacgtcttc tgcagtcgca ccgccacctg caaaacctgt tgaagtttta
     9961 acgaagtccg caccagccgt ttttgttaat tcactcgctt ttacaatttc gtcatggtcc
    10021 aacaataccg tctcaataat cacttttact gtgtgacctt tcgcagcttt aaccactgct
    10081 tcaatgtctt gttgtacatc atcaaaacgt ccatctttta atgcgccgat gttgatgacc
    10141 atgtcaattt catctgcacc attttgaatt gcatcttctg tttcaaatgc tttcgttgca
    10201 gttgtcgacg cacctaatgg gaatcctatt accgtacaaa cgagcacctc tgaatcagct
    10261 agtcgctctg ctgcatattt aacatgtgtt ggattcacac atacagattt aaaattgtat
    10321 gctttcgctt catcgatgat ttgatcgatt tgcgtacgtg ttgactcagg cttcaataaa
    10381 gtgtgatcta tatatttctc aaatttcata cttactactc ctcgtgttat ataatctctt
    10441 tatttaattt tactataaat acgaatatat ctcgcgaatt tatatctatt tatttttcag
    10501 attgtgtcca acgatttaag ctgacgaata aaactaatcc gacaatactc attaaaccta
    10561 aaataattaa aataataccg aaatgtgaac ttaatgcatc attgcctggg aaatttaatg
    10621 ctttaaaatc gattagagcc gcagcaatcg caatacctac agataccgcc acattaataa
    10681 ttaaattata aaaaccaata gccacacctg tcatattaag atctattgtt ttaatggctt
    10741 cgttaagtaa aggtgcatac attaaagcaa agctacctgc aaagaatatc atagaaatga
    10801 cgaagattga aatgtgatta cctactgcaa atgcaggtaa aatcaagctc agtgctatta
    10861 aaataattgc tgtgataatc gcttgttttg aattcagata ttcgccgatt ttaccactta
    10921 gtgcaccaac aatgactgct actatataac ccggtactaa taacagtgat gttgtgtcta
    10981 gttgcagatg ataaatttgc tccattatga atgggaacgt aaaaatataa cccaattgga
    11041 tagcatacat tacaaatact ataaataaaa atgaagcata acgtttattt tggaaaaatg
    11101 atttatttac taatggacgt tgcgcatttt taatatatag cgcaaaaacg ataatcgcaa
    11161 ttaaggcacc aatcatatat aaccaattaa agttcgtaat aaacagcatg actgttgtag
    11221 caatagttgc cactagaatt aagccaacaa aatctaaatg agctttattc gtattatttt
    11281 cttttggtaa taatttaaat aggaatggca acgtaaatac tacgattaat gcaattaaaa
    11341 acatatttgt ccagtgtaaa tacgtagaaa taaatccacc tgataatgta ccgataacta
    11401 atgacaagga ataactgctc gtacttaagc caaggtaagt cttctggtcc tctttagaaa
    11461 gatactttgc aacatatatc acatataatg tctctgcagc agctaaaccg gcagtttgaa
    11521 taatacgtcc aactaaaagt aatgggaatt gatgttggaa aatgtaacca ataattgatc
    11581 cgataatgat taatatcacg ccataaataa atagtgtgcg tatactaatg gcatcagata
    11641 atgaagcgta tactacagcg ccaataccaa ttactaaacc ggctaatgtc gcttgccaac
    11701 ttactgtcgt tacagatatg tttaagtcat cagcaatggc tacagaaatc aatttaaatg
    11761 agttgtctat aaccaaactg aatacaaata agaataataa aataggtact gctttcttta
    11821 ttttagaata ttcaacattc ataatcatct acaccaatga cagtgcaatt tcaatcatat
    11881 ctgtaaatgc acgttccctt tcctcaggtg ttgttgacgt ttcatgaatt aaatgatcgc
    11941 tcactgtgaa cacacctaat gcttcgacac cagcgtaaat tgcattcatg tataatgcag
    12001 ctgattccat ttctacacct aaaataccca tacgcatcca acgttcactc gctgttgtat
    12061 ccgcgttata gaaaatatca cttgataaca cattacctac atgatgacgt acacctttgt
    12121 cacgtgctgt ttcaactgct ttttctaata attgataaga agcaattggc gcaaaatgac
    12181 ctggtaattg atattgttga acgtaatttg aatcagtaga ggcaccttgt gcaataatca
    12241 catcatataa atcaatgttt tcttgcatcg cgccacaaga gccaacgcga attaattttt
    12301 tacaaccaaa tgtatgaatt aattcataag agtaaatgcc aatagatggc atacccatac
    12361 ctgaacccat gacagaaact tttttacctt tatatgttcc ggtaaaacca aacatgtttc
    12421 gcactgtatt gaactgttcc acatcatcca aataagtttc tgcaatgaac ttagctctta
    12481 acggatctcc tggcaataga accgtttctg caatttcgac gtcattcatt ggtttaatgt
    12541 gtggtgttga tttcataaaa tattcctccc aatatttgta tagtgatttg tctatttgtc
    12601 taaccatgta tataataata ttttttaaaa gcgctttcaa gcattacatt ttgacaatat
    12661 taagaacatt ttacagttac agctactaac cttgtataaa actaattttc aaagcctatc
    12721 tatatttaat ttttataatt tttccaattt gagtaaaaat tattgtatga tgagagtgat
    12781 taagtaactt tatggaggtt gtctacgtga cgcaaacaca accaaaattt ttaacgattt
    12841 ataatacgtt atataaagaa attcaaatag gaaaatatcc gagtggccat gcattaccta
    12901 ctgaaaagga actttgtgcg cgctttgatg tcagtcgtat gactttgcgc caagctataa
    12961 aattgttagc cgaagatggc atcgtagaga gtacaagagg gaagggacac tttgttattc
    13021 cacaaacaaa tgcccaacac gcttcaagta tggatcaatt taagcatcca cttgatcaaa
    13081 tattgctagc tcgcgtatct atgtcatcaa ttaattatcg tgttgattta gaaagtgaat
    13141 atacaaatca tttgtttgca aaccatcctt ctgccgtcat tgcaatggaa cgctattatc
    13201 aaaaaaagga caatcattct aagcaagctg atgcattttg ctttaccttt ataccgttaa
    13261 atgtcattga cacatttaaa gtgaatacac aaaacgaaga cgacatgaag acattcgttg
    13321 agcaaacgat ttatagcaat gcatatcaat cagatttaaa aatgtctatt accaaagcgc
    13381 cccacttcaa aaatcatagt cacgtgtttg atggtgatac acattgttgg ctgattattg
    13441 aaacactgta cgcacaaaca ccttatccaa ttatgattaa taagtggtat attccacagg
    13501 aaatatctga attaacactg acacgtataa gacaatcgga ttattaaaaa ttattaaaat
    13561 ataagaaatt ttttgatgac tatttaggga gttggtaaga aatggaaaag cttgttacaa
    13621 gcgcaatttc attcagtcaa ctactgccaa tataacatta gcgagcctag gacattgatt
    13681 tatgtcctag gctcgctcag ataatcacac gatttttcta ttattaatcg tattatgttt
    13741 atttatttgt tgaacgtcgt ctaaatgcta agaataaccc agatactaat agtagtgcgg
    13801 caatacttgc agtaagaata cttgatgtca tactttcacc agcagctggt aaaacttttt
    13861 tgttactttg gttcatttga tgatttgatg aatgcatatt tgcttttgga ctcatcattt
    13921 gatggtttga tgattgcata tgaccttgtt gcatgtgtgg ctgttggttc atgtgtgtgt
    13981 tctgattcat atggccttgt tgactcatat gacctgtttt attttgcacc atttcactac
    14041 caccatgatt aacaccattt gcatctacat tcgtttgata aaaattgcca tcttttgtta
    14101 aaggtaacgc atggccattc atatctctaa cagcatgtgg tttaaatacc cctacattag
    14161 ttgtaattat cacattgtat ttatcagcaa tattttgcgt cgcatcatac aatttcatat
    14221 tatagtcttg catattactg ccagcgctta attggggtaa agctttctct aattcagtat
    14281 attgtgcttg cgtcattcct tgtggtacta ctccgccata aggacgatga ttttgtacat
    14341 tttggctttg tttattcgac acattcattg aagttgtgtc ggcatgcgca ttttgaaaag
    14401 gcatacttga gaatactaaa gtgcttgtta caattaaaga acctactgtt gctaattttt
    14461 tcattgtctt gtccccttat attacaattt gattacattt acattatcat acgattacaa
    14521 aagaaatgca acaaaatttt tgaatcatta cattttttta taaaaatttc actttagatt
    14581 cacaataatt acttattttg tcaatttatt taatgtcaat atgttgatta attaatagtg
    14641 ttgtctaatg tatataatat ttaggtcatc gttatagtca acaataataa ggtatttcga
    14701 gttgaaattt atcttattat ttttccactt ttacgtgcta tcccattaca caaaaacaaa
    14761 taagtaaaga tattaagtac aaaaaagtgg aacaccttgt agatgctcca cctcaattat
    14821 attaagttat attattttgc tgcttggtat aattcatcaa cttttttcca gttaacaatg
    14881 ttccaaaatg cagtcatata gtctggacgt ttattttgat atttcagata gtaggcatgc
    14941 tcccaaacat caaatagtaa gattggtgtt ttgccttctg ttaatggatt atcttggttt
    15001 ggcgttgtca caatttctaa tttgccatca ttaacaacta accaagtcca acctgatcca
    15061 aataatgttg ttgctttatt tgcaaattca tttttaaatt catctaaagt gccccactgc
    15121 gctttgatgt catctattac gccacctttt tcttcagaat taggtgatag tatttcccag
    15181 aataatgaat ggttaaaatg accaccgcca ttattacgga ctgacatcct catcgcttcc
    15241 ggtaccttgt ctaagttagc aatcatatcc gctagtgatt gatgctctaa ctctgttcct
    15301 tcaactgttg cgtttaattt cgtcacgtac gtattgtgat gtttgtcgtg atgaaactcc
    15361 attgttcttt gatctatata tggttccaat gcatcatatg catatggtaa atttggtaat
    15421 ttaaatgcca taagtatatt cctcctttta tgaatatact tttataataa ttaatttcgg
    15481 gtgtgttttg caata
//
LOCUS       DAMQWL010000058        15254 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.058, whole genome shotgun sequence.
ACCESSION   DAMQWL010000058 DAMQWL010000000
VERSION     DAMQWL010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 15254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15254
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.058"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            63..1214
                     /locus_tag="PF788_001605"
     CDS             63..1214
                     /locus_tag="PF788_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family nicotinamide mononucleotide
                     deamidase-related protein"
                     /protein_id="HDG6303866.1"
                     /translation="MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGD
                     NKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHTVAQIVGKDLVIDEPSLKYIESY
                     FEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
                     KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIR
                     LTANADSKEQAQSLIQPVKQEILDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITN
                     GALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFVNKLFNVSSAIILLE
                     YDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN"
     gene            1379..2422
                     /gene="recA"
                     /locus_tag="PF788_001606"
     CDS             1379..2422
                     /gene="recA"
                     /locus_tag="PF788_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499795.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDG6303867.1"
                     /translation="MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSV
                     TLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEY
                     AQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
                     THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYS
                     SVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDL
                     GVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDRKLREKLGISDGDVE
                     ETEDAPKSLFDEE"
     gene            2776..4335
                     /gene="rny"
                     /locus_tag="PF788_001607"
     CDS             2776..4335
                     /gene="rny"
                     /locus_tag="PF788_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002459258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HDG6303868.1"
                     /translation="MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVN
                     QAHKEADNIKKEKLLEAKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSD
                     LLDKKDEILEQKESKIEEKQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQ
                     RVEEELSQDIAVLVKEKEKEAKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPND
                     EMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDG
                     RIHPGRIEDMVEKARKEVDDIIREAGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQN
                     VLKHSIEVAHLASMLAAELGEDETLAKRAGLLHDVGKAIDHEVEGSHVEIGVELAKKY
                     GENETVINAIHSHHGDVEPTSIISILVAAADALSAARPGARKETLENYIRRLERLETL
                     SESYDGVEKAFAIQAGREIRVIVSPEEIDDLKSYRLARDIKNQIEDELQYPGHIKVTV
                     VRETRAVEYAK"
     gene            complement(4632..4847)
                     /locus_tag="PF788_001608"
     CDS             complement(4632..4847)
                     /locus_tag="PF788_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303869.1"
                     /translation="MSINIDPEKFAELVVMSNPSKFEDAEDIAKESLKLYINAYRLAE
                     RYSTIATNCYDTAEVIKELKKTDLQLK"
     gene            5021..5818
                     /locus_tag="PF788_001609"
     CDS             5021..5818
                     /locus_tag="PF788_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HDG6303870.1"
                     /translation="MRIMFIGDIVGKIGRDAIETYIPQLKQKYKPTVTIVNAENAAHG
                     KGLTEKIYKQLLRNGVDFMTMGNHTYGQREIYDFIDEAKRLVRPANFPDEAPGIGMRF
                     IQINDIKLAVINLQGRAFMPDIDDPFKKADQLVKEAQEQTPFIFVDFHAETTSEKYAM
                     GWHLDGRASAVVGTHTHIQTADERILPKGTGYITDVGMTGFYDGILGINKTEVIERFI
                     TSLPQRHVVPNEGRSVLSGVVIDLDKEGKTKHIERILINDDHPFSTF"
     gene            5958..7718
                     /locus_tag="PF788_001610"
     CDS             5958..7718
                     /locus_tag="PF788_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HDG6303871.1"
                     /translation="MKPQLSWKVGGQQGEGIESTGEIFATAMNRKGYYLYGYRHFSSR
                     IKGGHTNNKIRVSTTPVHAISDDLDILIAFDQETIDVNHHEMREDSIILADAKAKPVK
                     PEGCHAQLIELPFTATAKELGTALMKNMVAIGATSALMNLNTNTFEELITNMFSKKGD
                     KVVEVNIQALNEGYQLMQSRLPEIYGDFELESTDALPHLYMIGNDAIGLGAIAAGSQF
                     MAAYPITPASEVMEYMIANISKVNGAVIQTEDEIAAVTMAIGANYGGVRAFTASAGPG
                     LSLMMEAIGLSGMTETPLVIINTQRGGPSTGLPTKQEQSDLMQMIYGTHGDIPKIVVA
                     PTDAEDAFYLTMEAFNLAEQYQCPVIVLSDLQLSLGKQTVEKLDYNRIEIKRGEIIQS
                     DIEREEDDKGYFKRYALTSDGVSPRPIPGVKGGIHHITGVEHNEEGKPSESASNRQQQ
                     MEKRMRKIEQLLIESPVEANLQHEDADILYIGFISTKGAIQEGSNRLNQQGIKVNTIQ
                     IRQLHPFPTSVIQDAVNKAKKVVVVEHNYQGQLASIIKMNVNIHDKIENYTKYDGTPF
                     LPHEIEEKGKIIATEIKEMV"
     gene            7719..8585
                     /locus_tag="PF788_001611"
     CDS             7719..8585
                     /locus_tag="PF788_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HDG6303872.1"
                     /translation="MATFKDFRNNVKPNWCPGCGDFSVQAAIQKAAANIGLEPEEVAI
                     ITGIGCSGRLSGYINSYGVHSIHGRALPLAQGVKMANKDLTVIASGGDGDGYAIGMGH
                     TIHALRRNMNMTYIVMDNQIYGLTKGQTSPSSAVGFVTKTTPKGNIEKNVAPLELALS
                     SGATFVAQGFSSDIKGLTKLIEDAINHDGFSFVNVFSPCVTYNKINTYDWFKEHLTSV
                     DDIENYDSTDKQLATKTVIEHESLVTGIVYQDKETPSYESQIKELDDTPLAKRDIKIT
                     EDTFNALTEQFI"
     gene            8679..8972
                     /locus_tag="PF788_001612"
     CDS             8679..8972
                     /locus_tag="PF788_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-binding protein"
                     /protein_id="HDG6303873.1"
                     /translation="MKDTLMSIQIIPKTPNNDNVIPYVDEAIKIIDESGLHFRVGPLE
                     TTVQGNMNECLILIQSLNERMVELECPSIISQVKFYHVPDGITIETLTEKYDE"
     gene            9106..10650
                     /gene="miaB"
                     /locus_tag="PF788_001613"
     CDS             9106..10650
                     /gene="miaB"
                     /locus_tag="PF788_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDG6303874.1"
                     /translation="MNEEQRKASSVDVLAERDKKAEKDYSKYFEHVYQPPNLKEAKKR
                     GKQEVRYNRDFQIDEKYRGMGNERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDI
                     NTADVILINTCAIRENAENKVFSEIGNLKHLKKERPDILIGVCGCMSQEESVVNKILK
                     SYQNVDMIFGTHNIHHLPEILEEAYLSKAMVVEVWSKEGDVIENLPKVREGNIKAWVN
                     IMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRELAREGYKEITLLGQNVNSYGKDL
                     QDIEYDLGDLLQAISKIAIPRVRFTTSHPWDFTDHMIDVISEGGNIVPHIHLPVQSGN
                     NAVLKIMGRKYTRESYLDLVKRIKDRIPNVALTTDIIVGYPNESEEQFEETLTLYDEV
                     GFEHAYTYLYSQRDGTPAAKMKDNVPLNVKKERLQRLNKKVGHYSQIAMSKYEGQTVT
                     VLCEGSSKKDDQVLAGYTDKNKLVNFKAPKEMIGKLVEVRIDEAKQYSLNGSFIKEVE
                     PEMVIQ"
     gene            10651..11016
                     /locus_tag="PF788_001614"
     CDS             10651..11016
                     /locus_tag="PF788_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RicAFT regulatory complex protein RicA family
                     protein"
                     /protein_id="HDG6303875.1"
                     /translation="MYNKDDVLNQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKM
                     DMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEINTLPIVEQFQTSQYEANQLLKM
                     FVSTMETRLNDHNKAKHSD"
     gene            11043..11534
                     /gene="thiW"
                     /locus_tag="PF788_001615"
     CDS             11043..11534
                     /gene="thiW"
                     /locus_tag="PF788_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy coupling factor transporter S component
                     ThiW"
                     /protein_id="HDG6303876.1"
                     /translation="MKSRKLAITALLIAINVVLSSIIIIPLGPVKAAPVQHFVNVLSA
                     VIVGPWYGLAQALISSILRVLFGTGTAFAFPGSMIGVLLASMFYIYRKHIFMAAVGEV
                     LGTGVIGSLICIPLAYFLGLQDFFIKPLMITFIVSSAIGSIISYFLLITLKKRGILQR
                     FIK"
     gene            11837..14455
                     /gene="mutS"
                     /locus_tag="PF788_001616"
     CDS             11837..14455
                     /gene="mutS"
                     /locus_tag="PF788_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDG6303877.1"
                     /translation="MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRV
                     LEITLTKRDAKKENPIPMCGVPYHSADSYIDTLVNNGYKVAICEQMEDPKQTKGMVRR
                     EVVRIVTPGTVMEQGGVDDKQNNYILSFVMNQPEIALSYCDVSTGELKVTHFNDEATL
                     LNEITTINPNEVVINDNISDNLKRQINMVTETITVRETLSSEIYSVNQTEHKLMYQAT
                     QLLLDYIHHTQKRDLSHIEDVVQYAAIDYMKMDFYAKRNLELTESIRLKSKKGTLLWL
                     MDETKTPMGARRLKQWIDRPLISKEQIEARLDIVDEFSAHFIERDTLRTYLNQVYDIE
                     RLVGRVSYGNVNARDLIQLKHSISEIPNIKALLNSMNQNTLVQVNQLEPLDDLLDILE
                     QSLVEEPPISVKDGGLFKVGFNTQLDEYLEASKNGKTWLAELQAKERQRTGIKSLKIS
                     FNKVFGYFIEITRANLQNFEPSEFGYMRKQTLSNAERFITDELKEKEDIILGAEDKAI
                     ELEYQLFVQLREEVKKYTERLQQQAKIISELDCLQSFAEIAQKYNYTRPSFSENKTLE
                     LVESRHPVVERVMDYNDYVPNNCRLDNETFIYLITGPNMSGKSTYMRQVAIISIMAQM
                     GAYVPCKEAVLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALTYATEDSLIIFDE
                     IGRGTSTYDGLALAQVMIEYVAETSHAKTLFSTHYHELTTLDQALPSLKNVHVAANEY
                     KGELIFLHKVKDGAVDDSYGIQVAKLADLPEKVISRAQVILSEFEASAGKKSSISNLK
                     MVENEPEINQENLNLSVEETTDTLSQKDFEQASFDLFENDQESEIELQIKNLNLSNMT
                     PIEALVKLSELQNQLK"
     gene            14468..>15254
                     /gene="mutL"
                     /locus_tag="PF788_001617"
     CDS             14468..>15254
                     /gene="mutL"
                     /locus_tag="PF788_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDG6303878.1"
                     /translation="MGKIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEIS
                     IEVEESGVQSIRVVDNGSGIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALAS
                     ISSVAKVTLKTCTDNANGNEIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYI
                     KSLYTELGKITDIVNRMAMSHPDIRIALISDGKTMLSTNGSGRTNEVMAEIYGMKVAR
                     DLVHISGDTSDYHIEGFVAKPEHSRSNKHYISIFINGRYIKNFM"
BASE COUNT         5699 a         2078 c         2900 g         4577 t
ORIGIN      
        1 tgatgtgaat ttttaaatga aatacatgaa aaaatgaatt aaacgataca agggggatat
       61 aaatgtcaat tgccattatt gctgtaggct cagaactatt gctaggtcaa atcgctaata
      121 ccaacggaca atttctatct aaagtattta atgaaattgg acaaaatgta ttagaacata
      181 aagttattgg agataataaa aaacgtttag aatcaagtgt acgtcatgcg ctagaaaaat
      241 atgatactgt tattttaaca ggtggcttag gtcctacgaa agatgactta acgaagcata
      301 cagtggccca gattgttggt aaagatttag ttattgatga gccttcttta aaatatattg
      361 aaagctattt tgaggaacaa ggacaagaaa tgacacctaa taataaacaa caggctttag
      421 taattgaagg ttcaactgta ttaacaaatc atcatggcat ggctccagga atgatggtga
      481 attttgaaaa caaacaaatt attttattac caggtccacc gaaagaaatg caaccaatgg
      541 tgaaaaatga attgttgtca cattttataa accataatcg aattatacat tctgaactat
      601 taagatttgc gggaataggt gaatctaaag tagaaacaat attaatagat cttatcgata
      661 aacagactaa tcctacgatt gcgcctttgg cgggaagtca tgaagtatat attagattga
      721 ctgcaaatgc cgactcaaaa gaacaagcac aatcattgat tcaacctgtt aaacaagaaa
      781 ttcttgatcg tattggagaa tattattatg gttcagatga cacattaatt gagcaagctg
      841 taataaagaa aattcatgaa ccttttgtaa tatatgatgg tattactaat ggtgctttat
      901 atcatcgatt gaaagaagtg gatttaaacg atgttctaaa gggtatgatt aatcacaatg
      961 aaaactttgt tgatattaat aaacctattg agcagcaatt aaaagatgca gtgcaatttg
     1021 ttaataaatt gtttaatgtg tcatcagcaa ttattctatt agagtatgat ggtgtagttc
     1081 atataggcta tgataataac tttgaattta aaactgagca atttaaaatg tctaaatcta
     1141 gaaatttatt aaagaacaga agtcaaaatt atgcgctcat aagattatta aattggctta
     1201 gaacaacaaa ttaattgtat tatcgataaa aatataagca cgtttgttcg tttttgcgtt
     1261 ttgatttcaa gattttatac gaacaaatat tcgcaaaaca cttgtatttt attttgaatc
     1321 cttgtatagt attggtaaga taattaaaag atagcaattt caattaggag gtctcgcttt
     1381 ggataacgat cgtcaaaaag ctttagatac agtaattaaa aatatggaga aatctttcgg
     1441 taaaggtgcc gtaatgaagt tgggtgacaa tataggtcgc cgagtttcaa ctacatcaac
     1501 tggttcagtt acattagata atgcgctagg tgtaggtggc tatcctaaag gacgaattat
     1561 tgaaatttat ggtcctgaaa gttctggtaa gacaacagta gcgcttcacg ctattgctga
     1621 agtacaaagt aatggcgggg tggcagcatt tatcgatgct gaacatgctt tagatccaga
     1681 atatgctcaa gcattaggcg tagatatcga taatttatat ttatcgcaac cggatcatgg
     1741 tgaacaaggt cttgaaatcg ccgaagcatt tgttagaagt ggtgcagttg atattgtagt
     1801 tgtagactca gttgctgctt taacacctaa agctgaaatt gaaggagaaa tgggagacac
     1861 tcacgttggt ttacaagctc gtttaatgtc acaagcgtta cgtaaacttt caggtgctat
     1921 ttctaaatca aatacaactg ctattttcat caaccaaatt cgtgaaaaag ttggtgttat
     1981 gttcggtaat ccagagacta caccaggtgg acgtgcatta aaattctata gttcagtaag
     2041 actagaagta cgtcgtgcag aacagcttaa acaaggacaa gaaattgtag gtaatagaac
     2101 taaaattaaa gtcgttaaaa ataaagtggc accaccattt agagtagctg aagttgatat
     2161 tatgtatgga caaggtattt ctaaagaggg tgaacttatt gatttaggtg ttgaaaacga
     2221 catcgttgat aaatcaggag catggtattc ttacaatggc gaacgaatgg gtcaaggtaa
     2281 ggaaaatgtt aaaatgtact tgaaagaaaa tccacaaatt aaagaagaaa ttgatcgtaa
     2341 attgagagaa aaattaggta tatctgatgg tgatgttgaa gaaacagaag atgcaccaaa
     2401 gtcattattt gacgaagaat agtacacaaa tttatatcta tagttaaact tagcaaatat
     2461 ccttatagga ttgattgaaa gtgatattca tctcataaag ctagaataat atctaacttt
     2521 atgggataca ctacaaatcg agactataag gttttttatt ttatttatta ttacattatc
     2581 aatagtttta taatcgagct tcaaaacttt agaaaatagt agaaatagca ttcaatatag
     2641 tgcaaaagtg caaattgata acttgacact tatctcctat aaaccgtaca attaatttgt
     2701 atgatttata tataatttca taaagtcata ttgaatttca tataaagagc aaaccctaga
     2761 aaaggaggtg tttgtgtgaa tttattaagc ctcctactca ttttgctggg gatcattcta
     2821 ggagttgttg gagggtatgt tgttgcccga aatttgttgc ttcaaaagca atcacaagct
     2881 agacaaactg ccgaagatat tgtaaatcaa gcacataaag aagctgacaa tatcaaaaaa
     2941 gagaaattac ttgaggcaaa agaagaaaac caaatcctaa gagaacaaac tgaagcagaa
     3001 ctacgagaaa gacgtagcga acttcaaaga caagaaaccc gacttcttca aaaagaagaa
     3061 aacttagagc gcaaatctga tctattagat aaaaaagatg agattttaga gcaaaaagaa
     3121 tcaaaaattg aagaaaaaca acaacaagta gatgcaaaag agagtagtgt tcaaacgtta
     3181 ataatgaagc atgaacaaga attagaacgc atctccggtc tcactcaaga agaagctatt
     3241 aatgagcaac ttcaaagagt agaggaagaa ctgtcacaag atattgcagt acttgttaaa
     3301 gaaaaagaaa aagaagctaa agaaaaagtt gataaaacag caaaagaatt attagctaca
     3361 gcagtacaaa gattagcagc agatcacaca agtgaatcaa cggtatcagt agttaactta
     3421 cctaatgatg agatgaaagg tcgaatcatt ggacgagaag gacgaaacat ccgcacactt
     3481 gaaactttaa ctggcattga tttaattatt gatgacacac cagaagcggt tatattatct
     3541 ggttttgatc caataagaag agaaattgct agaacagcac ttgttaactt agtatctgat
     3601 ggacgtattc atccaggtag aattgaagat atggtcgaaa aagctagaaa agaagtagac
     3661 gatattatta gagaagcagg tgaacaagct acatttgaag tgaacgcaca taatatgcat
     3721 cctgacttag taaaaattgt agggcgttta aactatcgta cgagttacgg tcaaaatgta
     3781 cttaaacatt caattgaagt tgcgcatctt gctagtatgt tagctgctga gctaggcgaa
     3841 gatgagacat tagcgaaacg agctggactt ttacatgatg ttggtaaagc aattgatcat
     3901 gaagtagaag gtagtcatgt tgaaatcggt gtagaattag cgaaaaaata tggtgaaaat
     3961 gaaacagtta ttaatgcaat ccattctcat catggtgatg ttgaacctac atctattata
     4021 tctatccttg ttgctgctgc agatgcattg tctgcggctc gtccaggtgc aagaaaagaa
     4081 acattagaga attatattcg tcgattagaa cgtttagaaa cgttatcaga aagttatgat
     4141 ggtgtagaaa aagcatttgc gattcaggca ggtagagaaa tccgagtgat tgtatctcct
     4201 gaagaaattg atgatttaaa atcttatcga ttggctagag atattaaaaa tcagattgaa
     4261 gatgaattac aatatcctgg tcatatcaag gtgacagttg ttcgagagac tagagcagta
     4321 gaatatgcga aataattttt gtctccctca caaattagtg agggagcttt tttaagttgt
     4381 agtcttaatc tagttagaca gcactttatc ggtaataact atattaaaca gtagttattt
     4441 gaaagtaaga cggaccttat attaaataag aagttattgc ttttaataaa aatgttttag
     4501 gcttcgtaat tactatattt atattatgta aacctataaa gatgattgct tttctatcca
     4561 ataaaaaaga agagaagatg taacacatct tctcttctgc aatattaatt aggatttatt
     4621 tctaagttga gttattttaa ttgtaaatct gttttcttta attcttttat aacttctgca
     4681 gtatcataac aatttgttgc aattgttgaa tatctctctg ctaaacgata tgcattaatg
     4741 taaagcttta aactttcttt agctatatcc tctgcatctt cgaattttga tgggttagac
     4801 ataaccacta attctgcaaa tttttctgga tcaatattaa tagacatgta tttatttaca
     4861 actcctattt attttgatgt cttaatacta acatattgaa gttttcagac aaagtaatgt
     4921 ctctctataa ttgaagaaaa ataattcaaa gaatttaata tttactttaa atattagaac
     4981 gtatgaatta aactagtatt tatgagagga tgaacaaaac atgagaataa tgtttatagg
     5041 ggatatcgta ggtaaaattg gacgagacgc aattgaaacg tacatacctc aactgaagca
     5101 aaagtataaa ccaacagtta caattgtaaa tgctgaaaat gcagcacatg gtaaaggttt
     5161 gactgaaaaa atatataaac aattactaag aaatggtgta gatttcatga ctatgggtaa
     5221 tcacacatat ggtcaacgtg aaatttatga ttttatagat gaagcaaaac gactagtaag
     5281 accagcgaat tttccggatg aagcgccggg aattggtatg agatttatac aaattaatga
     5341 tattaaactt gcagttatta atctgcaagg aagagcgttt atgccagata ttgatgatcc
     5401 ttttaaaaag gcagatcaat tagtcaagga agcacaagaa caaactccgt ttatatttgt
     5461 tgattttcat gcagaaacaa cttctgaaaa gtatgcaatg ggatggcatt tagatggtag
     5521 agctagcgct gttgttggaa cgcatacaca cattcaaaca gcagatgaac gtattttacc
     5581 aaaggggaca gggtatataa cggatgttgg tatgacaggt ttttatgatg gcattttagg
     5641 aataaataaa acagaggtaa ttgagcgttt tatcactagt ttgccacaaa gacatgttgt
     5701 tccaaatgaa ggtagaagtg tattatctgg tgttgttatt gatttagaca aagaaggtaa
     5761 aacaaagcac atcgaacgta tattgataaa tgatgaccat ccattttcaa cattttaaaa
     5821 ttacgtaagt aaacattcga attggaccct atcgtccatt agtatgaatt taatatagta
     5881 ccactgttta catagtaaat cggtggttct ttttgttatc atttaatatg aaatatatcc
     5941 ataggaggca tataactatg aaaccacaat tatcgtggaa agttggcggt caacaaggcg
     6001 aaggtattga atcaactggg gaaatcttcg ctacggctat gaatagaaaa ggatattatt
     6061 tatatggata tagacatttt tcaagtcgta tcaaaggtgg acatacgaat aataaaatta
     6121 gagtttctac gacgcctgtt catgcaatta gtgatgattt agatattttg attgcatttg
     6181 accaagaaac aattgatgtt aaccatcatg aaatgagaga agacagtatt attttagctg
     6241 atgccaaggc taaacctgtg aaaccagaag gatgtcatgc acagcttatt gaattacctt
     6301 ttacagcaac cgctaaagaa ttaggtacag cattaatgaa aaacatggtt gcaataggtg
     6361 ctactagcgc attgatgaat ttgaatacaa atacatttga agaacttatt actaatatgt
     6421 tttctaaaaa aggtgacaag gtagttgaag tcaatatcca agcattaaac gaaggttatc
     6481 aattaatgca atctcgctta cctgaaatct acggggactt tgaattagag tcaacagatg
     6541 cactaccaca tctatatatg attggtaacg atgccattgg attaggtgca attgctgcag
     6601 gttcacaatt tatggcggca tatcctatta cacctgcgtc tgaagttatg gaatatatga
     6661 ttgccaatat atctaaagta aacggagcgg ttattcaaac agaagatgaa attgctgctg
     6721 taactatggc tattggtgca aattatggtg gagtcagagc gtttacggct agtgctggtc
     6781 caggtttatc tttaatgatg gaagcaattg gattatctgg tatgactgaa acgccattag
     6841 tcattattaa tacccaacga ggtggacctt ctactggatt acctacgaaa caagaacagt
     6901 cagatttaat gcaaatgatt tatggtacac atggtgatat tccaaaaatt gttgtagcac
     6961 caacagatgc agaagatgca ttttatttaa ctatggaagc atttaattta gcagaacaat
     7021 atcaatgccc tgttatagtt ctaagtgatt tgcaattatc tttaggtaaa caaactgttg
     7081 aaaaattaga ttataatcgt attgaaatta aacgtggtga aatcattcaa tctgatattg
     7141 aacgtgaaga agatgataaa ggttatttca agcgttatgc gttaacatcc gatggtgttt
     7201 ctcctagacc tatccccggt gttaaaggag gtattcatca tataactggt gtggaacaca
     7261 atgaagaagg taaacctagt gaatctgcgt caaatagaca acaacaaatg gaaaaacgaa
     7321 tgcgtaaaat tgagcagtta ctaattgaat cgccagtaga agctaactta caacatgagg
     7381 atgcagatat tctttatatc ggttttattt ctacaaaagg tgcaattcaa gaaggtagta
     7441 accgtttgaa tcaacaaggc ataaaagtta acactataca aattagacaa ttgcatccat
     7501 tcccaacaag cgttattcaa gatgcagtta ataaagcgaa gaaagtcgtt gtagtggagc
     7561 acaattatca aggacaattg gctagtatta taaaaatgaa tgtcaatatt catgataaga
     7621 ttgaaaatta tacaaagtat gatgggacac ctttcctacc acatgaaatc gaagaaaaag
     7681 gcaaaataat tgctactgaa ataaaggaga tggtatagat ggcgacattt aaagatttta
     7741 gaaataatgt taagcctaac tggtgccccg gatgtggcga tttctcagta caagctgcaa
     7801 ttcaaaaagc agccgcaaat atagggttag aacctgaaga agtagctatc atcaccggta
     7861 taggatgttc tggccgtctt tcaggatata ttaattctta tggcgttcat tctattcacg
     7921 gacgtgcatt acctttagct caaggtgtaa aaatggcgaa taaagattta actgttattg
     7981 catcgggagg agatggtgat ggttatgcta taggtatggg gcatacaatc catgctttaa
     8041 gaagaaatat gaacatgacg tatatagtca tggataatca aatttatggt ttgacaaagg
     8101 gacaaacatc gccgtcatca gcagtaggat ttgttactaa aacaacgcca aaaggtaata
     8161 tagaaaaaaa tgttgcgcct ttagaattag cattatcatc tggtgccaca tttgtagccc
     8221 aaggtttttc aagcgatatt aaaggattaa caaaactaat tgaagatgca attaatcatg
     8281 atggattttc attcgttaat gtcttttcac catgtgtgac ttataataaa attaacacat
     8341 acgattggtt taaagaacat ttaacaagtg ttgatgacat tgaaaattat gattctacag
     8401 ataaacaatt agcgactaaa actgttattg aacatgaatc tttagtaact ggtattgttt
     8461 atcaagataa agaaacacca tcatatgaat ctcaaattaa agagttagat gatacaccac
     8521 ttgctaaaag agatatcaaa attactgaag acaccttcaa tgcattaact gaacaattta
     8581 tttaataatt aaaactgagt cgtataaatg tatttataac agatccattt atgctactca
     8641 gttttttact attacaaaaa ataaaggagt ttttaaaaat gaaagacaca ttaatgagta
     8701 tacaaataat tcctaaaaca ccaaacaatg acaatgttat accttacgta gacgaggcga
     8761 ttaaaataat tgacgaatct ggtttgcatt ttagagtagg tccgttagaa acgacagtac
     8821 aaggaaatat gaatgaatgt ttaattttaa tacaatcatt aaatgaacga atggtggaac
     8881 ttgaatgtcc aagtattatt agccaagtta agttttatca tgtgccagat ggcatcacta
     8941 ttgaaacttt aactgaaaaa tatgatgaat aacattaaaa gtgaagtaaa ctggatttga
     9001 attggcttgt tagagatgac gtataacttt aactgttttt gcactttata gttaaattta
     9061 atataattat taaatgatac gggcaaatag aaaggatttt gtaaagtgaa cgaagaacaa
     9121 agaaaagcaa gttctgtaga tgttttagct gagagagata agaaagcaga aaaagattat
     9181 agtaaatatt ttgaacatgt ttatcagccg cctaatttaa aagaagcgaa aaaaagaggt
     9241 aaacaagaag ttcgttataa tagagatttc caaattgatg aaaaatatcg cggtatgggg
     9301 aacgagcgta catttttaat taaaacatat ggatgtcaaa tgaatgcaca tgacactgag
     9361 gtcattgctg gtatacttga agcattaggc tatcaagcaa cgactgatat taacactgca
     9421 gatgttattt taattaatac atgtgcgatt agagaaaatg ccgagaacaa agtgtttagt
     9481 gaaataggta atttgaagca tttgaaaaaa gaacgacctg atattttaat cggtgtttgt
     9541 ggttgtatgt cacaagaaga gtcagtagtg aataaaattt taaaatcgta tcaaaatgta
     9601 gatatgatat ttggtacaca taatattcat catttaccag aaattttaga agaagcatac
     9661 ttatctaaag caatggttgt tgaagtatgg tctaaagaag gagacgttat tgaaaatctt
     9721 ccaaaagtcc gtgaaggcaa cattaaagca tgggtcaata ttatgtatgg ttgtgataag
     9781 ttttgtacat attgtattgt tccatttaca agaggtaaag aacgaagccg tagacctgaa
     9841 gacattatag atgaagtacg tgaacttgct cgtgaaggtt acaaagaaat aacgctttta
     9901 ggtcaaaatg taaattctta tggtaaagat ttacaggata tagaatatga cttaggagat
     9961 cttttacaag caatttctaa aatagcgatt ccaagagttc gtttcacaac aagtcatcct
    10021 tgggacttta cagatcacat gattgatgtt atttcagagg gtggtaatat cgttccgcat
    10081 atccacttgc cagttcaatc tggaaataat gcagtattaa aaataatggg tagaaaatat
    10141 acacgagaaa gttatttgga tttagtaaaa cgaatcaaag atagaattcc taatgtagca
    10201 ttaactacag atattattgt agggtatcca aatgaatcag aggaacaatt tgaagaaact
    10261 ttaactctgt atgatgaagt tggttttgaa catgcatata cgtacttgta ttcacaacgt
    10321 gatggtacgc ctgctgctaa aatgaaagat aatgtacctt taaatgtcaa aaaggaacga
    10381 ttgcaacgtt tgaataaaaa agttggtcat tattcacaaa tagctatgag taagtacgaa
    10441 ggacaaactg taacagtact ttgtgaagga agtagtaaaa aagatgatca ggttcttgct
    10501 ggctacactg ataaaaataa gctagttaat ttcaaagcgc ctaaagaaat gattggtaaa
    10561 ctagtggaag tacgaataga tgaagctaaa cagtattcat taaatggcag ttttataaag
    10621 gaagtagagc cggaaatggt gattcaataa atgtataata aagatgacgt gttgaaccaa
    10681 gcggataata ttgcaaataa aattaaaaat ttggatacta tcaaaacata tcaacaaatt
    10741 gaagcacaga ttcatcagaa ccaaacgata aagactaaaa tggatatgtt aaaaaagcat
    10801 caaaaacaag cagtaaactt tcaaaattac gggaaacaaa atgcgctaga acagtcggaa
    10861 cataccattc agagtataga agcagaaata aatacattgc ccatagttga acagtttcaa
    10921 acttcacaat atgaagcgaa tcaattattg aaaatgtttg tatcaacaat ggaaacacgt
    10981 ttaaatgacc ataataaagc caagcatagt gattaattac aaacaaaaag gagaacaatc
    11041 atatgaaatc aagaaaactg gctataactg cacttttaat tgcaataaat gttgtattaa
    11101 gcagtattat catcattcct ctaggaccag ttaaggcagc accagtacag cattttgtaa
    11161 atgtattaag tgcggtcata gtaggtcctt ggtatggatt agctcaagcg cttatatcat
    11221 caattttaag agttcttttt ggtactggta cagcttttgc atttccgggt agtatgattg
    11281 gagttttatt ggctagtatg ttttacatat atcgtaaaca tatatttatg gccgcggtcg
    11341 gtgaagtact tggaactggt gtcatcggaa gtttaatttg tataccatta gcatatttcc
    11401 ttgggcttca agacttcttc attaaaccgt taatgattac gttcatagtc tcaagtgcta
    11461 tcggatctat tataagttat ttcttattaa ttactctaaa aaaacgtggt attcttcaaa
    11521 ggtttataaa ataattttat gatatatgat ttcaaacaga gtcattgttc attttaatat
    11581 tgaacgccct tacttaatta aatgtcttga atgttagaat tttaatttaa ttctaaacat
    11641 gctattgaca cattttatta ggtttgaggc gttttcttat acatttaaga tgcttcgtga
    11701 ttatatggta tgaataggtt tgtaaaagta agtatgttaa aatgtataag ttaaataatt
    11761 aataattaaa aagcttacaa acgaatatat tgtaaagaca aattttaaaa agagacaagg
    11821 gttgtgaaga aataatatgt ctaatgttac accaatgatg cagcaatatt taaaaataaa
    11881 atcagaatac caagattgct tattattttt tagactaggt gatttctatg aaatgtttta
    11941 tgaagatgcc aaggaggcat cacgtgtact tgaaattact ttaactaaaa gagatgctaa
    12001 aaaagaaaat ccaattccga tgtgtggtgt tccgtatcat tctgcagata gttatataga
    12061 tacacttgtt aataatggat ataaagtagc tatttgtgaa cagatggaag atccgaaaca
    12121 aacgaaaggt atggttagac gtgaggtagt aagaattgtg actccaggaa ctgtgatgga
    12181 gcaaggtggt gtagatgata aacaaaataa ctatatttta agttttgtta tgaatcaacc
    12241 tgaaattgcg cttagttact gtgatgtttc tactggcgaa ttaaaggtta cacattttaa
    12301 tgatgaagcg actttattaa atgaaattac gacgataaac cctaacgaag ttgttatcaa
    12361 tgacaatatt tccgataatt taaaaagaca aattaatatg gtgacagaaa caataacagt
    12421 cagggaaacg ttatcatcag aaatctatag tgtgaatcaa actgaacata aattaatgta
    12481 tcaagcgaca caattattgc tagattatat tcatcataca caaaaacgtg atttatcgca
    12541 tatcgaggat gttgttcaat atgcagctat agattatatg aaaatggatt tttatgctaa
    12601 gagaaacctt gagttaacgg aaagcattcg attaaaatca aaaaaaggaa cgctactttg
    12661 gctaatggac gaaacgaaaa caccaatggg agcacgccgc ttaaaacaat ggatagatag
    12721 accactaata agtaaagaac aaattgaagc acgattagat atcgttgatg aatttagtgc
    12781 tcatttcata gaaagagaca ccttaagaac atatcttaat caagtgtatg atattgaacg
    12841 tcttgttggg cgtgttagtt acggaaatgt taatgcgaga gatttaattc aacttaaaca
    12901 ttccatttct gaaataccga atattaaagc attactaaat tctatgaatc agaatactct
    12961 tgtacaagtt aatcaactag aaccccttga tgatttactt gatatattag aacagagttt
    13021 agtagaagaa ccaccaattt cagttaaaga tggcggacta ttcaaagttg gttttaatac
    13081 gcaattagat gaatatcttg aagcttcaaa aaacggaaaa acatggttag cagaattaca
    13141 agccaaagaa agacaacgta caggaataaa atcattgaaa ataagcttta ataaagtgtt
    13201 tggttatttt atagaaataa cacgtgccaa cttgcaaaat tttgaaccaa gtgaatttgg
    13261 ttatatgagg aagcaaacgt tatcgaatgc tgaacgtttt ataactgatg aacttaaaga
    13321 aaaagaagat atcattttag gtgcggaaga caaagccatc gaattagaat atcaattatt
    13381 tgttcagcta cgtgaagaag ttaaaaaata tactgaacgt ttacaacaac aagctaaaat
    13441 tatttcagag ctagattgtt tacagagctt tgcagaaatt gctcaaaaat ataattacac
    13501 taggccttca tttagtgaaa ataaaacatt agaattagtg gaatctaggc acccagtagt
    13561 ggaaagagta atggattata atgactatgt gcctaataat tgtcgattag ataatgaaac
    13621 atttatatat ttaattacag gtccgaatat gtctggtaaa tcgacatata tgagacaagt
    13681 tgccataatt agtataatgg cccaaatggg agcttatgtc ccttgtaaag aggcagtgtt
    13741 acctatattt gatcaaatat tcactagaat aggtgcggca gatgatttgg tttcaggtaa
    13801 gagtacgttt atggtagaaa tgctagaagc acaaaaggca ttaacttatg caacagagga
    13861 tagtttgatt attttcgatg aaattggacg tggtacttca acgtatgacg gtttagcttt
    13921 agcgcaggta atgatagagt atgtagctga aacatcacat gctaaaacgt tattttcaac
    13981 acattatcat gaattgacaa cattagatca agcattacca agtctaaaaa atgttcacgt
    14041 cgctgctaat gaatataaag gtgaacttat attcttgcat aaagtcaaag atggtgcagt
    14101 tgacgatagt tatggtattc aagttgcgaa attagctgat ttacctgaaa aagttattag
    14161 cagagcacaa gtgattctaa gcgagtttga agcgtctgct ggtaaaaaat catcgatatc
    14221 aaatttaaaa atggtcgaaa atgaacctga aattaatcaa gaaaatttaa acttaagtgt
    14281 tgaagaaaca actgatactt tatctcaaaa agactttgaa caagcatcat ttgatttgtt
    14341 tgaaaatgat caagaaagcg agattgaact acaaattaaa aatttgaatt tatctaatat
    14401 gacaccaatt gaggcattgg tgaagttaag tgaattacaa aatcaattaa aatagaggtg
    14461 ttgcaaaatg gggaaaatta aagaactcca aacctcatta gcaaataaaa tcgcagcagg
    14521 tgaagtagtt gaaagaccga gttctgttgt gaaagaactg ttggaaaatg ctatagatgc
    14581 aggcgctaca gaaataagca ttgaagtaga ggaatctggc gtccaatcta ttcgcgtagt
    14641 cgataatgga agcggaattg aagcggaaga cttaggatta gtatttcata gacatgcgac
    14701 tagtaaatta gatcaagatg aagatttatt tcatattagg acattaggat tccgtggtga
    14761 agcactagcc agtatttcat cagttgctaa agtaacattg aagacttgca cggataatgc
    14821 taatggaaat gaaatatatg tagaaaatgg tgaaatatta aatcataagc ctgcaaaagc
    14881 gaaaaaagga acagatatac ttgtagaatc attattttat aatacaccag cacgtttaaa
    14941 atatattaaa agtttataca ctgaactagg taaaataaca gatattgtca acagaatggc
    15001 aatgagccat ccggacattc gaatagcact catttcagat ggcaaaacaa tgttaagtac
    15061 aaatggttca ggacgaacta atgaagtgat ggcagagatt tatgggatga aagttgcacg
    15121 agatttagta catatatctg gagatacaag tgattatcac attgaaggtt ttgttgcaaa
    15181 gcctgaacat tctagaagta ataagcacta tatttctatt tttattaatg gacgatacat
    15241 taaaaacttt atgc
//
LOCUS       DAMQWL010000059        14926 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.059, whole genome shotgun sequence.
ACCESSION   DAMQWL010000059 DAMQWL010000000
VERSION     DAMQWL010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 14926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14926
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.059"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            36..869
                     /locus_tag="PF788_001618"
     CDS             36..869
                     /locus_tag="PF788_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HDG6303879.1"
                     /translation="MNKTVKDLILVVLGSFIFAAGVNAFIISGNLGEGGVTGLAIILY
                     YAFHISPAITNFLVNAVLIAIGYKFLSKRSMYLTILVTILISIFLSLTESWQVETGNS
                     IVNAIFGGVSVGLGIGVIILAGGTTAGTTILARIATKYLDVSTPYALLFFDMIVVAIS
                     LTVIPLDKVLVTVISLYIGTKVMEYVIEGLNTKKAMTIISTNPDKLAKAIDEQIGRGL
                     TILNGHGYYTREEKDVLYVVISKTQVSKAKRLIKQIDKDAFLVIHDVRDVYGNGFLAD
                     E"
     gene            1151..1948
                     /locus_tag="PF788_001619"
     CDS             1151..1948
                     /locus_tag="PF788_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6303880.1"
                     /translation="MNRLHGQQVKIGYGDNTIINKLDVEIPDGKVTSIIGPNGCGKST
                     LLKALSRLLAVKEGEVFLDGENIHTQSTKEIAKKIAILPQSPEVADGLTVGELVSYGR
                     FPHQKGFGRLTAEDKKEIDWAMEVTGTDTFRHRSINDLSGGQRQRVWIAMALAQRTDI
                     IFLDEPTTYLDICHQLEILELVQKLNQEQGCTIVMVLHDINQAIRFSDHLIAMKEGDI
                     IATGSTEDVLTQEILEKVFNIDVVLSKDPKTGKPLLVTYDLCRRAYS"
     gene            1984..2988
                     /locus_tag="PF788_001620"
     CDS             1984..2988
                     /locus_tag="PF788_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDG6303881.1"
                     /translation="MTNRENPTPLKFLSYIIGLSMILLITLFISTLIGDAKIQASTII
                     EAIFNYNPSNQQQNIINEIRIPRNIAAVIVGMALAVSGAIIQGVTRNGLADPALIGLN
                     SGASFALALTYAVLPNTSFLILMFAGFLGAILGGAIVLMIGRSRRDGFNPMRIILAGA
                     AVSAMLTALSQGIALAFRLNQTVTFWTAGGVSGTTWSHLKWAIPLIGIALFIILTISK
                     QLTILNLGESLAKGLGQNVTMIRGICLIIAMILAGIAVAIAGQVAFVGLMVPHIARFL
                     IGTDYAKILPLTALLGGILVLVADVIARYLGEAPVGAIISFIGVPYFLYLVKKGGRSI
                     "
     gene            2985..4001
                     /locus_tag="PF788_001621"
     CDS             2985..4001
                     /locus_tag="PF788_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDG6303882.1"
                     /translation="MISSNNKRRQLIALAVFSILLFLGCTWSITSGEYNIPVERFFKT
                     LIGQGDAIDKLILLDFRLPRMMITILAGAALSISGAIVQSVTKNPIAEPGILGINAGG
                     GFAIALFIAIGKINADNFVYVLPLISILGGITTALIIFIFSFNKNEGVTPASMVLIGV
                     GLQTALYGGSITIMSKFDDKQSDFIAAWFAGNIWGDEWPFVIAFLPWVLIIIPYLLFK
                     SNTLNIIHTGDNIARGLGVRLSRERLILFFIAVMLSSAAVAVAGSISFIGLMGPHIAK
                     RIVGPRHQLFLPIAILVGACLLVIADTIGKIVLQPGGVPAGIVVAIIGAPYFLYLMYK
                     TKNV"
     gene            4235..5203
                     /gene="dhaK"
                     /locus_tag="PF788_001622"
     CDS             4235..5203
                     /gene="dhaK"
                     /locus_tag="PF788_001622"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDG6303883.1"
                     /translation="MMKKLINKKETFLTDMLEGLLIAHPELDLIANTVIVKKAKKEHG
                     VAIVSGGGSGHEPAHAGFVAEGMLDAAVCGEVFTSPTPDKILEAIKAVDTGDGVLLVV
                     KNYAGDVMNFEMAQELAEMEGINVQTVIVRDDIAVTNEVQRRGVAGTVFVHKLAGYLA
                     EKGYSLTEIKSRVEALLPEIKSIGMAIEPPLVPTTGKYGFDIEDDKMEIGIGIHGEKG
                     IHREEVKDIDHIVGTLLDELYKEVTANDVILMVNGMGGTPLSELNIVTKYIQQNLAAR
                     TVNVAKWFVGDYMTSLDMQGFSITIVPNKPEYLEAFLAPTTSQYFK"
     gene            5245..5829
                     /gene="dhaL"
                     /locus_tag="PF788_001623"
     CDS             5245..5829
                     /gene="dhaL"
                     /locus_tag="PF788_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HDG6303884.1"
                     /translation="MKVNDMKARLLNLEETFKKHESELTELDRAIGDGDHGVNMVRGF
                     SSLKDKLDDSSMQSLFKSTGMALMSNVGGASGPLYGFSFVKMSAVTKDDMDNQDFITL
                     IQAFAEAVESRGKVTLNEKTMYDVVARAAEKLKNGETLTFNDLQQLADNTKDMVATKG
                     RAAYFGEESKGYIDPGAQSMVYILNALIGDEDNA"
     gene            5822..6184
                     /locus_tag="PF788_001624"
     CDS             5822..6184
                     /locus_tag="PF788_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDG6303885.1"
                     /translation="MPKIILVSHSKEIASGTKSLLKQMAGDVDIIPIGGLPDGSIGTS
                     FDIIQEVLTKLEDDALCFYDIGSSEMNVDMAIEMYDGNHRVLKVDAPIVEGSFIAAVK
                     LSIGGSIDDALAEIKQSF"
     gene            6300..6797
                     /locus_tag="PF788_001625"
     CDS             6300..6797
                     /locus_tag="PF788_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303886.1"
                     /translation="MQHLIKKHVLNGEFDLVRQLMSETDFMEFEEAYISSAHEVESMM
                     FYTCILDMIKYEESSEMHDLAFLLLVYPLSEYEGALDSAYYHADASIKLTDGKEVKSL
                     LQMLLLHAIPTPVISDKKAFDIAKQILKLDPNNNVARNVLKDTAKRMDNVVVDINELH
                     QRNAR"
     gene            7253..8320
                     /locus_tag="PF788_001626"
     CDS             7253..8320
                     /locus_tag="PF788_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303887.1"
                     /translation="MMMNKEATKIGFAYVGIVVGAGFSTGQEVMQFFTKYGLWAYLGV
                     IISGFILAFIGRQVAKIGTAFEATNHESTLQYVFGEKFSKVFDYILIFFLFGIAVTMI
                     AGAGATFEESYNIPTWLGALIMTLAIYITLLLDFNKIVRALGIVTPFLIVLVVLIAGV
                     YLFKGHVSLAEVNQVVPEASIWKGIWFGTIYGGLAFSVGFSTIVAIGGDTEKRTVSGA
                     GAMYGGIIYTVLLALINFALQSEYPTIKNASIPTLTLANNIHPLIATVLSVIMLAVMY
                     NTILGLMYSFAARFTEPYSKNYHIFIIIMMVAGYLLSFVGFAELINKLYTIMGYVGLF
                     IVVAVIIKYFKRKNADKKHIA"
     gene            8471..9514
                     /locus_tag="PF788_001627"
     CDS             8471..9514
                     /locus_tag="PF788_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6303888.1"
                     /translation="MNKDNKWTMITALFITVISVLLAFHLKQHYDQITNENHANKDKI
                     NIKNKNVRIYQNLTYNRVFPNSKLDIITPVDMSSNAKLPVIFWMHGGGYIAGDKQYKN
                     PLLAKIAEQGYIVVNVNYALAPQYKYPTPLIQMNQATQFIKENKMNLPIDFNQVIIGG
                     DSAGAQLASQFTAIQTNDRLREAMKFDQSFKPSQIKGAILFGGFYNMQTVRETEFPRI
                     QLFMKSYTGEEDWEKSFKNISQMSTVKQSTKNYPPTFLSVGDSDPFESQNIEFSKKLQ
                     ELNVPVDTLFYDGTHHLHHQYQFHLNKPESIDNIKKVLLFLSRNTSSSGIQTEEKPQI
                     ENPSNELPLNPLN"
     gene            9843..10271
                     /locus_tag="PF788_001628"
     CDS             9843..10271
                     /locus_tag="PF788_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303889.1"
                     /translation="MTRSALKPFKNKRVMVTGRIQRVLFKNYLDRHSTFKPNVRILLK
                     DVFVSGVSIDHLWLYETNKYYALAMELIHQRVKFSANVVPYYKINRNNNLFVQDYGIK
                     RKGRLITEEAYNQNNQYQDKIYEKLPDIDFRLEDFYSKEN"
     gene            complement(10480..10986)
                     /locus_tag="PF788_001629"
     CDS             complement(10480..10986)
                     /locus_tag="PF788_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6303890.1"
                     /translation="MAHIIRRVSIKDVENFISMLANIYDESPYMFYTPGEYDPSVTSA
                     SKQLEEYITSPHKVIFVAESDEQLVGFAFVNTTPFQRIKHVAKIDLGVKKLYQHRGIG
                     QALLDAIMAWCLNNQIHRIEANVPLNNQPALELFKSADFQIEGVLKDKLFIDGKYYDD
                     YMMAKILN"
     gene            11099..12022
                     /gene="graX"
                     /locus_tag="PF788_001630"
                     /gene_synonym="apsX"
     CDS             11099..12022
                     /gene="graX"
                     /locus_tag="PF788_001630"
                     /gene_synonym="apsX"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="auxiliary protein GraX/ApsX"
                     /protein_id="HDG6303891.1"
                     /translation="MKPKVLLAGGTGYIGKYLSEVIENDAELFAISKYPDNKKTDDVE
                     MTWIQCDIFHYEQVVAAMNQIDIAVFFIDPTKNSAKITQSSARDLTLIAADNFGRAAA
                     INQVKKVIYIPGSRYDNETIERLGAYGTPVETTNLVFKRSLVNVELQVSKYDDVRSTM
                     KVVLPKGWTLKNVVNHFIAWMGYTKGTFVKTEKSHDQFKIYIKNKVRPLAVFKIEETA
                     DGIITLILLSGSLVKKYTVNQGKLEFRLIKESAVVYIHLYDYIPRLFWPIYYFIQAPM
                     QKMMIHGFEVDCRIKDFQSRLKSGENMKYTK"
     gene            12038..12712
                     /gene="graR"
                     /locus_tag="PF788_001631"
                     /gene_synonym="apsR"
     CDS             12038..12712
                     /gene="graR"
                     /locus_tag="PF788_001631"
                     /gene_synonym="apsR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor
                     GraR/ApsR"
                     /protein_id="HDG6303892.1"
                     /translation="MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFN
                     PEIVILDVQLPKYDGFYWCRKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPF
                     YTNVLIAKLQAIYRRVYEFTAEEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIIL
                     EILITKKNQIVSRDTIITALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGK
                     GYMAHE"
     gene            12705..13745
                     /gene="graS"
                     /locus_tag="PF788_001632"
                     /gene_synonym="apsS"
     CDS             12705..13745
                     /gene="graS"
                     /locus_tag="PF788_001632"
                     /gene_synonym="apsS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase GraS/ApsS"
                     /protein_id="HDG6303893.1"
                     /translation="MNNLKWVAYFLKSRMNWIFWILFLNFLMLGISLIDYDFPIDSLF
                     YIVSLNLSLTMIFLLLTYFKEVKLYKHFDKDKEIEEIKHKDLAETPFQRHTVDYLYRQ
                     ISAHKEKVVEQQLQLNMHEQTITEFVHDIKTPVTAMKLLIDQEKNQERKQALLYEWSR
                     INSMLDTQLYITRLESQRKDMYFDYVSLKRMVIDEIQLTRHISQVKGIGFDVDFKVDD
                     YVYTDIKWCRMIIRQILSNALKYSENFNIEIGTELNDQHVSLYIKDYGRGISKKDMPR
                     IFERGFTSTANRNETTSSGMGLYLVNSVKDQLGIHLQVTSTVGKGTTVRLIFPLQNEI
                     VERMSEVTNLSF"
     gene            13889..14650
                     /gene="vraF"
                     /locus_tag="PF788_001633"
     CDS             13889..14650
                     /gene="vraF"
                     /locus_tag="PF788_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein VraF"
                     /protein_id="HDG6303894.1"
                     /translation="MAILEVKQLTKIYGTKKMAQEVLRDINMSIEEGEFIAIMGPSGS
                     GKTTLLNVLSSIDYISQGSITLKGKKLEKLSNKELSDIRKHDIGFIFQEYNLLHTLTV
                     KENIMLPLTVQKLDKEHMLNRYEKVAEALNILDISDKYPSELSGGQRQRTSAARAFIT
                     LPSIIFADEPTGALDSKSTQDLLKRLTRMNEAFKSTIIMVTHDPVAASYANRVVMLKD
                     GQIFTELYQGDDDKHTFFKEIIRVQSVLGGVNYDL"
     gene            14640..>14926
                     /locus_tag="PF788_001634"
     CDS             14640..>14926
                     /locus_tag="PF788_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6303895.1"
                     /translation="MTFNEIIFKNFRQNLSHYAIYLFSLITSVVLYFSFVALKYAHKL
                     NMTESYPIIKEGSQVGSYFLFFIIIAFLLYANVLFIKRRSYELALYQTLGLS"
BASE COUNT         5239 a         2012 c         2783 g         4892 t
ORIGIN      
        1 ttatagtcta ataaatatat aaaggggatg gtttcgtgaa taaaacggtt aaagatttaa
       61 tactagttgt cttaggttca tttatctttg ctgcaggtgt aaatgcattt attatttctg
      121 gtaacttagg tgaaggcggg gttacaggtt tagcaattat tttatattat gcgtttcata
      181 tttcaccagc catcactaac ttcttggtca acgcagtatt gattgccata ggttataaat
      241 ttttgagtaa gagaagtatg tacttaacta ttcttgtaac aattcttatt tcaatatttt
      301 tgagtttaac agaatcatgg caagtagaaa ctggaaacag cattgtgaat gccatttttg
      361 gtggtgtaag cgttggacta ggaatcggag taattatcct tgcaggcggt acaacagcag
      421 gtacaacaat tttggcgaga attgcaacga aatacctcga tgtaagcacg ccatatgctt
      481 tgcttttctt cgatatgatc gttgttgcaa tttcacttac agttattcca cttgataaag
      541 tattagtaac agtaatatca ctttatatag gaacaaaagt gatggaatat gtcatagaag
      601 gtttaaacac taaaaaagct atgacgatta tttcaactaa tcccgacaaa cttgccaaag
      661 caatagacga gcaaattgga agaggtttaa ccattttaaa cggacatggc tattatacgc
      721 gtgaagaaaa agatgtctta tacgttgtta tttctaaaac acaagtttca aaagcaaagc
      781 gattaattaa acaaatcgat aaagatgcat tcctcgtaat tcatgatgta agagatgtct
      841 atggtaatgg ctttcttgca gatgaataaa taaatggtat gagcacacat acttaaatag
      901 aagtccacgg acaagttttt gaactatgaa gacttatctg tgggcgtttt ttattttata
      961 aaagtaatat acaagacatg acaaatcgag ctatccaatt taaaaagtaa tgttagtcaa
     1021 taagattgaa aaatgttata atgatgttca tgataatcat tatcaattgg gatgtctttg
     1081 aaaattgata atttaaaaat agaaattatt ttttataaac agaaagaatt ttattgaaag
     1141 tagggaaatt atgaatcgtt tgcatggaca acaagttaaa attggttacg gggataacac
     1201 gattataaat aaattagatg ttgaaatacc agatggcaaa gtgacgtcaa tcattggtcc
     1261 taacggctgc gggaaatcta ctttgctaaa ggcattgtca cgtttattgg cagttaaaga
     1321 aggcgaagta tttttagatg gtgaaaatat tcatacacaa tctacgaaag agattgcaaa
     1381 aaaaatagcc attttacctc aatcacctga agtagcagat ggcttaactg ttggggaatt
     1441 agtttcatat ggtcgttttc cacatcaaaa aggatttggt agattaactg ctgaggataa
     1501 gaaagaaatt gattgggcaa tggaagttac aggaactgat acattccgac accgttcaat
     1561 caatgattta agtggtggtc aaagacaacg tgtttggatt gcaatggcat tagcacaaag
     1621 aactgatatt atctttttag acgaaccaac aacatattta gatatctgtc atcaattaga
     1681 aatactagaa ttagttcaga agctaaatca ggaacaaggt tgtacaattg tcatggttct
     1741 tcatgatatc aaccaagcga ttcgtttctc agatcatctt attgcgatga aagaagggga
     1801 tatcatcgct acaggttcaa cagaagacgt attaacacag gaaatattag aaaaagtttt
     1861 taatattgat gttgttttaa gtaaagatcc taaaactgga aaacctttac tggtaactta
     1921 tgacttatgt cgcagagctt attcttaatt aagtaagtta atatgataaa aaggacaatt
     1981 aacatgacaa atagagagaa cccaacgcca ttgaagtttt tatcctatat tataggttta
     2041 agtatgatac tactaatcac actatttatt tctacattaa taggtgacgc caaaattcaa
     2101 gcctctacaa ttatagaggc tatttttaat tataatccta gcaatcaaca gcaaaacatc
     2161 atcaatgaga ttaggattcc cagaaatata gcagcagtaa ttgtaggtat ggcgcttgca
     2221 gtttctggtg cgattataca aggtgttact cgtaatggtc ttgctgatcc ggcgctcata
     2281 ggtttaaatt caggtgcttc atttgcttta gcattaacat atgcagtttt accaaacact
     2341 tcatttttaa tattgatgtt tgctggattt ttaggtgcta ttctaggagg tgctattgta
     2401 ttaatgatag gccgatctag acgtgatgga tttaatccga tgcgtattat tttagcgggt
     2461 gcagcagtaa gtgctatgtt aacagcgcta agtcaaggta ttgcattagc ttttagacta
     2521 aatcaaacag taacattttg gactgctgga ggcgtttcag gcacaacatg gtcacacctt
     2581 aagtgggcaa ttccattaat tggtattgcg ttattcatta tattaacaat tagtaaacaa
     2641 cttaccattt taaatcttgg tgaatcatta gctaaaggtt taggtcaaaa tgtaacaatg
     2701 atcagaggca tatgtttaat tattgctatg attctagcag gtattgcagt tgctatcgct
     2761 ggacaagttg catttgtagg tttgatggta cctcatatag caagattttt aattggaact
     2821 gattatgcta aaattctacc attaacagcc ttgttaggtg ggatactcgt gcttgttgcc
     2881 gatgtgatag cacgatattt aggagaagcg cctgttggtg caatcatttc atttatcggt
     2941 gttccttact ttttatattt agttaaaaaa ggaggacgct caatatgatt agttcaaata
     3001 ataaacgcag acaattgata gcactggctg tttttagcat tctactattt ctaggttgta
     3061 cttggagtat tacctcaggt gaatacaaca tacctgttga aagatttttc aaaactttaa
     3121 ttggacaagg tgatgccatt gataagttaa tcttattaga tttcaggtta cctcggatga
     3181 tgattactat tttggctggc gcagcgctta gtattagtgg tgcaatagtg caaagtgtca
     3241 caaaaaatcc aatagctgaa ccaggtatat taggtattaa cgcaggtggc ggatttgcaa
     3301 tcgcattatt tattgcaatt ggtaaaatta atgctgacaa ctttgtttat gtactgccgt
     3361 taataagtat actaggtggt atcaccactg cattgattat ttttattttc agttttaata
     3421 aaaatgaagg tgttacacct gcgagtatgg tattaatagg tgtaggttta caaacagcat
     3481 tatatggtgg ctcaattaca attatgtcaa aatttgatga taagcaatct gatttcatcg
     3541 ctgcttggtt tgcaggtaat atttggggtg acgaatggcc atttgtcatt gcatttttac
     3601 cgtgggtgtt gattattatt ccttacttac tatttaaatc gaatacacta aatattattc
     3661 atacgggtga taatattgca cgaggtctag gtgtaaggtt aagcagagaa cgtttaatat
     3721 tattctttat cgcagtgatg ttatcatctg ctgctgtagc agtagcaggt tcaatttcgt
     3781 ttatcggatt aatgggtccg catattgcca aacgtatcgt tggaccacgt caccagttgt
     3841 ttttaccaat tgccatttta gtaggggcat gtttacttgt tatagctgat acaattggca
     3901 aaattgtatt acaaccaggt ggggttccag caggtattgt cgtagcaatt attggtgcac
     3961 cgtatttctt atatttaatg tacaaaacga aaaatgtata gtgtcaatgg acacaactta
     4021 ttgctatgaa aggcacttta ttataaggct tttcatagca ttttttattt aatgagccac
     4081 tcaagactat ttattttttc aataatgaac cattaagtta tcaagaggat cttatcaaaa
     4141 atatatttga taacggtatc aggttaattc tttatgatag cgcattcatt tattctgttt
     4201 tatactatga ctgataatac caaggaggta caacatgatg aaaaagttaa tcaataaaaa
     4261 agaaacattt ttaactgata tgcttgaagg attgttaatt gcgcacccag agttagatct
     4321 gattgctaat acagttattg taaaaaaagc taagaaagaa catggtgtag caatagtctc
     4381 tggaggtgga agcggacatg aacctgcgca tgccggtttt gttgcagaag gtatgctaga
     4441 tgcagcggtt tgtggcgaag tatttacatc acctacacct gataaaatat tagaagctat
     4501 taaagcagta gatactggtg atggtgtatt actagttgta aaaaactatg caggtgacgt
     4561 gatgaatttc gaaatggcac aagagcttgc agaaatggaa ggtataaatg ttcaaactgt
     4621 tattgttcgt gacgacattg ctgtgacaaa cgaagtacaa cgtcgtggtg ttgcaggaac
     4681 agtgtttgtt cataagcttg ccggttatct tgctgaaaaa ggttattcat taacagagat
     4741 aaaatcgcgt gtagaagcgt tgttacctga aattaaaagt attggtatgg caattgagcc
     4801 accgcttgtt ccaactactg gaaaatatgg ctttgatatt gaagacgaca aaatggaaat
     4861 cggtattggt atacatggtg aaaaaggtat tcatagggaa gaagtaaagg atattgatca
     4921 tattgttgga acattgttag acgaattgta taaagaagtt actgccaatg atgtcatatt
     4981 aatggtaaat ggtatgggtg gtacgccgtt atctgaatta aatatcgtaa ctaaatatat
     5041 tcaacaaaat ttagctgcaa gaacggttaa tgttgctaaa tggtttgttg gtgattatat
     5101 gacatcttta gacatgcaag gtttttctat aactatcgtg cctaataaac cagaatattt
     5161 ggaagcattt ttagcaccaa caacaagtca atactttaaa taagaagtga atatgaataa
     5221 atatacattt atgaggtggc acaaatgaaa gtgaatgata tgaaagcacg tttattaaat
     5281 ttagaagaaa cgtttaaaaa acatgaatct gaattaactg aattagatcg agcaattggt
     5341 gatggtgacc acggggttaa catggttcgt gggtttagta gtcttaaaga caaacttgat
     5401 gatagctcaa tgcaatcatt gttcaaatca actggtatgg cattgatgtc aaatgttggg
     5461 ggtgcatcag gaccactgta tggctttagc tttgttaaaa tgtctgcagt caccaaagat
     5521 gatatggata atcaagattt cattacacta attcaggcat ttgccgaagc ggttgaatca
     5581 cgtggtaaag ttactttaaa tgaaaagaca atgtatgatg tagtagcgcg agcagcagag
     5641 aagcttaaaa atggtgaaac tttaacattc aatgatttac agcaattagc agataataca
     5701 aaagatatgg tagcaacgaa aggtagagct gcatattttg gagaagaatc aaaaggttat
     5761 attgatccag gtgctcaaag tatggtttat attttaaacg ctttgattgg agatgaagat
     5821 aatgcctaaa attatacttg ttagccacag taaagaaatt gcaagtggta caaaatcttt
     5881 gttaaagcaa atggcaggtg acgttgatat tataccaatc gggggattac cagatggttc
     5941 aattggaact tcatttgata tcatccaaga agttttgact aaattagagg atgatgcatt
     6001 gtgtttttac gatattggat cttcagaaat gaatgtagat atggcaattg aaatgtatga
     6061 tggtaatcat cgtgtgttaa aagttgatgc accaattgtt gaaggcagtt ttatcgcagc
     6121 agtaaagcta tcaatcggcg gttcaattga tgatgcatta gcagaaatca aacaatcatt
     6181 ttagttaaaa tttactaata atgaaaaatg taaacctttt tcaaatgaaa ctttataaaa
     6241 aatatgatag tatatatgta aatgtttaat aaaatctgga gaaataggag gacattgcca
     6301 tgcaacacct tataaaaaaa catgtattga atggcgagtt tgatttagta cgacaattga
     6361 tgtccgaaac agattttatg gaatttgaag aagcatatat ttcaagtgcg catgaagtag
     6421 aaagtatgat gttttataca tgtattttag atatgattaa gtacgaagaa tcatctgaaa
     6481 tgcatgactt agcattttta ttgcttgtgt atccactaag tgaatatgaa ggtgctttgg
     6541 attctgctta ttatcatgca gacgcttcca taaaacttac tgacggcaaa gaagttaaaa
     6601 gtttgttaca aatgttatta ttgcatgcga taccaacacc tgttatttca gataagaagg
     6661 cttttgatat cgccaagcaa attttaaaat tagatcctaa taataatgtt gctcgtaacg
     6721 tcttaaaaga cactgccaaa cgtatggaca acgttgttgt tgatataaat gaattacacc
     6781 aacgtaatgc acgttaatta catttcaatt atattagctt aataatagtt ttaacatttg
     6841 gttgggttgg gcatatgttc cagccttttt taatacttaa aaactaacga agtatacttg
     6901 tgtgcacaaa tggtttttat acaacatttt ataaatttat acattttaat aaagaacata
     6961 cgatagatgg tttaaacctt gttaactgag aaattttgat atgtattctt cgaaatttaa
     7021 ctaaatatac gaaattcaag aagcacaata attaatcatt tttcctatac aaaagttcgt
     7081 atgactgcat tataaaagca taaatttata atttttttaa atgtcattga acgtgataat
     7141 gtgaatggat tgagcaattt tgaaaaagtg aaaaataacc tatgcggctt gcaattaatt
     7201 ttcagtacgt tataatgcac actgtgcaaa attaaggagg tctattattc acatgatgat
     7261 gaataaagaa gcaacaaaaa ttggatttgc ctacgtcggc attgtagtgg gcgcaggatt
     7321 ttcaactgga caagaagtta tgcaattttt cactaaatat ggcttgtggg cttatttagg
     7381 tgttattata tctggtttta ttttagcttt tattgggcgc caagtagcaa aaattggtac
     7441 tgcctttgaa gcgacaaatc atgaatcaac attacaatac gtattcggtg aaaagtttag
     7501 taaagtcttt gattatattt taatcttctt cttatttggt atagctgtaa ccatgatagc
     7561 tggtgcaggc gcaacatttg aagaaagtta taacatacct acatggctag gtgctttaat
     7621 tatgacatta gcgatttata ttacgttgct attagacttt aataaaatag tacgtgcact
     7681 aggtatcgtt acaccatttt taattgtttt agttgtatta atcgctggcg tttatttatt
     7741 taaaggtcat gtttcattag cagaagttaa ccaagtagtg cctgaagcaa gtatttggaa
     7801 gggaatctgg tttggtacaa tatatggtgg attagctttt tctgtaggtt ttagtaccat
     7861 cgtagcaatc ggtggggata ctgaaaagcg tacagtgtca ggtgcaggcg cgatgtatgg
     7921 tggtattatc tatactgtat tactagcatt gatcaacttt gcattgcaaa gtgaatatcc
     7981 aactattaaa aatgcctcaa ttcctacatt gacgttagca aataatatcc atcctttaat
     8041 agcaacagtg ttatctgtta ttatgctggc ggttatgtat aatactattc taggactaat
     8101 gtattcattt gcagcacgtt ttacagaacc atacagtaaa aattatcata tctttattat
     8161 tataatgatg gtagcaggtt atttattaag tttcgtagga tttgctgaat taattaataa
     8221 gttatataca attatgggat atgtaggctt atttattgta gtagctgtaa ttattaaata
     8281 tttcaaacgt aaaaatgcgg ataaaaaaca tattgcttaa tatcatatga gggatatccg
     8341 aaactttaca attgaatcac tttgttttaa ccttaaaagc aattcgtctc tactcttatc
     8401 gggcgaattg ctttttatat ttattcagtc tattaatatg agcgtctaac aaatagagag
     8461 gtacgatgta atgaataaag ataataaatg gacgatgata actgcgcttt ttataactgt
     8521 aatcagtgta ttgttagcat ttcatctgaa acaacattat gaccaaatta caaatgagaa
     8581 ccatgctaat aaagacaaaa ttaatattaa aaataaaaat gtgcgcattt atcaaaacct
     8641 tacatacaat agagttttcc ctaacagtaa attagatatt attacacctg ttgatatgtc
     8701 ttctaatgcc aaactgccag ttattttttg gatgcacggt ggtggttata ttgcgggtga
     8761 taagcagtat aaaaacccat tattagcgaa aattgctgaa caagggtaca ttgttgtgaa
     8821 tgtaaattat gcattggcgc cacaatataa atatcccaca ccattaattc aaatgaatca
     8881 agcaactcaa ttcattaaag aaaataaaat gaatttacct attgatttta atcaagtaat
     8941 tattggcggt gattctgcag gtgctcaatt agctagccaa tttacggcaa tacagacgaa
     9001 tgatcgctta agagaagcca tgaaatttga tcagtcattc aaaccatcgc aaattaaagg
     9061 tgctatacta tttggtggtt tttataatat gcaaacagtt agagaaactg agtttccaag
     9121 aatacagtta tttatgaaaa gttatactgg cgaagaagat tgggaaaaga gttttaaaaa
     9181 catttcacaa atgtcgacag taaaacaatc gacaaaaaat tatccaccaa catttttatc
     9241 tgttggagat agcgatccat tcgaaagtca aaatatagaa ttcagtaaga aattacaaga
     9301 attgaatgta ccagtagata ctttgtttta tgatggtacg catcatttac atcatcagta
     9361 tcaatttcac cttaataaac ctgaatcgat agataatatc aaaaaagtgt tacttttctt
     9421 aagtcgtaat acatcctcta gtggtattca aactgaagag aaaccacaaa tagaaaatcc
     9481 gagtaatgaa ttaccgttaa atcctttaaa ctaatgataa acagtagtaa tttattgctt
     9541 aagcaacatt taagattttc aaattaaaaa cgaagaattt aaaacatgtg gtgctaatgt
     9601 gtaagagtct gagatataat aaattgttag cggttcttta tcatttctat ctcactctat
     9661 tatgatgtga catttatttt acaaactaat ttgttttgaa cctgaaaata actttttaca
     9721 actaaattgt cgaaaaacag tgtgtacatg atataataaa tttataaatt gaaaagaatt
     9781 caaaagaaaa attaaaatat agattgagca cgaagtgatt tgaaataagg ttgtgaaagg
     9841 gaatgacaag gtcagcatta aaaccattta aaaataaacg cgttatggtt actggacgta
     9901 tacaacgtgt tttgtttaaa aattatttag atagacatag cacatttaag ccgaatgtaa
     9961 ggatattatt aaaagatgta tttgtttcag gtgtatcaat agatcattta tggttatatg
    10021 agacaaataa atactatgca ttggcaatgg aacttattca tcaacgagta aaatttagtg
    10081 cgaatgttgt accgtattac aaaataaata gaaataataa tttattcgta caagattatg
    10141 gaattaagcg taaaggtagg ttaattactg aagaagctta caatcaaaac aatcagtatc
    10201 aggataagat atatgaaaaa ttaccggata tagattttag actcgaagat ttttatagta
    10261 aggaaaacta aacaacatat ataaagcacc actaatcgta gttgatagtt aatcaattac
    10321 acattagtgg tgttttattt tgaatttaaa tttgataaat gaataagagt gtacgtattt
    10381 atttgagatt agataacatt gataagtatg agtaatgtat taggtaacca ttaaattcgt
    10441 tgttatacga ttctgataca agattatgat aaaatagctt taattaagaa ttttagccat
    10501 catatagtca tcataatatt taccatcgat aaataactta tcttttaaaa cgccttcgat
    10561 ttgaaaatcg gcacttttaa aaagctcgag ggcaggttgg ttattgagtg gtacatttgc
    10621 ttcaattcgg tgtatttgat tgtttaaaca ccaagccata atggcatcaa gaagtgcttg
    10681 gccaattcca cgatgttgat ataatttctt tacacctaaa tcaattttag caacatgttt
    10741 aatgcgttga aatggtgtcg tattaacaaa ggcaaagcca acgagttgtt catcactttc
    10801 agcaacgaag atgactttat gcggagaagt gatatattct tctaattgtt tactagccga
    10861 tgtgacgcta ggatcatatt ctcctggtgt gtagaacata tacggagatt cgtcgtatat
    10921 gttcgctaac attgaaatga aattttctac atctttgata ctaactctac gtataatatg
    10981 ggccataaaa agcctccagt attttgaaat tttaaaacat ttgctactat tataatatat
    11041 atgtaactaa aaggtggagt aatatgtttt ttggttacag tttaaaggag tattttagat
    11101 gaaacctaaa gttttattag caggtggaac aggatatatt ggtaagtatt taagtgaagt
    11161 gattgaaaat gatgctgaac tttttgctat atcaaaatat ccagacaata aaaaaacaga
    11221 tgatgttgaa atgacttgga ttcagtgtga tatatttcat tacgaacagg ttgttgcagc
    11281 aatgaatcaa atagatattg ctgtattctt tatcgaccca acaaagaatt ctgccaaaat
    11341 aacacaatca tcagcaagag atttaacatt aatcgcagca gataattttg gtcgagcagc
    11401 ggctatcaat caagtaaaaa aagtaatcta catacctggg agtcgttatg ataatgaaac
    11461 aattgaacgc ctaggtgcat atggtacacc tgtagaaaca acaaatttag tttttaaacg
    11521 ttctttagtt aatgtagaat tacaagtttc aaagtatgat gatgttagat caacgatgaa
    11581 ggtagtttta ccaaagggat ggacattaaa gaacgttgta aaccatttta ttgcatggat
    11641 gggttacact aaaggaactt ttgtgaaaac agaaaaatca catgatcaat ttaagatata
    11701 tattaagaat aaggtgcgac cgctcgcagt atttaaaata gaagaaacag ctgatggaat
    11761 aataacttta attttattga gtggaagttt agtgaaaaaa tatacagtta atcaagggaa
    11821 gttagaattt agattaatca aagagtcggc agtcgtttat atacatctat acgattatat
    11881 ccctcgatta ttttggccga tttattactt tatacaagca ccaatgcaaa aaatgatgat
    11941 tcatggcttt gaagttgact gccggattaa agattttcaa agtcgattaa aatcaggaga
    12001 aaatatgaaa tatactaaat gatattgggt gatatggatg caaatactac tagtagaaga
    12061 tgacaatact ttgtttcaag aattgaaaaa agaattagaa caatgggatt ttaatgttgc
    12121 tggtattgaa gatttcggca aagtaatgga tacatttgaa agttttaatc ctgaaattgt
    12181 tatattggat gttcaattac ctaaatatga tgggttttat tggtgcagaa aaatgagaga
    12241 agtttccaac gtaccaatat tatttttatc atctcgtgat aatccaatgg atcaagtgat
    12301 gagtatggaa cttggcgcag atgattatat gcaaaaaccg ttctatacca atgtattaat
    12361 tgctaaatta caagcgattt atcgtcgtgt ctatgagttt acagctgaag aaaaacgtac
    12421 attgacttgg caagatgctg tcgttgatct atcaaaagat agtatacaaa aaggtgatca
    12481 gacgattttc ctgtccaaaa cagaaatgat tatattagaa attcttatta ccaaaaaaaa
    12541 tcaaatcgtt tcgagagata caattatcac tgcattatgg gatgatgaag catttgttag
    12601 tgataatacg ttaacagtaa atgtgaatcg tttacgaaaa aaattatctg aaattagtat
    12661 ggatagtgca atcgaaacaa aagtaggaaa aggatatatg gctcatgaat aatttgaaat
    12721 gggtagctta ttttttgaaa tctcgcatga actggatatt ttggatattg tttttaaact
    12781 tccttatgtt aggcattagt ctaatcgatt atgattttcc aatagacagt ttattttata
    12841 ttgtttcttt gaatttaagt ttaacaatga tttttctttt attgacatat tttaaagaag
    12901 taaaattata taagcatttt gacaaagata aagaaataga agaaattaaa cataaagatt
    12961 tagcggaaac gccatttcaa cgtcatacag ttgattattt atatcgtcaa atctcagcgc
    13021 acaaagaaaa ggttgttgag caacagttgc aattgaacat gcatgaacaa accattacag
    13081 aatttgtgca cgacataaaa acacctgtga cagctatgaa attattaatt gatcaagaaa
    13141 aaaatcaaga aagaaaacaa gcattactat atgaatggtc tcgtataaac tcgatgctag
    13201 atacacagct gtatattact agattagaat ctcaacgtaa agatatgtat tttgattacg
    13261 tgtcacttaa acgcatggtc attgatgaaa tacaattaac aagacatatt agtcaggtta
    13321 aaggtattgg ttttgatgtt gactttaaag tggatgatta tgtttataca gatataaaat
    13381 ggtgtcgtat gattattaga caaattttgt caaacgcatt gaaatatagt gagaatttta
    13441 atattgaaat tgggacagaa ttaaatgatc aacatgtttc gttatatatt aaagactatg
    13501 gcagaggtat tagtaaaaaa gatatgccgc gaatatttga acgaggattt acgtcaacgg
    13561 ctaacagaaa tgaaacgacg tcttcaggta tgggtctata tttagtaaat agtgtaaagg
    13621 atcaattagg tattcacctg caagtcacgt cgactgttgg taaggggaca actgtcagat
    13681 tgattttccc attacaaaat gaaattgttg aacgcatgtc ggaagtgaca aatttgtcat
    13741 tttaaacatg cgttttgtta cttagaattg atacatcaat gcagcttcaa cgttataata
    13801 agatagatgt tagtcatatg ttaaattgaa gatacaagtg ccaaagccta aaggaaatga
    13861 agttaagata aattatagga gtgttaaagt ggcaatttta gaagtaaaac aattaacaaa
    13921 aatatatgga actaaaaaaa tggcacaaga agtgttgcga gatatcaata tgtctattga
    13981 agaaggcgag tttattgcta ttatgggtcc ctctggatct gggaaaacga cattattaaa
    14041 tgttttaagt tcaattgatt atatttcaca aggttctatt acattaaaag gaaaaaaatt
    14101 agaaaagctt tcaaacaagg aattatctga tatacgcaag catgatattg gttttatttt
    14161 tcaagagtat aatttactgc atacattgac tgttaaagaa aacataatgt taccactaac
    14221 ggtacagaag ttagataaag aacatatgtt aaatcgttat gaaaaagtag cagaagcatt
    14281 aaatatattg gatattagtg ataaatatcc ctctgaattg tctggtggac aaaggcaacg
    14341 aacatcagct gccagagcat ttataacatt gccttctatt atatttgctg acgaaccaac
    14401 aggtgcattg gattctaaaa gtactcaaga tttattaaaa cgattaacaa gaatgaatga
    14461 agcatttaag tctacaatta ttatggtaac gcatgatcct gttgcagcaa gctatgcaaa
    14521 tcgagtagtg atgctaaaag atggtcaaat tttcactgaa ttataccaag gggatgacga
    14581 taaacatacc tttttcaaag aaataatacg tgtacaaagt gttttaggtg gcgttaatta
    14641 tgacctttaa cgagataata tttaaaaatt tccgtcaaaa tttatcacat tatgccatct
    14701 atcttttttc gttaattacg agtgtagtat tgtattttag ctttgtagca ttaaaatacg
    14761 ctcataaact aaacatgaca gagtcatatc caattataaa ggaaggctca caagtcggaa
    14821 gctactttct atttttcatc ataattgcat ttttgttata tgccaatgtg ttatttatta
    14881 aacgacgaag ttatgagctt gcattatatc aaacattagg tttatc
//
LOCUS       DAMQWL010000060        14707 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.060, whole genome shotgun sequence.
ACCESSION   DAMQWL010000060 DAMQWL010000000
VERSION     DAMQWL010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 14707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14707
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.060"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..566)
                     /locus_tag="PF788_001635"
     CDS             complement(<1..566)
                     /locus_tag="PF788_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000028656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit M
                     N-terminal domain-containing protein"
                     /protein_id="HDG6303896.1"
                     /translation="MSITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFY
                     RFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIR
                     EIETQDFDIEHLATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALIS
                     KVMVNLDDLPFVHSDMEIDMLGDAYEFL"
     gene            644..745
                     /locus_tag="PF788_001636"
     CDS             644..745
                     /locus_tag="PF788_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303897.1"
                     /translation="MENFDVGGGNFTFMEIGIGFMTHKPKRLNDDID"
     gene            complement(830..1513)
                     /locus_tag="PF788_001637"
     CDS             complement(830..1513)
                     /locus_tag="PF788_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL10"
                     /protein_id="HDG6303898.1"
                     /translation="MKFTALAKATLALGILTTGTLTTEVHSGHAKQNQKSVNKHDKEA
                     LYRYYTGKTMEMKNISALKHGKNNLRFKFRGIKIQVLLPGNDKSKFQQRSYEGLDVFF
                     VQEKRDKHDIFYTVGGVIQNNKTSGVVSAPILNISKEKGEDAFVKGYPYYIKKEKITL
                     KELDYKLRKHLIEKYGLYKTISKDGRVKISLKDGSFYNLDLRSKLKFKYMGEVIESKQ
                     IKDIEVNLK"
     gene            complement(1879..2577)
                     /locus_tag="PF788_001638"
     CDS             complement(1879..2577)
                     /locus_tag="PF788_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL9"
                     /protein_id="HDG6303899.1"
                     /translation="MKLTTIAKATLALGILTTGVFTAESQTGHAKVELDETQRKYYIN
                     MLHQYYSEESFEPTNISVKSEDYYGSNVLNFKQRNKAFKVFLLGDDKNKYKEKTHGLD
                     VFAVPELIDIKGGIYSVGGITKKNVRSVFGFVSNPSLQVKKVDAKNGFSINELFFIQK
                     EEVSLKELDFKIRKLLIEKYRLYKGTSDKGRIVINMKDEKKHEIDLSEKLSFERMFDV
                     MDSKQIKNIEVNLN"
     gene            complement(2957..3655)
                     /locus_tag="PF788_001639"
     CDS             complement(2957..3655)
                     /locus_tag="PF788_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL8"
                     /protein_id="HDG6303900.1"
                     /translation="MKFTVIAKAIFILGILTTSVMITENQSVNAKGKYEKMNRLYDTN
                     KLHQYYSGPSYELTNVSGQSQGYYDSNVLLFNQQNQKFQVFLLGKDENKYKEKTHGLD
                     VFAVPELVDLDGRIFSVSGVTKKNVKSIFESLRTPNLLVKKIDDKDGFSIDEFFFIQK
                     EEVSLKELDFKIRKLLIKKYKLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADV
                     INSEQIKNIEVNLK"
     gene            complement(3999..4694)
                     /locus_tag="PF788_001640"
     CDS             complement(3999..4694)
                     /locus_tag="PF788_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL7"
                     /protein_id="HDG6303901.1"
                     /translation="MKLKTLAKATLALGLLTTGVITSEGQAVQAKEKQERVQHLYDIK
                     DLHRYYSSESFEFSNISGKVENYNGSNVVRFNQENQNHQLFLLGKDKEKYKEGIEGKD
                     VFVVKELIDPNGRLSTVGGVTKKNNKSSETNTHLFVNKVYGGNLDASIDSFSINKEEV
                     SLKELDFKIRQHLVKNYGLYKGTTKYGKITINLKDGEKQEIDLGDKLQFERMGDVLNS
                     KDINKIEVTLKQI"
     gene            complement(5115..5810)
                     /locus_tag="PF788_001641"
     CDS             complement(5115..5810)
                     /locus_tag="PF788_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL6"
                     /protein_id="HDG6303902.1"
                     /translation="MKLKTLAKATLVLGLLATGVITTESQTVKAAESTQGQHNYKSLK
                     YYYSKPSIELKNLDGLYRQKVTDKGVYVWKDRKDYFVGLLGKDIEKYPQGEHDKQDAF
                     LVIEEETVNGRQYSIGGLSKTNSKEFSKEVDVKVTRKIDESSEKSKDSKFKITKEEIS
                     LKELDFKLRKKLMEEEKLYGAVNNRKGKIVVKMEDDKFYTFELTKKLQPHRMGDTIDG
                     TKIKEINVELEYK"
     gene            complement(6256..6960)
                     /locus_tag="PF788_001642"
     CDS             complement(6256..6960)
                     /locus_tag="PF788_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL5"
                     /protein_id="HDG6303903.1"
                     /translation="MKMTAIAKASLALGILATGTITSLHQTVNASEHKAKYENVTKDI
                     FDLRDYYSGASKELKNVTGYRYSKGGKHYLIFDKNRKFTRVQIFGKDIERFKARKNPG
                     LDIFVVKEAENRNGTVFSYGGVTKKNQDAYYDYINAPRFQIKRDEGDGIATYGRVHYI
                     YKEEISLKELDFKLRQYLIQNFDLYKKFPKDSKIKVIMKDGGYYTFELNKKLQTNRMS
                     DVIDGRNIEKIEANIR"
     gene            complement(7324..8250)
                     /locus_tag="PF788_001643"
     CDS             complement(7324..8250)
                     /locus_tag="PF788_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL4"
                     /protein_id="HDG6303904.1"
                     /translation="MKITTIAKTSLALGLLTTGVITTTTQAANATTPSSTKVEAPQST
                     PPSTKIEAPQSKPNATTPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSD
                     TPQSPTTKQVPTEINPKFKDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIY
                     KIALVGKDDKKYGEGVHRNVDVFVVLEENNYNLEKYSVGGITKSNSKKVDHKAGVRIT
                     KEDNKGTISHDVSEFKITKEQISLKELDFKLRKQLIEKNNLYGNVGSGKIVIKMKNGG
                     KYTFELHKKLQENRMADVIDGTNIDNIEVNIK"
     gene            complement(8359..8496)
                     /locus_tag="PF788_001644"
     CDS             complement(8359..8496)
                     /locus_tag="PF788_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303905.1"
                     /translation="MFVKVAFLCLKSDETSNVPSVESHQNHFYLTNIMDFLIYLTMIQ
                     I"
     gene            complement(8615..9673)
                     /locus_tag="PF788_001645"
     CDS             complement(8615..9673)
                     /locus_tag="PF788_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL3"
                     /protein_id="HDG6303906.1"
                     /translation="MKMRTIAKTSLALGLLTTGAITVTTQSVKAEKIQSTKVDKVPTL
                     KAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEE
                     QKTLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQA
                     QTDMTPKYEDLRAYYTKPSFEFEKQFGFMLKPWTTVRFMNVIPNRFIYKIALVGKDEK
                     KYKDGPYDNIDVFIVLEDNKYQLKKYSVGGITKTNSKKVNHKVELSITKKDNQGMISR
                     DVSEYMITKEEISLKELDFKLRKQLIEKHNLYGNMGSGTIVIKMKNGGKYTFELHKKL
                     QEHRMAGTNIDNIEVNIK"
     gene            complement(9964..10659)
                     /locus_tag="PF788_001646"
     CDS             complement(9964..10659)
                     /locus_tag="PF788_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL2"
                     /protein_id="HDG6303907.1"
                     /translation="MKMKNIAKISLLLGILATGVNTTTEKPVHAEKKPIVISENSKKL
                     KAYYNQPSIEYKNVTGYISFIQPSIKFMNIIDGNSVNNIALIGKDKQHYHTGVHRNLN
                     IFYVNEDKRFEGAKYSIGGITSANDKAVDLIAEARVIKEDHTGEYDYDFFPFKIDKEA
                     MSLKEIDFKLRKYLIDNYGLYGEMSTGKITVKKKYYGKYTFELDKKLQEDRMSDVINV
                     TDIDRIEIKVIKA"
     gene            complement(10945..11625)
                     /locus_tag="PF788_001647"
     CDS             complement(10945..11625)
                     /locus_tag="PF788_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL1"
                     /protein_id="HDG6303908.1"
                     /translation="MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKH
                     YYNKPILERKNVTGFKYTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFI
                     LREGDSRQATNYSIGGVTKSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLK
                     ELDYRLRERAIKQHGLYSNGLKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKI
                     NKILVEMK"
     gene            12097..12942
                     /locus_tag="PF788_001648"
     CDS             12097..12942
                     /locus_tag="PF788_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDG6303909.1"
                     /translation="MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPEDWRG
                     KVPVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHII
                     FIGYYADQHNNPFHMSPYFGYAARLLATSGIDYTYVRMAMYMDPLKPYLPELMNMHKL
                     IYPAGDGRINYITRNDIARGVIAIIKNPDTWGKRYLLSGYSYDMKELAAILSEASGTE
                     IKYEPVSLETFAEMYDEPKGFGALLASMYDAGARGLLDQESNDFQQLVNDQPQTLQSF
                     LQENI"
     gene            12961..13320
                     /locus_tag="PF788_001649"
     CDS             12961..13320
                     /locus_tag="PF788_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HDG6303910.1"
                     /translation="MNIISTILIIFVALEFFYIMYLETIATTSKKTSETFNISVDKLK
                     DKNINLLLKNQGVYNGLIGVLLIYGLFISSNPKEICAAILVYIIGVAIYGGLSSNISI
                     FFKQGTLPVLALISMLW"
     gene            13844..13996
                     /locus_tag="PF788_001650"
     CDS             13844..13996
                     /locus_tag="PF788_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008530238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303911.1"
                     /translation="MVPEEKGSITLSKEAAIIFAIAKFKPFKNRIKNNPQKTNPFLKL
                     HENKKS"
     gene            14257..14529
                     /locus_tag="PF788_001651"
     CDS             14257..14529
                     /locus_tag="PF788_001651"
                     /inference="COORDINATES: protein motif:HMM:NF013677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDG6303912.1"
                     /translation="MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSI
                     KQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI"
BASE COUNT         4481 a         2520 c         1992 g         5714 t
ORIGIN      
        1 attaggaatt catatgcatc acctaacata tcaatttcca tgtcactgtg aacgaatggt
       61 aagtcgtcaa gattaaccat gactttagag attaaagcag tacgttcttt gacattgtta
      121 cctagtcgcg ttgaactcaa atccatatcg ctgaacagac cgataaagtc attttcactt
      181 tcttcaccta atgttgatgt ttcaacttta cgaattgccg tcgccaggtg ttcgatatcg
      241 aaatcttgcg tttcaatttc acgaatcatc gcactgaata aatcttctgg ctcaatgaag
      301 taaccgactt ggtcaattaa ttctgctttt aagtcttcac ggtattcttc gtctgcccat
      361 gcttcttgat acgtgatgtc ttcacctgac aaggcatctg catattcttg ttccgctttt
      421 tcagataaga agcgatagaa aatcaagcct aaaatgtaat tacggaattc actcgcatcc
      481 atattccctc ttaaatcatt cgcaatcgac cataattttt tatgtaattc agcttgttgc
      541 tgacgttgtt tttcagtaat agacatgtga ttcctccgcc tttgaataag taatttatct
      601 ctttgtgtaa tagatttatt ataacatttg gttatgttgc gatgtggaga attttgatgt
      661 tggtggtgga aattttacct ttatggagat tgggatagga ttcatgacac acaaaccaaa
      721 acggcttaac gacgatatcg attgatgcat cctttttgta taagctatgc gcaccaattt
      781 acatttcacc gttaagccgc ttcaattact tttaattatt cgtaatgatt tactttaagt
      841 taacttcaat atctttaatt tgtttgcttt ctatgacttc ccccatatat ttaaatttta
      901 atttagatct taaatcaagg ttataaaaac tgccatcttt caagctaatt ttgaccctac
      961 catcttttga gattgtttta taaagtccgt atttttcaat tagatgcttt ctcaacttat
     1021 aatccagttc ttttagtgtt attttttctt ttttaatgta ataagggtaa cctttcacaa
     1081 aagcatcttc acccttttct tttgaaatat ttaatattgg tgcactgaca actccagatg
     1141 ttttattatt ctgtattaca ccaccaacag tataaaatat atcgtgctta tctctttttt
     1201 cttgaacaaa gaaaacatct aacccctcat aactacgctg ttgaaattta cttttatcat
     1261 ttccaggcag taaaacttga atcttaatac ctctaaactt aaaacgtaag ttgtttttac
     1321 catgtttcaa agcactaata tttttcattt ccatagtctt tccagtgtag tatcggtata
     1381 atgcttcctt gtcatgttta tttactgact tttgattttg ttttgcatga cctgaatgaa
     1441 cttctgttgt taaagttcct gttgttaaaa ttcctaaagc taatgtcgct tttgctaatg
     1501 ctgtaaattt catatttatt tgctccaatc ttaatatatt ggattgtttt cattacgtaa
     1561 tttgaatcat acatttttat tataacgtgc atcgtttcat acgataatta acctcgattt
     1621 aaatatactt gaattattct taatgaaaaa caaatatatt ttaatgttca ggttaaatga
     1681 ctttcattat ttcatttagt tgttttaccg gattatcgtt tactacaact gatgatgtta
     1741 ctctgttctg ctctttgaat tacaaaaaca acttaacaac agtaatgtat ttaacacagt
     1801 tccttatata aggacacaaa tgccaattca cattttgtcg ttaagccgct tcttaagcta
     1861 ttatgctatt aactcgaact aattcaaatt cacttcaata tttttaattt gcttactatc
     1921 cattacatca aacatacgtt caaaacttaa tttttcactt aaatcaattt catgcttctt
     1981 ttcgtctttc atattgataa caattctacc tttatcagac gttcctttat acaatctata
     2041 tttttcgatt aagagttttc ttattttaaa gtccagttcc ttcaatgata cttcttcctt
     2101 ttgaataaaa aacaactcgt ttatcgaaaa gccattttta gcatcaactt ttttaacttg
     2161 tagacttgga ttacttacaa atccaaacac tgatctcaca tttttctttg ttataccgcc
     2221 aacgctatat atgccacctt ttatatctat taattcaggt actgcaaaga catcaaggcc
     2281 atgtgttttt tctttatatt tatttttatc gtcaccaagt aaaaatactt taaaagcttt
     2341 atttcgttgt ttaaagttta aaacgttaga gccatagtaa tcttcgcttt taacactaat
     2401 gtttgttggt tcaaaacttt cttcagaata gtattgatgt agcatattga tataatattt
     2461 gcgttgtgtc tcatcaagtt ctactttcgc gtgaccagtt tgactttctg ctgtaaacac
     2521 acctgtagtt aatattccta atgctaatgt tgctttagct atcgttgtta atttcatatt
     2581 tttttgctcc aatcttaatg tattggattg ttattattac gtaatttgaa ctatctgtct
     2641 ttattataag gtgcatcaaa acagactgac attaacgctc atttaaataa acttgaatca
     2701 ttattaatga aaatcaaacg tattttaaca ttcgtattaa ctgattttta atagcaacat
     2761 aaatattttt ttggtgaatc attgttcttt ccgattagtt ttaaatctta agctattggt
     2821 tataaagtgt acaaaaaagc agcttaataa cgtagtcaat gttcgatatg tttttattat
     2881 aaaaacacgt atcaaaatca ttaaacatgg gattattaaa ccgcttctta agctttcatt
     2941 ctatatatat cattgattat ttcaaattca cttcgatgtt tttaatttgt tcactattaa
     3001 tgacatctgc catacgctcg aaatctaatt tatcacttaa atcaatttca tacttatttt
     3061 catctttcat attaataaca attctacctt tatcagctga cccttcatac agtttgtatt
     3121 ttttaatcaa cagttttctt attttaaaat caagttcctt caatgacact tcttcctttt
     3181 gaataaagaa aaattcatca atagaaaaac cgtctttatc gtctattttt ttaactagta
     3241 agttcggcgt tcttagagac tcaaatattg attttacgtt tttctttgtt acaccactaa
     3301 cactaaatat tcttccatct aaatctacta attctggtac cgcaaagaca tctaaaccat
     3361 gtgttttttc tttgtattta ttttcatctt ttcccaataa aaacacttgg aacttttgat
     3421 tttgttggtt aaaaagcaaa acgttagagt cataataacc ttgactttgg ccactaacat
     3481 ttgttaactc ataactaggt cctgaatagt attgatgtaa cttgtttgta tcatataaac
     3541 ggttcatttt ttcatacttt ccttttgcat taaccgattg attttctgtt atcattacac
     3601 ttgttgttaa tattcctaat ataaatatcg ctttagctat cactgtaaat ttcatattca
     3661 tgtgctccaa tcttaatata ttggattgct tttattacgt aatttgaata atacaccttt
     3721 attataaagg gcattgagac agactgacat taacactcgt ttaattaaac ttaaatcatt
     3781 gttaatgaag agctaattaa tattcaatgg gcatcacttt caagagcaat gtaaattttt
     3841 agtatgctca ctcataacct gcgttataaa acgtaaaaaa aagcctaacg acaaggttgt
     3901 tttaaatacg ctccttaatg taaggtgtac gtatctattc aacatttcat cgttaagctg
     3961 cttcaaattt attactttag agtcattgat tacttacttt aaatttgttt caaagtcact
     4021 tcaatcttat taatatcctt actattcaac acatcaccca tgcgctcgaa ttgcaattta
     4081 tcacctaaat caatttcttg cttttctcca tctttcaaat tgatagtgat cttaccgtat
     4141 ttagtcgtac ctttatataa accataattt ttaactaaat gttgtctaat tttgaaatca
     4201 agttctttca gtgaaacttc ttctttatta attgaaaatg agtcaattga tgcatctaaa
     4261 tttccgccat acactttatt aacaaataaa tgtgtattag tttcagaaga tttgttattt
     4321 ttcttagtca caccaccaac agtagataat ctaccgtttg gatcaattaa ttcttttacc
     4381 acaaagacat ctttgccttc aatgccttct ttatatttct ctttatcttt acctaataag
     4441 aataattggt gattttgatt ttcttggtta aagcgtacaa cgttagaacc gttataattt
     4501 tcaaccttac cactaatatt actgaattca aaactttctg atgagtagta tcgatgtaag
     4561 tctttaatat catataaatg ttgtactctc tcttgctttt cttttgcttg aactgcttgg
     4621 ccttctgatg taatcacacc agtagttaat aagcctaatg ccaatgttgc tttagctaac
     4681 gtttttaatt tcacagtact attctcccaa tctatttata aatttgtctt aatatatttt
     4741 tatatgatta attcaattac gtaatacgaa caatctacta tcattatata agtgagatac
     4801 tgcgctatga attaacctct ttttaactat ttttgaacca acgttaagtt agttaatgaa
     4861 atcctaacag tattaattat tttttataac acaatactaa ttttttaact attcacactt
     4921 tccctcaatt taattatgtt ttccacattg tttcatgtca cgaaaaggac aacgcgcgac
     4981 tataagtatc aaccgttttt ccaaaaactt gatcataaac ccgctccttt tttcatcata
     5041 acaaaataaa aaagaagcta agcaatatgt tatcgcttaa cttccctaca attactagtc
     5101 tgcttgtcca aagattattt atattctagc tcaacattaa tttctttgat tttggtacca
     5161 tctatcgtgt cacccatgcg atgcggttgt agtttttttg taagttcgaa agtataaaac
     5221 ttatcatctt ccattttaac tacaatttta ccttttctat tattaacagc accatataat
     5281 ttttcttctt ccatcaattt ttttcttaat ttaaagtcca actcttttaa cgagatttct
     5341 tctttagtaa ttttaaattt actatcttta gacttttccg atgattcatc aatttttctt
     5401 gttactttaa catcgacttc tttactaaat tctttactat ttgtcttact taaaccacca
     5461 attgaatatt gtcttccatt aacagtttcc tcctcgatga ctaaaaatgc atcttgctta
     5521 tcatgctcac cttgagggta tttttcaata tctttaccaa gcaagccaac aaaataatct
     5581 tttcgatcct tccaaacata tactccttta tctgtcactt tctgtctata caaaccatca
     5641 agatttttta actctatact tggcttgcta tagtagtatt ttaacgattt ataattgtgt
     5701 tgaccttgag ttgattctgc cgcttttact gtttgacttt ctgttgttat tacaccagta
     5761 gctaacaatc ccaatactaa tgttgcttta gctaacgttt ttaatttcat agtactattc
     5821 tcccaatcta tttataaatt ttgtcttaat atatttttat atgattattt caattacgta
     5881 atacgaacaa tctactatca ttatataagc gtaatactaa gctatgaatt aacctctttt
     5941 taactatttt tgaaccaatg ttaagctaat taatggaatc ctaacagcgt taatctattt
     6001 tttaaactta acgcagcttt tttaactatt cacactttcc ctcaatttaa ctatgttttc
     6061 cacattgttt catgtcacga aaaggacaac gcgcgactat aagtatcaac tatttccaca
     6121 agttttattg gtgtttttat tattcatcga tacgcttcat tttcatctct ccaacacaaa
     6181 aaagaagcta agcaacttat gttgcctaac tcctctatac tatccatatt ttactattat
     6241 ccatatttca ttgaattatc taatgttggc ttctattttt tcaatatttc taccgtcaat
     6301 gacgtcactc atgcgatttg tttgtaattt tttattaagt tcaaacgtat aatagccgcc
     6361 atctttcatt atcactttta tcttactatc tttaggaaac tttttataca gatcaaaatt
     6421 ttgaattaaa tactgtctca atttaaagtc gagttcttta agtgaaatct cttctttata
     6481 aatgtagtgt actctaccgt acgtagcaat accgtcacct tcatctctct tgatttgaaa
     6541 tcttggtgcg tttatataat cataataagc gtcttgattt ttcttagtga caccaccata
     6601 tgaaaacact gtgccattac ggttttccgc ttctttaaca acaaatatgt ctaatcccgg
     6661 atttttacgt gctttaaatc tttcaatatc tttaccaaat atctgtactc ttgtgaattt
     6721 tctattttta tcaaagataa ggtaatgctt gccacctttg ctataacgat aaccagtaac
     6781 atttttaagt tccttacttg cgccactata gtaatctctt aagtcaaaga tatcttttgt
     6841 cacattttca tattttgctt tatgttcact cgcatttaca gtttgatgca atgacgttat
     6901 tgttcctgtt gctaaaatac ctaatgctaa acttgctttc gcaattgctg tcattttcat
     6961 agttgtatgc tccattcgta attattagat ttgttcgctt acgtctattg aatcatacag
     7021 ctttattata gttagcgtat ttgacctttc acattaaacc atgtttaata atcattgaat
     7081 cattattaag taaattaagg aatctataat gttcgttaaa taaaactgat cccgttgtgc
     7141 ttcacacccg atagataggg atttacagat aaattcaggt ctcttccacg tcatatttgg
     7201 acccatcgaa aattcgggtt ctcaaatcat cgaacataac aaaagaagct aagcaacatg
     7261 taggccgttg tcacttaact tcttgttttt ccgatgacag cttctattta gagaatgtca
     7321 tgattatttt atattcactt caatgttatc aatattagtg ccatctatga catctgccat
     7381 gcgattttct tgtaattttt tgtgcaattc aaacgtgtac tttccaccgt ttttcatttt
     7441 aataacaatt ttacctgaac caacgttacc gtacagatta tttttttcaa taagttgttt
     7501 tctcaattta aaatcaagtt ctttcaagga aatctgttct ttagtaatct tgaattctga
     7561 aacatcatga gagattgtac ctttattatc ttccttagta attcttactc ctgctttgtg
     7621 atcaactttt ttactattac tctttgtgat accaccgaca gaatattttt ccagattgta
     7681 attattttct tctaaaacga caaatacatc gacattccta tgtactcctt caccatattt
     7741 tttatcatct ttaccaacta aagcaatttt atatatgaaa taatctggga caacattcat
     7801 aaatcttatt gtcgtccatt tttttaaaat aataccaatc tcatttttaa attctaaact
     7861 tggtttcgta taatacgctc ttaaatcttt aaatttagga tttatttctg ttggtacttg
     7921 ttttgtggtt ggcgattgtg gtgtgtctga tttagtagat tgcattggtt gtggcgtgtt
     7981 tgttgatgga ggtgttgtca ctttagttga aggcggtgtt gtcgcatttg ctgtttgttg
     8041 cggtgcttct actttagttg agggcggtgt tgtcgcgttt ggttttgatt gcggtgcttc
     8101 tattttagtt gagggcggtg ttgattgtgg tgcttccact ttagtggaag atggtgttgt
     8161 cgcgtttgct gcttgcgttg tcgttgtgat tacacctgtt gttaaaaggc ctagtgctaa
     8221 acttgtttta gcaatcgttg ttattttcat agttgtatgc tccattcgta attattagat
     8281 ttgttcgatt acattcattg aatcatacag ctttattata gatggcgtat tgctccattc
     8341 acattaaacc ttgtttaact atatttgaat catcgttaag taaattaaga aatccataat
     8401 gttcgttaaa taaaaatgat tttgatgtga ttcaacactt ggcacatttg aagtttcgtc
     8461 acttttaaga catagaaatg ccacttttac aaacaaatga atattcgtct ttttacatca
     8521 ttacgcataa taaaagaagc taagcaacat gtaaaccgtt gtcacttaac ttcttgtttt
     8581 tccgatgaca gcttctattt agagaatgtc atgattattt tatattcact tcaatgttat
     8641 caatattagt gcctgccata cgatgctctt gcagtttttt gtgtaattca aacgtatatt
     8701 tcccaccgtt tttcatttta ataacgattg ttcctgaacc catgttaccg taaagattat
     8761 gtttttcaat aagttgtttt ctcaatttaa aatcaagctc tttcaaggaa atctcttcct
     8821 tagtaatcat gtattctgaa acatcgcgtg aaatcatacc ttgattatct tttttagtaa
     8881 tgcttaattc tactttgtga ttaacttttt tactattagt cttcgtgatg ccaccgacag
     8941 aatatttttt caattgatat ttattgtctt ctaaaacgat aaatacatcg atattatcgt
     9001 aaggtccatc tttatatttt ttctcatctt ttccaactaa agctatttta tagatgaacc
     9061 tatttggaat aacattcata aacctaaccg tcgtccatgg tttgagcata aatccaaact
     9121 gcttttcaaa ttcaaaactc ggttttgtat aatacgctct taaatcttca tatttaggag
     9181 tcatatctgt ttgtgcttgt tttatggttg gagattgtgg tgtgtctgat ttagtagatt
     9241 gcattggttg tggcgtgttt gttgatggag gtgttgtcac tttagttttc ggcgttgtgg
     9301 attcggttgt cgtttgtgat tgttcttgtt taggcgctgg cgttgctgat atattaagcg
     9361 ttttctgctc ttcttgttta ggttgtgata ttttttctat tttggaagct gaggtttttt
     9421 cctcattagt atttggtgcc ttttcgagtt taggcgtgcg ttcttgtctt gtgttagctg
     9481 cttgtgttgt cgctgaattt gcacctgctg ttatgtttat cattgctaat cgctctgctt
     9541 taagcgttgg tactttgtca actttagttg attgtatttt ttctgctttg accgattgcg
     9601 tcgttactgt aattgcgcct gttgttaaaa gccctagtgc taaactggtt ttagcaattg
     9661 ttctcatttt cataattgta tgctccaatc tatattatat tcgattgtct ttttacgtaa
     9721 tttgaatcat acaacatcat tatagatggc gttctaagat aatcacatta aacccctttt
     9781 aacaattatt gaagtattat taagtaattt aagcaaaaaa taatgagtga gtatgagatt
     9841 aatatagcgt ttctatgtgc ctttgaaata atttttaagc attaaaaaga agttaagcaa
     9901 cgtttgatcg tcacttaacc tctctatttc aatttcaact tatttcgtca tcaagtatat
     9961 gtgttatgct tttataactt tgatttcaat tctatcaata tctgtgacat tgataacatc
    10021 ggacatacgg tcttcttgta actttttatc caattcaaat gtatactttc catagtattt
    10081 ctttttgact gtaatttttc ctgtactcat ttcaccgtaa agaccataat tatcaataag
    10141 gtattttctt aatttaaaat caatctcttt caatgacatc gcttctttat ctattttaaa
    10201 tgggaaaaag tcataatcat attcaccagt atgatcttct ttaataactc ttgcttctgc
    10261 tattaggtcg acagctttat cgtttgcact cgtgataccc ccaatagagt actttgcacc
    10321 ttcaaatctc ttatcctcat taacgtaaaa tatattaaga ttacgatgta cacccgtatg
    10381 ataatgttgc ttatctttgc caattaaagc aatattatta acagaattac catctatgat
    10441 attcataaat ttaatacttg gttgaatgaa actgatataa cctgtcacat ttttatattc
    10501 aatactaggt tgattataat aagcttttaa ttttttgcta ttttcactta ttacaatagg
    10561 tttcttttcg gcatgaactg gtttttccgt tgtagtgttt acacctgttg ctaatattcc
    10621 taataacaaa cttatttttg caatattttt cattttcata gttgtatgct ccaatctatt
    10681 ataattagat tgttttatta cgtaatttga atcatacacc catattatag gagctgtatt
    10741 cggatattca cattaacctg tttttaacta ttcataaaat atgattaagc tatttaagca
    10801 aaagataatg cgtggtgcga ctgtttgtgt gagttttgta acttttcccc tcaaaaaaag
    10861 aagctaagca acagtacgtc gcttaacttc catatatttc cataacaagc actattcaac
    10921 atagcgcttt gttgttagaa agtattattt catttctact agaattttat taatcttagt
    10981 gccgtcgatt gactcaccca tacgttcttt ttcaagtttt tgacttaaat cgattgtatg
    11041 tgttgtgcca tcattcattg taattgtaat ttgaccttgt ttaagaccat ttgaatacaa
    11101 gccgtgttgt ttaatcgcac gttctcttaa tctataatca agttctttta atgagatgtc
    11161 ttcttttgaa atgtagtaaa aatctttaag tacatcttca ttatctttct tgatttctaa
    11221 aattggcgta ttgatataat caatatactg cacactattt gattttgtaa cgccaccaat
    11281 tgagtaattt gttgcttgtc tactgtcacc ttctctaagg ataaacacat ctatatttga
    11341 gttttctccg tctttaaatt tatctttatc agatccaagt aaagtgattc gagaatgctg
    11401 ttgccctact gtgacttcta aatagtgttt accctcatca gtatatttaa atccagtcac
    11461 atttttacgc tctaaaattg gtttattata atagtgtttt aactctgatt cactttgttg
    11521 tttaacttct gctttcgctt gtactgattg tacattcgat gtaattacac ctgttgctaa
    11581 cattcccaat gctaaacttg cttttgctat cgctttaaat ttcataattt ttagccccaa
    11641 tctatttaaa tttgattttt caattacgta atatgaacaa tctacctaca ttatattgag
    11701 gcgctatccc ctttcaaatt aaacctcatt taactaaact tgaatcattg ttaaggtaat
    11761 taataaaatg ctaactgtta ttaatcaatt cttatccgtc gagactcttt tttatacaaa
    11821 tcacacttta taccattttt attttaaaaa ctgtaaaact ttcagacaca aaacagacat
    11881 catattgtcg tagtacctga ttaaaatttt caatgatatt agtgatacac atcaactaaa
    11941 acgcgtcatt acggcatttt caacattaat aatatttacg tatttactat acacgtcgac
    12001 aataaataca gattagaatt ttttataaaa tcaaatgttt tgaaaaccat caaataagta
    12061 ttatgttatg tatataaaga ttaggagatg aagtgaatga atattatgtt aacaggtgct
    12121 acaggtcatt taggcacaca tattacaaat caagccattg caaatcacat agatcatttt
    12181 cacattggtg ttagaaatgt tgagaaagtt ccagaagatt ggcgcggaaa agttcctgtt
    12241 cgacaattag attattttaa tcaagaaagc atggtagaag catttaaagg aatggatacc
    12301 gttgtgttta ttccaagtat tatccatcca tcattcaaac gtattcctga agtggaaaat
    12361 ttagtatatg cggcaaagca gagcggcgtt gctcatatca ttttcatagg ttattacgca
    12421 gatcagcata ataatccatt ccatatgagt ccttattttg gttatgcagc acgtctattg
    12481 gcaacaagtg gcattgacta tacgtatgta agaatggcaa tgtacatgga tccacttaaa
    12541 ccatatttac cagaattgat gaatatgcat aaactgattt atccagctgg cgatggtcgt
    12601 attaattata ttactagaaa tgatattgct agaggtgtca ttgctattat taaaaatcca
    12661 gatacttggg gcaaacgcta cttattatca ggctacagtt atgatatgaa agaacttgct
    12721 gcaattttat ctgaggcatc aggcacagaa attaaatatg agcccgtttc attagagaca
    12781 tttgcagaaa tgtatgatga acctaaaggc tttggtgcat tattggcatc aatgtacgac
    12841 gcaggagcaa gaggactatt agaccaagaa tccaatgatt tccaacaatt agtcaatgat
    12901 caaccacaga cactgcaatc atttttacaa gaaaatattt aataataaag gagcgttata
    12961 gtgaatatca tctcaacaat tttaatcata tttgtggcat tagagttttt ctatattatg
    13021 taccttgaaa cgattgctac aacttccaaa aagactagcg agacatttaa tataagcgtc
    13081 gataaattga aagacaaaaa tattaaccta cttttgaaga accaaggcgt atataacggt
    13141 ttaatcggag ttttgctaat atacggtttg tttatcagca gtaatccaaa agaaatatgc
    13201 gcagctattt tagtgtatat cattggcgtt gctatttatg gtggcctttc aagcaatatt
    13261 agtatctttt tcaaacaagg cacattgcca gtattggcac tcatatcaat gctttggtaa
    13321 gtattggtgt ttgggggggt ggagatgtag tcggaggttt ggaggatttg agcgaattgt
    13381 gtgtggactt tagactcaga gtatttcatc ctaattattt caagcagagg tgacagtagc
    13441 gttgcctctg tttccttata gaaaaattat ttaatgaaga aaacccatat ctgatttaat
    13501 tttcagctga taaatactcc atatattaga atggctactt tatctattgc atcaatcctt
    13561 taaaacaaaa aacccatgat ttcgaaattc ccgtatgatg gggttcctac tctcatggat
    13621 cagttaaata aatattatca ctatcagttt attatttcaa tattattaac aatatatgta
    13681 gtcgtaaaag gaaagaggac atgagaactt cggtgttgat tggcattaca taacgcttcc
    13741 aaacatatta tttggtaaca ataagaaact atttacacaa tatattttgt atagtaaaat
    13801 tattttataa tatttaaatc caattgcaca aggagtgatt atcatggtac cagaagaaaa
    13861 aggttctatt actttgtcaa aagaagcagc tatcatattt gcaatcgcaa aattcaaacc
    13921 atttaagaac agaattaaaa ataacccaca aaaaacaaat ccatttctta aattacatga
    13981 aaacaaaaaa tcttaatcac tttatttata gcatttctaa tctcagaaat gctataaagg
    14041 acaacgccct ctttcataac tatataagtc aagaaaccaa gacatttcaa acatctttaa
    14101 ccccttcaat agcacattcc ctaaaacata aagcaataac aatgaacgat caaaattcct
    14161 tacgtactta tgatgtgtca gtgaatcgtc tacacttaat tgaacaaatt ctatgagaat
    14221 agatattgtt aaattaagaa agtagtcaat tttattatga caaaagaaag aagaacattt
    14281 agttcagagt ttaagttaca aatggttaga ttatataaaa atggtaagct taagaatgaa
    14341 attatacgaa agtatgattt aaaaccctca attatctcaa attcgataaa acaacaccaa
    14401 aatactggac ccttcaatca tcaagataat ttaaaaagtg atgaaaaaga gttaataaaa
    14461 ttacgcaaag aagttcaaca tttaaaaatg gaacatgatg ttttaaagca aattttaaag
    14521 ttgatttaga aactgaactt tttaaagata cattacttga agattctaat ttatctgatt
    14581 atataaagaa ccaacttcca acgatatgga gagactaaga aatagtttaa atttatttaa
    14641 tttcaataaa aactcataat aatatttaag taagttagat tgcttttagc attaggaatt
    14701 cgcttat
//
LOCUS       DAMQWL010000061        14610 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.061, whole genome shotgun sequence.
ACCESSION   DAMQWL010000061 DAMQWL010000000
VERSION     DAMQWL010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 14610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14610
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.061"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..911
                     /gene="lukS-PV"
                     /locus_tag="PF788_001652"
     CDS             <1..911
                     /gene="lukS-PV"
                     /locus_tag="PF788_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Panton-Valentine bi-component leukocidin subunit
                     S"
                     /protein_id="HDG6303913.1"
                     /translation="LSLGIITPIATSFHESKADNNIENIGDGAEVVKRTEDTSSDKWG
                     VTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKT
                     NDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNY
                     ISEVERQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPP
                     LVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHN
                     AFVNRNYTVKYEVNWKTHEIKVKGHN"
     gene            907..1890
                     /gene="lukF-PV"
                     /locus_tag="PF788_001653"
     CDS             907..1890
                     /gene="lukF-PV"
                     /locus_tag="PF788_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Panton-Valentine bi-component leukocidin subunit
                     F"
                     /protein_id="HDG6303914.1"
                     /translation="MDMKKIVKSSVVTSIALLLLSNTVDAAQHITPVSEKKVDDKITL
                     YKTTATSDSDKLKISQILTFNFIKDKSYDKDTLILKAAGNIYSGYTKPNPKDTISSQF
                     YWGSKYNISINSDSNDSVNVVDYAPKNQNEEFQVQQTVGYSYGGDINISNGLSGGGNG
                     SKSFSETINYKQESYRTSLDKRTNFKKIGWDVEAHKIMNNGWGPYGRDSYHSTYGNEM
                     FLGSRQSNLNAGQNFLEYHKMPVLSRGNFNPEFIGVLSRKQNAAKKSKITVTYQREMD
                     RYTNFWNQLHWIGNNYKDENRATHTSIYEVDWENHTVKLIDTQSKEKNPMS"
     gene            2139..2324
                     /locus_tag="PF788_001654"
     CDS             2139..2324
                     /locus_tag="PF788_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000126131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303915.1"
                     /translation="MFILNTQAHARLDQMAQQFEVVCNGLNENEGQAIQTMDQSASLI
                     RSNLIQVKEQLEKLAVY"
     gene            2415..3332
                     /locus_tag="PF788_001655"
     CDS             2415..3332
                     /locus_tag="PF788_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1672 domain-containing protein"
                     /protein_id="HDG6303916.1"
                     /translation="MFKRTKLILIATLLLSGCSTTNNESNKETKSVPEEMEASKYVGQ
                     GFQPPAEKDVVEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGKGVEVFVHCDDH
                     DIVFNASIPFDKSIIESDSSLRSEDKGDDMSTLVGTVLSGFEYRTQKEKYDNLYKFFK
                     DNEEKYQYTGFTKEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIHKNDKEFKE
                     GMEQARKEVNYAANTDTVTTLFSTKENFTKDNTVDDVIELSDKLYNFKNKPEKSTITI
                     QIGKPTINTKKAFYDDNDPIEYGVYRKDE"
     gene            3389..4327
                     /locus_tag="PF788_001656"
     CDS             3389..4327
                     /locus_tag="PF788_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020444682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1672 domain-containing protein"
                     /protein_id="HDG6303917.1"
                     /translation="MFKKAKLILIATLLLSGCSAMNNESKKDTNTETNTETKSVPEEM
                     EASKYVGQGFQPPAEKDAIEFVKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVE
                     VYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKY
                     DNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEYFYITYLSRNLKEYRKYYEPLIH
                     KNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNRKEKINNVIDLSEKIERTKDM
                     PIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE"
     gene            4320..4526
                     /locus_tag="PF788_001657"
     CDS             4320..4526
                     /locus_tag="PF788_001657"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303918.1"
                     /translation="MNKINDRDLTELSSYRVYQDINKDNDFTVNEKRFKQADVFEDLY
                     REKLKDTNKLREYNYLQNETFKSA"
     gene            4541..5455
                     /locus_tag="PF788_001658"
     CDS             4541..5455
                     /locus_tag="PF788_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1672 domain-containing protein"
                     /protein_id="HDG6303919.1"
                     /translation="MLKKAKFILMATILLSGCSTTNNESNKETKSVPEEMDASKYVGQ
                     GFQPPAEKDAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVIGSGDGVEVFVHCDDH
                     DIVFNASIPFDKSIIDSDSSLRSKDKGDDMSTLVGAVLSGFEYRAQKEKYDKLYKFFK
                     DNEEKYQYTGFTKEAINKTQNSGYENEYFYISAIPYNLAEYRDYFEPLLNKSDSEFSK
                     ELSNVKKQLKDKSKVSVTTTLFSKKKNYTKKSNSENVIKMAEEIKKDKEIPNGIELSI
                     KFSDNKINTVKPNFNGESTSEYGVFDQE"
     gene            5654..5773
                     /locus_tag="PF788_001659"
     CDS             5654..5773
                     /locus_tag="PF788_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303920.1"
                     /translation="MTIFTQLSDRIKKAISKINQANNIPNNARKSPMYHSPIT"
     regulatory      5856..5990
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            6052..6597
                     /locus_tag="PF788_001660"
     CDS             6052..6597
                     /locus_tag="PF788_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HDG6303921.1"
                     /translation="MQQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSL
                     LATFTFGPVAGIVVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTK
                     SLITGLIIATIVMTIVLSILNYFVLLPLYGMIFNLADIANNLKVIIVSGIIPFNIIKG
                     IVISIVFILLYRRLANFLKRI"
     gene            complement(6703..6951)
                     /locus_tag="PF788_001661"
     CDS             complement(6703..6951)
                     /locus_tag="PF788_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002449743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HDG6303922.1"
                     /translation="MAKYTIVDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNQGT
                     AEVPEELYEDMEDAIDGCPTDSIKIADESFDGDALKFE"
     gene            7059..8012
                     /locus_tag="PF788_001662"
     CDS             7059..8012
                     /locus_tag="PF788_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDG6303923.1"
                     /translation="MQHIIKTALQQTFNYKTNKSIYNILVGKKSHQTFFDACSQQQLS
                     LYHSLPLLKYPSFELFLEKINEFNAEMEIMLHPRYTFESMGQTFQAIQLLVQTMSNTK
                     QHVFHFVPISQNNKIQETVKIVYNYIKENQLQIDFENELHNLFKAITLKGPCYLHYYL
                     QGYDEPMYTRQQVSLIEKLSQQQLFEYEMNNLVTMMFELESGEYTILSKIIMKPTLLN
                     QTYITYTKLLEQFTMEDIAAQQQVKINTIEDHVLEILIKGYMSNYDDYVELEDQLQFL
                     NFYQQHRGERLKFYKEQFDTLSYFQLKVLIVGFERGDLNVA"
     gene            8002..9381
                     /locus_tag="PF788_001663"
     CDS             8002..9381
                     /locus_tag="PF788_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HDG6303924.1"
                     /translation="MLHDILRNKFGFESFKPGQQEIIESIMSQQHTLGILPTGSGKSL
                     CYQIPTYLSGKPTLIISPLISLMDDQVMQLKINGEKRVTCIHSGMDEIEKKHNIKCLR
                     HSRFIFLSPEFLLQPSNFKLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHF
                     KEAVVLALTATAPPHLQDDLTEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLL
                     PFLQQSGPTIIYVSSKKMCLNLAQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIP
                     IIVATSAFGMGINKKDIRTIIHFHLSTSPSNYIQEIGRAGRDGELSQAISLFQPDDKY
                     ILETLLFADMITEEDVQNFEIGEFLAPDKQAVLTTLQSFYSIGALKQIFKQSFKRKQL
                     GFFRMIGYCKLDQCRRKYLLEFFGEYPPAQDRCCDNDSNITDIAILNKKKVIRSIGFD
                     EKLQNLFLR"
     gene            9534..10994
                     /gene="ebpS"
                     /locus_tag="PF788_001664"
     CDS             9534..10994
                     /gene="ebpS"
                     /locus_tag="PF788_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elastin-binding protein EbpS"
                     /protein_id="HDG6303925.1"
                     /translation="MSNNFKDDFEKNRQSIDTNSHQDHTEDVEKDQSELEHQDTIENT
                     EQQFPPRNAQRRKRRRDLATNHNKQVHNESQTSEDNVQNEAGTIDDRQVESSHSTESQ
                     EPSHQDSTPQHEEEYYNKNAFAMDKSHPEPIEDNDKHDTIKNAENNTEHSTVSDKSEA
                     EQSQQPKPYFTTGANQSETSKNEHDNDSVKQDQDEPKEHHNGKKAAAIGAGTAGVAGA
                     AGAMAASKAKKHSNDAQNKSNSGKANNSTEDKASQDKSKDHHNGKKGAAIGAGTAGLA
                     GGAASKSASAASKPHASNNASQNHDEHDNHDRDKERKKGGMAKVLLPLIAAVLIIGAL
                     AIFGGMALNNHNNGTKENKIANTNKNNADESKDKDTSKDASKDKSKSTDSDKSKEDQD
                     KATKDESDNDQNNANQANNQAQNNQNQQQANQNQQQQQQRQGGGQRHTVNGQENLYRI
                     AIQYYGSGSPENVEKIRRANGLSGNNIRNGQQIVIP"
     gene            11119..11235
                     /locus_tag="PF788_001665"
     CDS             11119..11235
                     /locus_tag="PF788_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303926.1"
                     /translation="MLFNKVFSRILAYQFNFLNSHQKDKTPQSTNLTRKNKK"
     gene            11396..12382
                     /locus_tag="PF788_001666"
     CDS             11396..12382
                     /locus_tag="PF788_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpdA family putative bacillithiol disulfide
                     reductase"
                     /protein_id="HDG6303927.1"
                     /translation="MQKVESIIIGGGPCGLSAAIEQKRKGIDTLIIEKGNVVESIYNY
                     PTHQTFFSSSDKLSIGDVPFIVEESKPRRNQALVYYREVVKHHQLKVNAFEEVLTVKK
                     MNNKFTITTTKDVYECRFLTIATGYYGQHNTLEVEGADLPKVFHYFKEAHPYFDQDVV
                     IIGGKNSAIDAALELEKAGANVTVLYRGGDYSPSIKPWILPNFTALVNHEKIDMEFNA
                     NVTQITEDTVTYEVNGESKTIHNDYVFAMIGYHPDYEFLKSVGIQINTNEFGTAPMYN
                     KETYETNIENCYIAGVIAAGNDANTIFIENGKFHGGIIAQSMLAKKQTPLES"
     gene            complement(12497..13465)
                     /locus_tag="PF788_001667"
     CDS             complement(12497..13465)
                     /locus_tag="PF788_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDG6303928.1"
                     /translation="MKHLLVIHTGGTISMSQDQSNKVVTNDINPISMHQDVINQYAQI
                     DELNPFNVPSPHMTIQHVKQLKDIILEAVTNKYYDGFVITHGTDTLEETAFLLDLILG
                     IEQPVVITGAMRSSNEIGSDGLYNYISAIRVASDEKARHKGVMVVFNDEIHTARNVTK
                     THTSNTNTFQSPNHGPLGVLTKDRVQFHHMPYRQQALENVNDKLNVPLVKAYMGMPGD
                     IFSFYSREGIDGMVIEALGQGNIPPSALEGIQQLVSLNIPIVLVSRSFNGIVSPTYAY
                     DGGGYQLAQQGFIFSNGLNGPKARLKLLVALSNNLDKAEIKSYFEL"
     gene            13542..14201
                     /locus_tag="PF788_001668"
     CDS             13542..14201
                     /locus_tag="PF788_001668"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500015.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDG6303929.1"
                     /translation="MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYK
                     YLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKE
                     PVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLR
                     GIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQI
                     K"
     gene            14232..14348
                     /locus_tag="PF788_001669"
     CDS             14232..14348
                     /locus_tag="PF788_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303930.1"
                     /translation="MQRLTHIQNECADNDLLKLKGDFYSMMNESCLFIFGKS"
     gene            14465..>14610
                     /locus_tag="PF788_001670"
     CDS             14465..>14610
                     /locus_tag="PF788_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303931.1"
                     /translation="MSVTNLNIAKEADLVTKNVLCNNSRKMHYIRSSYYSNVKVAYLR
                     GFLF"
BASE COUNT         5661 a         2118 c         2502 g         4329 t
ORIGIN      
        1 cattgtcgtt aggaataatc actcctattg ctacttcgtt tcatgaatct aaagctgata
       61 acaatattga gaatattggt gatggcgctg aggtagtcaa aagaacagaa gatacaagta
      121 gcgataagtg gggggtcaca caaaatattc agtttgattt tgttaaagat aaaaagtata
      181 acaaagacgc tttgatttta aaaatgcaag gttttatcaa ttcaaagact acttattaca
      241 attacaaaaa cacagatcat ataaaagcaa tgaggtggcc tttccaatac aatattggtc
      301 tcaaaacaaa tgaccccaat gtagatttaa taaattatct acctaaaaat aaaatagatt
      361 cagtaaatgt tagtcaaaca ttaggttata acataggtgg taattttaat agtggtccat
      421 caacaggagg taatggttca tttaattatt caaaaacaat tagttataat caacaaaact
      481 atatcagtga agtagaacgt caaaattcaa aaagtgttca atggggaata aaagctaatt
      541 catttatcac atcattaggt aaaatgtctg gacatgatcc aaatttattt gttggatata
      601 aaccatatag tcaaaatccg agagactatt ttgttccaga caatgaatta cccccattag
      661 tacacagtgg tttcaatcct tcatttattg caactgtttc tcatgaaaaa ggctcaggag
      721 atacaagtga atttgaaata acgtatggca gaaatatgga tgttactcat gctactagaa
      781 gaacaacaca ctatggcaat agttatttag aaggatctag aatacacaac gcatttgtaa
      841 acagaaatta cacagttaaa tatgaagtga actggaaaac tcatgaaatt aaagtgaaag
      901 gacataattg atatgaaaaa aatagtcaaa tcatcagttg ttacatcaat tgcattgctt
      961 ttgctatcca atacagttga tgcagctcaa catatcacac ctgtaagtga gaaaaaggtt
     1021 gatgataaaa ttactttgta caaaacaact gcaacatcag attccgataa gttaaaaatt
     1081 tctcagattt taacttttaa ttttattaaa gataaaagtt atgataaaga tacattaata
     1141 ctcaaagctg ctggaaacat ttattctggc tatacaaagc caaatccaaa agacactatt
     1201 agttctcaat tttattgggg ttctaagtac aacatttcaa ttaattcaga ttctaatgac
     1261 tcagtaaacg ttgtagatta tgcacctaaa aatcaaaatg aagaatttca agtacaacaa
     1321 acggtaggtt attcttatgg tggagatatt aatatctcta acggcttatc aggtggaggt
     1381 aatggttcaa aatctttttc agagacaatt aactataaac aagaaagcta tagaactagc
     1441 ttagataaaa gaactaattt caaaaaaatt ggttgggatg ttgaagcaca taaaattatg
     1501 aataatggtt ggggaccata tggcagagat agttatcatt caacttatgg taatgaaatg
     1561 tttttaggct caagacaaag caacttaaat gctggacaaa acttcttgga atatcacaaa
     1621 atgccagtgt tatccagagg taacttcaat ccagaattta ttggtgtcct atctcgaaaa
     1681 caaaacgctg caaaaaaatc gaaaattact gttacttatc aaagagaaat ggatagatat
     1741 acaaactttt ggaatcaact tcactggata ggtaataatt ataaagatga aaatagagca
     1801 actcatacat caatttatga agttgattgg gaaaatcata cagttaaatt aatagatact
     1861 caatctaagg aaaaaaatcc tatgagctaa acagatagat aatcaaaaaa tcttaaatat
     1921 gttaaaattt acaaacactt tctttctata ttagggtaac cacgtcttaa ttgacgtggt
     1981 tattttttca gggcaaaaaa agggcggatt atttaaataa ggacaaacac ttgtggaaaa
     2041 tttaaaaggt taaaaataat aaagaacttg gtataacaag ggttttatac atttgcgtac
     2101 aacgacgaaa tgtcaattta ccatcacatt atgacgatat gtttatttta aacacacaag
     2161 ctcatgcgcg tcttgatcaa atggcacaac agtttgaagt tgtttgtaat ggcttgaacg
     2221 aaaatgaagg acaagcaatt caaacgatgg atcaatctgc ctctctaata cggtcaaact
     2281 taattcaagt taaagaacaa ttagaaaaac tagctgtata ctaattaatt tattaaatgc
     2341 tacttgtttt cattgagaat aagtagcttt ttcaaacata aaagttttac aaacacataa
     2401 atgggtgatg agctatgttt aaaagaacta aactaatctt aatagcaaca ttactgctat
     2461 caggatgttc aactaccaat aacgaatcta ataaagaaac aaaatcagtg ccagaagaaa
     2521 tggaagcttc aaaatatgta ggtcaaggct tccaaccacc tgcagaaaaa gatgtggttg
     2581 aatttgcgaa aaagcataaa gataaaattg ccaaacgagg cgaacaattt tttatggata
     2641 atttcggtct aaaagttaaa gctaccaatg ttgtaggtag tggaaaaggc gtagaagtat
     2701 tcgtgcattg tgatgaccac gatatcgtat ttaatgcgag tattccattt gataaatcaa
     2761 taattgagag tgatagctca ttaagaagtg aggacaaagg cgatgatatg agtactttag
     2821 ttggtacagt gttgagtggc tttgaatatc gaacacaaaa agaaaagtat gacaatttat
     2881 ataaattttt caaagataat gaagagaaat accaatatac aggctttaca aaagaagcaa
     2941 taaacaagac gcaaaatgtc ggatataaaa atgaatattt ttatatcact tactcgtcaa
     3001 gaagcttaaa agaatatcgt aagtattacg aaccattgat tcataaaaat gataaagaat
     3061 ttaaagaagg aatggaacaa gccagaaaag aagtgaatta cgctgctaat acagatacag
     3121 taacaacatt gtttagtaca aaggaaaatt ttactaaaga caatacagtt gatgatgtaa
     3181 ttgaactgag tgataaacta tataatttta aaaataagcc agaaaaatct acaattacaa
     3241 ttcaaatagg aaagcctact attaatacta aaaaagcctt ttatgatgat aatgatccaa
     3301 tagaatatgg agtgtatcgt aaagatgaat aaattttttt aaaatgcttt ttaatattct
     3361 atataaacac ataaatgggt gatgagctat gtttaaaaag gcgaaattaa tcttaatagc
     3421 aacgctactg ttatcaggat gttcagcgat gaataatgaa tcaaaaaaag acacaaatac
     3481 agaaacaaat acagaaacaa aatcagtacc agaagaaatg gaagcttcaa aatatgtagg
     3541 acaaggcttt caaccacctg cagaaaaaga tgcgattgaa tttgtgaaga agcatcgtaa
     3601 agaatttgaa aaagtaggtg aacaattctt taaagataac tttggactaa aagttaaagc
     3661 tacaaatgtt gtaggtaaag atgatggtgt agaagtttat gtgcattgcg aagatcatgg
     3721 cattgtattt aatgcaagtc tacctttgta caaagatgcc atccatcaaa aaggatcaat
     3781 gcgtagtaat gacaacggtg atgatatgag tatgatggtg ggtacagtgc tgagtggctt
     3841 tgaatatcga gcgcaaaaag aaaagtatga taatttatat aaatttttaa aagaaaatga
     3901 aaagcaatat caatatacag gttttactaa agaagcaatt aacaagacgc aaaacgtcgg
     3961 gtatcaaaat gaatattttt atattacata tttatcaaga aatttaaaag aatatagaaa
     4021 atattacgaa ccattgatac ataaaaatga taaagagttt aaagaaggta tgcaacgagc
     4081 tagaaaagag ctaaactata ctgctaatac aaatactgta gcaacgttgt ttagtacgaa
     4141 tgatgaaagg aatagaaaag aaaagataaa taatgtaata gatttatccg agaaaattga
     4201 aagaacaaaa gatatgccaa tcaagaatac tataactact caattaggaa ataaacttat
     4261 tggcacaaaa aaagctcgtt ttgatgataa gaaagtagtg tcgtttggag catttgaaga
     4321 tgaataaaat aaatgataga gatttaacag aattgagtag ctatagggtt tatcaagaca
     4381 tcaataaaga taatgacttt acagttaacg aaaaacgatt taagcaggca gatgtatttg
     4441 aagatttata tagagagaaa ctaaaagaca caaataaatt aagagagtat aattatttac
     4501 aaaatgaaac ttttaaaagc gcataaatag gtgatgagat atgcttaaaa aagcaaaatt
     4561 tatcttaatg gcaacgatac tactatcagg atgttcaact accaataacg aatccaacaa
     4621 agaaacaaaa tctgtaccag aagaaatgga tgcttcaaaa tatgtaggac aaggattcca
     4681 accacctgca gaaaaagatg cgattgaatt tgcaaagaag cataaagata aaattgctaa
     4741 gcgaggcgaa caatttttta tggataactt cggtctaaaa gttaaagcta caaatgttat
     4801 aggtagtggc gatggtgtag aagtattcgt gcattgtgat gaccacgaca tcgtatttaa
     4861 tgcgagtatt ccatttgata aatcaattat tgacagtgat agctcattaa gaagtaagga
     4921 taaaggtgat gatatgagta ctttagttgg tgcagtactc agtgggtttg aatatcgagc
     4981 acaaaaagaa aaatatgata aattatataa atttttcaaa gataatgaag agaaatatca
     5041 atatacagga tttacaaaag aagcaattaa taagacgcaa aatagtggtt atgaaaatga
     5101 atatttttat atttcggcca taccttataa tttagctgag tatagagact attttgaacc
     5161 attgttaaac aaaagtgaca gtgaattttc aaaagaattg tcaaatgtta agaagcaatt
     5221 aaaagataag tctaaagttt cggtaactac tactctattt agtaaaaaaa agaactatac
     5281 taaaaaaagt aacagtgaaa atgtaataaa aatggcagaa gaaataaaaa aagataaaga
     5341 gataccaaac ggtatagagc ttagtataaa attttcggac aataaaataa atacggttaa
     5401 accaaatttt aacggtgaaa gcacttcaga atatggtgtg tttgatcaag aataaaatta
     5461 atgatgaaaa tttaacggag aatagtgtat attgagtaga tcaagaataa aaagataatt
     5521 ctactattgt tgtgaaggca aataagtaga agattttaag tgtaatttct ggtgatttaa
     5581 ataataatat aaatggaagt actgatataa aactttttaa cctactagat tcttataatt
     5641 tgctttccat tttatgacga tttttactca attgagtgat agaatcaaaa aagccatctc
     5701 aaaaattaat caagcaaaca acattccaaa caatgctcgc aaatcaccaa tgtatcactc
     5761 tccaattacg taactatgat ttaatttaag catagttatt gaggttttgt gatatatagt
     5821 ataaaattaa tgagaattaa atttaataat gtaaaattca tcttcggggt cgggtgtaat
     5881 tcccaaccgg cagtaaataa agcctgcgac ctgctagtat gtatcatatt agtggctgat
     5941 ctagtgagat tctagagccg acagtatagt ctggatggga gaagatggag gttttttgtt
     6001 gtgcaataat cctcctattc ttacgagatg aatggaagga gaaaattgaa tatgcaacaa
     6061 aataaacgtc ttatcacaat aagtatgttg agcgcgattg cgtttgtgtt aacttttatc
     6121 aagtttccta taccattttt gccaccatac ttaactttag attttagtga tgtaccgtca
     6181 ctactagcta catttacgtt tggaccagtt gccggtatcg tagttgcact ggttaaaaat
     6241 ttattgaact acttatttag tatgggcgat ccagttggac catttgctaa ctttttagca
     6301 ggcgcaagtt tcttattaac tgcttacgcc atctataaaa ataaacgttc aacaaaatct
     6361 ttgattactg gattaatcat tgcaacaatc gttatgacta tcgtgttgag tattttgaac
     6421 tatttcgttc tattaccttt gtacggtatg atatttaact tagctgatat cgcaaataat
     6481 cttaaagtaa tcattgtttc aggaattata ccattcaata ttattaaagg tatcgttatt
     6541 tctattgtat ttattttact atatagaagg cttgcgaatt tcttgaaaag aatttaatca
     6601 aattaaagca aaataatata cacataataa taaaaagcag gtgactatca ataaacgata
     6661 gcttgcctgc tttttctata gaacatttgt ctaaaaaatc aattattcaa attttaaagc
     6721 gtccccatca aatgattcgt ctgcaatttt aatagaatct gtagggcatc catcaattgc
     6781 atcttccata tcttcatata attcctcagg tacttctgca gtaccttggt tatcgtcaag
     6841 gattacgaaa gcaatacctt cgtcgtcgta atcatatata tctggcgctg ctgcaccgca
     6901 tgcaccacat gcaatacaag tatccatatc aacgattgta tattttgcca atgtcttcgc
     6961 ctcctttgat aaaaatgcta aaatagtaat gtgactaaaa ttttagacag catcattttt
     7021 attttcaaat tatccgtttt acagagtgag ggttaaattt gcaacacatt ataaaaacag
     7081 cattacaaca aacatttaac tataaaacaa ataaaagtat ttacaatatc ttagttggta
     7141 agaaatctca ccaaaccttt tttgacgctt gtagtcaaca acagttgtca ttatatcaca
     7201 gtttaccact attaaaatat ccgtcttttg agctattttt agaaaaaatc aatgaattta
     7261 atgctgaaat ggaaatcatg ttgcatccta gatatacatt tgaaagcatg gggcaaacat
     7321 ttcaagcaat tcaactatta gtgcaaacca tgtctaatac caaacaacat gtttttcatt
     7381 ttgtaccaat ctctcaaaat aataagatac aagaaactgt aaagattgtc tataactaca
     7441 ttaaagaaaa ccaattacaa attgattttg aaaatgaact acataacttg tttaaagcaa
     7501 taactttaaa agggccatgt tacttacatt attatttgca aggctatgat gaaccaatgt
     7561 atacgagaca gcaagttagt ttaatagaaa agctatctca acagcaattg tttgaatacg
     7621 aaatgaataa tttagtgaca atgatgtttg aattagaaag tggagaatat actattttat
     7681 caaaaataat aatgaaacct acattattaa atcaaactta tattacttat acaaaattgc
     7741 ttgaacaatt cacgatggaa gatatagcgg ctcaacaaca agttaaaatc aatactatcg
     7801 aagatcatgt acttgaaatc ttaatcaaag gttacatgtc taattacgat gattatgttg
     7861 aactagaaga tcaactccag tttttgaatt tttatcaaca gcatcgtggc gaacgattaa
     7921 aattttacaa agaacaattt gacacgttat catattttca attaaaagta ttaatcgttg
     7981 gatttgaaag aggtgatctg aatgttgcat gatattttac gaaacaaatt tggattcgag
     8041 agttttaaac cgggacaaca ggaaattata gaaagtataa tgtctcaaca acacactcta
     8101 ggtatacttc caactggaag tggaaagagt ttgtgttatc aaatacctac gtatttatca
     8161 ggtaagccga cattaattat ctcaccgtta atatctttaa tggatgacca agttatgcag
     8221 ttgaaaataa atggagaaaa acgtgtaaca tgtattcact ctggtatgga tgaaattgag
     8281 aaaaagcata atattaaatg tttacgacat agccgcttca tctttctaag tccagaattt
     8341 ctcctgcaac cgtcaaattt taaattaata tctatgatag actttggcat gattgttcta
     8401 gatgaagcac attgcctatc tgaatgggga tatgatttca gaccacatta tgctctaata
     8461 ggaaaagtaa caaagcattt taaagaagcg gttgtcttag cattgacagc aactgcacca
     8521 ccgcatttac aagatgattt gacggaaatg ttagcgattc aattcaatgt tattaaaact
     8581 acaatgaatc gcccaaatat aagctttaag catcttaatt ttcatgatga tgaagataaa
     8641 attgaatggt tgctgccgtt tctacaacag tcgggaccaa cgattattta tgtctcatcg
     8701 aaaaagatgt gtctgaattt agcgcaactt atttatgatt caggttttct tacaggtatt
     8761 tatcatggtg atatgaatta tcaagagcga cacacagttc aacaacaatt tttaaataat
     8821 gatattccga ttatagtcgc aacgagtgct tttggtatgg gaattaataa aaaagatatt
     8881 cgcacaatca ttcactttca tctttcaaca agtccttcta actacattca agaaattggc
     8941 cgtgcgggtc gcgatggtga actaagtcag gcaattagtt tattccaacc ggacgataaa
     9001 tatattttag aaacgttatt atttgcagat atgataacag aagaagatgt acaaaatttc
     9061 gaaataggag aatttttagc tcccgataaa caagccgttt tgacaacgtt gcaatcattc
     9121 tatagtatcg gcgccttgaa acagatattt aagcaatcat ttaaacgaaa gcaattagga
     9181 ttctttcgca tgattggcta ttgcaaattg gatcaatgta gacggaagta tttattagaa
     9241 tttttcggtg aatatccacc ggcacaagat cgatgttgtg acaatgattc taatataact
     9301 gatatcgcaa ttttaaataa gaagaaggta attagaagta ttggatttga tgaaaagttg
     9361 caaaatttat ttctcagata gtattacttt actaaaagaa aattgacaag ctataattag
     9421 tgtatacaca attgaaaaat gattgaaata attttgaaaa atatacataa acatatgtca
     9481 tgtgggtata ttttatgtaa aatcattgta atagaataga aaggaagatg gctatgtcta
     9541 ataattttaa agatgacttt gaaaaaaatc gtcaatcgat agacacaaat tcacatcaag
     9601 accatacgga agatgttgaa aaagaccaat cagaattaga acatcaggat acaatagaga
     9661 atacggagca acagtttccg ccaagaaatg cccaaagaag aaaaagacgc cgtgatttag
     9721 caacgaatca taataaacaa gttcacaatg aatcacaaac atctgaagac aatgttcaaa
     9781 atgaggctgg cacaatagat gatcgtcaag tcgaatcatc acacagtact gaaagtcaag
     9841 aacctagcca tcaagacagt acacctcaac atgaagagga atattataat aagaatgctt
     9901 ttgcaatgga taaatcacat ccagaaccaa tcgaagacaa tgataaacac gatactatta
     9961 aaaatgcaga aaataacact gagcattcaa cagtttctga taagagtgaa gctgaacaat
    10021 ctcagcaacc taaaccatat tttacaacag gtgctaacca atcagaaaca tcaaaaaatg
    10081 aacatgataa tgattctgta aaacaagatc aagatgaacc taaagaacat cataatggta
    10141 aaaaagcagc agctattggt gctggaacag caggtgttgc aggtgcagct ggtgcaatgg
    10201 ctgcttctaa agctaagaaa cattcaaatg acgctcaaaa caaaagtaat tctggcaagg
    10261 cgaataactc gactgaggat aaagcgtctc aagataagtc taaagatcat cataatggca
    10321 aaaaaggtgc agcgatcggt gctggaacag caggtttggc tggaggcgca gcaagtaaaa
    10381 gtgcttctgc cgcttcaaaa ccacatgcct ctaataatgc aagccaaaac catgatgaac
    10441 atgacaatca tgacagagat aaagaacgta aaaaaggtgg catggccaaa gtattgttac
    10501 cattaattgc agctgtacta attatcggtg cattagcgat atttggaggc atggcattaa
    10561 acaatcataa taatggtaca aaagaaaata aaatcgcgaa tacaaataaa aataatgctg
    10621 atgaaagtaa agacaaagac acatctaaag acgcttctaa agataaatca aaatctacag
    10681 acagtgataa atcaaaagag gatcaagaca aagcgactaa agatgaatct gataatgatc
    10741 aaaacaacgc taatcaagcg aacaatcaag cacaaaataa tcaaaatcaa caacaagcta
    10801 atcaaaatca acaacagcaa caacaacgtc aaggtggtgg ccaaagacat acagtgaatg
    10861 gtcaagaaaa cttataccgt atcgcaattc aatactacgg ttcaggttca ccggaaaatg
    10921 ttgaaaaaat tagacgtgcc aatggtttaa gtggtaacaa tattagaaac ggtcaacaaa
    10981 tcgttattcc ataatataac tatataaatt gtaactgaac tgctatatac aaacgtgcat
    11041 attataagta tctctaaata ttttggagaa cttaaattgc gcttataagt atgtagcggt
    11101 tttttcattt ttcaaagttt gttatttaac aaggtctttt ctcgaatatt ggcatatcaa
    11161 tttaactttt taaatagtca tcaaaaagat aaaacaccac aatcaacaaa tttaacgagg
    11221 aagaataaaa aataaatcaa catattaaat tgtagtgtta ttcaactccg tagctaacaa
    11281 ttctctatgc acattaaaca aattgtcaaa aatatatcat aaatcttcaa gcacagactt
    11341 agcgcatcaa tcactgaact gttataatag tttgggatta aaggaggccg aaacaatgca
    11401 aaaagttgaa agtatcataa ttggtggagg gccatgcgga ttaagtgcgg ctattgaaca
    11461 aaaaagaaaa ggtattgata ccttaattat tgaaaagggt aatgtcgttg aatcaatcta
    11521 caattatcct actcaccaaa catttttctc atcaagtgat aaattaagta ttggggacgt
    11581 accgtttatc gttgaagaaa gtaaaccaag acgtaatcaa gcgctagttt attaccgaga
    11641 agttgtaaaa catcatcaat taaaagtaaa tgcatttgaa gaagtattaa ctgttaaaaa
    11701 aatgaataat aaatttacta ttactacgac gaaagatgtt tatgaatgtc gatttttaac
    11761 aatcgcgaca ggctattatg gtcagcataa tacattagaa gttgaaggtg cggatttacc
    11821 taaagtgttc cattatttta aagaggcaca tccgtatttt gatcaagatg ttgtaattat
    11881 cggtggtaag aattcggcta tcgatgctgc tttggagttg gaaaaagctg gtgctaacgt
    11941 gacggttcta tatcgtggtg gagattattc gccttcaatt aaaccgtgga tacttccaaa
    12001 tttcacagca ttagtaaatc atgaaaaaat tgacatggaa tttaatgcta atgttaccca
    12061 aataactgaa gatactgtga cttatgaagt aaatggtgaa agtaaaacga tacacaatga
    12121 ttatgtattt gcgatgattg gttatcatcc cgattatgaa tttttaaaat ctgtaggcat
    12181 tcaaattaat acaaatgaat ttggaacagc gcctatgtat aataaagaaa catacgaaac
    12241 aaatatcgaa aattgctata ttgcaggtgt aattgctgca gggaacgatg cgaataccat
    12301 ttttattgaa aatggtaaat tccacggggg cattattgct caaagcatgc tagctaagaa
    12361 acaaacgccc ttagaatcat aaaaataaag gtctatgtac taaataactt agttttacaa
    12421 cgactgacat tcatgatatg tcaaatgagg ttgatgacta atgattgtac atagaccttt
    12481 ttatgttacg tattcattat aattcaaaat atgatttgat ttcagcttta tctaaattgt
    12541 tgcttaacgc gactaataat tttaatcttg cttttggacc attcaagccg ttagaaaaaa
    12601 taaaaccttg ttgtgcgagt tggtaaccac caccatcgta tgcgtaagtt ggactcacaa
    12661 taccattaaa ggaacgtgaa actagcacaa taggtatatt taaagatact aattgttgaa
    12721 tgccttctaa tgcgcttgga ggtatgttgc cttgtcctaa cgcttcaata accataccat
    12781 cgataccttc tcgactataa aaactaaaaa tgtcacctgg catacccata tatgctttta
    12841 ctaatggtac atttagtttg tcattgacat tttccaatgc ttgttggcga tatggcatat
    12901 gatggaattg cacacgatcc tttgtcaata cacctagcgg accatgattt ggactttgaa
    12961 atgtgtttgt attagacgta tgtgttttgg taacattacg cgccgtatga atttcatcat
    13021 taaatacaac catcacgcct ttatgacggg ccttttcatc agaggcaacg cgaatagcgg
    13081 aaatataatt atataatccg tcagaaccaa tttcattaga cgagcgcatt gcgccagtaa
    13141 taacaacagg ttgctcgata cctaatatta aatcaagtaa aaaggcagtt tcttctaacg
    13201 tatcggtacc atgcgtgata acgaaaccat cataatattt atttgttact gcttctaaaa
    13261 taatatcctt taattgttta acatgttgga ttgtcatatg aggtgatggt acattaaaag
    13321 gatttaattc atctatttgt gcatattgat ttatgacatc ttgatgcatt gaaatagggt
    13381 tgatatcatt tgttactact ttattagatt ggtcttgtga catactaatg gtgccaccag
    13441 tatgaataac aagtagatgt ttcatatatt tcctcctata tttaatttac ctaattatga
    13501 taaaatatta ttcataaaac gacaaggaag ggaaatgacg catgaaagcc attaatattg
    13561 cattagatgg tccagctgct gccggaaaaa gtacaattgc gaaacgtgta gccagcgaac
    13621 tatcaatgat ttatgtcgat acaggagcaa tgtatcgtgc attaacatac aaatatttaa
    13681 aattaaacaa aactgaggac tttgcaaaac tagttgacca aacaacatta gatttaactt
    13741 ataaagcaga taaaggtcaa tgtgtcattt tagataacga agatgtaaca gactttttaa
    13801 gaaataatga tgtgacgcaa catgtttcat acgttgcatc taaagagcca gtacgttcat
    13861 tcgccgttaa aaaacaaaaa gagttagctg cagaaaaagg tatcgtaatg gatggtcgcg
    13921 atatcggaac tgtagtgcta ccagatgcag atttaaaagt atatatgatt gcatcagttg
    13981 aagagcgagc agaaagaaga tataaagata atcaattaag aggtatcgaa tcaaattttg
    14041 aagatttaaa acgtgatatt gaagctcgtg atcaatatga catgaaccgt gaaatatcac
    14101 cattaagaaa agcagatgat gcagtgacat tagatacgac aggcaagtcg attgaagaag
    14161 ttactgacga aattttagcg atggtgagtc aaattaaata atctaataag tcataactat
    14221 ctatttgtaa tgtgcaacgc ttaacgcata tacaaaatga atgtgctgat aatgatttac
    14281 tcaaattaaa aggtgatttt tattcaatga tgaatgaaag ttgccttttt atttttggta
    14341 aaagttaatg cgtcagtgaa ttgtgtaagt ttttcaaaaa gtaaaaagaa ataataaagg
    14401 tgaattatta gaattccaaa aataattcat tacattcata aagcatttta caaatggtaa
    14461 gaaaatgagt gttacaaatc taaatattgc aaaagaagct gatttagtca caaaaaatgt
    14521 cctatgtaat aattcgagaa agatgcacta tatacggtct tcttactatt caaatgtaaa
    14581 agttgcttat ttgcgtggct ttttgtttta
//
LOCUS       DAMQWL010000062        14408 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.062, whole genome shotgun sequence.
ACCESSION   DAMQWL010000062 DAMQWL010000000
VERSION     DAMQWL010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 14408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14408
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.062"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..240)
                     /locus_tag="PF788_001671"
     CDS             complement(<1..240)
                     /locus_tag="PF788_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303932.1"
                     /translation="MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKD
                     QDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIIN"
     gene            complement(402..908)
                     /locus_tag="PF788_001672"
     CDS             complement(402..908)
                     /locus_tag="PF788_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303933.1"
                     /translation="MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQ
                     SLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTH
                     ISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIK
                     LYRIDLEK"
     gene            complement(1044..1844)
                     /locus_tag="PF788_001673"
     CDS             complement(1044..1844)
                     /locus_tag="PF788_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6303934.1"
                     /translation="MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELA
                     KSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADI
                     SVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRK
                     MNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLE
                     AKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV"
     gene            complement(1828..2547)
                     /locus_tag="PF788_001674"
     CDS             complement(1828..2547)
                     /locus_tag="PF788_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDG6303935.1"
                     /translation="MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQL
                     ADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTL
                     YTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFED
                     MIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVE
                     ELLTILPIKNDNKGENYGSIY"
     gene            complement(2602..3552)
                     /locus_tag="PF788_001675"
     CDS             complement(2602..3552)
                     /locus_tag="PF788_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDG6303936.1"
                     /translation="MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLP
                     RLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPV
                     FSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTI
                     ANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLIT
                     YIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVM
                     ADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH"
     gene            complement(3700..4587)
                     /locus_tag="PF788_001676"
     CDS             complement(3700..4587)
                     /locus_tag="PF788_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015581799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDG6303937.1"
                     /translation="MKKSLIAFILIFMLVLSGCGMKDNDKQGSNDNGSSKSPYHRIVS
                     LMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILA
                     HESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEET
                     KDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGW
                     NPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSR
                     PGPRIDEGLKELRDAIYRK"
     gene            complement(4966..5601)
                     /locus_tag="PF788_001677"
     CDS             complement(4966..5601)
                     /locus_tag="PF788_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HDG6303938.1"
                     /translation="MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNA
                     EIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQ
                     EINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKN
                     YDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK"
     gene            complement(5989..7650)
                     /locus_tag="PF788_001678"
     CDS             complement(5989..7650)
                     /locus_tag="PF788_001678"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDG6303939.1"
                     /translation="MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDY
                     ATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAII
                     PEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYN
                     VTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHP
                     EIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAK
                     MKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILI
                     DLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLR
                     EIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAK
                     EQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFH
                     KFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM"
     gene            complement(7647..8063)
                     /locus_tag="PF788_001679"
     CDS             complement(7647..8063)
                     /locus_tag="PF788_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000359087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 domain-containing protein"
                     /protein_id="HDG6303940.1"
                     /translation="MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQI
                     EDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILH
                     FVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE"
     gene            complement(8156..8263)
                     /locus_tag="PF788_001680"
     CDS             complement(8156..8263)
                     /locus_tag="PF788_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303941.1"
                     /translation="MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN"
     gene            complement(8338..9348)
                     /gene="adhP"
                     /locus_tag="PF788_001681"
     CDS             complement(8338..9348)
                     /gene="adhP"
                     /locus_tag="PF788_001681"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HDG6303942.1"
                     /translation="MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVK
                     NADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETL
                     CRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVK
                     PGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDP
                     VAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVL
                     DGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVI
                     KF"
     gene            complement(9847..10368)
                     /locus_tag="PF788_001682"
     CDS             complement(9847..10368)
                     /locus_tag="PF788_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwhD family protein"
                     /protein_id="HDG6303943.1"
                     /translation="MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFID
                     VANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAG
                     LTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGM
                     WKHSSDALHQAFN"
     gene            complement(10396..11691)
                     /locus_tag="PF788_001683"
     CDS             complement(10396..11691)
                     /locus_tag="PF788_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDG6303944.1"
                     /translation="MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLR
                     RIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALL
                     HDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHH
                     NKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMH
                     AVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFE
                     ETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISE
                     LQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIH
                     SITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN"
     gene            complement(11731..12207)
                     /locus_tag="PF788_001684"
     CDS             complement(11731..12207)
                     /locus_tag="PF788_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6303945.1"
                     /translation="MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASY
                     NEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNE
                     GLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF"
     gene            complement(12376..12912)
                     /locus_tag="PF788_001685"
     CDS             complement(12376..12912)
                     /locus_tag="PF788_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin family protein"
                     /protein_id="HDG6303946.1"
                     /translation="MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDV
                     RHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRY
                     PNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDI
                     MKDNYALARATEWNSILQ"
     gene            complement(13123..14061)
                     /locus_tag="PF788_001686"
     CDS             complement(13123..14061)
                     /locus_tag="PF788_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDG6303947.1"
                     /translation="MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQ
                     AINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQP
                     EYLKQQVENSLKRLQTDYIDLYYIHFPDNNTPKDQAVAALQELKEQGKIKAIGVSNFT
                     LDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDE
                     NTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVII
                     PGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED"
BASE COUNT         4538 a         2734 c         1871 g         5265 t
ORIGIN      
        1 gtttataata aagaaaataa ctggattcat ttgtaaagca aacaaattcc tttgaatcat
       61 taatatgatt tgtgctggag attttctttt atattcaata taatcttgat ctttcttttc
      121 agaatttttt atatcagtaa ttactttctc tttaatatca tcaatcaaat gcggtgataa
      181 acctttatga ttaaagtaat cttctatatt ttctagtaaa attttatcgt taatacgcat
      241 tggtagtact cctttaaaat gaaacatctt tatttattgt attggtttaa tttccccttc
      301 gcaaatcata aaaattaata ttcactgtat tatgccatgt aataaaataa ccgacaagta
      361 ttgcgattta acttgtcggt taagcacgat taatttaatt attatttttc caaatcaata
      421 cgatataatt ttatgttttt atcttttggt gctgaggcaa attgataagt cgttttgcct
      481 ttttcaatat atccaaaatt accagcaact ttgctatatt ccgtatgtgt tactgctttg
      541 ccaacataat ttttaacagc ttgatatgtt ggaccattag catcattata catcattgaa
      601 atatgagtta ctttaccatt gtttttctta ccatcagtag ttactaataa catacctttt
      661 ttagtatgga attcgtaata atgttcagtt ccatcttcat tgtaagaata catcggattt
      721 ttgtacttag ttaaaacatc tttaatagat tcgccaattt tcacattttc taatgactga
      781 tcacccttaa ttaattgttt aacagtatca atagagttgc cacttgctgc ttcggcacta
      841 gtgttcacta agcctactcc cattacaaca gaacatgcaa ttatacttgc cgttagtagc
      901 tttttcataa gcactctctc cttttattta tatcgtcttg tgctcacaac cattatacaa
      961 caatcatttc taaaacaaca gtcatattac aattatatta caaataataa ttactacttt
     1021 tatatttcac ttatcactaa aaattaaaca tgcttttcat cgtgatgttt gttgataaat
     1081 gcagctgtat cttcgacgaa tctttcttgc tcttcaacaa atgggaatgc acttgattct
     1141 tgatatactt caaagtccgc attttggatt aaatcagcta cttctttagc ttctaatctt
     1201 gttgttcttt caccgaattc tcctgcaata atttttgtcg gtactacgac atttctataa
     1261 gtttgagaaa tatcagcgtt tttgaatacc tctttaactg cttgaatttc ttctttagtt
     1321 gatatttcat ttgtatctac gacatgtttg aggaatcgat tcatttttct cggacgataa
     1381 tacttacgct tatttaaaaa tttatcttgt ttttcaggat cccagtttcg aataatatgg
     1441 gcatattttc taaataaacg ttcttccggt aattcacctt caatagatgt tggatttacc
     1501 aacgtaagtg atgatgtaaa ttcaggataa cgtactgaaa tatccgcacc aatgattcca
     1561 cccatttcat ggcatacaaa tgcaacttct tcaatatata aatatttaag taattcaaca
     1621 atgtcatcag aaaaatcttt tatttcaatg tgacgaggtt tatcagaata gccatgtcca
     1681 cgtaaatcaa ttaacacaac ttgaaatgat tttgctaatt ctgctgctaa tttattaaac
     1741 acagaataat tatcaagtac agtatgaatc aatacgatag gatagccttc acctaatgta
     1801 ctgtaatgta tcgatgttcc atcttttcta gtaaatagat ccataatttt ctcctttatt
     1861 atcatttttt attggtaaaa tggttaataa ttcttccact gttgtaattg taaaatcaac
     1921 ttcttcttcg agtggttcaa tttcagcatc ttcttgttta taccatacac taaccatgcc
     1981 catagctcgt gctggagcta catcatttaa cgcatcatcg ccaacataca taatttgctc
     2041 aggtaatacc cctagttgat caatcatatc ttcaaaaatt ttaggatgtg gtttacgaaa
     2101 accaactgtt tctgatgttg ataaataatt aataacatgc atcaaaccaa gtgaatgtaa
     2161 tcgaaattgt ttaatcttag atttaccatt tgcgataaca ccaatttgaa agcctttttg
     2221 cgatagcttt tctagtgtat acaaagtatc gtaataagga aatacataac gataaaaatg
     2281 catttcaaaa tcattaaata agtctttcca agttaaccta tctacatgga aacgtttaat
     2341 gatttcttta tataaatcag gtttatcatt atcttcatcg tcatctagct caataaatgc
     2401 ttttttaaaa tctgccagtt gaacatgaat taagtagtca tgaaatcgtt catattgctc
     2461 ttcgataaat ttctctcgag atttaactct gtccaacaac gtaccttcta aatcaaatac
     2521 aactgcttta atttgattca aatccatcgc ttatgccctc tttatgttta tagttatttt
     2581 tattttagca aatgtcgtgt gctagtgtaa ccgtttcgac tgagatatta gcatgtaaaa
     2641 taacactggt ataccaatta atgcaatgat aatacttgcc ggtatttgta ctggtgacaa
     2701 tatatggcta ccaataaaat ctgccataac cattatttgt cctccagtta caatatttaa
     2761 agccaattgt cttcctaatg attgtttcca ctgccatttt ctaatgagtt gcggtatcac
     2821 cataccaatg aatccaatga tgccaacata tgcgacattt atcgccgtta tcatagaagc
     2881 tatacataac gcgatatatg taatcaattg aacatttaag cctagtgact gactttttag
     2941 ttctcctaat tgcaataact ttagttgatt aagaatgata aatataccaa acaatgcaat
     3001 gataaatgtg attgctatta tagatacatt tgagtattct gcatcaccaa aaccaccaaa
     3061 cagataattg gcaattgtat ttaatttgcg aggttttaat aaaatcaaaa aatatagaag
     3121 tgaattgaat aacgcaccaa tcattaaacc acttaatatt aagattctaa ctggatagcc
     3181 ttggctcaat accgacgtaa tgactaatac agttattaat gttatcaaac taaatgttat
     3241 tgaaaataca ggaatccata acgttgttaa acctaaaaat aatgctaatc ctgaaccaaa
     3301 tgtagcgccg cttgccaatc ctaatgtaaa gctatctgcc aatgcattat ttaaaactgt
     3361 ttgaaatata aggcctgcaa cagttaatat catacctgtc aacaatgctt ctaataatct
     3421 cggtaatcta acattgatta aaatagactg gttaaataca tcattgatat cgcccaactg
     3481 ccaaaataga tatatgctag ttgttataat caatatgact atccagctca ataatacttt
     3541 attaaatgtc atagcattct cttttctttc atcgataatt acattcatta tagcaatcac
     3601 atactcgcgt tgctatcatt cactaaatat attttaaaaa ccccttatct caaacatgta
     3661 ttttttacat gtagcaataa ggggcataat tagaatggtt tattttctat aaattgcatc
     3721 tcttaattct tttaatcctt catcaatacg tggacctggt cttgatactt catcaccatt
     3781 tacaacttca atacgtgtat tcttgacagc attaatttta ttgaatccac ctcttttttt
     3841 gatgatatcc atataatctg atcttgtctt agcttccgtc gaaattaata tatctgggtt
     3901 ctttttaata atactttcct tcgttacagg gttccaacca ttaatgtcac tatacacatt
     3961 ttgggcttct aatttttcta acatatcatt aaaaaatgta tgcttccctg ctgtatatat
     4021 ttcaggcttt gatgaaacct caataaatac ttttgatttt ttatgatgag caggaattga
     4081 atctatgact ttatcgatat tatctttagt ttcctcaaca agttgttcag cctgcttatc
     4141 atgatgcgtt aatttcccaa tttgcttaaa tgtgttgtaa gtttcatcaa ttgattgtgc
     4201 atctttaaca tacactactt tgatgccttg tttctctaat gatgacaata ctttattagc
     4261 agttgccttt tgcgactcat gcgcaagaat tagatctggc tttgccttta aaagttcctc
     4321 tttatttaga ttcaaagcat caaattgttt cttacccttt ttcacatctt ttggataatc
     4381 atcaaccgtt gaaacaccaa ctatgtattt acctaatcct aattcatata aaatttcagt
     4441 attactaggc attaacgaaa caattctatg gtacggcgat ttagacgagc cattatcatt
     4501 gctaccttgt ttatcattat ctttcatacc acagccactc aggacaagca taaaaatcaa
     4561 aataaaagca attaacgatt tcttcacact atcacatctc ctttttaatc ccacttttcg
     4621 ctttagcgat tagagggatt tatgcagttg tgcggtagca tccaactgcg ttcctcttca
     4681 tctttagcga ttagaggctt ttatgcagtt gtgccttagc atccaactgc gttcctcttc
     4741 acctttagtg attagaggct tttatgcagt tgctgcacaa acaactgtat tcctttactc
     4801 cccttgagct ttagcgatta ggggctctta tgcagttgct gcacaaacaa acaactgttt
     4861 ttttctttat atgcttctat ttattatata agtccacata ctaaaagaaa atagtaaatt
     4921 attttttata tttcatataa actcatctat ctaacttcac agcgtttact ttttaaagta
     4981 aggttctaaa aaatcataat tctttatatc tttgtctcta aagtaatgtt taccaaatac
     5041 atctaacaga gcatgaaatt cattagcatc ttgatttgta aaatgatttg gtaatgtgac
     5101 tacttttttt aattgatcat aatttttagt gttttcatat cctaatttat catatatttt
     5161 tcttgtatag ctatctggaa taaattcaat acgtccgaat atataaacaa gtaagacatc
     5221 tgctgtttca cttccaatac ctttcaaaga taataattct tttcttaatc cacctttata
     5281 tcgctcatta atctcttgat aattgaaatg atgtcgtgct aaccatgtta ataatgtttt
     5341 aatcgtcagt gatttacttt tataaaagcc acttgaatgt atcaatgatt gtaacgtttc
     5401 aataggtagt tctaatatat gatttggatt aaaatgcgta tgttctttaa tctgattcaa
     5461 tgcaatttct gcatttcgcc atctagtatt ttgaactaaa attgcaccta acatcatttc
     5521 aatgtcatta tcagcaggcc accaaaattg tggtccgaga tgttcatata aaactttata
     5581 taattcatca gttcctaaca tttacaccct ccattttaga gggagtggga cagaaatgat
     5641 attatcgtaa aatttatttc gtcgtcccac cccaacttgc attgtctgta gaaattggga
     5701 atccaatttc tctttgttgg ggccccgccg gcaaggttga ctagaattga aaaaagcttg
     5761 ttacaagcga attttcgttc agtcaactac tgccattata actttgtaga gcatagaaca
     5821 ttgatttatg tctcaggctc tcttatgcag ttgtgcagag catccaactg tgttcctctt
     5881 aaccttattc acatactaag cattccccaa tatgtcacat acctaaaaaa acactccaac
     5941 acaaagtatc tttcgagaaa ctctacgttg gagtgtatat aaatgttctt acattgattc
     6001 aggtgcgctt acaccgacca ttgccaatgc atttttcaat gtaattctga ccgcttcaat
     6061 catagcaaca tgtgcttttg ttttttcaat atcatctgtt aacacttttt cagcattata
     6121 gaatttatgg aaatgagaag ctaaatcttg aatataatta gtaattctat gtgccgatct
     6181 atgctcagca gcactttcaa ttgtaggttc gaaatcagct acttttttca acaattcaat
     6241 cgctttttca ttagtaatcg ttgtaaaatc attcgcagca gtcacttcaa taccttgctc
     6301 tttcgcttgt tttaaaattg aacaaatacg cgcatgtgca tattgagcat agtaaactgg
     6361 attgtcttga gattgctctt tcgctaattc catatcaaaa tcaaagtgac tatcaggact
     6421 acgcatagtt aagaaataac gtgcagcgtc aacgccaact tcgtccataa tttctcttaa
     6481 tgtaatcgca ttaccagtac gtttactcat cttcacttct ttaccatttt ccattaaacg
     6541 aaccatttgc atgatttgaa tttctaaacg attactatct acaccaaacg tttcaagaga
     6601 tgctttcaaa cgattaatat aaccatgatg atcagcacca aataaatcga ttaaaatgtc
     6661 attaccacgt tttactttat cgaagtggta cgcaatatct ggtaagaaat acgtatatgt
     6721 accgtcattt ttaattaata ctctgtcttt gtcgtcttta aaatcagttg tacgtaacca
     6781 tgtagcgcca tcagcttcat acgtataacc taattctttc atttttgcta aaacttcaag
     6841 aatttctcct ttttcatata aagatgtttc actaaaccaa ttatcaaaat gcgtattgaa
     6901 ctctgctaaa tcatttttca atttagccat ttcgtattct acgcctaatt ttctaaattc
     6961 tttcaaacgt gcttcttcag aataatcttt aatttcaggg tgtttctctg ctaaatcttt
     7021 acctatttca ataatatctt ttccattata gccatcttct ggcattgaat aactattgtc
     7081 acctaaagct tcaaagaaac gtgtttcaat cgaacgcgct aagttagtaa tttgattacc
     7141 agcatcatta atataatatt cacgtgttac attatagcca gctgcagtta aaatattagc
     7201 taaagcatca ccaactgctg catttctagc atgaccaata tgtaaatctc ctgtagggtt
     7261 agctgaaaca tactcaagca atacattttg accttttgat tcatttacat gtccaaattg
     7321 atcacctttt tcaattgctt caggaataat tgctgttaaa tactgattat ctaagtaaaa
     7381 attaatgaat cctggaccag caatgtcaat ttgttttaca tgtgcttttt cagtatctaa
     7441 gttatcaaca atcgcttgag caatttcacg aggattacgc tttgcaatct tagtcagtac
     7501 catcgcaata ttagtagcat aatctccatt ttttgtatct ttaggaactt caattttaat
     7561 atcaggaatc tcatctgcta atcctgcttt gttaatactt gctgcaattt cttctactaa
     7621 tgtttgtttc acttgatcaa taatattcat tcgcctatct ccttatagtt aatttcatat
     7681 tgataagaac ccattttttc attatcttga tataattcat aatgaatctt tagcttgcca
     7741 ccgtctccac ttacgaaatg taaaatgcgt aatgttttaa cttctagtgg aattcgtcca
     7801 gccgatatat cgtaaaaagt tgttgtcgtt tgtccttcaa caaaatgcaa attcatatta
     7861 atgtcgcctt tacgaatcaa cttaacgcta tcatcatcca cttttattgt aacattaact
     7921 gttgcatcct caatttgttc tacataccga ataaagttag attgcctttg ttgccaagtt
     7981 ccttcagtag taaattcaaa tttttctttt tcgttgtgct gtttcaacac ttgctttgtt
     8041 tgaatactta cttttttatc caatttacta ctcaccttaa tcttcgcata atagaaatat
     8101 tatagcataa aataaggtca tcttgttatg ccttcttaaa gctaaatagg ttcaattaat
     8161 taacaattcc atacttaatc aacgcttcat atatgtaagc cattttataa aatacaaaca
     8221 acacctcaaa accaaaaaac acgagatttt cactatcttt catgaaaacc tcgtgtttga
     8281 ttataatgat agtgttcaga gcactacctt ctttatctat atagtcagtt gatattttta
     8341 aaatttaata accattctac cagttatagt accattttcc atttcttcaa aaatatcatt
     8401 gatttcttct aattttctta attgaacttt aggtgttact ttattttcag cagcaaattc
     8461 aaacgcttca cgtaagtctt gtcttgtacc aacaagtgaa cctactactt caataccatc
     8521 aagcactaat cttgggatat ctaagttcat tttatcaaca ggtaaaccaa cggcaacaac
     8581 tcttgcacca gcttttacaa catcaaccgc ttggttaaat ggcgtcttag caactgaagt
     8641 taccactgtt gcatctaatc ctttgttatc agttaatttc ataacttctg caactggatc
     8701 aacatcttta gaattaataa tagcatcagc acctaattct ttcgcgaatg ctaatttatc
     8761 atcattgatg tcgaaggcaa caattttagc ccccataacg tttttagcat attgtaaagc
     8821 taggttacct aaaccaccta taccaaaaac acctaaccat tgtccaggtt ttacattact
     8881 tacttttaca gctttataag ttgtcacacc tgcgcatgta atagaagacg ctgctgctgg
     8941 atctaatttt tcaggtactt tcacagcata gtctgcagta acaataactt gttcagccat
     9001 tgcaccatct actgtataac cagcattttt cacactacgg caaagtgttt cacgacctgt
     9061 tgtacaatat tcacatcttc cacagctttc gaacatccaa gcgatagaca cacggtctcc
     9121 aatttttaat gattctacat cttccgcaac ttcgatgact ttaccaatac cttcatgacc
     9181 taaagtaacg cctgtaacat caccaaaatc agcattctta acatgtaaat cggtatgaca
     9241 aacgccacaa tattccgttt gtaccaacgc ttcaccaggt tttaaagctc ttaacttttt
     9301 gtcctcaata cttactttgt gatctttcgt tacaactgct gctctcataa taatgtcctc
     9361 cttatagtca ctccagtatg tatgatatta attggctatt actttcaaaa aagaaaacga
     9421 ataattatag atgtaatttt tatttgtaat agacgccaga ttaaaacata ctactgtgac
     9481 cttgttttta gttagatatc aaccgttaac ttttaacgtt tccctagtta atatgttaaa
     9541 agaaatgaca taatcgatat gctaacgtgt aatttttact tcacatatat ttatttaaag
     9601 ataatttata atactcttat cttcactctt attataatgt gaattaattc acaaagtata
     9661 tagctatgat caaaaaaatg tgtcagttat tcaaattttt tattaactac agattaattt
     9721 aatttcaaaa aaattaaaaa aactcccaat caatctaaga cattattttc acctcacgat
     9781 ttacgtcgtc attgagaaat gaatcatatc tttatagatt aattgggaaa ttttagtttc
     9841 taatatttaa ttaaatgctt gatgtaaagc atcagaagaa tgcttccaca taccttcatc
     9901 atggttcatt aaaaagtctt ttaaaatagc tttattctcg tcaccaattt gatctatgat
     9961 aatatgatgt ttcattgatt tatccatcat attaacatgt tcaggcatac ttttataacc
    10021 acgacgaatt gctttattca ctaataaata gcacgctgtt aaaccagcgt aatatggtcc
    10081 ttgttcatta cgttctgttg ttacccaaca caaccaatat tctttagctt catcgccttc
    10141 aacagcagct ttatcagtaa tccatttcac acctttttca actttggcac gagcatgcat
    10201 gcctccaata tcaataaatg cttctttgtt agcaacatcg ataaaaactg gtgcaatatt
    10261 gtctaagcta attgaaccaa tatttgtacc tttatgacca tctagagggt cattttttat
    10321 gatattaaaa ttaaagcctt ttttctcaga caatgatata acctccatat ttaacgataa
    10381 caattttagc cctgtttaat taagctcatt aatcaaattt tcaatagctt ctctaattgt
    10441 cttatcttta atctttgcaa ccatttctct aggataatat aatttatagt cttggcgatt
    10501 aatgcctgta atactatgaa tgactaatga ttgattgctt atttctctaa tcgtaccatc
    10561 ttgtcttaat aaatgaatcg gtttgcgatt tgaccccggt cgatcatagt catatggcaa
    10621 atcagaaaat gcttcactca caaaataata atctggatta ataccacctg cttcaaacag
    10681 ttcttgcagt tctgatattg taataattga gccatcaaat ggaatatatt taaataagtc
    10741 tcgattaata aatcgacttg ctaaatcact taaaatagca tcatcttctt ttgtccattt
    10801 ttccaaataa tacgtaacta ccgcttcatc gagttcaaca tattgttcaa tcgtaactgt
    10861 ctcttcaaaa aatggaataa aatcatgtgg atgcaactta aattcatagc cttcattata
    10921 aagctgtttt gcgcgtttca aacaattatt aagcagcact tctccaccac gactaactgg
    10981 gtggaagtaa atttgccaat acatttgata acgactcata ataaagtttt caactgcatg
    11041 cataccactt tctttgatta gtacttcatc tttagaaggt cgcattaatc ttaaaatacg
    11101 ctccatatca aaagcaccat atgatacacc tgtgaaatac gcatcacgtt gtaaataatc
    11161 cattctatcc gcatcgattt gtgacgaaat catcgaaatg accaatttat tatgatgcgt
    11221 tttattaatt acttccgcaa cttctcttgg aaactcaggc gccactttac gtaatacagc
    11281 attcacctca gtatctccag taataatcgc ttgtgtgtat gcttcatggt ctgtattaaa
    11341 tattttttca aaactatgtg aaaatggacc atgtcctaaa tcatgtaata atgcagcaca
    11401 taatgccaac ggtctatctt tattgtccca tgcatcatga ccaataaatg actcatcaat
    11461 taatcgtcta actatttcat acacacctaa agaatgtcca aagcgactat gttctgctgt
    11521 gtgaaaagat aggtacagtg ttcctagttg tctaattcga cgtaaccttt ggaattcctt
    11581 agttttaatt aaatcccata tcaattgatc ttcaacatga atatatcgat gtatcgggtc
    11641 tttaaaaact ttttcttcta ctaattttaa atctacatat gcgttagtca ttattcccct
    11701 ccttttcgtt taatataata tttaatttac ttaaaatgct ttgtacataa gtgctaagtc
    11761 taacttttcg ccatacattt ctggctcata agagcgtaag attgtaaaac cttgctcttt
    11821 atagtaagct actgcttctt catttttatt atctacttct aagtaaacac cttcaaattt
    11881 atcttcaaaa cgtgataatc cttcatttaa caatgctgta ccataacctg tatgttgcga
    11941 ttctggttta acataatgag ctgataaata taattcttca ccgtaaataa agttagcaaa
    12001 gccaacgatg tcattacctt cttcaacgac taagaataat tgttcttgaa gtcttttctt
    12061 taaatgatgt tcattatatg aagcttctaa caagtgatta actgttgtcg cagcgtatat
    12121 atttaagtat gtattaaacc aagctttagt tgcgacatct ctaatttgaa caacatcttt
    12181 ttcagttgct tgtcttacct tgaacatgac tttctcccct tattaacaag ttttaataac
    12241 ggcattatac cacaacttgc tcaatactta ataaacaatg attgtctatt caatttatat
    12301 atttatattt tccgttaaaa ttaaaaataa aaaataacga agcaaaaaat cacttcgttt
    12361 agtatgaggt atgtcttatt gcaatatact attccactca gttgcacgtg ctaaggcata
    12421 gttgtctttc atgatgtcac caggcttttc agcagttcca ataatataac catttaaagt
    12481 ggcacctaaa aagtctaaac tatatttcat ttgcgtaatt gctggcttcg cttttatttt
    12541 tggacaatct ccaccaacta aaataactct aaaatccttt tcggccattt gtgccttaaa
    12601 attaggatat cgtttatctt gtaatgtttc tgaccaatgt tcgataaatg ctttcaatgg
    12661 tgctgaaatg ctataccaat acactggtga tgcaaaaata attgtatcac tagccaatat
    12721 tttatctaga atcggcaaat agtcatcgtc atatgaagta atagtctctg ctgtatgtct
    12781 cacgtcacgt atcggtttaa actgatgttg tgtcacgtca atccattgat actctaaatc
    12841 ttgcaaagcg aattttgtta attgtgcagt attaccgttt ggtctactcc caccaaacaa
    12901 aacagtaatc attttagcct aacctcactt ttgattaata aatatctgtg tttttcgtta
    12961 cctaattata ctatcataag ctttgcctac cgaatagtaa aacgcttaca acttttatat
    13021 aaatttgacg aaatttcgtc atgccttata taacgtcgtt tgtgatacgg ggctaattca
    13081 tgatgaaatt agatacatat atcaccatta aatacaattc atttagtctt caatcggaaa
    13141 cagttcatcg atatattgaa tctcatcatc tgataaaacg atatctgcag ctttaatatt
    13201 ttcaacgact tgttctgcac gttttgcacc aggaataatc acatcgatag ctggtctcgt
    13261 taaataaaat gctaatacaa tgttcgcaat tgaagtttga tgtgctgcag ctatgctttc
    13321 caaagctttt acgcgacgca cattttcttc aaatacacct ggtttaaaat cacgacgtgt
    13381 agtacgatgg tcactaaatt tagtgttctc atcatatttt ccagctaaaa taccggatgc
    13441 taatgggaaa tatggaataa atgtgatttg gtgatcaaca caatattgta atactgcctc
    13501 attttcgcga tgcaataaat tatattctaa ctgtacaaca tcaacgtaac catctttatt
    13561 tgcttcttta agttgatcta atgtgaaatt tgatacacca attgctttaa tcttcccttg
    13621 ttccttaagc tcttgtaatg ctgcaactgc ttgatctttc ggagtgttgt tatccggaaa
    13681 atgaatataa tataaatcga tataatcagt ttgtagacgt ttcaaactat tctcaacttg
    13741 ttgttttaaa tattccggtt gattgttctg atgtacttct tgattttcat caaattcatg
    13801 agaccctttc gtagcaattt taatttgctc tcgcggatat tctttaacaa cttctccaac
    13861 caattcttct gatcgttctg gcccataaat atatgccgta tctaataaat taataccatg
    13921 attaatggct tgacgaacaa catcttttcc ttgttcttca tctaagttcg gatataaatt
    13981 atgcccacct actgcgttcg tcccaagtgc gattggaaac acttcaacat cagatttacc
    14041 taagtttaca aattgcttca ttagacccag ctccttatct ttataacttt tccactatca
    14101 cactatcatg atttaataca acttccaaat gttagaatta gagcttgaat ttaagcggtg
    14161 taataggaaa acgttatata aaactcagtt aaaataagta ttgcttaaat tgatatgcat
    14221 atagcgcgat tgctcgttga cctttaaatt acatgtactt ttgaatcaga aattgaaaaa
    14281 catttaagaa cgacaatatt aaagccattg caaatttaat ttggtaattt ctattggttt
    14341 ttaagtatga catgaatgtt tttatctata attaaagcta tattaactag aaaaaaaccc
    14401 attataac
//
LOCUS       DAMQWL010000063        14082 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.063, whole genome shotgun sequence.
ACCESSION   DAMQWL010000063 DAMQWL010000000
VERSION     DAMQWL010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 14082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14082
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.063"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..402
                     /locus_tag="PF788_001687"
     CDS             <1..402
                     /locus_tag="PF788_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDG6303948.1"
                     /translation="VFLLIFTMTDITSLMLDCRLIIIYCIVSLSLSMIYPVAFIIISM
                     TTHIFYFLFRAYIGYGDVLLISALSLFFPLQFTIYVILFTFVIAGLVALITMIFKPIK
                     LLPLVPFIFISFFINSLFYNDIHQFLGGVYF"
     gene            399..1085
                     /gene="radC"
                     /locus_tag="PF788_001688"
     CDS             399..1085
                     /gene="radC"
                     /locus_tag="PF788_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000692885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDG6303949.1"
                     /translation="MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSI
                     DISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIK
                     ITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
                     AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSL
                     VEAGYFDEND"
     gene            1153..1437
                     /locus_tag="PF788_001689"
     CDS             1153..1437
                     /locus_tag="PF788_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303950.1"
                     /translation="MTLFIIIGVLVPMVYTMQLNIKNEPVTKRNLLITLALSTLGILV
                     TALAGVIVTKQAFPLLSVAIGSIFTGIVWGLLLSGSYALIRFLSNAFGRK"
     gene            complement(1554..1751)
                     /locus_tag="PF788_001690"
     CDS             complement(1554..1751)
                     /locus_tag="PF788_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008530242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303951.1"
                     /translation="MSILTIILIALLVILLFRVGLSILRFLIYVGLVLLCIYLGYQGL
                     IWLLDFFQINSGFLPHFQFNN"
     gene            1911..2384
                     /locus_tag="PF788_001691"
     CDS             1911..2384
                     /locus_tag="PF788_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4930 family protein"
                     /protein_id="HDG6303952.1"
                     /translation="MRLIFSMIKNIIAVIAIVIIVYIALKYAPFLKEQDWNPVNHDND
                     QMNQVTQPTNDAQHVYVSGEKYSLKENDLIKNVPLSQIKNVFKMIDKQEFMAVSGMNR
                     MAYNDQYIIGQRGDEFILYKFGDESMRVYNTEFEMQQDLNELGQNLQLKSENAYQ"
     gene            2458..2577
                     /locus_tag="PF788_001692"
     CDS             2458..2577
                     /locus_tag="PF788_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303953.1"
                     /translation="MAEQSKQKQANEQQKAQNLFARWRQLQNSNSESSNDTNK"
     gene            2777..3619
                     /gene="mreC"
                     /locus_tag="PF788_001693"
     CDS             2777..3619
                     /gene="mreC"
                     /locus_tag="PF788_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDG6303954.1"
                     /translation="MLKFFKNNKLIVVLCAIIVFIALIGLSIRSQSQSPPEQYIGDSV
                     SFGQRVVSYPVNFVAGTIGDFFKKGDSKESKNKISQLESKNQQLEAENEKLKKELDLK
                     DISKFDPISTTVLARNPDQWMNTIVIDKGSKSGITSNMAVMTSQGFVGRVTKVNKFSS
                     QVDLISTNTRAGKLSVNIQHGSKNIFGLIDRYDEKNSELVISDINNRDNISKGDKVVT
                     SGLADQLPSNLYIGEVTKVQNDQYGLAKEVRVKTGADLTDLSHVYVAKRDPKTIPDDE
                     SRDK"
     gene            3619..4149
                     /gene="mreD"
                     /locus_tag="PF788_001694"
     CDS             3619..4149
                     /gene="mreD"
                     /locus_tag="PF788_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDG6303955.1"
                     /translation="MRTLYYFLIGILLFYIDTAIGLLIPMHIGKFELVFVPHLTFMYI
                     LMMVVYRGFGVSLLLSIFLGVMTDVYFGSIYGVYLFGYILFLALIDRFFKIFYKDHSM
                     LFIIILASTLLLEVYVALIYGMLGFIQFDIIHFVVFRLLPTLIMNFVLLIMLYPLIIK
                     FLKKTNNDIDMKRRQW"
     misc_feature    4176..4303
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00559"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L21 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00559"
     gene            4316..4624
                     /gene="rplU"
                     /locus_tag="PF788_001695"
     CDS             4316..4624
                     /gene="rplU"
                     /locus_tag="PF788_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000457386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDG6303956.1"
                     /translation="MFAIIETGGKQIKVEEGQEIFVEKLDVNEGDTFTFDKVLFVGGD
                     SVKVGAPTVEGATVTATVNKQGRGKKITVFTYKRRKNSKRKKGHRQPYTKLTIDKINA
                     "
     gene            4630..4950
                     /locus_tag="PF788_001696"
     CDS             4630..4950
                     /locus_tag="PF788_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal-processing cysteine protease Prp"
                     /protein_id="HDG6303957.1"
                     /translation="MITVDITVNDEGKVTDVIMDGHADHGEYGHDIVCAGASAVLFGS
                     VNAIIGLTSERPDINYDDNGGHFHIRSVDTNNDEAQLILQTMLVSLQTIEEEYNENIR
                     LNYK"
     gene            4962..5246
                     /gene="rpmA"
                     /locus_tag="PF788_001697"
     CDS             4962..5246
                     /gene="rpmA"
                     /locus_tag="PF788_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009382703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDG6303958.1"
                     /translation="MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQFVTGGSI
                     LYRQRGTKIYPGENVGRGGDDTLFAKIDGVVKFERKGRDKKQVSVYAVAE"
     gene            5601..6893
                     /gene="obgE"
                     /locus_tag="PF788_001698"
     CDS             5601..6893
                     /gene="obgE"
                     /locus_tag="PF788_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020444729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HDG6303959.1"
                     /translation="MFVDQVKISLKAGDGGNGITAYRREKYVPFGGPAGGDGGKGASV
                     VFEVDEGLRTLLDFRYQRHFKASKGENGQSSNMHGKNAEDLVLKVPPGTIIKNVETDE
                     VLADLVEDGQRAVVAKGGRGGRGNSRFATPRNPAPDFSEKGEPGEELDVSLELKLLAD
                     VGLVGFPSVGKSTLLSIVSKAKPKIGAYHFTTIKPNLGVVSTPDQRSFVMADLPGLIE
                     GASDGVGLGHQFLRHVERTKVIVHMIDMSGSEGREPIEDYKVINQELAAYEQRLEDRP
                     QIVVANKMDLPESQDNLNLFKEEIGEDVPVIPVSTITRDNIDQLLYAIADKLEEYKDV
                     DFTVEEEESVGINRVLYKHTPSQDKFTISRDDDGAYVVSGNAIERMFKMTDFNSDPAV
                     RRFARQMRSMGIDDALRERGCKNGDIVRILGGEFEFVE"
     gene            6906..7361
                     /locus_tag="PF788_001699"
     CDS             6906..7361
                     /locus_tag="PF788_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HDG6303960.1"
                     /translation="MDNKDYKKFYLIREDVLPESVVKTLKIKDALKSDPTLSIYDAVK
                     QFDLSRSAFYKYRETIFPVDDKMLDHREFTLILYVTDIVGMLARVLDVISKLELSVLT
                     IHQSIPMEEKATITLSLNAKSKETSVEDVIGALRNLDYVSKVELISMSM"
     gene            7375..7977
                     /gene="ruvA"
                     /locus_tag="PF788_001700"
     CDS             7375..7977
                     /gene="ruvA"
                     /locus_tag="PF788_001700"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDG6303961.1"
                     /translation="MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEV
                     LIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIE
                     NENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
                     ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS"
     gene            8009..9013
                     /gene="ruvB"
                     /locus_tag="PF788_001701"
     CDS             8009..9013
                     /gene="ruvB"
                     /locus_tag="PF788_001701"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDG6303962.1"
                     /translation="MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIK
                     AAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGL
                     QPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
                     RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTP
                     RVANRLLKRVRDFQQVNEDEQIYIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNG
                     GPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATPLAYEHFAKSNEERE
                     "
     gene            9015..10040
                     /gene="queA"
                     /locus_tag="PF788_001702"
     CDS             9015..10040
                     /gene="queA"
                     /locus_tag="PF788_001702"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDG6303963.1"
                     /translation="MNIEEFDYDLPESLIAQTPLKDRDHSRLLVMDRETGEMKHLHFK
                     DIIEYFRPGDTLVLNDTRVMPARLFGLKEETGAKVEMLMLTQIEGNDWEVLLKPAKRI
                     KVGNKLNFGNGKIIAECIKEMDQGGRIMRLHYEGILQERLDELGEMPLPPYIKERLDD
                     PDRYQTVYAKESGSAAAPTAGLHFTDELLIEIKNKGVNIAFVTLHVGLGTFRPVSVDD
                     VNDHEMHSEYYQMTQETADLLNDTKSKGHRIISVGTTSTRTLETIRRDHDKFVETSGW
                     TNIFIYPGFDFKAIDGQITNFHLPKSTLVMLVSAFSSRENVLNAYKTAVNLEYRFFSF
                     GDAMLII"
     gene            10063..11202
                     /gene="tgt"
                     /locus_tag="PF788_001703"
     CDS             10063..11202
                     /gene="tgt"
                     /locus_tag="PF788_001703"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDG6303964.1"
                     /translation="MPAVTYEHIKTCKQSGARLGIVHTPHGSFETPMFMPVGTKATVK
                     TMSPEELRQIEAKIILGNTYHLWLQPGNDIIKHAGGLHKFMNWDGPILTDSGGFQVFS
                     LSNLRKITEEGVEFRHHTNGSKLFLSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYV
                     KKSIERTTRWAKRCLDAHQRPEDQALFGIIQGGEYEDLREQSAKDLVELDFPGYAIGG
                     LSVGEPKPVMYKMVEHTEQFMPKDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIA
                     RNGTCMTSQGRLVIKNAKFADDLRPLDENCDCYTCQNYSRAYIRHLIKAEETFGIRLT
                     TIHNLHFLLKLMEDIRQAIREDRLLDFKEEFFEQYGLNVENPKNF"
     gene            11221..11481
                     /gene="yajC"
                     /locus_tag="PF788_001704"
     CDS             11221..11481
                     /gene="yajC"
                     /locus_tag="PF788_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDG6303965.1"
                     /translation="MQFSLLIYIVVIFAVMYFLMIRPQQKRAKQHRELINNIQSGQRI
                     TTIGGIKGTVKAVDETTVVITVNGHGTELTFEKPAIKQVDPS"
     gene            11756..14035
                     /gene="secDF"
                     /locus_tag="PF788_001705"
     CDS             11756..14035
                     /gene="secDF"
                     /locus_tag="PF788_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500252.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecDF"
                     /protein_id="HDG6303966.1"
                     /translation="MKKSSRIIAFLLLVVLLFAGMAATYKSVIKNVNLGLDLQGGFEV
                     LYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQN
                     EARKILSSQANLTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKK
                     VTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPINSDSVEISGGFK
                     GQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLF
                     MLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYE
                     RIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLL
                     GILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEK
                     WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQV
                     VKDSGLKADQIQINGKDNKVATVQFKDDLTRAQDNKLSDNIKSKFGDTPQINTVSPII
                     GQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVD
                     LTFIAAVLTIVGYSINDTIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSIN
                     TVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKSP
                     KHKLVVYKEKKSNDEKILV"
BASE COUNT         4968 a         1933 c         2688 g         4493 t
ORIGIN      
        1 gtttttctgc ttatttttac tatgaccgat atcacttctt taatgttaga ttgtcgctta
       61 attataattt attgtatcgt ttctctctcg ttaagtatga tttatccagt agcttttatc
      121 attattagta tgaccacgca tatattctac tttttatttc gggcatatat tggttatggt
      181 gacgttttac taatatctgc actttctttg tttttccctc tccaattcac tatttatgtc
      241 attttattta catttgtcat tgctggttta gttgctttaa ttaccatgat atttaagccg
      301 attaaactat taccccttgt tccatttata tttatttcct tttttatcaa ttcacttttt
      361 tataatgata tccatcaatt tttaggaggc gtatattttt gaaaattaaa gaaatggtaa
      421 cttcagaaat gccaagagaa cgtttgttaa gccatggtgc aaaaagtctt tcgaatacag
      481 aattattagc tatattaatt aacaccggaa gaaaaggatt ctcgagcata gacattagta
      541 atgaactgct taaatctgct tcgaatctga atgaattgaa aaaatcttca attaacgatt
      601 tgataaaagt taaagggatt ggattacaaa aagcaattac tttaaaagca gcatttgagt
      661 taggggaaag gatggggaga agagctgaaa ataatcgtat aaaaataacg caaccaagtg
      721 atgttgctga ttatatgatt ccaacaatga aagatttaac acaagaacat tttgtcattt
      781 tattgttaaa ttcaaaaaat gtagtgatta aagaaacctg tgtttttaaa ggtacattaa
      841 atagttcgat tgtacatcca cgtgaaattt ttagtattgc ggtgagagaa aatgccaatg
      901 caatcatcgc agttcataat catccatccg gtgatgtaac gccctcacaa gaagatatca
      961 taacaacaat gaggttgaag gagtgtggtt tgattttagg gatagattta ttggatcata
     1021 ttataatcgg tgataataga tttaccagtc ttgtagaagc gggttacttt gatgaaaatg
     1081 attgaagttg atagaattaa tgacgtatct tgtgtataat acctacgaag tactttcatt
     1141 ggaggaaaaa tagtgactct atttattatt atcggggttc tcgtgccaat ggtttatacc
     1201 atgcagttaa atattaaaaa tgaacctgta acaaagcgca atcttttaat aacattagct
     1261 ttatctacgt taggtatttt agtaaccgcg ttagcaggtg taatcgttac gaaacaagct
     1321 tttcctttat taagtgtagc aattggctca atttttactg gaatcgtttg gggcctttta
     1381 ctaagtggta gctacgcgct gatacgattt ttatctaacg catttgggcg taagtaatag
     1441 taatctgttc atcaagtagt atccgtgctt gaaaacaaac taaaactcct aatgtggaac
     1501 tagttaaaaa attctaaact agtacattag gagttttgtt atgcagaata aatttaattg
     1561 ttaaattgaa agtgcggtaa aaatccacta tttatttgaa aaaaatcgag caaccaaatt
     1621 aaaccttgat atcctaagta aatacataat aaaacaagtc cgacataaat taaaaatcgc
     1681 aaaatagaaa gtccaactct aaaaaggagg atgactaata gtgctattaa aataattgtt
     1741 agtatactca atgctacaaa cctcctaata cgcttttaaa tcataacaaa attataagct
     1801 attttaaatg aacgtgcatc agtcctaaga tatatcatga ttaaggctga agactgagga
     1861 aaatatacat aataaaatat ataattagat gaagacattg gaggcgaact atgagattga
     1921 tatttagtat gattaaaaac attatagcag taatagcaat tgtgataatt gtttatatcg
     1981 ccttgaaata cgcacctttt ttaaaagaac aagattggaa tcctgtaaat cacgataatg
     2041 atcaaatgaa tcaagttacg caacccacta atgatgccca acatgtttat gtaagtggtg
     2101 agaaatattc attaaaagaa aatgatttaa taaagaatgt accattaagc caaattaaaa
     2161 atgtatttaa aatgatagat aaacaagagt ttatggctgt gtctggaatg aatcgcatgg
     2221 cttataatga tcaatatatt ataggtcaaa gaggagacga atttattctt tataaatttg
     2281 gagatgagtc aatgcgtgtt tacaatactg aatttgaaat gcaacaagac ttaaatgaat
     2341 tagggcaaaa tttacaacta aaatctgaaa atgcttatca ataggaaatt attgcataag
     2401 aaatatattt tagttatcct gtcactagaa taaatttaaa aggttggtgt agttcaaatg
     2461 gcagaacaat caaaacagaa acaagctaat gaacaacaaa aggcccagaa cttattcgca
     2521 cgttggagac aacttcagaa ttcgaacagt gaatcctcga acgatacaaa caaataattt
     2581 taaaatttaa atcgattatt taaactacta gtgactggaa tgtttgctag tagttttttt
     2641 gtttttaaaa tgccacaaat tttttacgga gttgttcatt ttcaaagtaa ttcgtagtta
     2701 gtgctttatt tcataatggg agtaatataa aatagaaaag gatatacaat attttgacat
     2761 aatagaggtg ttctgggtgc ttaagttttt taaaaataac aaattaattg ttgttttatg
     2821 tgcaattatc gtttttattg cattaattgg gctgtccata cgttcacaat ctcaatcacc
     2881 tcctgaacaa tatataggtg attctgtgtc ttttggacaa cgagttgtga gttatccagt
     2941 taattttgtt gctggtacga ttggggactt ttttaaaaaa ggagattcta aagaatctaa
     3001 aaataagatt agccagttag aatctaagaa ccaacaatta gaagcggaaa atgaaaaatt
     3061 aaaaaaagag cttgatttaa aagatatttc aaaatttgat cctatttcta ctacggtttt
     3121 ggcaagaaat ccggatcagt ggatgaatac aattgtaatt gataagggat ctaaatcagg
     3181 tataacttca aatatggctg tgatgacatc acaaggtttt gttggaagag ttactaaagt
     3241 taataaattt tcttcacaag ttgatttaat ctcaactaat acacgtgcgg gtaaattatc
     3301 tgtaaatata caacacggtt ctaaaaatat atttggttta attgatcgtt atgatgaaaa
     3361 gaactcagaa cttgtaatta gtgacattaa taatagagat aatatctcaa aaggtgataa
     3421 agtcgttaca agtggattag ctgatcaact accaagtaat ttatatatag gagaagtgac
     3481 taaggttcaa aatgatcaat acggcttagc taaagaagtt agggttaaga ctggtgcgga
     3541 cttaacagat ttgagtcatg tttatgttgc aaaaagagat cctaaaacaa ttcctgatga
     3601 tgaaagcagg gataaataat gcgtacactg tattattttt tgataggtat tttactattt
     3661 tatatagata ctgcaattgg gcttcttatt ccaatgcaca taggtaagtt tgaacttgta
     3721 tttgtaccac accttacatt tatgtatatt ttaatgatgg tagtgtatcg tggctttggc
     3781 gtatcattat tgctcagcat atttttaggc gtaatgactg atgtatactt tggtagtatt
     3841 tatggagtgt acttatttgg ctatatattg tttttagcac ttatagatcg attctttaaa
     3901 attttttaca aagatcattc gatgttattc attattatat tagccagcac cttattatta
     3961 gaagtctatg tggcattaat atacggtatg ttaggattca ttcaatttga tattattcat
     4021 tttgtagtct ttagattatt gccaacatta attatgaatt ttgtactgtt gattatgctt
     4081 tatccgttga ttataaagtt ccttaaaaaa acaaacaatg acattgacat gaaacgtcgt
     4141 caatggtaag atgcaatagt tgagtagtta taagtagcta catacaaccg ctcaaatata
     4201 ggttcaagaa catttttaat gaagaaagcg attttcccac agagtgcaaa cgcttgactc
     4261 aataacgaaa tgtcacctat gtatggcgtg acttattata caggaggtgc aaagtatgtt
     4321 tgctattatt gaaacaggtg gaaaacaaat caaagtagaa gaaggtcaag aaatcttcgt
     4381 tgaaaaatta gacgtaaacg aaggagatac ttttacattt gataaagtat tatttgtagg
     4441 tggagattca gttaaagttg gagcgccaac agttgaaggt gcaacagtta ctgctactgt
     4501 taataaacaa ggtcgcggta aaaaaatcac tgtattcaca tacaaacgtc gtaaaaattc
     4561 aaaacgtaaa aaaggccatc gtcaaccata cactaaatta acaatcgata aaatcaacgc
     4621 gtaattatta tgattactgt tgatattaca gttaatgatg aaggcaaagt aacagacgtt
     4681 attatggatg gccatgctga ccatggtgaa tatggtcatg atatcgtttg tgctggagct
     4741 tcagctgtat tgtttggtag tgttaatgcg attataggat tgacatctga gagaccagat
     4801 atcaattatg acgacaatgg tggtcatttt catataagaa gcgttgatac aaacaacgat
     4861 gaagcgcaac taattcttca aacaatgctt gtgtctttac aaactattga agaagaatat
     4921 aatgagaata ttagattaaa ttataagtga ggtgcattcc gatgttaaaa ttaaacttac
     4981 aattcttcgc atctaaaaaa ggggtaagtt ctacaaaaaa cggacgtgac tctgaatcaa
     5041 aacgcttagg tgctaaacgt gctgacggtc aattcgtaac aggtggttca attttatatc
     5101 gccaacgtgg tactaaaatt taccctggtg aaaatgtagg tcgtggtggc gatgatacat
     5161 tattcgctaa aatcgacggc gttgttaaat tcgaacgtaa aggtcgcgac aaaaaacaag
     5221 tttctgtata tgcagtagct gaataatttt gtctagttaa caccagaagt gaatcttctg
     5281 gtgtttttta ctttttataa aatgtttttc attattattt tcattatgtt attaaaaaat
     5341 gggaatttta gacgttatac taaatgtgca actgtataag agcccctaat cactaaacta
     5401 taagggggac aaaggaatac agttgcagcg tttaaagaat aaactgtacc acaattggtg
     5461 ctgagaaata taagtatttt aaagcaaaga tttataaaag taactgcata agagccccta
     5521 attatttaca atatataagg ggctctaata tgctataatt attgggaaaa tgaaaattat
     5581 atgtaaaaga ggtgagatat atgtttgtcg atcaagtcaa aatatctctt aaagccggtg
     5641 atggtggtaa tggtattacc gcatacagaa gagaaaaata tgtaccattt ggtggaccag
     5701 ctggcggtga cggtggtaaa ggtgcttcag tcgtatttga agtggatgaa ggtttaagaa
     5761 cgttattaga ttttagatat caacgtcatt ttaaagcaag caaaggtgaa aatggccaaa
     5821 gtagtaatat gcatggtaaa aatgcggaag atttagtatt aaaagttcca cctggtacaa
     5881 ttattaaaaa tgttgaaaca gacgaagtgt tagcagatct tgttgaagat ggtcaaagag
     5941 ctgtagtagc gaagggcggt cgaggtggcc gaggtaattc acgttttgca acacctagaa
     6001 accctgcacc tgacttcagt gaaaaaggtg aaccaggtga ggaattagat gtatctttag
     6061 aattgaaatt attagctgat gtaggattag taggtttccc tagtgtgggt aaatcgactt
     6121 tattatctat cgtttcaaaa gctaagccta aaattggggc atatcatttt acaacgatta
     6181 aaccaaatct aggtgttgtt tcaacgcctg atcaacgtag ttttgttatg gcagatttac
     6241 caggtttaat tgaaggtgca tctgatggcg ttggattagg acatcaattt ttaagacatg
     6301 tagagagaac aaaagttatt gttcacatga ttgatatgag cggttctgaa ggtagagaac
     6361 ctattgaaga ttataaagtc attaatcaag aattagctgc gtacgagcaa cgtttagaag
     6421 atagacctca aatcgtagta gctaacaaga tggatttacc tgaatcacaa gataatttaa
     6481 acttgtttaa agaagaaatt ggcgaagatg tgccagttat tccagtttca acaataacgc
     6541 gtgataatat tgatcaatta ttatatgcaa tagcagataa attagaagaa tataaagatg
     6601 ttgacttcac agttgaagaa gaggagtcag ttggcattaa ccgagtatta tataaacata
     6661 caccgtcaca agataaattt acaatttcaa gagatgatga tggtgcttat gtggtaagtg
     6721 gtaatgctat tgaaagaatg tttaaaatga ctgactttaa cagtgatcca gcagtacgtc
     6781 gatttgctcg tcaaatgcgt tcgatgggta ttgatgatgc gcttagagaa cgtggttgta
     6841 aaaatggtga tatcgttaga attcttggcg gagaatttga attcgttgaa taggagcgaa
     6901 acatgatgga caataaagat tataaaaagt tttatttaat tagagaagat gtcttgcctg
     6961 aatccgtggt taaaacattg aagattaaag atgccttaaa aagtgatccg acattgtcca
     7021 tttatgatgc cgttaaacag tttgatctat ctagaagtgc tttttataaa tatagagaaa
     7081 cgatatttcc agtagacgat aaaatgcttg accatcgaga atttacatta attttatatg
     7141 taactgatat tgttggtatg ttggcacgtg tactagatgt tatatcaaag ttagaactat
     7201 ctgtattaac gattcatcaa agtattccaa tggaagaaaa agcaacaata acattatcac
     7261 tgaatgctaa atctaaagaa acttcagtag aagatgttat tggcgctttg agaaatttag
     7321 attatgtatc aaaagtagaa ttaattagta tgagtatgta aggatgtgcc tataatgtac
     7381 gcgtatgtca aaggtaagtt aacacattta tatcctacac acgtagttgt tgaaactgct
     7441 ggtgttggtt atgaaattca aacaccaaat tcttatcgtt ttcaaaagca tctagatcat
     7501 gaagttttaa ttcatacatc tttaattgtt cgtgaagatg cacaattatt gtatggattt
     7561 agtagtgaag aagagaaaga tatgttcttg agtttaatta aagttactgg tattggtccg
     7621 aaatcagctt tagctatttt agcgacaagt acgcctaatg aagtaaaacg tgccattgaa
     7681 aatgaaaatg atacgtattt aactaaattc ccaggaattg gtaagaaaac ggcaagacag
     7741 attgtcttag atttaaaagg taaagtgaaa attactgaag aagatagcga ttcattatta
     7801 caagtagacg ctacttcgac ggtgcaagat caattcgtgc aagaagcaat gttagcgtta
     7861 gaagcattag gttattctaa acgagagctt gcaaaagttg agaaaacgtt aaataaaaat
     7921 aaatatgact cagttgatga agctgttaag gcaggtcttc aattagttgt atcttaattt
     7981 taaatagatt aataggggaa gtgttgtcat gaatgagcgt atggttgatc aatcaatgca
     8041 tagtgaagaa actgatttcg aattgtcgct tagacctacg agattacgac aatatattgg
     8101 tcaaaattca ataaaaagta atttagaagt atttattaaa gcggctaaac ttcgtcatga
     8161 accattagat catgtattgc tttttggccc ccctggatta ggtaagacaa cattatctaa
     8221 tatcattgcc aatgaaatgg aagttaatat acgtacagta tcagggcctt cattagaaag
     8281 acctggtgat ttggctgcaa ttttatcagg acttcaacct ggagatgttt tgtttattga
     8341 tgaaatacac agactgagta gtgttgttga agaagtgtta taccctgcaa tggaagattt
     8401 ctttttagat attatcattg gtaaaggcga tgaggctaga agtatccgta tcgacttacc
     8461 tccattcact ttggtaggtg caacaacgcg agctggcagc ttaacaggtc cactaaggga
     8521 tcgatttggt gtgcacttaa gattagaata ttataacgaa tcagatttaa aagaaatcat
     8581 tattagaaca gctgaggttt taggcacagg tattgatgaa gaaagtgcca ttgaacttgc
     8641 taaacgttct agagggactc caagagtagc aaatcgacta ttgaagcggg taagagactt
     8701 ccagcaagtg aatgaagatg aacaaatata cattgaaaca acgaagcacg cattaggttt
     8761 acttcaagtt gatcaacacg gactagatta cattgatcat aaaatgatga actgtattat
     8821 taagcagtat aatggcggac ctgttggttt agatacgatt gccgtaacaa ttggtgaaga
     8881 acgtattaca attgaggacg tttatgagcc atttcttatt cagaaaggct ttttagaacg
     8941 tacgccacgt ggcagaaaag caacaccatt agcttatgaa cattttgcaa agtcgaatga
     9001 ggagagagaa taacgtgaat attgaagaat ttgactatga cttaccagaa tcattaattg
     9061 ctcaaacgcc tttaaaagat cgtgatcata gtcgtttatt agtcatggat agagaaactg
     9121 gtgaaatgaa acatttacat ttcaaagata tcattgagta ttttagacct ggtgatacat
     9181 tagtgcttaa cgatacgcga gtaatgccag ctagactttt tggtttaaaa gaagaaactg
     9241 gtgcaaaagt tgaaatgtta atgttaactc aaattgaagg taatgattgg gaagtcttac
     9301 tgaaaccagc taagcgtatt aaagttggta ataaattgaa ttttggtaat ggcaaaatta
     9361 tagctgaatg cataaaagaa atggatcaag gtggacgcat catgcgttta cattatgaag
     9421 gtattttaca agaaagatta gatgaattag gggaaatgcc actgccacca tacatcaaag
     9481 aacgtttaga tgatccagat cgttatcaaa cagtttacgc taaagaaagt ggttcagcgg
     9541 cagcaccaac agcaggatta cattttactg atgagttatt aattgaaatt aaaaataaag
     9601 gtgttaatat cgcatttgtt acattacatg ttgggttagg tacgtttaga ccggtgagcg
     9661 tagacgatgt gaatgaccac gaaatgcata gtgaatatta tcaaatgaca caagaaacag
     9721 ctgatttatt aaatgatact aagtccaaag gacatcgcat tatatcagtt ggtacaactt
     9781 caacacgtac acttgaaaca attcgacgcg atcatgataa atttgttgaa acgagtggct
     9841 ggactaatat atttatttat ccaggatttg attttaaagc aattgatggc cagattacta
     9901 attttcattt accaaaatca acattagtta tgctagtatc agcgtttagt agtcgtgaaa
     9961 atgttctgaa tgcttataaa acggcagtaa atttagaata tagattcttt agttttggcg
    10021 atgcaatgtt aattatataa aaagaatgtg aggattttga atatgcctgc agtaacatac
    10081 gaacacatta aaacttgtaa acaatcaggt gcgcgtttag gtatcgtgca cacaccacac
    10141 ggttcatttg aaacacctat gtttatgcca gttggtacta aagcaaccgt taaaacaatg
    10201 agtccagaag agttaagaca aattgaagca aaaatcattt tgggcaacac atatcatttg
    10261 tggttacaac ccggaaatga tattatcaaa cacgctgggg gattacataa attcatgaat
    10321 tgggatggtc cgattcttac agattcaggc ggtttccaag tgtttagttt aagtaattta
    10381 cgtaaaatta cagaagaagg cgtggaattt agacatcata ctaatgggtc taaattattt
    10441 ttgagtcctg agaaatcaat gcaaattcaa aatgatttag gatctgatat tatgatggca
    10501 tttgatgaat gtccaccgat gcctgctgaa tatgattatg taaaaaaatc tattgaacgt
    10561 acaacacgtt gggcgaaaag atgtctagat gcacaccaaa gacctgaaga tcaagcattg
    10621 ttcggcatta tacaaggtgg cgaatatgaa gatttaagag aacaaagtgc aaaggattta
    10681 gtagaattag attttcctgg ttatgcaatc ggcggtttgt cagttggtga acctaaaccg
    10741 gttatgtata aaatggttga acatacagag cagtttatgc ctaaagataa accaagatat
    10801 ttaatgggtg taggatctcc agatgcgtta atcgaatgta gtattcgcgg catggatatg
    10861 tttgattgtg tcttaccgac acgtattgcc agaaatggta cttgtatgac atcgcaaggt
    10921 cgtttagtta ttaaaaatgc aaaatttgca gatgatttaa gaccgttaga tgagaattgt
    10981 gactgttata catgtcaaaa ctattcaaga gcgtatatac gtcatttaat caaggcagag
    11041 gaaacttttg gtattcgtct tactactatt cataatttac attttctgct aaaattaatg
    11101 gaagatataa gacaagccat tcgagaagat cgtcttttag atttcaaaga agaattcttc
    11161 gagcaatatg gattaaatgt tgagaaccca aaaaactttt aagcaagagg agcgtataaa
    11221 atgcaatttt cattactaat atatatagtc gtaatttttg cggttatgta tttcttgatg
    11281 atcagaccac aacaaaaacg tgcgaaacag catcgtgagt tgattaataa cattcaatct
    11341 ggtcaaagaa ttacaactat tggtggtatt aaaggtactg ttaaagcagt agatgaaaca
    11401 actgttgtta ttacagttaa tggtcatggt actgaattaa ctttcgaaaa acctgctatt
    11461 aaacaagttg acccttcata atgagaagtg gtattaaaaa ggatgaaacg aatagcgttt
    11521 catccttttt aagttataag tagtatgtag aatagcttat ttttattcca aaaaaagaaa
    11581 ttgtgataca taataattgt taaatttaaa ttaaatatat ctatgactat ttttactccc
    11641 tgctctagta tgttaatatg tataaggcta ataaattttg taagaaagat ttaacttgcg
    11701 ttataaaata gtattcaagt attctaaata catacgtaaa taatgaggtg ttcatgtgaa
    11761 gaaaagtagt agaataattg cgttcttgct tttagtcgta ttgttgtttg ccggaatggc
    11821 tgcaacttat aaaagtgtta taaagaatgt caatttagga cttgatttgc aaggtggatt
    11881 tgaggtgctt tatcaagtcg atcctttaaa taaaggcgac aaaatagata aaaaagcctt
    11941 acaatcaaca gcgcaaacat tagaaaatcg tgttaacgtt ttaggtgttt cggaacctaa
    12001 aattcaagtt gaagaaccta atagaattag agtacaactt gctggtgtaa cagaccagaa
    12061 tgaagcacgt aaaattttat cttctcaagc taatttaaca attcgcgatg cagaagataa
    12121 agtaaaatta agcggttctg atattaaaca gggatctgcc aaacaagaat ttaaacagga
    12181 aacaaaccag cctacagtta cttttaaagt aaaagacaaa aacaaattta aaaaagtaac
    12241 ggaagaaatc tctaagaaac gtgataatgt catggttgtt tggttagatt tcaaaaaagg
    12301 tgacagctat aaaaaagaag cacaaaagaa aaaccctaaa tttatttctg cagcaagtgt
    12361 tgatcaacca atcaattctg atagcgtaga aatctcgggt ggatttaaag gacaagaagg
    12421 cgttaaaaaa gcaaaacaaa tcgccgaatt gttaaatgca ggttctttac cagttgactt
    12481 gaaagaaatt tattcaaact cagtaggtgc ccaatttggt caagatgcat tagataaaac
    12541 tgtgtttgca tcgtttattg gtgtagcatt aatttattta ttcatgcttg gattctaccg
    12601 attacctggt ttagtagcga ttattgcatt gacaacttat atctatctaa cgttagtagc
    12661 atttaatttc atttccgggg ttctaacttt accaggatta gcggcgttgg tattaggtgt
    12721 aggtatggct gtagatgcca atattatcat gtatgagcgt attaaggatg aacttcgaat
    12781 aggtagaacg ataaagcaag ccttttctaa agcaaacaaa agttcattcc taacaatttt
    12841 tgattctaac ttaacaacag ttatcgccgc agcagtatta ttcttcttcg gtgaaagttc
    12901 agttaaaggt ttcgcgacaa tgttattatt aggtattcta atgatctttg ttacagccgt
    12961 gttcttatca agattcttat tatcattact tgtttcatca aatatattca aaaatcaatt
    13021 ttggttattt ggtgttaaaa agaataaacg acatgatatt aatgaaggtg tagatgttca
    13081 tgaccttaaa acttcattcg agaaatggaa ttttgttaaa ttagctaagc cattaattgg
    13141 agtaagtatt ttaattgtag ttgtcggttt agttattctt tatatcttca agttaaactt
    13201 aggaattgat ttctcaagtg gtacacgcgt agatttccaa tctaaacaag caattactca
    13261 acaaaaggta gagcaagttg taaaagatag tggacttaaa gcggatcaaa ttcagatcaa
    13321 tggtaaagac aataaagtag caactgttca atttaaagac gatttaacgc gtgctcaaga
    13381 taataaattg agtgataata ttaaatcgaa attcggtgac acacctcaaa ttaacactgt
    13441 atcaccaatt attggacagg aattagcaaa aaatgcaatg cttgcattaa tctatgcatc
    13501 gataggtatc atcatctatg tatcattacg atttgaatgg cgcatgggtc tttcatctgt
    13561 attggcatta ttacatgatg tattcattat agtagcgatt ttcagtttat ttagaattga
    13621 agtagattta acatttatcg ccgctgtatt aacaattgtc ggttattcaa ttaatgatac
    13681 aatcgtaacg tttgaccgtg tacgtgaaaa cttacaaaag gttaaagtga ttacgacaac
    13741 agaacaaatt gatgatatcg ttaatagatc aattagacag acaatgacac gttcaattaa
    13801 tacagtatta acagttattg tagtagtagt tgctatacta ttcttcggtg ctcctacgat
    13861 attcaacttt actttagcat tatttatcgg attgatttct ggtgtattct cttcaatctt
    13921 cattgccgtt ccgctatggg gaataatgaa aaaacgtcag ttgaaaaaat cgccgaaaca
    13981 caaattagtt gtatataaag aaaagaaatc gaacgatgaa aagattttag tttaaaatga
    14041 attaagcggt atgtgaaaca ataaagagtt cacataccgc tt
//
LOCUS       DAMQWL010000064        13835 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.064, whole genome shotgun sequence.
ACCESSION   DAMQWL010000064 DAMQWL010000000
VERSION     DAMQWL010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 13835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13835
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.064"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            316..1158
                     /locus_tag="PF788_001706"
     CDS             316..1158
                     /locus_tag="PF788_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDG6303967.1"
                     /translation="MKIGDISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQI
                     NLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDID
                     YVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDY
                     SNKLILFEKHFEPVLGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLW
                     VTAYDDYPMQSIREKERMIPYFIQQQYWFLFYHDENYFAVKYSDNGENIDAYILRETL
                     VDNN"
     gene            complement(1283..1594)
                     /locus_tag="PF788_001707"
     CDS             complement(1283..1594)
                     /locus_tag="PF788_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HDG6303968.1"
                     /translation="MTKLKYIIPTIIAVAIVIISTISIIQFINRKRYNPVKVLNEVKS
                     YFMNVKGSYIVYEPFVHPETDKYRLVYQGGITTIKNGQNIHYDFYADAYTGEVINIVE
                     R"
     gene            1681..2757
                     /locus_tag="PF788_001708"
     CDS             1681..2757
                     /locus_tag="PF788_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HDG6303969.1"
                     /translation="MNINKKVTLQRIQTLTELHGAPGFEEEVKNYMTQQMAPYVDEFI
                     ENRMGGFFGVKKSKNPNAKRVMIAAHMDEIGFMITNITKNGMIQFTNLGGVANDIWQG
                     QRLVIKNRNGDKIIGVVSNIPKHFRTGSEGAPEIKDLTLDIGAQNEDEVRERGIDIGD
                     TIVPHTPFTQLSEHRYSAKAWDNRYGCVLAIEILELLKDIELDVDLYVGANVQEEVGL
                     RGAKASAEMIDPDVAFVVDCSPANDVKGNQPLSGELGKGTLIRIKDGTMILKPVFRDY
                     LLKLVEAHDIEHQYYMSPGGTDGGEIHKANIGIPTAVIGVCARYIHSTDSVFDIRDYF
                     AARSLLSEAICNLDNNQIETLQYK"
     gene            2822..3133
                     /locus_tag="PF788_001709"
     CDS             2822..3133
                     /locus_tag="PF788_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDG6303970.1"
                     /translation="MKQLESEQQFESLKQGATVFEFTAGWCPDCRVIEPDLPELEARY
                     PMFDFVSVDRDKFMDICIENGIMGIPSFLVYKNGELLGSYIGKERKSIEQIDAFLAQY
                     V"
     gene            3233..4090
                     /locus_tag="PF788_001710"
     CDS             3233..4090
                     /locus_tag="PF788_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1444 domain-containing protein"
                     /protein_id="HDG6303971.1"
                     /translation="MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIK
                     LNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQ
                     GVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSY
                     TTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRN
                     KTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEA
                     NRRKFNKDK"
     gene            4119..4715
                     /locus_tag="PF788_001711"
     CDS             4119..4715
                     /locus_tag="PF788_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 domain-containing protein"
                     /protein_id="HDG6303972.1"
                     /translation="MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVG
                     YNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKD
                     KHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGV
                     ASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE"
     gene            4736..8560
                     /locus_tag="PF788_001712"
     CDS             4736..8560
                     /locus_tag="PF788_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HDG6303973.1"
                     /translation="MSWFDKLFGEDNDSNDDLIHRKKKRRQESQNIDNDHDSLLPQNN
                     DIYSRPRGKFRFPMSVAYENENVEQSADTISDEKEQYHRDYRKQSHDSRSQKRHRRRR
                     NQTTEEQNYSEKRGNSKISQQSIKYKDHSHYHTNKPGTYVSAINGIEKETHKPKTHNM
                     YSNNTNHRAKDSTPDYHKESFKTSEVPSAIFGTMKPKKLENGRIPVSKPSEKVESDKQ
                     KYDKYVAKTQTSQNKQLEQEKQNDSVVKQGTASKSSDENVSSTTKSMPNYSKVDNTIK
                     IENIYASQIVEEIRRERERKVLQKRRFKKALQQKREEHKNEEQDAIQRAIDEMYAKQA
                     ERYVGDSSLNDDSDLTDNSTDASQLHTNGIENETVSNDENKQASIQNEDTNDTHVDES
                     PYNYEEVSLNQVSTTKQLSDDEVTVSNVTSQHQSALQHNVEVNDKDELKNQSRLIADS
                     EEDGATNKEEYSGSQIDDAEFYELNDTEVDEDTTSNIEDNTNRNASEMHVDAPKTQEY
                     AVTESQVNNIDKTVDNEIELAPRHKKDDQTNLSVNSLKTNDVNDNHVVEDSSMNEIEK
                     NNAEITENVQNEAAESEQNVEEKTIENVNPKKQTEKVSTLSKRPFNVVMTPSDKKRMM
                     DRKKHSKVNVPELKPVQSKQAVSERMPASQATPSSRSDSQESNTNAYKTNNMTSNNVE
                     NNQLIGHAETENDYQNAQQYSEQKPSVDSTQTEIFEESQDDNQLENEQVDQSTSSSVS
                     EVSDITEESEETTHPNNTSGQQDNDDQQKDLQSSFSNKNEDTANENRPRTNQQDVATN
                     QAVQTSKPMIRKGPNIKLPSVSLLEEPQVIESDEDWITDKKKELNDALFYFNVPAEVQ
                     DVTEGPSVTRFELSVEKGVKVSRITALQDDIKMALAAKDIRIEAPIPGTSRVGIEVPN
                     QNPTTVNLRSIIESPSFKNAESKLTVAMGYRINNEPLLMDIAKTPHALIAGATGSGKS
                     VCINSILMSLLYKNHPEELRLLLIDPKMVELAPYNGLPHLVAPVITDVKAATQSLKWA
                     VEEMERRYKLFAHYHVRNITAFNKKAPYDERMPKIVIVIDELADLMMMAPQEVEQSIA
                     RIAQKARACGIHMLVATQRPSVNVITGLIKANIPTRIAFMVSSSVDSRTILDSGGAER
                     LLGYGDMLYLGSGMNKPIRVQGTFVSDDEIDDVVDFIKQQREPDYLFEEKELLKKTQT
                     QSQDELFDDVCAFMVNEGHISTSLIQRHFQIGYNRAARIIDQLEQLGYVSSANGSKPR
                     DVYVTEADLNKE"
     gene            8584..9897
                     /locus_tag="PF788_001713"
     CDS             8584..9897
                     /locus_tag="PF788_001713"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDG6303974.1"
                     /translation="MTHYHFVGIKGSGMSSLAQIMHDLGHEVQGSDIENYVFTEVALR
                     NKGIKILPFDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIIDQYT
                     SVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMGLPESDYFAFEACEYRRHFLS
                     YKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKGIIAWGDDEHLRKIEADVPI
                     YYYGFKDSDDIYAQNIQITDKGTAFDVYVDGEFYDHFLSPQYGDHTVLNALAVIAISY
                     LEKLDVTNIKEALETFGGVKRRFNETTIANQVIVDDYAHHPREISATIETARKKYPHK
                     EVVAVFQPHTFSRTQAFLNEFAESLSKADRVFLCEIFGSIRENTGALTIQDLIDKIEG
                     ASLINEDSINVLEQFDNAVILFMGAGDIQKLQNAYLDKLGMKNAF"
     gene            9971..10462
                     /locus_tag="PF788_001714"
     CDS             9971..10462
                     /locus_tag="PF788_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HDG6303975.1"
                     /translation="MDWILPIAGIIAAIAFLILCIGIVAVLNSVKKNLDYVAKTLDGV
                     EGQVQGITRETTDLLHKVNRLTEDIQGKVDRLNSVVDAVKGIGDSVQTLNSSVDRVTN
                     SITHNISQNEDKISQVVQWSNVAMEIADKWQNRHYRRGSANYKANNVATDANHSYTSR
                     VDK"
     gene            10536..11894
                     /locus_tag="PF788_001715"
     CDS             10536..11894
                     /locus_tag="PF788_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303976.1"
                     /translation="MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGL
                     YFKNKVYQKADDLKVKEQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKA
                     QQAAIKEEASANNLSDTSQEAQEIQEAKREAQAEADKSVAVSNKESKAVALKAQQAAI
                     KEEASANNLSDTSQEAQEIQEAKKEAQAETDKSAAVSNEEPKAVALKAQQAAIKEEAS
                     ANNLSDISQEAQEVQEAKKEAQAEKDSDTLTKDASAAKVEVSKPESQAERLANAAKQK
                     QAKLTPGSKESQLTEALFAEKPVAKNDLKEIPQLVTKKNDVSETETVNIDNKDTVKQK
                     EAKFENGVITRKADEKTTNNTAVDKKSGKQSKKTTPSNKRNASKASTNKTSGQKKQHN
                     KKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKSSNASKTPNAKVEKAKSKIEKRTF
                     ND"
     gene            12029..12133
                     /locus_tag="PF788_001716"
     CDS             12029..12133
                     /locus_tag="PF788_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303977.1"
                     /translation="MRSFHVFMLFETSLDNNSDIAHFKLKMEKYSIIK"
     gene            12594..13685
                     /locus_tag="PF788_001717"
     CDS             12594..13685
                     /locus_tag="PF788_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-deoxy-7-phosphoheptulonate
                     synthase/chorismate mutase"
                     /protein_id="HDG6303978.1"
                     /translation="MSNKLESYRSEIVSLNHQILDLLSKRGELAQKIGEEKLKQGTRI
                     YDPQREKEMLNDLIDSNKGPFNDNTIKQLFKEIFKASTDLQKSENEKHLYVSRKLKPE
                     DTIVTFDNGGIIGDGNKSFVFGPCSVESFEQVEAVAKNLHAKGEKFIRGGAFKPRTSP
                     YDFQGLGVEGLKILKQIKDKYDLNVVSEIVNPNDFEVADEYLDVFQIGARNMQNFELL
                     KEAGRTKKPILLKRGLSATIEEFVYAAEYIASQGNQNIILCERGIRTYEKATRNTLDI
                     SAVPILKQGTHLPVMVDVTHSTGRKDIMLPTAKAALAVGADGVMAEVHPDPSVALSDA
                     GQQMDLDEFQAFYDELKPLADLYNAKKLK"
BASE COUNT         5388 a         1877 c         2548 g         4022 t
ORIGIN      
        1 aattatctct ataattaaaa gtgactaaac aaataactaa aggagataat gcgcctatga
       61 acaatgttat actaaatacc tttgatttaa aagaataaag cttgcatttt acttgtaaat
      121 tttaattatt aatttaaaaa tacaggccga tggttatgat gcatttacat ataatatgat
      181 tgcattaatc tttataagta gttagaagtg tattagtgtg gggcgtttcg tttttgttcg
      241 catttatgaa tagtgatatg atgtaataaa cacatgctaa ttgtaataac gaatacagaa
      301 agaataggtg atgttatgaa aatcggggat atatctattc attatctaaa tggtggcaat
      361 acaaaaatgg atggcggtgc aatgtttggt gttgttccga agccgttgtg gtcaaagcaa
      421 tacaatgcaa atgaacgaaa tcaaatcaat ttaccgacac atccaatttt gattcaaacg
      481 gctcaatata atttgattat agatgcaggt attggtaatg gtaaattatc tgaaaagcaa
      541 ttacgtaatt ttggagtaga tgaagaaagt catataattg ctgatttggc aaattataat
      601 ttaacgccaa aggatattga ttatgtgcta atgacacata tgcattttga tcatgctgcc
      661 ggtttgactg atcaagcagg acatgcaatt tttgaaaatg cgattcatgt tgtgcaacaa
      721 gatgagtggc atgagtttat tgcacctaat ataagaagta aatcaactta ctgggataag
      781 aataaaggcg attatagtaa caagttgatt ttattcgaaa aacattttga accggttctg
      841 ggtatcaaga tgcaacatag tggaggtcat agctttggcc acacgattat tacgattgaa
      901 agtcaaggag ataaagcagt tcatatgggt gatatattcc caactactgc acataaaaat
      961 cctctatggg taacggcata tgatgattat cctatgcaat cgattcgtga aaaagaacgc
     1021 atgataccat attttattca gcaacaatat tggttcttgt tttatcatga tgaaaactac
     1081 tttgctgtaa aatacagcga taatggtgaa aacatagatg catatatttt acgtgaaaca
     1141 ttagttgata ataactaaaa taaagatgta ttactaaaca aattttcaaa aataaaaaat
     1201 tgagccacat ccaatcttac taattagggt gtggctcatt tttaagtttt acgatccaaa
     1261 tcaaatatgg ataaaattcg tattaacgct ctacaatgtt aatgacttca ccagtatatg
     1321 catctgcata aaaatcataa tgaatatttt gaccattttt aatagttgta attccacctt
     1381 gataaactaa acggtattta tcagtttcag gatgaacgaa tggttcataa acgatatatg
     1441 agcctttgac attcataaaa tatgatttta cttcattaag tactttaacg ggattatagc
     1501 gtttacgatt aataaattgg atgattgaaa tggtagaaat aattacaatg gctactgcaa
     1561 ttattgttgg aattatatat ttcagtttag tcatcattta tgctcccttg atttcaaatt
     1621 catatcatta gtttaccata ttgaagatga tataataact tataaggagt gagaactttt
     1681 atgaacataa ataaaaaagt aacattacaa cgaattcaaa ctttaactga gcttcatggg
     1741 gcaccaggtt ttgaagaaga agtaaaaaat tatatgactc agcaaatggc gccgtacgta
     1801 gatgaattta ttgaaaatcg tatgggtgga ttttttggtg tgaaaaaatc taaaaatcca
     1861 aatgcaaaac gtgtaatgat tgcagcacat atggatgaaa tcggatttat gattacaaat
     1921 atcactaaaa atggaatgat tcaattcaca aatttaggtg gtgttgcaaa tgatatttgg
     1981 caaggacaac gcttagtaat taaaaataga aatggcgata aaattatcgg tgttgtttct
     2041 aatataccta aacattttcg tactggtagt gaaggtgcac cggaaattaa agatttaaca
     2101 ttagatatag gtgctcaaaa tgaagatgag gtgcgtgagc gcggaataga tataggagat
     2161 acaattgtac ctcacacgcc attcacacag ttatctgaac atcgatatag tgctaaagca
     2221 tgggataatc gttatggttg tgtcttggca attgaaatac tagaattatt aaaagatata
     2281 gaattagatg tagacttgta tgttggcgca aatgttcaag aagaggttgg attacgaggt
     2341 gcgaaagcat ctgcagagat gatagaccca gacgttgcat ttgtagttga ttgttcacct
     2401 gccaatgacg ttaaaggaaa ccaaccatta tctggtgaac ttggtaaagg gacgttaatt
     2461 cgcataaaag acggtacaat gattttaaag cctgtattta gagactattt attaaagtta
     2521 gtagaagcac atgacattga acatcaatac tatatgtcac caggtggaac agatggtgga
     2581 gaaattcata aagctaatat tggtattccg actgcagtta ttggtgtatg tgcacgatat
     2641 attcatagta cagactcagt atttgatata agagactatt ttgcagctag atctttactt
     2701 tcagaagcca tttgtaattt agataataat caaatagaaa cattacaata taaataatcg
     2761 ggtaataaca actattatct ctaaatagtt atatataatc attaattaag gagacataaa
     2821 aatgaaacaa cttgaatcag aacaacaatt tgaatcttta aaacaaggtg ctacagtatt
     2881 tgaattcact gcaggctggt gtccagattg tagagtgata gaaccagatt taccggaatt
     2941 agaagcgaga tatcctatgt ttgacttcgt atcagtagac cgtgataaat ttatggatat
     3001 ttgtattgaa aatggtatta tgggtattcc aagttttcta gtatataaaa atggagaact
     3061 gcttggaagt tatattggaa aagaacgaaa atcaattgaa cagatagatg catttttagc
     3121 tcaatacgtg taatttagac tagagaaaaa cggggtaata ctcgtttttc tctgttacta
     3181 tgtgttgatt tattgtaaac tattataagg tgcgaaatta ggagtgttac atatgaatac
     3241 ctttcaaatg agagataaat taaaggaacg tttaagccat ttagacgttg attttaaatt
     3301 taatcgtgaa gaagaaactt tgcgtattta tcgaacagat aataacaaag gtatcacgat
     3361 taaacttaac gctatagtcg caaaatatga agataaaaaa gaaaaaattg tagatgaaat
     3421 tgtttattac gttgatgaag ctattgcaca aatggcagat aaaacccttg agagtatatc
     3481 atctagtcaa attatgcctg tcattagagc gactagcttt gataaaaaaa ctaaacaagg
     3541 tgttcctttt atctatgatg agcatactgc agaaacagca gtttattatg cagtcgattt
     3601 agggaaatca tatcgtctaa ttgacgaaag catgttagag gatttgaagt taactgaaca
     3661 acaaataaga gaaatgtctc tgtttaatgt tagaaaattg tcaaattcat atacgactga
     3721 tgaagtaaaa ggtaatattt tttattttat taactcaaat gacgggtatg atgcaagtag
     3781 gatactaaat actgcatttt taaatgaaat tgaggcacaa tgtcaaggcg aaatgctcgt
     3841 agcagtgcca caccaagatg tgttaattat tgcagatata cgcaataaaa caggatatga
     3901 tgtgatggca catttaacaa tggaattttt cactaaaggt ctagttccaa ttacatcatt
     3961 atcctttgga tataaacagg gtcatcttga accgatattt attttaggta aaaataataa
     4021 acaaaaaaga gatccaaacg tgattcagcg tttagaagca aatcgtcgta aatttaataa
     4081 agataaatag aaataattgg ataaggagtt ttgtcataat gaatttattt tacaatccta
     4141 aatatgtagg agatgtcgca tttttacaaa ttgaaccagt tgaaggtgaa ttaaactaca
     4201 ataaaaaagg taatgttgtt gaaattacta atgaaggtaa tgttgtaggt tataatattt
     4261 ttgaaatttc aaaagatata acaattgaag aaaaaggtca tattaaatta actgatgaac
     4321 ttgtaaatgt attccaaaag cgtatttcag aagctggttt tgattataaa ttaaatgctg
     4381 atctatcacc gaaatttgta gttggctacg ttgaaactaa agacaaacat cctgatgcag
     4441 ataaattaag tgtactaaat gtaaacgttg gaaatgacac attacaaatt gtatgtggcg
     4501 cgcctaacgt tgaagctgga cagaaagttg ttgttgctaa agtaggtgca gtgatgccta
     4561 gcggtatggt aattaaagat gctgaattac gtggtgttgc ctcaagcggt atgatttgtt
     4621 caatgaaaga attgaattta cctaatgcac ctgaagaaaa aggtattatg gtattaaatg
     4681 acagctatga aattggacaa gcattttttg aataattaag gaaggtagtg aaaatatgag
     4741 ctggtttgat aaattattcg gcgaagataa tgattcaaat gatgacttga ttcatagaaa
     4801 gaaaaaaaga cgtcaagaat cacaaaatat agataacgat catgactcat tactgcctca
     4861 aaataatgat atttatagtc gtccgagggg aaaattccgt tttcctatga gcgtagctta
     4921 tgaaaatgaa aatgttgaac aatctgcaga tactatttca gatgaaaaag aacaatacca
     4981 tcgagactat cgcaaacaaa gccacgattc tcgttcacaa aaacgacatc gccgtagaag
     5041 aaatcaaaca actgaagaac aaaattatag tgaaaaacgt gggaattcta aaatatcaca
     5101 gcaaagtata aaatataaag atcattcaca ttaccatacg aataagccag gtacatatgt
     5161 ttctgcaatt aatggtattg agaaggaaac gcacaagcca aaaacacata atatgtattc
     5221 taataataca aatcatcgtg ctaaagattc aactccagat tatcacaaag aaagtttcaa
     5281 gacttcagag gtaccgtcag ctatttttgg cacaatgaaa cctaaaaagt tagaaaatgg
     5341 tcgtatccct gtaagtaaac cttcagaaaa agttgagtca gataaacaaa aatatgataa
     5401 atatgtagct aagacgcaaa cgtctcaaaa taaacaatta gaacaagaaa aacaaaatga
     5461 tagtgttgtc aaacaaggaa ctgcatctaa atcatctgat gaaaatgtat catcaacaac
     5521 aaaatcaatg cctaattatt caaaagttga taatactatc aaaattgaaa atatttatgc
     5581 ttcacaaatt gttgaagaaa ttagacgtga acgagaacgt aaagtgcttc aaaagcgtcg
     5641 atttaaaaaa gcgttgcaac aaaagcgtga agaacataaa aacgaagagc aagatgcaat
     5701 acaacgtgca attgatgaaa tgtatgctaa acaagcggaa cgctatgttg gtgatagttc
     5761 attaaatgat gatagtgact taacagataa tagtacagat gctagtcagc ttcatacaaa
     5821 tggcatagag aatgaaactg tatcaaatga tgaaaataaa caagcgtcaa tacaaaatga
     5881 agacactaat gacactcatg tagatgaaag tccatacaat tatgaggaag ttagtttgaa
     5941 tcaagtatcg acaacaaaac aattgtcaga tgatgaagtt acggtttcga atgtaacgtc
     6001 tcaacatcaa tcagcactac aacataacgt tgaagtaaat gataaagatg aactaaaaaa
     6061 tcaatccaga ttaattgctg attcagaaga agatggagca acgaataaag aagaatattc
     6121 aggaagtcaa atcgatgatg cagaatttta tgaattaaat gatacagaag tagatgagga
     6181 tactacttca aatatcgaag ataataccaa tagaaacgcg tctgaaatgc atgtagacgc
     6241 tcctaaaacg caagagtacg cagtaactga atctcaagta aataatatcg ataaaacggt
     6301 tgataatgaa attgaattag caccgcgtca taaaaaagat gaccaaacaa acttaagtgt
     6361 caactcattg aaaacgaatg atgtgaatga taatcatgtt gtggaagatt caagcatgaa
     6421 tgaaatagaa aagaataacg cagaaattac agaaaatgtg caaaacgaag cagctgaaag
     6481 tgaacaaaat gtcgaagaga aaactattga aaacgtaaat ccaaagaaac agactgaaaa
     6541 ggtttcaact ttaagtaaaa gaccatttaa tgttgtcatg acgccatctg ataaaaagcg
     6601 tatgatggat cgtaaaaagc attcaaaagt caatgtgcct gaattaaagc ctgtacaaag
     6661 taagcaagct gtgagtgaaa gaatgcctgc gagtcaagcc acaccatcat caagatctga
     6721 ttcacaagag tcaaatacaa atgcatataa aacaaataat atgacatcaa acaatgttga
     6781 gaacaatcaa cttattggtc atgcagaaac agaaaatgat tatcaaaatg cacaacaata
     6841 ttcagagcag aaaccttctg ttgattcaac tcaaacggaa atatttgaag aaagtcaaga
     6901 tgataatcaa ttggaaaatg agcaagttga tcaatcaact tcgtcttcag tttcagaagt
     6961 aagcgacata actgaagaaa gcgaagaaac aacacatcca aacaatacta gtggacaaca
     7021 agataatgat gatcaacaaa aagatttaca gtcatcattt tcaaataaaa atgaagatac
     7081 agctaatgaa aatagacctc ggacgaacca acaagatgtt gcaacaaatc aagctgtaca
     7141 aacatctaag ccgatgattc gtaaaggccc aaatattaaa ttgccaagtg tttcattact
     7201 agaagaacca caagttattg agtcggacga ggactggatt acagataaaa agaaagaact
     7261 gaatgacgca ttattttact ttaatgtacc tgcagaagta caagatgtaa ctgaaggtcc
     7321 aagtgttaca agatttgaat tatcagttga aaaaggtgtt aaagtttcaa gaattacggc
     7381 attacaagat gacattaaaa tggcattggc agcgaaagat attcgtatag aagcgcctat
     7441 tccaggaact agtcgtgttg gtattgaagt tccgaaccaa aatccaacga cagtcaactt
     7501 acgttctatt attgaatctc caagttttaa aaatgctgaa tctaaattaa cagttgcgat
     7561 ggggtataga attaataatg aaccattact tatggatatt gctaaaacgc cacacgcact
     7621 aattgcaggt gcaactggat cagggaaatc agtttgtatc aatagtattt tgatgtcttt
     7681 actatataaa aatcatcctg aggaattaag attattactt atcgatccaa aaatggttga
     7741 attagctcct tataatggtt tgccacattt agttgcaccg gtaattacag atgtcaaagc
     7801 agctacacag agtttaaaat gggccgtaga agaaatggaa cgacgttata agttatttgc
     7861 acattaccat gtacgtaata taacagcatt taacaaaaaa gcaccatatg atgaaagaat
     7921 gccaaaaatt gtcattgtaa ttgatgagtt ggctgattta atgatgatgg ctccgcaaga
     7981 agttgaacag tctattgcta gaattgctca aaaagcgaga gcatgtggta ttcatatgtt
     8041 agtagctacg caaagaccat ctgtcaatgt aattacaggt ttaattaaag ccaacatacc
     8101 aacaagaatt gcatttatgg tatcatcaag tgtagattcg agaacgatat tagacagtgg
     8161 tggagcagaa cgcttgttag gatatggcga tatgttatat cttggtagcg gtatgaataa
     8221 accgattaga gttcaaggta catttgtttc tgatgacgaa attgatgatg ttgttgattt
     8281 tatcaaacaa caaagagaac cggactatct atttgaagaa aaagaattgt tgaaaaaaac
     8341 acaaacacaa tcacaagatg aattatttga tgatgtttgt gcatttatgg ttaatgaagg
     8401 acatatttca acatcattaa tccaaagaca tttccaaatt ggctataata gagcagcaag
     8461 aattatcgat caattagagc aactcggtta tgtttcgagt gctaatggtt caaaaccaag
     8521 ggatgtttat gttacggaag cagatttaaa taaagaataa ttatgagtaa ggagttttat
     8581 ataatgacac actatcattt tgtcggaatt aaaggttctg gcatgagttc attagcacaa
     8641 atcatgcatg atttaggaca tgaagttcaa ggatcggata ttgagaacta cgtatttaca
     8701 gaagttgctc ttagaaataa ggggataaaa atattaccat ttgatgctaa taacataaaa
     8761 gaagatatgg tagttataca aggtaatgca ttcgcgagta gccatgaaga aatagtacgt
     8821 gcacatcaat tgaaattaga tgttgtaagt tataatgatt ttttaggaca gattattgat
     8881 caatatactt cagtagctgt aactggtgca catggtaaaa cttctacaac aggtttatta
     8941 tcacatgtta tgaatggtga taaaaagact tcatttttaa ttggtgatgg cacaggtatg
     9001 ggattgcctg aaagtgatta tttcgctttt gaggcatgtg aatatagacg tcacttttta
     9061 agttataaac ctgattacgc aattatgaca aatattgatt tcgatcatcc tgattatttt
     9121 aaagatatta atgatgtttt tgatgcattc caagaaatgg cacataatgt taaaaaaggt
     9181 attattgctt ggggtgatga tgaacatcta cgtaaaattg aagcagatgt tccaatttat
     9241 tattatggat ttaaagattc ggatgacatt tatgctcaaa atattcaaat tacggataaa
     9301 ggtactgctt ttgatgtgta tgtggatggt gagttttatg atcacttcct gtctccacaa
     9361 tatggtgacc atacagtttt aaatgcatta gctgtaattg cgattagtta tttagagaag
     9421 ctagatgtta caaatattaa agaagcatta gaaacgtttg gtggtgttaa acgtcgtttc
     9481 aatgaaacta caattgcaaa tcaagttatt gtagatgatt atgcacacca tccaagagaa
     9541 attagtgcta caattgaaac agcacgaaag aaatatccac ataaagaagt tgttgcagta
     9601 tttcaaccac acactttctc tagaacacag gcatttttaa atgaatttgc agaaagttta
     9661 agtaaagcag atcgtgtatt cttatgtgaa atttttggat caattagaga aaatactggc
     9721 gcattaacga tacaagattt aattgataaa attgaaggtg catcgttaat taatgaagat
     9781 tctattaatg tattagaaca atttgataat gctgttattt tatttatggg tgcaggtgat
     9841 attcaaaaat tacaaaatgc atatttagat aaattaggca tgaaaaatgc gttttaatat
     9901 gtttataata gagtagtatg ggtatttatt attaatgaca ttattacatg ttaattagga
     9961 ggcgttttta atggattgga ttttaccaat tgctggaatt atcgctgcga ttgcattctt
    10021 aattttatgt atcggtatcg tagctgtatt aaattctgtt aagaaaaact tagattatgt
    10081 tgcaaaaaca cttgacggtg tagaaggtca agttcaaggt attactcgtg aaacaacaga
    10141 tttacttcat aaagtaaacc gtttaactga ggatatccaa ggtaaagtag atcgtttaaa
    10201 ctcagttgta gatgctgtta aaggtatcgg tgactcagta caaacgttaa acagctctgt
    10261 agatcgtgta acaaattcaa ttacacataa tatttctcaa aatgaagata aaatctcaca
    10321 agttgttcaa tggtcaaatg ttgcaatgga aattgcagac aaatggcaaa atagacacta
    10381 ccgtcgtgga agtgcaaatt acaaagctaa taatgtagca actgatgcaa atcatagcta
    10441 tacttctaga gtagataaat aattaataat taaacaaatg cacttaaatg aggttgttac
    10501 ttatttaagt gcatttgtta taggaggata tacaaatgac gcagcaacaa aatgataaaa
    10561 gaacattaaa aaataaacac acttatcaaa atgaaccact accaaaccgt aaagattttg
    10621 ttgttagttt tataactggc gcgcttgttg gttcagcttt aggtttgtat tttaaaaata
    10681 aagtttatca aaaagcagat gatttaaaag tcaaagaaca agaactgtcg caaaagtttg
    10741 aagaaagaaa aacgcaactt gaagaaacgg ttgcctatac aaaagaacgt gttgaaggat
    10801 ttttaaacaa atctaaaaat gagcaagcgg cattaaaggc acaacaagca gcgataaaag
    10861 aagaagcaag tgcaaataat ttaagtgata catcacaaga agcacaagag attcaagaag
    10921 ctaaaagaga agcacaagca gaagcggata aaagtgtggc tgtatcaaat aaagaatcaa
    10981 aagcagtggc attgaaagca caacaagcag cgataaaaga agaagcaagt gcaaataatt
    11041 tgagtgatac atcacaagag gcacaagaga ttcaagaagc taaaaaagaa gcacaagcag
    11101 aaacagataa aagtgcagct gtatcaaatg aagaaccaaa agcagtggca ttgaaagcac
    11161 aacaagcagc gataaaagaa gaagcaagtg caaataattt aagtgatata tcacaagagg
    11221 cacaagaggt tcaagaagct aaaaaagaag cacaagcaga gaaagacagt gacacattaa
    11281 ctaaagatgc aagtgcagca aaggtagaag tatcaaaacc agagtcacaa gctgaaagat
    11341 tagcaaacgc tgcaaaacag aagcaagcta aattaacacc aggttcaaaa gagagtcaat
    11401 taactgaagc gttatttgca gaaaaaccag ttgctaaaaa tgacttgaaa gaaattcctc
    11461 aattagttac taaaaagaat gatgtatcag agacagagac ggttaatata gataataaag
    11521 acactgttaa acaaaaagaa gctaaatttg aaaatggtgt tattacacgt aaagctgatg
    11581 aaaaaacaac taataataca gctgttgaca agaaatcagg taaacaatct aaaaaaacaa
    11641 caccttcaaa taaacgaaat gcatcaaaag catctacaaa taaaacttca ggtcagaaaa
    11701 agcaacataa taagaaatca tcacaaggtg caaagaaaca aagtagttca agtaagtcaa
    11761 ctcaaaagaa taatcaaact agtaataaga attcaaaaac aacaaatgct aaatcatcca
    11821 atgcatcaaa aacgccaaat gctaaagttg agaaagctaa aagtaaaata gagaaacgta
    11881 cattcaatga ctaagattac taaaatcgtt gaataatcaa tcatagcagt aagctatgta
    11941 atatattttt aaaaattgaa tttcaaaata aaaggtaggc attcaggtgc ttaccttttt
    12001 tgatatcatc agtttatttt gaaaggcaat gcgatcattt catgtattta tgttgtttga
    12061 aacatcgtta gataacaata gtgatattgc acattttaag ctgaagatgg aaaaatattc
    12121 gataatcaaa taaacaatga attttagaag gtacaatgac gttcactaat ttaaatatag
    12181 ctgaatgtgt tggtgagtga tgttcactat agatttatat taatatacaa agacaaaggt
    12241 tgttaatttt tattaagcgt taggttgaat gtatgagaat tttagattta taatagaaga
    12301 tagaaacgaa aatttttctt aaaagcagta atgttgactc aaaataagct ataataatga
    12361 cacttattta attgattaac atttgctaat aaatatcaat atagaatata actttccaat
    12421 aatgactgag aaaatcgaaa tgtcagtctc gaatcatata attagaaaat tgattatttt
    12481 ctgtcaattt agggttgaac tatacatatg atattgttag aatatttttt aacattatat
    12541 tttattgctt taaagtggaa tatacttgaa ataattagta gaggtgagta aggatgagta
    12601 ataaattaga atcatacaga agtgagattg tatcactgaa tcatcaaatt ttagacttat
    12661 tatctaaacg tggtgaacta gcacaaaaaa ttggggaaga aaaattaaaa caaggtacac
    12721 gtatttatga tccacaacgt gaaaaagaaa tgcttaacga cttaatcgat agtaacaaag
    12781 gaccattcaa cgataatact attaagcaat tatttaaaga aattttcaaa gcctctacag
    12841 atttacaaaa atctgaaaat gaaaaacatt tatatgtatc acgtaagttg aaacctgaag
    12901 atacgattgt aacatttgat aatgggggca ttattggaga cggcaataaa tcatttgtat
    12961 ttgggccatg ttcagttgaa tcatttgaac aagttgaagc tgttgctaaa aacttacatg
    13021 ctaaaggtga aaaatttatt cgtggcggtg catttaaacc acgtacatca ccatatgatt
    13081 tccaaggcct aggtgttgaa ggacttaaaa tacttaaaca gattaaagat aaatatgatt
    13141 taaatgttgt cagcgaaatc gtaaatccaa atgattttga agtggctgat gagtatttag
    13201 acgtattcca aattggtgca cgtaatatgc aaaacttcga gttattaaaa gaagctggcc
    13261 gtacgaaaaa gcctattcta ttaaaacgtg gtttatctgc tacaatcgaa gagtttgttt
    13321 atgcagctga atacattgct tcacaaggta atcaaaacat tattttatgt gaacgtggaa
    13381 tccgaactta tgaaaaggcg acacgtaaca ctttagatat ttcagcagta ccaattttaa
    13441 aacaaggtac acacttacca gtcatggtag atgttacgca tagtacaggt cgtaaagata
    13501 tcatgttacc aactgcgaaa gcagcattag cagttggtgc tgatggagtt atggctgagg
    13561 tgcatccaga tccatctgtt gcacttagtg atgcgggtca acaaatggat ttagatgaat
    13621 tccaagcatt ttatgatgaa ttaaagcctt tagctgattt atataacgct aaaaagttaa
    13681 aataatattc caaggaaact atagactact taactaatat gtcatgttga agtagaatat
    13741 tatctttgaa tcgacaattt taaacttaca gccattctaa gagtatatta cttttagagt
    13801 ggctattatt ttttgtatag aaataaaggt atact
//
LOCUS       DAMQWL010000065        13823 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.065, whole genome shotgun sequence.
ACCESSION   DAMQWL010000065 DAMQWL010000000
VERSION     DAMQWL010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 13823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13823
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.065"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..864
                     /locus_tag="PF788_001718"
     CDS             <1..864
                     /locus_tag="PF788_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000691999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HDG6303979.1"
                     /translation="NNDSKEAVNKTNMIQKKYKDNANTVQYSPKLKLYADKFIDTYMN
                     ISKDSKELESREKELLKYFPSDYKKPDEKISDTERKLNSKEFYNIKRKDKQTIIQYIV
                     NYDVNITEKKEVKVKKKKKSEKDKDEYETKTEEKQRKVNQNILINIPIKSENNKYVVV
                     EYPYFTPIPDSQLNQAKMVEDNLKDNKREDNPKAKAFIEDFFNKYASSKSDDMAYLMD
                     NPEGLEGTREVSQIREIRLYPKGDDYVAKVEILMKDKDSPLENLEHYTLDITKKDGKY
                     YVKNMTNSIGG"
     gene            869..1129
                     /locus_tag="PF788_001719"
     CDS             869..1129
                     /locus_tag="PF788_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000015642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303980.1"
                     /translation="MSGLFNFFVLGADRPSLGGVGDWISNEVGTGIGLVVLVVGIVKW
                     ASGKYGHMVILFVVGGFLFLVSKGPEQVFNAIAGVWKMIFGG"
     gene            1141..1524
                     /locus_tag="PF788_001720"
     CDS             1141..1524
                     /locus_tag="PF788_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015581841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HDG6303981.1"
                     /translation="MDKKAYNLKRTFEQPIVMYEFTDKFRINKGFRLDFWATFLIVWF
                     ILFLLFWYLLQPVIMSIGGLMFIYFTVAPYYITKYIVKLKQDGKKLFFFLWDFVIFVF
                     NVQLRKVKLSYDEEVEYHDKKITFK"
     gene            1559..4054
                     /locus_tag="PF788_001721"
     CDS             1559..4054
                     /locus_tag="PF788_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDG6303982.1"
                     /translation="MNLKAPYAGLRDNLLLTKTGEVWAYYRVRSESISTANYDAKEES
                     KKRMRYFLESIKGYQDFHFEMYDHDLDLRNKFKEISKDFDDEAFNVAEYYSKETIDVL
                     EQELQMITHNSFVMGVKIRELADDAVTLKEILKSTLSDTAERIVSNFGFDVNLDDKIL
                     DKYKTFERDLADSFLGIGGERLTENELAYIIRKPFISNATHDVQEESSRRAITDIYNA
                     VIDPTRLSVLEVENDNEKFYTTTVVVDDFPLDMEYTHLFEKAQNMPFPVECHVKAKII
                     NNEKVKKKFDRAKINHKQQAKEKQDTGDSASEDVQDNLFVLNQMEREVTGSGVFIEWV
                     FMFVIKSDDYRDCKRKAKRLMKRLKETQIYAVNPLADQLQLFYQCLHGNDLFINKYWL
                     QRTTATGIAENLFGVSQSLGTKTGFYIGRIDKFIRSVSREEAVASSRDIILFSLLLAA
                     KGIKGAVSDSPHVLITGQTGKGKSFLAKLLWIYTSFFKGQMLYWDPKSEFAEWFDRVT
                     ESKEMQEKYPLFINHLKTFKYVTLNYEDSTNYGCLDPIVFLDGIEANEMLKSVFDEIK
                     SFENYHHIETAIYQAISDTVEERENGKKVGSLNVIEKLQNNEDEHVKNAGDLLFEKTQ
                     NNILKLVFSDGTNPALNIQEKATILQVKGLDMPKADDDTSSYSTSEKNGITLMLLIGK
                     FLEKFGSRRDVQTTIFIDEGWAFSASRQGKKVGKRIKRTGRSENNSLVFITQSVKDKA
                     DDDGGNFGCHFAFDEKDEREDILKSLGLEYSKESPENMEMLKDLKKGQCIFSDFYGRV
                     GKMVVHCPFEEMTEAFRTQEDSASSKAEEKFAM"
     gene            4108..5466
                     /locus_tag="PF788_001722"
     CDS             4108..5466
                     /locus_tag="PF788_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HDG6303983.1"
                     /translation="MAMNEIALFKGVRIQPYQKYIDFMFASVLAFIFLVYRIYILFID
                     YKSVNKKLDILTLFAYFKPHLLYLLIGTAIIFVICKLIAQFLIRFKTKDLAEMIETQG
                     FHNRTVIKKTTEYIPIDYKQTEYDYYPTMFYKRGKKSFVIHIKKDGSRFQDNYLELET
                     IIEPMFNSELVEKKHIGRYLRYEFMPLKYKKRIVMNGEQESNTIFYDTKIAITHQITW
                     DFVKAPHGLVTGITGGGKTYFLFYVIRELFRRHSEVRLLDPKVSDLSFMKRVIGDDKV
                     ADTKGQILKQLREANNEMEERFRLMNDSSDYKIGNDFRNFDMRPYFIIFDEVTAFTST
                     LDKKELQEMNDYLINIIMKGRQAGVFMFLTAQRPDADVIKGNVRDQLGLRVSLGNLSN
                     DGYRMTFGQTDKEFQTIHDSDIGRGYISILGQYNEPILFDAPLMEQYDFVEDVKQILN
                     KE"
     gene            5471..7318
                     /locus_tag="PF788_001723"
     CDS             5471..7318
                     /locus_tag="PF788_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000681156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303984.1"
                     /translation="MKHKSVYLLCFLILPILLLTSVSAYAVSNPVGEPSHAVKPKIEK
                     YDLSHYRSIYSEKGDWNPFGQEEISRQINNVSDFFFSMTKILAGVTDYAIENLFQLDV
                     INDFADKIGDFVGDIYQKLLSNLALTLFIIVCFNAFIIFSVQGNAREALKRAFLIMCL
                     IGFGVGILANAGNIIRGTNNIGKDLNNIIMNSTSSIDGNIDYIHENSGMNHIRNQLFD
                     MTIYRTYLVMNYGTVDEKEIKAKGKDRIDNILKLDYDKKSEKELDDIVKDEVEKKNNK
                     YMTQGYVFQKLAISVIGFIITLFMSIVFLSISFAKLIFSTFALFLFLFLVFSWIVSFI
                     PGFELSVFSAFAKTLGYIILSACMTFLFVIVGLCIKLANSFIEPDSQNAYFLNSIFII
                     VILFVMYKKRAQIINFVSRGNISFSPSAIGAGVMNRTQERFNKIRHEQAQNKKAKREN
                     QRDEPAPPLQNDNDLRRRQQDKPMPLFINKDNQKNGNKRREQQESMNGNDVKSASVES
                     NANNYSKQPQKASQQEHQVRETRQRKDIQRSPQVVNQPLNNENHSINRKEQKSVQTAY
                     DTDVQKRQIQNATQNQQSRQSGNRNQPITRNSQSKDRLKEQKDINKHGK"
     gene            7308..8354
                     /locus_tag="PF788_001724"
     CDS             7308..8354
                     /locus_tag="PF788_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000247473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDG6303985.1"
                     /translation="MVNKKDIAKKVIGKTPIGVKLKLAKVIIILCVVAFFIFPVIIMF
                     LLAPDLNKGKDDAGCTVSGGNVSANGIDKFNENAKGGKLEGKGKEIQKIAEKNKVPVN
                     IFMAIIASESQWGKGENATRQNNPLSVMGSKSIHDSTYPTIEDGLNAGAKNLYDVYIS
                     KGLDTPKKIGPKYAPVGASNDPNNMNARWIPTVEKIMKDLGGSEAKTSCSNGKGKSIK
                     FNGKLPHWSNDDPGKGNLYTAGQCTWYAYGMRQKMGKPVSTYWHDAHKWNDRAKAEGY
                     KVDKNPEPGALFIAEQGAGGHDGHYGHVAVVIGVSDGGKTFRITEMNWEGAFKVNERT
                     LKMTDGYSFIHDKE"
     gene            8361..8951
                     /locus_tag="PF788_001725"
     CDS             8361..8951
                     /locus_tag="PF788_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000810447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303986.1"
                     /translation="MKQKIIMFTLVTVILFCAVLIGYQIPKQQVKMKQNQIEDLQEEQ
                     RILRDKNGELNKLVKRQSKTVISDEEKQIREVSSNFVKQMFEMKKDSSFKSKAPQIKP
                     LVTKDYYDTLFKDSKDKYDLYDDITVNDIHVYFDTYDPKKDSYKVFVQFDERIETDGD
                     DKIEHRQTSAQLDLVRTAEGWRIDNLKRFNLKPLGR"
     gene            9007..9363
                     /locus_tag="PF788_001726"
     CDS             9007..9363
                     /locus_tag="PF788_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystatin-like fold lipoprotein"
                     /protein_id="HDG6303987.1"
                     /translation="MRRWFVLILGLVILLSACGQKYDKEIDEVTKLEKESIQDVKNTK
                     KYKNVERSKSYYKIYNDGEVIIMTYMPFKDSNTKVSRVYKINQTSDKYEEDSNIDAEK
                     FEKDNKPVYEENNMKK"
     gene            9472..9975
                     /locus_tag="PF788_001727"
     CDS             9472..9975
                     /locus_tag="PF788_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000746376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDG6303988.1"
                     /translation="MKKRKKRKELDYKTRLAIAKYLNDGLNIIQISKILGRDDAVLYR
                     EVNKRSVDGVYNPLLAEEDAIKSRSISDEQVAKRRRLNDETKAYIEEKLSLKWSPRQI
                     ASQIEKDTGYYISYPTIYRYIRNGLVKVDVKRDMRQAGKKYNKSSEKRGKLDVGSRVI
                     KYRLKKY"
     gene            9956..10492
                     /locus_tag="PF788_001728"
     CDS             9956..10492
                     /locus_tag="PF788_001728"
                     /inference="COORDINATES: protein motif:HMM:NF033563.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HDG6303989.1"
                     /translation="MGSKSINNREEFGHYEIDTVWSVRPSTYCLLTIIERKTRYLYAS
                     RLNTRKSNVVCNEIINIMKPLLPKSITMDRGKEFALFEEIEDELNCSIYFSDLGCPYQ
                     RGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQINARPRMIFDYKSSEEMLKYHVS
                     TQNCEPILNDCVRHEPVN"
     gene            10712..11260
                     /locus_tag="PF788_001729"
                     /pseudo
     CDS             10712..11260
                     /locus_tag="PF788_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001574632.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
     gene            12208..12582
                     /locus_tag="PF788_001730"
     CDS             12208..12582
                     /locus_tag="PF788_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SarA family transcriptional regulator"
                     /protein_id="HDG6303990.1"
                     /translation="MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYIS
                     ENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRK
                     KIESLLSRVNKRITEANNEIEL"
     gene            complement(12833..13621)
                     /locus_tag="PF788_001731"
     CDS             complement(12833..13621)
                     /locus_tag="PF788_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6303991.1"
                     /translation="MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLA
                     SSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLF
                     TDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEK
                     TMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDK
                     NHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS"
BASE COUNT         5073 a         1611 c         2440 g         4699 t
ORIGIN      
        1 aataatgaca gtaaagaagc agttaataaa acgaatatga ttcaaaaaaa gtataaagat
       61 aatgcgaata cagttcagta tagtcctaaa ttaaagttat atgctgataa gtttattgat
      121 acgtatatga atatctcgaa agattcaaaa gaattggaat ctagagaaaa agaattgttg
      181 aaatattttc catcagatta taaaaaacct gatgaaaaaa tttcagatac agaacgaaaa
      241 ttgaatagta aagaatttta taatattaaa cgtaaagata aacaaacaat tatacagtat
      301 attgttaatt atgatgtgaa tattactgaa aagaaagaag ttaaagttaa gaagaaaaag
      361 aaaagtgaaa aagataaaga tgagtatgaa acaaaaacag aagaaaagca acgtaaagta
      421 aatcaaaaca ttttaataaa tatacctatt aagagtgaaa ataataagta tgttgttgtt
      481 gaatatcctt attttacgcc aatccctgat agtcaattga atcaagctaa aatggttgag
      541 gataatttga aagacaataa acgggaagac aatccgaaag caaaagcttt tattgaagat
      601 ttctttaata aatatgcttc tagtaagtct gatgatatgg cctatttaat ggataaccct
      661 gagggcttag aaggaactag agaagtttct cagataagag aaattaggtt atatccaaaa
      721 ggcgatgatt atgttgctaa agttgaaatt ttgatgaaag ataaagattc tcctttggag
      781 aatttggagc attacacatt agatataaca aaaaaagatg gtaaatatta cgttaaaaat
      841 atgactaatt ctattggagg ttaatgttat gagtggttta tttaattttt ttgttttagg
      901 tgctgaccgt ccatcacttg gtggagttgg tgactggata agtaatgaag taggtacggg
      961 tattggttta gtagtattgg ttgttggtat tgtaaaatgg gctagtggta aatatgggca
     1021 tatggttata ttatttgttg ttggtggctt tttattctta gtttctaaag gtcctgaaca
     1081 ggtatttaat gcgattgcag gtgtttggaa aatgattttt ggcggttgag gtgattccat
     1141 ttggataaaa aagcttataa tttaaagcga acttttgaac aaccgatagt tatgtatgaa
     1201 tttacagata agtttcgtat taataagggt tttcgtttag atttttgggc tacatttttg
     1261 attgtgtggt ttatattatt tttgttattt tggtatttat tacagcctgt aattatgtcg
     1321 attggtggac ttatgtttat ttactttacg gttgcacctt attatataac gaaatatatt
     1381 gttaagttaa aacaagatgg aaagaaatta tttttcttct tatgggattt tgtaatattt
     1441 gtttttaatg tgcagttaag aaaagttaaa ttaagttatg atgaagaagt agaatatcat
     1501 gataaaaaaa taacatttaa atagccccta ttggggttat ttttattgga gggatgacat
     1561 gaatttaaaa gcaccgtatg caggtttaag agataatttg ttattaacga aaactggcga
     1621 agtttgggcg tattatcgtg ttcgttctga gtctatatca acagcaaatt atgatgcaaa
     1681 agaagaatca aaaaagcgta tgcgttattt tttagagtcg attaaaggtt atcaagattt
     1741 tcattttgaa atgtatgacc acgatttaga tttgcgaaat aaatttaaag aaattagtaa
     1801 agattttgat gatgaagctt ttaatgtagc tgaatattat tcaaaagaaa ctattgacgt
     1861 attagaacaa gaattacaaa tgattacgca taattctttt gttatgggtg ttaaaatacg
     1921 tgaattagct gacgatgcag ttacacttaa agagatttta aaaagtacat tatcagatac
     1981 ggctgagcgt attgtttcga attttggttt tgatgtgaat ttagacgata aaattttaga
     2041 taagtataaa acatttgaac gagatttggc tgatagtttt ctaggtattg gaggcgagcg
     2101 tttaactgag aatgaattgg cttatattat tagaaagcct tttatttcaa atgcaacaca
     2161 tgacgtacag gaagaatctt caagaagagc tattacagat atttataatg cagtaattga
     2221 ccctactcgc ttgagtgttt tagaagttga aaatgataac gagaaatttt atacaacaac
     2281 agttgttgtt gatgattttc cgttagatat ggaatataca catttatttg agaaagctca
     2341 aaatatgcct tttccggttg aatgccatgt aaaagcaaaa atcattaata atgagaaagt
     2401 taagaaaaaa tttgaccgtg cgaaaataaa tcataaacaa caagcaaaag aaaagcaaga
     2461 tactggcgac agtgcttcgg aagatgttca agataatttg tttgtattga atcaaatgga
     2521 acgagaagtg actggctcag gtgtatttat tgagtgggta tttatgtttg taattaaaag
     2581 tgatgattat agagattgta aacgtaaagc aaagcgtttg atgaaacgat taaaggaaac
     2641 tcaaatatat gcagttaatc cattagctga ccagttacaa ttgttttatc aatgtttaca
     2701 tggtaatgat ttatttatta ataagtattg gttacaaaga acaacggcaa caggtatagc
     2761 agagaattta tttggtgtgt ctcaaagttt gggaacaaaa acgggttttt atatagggcg
     2821 tattgataaa tttatacgtt ctgtttcacg tgaggaagct gttgcaagtt caagggatat
     2881 aattttgttt agtttattgt tggccgcaaa aggtattaag ggggctgtca gtgatagtcc
     2941 gcatgtttta attactggtc aaactgggaa aggtaaatca tttttagcaa aattattatg
     3001 gatttataca tcatttttta aaggtcaaat gttgtactgg gatccaaaat ctgagtttgc
     3061 agaatggttt gacagagtaa cagaaagtaa ggaaatgcaa gaaaagtatc ccctatttat
     3121 taatcattta aaaacattta aatatgtaac attgaattat gaagattcaa ccaattatgg
     3181 ttgtctagac cctattgtat ttttagatgg tattgaagct aatgagatgt tgaaatcagt
     3241 gtttgatgaa attaaatctt ttgaaaatta tcatcatatt gaaacagcaa tttatcaagc
     3301 tatttctgat acggttgaag aacgtgaaaa tggtaaaaaa gttggttcat taaatgtaat
     3361 tgaaaaatta cagaataatg aagatgagca tgtaaaaaat gcaggcgatt tattatttga
     3421 aaaaacgcaa aacaatattt taaaacttgt ttttagtgat ggtacgaatc cagctttaaa
     3481 tattcaagaa aaagcaacta ttttacaggt taaaggttta gatatgccta aagcagatga
     3541 tgatacatca agttattcaa caagtgagaa aaatgggatt acattaatgt tattaattgg
     3601 taagttttta gagaaattcg gttctcgtag agatgttcaa acgactatat ttattgatga
     3661 gggttgggct tttagtgctt caagacaagg taaaaaagtt ggtaagcgta taaaaagaac
     3721 gggacgttct gagaataatt cacttgtatt tattacacaa tcggtaaaag ataaagcaga
     3781 tgatgatggt ggtaactttg gttgtcattt tgcatttgat gaaaaagatg aacgtgagga
     3841 tattttaaaa tctttaggct tagaatattc aaaagaatct cctgaaaaca tggagatgtt
     3901 gaaagatttg aagaaaggtc aatgtatatt cagtgatttt tatggacgtg ttggaaaaat
     3961 ggttgtacat tgtccatttg aggaaatgac tgaagcattt agaacacaag aagattctgc
     4021 aagctctaaa gctgaagaaa aatttgcgat gtaattttta gcacatacaa aattgtatgt
     4081 gctttttatt ttaaaggagt ggatttgatg gcaatgaatg aaattgcttt atttaaaggc
     4141 gtacgtatac agccttatca gaagtatatt gattttatgt ttgcaagtgt attagcattt
     4201 atttttttgg tatatcgtat atatattttg tttattgatt ataaatcagt taataaaaaa
     4261 ttggatatat tgacgttgtt tgcatatttt aaaccgcatt tattgtattt attaattggt
     4321 acagcaatta tatttgtgat atgtaagctt attgctcagt ttttaatacg ttttaaaaca
     4381 aaagatttgg ctgaaatgat tgaaacacaa ggttttcata atcgtacagt aatcaagaaa
     4441 acaactgagt atatccctat tgattataaa caaactgaat atgattatta tccaacaatg
     4501 ttttataagc gtggtaaaaa atcttttgtt attcatatta agaaagacgg ttcgaggttt
     4561 caagataatt atttagagtt agagacgatt attgaaccaa tgtttaattc tgaattagta
     4621 gaaaaaaagc atattggtcg ttatttgaga tatgaattta tgccacttaa atataaaaag
     4681 cgtattgtta tgaatggcga acaagaatca aatacaattt tttatgatac aaaaattgct
     4741 attacgcatc aaattacttg ggattttgtg aaagcacctc atggattggt tacaggtata
     4801 accggaggtg gtaaaacata ttttttattt tatgtgattc gtgagttatt ccgtagacat
     4861 tcagaagtac gtttattaga cccaaaagtt tcagatttga gctttatgaa gcgcgttatt
     4921 ggtgatgata aagttgcaga tactaaaggt caaatattaa aacaattgag agaagctaat
     4981 aatgaaatgg aagagcgttt tagattaatg aatgatagtt cggattataa aatcgggaat
     5041 gatttccgta attttgatat gcgcccctat ttcattattt ttgatgaggt aacagctttt
     5101 acttcaactt tagataaaaa agaattacaa gaaatgaatg attatttaat taatattatt
     5161 atgaaaggtc gtcaagctgg tgtatttatg tttttaacag cacaaagacc agatgcagat
     5221 gtgattaaag gtaatgtgcg tgaccaatta gggttacgtg tgtctttagg taatttgtca
     5281 aatgatggtt atcgtatgac ctttggtcaa actgataaag aatttcaaac gattcatgat
     5341 agtgatatcg gccgaggtta tatttctata cttggacaat ataatgaacc aattttattt
     5401 gatgcacctt taatggaaca atatgatttt gtggaagatg tgaaacaaat attaaataag
     5461 gagtgatttg atgaagcata aaagtgtgta tcttttatgc tttttaattt tgcctattct
     5521 gcttttaaca tctgtgagtg cttatgctgt ttctaatcca gttggagagc cctcacatgc
     5581 agttaagcca aaaattgaaa agtatgattt atcacattat cgttcaatat atagtgaaaa
     5641 aggcgactgg aatccgtttg gtcaagaaga aatttcacgt caaattaata atgtgtcaga
     5701 ttttttcttt tctatgacta agattttagc aggtgttaca gattatgcga ttgaaaattt
     5761 atttcaatta gatgttatta atgattttgc ggataaaatc ggcgattttg ttggcgatat
     5821 atatcaaaag ttattgagta atttagcatt aacattattt attattgttt gttttaacgc
     5881 atttattatt tttagtgtac aaggtaatgc aagagaagca ttaaaacgag cgtttttaat
     5941 tatgtgttta attggttttg gtgttggtat acttgcgaat gcaggtaata ttatacgtgg
     6001 tacaaacaat attggtaagg acttaaataa tataattatg aatagtacat cttctattga
     6061 tggtaatatt gattatattc atgagaattc aggtatgaat catatacgta atcaattatt
     6121 tgatatgacg atatatagaa catatttagt aatgaattat ggaactgtcg acgaaaaaga
     6181 gataaaagca aaaggtaaag accgtattga taacatttta aaacttgatt atgataaaaa
     6241 atcagaaaaa gaattagatg atattgttaa agatgaggtt gaaaagaaaa ataataaata
     6301 tatgacgcaa ggttatgtat ttcaaaagtt ggctatttca gtgattggtt ttattattac
     6361 actttttatg tcgatagtat ttttatcaat aagttttgcg aagttgattt tttctacatt
     6421 tgctttattt ttattcttat ttttagtatt cagttggata gtgagtttta taccaggatt
     6481 tgaattatct gttttctctg cgtttgcaaa aacgttaggc tatattattt taagtgcttg
     6541 tatgacattc ttatttgtga tagttggttt gtgtatcaag cttgcaaata gttttattga
     6601 accggatagt caaaatgctt attttttaaa ttcaatattt ataattgtaa tattgtttgt
     6661 aatgtataaa aaacgggctc aaattatcaa ttttgtaagt cgtggtaata ttagtttttc
     6721 tcctagtgca attggtgctg gtgtgatgaa tcgaacacaa gaacgtttta ataagattcg
     6781 tcatgaacaa gcgcaaaata agaaagctaa acgagaaaat caaagagatg aacccgcccc
     6841 accacttcaa aatgataatg atttaagaag aagacaacag gataaaccaa tgcctttatt
     6901 tataaataaa gataatcaaa aaaatggtaa taagcgcaga gaacaacaag agtcaatgaa
     6961 tggtaacgat gtaaaatctg cttctgttga atcaaatgca aataattatt ctaaacaacc
     7021 acaaaaagca tcacagcaag aacatcaagt acgagaaaca agacagcgaa aagatataca
     7081 aaggtcgcca caagtggtta atcagccatt aaataatgag aatcattcaa taaatcgtaa
     7141 agaacagaag tcagttcaaa ctgcttatga tactgatgtt caaaaacgac aaatacaaaa
     7201 tgcgacacag aatcaacaaa gtagacaatc tggaaatcgt aatcaaccta ttacgcgtaa
     7261 ttctcagtca aaagaccgtt taaaagagca aaaggatatc aataagcatg gtaaataaaa
     7321 aagatattgc taaaaaagta ataggtaaaa cgccaatagg cgttaaattg aaattagcga
     7381 aagtcatcat cattttatgt gtggtggctt tttttatatt tccagtaatt ataatgtttt
     7441 tgttagcgcc tgatttaaat aaaggtaaag atgatgctgg ttgtactgtt agtggcggta
     7501 atgtttcggc aaatggtatt gataagttta acgaaaatgc taaaggtgga aaattagagg
     7561 gtaaaggaaa agaaatacag aaaattgcag aaaaaaataa agtacctgtg aatattttta
     7621 tggccattat tgcgagtgaa tcacaatggg gtaaaggaga aaatgcgaca agacaaaata
     7681 atcctttgtc tgttatgggt tcaaaatcga ttcatgattc aacatatcca actattgaag
     7741 atggtcttaa tgcgggagct aaaaatttgt atgatgttta tatttctaaa ggtttagata
     7801 ctcctaaaaa aataggtccc aaatatgcgc ctgttggtgc gtcaaatgac cctaataata
     7861 tgaatgcccg ttggatacca acagttgaaa aaattatgaa agatttaggc ggttcagaag
     7921 ctaaaacgtc atgtagtaat ggtaaaggaa agtctataaa gtttaatggt aaattgccac
     7981 attggtcaaa tgatgaccct ggaaaaggta atttatacac tgctggtcaa tgtacttggt
     8041 atgcatacgg tatgcgtcaa aaaatgggta aacctgtatc gacttattgg catgatgcac
     8101 ataaatggaa tgatagagct aaagctgagg gttataaagt tgataaaaat ccggaacctg
     8161 gtgcattatt tattgctgaa caaggtgcag gcggtcatga tgggcattat ggtcatgtgg
     8221 ctgttgttat tggtgtaagt gatggtggta aaacatttag aataacagaa atgaattggg
     8281 aaggtgcttt taaagttaat gaacgtacat tgaaaatgac tgacggatat agttttattc
     8341 atgataagga gtgaaaataa atgaagcaaa aaattattat gtttactctt gtaacagtaa
     8401 tattattttg tgctgtttta attggttatc agattcctaa acaacaagtt aaaatgaaac
     8461 aaaatcaaat tgaagatttg caggaagaac aacgtatatt aagagataaa aatggagagt
     8521 taaataaatt agtaaagaga caatcaaaaa cagttatttc tgatgaagaa aaacaaatac
     8581 gtgaagtttc ttcaaatttt gttaaacaga tgtttgaaat gaaaaaagat tcttctttta
     8641 aatcaaaagc accacaaata aagcctttag ttacaaagga ttattacgat acattattta
     8701 aggattctaa agataaatat gatttatatg atgatataac ggttaatgat attcatgttt
     8761 attttgatac ttatgaccct aaaaaagata gttataaagt ttttgttcag ttcgacgaac
     8821 gtattgaaac agatggagat gataaaattg aacatcgtca aacatctgca caattggatt
     8881 tagttcgtac agctgaaggt tggcgtattg ataatttaaa acgtttcaat ttaaaacctc
     8941 taggacgtta gtttgtttca agacgatagc aatgatataa tttacgtaaa aaggagtgaa
     9001 tttatcatga ggcgatggtt tgtattaatt ttaggattag ttatattatt atctgcatgt
     9061 ggtcagaaat atgataaaga aattgatgaa gttacaaagt tagaaaaaga aagtattcaa
     9121 gatgtgaaaa atacaaagaa gtataaaaat gttgagcggt caaaaagtta ttataagatt
     9181 tataatgatg gtgaggttat tataatgact tatatgcctt ttaaagatag taatacaaaa
     9241 gtttcaagag tatataaaat aaatcagact agcgataaat atgaagaaga ttctaatatt
     9301 gatgctgaaa agtttgagaa agataataaa ccagtttatg aagaaaataa tatgaaaaaa
     9361 taaagaatca actccctata cgctttagcg atggtatcgg gagttgatga acatatatcc
     9421 tcttataact tattttataa ataacctttt taaaagtaaa ggaggatata catgaaaaaa
     9481 agaaaaaaac gtaaagaatt agactataaa acacgtctag ctatcgcaaa gtatttaaat
     9541 gatggtttaa acatcattca gatttctaag attttaggtc gtgatgatgc agttctttat
     9601 agagaagtaa ataagcgttc tgttgatggt gtttataatc ctttattagc tgaggaagat
     9661 gctataaaat cgcgtagtat ttcagatgaa caagttgcta aacgtagacg tttgaatgat
     9721 gaaacaaaag catatattga agaaaaactt tcattaaaat ggtctcctag acagatagca
     9781 agtcaaattg aaaaagatac agggtattat ataagttatc ctactatata tagatatatt
     9841 cgcaatggat tggtaaaagt tgatgttaag cgtgatatga gacaagcagg caagaaatat
     9901 aataagtctt ctgaaaagcg tggcaaatta gacgtagggt ctcgtgttat aaagtatcgg
     9961 ctcaaaaagt attaataatc gtgaagaatt tggacattat gaaattgata ctgtttggag
    10021 tgttagacca tcaacatatt gcttgttaac tattattgaa agaaagacaa gatatttata
    10081 tgctagtaga ttaaatacac gtaaatccaa tgtagtttgt aatgagatta taaatattat
    10141 gaaaccatta ttacccaaaa gtataactat ggatagaggt aaggagtttg ctctatttga
    10201 agaaatagaa gatgaattga attgtagtat ttattttagt gatttgggtt gtccatatca
    10261 acgtggttct attgaaaatg caaatggact tttaagacag tattatccta aaggtacgga
    10321 ttttgcaaat ataacacaaa agtcattaga tgaagctgtt aaacaaatta atgcacggcc
    10381 tcgaatgata tttgactata aatcgagtga ggaaatgcta aagtaccatg taagcacaca
    10441 aaattgtgaa cctatattaa atgactgtgt gaggcacgaa cccgtcaatt aatataggtt
    10501 aatctaagcg aatggtttac aatgagcgcg gaaggacagg acgaataaat tttgtatgta
    10561 aaatgcataa tctaaaaaga agcatactat ttaaatctgt ggtttttgac agatattact
    10621 agtaaaatgc ttctttttct tcttctgtac tcttttagta atatttatta aaaaaattta
    10681 agaaattctc atttttctat tgacacactg ccatttaatt aaagcaattg gagtattgtt
    10741 actcattgtc ggcatcgtca taatgaatca atttaacaag aataatttat tactaactga
    10801 tcaaaagtat ttactgtttt ggcttctatt aggatttatt tttggtttct ttccacctat
    10861 tcaaacgaca attaatagtg ctttagctag tcatactcat tcaccagcct ttgcatcatt
    10921 agtatcattt acaattgggt caatagcgct attgatttta accgctattt ttaatcgttc
    10981 tttaaaacta aaaacaagtc atttaaaatt cggtaaatta aagcctatct attttactgg
    11041 cggtatactt ggcatggctt ttgtaacagc taacattatc ttaatgcctc atatgggtgc
    11101 agcattaaca acacttattg ggatgtttgg ccagattcta atgggcatat tgatagatca
    11161 ctttggatta tttggttcac ctaaaatagc aatgacatcc agaaaaacta ttggtctatt
    11221 atgtattttg acaggcatta tacttttaag attattttaa attaactttt agcttatcat
    11281 tttaacttgt aattattttt aaaagtgata agctattttt ttgtggtcta aaaatcttta
    11341 gaaaagcgtt gatttgggta gtatgctttg acacaacaaa ttttaattta gcaaattcga
    11401 tagtcaactc attcttaaga cctaaattaa tgttattttt taataattta caccaaatta
    11461 atagcaaaaa ttatgttatt cgtgctaata tttcatagtt ggttattcaa ttaattaaaa
    11521 ataagtcaaa atgcacaact ttttataatt cattgagtcg agtttgaaaa ataaaagtgc
    11581 tttaatgcat gatcaattat cgtactttct attatttgtt acccgttatc aatcggaata
    11641 acgtatagac actttaacgt gctatagatt ggttttaatc actaaattaa tgtgtttttc
    11701 ttatcattaa aactgcactg agaattacta aattaaaaaa attataaaaa tttttcattt
    11761 ttagtgataa aattctgaaa aatgggtata aatagtagaa gaagttaact tggaagagtt
    11821 aagctataac aaagaatctc tttagacaca cattgaatat cgaaacattt aattgcgcta
    11881 aatcgtttca ttaaataaat taccttgtat tgtcgattaa attaaggtaa attataaaaa
    11941 atgctgatat ttttgactaa accaaatgct aacccagaaa tacaatcact gtgtctaatg
    12001 aataatttgt tttataaaca cttttttgtt tacttctcat ttttaattag ttataattaa
    12061 ctaaataata gagcattaaa tatatttaat aaaacttatt taatgcaaaa ttatgactaa
    12121 catatctata ataaataaag attagatatc aatatattat cgggcaaatg tatcgagcaa
    12181 gatgcatcaa atagggaggt tttaaacatg gcaattacaa aaatcaatga ttgctttgag
    12241 ttgttatcaa tggtcactta tgctgacaaa ttaaaaagtt taattaaaaa ggaattttca
    12301 attagctttg aagaattcgc tgtattgaca tacatcagcg aaaacaaaga gaaagaatac
    12361 tatcttaaag atattattaa tcatttaaac tacaaacaac cacaagttgt taaagcagtt
    12421 aaaattttat ctcaagaaga ttacttcgat aaaaaacgta atgagcatga tgaaagaact
    12481 gtattaattc ttgttaatgc acaacaacgt aaaaaaatcg aatcattatt gagtcgagta
    12541 aataaacgaa tcactgaagc aaacaacgaa attgaactat aattttgttt agcgcaattt
    12601 ggtgaagttt gatagatgat acattctatt aaacttcctt tttttatgct ctttttacct
    12661 aattgttaag aggttttgca ctaatggcac ttaatataag gaagatagcc gcataacgag
    12721 cagtatatat caaatacatt tcaaaaaaag ctgatttcta tcaaataatg aatagtaatc
    12781 agctttttca cattgcctaa ggactttatg ccctaggttt atatatcaca tattatgata
    12841 cgctttttaa aaattttaaa taataattca taaatgcttc tggttcttca atatgcggtg
    12901 catgtcctga atgttcgaag atttttttcg taacatttaa aaaatgcgct tccaatttaa
    12961 aatgattctt atctttaatc aaaggatcat gttccccatt aattaacaaa gtaggtacac
    13021 atgtacgttt ttttaaatac ataggttcat ctttatgcaa aattaatgaa cgaattgcca
    13081 ccgcactatc atcctcagac ttaatgctat atattctttg tttttgatac catttcatcg
    13141 tcttctcttg atttctaaac aatttagaaa ataaaagaat atacgcttca gacttattaa
    13201 aacccgctat atcatcttga tattgtatta acaattgagt aaagctgtgt attaagtcat
    13261 ctttcttcga tgcaatggta gttaatgatt ttacacgata agcatattta tctgtaaata
    13321 acttagcaac taccccacct aaatcatgtc ctagaatatg tgcctcatga atatttaact
    13381 tctccattag aatttttaaa tcctcaacgt gatcgtttaa atcgtatgat tcacttttag
    13441 aagacttgcc atgacctctt aaatcgtaag taagtacttt atatgatgat gctagttgat
    13501 gttgcaaatc ttcaaatcca gctaaattac catccaatcc atgaagtaat attataggat
    13561 cccctttacc ttcaatttga taagttaatt ggatttgagg attaattgtg actttattca
    13621 ttgtgacacc tccctcaata aactatatac ccaaccttca ttctatatac gcttccattt
    13681 tataaacaat ttttttaaat tatttataaa ttaccaaaag ttattccaac aataaaaaaa
    13741 ctattcatct caattaatac aattaatcaa gtgaatagtt ttatcatatt tataatcttg
    13801 tacgtgaaga taatctaatt gtg
//
LOCUS       DAMQWL010000066        13757 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.066, whole genome shotgun sequence.
ACCESSION   DAMQWL010000066 DAMQWL010000000
VERSION     DAMQWL010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 13757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13757
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.066"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(33..200)
                     /locus_tag="PF788_001732"
     CDS             complement(33..200)
                     /locus_tag="PF788_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6303992.1"
                     /translation="MKRIVILENVIVDNPIWLNHVDYLVKSVLLKSIKLRFQEVRKFE
                     ILVKIMNRIHI"
     gene            complement(328..831)
                     /locus_tag="PF788_001733"
     CDS             complement(328..831)
                     /locus_tag="PF788_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDG6303993.1"
                     /translation="MSKWIIVSDNHTESGVLYQIYEMHPDADVYLHLGDSEFAYDDTE
                     LSLFNRVKGNCDFYPEFENEAVAKYNDVKAFYTHGHLYQVNRTRDLLAEKGLELGCLF
                     AFYGHTHVAKYEYINGVHVINPGSISQSRSSMEETYAEVIIDDQTLHGTINFKNRHHE
                     TISHTTF"
     gene            complement(824..1411)
                     /locus_tag="PF788_001734"
     CDS             complement(824..1411)
                     /locus_tag="PF788_001734"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HDG6303994.1"
                     /translation="MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGST
                     FEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLL
                     NKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKL
                     DKTMAQLSKEQKGQISHRRNAINLLQAFLEGDKNV"
     gene            complement(1423..2223)
                     /gene="racE"
                     /locus_tag="PF788_001735"
     CDS             complement(1423..2223)
                     /gene="racE"
                     /locus_tag="PF788_001735"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDG6303995.1"
                     /translation="MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPR
                     PGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTA
                     IMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTI
                     TSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSAL
                     LTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND"
     gene            complement(2459..3274)
                     /gene="sdhB"
                     /locus_tag="PF788_001736"
     CDS             complement(2459..3274)
                     /gene="sdhB"
                     /locus_tag="PF788_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HDG6303996.1"
                     /translation="MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEI
                     PYRENLNVIACLMEIRRNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSA
                     IVDQLEQPIRLEPMNTFPVIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEK
                     KRQTAYELSKCMTCGVCLEVCPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNA
                     LMGTGGLQQCGNSQNCVNACPKGIPLTTSIAAMNRETTFHMFKSFFGSDHEVE"
     gene            complement(3274..5040)
                     /gene="sdhA"
                     /locus_tag="PF788_001737"
     CDS             complement(3274..5040)
                     /gene="sdhA"
                     /locus_tag="PF788_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HDG6303997.1"
                     /translation="MAEKHLIVVGGGLAGLMSTIKAAEKGAHVDLFSVVPVKRSHSVC
                     AQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPVKAMTEAAPKIIHLLDRMGVM
                     FNRTNEGLLDFRRFGGTLHHRTAYAGATTGQQLLYALDEQVRAYEVDGLVTKYEGWEF
                     LGIVKGDDDSARGIVAQNMTTAEIETFGSDAVIMATGGPGIIFGKTTNSMINTGSAAS
                     IVYQQGAIYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKY
                     PDYGNLVPRDIATREIFDVCINQKLGINGENMVYLDLSHKDPHELDVKLGGIIEIYEK
                     FTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIKGLFAAGECDFSQHGGNRLGANSL
                     LSAIYGGTVAGPNAIDYISNIDRSYTDMDESIFEKRKAEEQERFDKLLAMRGTENAYK
                     LHRELGEIMTANVTVVRENEKLLETDKKIVELMKRYEDIDMEDTQTWSNQAVFFTRQL
                     WNMLVLARVITIGAYNRNESRGAHYKPEFPERNDEEWLKTTMASFQGAFEKPQFTYDD
                     VDVSLIPPRKRDYTSKSKGGKK"
     gene            complement(5092..5706)
                     /locus_tag="PF788_001738"
     CDS             complement(5092..5706)
                     /locus_tag="PF788_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b558 subunit"
                     /protein_id="HDG6303998.1"
                     /translation="MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFN
                     KASNFMESLPFLIIVEFLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRV
                     SGILTFIFIGIHLWQTRLQKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFAN
                     GLWSFLVTWGGLQSPKSQRVFTWVSLIVFLVISYIGVTAIIAFM"
     gene            complement(6030..7811)
                     /gene="uvrC"
                     /locus_tag="PF788_001739"
     CDS             complement(6030..7811)
                     /gene="uvrC"
                     /locus_tag="PF788_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499646.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDG6303999.1"
                     /translation="MEDYKQRIKNKLNVVPMEPGCYLMKDRNDQVIYVGKAKKLRNRL
                     RSYFTGAHDAKTTRLVGEIRRFEFIVTSSETESLLLELNLIKQYQPRYNILLKDDKSY
                     PFIKITKEKYPRLLVTRTVKQGTGKYFGPYPNAYSAQETKKLLDRIYPYRKCDKMPDK
                     LCLYYHIGQCLGPCVYDVDLSKYAQMTKEITDFLNGEDKTILKSLEERMLTASESLDF
                     ERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGYSVDKGWMCIQVFFIRQGNMIKRD
                     TTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPRNLDKEMIQSVVDTKIVQPARG
                     PKKDMVDLAAHNAKVSLNNKFELISRDESRTIKAIEELGTQMGIQTPIRIEAFDNSNI
                     QGVDPVSAMVTFVDGKPDKKNYRKYKIKTVKGPDDYKSMREVVRRRYSRVLNEGLPLP
                     DLIIVDGGKGHMNGVIDVLQNELGLDIPVAGLQKNDKHQTSELLYGASAEIVPLKKNS
                     QAFYLLHRIQDEVHRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKM
                     KEATLEDFKNIGIPENVAKNLHEQLHK"
     gene            7977..8072
                     /locus_tag="PF788_001740"
     CDS             7977..8072
                     /locus_tag="PF788_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304000.1"
                     /translation="MLDYHLTFIDLLIPPFSSRKQYDDLSFNFLY"
     gene            complement(8135..8449)
                     /gene="trxA"
                     /locus_tag="PF788_001741"
     CDS             complement(8135..8449)
                     /gene="trxA"
                     /locus_tag="PF788_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDG6304001.1"
                     /translation="MAIVKVTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAA
                     DYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK
                     HL"
     gene            complement(8622..10970)
                     /locus_tag="PF788_001742"
     CDS             complement(8622..10970)
                     /locus_tag="PF788_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HDG6304002.1"
                     /translation="MRQKTLDVLEFEKIKSLVANETISDLGLEKVNQMMPATNFETVV
                     FQMEETDEIAQIYNKHRLPSLSGLSKVSAFIHRADIGGVLNVSELNLIKRLIQVQNQF
                     KTFYNQLVEEDEGVKYPILDDKMNQLPVLTDLFQQINETCDTYDLYDNASYELQGIRS
                     KISSTNQRIRQNLDRIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQS
                     ASGQTLYIEPSSVVEMNNQISRLRHDEAIEKERILTQLTGYVAADKDALLVAEQVMGQ
                     LDFLIAKARYSRSIKGTKPIFKEDRTVYLPKAYHPLLNRETVVANTIEFMEDIETVII
                     TGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLST
                     FSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLVMATTH
                     YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINK
                     AKTMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSKQYQQFQNYE
                     KSLIEEAKEKANQKIKAATKEADDIIKDLRQLREQKGADVKEHELIDKKKRLDDHYEA
                     KSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLEIVNDEEAIVQMGIIKMKLPIEDLE
                     KKQKEKVKPTKMVTRQNRQTIKTELDLRGYRYEDALIELDQYLDQAVLSNYEQVYIIH
                     GKGTGALQKGVQQHLKKHKSVSDFRGGMPSEGGFGVTVATLK"
     gene            complement(10980..12692)
                     /gene="polX"
                     /locus_tag="PF788_001743"
     CDS             complement(10980..12692)
                     /gene="polX"
                     /locus_tag="PF788_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HDG6304003.1"
                     /translation="MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPL
                     DEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQEEVPEGLIPLLKIQGLGSKKIA
                     KLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDRYPIDQMRR
                     LNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVK
                     EVAVGNTKVSLELAYDDETIGVDFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDE
                     KVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFDKDLSNIITIDDING
                     DIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIK
                     ALDKEYSEIDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLA
                     NACRNPYVRHIAHPTGRIIGRRDGYKPNIEQLMALAEETNTVLEINANPHRLDLSADI
                     VRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKDFIENNT
                     KLKK"
     gene            complement(12765..13286)
                     /locus_tag="PF788_001744"
     CDS             complement(12765..13286)
                     /locus_tag="PF788_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDG6304004.1"
                     /translation="MVIDFIIIIFFVYFVIVGFRRGFWLSMIHLSATIVSLWIASQFY
                     KSIVERLIVFIPYPKTTAFNTTFAFHFNHLQNRFEAIVAFLMITLFCKFILYLIIVTF
                     DKIIAYQNIHIFSRAMGMIVGVFMTIIVLHFTLYLLALYPNEALQHQLKISIVSHSLI
                     FHIPYLSAFTINL"
     gene            complement(13287..13553)
                     /gene="zapA"
                     /locus_tag="PF788_001745"
     CDS             complement(13287..13553)
                     /gene="zapA"
                     /locus_tag="PF788_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000046705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDG6304005.1"
                     /translation="MTQFKNKVNVSINDQLFTIVGEDNPEHIRYVAHLVDDKIKELGY
                     KAAGLDTSRKAILTAVNIMHEKVLLEEENRRLKQQIHKLQQREQ"
BASE COUNT         4194 a         2636 c         1909 g         5018 t
ORIGIN      
        1 tattgatata atttatgact ttagaaatcc ttttaaatat gtatacgatt catgatttta
       61 actaaaattt caaatttcct gacttcttgg aatcttaatt ttatactttt taataataca
      121 cttttaacca aataatcaac atgattcaac catatagggt tatcaacaat cacattctcc
      181 aaaattacaa ttcttttcat aacataaatg tgttattcat tccaattatc ttataaaatt
      241 gtcagaaata cttttaaaca aacattcatg acacgacctc ctagttaaat cagtctataa
      301 actaaaaaaa gccatagcta cttctattta aaaagtagta tgactgattg tttcgtgatg
      361 tcgatttttg aaattgatgg tgccatgtaa agtttgatca tcaataataa cttcagcata
      421 tgtttcttcc attgaacttc tagattgaga tatacttcca ggattaataa catgaacacc
      481 attaatatac tcatattttg ccacatgtgt atgtccataa aatgcaaaca aacaacctaa
      541 ttcaagtcct ttttcagcta ataaatctct tgttcgattg acttgatata aatgtccatg
      601 agtataaaat gctttcacgt cattatattt tgcgaccgct tcattttcaa attctgggta
      661 aaaatcacaa ttgcctttta ctctattaaa taagctaagt tccgtatcat catacgcgaa
      721 ttctgaatct cctaaatgta aatatacatc tgcatctggg tgcatttcat aaatttgata
      781 taaaacgcct gattcagtat ggttatcact cacaataatc catttagaca tttttatcac
      841 cttcaagaaa agcttgaagt aaattaatcg catttcgtct atgactaatt tgcccttttt
      901 gttcttttga aagttgagcc atggttttat ctaatttcgg tacataaaat atcggatcat
      961 atccgaaacc attttcgcca tattttccat ctgcaatttc acctgaaaca gtacctttaa
     1021 atacttttgt ttccatatca gggccactca tacttatgac acaaacaaat tgcgcacgac
     1081 gatcagttgt attaccaagc ttatttaata atttttcaat atttgcttca tcgcttttat
     1141 tttcaccagc ataacgtgca gagtatatac ctggctcacc atttaatgca aaaacttcta
     1201 gtccactgtc atcagctatg accgttttat tcaatgcttt tgcagcagct tctgatttta
     1261 atatagcatt ttcttcaaat gttgatcctg tttcttccac atcaaaatct ggtattagtt
     1321 ctgaaatacc tattacgtgg taatctggaa atattacttt aaagtcattt attttccctt
     1381 gattattcga tgcaataaca atctctttca ttaaaaatcc tcctagtcat tcactgatat
     1441 acgttccaca ttgacagata aatttaacca ctctttgata atgttagtaa tgtgagtagg
     1501 atcacctgtt gcaaaaaatc gatgatctgg atgttcagta taacttgcat gttcattact
     1561 aaatgttagc aatgcactaa cttcacgagc cgtttctaat ccagacgaaa tcactgtctt
     1621 tttaccacca aaataatcat agataggttt atagagcaat ggatagtggg tacatcctaa
     1681 aatgacagta tcagactcac tattacgcca acgtttcagt gtttgatgaa tgacaatgct
     1741 tgtaattgtt ggatcactat atctcatttg ttctacaagt ggcacaaaac ctggacaggc
     1801 aacgccatgt acctctacat gtggattgat acgtttaata tgcgtacgat atgcttcaga
     1861 tttaattgtg ccttccgttc ctagtactaa tacattttga tttctagtag tcattattgc
     1921 tgttctagca cctggttcaa ttacgccaat cactgggatt gataaggtct tttgtaaata
     1981 ttctaaagct acagcagttg ctgtattaca agcaatcacg agcattttta tatcaaattc
     2041 cattaattta cgagcgattt caactgtata ttgttttact tgttctcctg gtcttggccc
     2101 atatggacat cgtccaatat cacctaagta ataaatcgtc tcatttggca actgacgcat
     2161 aatttcttta gctactgtca aacctccgac accagagtct attacaccta ttggtttatt
     2221 catattcggt catccttact tttaatttaa tttttagttt atcataacta agcattggat
     2281 tttagtatta tgcactgtgt ttaccatttt tgtcattata atatttattt taaatcagcc
     2341 cactatcata ttgtcatgta atctgcttat taaaaaaatc ccttccaagt tattgtgtat
     2401 ctccattcaa tttaattttg aaaggaacat aacattttaa ctcaaaaggg attaattttt
     2461 attctacttc atggtctgaa ccaaagaatg atttaaacat gtggaatgtt gtttctctgt
     2521 tcattgctgc aatggatgtt gttaatggaa tacctttagg gcaagcatta acacagtttt
     2581 gtgaattacc acactgctgt aagccaccag tacccattaa tgcatttaaa cgttcatctt
     2641 tagtcataga tcctgttggg tgcaaattaa acaaacgaac ttgcgagatt gcttgtgcac
     2701 caacgaattt attattttca gtaacattag gacaaacctc taaacataca ccacatgtca
     2761 tacatttaga taattcataa gctgtttgac gttttttctc tggcatacgt ggtcccggac
     2821 ctaaatcata cgttccatca attgggatcc atgctttcat acgttttaag ttatcgaaca
     2881 ttctagaacg atcaacttgt aagtcacgga taactgggaa agtattcatt ggctctaaac
     2941 gaataggttg ttctaattga tcaacaatcg cagaacaaga ttgtcttgca cgaccattga
     3001 taaccataga acatgctcca catacttctt ctaagcagtt catatcccag acaacaggtg
     3061 ttgttttttc acctttaata ttaactgggt tacgtctaat ttccattaaa caagcaatga
     3121 cgtttaaatt ttcacgatat ggaatttcaa atgtttcttc ataaggctta gaatcacttg
     3181 tatcttgtcg tttaataatt aattttactg ttttttgttt cggtttagat tgtgtttcat
     3241 gttgtggagt gtttttcact gattgttcag tcattatttt ttaccccctt tagacttact
     3301 tgtgtaatca cgtttacgag gtggtattaa actcacatcg acgtcatcat aagtaaactg
     3361 cggtttttca aatgcgcctt ggaatgaggc cattgtcgtt tttaaccact cttcatcatt
     3421 acgctctggg aattctggtt tataatgggc accgcgtgat tcgttacggt tatatgcacc
     3481 aatcgtaata acacgtgcaa gtactaacat gttccatagt tgacgggtaa agaataccgc
     3541 ttggttactc caagtttgag tatcttccat atcaatatct tcataacgtt tcatcaattc
     3601 aacaatcttt ttatctgttt ctaacagttt ttcattttca cgaacaacag ttacatttgc
     3661 tgtcataatt tcaccaagtt cacggtgtaa tttatatgca ttttctgtac cgcgcatagc
     3721 taataattta tcaaaacgtt cttgctcttc agctttacgc ttttcaaaaa tactttcgtc
     3781 catatcagta tatgatcgat caatatttga aatataatca atcgcgtttg gacctgctac
     3841 tgtaccacca taaatcgctg ataacaatga attggcacct aagcggttac caccatgttg
     3901 agagaagtca cattctccag ctgcaaataa ccctttaata tttgtcattt gatcataatc
     3961 tacatataga ccacccattg aatagtgaac agctgggaaa atcttcattg gtactttgcg
     4021 tgggtcatca ccagtgaatt tttcataaat ctcaatgata ccacctagtt ttacatctaa
     4081 ctcatgtgga tctttatgtg acaaatcaag atataccatg ttttcgccat ttatacctaa
     4141 tttttggtta atacatacat cgaaaatttc acgcgttgcg atatcacgag gtactaagtt
     4201 accataatca ggatatttct cttctaagaa gtaccaaggc ttaccatctt tatatgtcca
     4261 aattcgtcca ccttcaccac gtgctgattc actcattagt cgcagtttat catcaccagg
     4321 gattgcagta ggatgaattt gaatgaactc accattagca taaatagcgc cttgttggta
     4381 aacaatggaa gccgctgatc ctgtattaat cattgagttt gttgttttac cgaaaataat
     4441 accagggcca cccgttgcca taataactgc atctgaacca aatgtttcaa tctcagcagt
     4501 tgtcatattt tgtgcaacga tacctcttgc actatcatcg tcacctttaa ctatgccaag
     4561 gaattcccat ccttcatact tcgtaactaa tccatctact tcatatgcac gaacttgttc
     4621 atccaatgca tataataatt gttgtccagt tgttgcccct gcatatgctg ttctgtgatg
     4681 taatgtacca ccgaaacgtc taaaatctaa tagaccttca tttgttctat tgaacattac
     4741 gcccatacgg tctaataaat gaataatttt aggtgctgcc tctgtcatcg ctttaacagg
     4801 tggttggttt gcaaggaaat cgccaccata cactgtatca tcaaagtgaa tccaaggaga
     4861 atcgccttcc cctttagtat tgaccgcacc attaatgcca ccttgggcac aaacagagtg
     4921 cgaacgcttt actggtacaa ctgagaacaa atctacatgt gcaccttttt ctgccgcttt
     4981 aattgttgac attaagcccg ctaggccacc tccgacaaca ataagatgtt tctctgccat
     5041 aaaaatttca ctcccctaaa ttttcaatct atatttgtta aatgcgatgt attacataaa
     5101 ggcaataatt gcagtaacac caatatacga aataactaaa aatacgatta atgaaaccca
     5161 tgtaaatact cgttgtgatt ttggagattg aagtccaccc caagtaacta agaatgacca
     5221 taagccattt gcaaagtgga acacaacagc aataatacaa ataatataaa atattgccca
     5281 tccaggatgt tgcaatgttt cgtgcattaa atcgtaattc acttctttgc cgtaaaatgc
     5341 tttttgtaaa cgtgtttgcc ataaatggat accaataaag ataaatgtta agataccact
     5401 cactctttgg aagaagaaca tccagtttct aaaaatcgag taatgtccaa cattttcttt
     5461 tgctgtaaat gcaatgtgta taccaaacaa accgtgatat aacaacggaa tgtatataaa
     5521 taaaaattct acaataatta gaaatggtaa tgattccata aagttagatg ccttattaaa
     5581 cgcttcagca ccttgtgttg cttggtgatt cactaataaa tgaacgacca aaaatgcacc
     5641 tattgggata atacctaata acgagtgaat acgtcttaga taaaattcat tttttgattg
     5701 agccaaaagg agtcccccct gtgaacgaat atttaattta ttgagctatt tatattaaac
     5761 gtacgcttaa ccccctaaag tgatatcgtt tctagcgttg tcattatcat taagcgaaac
     5821 attttaaaga caaatacaca ctgcacgatc accaaactgc atgtcgaaca atgtaacatt
     5881 tggattcgat atttaaaatt gcttgtgatg ataaactttc tcatttagaa aacgcttcca
     5941 cgtacattca aaaaaataac tttgttaacc atattgtaac attatttcat atattttggg
     6001 gcatgagaat gattctcacg cccagtaatt tatttatgca attgttcatg taggttcttt
     6061 gcgacgtttt caggaatacc tatattttta aaatcttcaa gtgtagcttc cttcattttc
     6121 ttgattgaac cgaatgaacg caataataat gttttacgtt tgttaccgat accatctata
     6181 tcatcaagta ttgatttcaa gcctgtcttt tgacgtgttt gtctatgaaa tgtgattgcg
     6241 aatctgtgaa cctcatcttg gatacggtgc aacaaataaa atgcctggct atttttcttc
     6301 agtggtacaa tttctgcact agcgccatat aataattcag atgtttggtg tttatcattt
     6361 ttctgcaaac ctgcaacagg gatatcaaga cctaattcgt tttgtagcac atcaataacc
     6421 ccgttcatat gtcctttacc accatctact attattaaat caggtaatgg taatccttcg
     6481 tttaaaacgc gagaatatcg tcgtcttact acttctctca ttgatttgta atcatctgga
     6541 cctttaaccg ttttgatttt atactttcta taatttttct tatctggttt accgtcgaca
     6601 aatgtaacca ttgctgacac tggatccaca ccttgaatat tagaattatc gaatgcttca
     6661 attctaattg gtgtttgaat tcccatttgt gttccaagtt cttcaatagc tttaatcgtt
     6721 ctggactcat cacgtgatat taattcaaat ttattattta aggatacttt agcgttatgt
     6781 gcagctaggt caaccatatc ttttttggga cctcgcgcgg gttgaacgat tttagtgtcc
     6841 acaacagatt gaatcatttc tttatccaaa ttacgtggta catgaacttc cttaggtaaa
     6901 atatgttggt ttaagctata aaattgtcca ataaatgtat aaaattcttc ttcttctgtt
     6961 tgctgtaatg gaatcatcgt tgtatctcgc tttatcatat taccttgtcg tataaagaaa
     7021 acttggatac acatccatcc tttatcaaca ctataaccaa agacatcacg aatcgtttta
     7081 tctgatgaca taattttttg tttgtttgtc agattttgaa tatgttgaat taaatctcta
     7141 tattctttag cccgttcaaa atcaagtgat tcacttgcag ttaacattcg ctcttctaaa
     7201 ctttttaaaa ttgttttgtc ttccccattc agaaaatcag taatttcctt cgtcatttgt
     7261 gcgtatttac tcaaatcaac gtcatataca catggtccta aacattgtcc aatatggtaa
     7321 taaagacata atttatctgg catcttatca catttgcgat atggatatat tctgtctaat
     7381 aactttttag tttcttgagc agaatatgca ttcggatacg gtccgaaata tttgccagta
     7441 ccttgtttta cagttctcgt cactagtagt ctaggatatt tctccttcgt aattttaata
     7501 aatggataac ttttatcatc ctttaataat atattatatc ttggttgata ttgtttaatc
     7561 agattcaatt ccagtaaaag tgattctgtt tcacttgacg tgacaataaa ctcaaagcga
     7621 cgtatttcac caaccagtct cgttgtttta gcatcatgag cacccgtaaa atatgatcgc
     7681 aatcgatttc ttagcttttt agctttgcca acatatatca cttgatcatt acgatctttc
     7741 attaaatagc atcctggttc cataggtacg acatttaatt tatttttaat tcgttgctta
     7801 tagtcttcca aaaatatccc cccttctaat tttaaaatga atgatgctac aaaagtgctt
     7861 caaatttatc accactaatt ctagttaata atcaacatct tcgagtatga cttttcatgc
     7921 acatcatgta atattgaaca tggttttatc aaaccaactg ctacaaatct atcagcatgc
     7981 tagattatca tttaacgttc atagatttat taatcccacc attctcaagt cgtaaacaat
     8041 atgatgactt atcattcaac tttttatatt aaaaacacaa acaaaaactg gagcaattca
     8101 ttaaagaaat gccccagtcg tcattggttg taacttataa atgtttatct aaaacttcag
     8161 ctaagttttc ttttggttgg aaaccaacaa ctttatcaac tggttgaccg tctttaaaga
     8221 cgattaatgt tggaatactc atcacttcat atttagctgc agttgatgga ttttcatcaa
     8281 catctaattt taaaatgtca gctttacctt catagtcagc tgctaattct tctaataccg
     8341 gagcgatcat tttacatgga ccacaccatg ttgcccaaaa atctactagt tgtacaccag
     8401 attctacttt tgaatcaaaa tctgcatctg ttacttttac gattgccata aatgccaatc
     8461 ctccttaatt attattatga tgttcaaatt atatcagata acatgcttca tgtatttcta
     8521 tttgctcaat ttttatgctt atttcaaata acatgtttga aatgtattct tgttgcttta
     8581 cattatttta actgcagcta tttaatttat caaattataa tttattttag tgttgcaacg
     8641 gtaacgccaa atccaccttc gcttggcata ccacctctaa agtcactaac acttttatgc
     8701 tttttcaaat gttgttgtac acctttttga agtgcacctg tacctttacc atgaatgata
     8761 taaacttgtt cgtaattact taaaacggct tgatctaaat attgatctag ttcaattaaa
     8821 gcatcctcat aacgatagcc tcgtaagtca agttcagttt taattgtttg acgattttga
     8881 cgtgtaacca ttttcgttgg cttaactttt tctttttgtt ttttctctaa atcttcaata
     8941 ggtaacttca ttttaataat tcccatttga acaattgctt cttcatcatt gacaatttct
     9001 aaaacttcac ccttttgacc gtaagataat acttttactt catcaccagc aacaatttta
     9061 tcgtattttt gcttttgtac attttgcttt atagatttcg cttcataatg atcatctaat
     9121 cgtttcttct tatcaatcaa ttcatgttct ttaacatctg cacctttttg ttcacgcaat
     9181 tgtcttaagt ctttaataat atcgtcagct tcttttgttg cagccttaat cttctgattt
     9241 gctttttctt tcgcttcctc tattagagac ttttcataat tttggaattg ttgatactgc
     9301 ttagataaat catcatgcac ttgctccgct tcttttacaa gacggtccag ttctaacctc
     9361 tgtgtctcta cacgtttgta attacgctct aatgattcaa tcatttcatt tatttctttt
     9421 tcatcagtac caatcatcgt cttagcctta ttaataatat tcaaactaag acctaacttt
     9481 ttagaaatgt caaaagcatt tgaacgaccc ggcacaccca ttaataactt atacgttgga
     9541 ctcaaagtat ctacatcaaa ttctacactc gcattcataa cgccttctcg attataacta
     9601 tatgctttaa gttcaggata gtgcgtcgtt gccattacta gagaaccaat ttttctaaca
     9661 tgatctaaaa tgctcattgc taatgcagca ccttcactcg gatctgtacc tgcacctaat
     9721 tcatcaaata aaactaaact atgtttgtct gcatgcttta aaatttcaac tatattcgtc
     9781 atatgagatg aaaaagttga taatgattgt tctattgatt gttcatctcc gatatcgcaa
     9841 tatacatttt taaatacact taactgacta ccatcaagtg tgggaatcaa caatcctgat
     9901 tgagccataa caataattaa acctaatgtt tttaatgtta cagttttacc acctgtattc
     9961 ggtcctgtaa taattaccgt ttcaatatct tccataaatt cgatggtatt agctacaaca
    10021 gtctcacgat ttaataatgg atggtatgct ttaggtaaat atacagtacg gtcctcttta
    10081 aatatcggct ttgttccttt aatacttcta ctatatctcg cttttgcgat taaaaaatct
    10141 aactgaccca tgacttgttc tgccacaagt agtgcatctt tgtccgcagc cacataacca
    10201 gttagttgcg ttaaaatgcg ttctttttca attgcttcgt catgacgtaa tcgactaatt
    10261 tgattattca tttcaacaac tgatgatggc tcaatataca atgtttgtcc tgaagcagat
    10321 tgatcatgta caatcccatt aaaatcttgt cgatattcag ctttgacagg tataacgttt
    10381 ctttcattcc taactgttac aatagcatct gataattttt tctgatttgc ttggctttta
    10441 acaatacggt ccaaattttg tctaatacgt tgattcgtgc tagaaatttt acttctaatc
    10501 ccttgcaatt cataactcgc attatcatat aaatcatacg tatcgcatgt ttcatttatt
    10561 tgttgaaaaa gatcagttaa cacaggtaat tgattcatct tgtcatctaa tattgggtat
    10621 ttaacacctt catcttcttc aaccaattga ttataaaatg tcttgaattg attttgtact
    10681 tgaattaatc tttttatcaa gttaagctct gatacattta aaacgccgcc aatatcagcg
    10741 cgatgaatga atgctgatac tttagataag ccactcaagc ttggtaaacg atgcttatta
    10801 tagatttgag caatctcatc cgtttcttcc atttgaaaaa caaccgtttc aaaattagta
    10861 gctggcatca tttgattgac cttttccaag cctaagtcac taatagtttc attggcaacg
    10921 agtgatttta ttttttcaaa ttctaagacg tctaatgttt tttgtctcat aaaatccctc
    10981 tatttcttaa gttttgtatt attttcaata aagtctttaa aagcttcacg cgataatgcg
    11041 ttaatcactc tatcttttgt tacaaatcct ttttgcgcag ttgctacgcc ataattcata
    11101 aaatctaaat gatttgtatg atgcgcatca gtgttaatag ttaatttcac atttggatat
    11161 ttacgaacga tatcagcgct cagatccagt cgatgtggat tggcattaat ttctaatact
    11221 gtattcgttt cttcagctaa tgccattaat tgttcaatat tcggtttata accatctctt
    11281 ctacctataa tacgccctgt tggatgcgct atatgtcgca cgtatggatt gcgacatgca
    11341 ttagctaatc gttccataat ttgttcttct gattggttaa agctttgatg aatagctcca
    11401 attacataat caagttgtgc taaaatttca tcatcataat ccagcgagcc atcaggtaat
    11461 atatccattt ctgtacctga ataaatatca atttcactat attctttatc taaagcctta
    11521 atttcttcgt tttgtcttaa aagtctttct acttgtaagc cattagcaac acgtaaactt
    11581 tgtgaatgat cagtaattac catgaattta taaccttttg cgatatttgc ttctaccatg
    11641 tctcgaatag aaaacgcacc atcactatac gttgtatgca tatgaatatc accattaata
    11701 tcatctattg taatgatatt acttagatct ttatcaaatt cgctaccatc ttctcgcata
    11761 gcaggtggta taaaattcac attaaaatgt tcatatatct tggcttcact atcatattga
    11821 attaatgtac catcagcttg ttcaattcca tattcactta ctttttcatc acgtgcttta
    11881 gcaagttgtc gaattcttat attatgttct tttgacccag taaaatgctg caatgtatga
    11941 taaaaagcac ttggttcaat taatcgaaaa tcgacaccaa tcgtttcatc atcatacgct
    12001 aattctaatg aaacttttgt gttccccact gcaacttctt ttactttatt gggaatattt
    12061 aataattgct gctgcactgc ttttgggtta tcggtactta ttatgaaatc taaatctttg
    12121 ctcatttctt taaaacgacg gaagcttcct gcagatgaat attgatcgat ataatttaat
    12181 gtatctatat aatcaatgat ttcttgatta agtcttctca tttgatcaat tggatatcta
    12241 tctttcttag caccaagttg tttcacagct tctaatatgt tttgttccgt tttcttagca
    12301 aatccgctta attcactaac ttttccattt tcacaagcaa cttgaagtga cgctttatca
    12361 acaatattca actctttata tagcttagca attttcttgc ttccaagtcc ttgaattttc
    12421 aaaagtggaa taagaccttc cggaacttct tcctgtaatt gctgtaaata ctgagattca
    12481 ccggtctcac ggtaatcatt gattacttct gcaacacctt taccaatgcc ttttaactcc
    12541 gttacatcag atatttcatc taatggtcgt tcatctaatt caagactttg agctgctttt
    12601 cgatacgctg atattttaaa agtattttcc ccttttaatt ccatataagt agcaatttgt
    12661 tctaatagtt tgataacatc tttttttgtc ataataacac tccataaaaa gaagaccagg
    12721 acgtatcatt aatatatacc tttgtcctga cctcttatga taatttataa attaatggtg
    12781 aaagccgata aatatgggat gtgaaaaatc aatgaatgac tcacaataga tattttaagc
    12841 tgatgttgta atgcttcgtt aggatataat gccaatagat ataacgtaaa gtgtaagaca
    12901 attatcgtca taaacacacc aactatcatt cccattgcac gactgaaaat atgaatgttt
    12961 tgatacgcta ttattttatc aaaagttacg ataattagat ataaaatgaa cttacaaaac
    13021 aatgtaatca ttaaaaaagc tacaatcgct tcaaatcgat tttgtagatg attaaaatga
    13081 aacgcaaaag ttgtattaaa tgctgttgtt ttaggatatg gaataaatac aattaatctt
    13141 tctacaatag atttgtaaaa ttgactggca atccacaatg atacaatcgt tgcactcaaa
    13201 tgtatcatag ataaccaaaa acctcgtctg aatccaacga tgacaaaata cacaaagaaa
    13261 atgattatga taaaatcaat gaccatttat tgctcacgct gctgcaattt gtgaatttgt
    13321 tgtttcaaac gtcgattttc ttcttctagt agtacttttt catgcataat attcacagca
    13381 gttagtattg cttttcttga agtatctaaa cctgctgctt tataccctaa ttcttttatt
    13441 ttatcatcaa ctaaatgtgc tacatatcgt atgtgctctg ggttatcttc cccaacaatt
    13501 gtaaaaagct gatcattaat tgatacattt accttgtttt taaactgtgt catttataat
    13561 ttctcctgat ccttttttta aaatctaaat tcacgttata aaatatgact ggatagtttg
    13621 tctgaatttg atactaatat tgttatattg caattatgat aaaacaacaa cacaatctct
    13681 atagatgact taatgttctt tttataatga aataatgtaa agaattttct attcaatact
    13741 ttatcatgtt taaattg
//
LOCUS       DAMQWL010000067        13396 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.067, whole genome shotgun sequence.
ACCESSION   DAMQWL010000067 DAMQWL010000000
VERSION     DAMQWL010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 13396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13396
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.067"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            166..1461
                     /gene="purB"
                     /locus_tag="PF788_001746"
     CDS             166..1461
                     /gene="purB"
                     /locus_tag="PF788_001746"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDG6304006.1"
                     /translation="MIERYSREEMSNIWTDQNRYEAWLEVEILACEAWSELGHIPKAD
                     VQKIRQNAKVNVERAQEIEQETRHDVVAFTRQVSETLGEERKWVHYGLTSTDVVDTAL
                     SFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTHGVHAEPTTFGVKMALWYTE
                     MQRNLQRFKQVREEIEVGKMSGAVGTFANIPPEIESYVCKHLGIGTAPVSTQTLQRDR
                     HAYYIATLALIATSLEKFAVEIRNLQKTETREVEEAFAKGQKGSSAMPHKRNPIGSEN
                     ITGISRVIRGYITTAYENVPLWHERDISHSSAERIMLPDVTIALDYALNRFTNIVDRL
                     TVFEDNMRNNIDKTFGLIFSQRVLLALINKGMVREEAYDKVQPKAMISWETKTPFREL
                     IEQDESITSVLTKEELDECFDPKHHLNQVDTIFERAGLA"
     gene            1570..1872
                     /locus_tag="PF788_001747"
     CDS             1570..1872
                     /locus_tag="PF788_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304007.1"
                     /translation="MQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLS
                     QRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETNE"
     gene            2044..2736
                     /locus_tag="PF788_001748"
     CDS             2044..2736
                     /locus_tag="PF788_001748"
                     /EC_number="2.5.1.n9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenylglyceryl phosphate synthase"
                     /protein_id="HDG6304008.1"
                     /translation="MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVT
                     EDNVIHLMSRVRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVVFHNGTLLEALK
                     TYGHSIDFEEVIFEGYVVCNADSKMAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYI
                     EYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKK
                     ALKTVKIKESSK"
     gene            2733..4925
                     /gene="pcrA"
                     /locus_tag="PF788_001749"
     CDS             2733..4925
                     /gene="pcrA"
                     /locus_tag="PF788_001749"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HDG6304009.1"
                     /translation="MNALLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYL
                     LDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADR
                     IGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNLKNELKTPADAQKE
                     ATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHV
                     DEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTI
                     FLEQNYRSTKTILNAANEVIKNNSERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIR
                     EIMKHQRNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLS
                     YLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMFDALGEADFIGLSK
                     KVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLENID
                     EFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIV
                     FIMGMEESLFPHIRAIKSEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQS
                     NMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKRGFSQRTTSTKKQVLSSDWNVGD
                     KVMHKAWGEGMVSNVNEKNGSIELDIIFKSQGPKRLLAQFAPIEKKED"
     gene            4929..6932
                     /gene="ligA"
                     /locus_tag="PF788_001750"
     CDS             4929..6932
                     /gene="ligA"
                     /locus_tag="PF788_001750"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDG6304010.1"
                     /translation="MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIK
                     IEEEHPEYKTVDSPTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQI
                     GNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPL
                     NVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFI
                     YSVNDFTDFNARSQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYD
                     IDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTA
                     ILEPVKVAGTTVSRASLHNEDLIHDRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDA
                     VTYHMPTHCPSCGHELVRIEGEVALRCINPKCQAQLVEGLIHFVSRQAMNIDGLGTKI
                     IQQLYQSELIKDVADIFYLTEEDLLPLDRMGQKKVDNLLAAIQQAKDNSLENLLFGLG
                     IRHLGVKASQVLAEKYETIDRLLTVTEAELVEIHDIGDKVAQSVVTYLENEDIRALIQ
                     KLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSS
                     VTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS"
     gene            6945..8144
                     /locus_tag="PF788_001751"
     CDS             6945..8144
                     /locus_tag="PF788_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CamS family sex pheromone protein"
                     /protein_id="HDG6304011.1"
                     /translation="MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIA
                     TDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQ
                     DGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETDPEKIAEK
                     SPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGSTFSKKLDDSEVK
                     KQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNE
                     WHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKPQRL
                     VVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEP
                     QVHIYSN"
     gene            complement(8233..9771)
                     /gene="putP"
                     /locus_tag="PF788_001752"
     CDS             complement(8233..9771)
                     /gene="putP"
                     /locus_tag="PF788_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDG6304012.1"
                     /translation="MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNL
                     SEYMLGGRSIGPYITALSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINY
                     FVVAPRLRVYTELAGDAITLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSG
                     GKLFESAFGLDYHFGLILVAFIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAM
                     MNLNGWGTFHDVAAMKPTNLNLFKGLSFIGIISLFSWGLGYFGQPHIIIRFMSIKSHK
                     MLPKARRLGISWMAVGLLGAVAVGLTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVG
                     GFLLAAILAAIMSTISSQLLVTSSSLTEDFYKLIRGEEKAKTHQKEFVMIGRLSVLVV
                     AIVAIAIAWNPNDTILNLVGNAWAGFGASFSPLVLFALYWKGLTRAGAVSGMVSGALV
                     VIVWIAWIKPLAHINEIFGLYEIIPGFIVSVIVTYVVSKLTKKPGAFVETDLNKVRDI
                     VREK"
     gene            10138..10440
                     /gene="gatC"
                     /locus_tag="PF788_001753"
     CDS             10138..10440
                     /gene="gatC"
                     /locus_tag="PF788_001753"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HDG6304013.1"
                     /translation="MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDS
                     ADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEEDA"
     gene            10442..11899
                     /gene="gatA"
                     /locus_tag="PF788_001754"
     CDS             10442..11899
                     /gene="gatA"
                     /locus_tag="PF788_001754"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HDG6304014.1"
                     /translation="MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFL
                     ALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPI
                     YESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA
                     AVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTR
                     NVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDV
                     KEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSK
                     EAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKV
                     FENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRP
                     IGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEKL"
     gene            11912..13339
                     /gene="gatB"
                     /locus_tag="PF788_001755"
     CDS             11912..13339
                     /gene="gatB"
                     /locus_tag="PF788_001755"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HDG6304015.1"
                     /translation="MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAY
                     PGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGEN
                     GYIDIEVDGETKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSP
                     KEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFN
                     YVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIV
                     PLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHG
                     ADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPE
                     LAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQ
                     IMKASKGQANPQLVNQLLKQELDKR"
BASE COUNT         5025 a         1977 c         2500 g         3894 t
ORIGIN      
        1 gtaaaaaata aaatagaatg agaatatacg gaaatttttt atacatttat aaccaattct
       61 gttaaactgt gaagagtaga gttaaaaacg aactttttgt ttatttttat taaaaaatgt
      121 tctgtttttg aaaattcgag tatacatacg ataggagtta aaaaaatgat tgaacgctat
      181 tctagagaag aaatgtctaa tatttggact gatcaaaatc gctatgaagc atggttagaa
      241 gtggaaattt tagcatgtga agcatggagt gaattaggac atataccgaa agctgacgta
      301 caaaaaattc gtcaaaacgc aaaggtaaat gtcgaacgtg cacaagaaat tgaacaagaa
      361 acgcgccatg atgttgtagc ctttactaga caagtttctg aaacgctagg tgaagaacgt
      421 aagtgggtac attatggttt aacttctact gatgttgtag atacagcttt aagtttcgtt
      481 attaaacaag caaatgacat tattgaaaaa gatttagaaa gatttatcga cgttttagct
      541 gaaaaagcaa aaaattataa atatacattg atgatgggac gtacacatgg agtgcatgca
      601 gaaccaacta catttggtgt caaaatggca ttgtggtaca cggaaatgca acgtaactta
      661 caacgtttca aacaagtaag agaagaaatt gaagtaggga aaatgagtgg tgcagtaggt
      721 acttttgcta acattcctcc tgaaatagaa agttatgtgt gtaaacattt aggtattggc
      781 acagcgcctg tatcaacgca aacattgcaa cgcgatcgac atgcatacta tattgcgaca
      841 ttagcattaa tcgcgacatc actagaaaaa tttgccgttg aaatacgtaa ccttcaaaaa
      901 accgaaacga gagaagttga agaagcattt gcaaaaggcc aaaaaggttc atctgcaatg
      961 cctcataaac gaaatccaat tggttctgaa aatatcacag gtatttcaag agtcattcgt
     1021 ggttatatta ctacagctta tgagaatgtg ccattatggc atgaaagaga tatttctcat
     1081 tcttctgctg agcgtattat gttaccagat gttacaatag cactagatta tgcattgaat
     1141 cgtttcacaa atattgtgga ccgtttaact gtatttgaag ataatatgcg taataacata
     1201 gataaaacat ttggtctgat tttctcacaa cgtgtcttat tagcattaat taataaaggt
     1261 atggttcgtg aagaagcata cgacaaagta caaccaaaag cgatgatatc ttgggaaacg
     1321 aaaacaccgt tccgtgaatt aatcgaacaa gatgagtcta ttacaagtgt tttaacaaaa
     1381 gaagaattgg atgaatgttt cgatcctaaa catcatttga atcaagttga cactattttc
     1441 gaacgcgctg gattagcata aaattaaata aagtaacgat tcagatttaa taaaatataa
     1501 atcgctacac tttaatagat taatgcgtta aaatgacata aagaataaaa ttataggggt
     1561 tgtttcgata tgcaaattga aaaattacga ggtgcagcgt tagatgaatt gtttgatgca
     1621 atactaacgt tagaaaatag agaagaatgt taccaatttt tcgatgattt gtgtactgta
     1681 aatgaaattc aatcactgtc tcaaagatta caagttgcta aaatgattaa gcaaggttat
     1741 acctatgcaa cgattgaaca agaatctgga gcatcgactg caacgatttc tagagtgaag
     1801 cgttcattac aatggggtaa tgatgcttat acaatgattt tagatcgtat gaatattgaa
     1861 acaaatgaat aataaatgaa cgataaacaa tggttatcta tctgcactaa taaggtagat
     1921 aatcattgtt ttttcacgaa aaaatttaca gagtaaaaga acttaaattt catattaagt
     1981 ctttagaact cgacacttaa aaatgctata atcatatgta tgttaaaaaa ggagtttcgg
     2041 aaaatgtatg acattaaaaa atggcgccat atttttaaat tagacccagc taaacatatt
     2101 tcagatgatg atttagatgc gatttgtatg tctcaaacag atgcaattat gattggtgga
     2161 actgatgacg ttactgaaga taatgtcatt catttaatga gcagagtaag aagataccca
     2221 ttgcctttag tacttgaaat atcaaacatc gaaagtgtaa tgcctggttt tgatttttat
     2281 tttgtaccta cagtactgaa cagtacagat gttgtatttc acaatggtac attattagaa
     2341 gcgcttaaaa catatggaca tagtatagat tttgaggaag taatatttga agggtatgtc
     2401 gtgtgcaatg ctgatagcaa aatggcaaaa cataccaaag caaatacaga tttaacaaca
     2461 gaagatttag aagcatatgc ccaaatggtc aatcatatgt atcgattacc ggttatgtat
     2521 atagagtata gtggcattta tggcgacgta tcaaaggttc aagctgtctc agaacatcta
     2581 acagaaacgc aactttttta tggtggcggt atttcctcag aacaacaagc gacagagatg
     2641 gcagctattg cagatacaat tatcgtcggt gatattattt ataaagatat taaaaaagct
     2701 ttaaaaacag taaaaataaa ggagtctagt aaatgaatgc gttattaaat catatgaata
     2761 cagagcaaag tgaagctgta aagacaacag aaggaccatt gttaattatg gcaggtgctg
     2821 gttcagggaa gacacgtgtt ttaacacata gaattgctta tttattagac gaaaaagatg
     2881 tctcaccata caatgttttg gctattactt ttacaaataa agctgcaaga gaaatgaaag
     2941 aacgtgttca aaaattagta ggtgatcaag cagaagttat ttggatgtca acattccact
     3001 caatgtgtgt tcgtatttta cgtcgtgatg cagatcgaat tggtatagaa cgcaatttta
     3061 cgataattga tcctacagac caaaaatctg ttattaaaga cgtcttaaaa aatgaaaata
     3121 ttgatagtaa aaagtttgaa cctcgtatgt ttatcggtgc gatcagtaat ttgaaaaatg
     3181 aacttaaaac acctgcagat gctcaaaaag aagccacaga ttatcactcg caaatggtag
     3241 caacggttta tagtggatat caacgccaat tgtcacgtaa tgaagcgtta gattttgatg
     3301 accttattat gacaacgatt aacttatttg agcgtgtacc agaagttcta gaatattatc
     3361 agaacaaatt ccaatatatt catgtagatg agtatcaaga tactaataaa gcacaataca
     3421 cattagttaa attattagca agtaagttta aaaacttatg tgttgtaggt gactcagatc
     3481 agtcaattta tggttggcgt ggtgctgata ttcaaaatat cttatcattt gaaaaagact
     3541 atccagaagc gaatacaatc tttttagagc aaaattatcg ttcgacgaaa acgattttaa
     3601 atgcggctaa cgaagtgatt aaaaataatt ctgaacgtaa gccaaaagga ctgtggactg
     3661 caaatacgaa tggtgagaaa attcattact atgaagcaat gacggaacgt gatgaagcgg
     3721 aatttgtaat acgagaaatt atgaagcatc aacgtaatgg taagaaatat caagatatgg
     3781 caattttata tagaacgaat gcacaatcac gtgtacttga ggaaacattc atgaaatcta
     3841 atatgccata cacaatggtt ggtggccaaa agttctatga ccgtaaagaa atcaaagatt
     3901 tattaagtta tttgcgtata attgccaata gtaatgatga cattagtttg caacgtatta
     3961 ttaatgttcc aaaaagaggt gtaggtcctt catctgttga aaaagttcaa aactatgcac
     4021 ttcaaaacaa tatcagtatg tttgatgcac ttggagaagc tgattttatc ggattgtcaa
     4081 aaaaggtgac acaagagtgt cttaattttt acgagttaat ccaaagcttg ataaaagaac
     4141 aagaattttt agaaattcat gaaatagttg atgaagtatt acaaaagtct ggctatcgag
     4201 aaatgcttga acgtgaaaat acattagaat ctcgaagtag attagaaaac atcgatgaat
     4261 ttatgtcagt accaaaagac tatgaggaaa ataccccatt agaagaacag tcattaatta
     4321 actttttaac ggatttatcg ttagtagctg atattgatga ggcagatact gaaaatggcg
     4381 taacactaat gacgatgcac tcggctaagg gccttgaatt tccaattgtc tttataatgg
     4441 ggatggaaga atctttattc ccacatatta gagcgattaa gagtgaagat gatcatgaaa
     4501 tgcaagaaga acgtcgtatt tgttatgtag caattacaag ggctgaagag gtgttatata
     4561 tcactcatgc gacatcaaga atgttatttg gtcgccctca gtcaaatatg ccatccagat
     4621 ttttaaagga aattccagaa tcactattag aaaatcattc aagtggcaaa cgacaaacga
     4681 tacaacctaa ggcaaaacct tttgctaaac gcggatttag tcaacgaaca acgtcaacga
     4741 aaaaacaagt attgtcatct gattggaatg taggtgacaa agtgatgcat aaagcctggg
     4801 gagaaggcat ggtgagtaat gtaaacgaga aaaatggctc aatcgaacta gatattatct
     4861 ttaaatcaca agggccaaaa cgtttgttag cgcaatttgc accaattgaa aaaaaggagg
     4921 attaagggat ggctgattta tcgtctcgtg tgaacgagtt acatgattta ttaaatcaat
     4981 acagttatga atactatgta gaggataatc catctgtacc agatagtgaa tatgacaaat
     5041 tacttcatga actgattaaa atagaagagg agcatcctga gtataagact gtagattctc
     5101 caacagttag agttggcggt gaagcccaag cctctttcaa taaagtcaac catgacacgc
     5161 caatgttaag tttagggaat gcatttaatg aggatgattt gagaaaattc gaccaacgca
     5221 tacgtgaaca aattggcaac gttgaatata tgtgcgaatt aaaaattgat ggcttagcag
     5281 tatcattgaa atatgttgat ggatacttcg ttcaaggttt aacacgtggt gatggaacaa
     5341 caggtgaaga tattaccgaa aatttaaaaa caattcatgc gatacctttg aaaatgaaag
     5401 aaccattaaa tgtagaagtt cgtggtgaag catatatgcc gagacgttca tttttacgat
     5461 taaatgaaga aaaagaaaaa aatgatgagc agttatttgc aaatccaaga aacgctgctg
     5521 cgggatcatt aagacagtta gattctaaat taacggcaaa acgaaagcta agcgtattta
     5581 tatatagtgt caatgatttc actgatttca atgcgcgttc gcaaagtgaa gcattagatg
     5641 agttagataa attaggtttt acaacgaata aaaatagagc gcgtgtaaat aatatcgatg
     5701 gtgttttaga gtatattgaa aaatggacaa gccaaagaga gtcattacct tatgatattg
     5761 atgggattgt tattaaggtt aatgatttag atcaacagga tgagatggga ttcacacaaa
     5821 aatctcctag atgggccatt gcttataaat ttccagctga ggaagtagta actaaattat
     5881 tagatattga attaagtatt ggacgaacag gtgtagtcac acctactgct attttagaac
     5941 cagtaaaagt agctggtaca actgtatcaa gagcatcttt gcacaatgag gatttaattc
     6001 atgacagaga tattcgaatt ggtgatagtg ttgtagtgaa aaaagcaggt gacatcatac
     6061 ctgaagttgt acgtagtatt ccagaacgta gacctgagga tgctgtcaca tatcatatgc
     6121 caacccattg tccaagttgt ggacatgaat tagtacgtat tgaaggcgaa gtagcacttc
     6181 gttgcattaa tccaaaatgc caagcacaac ttgttgaagg attgattcac tttgtatcaa
     6241 gacaagccat gaatattgat ggtttaggca ctaaaattat tcaacagctt tatcaaagcg
     6301 aattaattaa agatgttgct gatattttct atttaacaga agaagattta ttacctttag
     6361 acagaatggg gcagaaaaaa gttgataatt tattagctgc cattcaacaa gctaaggaca
     6421 actctttaga aaatttatta tttggtctag gtattaggca tttaggtgtt aaagcgagcc
     6481 aagtgttagc agaaaaatat gaaacgatag atcgattact aacggtaact gaagcggaat
     6541 tagtagaaat tcatgatata ggtgataaag tagcacaatc tgtagttact tatttagaaa
     6601 atgaagatat tcgtgcttta attcaaaaat taaaagataa acatgttaat atgatttata
     6661 aaggtatcaa aacatcagat attgaaggac atcctgaatt tagtggtaaa acgatagtac
     6721 tgactggtaa gctacatcaa atgacacgca atgaagcatc taaatggctt gcatcacaag
     6781 gtgctaaagt tacaagtagc gttactaaaa atacagatgt cgttattgct ggtgaagatg
     6841 caggttcaaa attaacaaaa gcacaaagtt taggtattga aatttggaca gagcaacaat
     6901 ttgtagataa gcaaaatgaa ttaaatagtt agaggggtat gtcgatgaag cgtacattag
     6961 tattattgat tacagctatc tttatactcg ctgcttgtgg taaccataag gatgaccagg
     7021 ctggaaaaga taatcaaaaa cataacaata gttcaaatca agtaaaagaa attgcaacgg
     7081 ataaaaatgt acaaggtgat aactatcgta cattgttacc atttaaagaa agccaggcaa
     7141 gaggactttt acaagataac atggcaaata gttataatgg cggcgacttt gaagatggtt
     7201 tattgaactt aagtaaagaa gtatttccaa cagataaata tttgtatcaa gatggtcaat
     7261 ttttggacaa gaaaacaatt aatgcctatt taaatcctaa gtatacaaaa cgtgaaatcg
     7321 ataaaatgtc tgaaaaagat aaaaaagaca agaaagcgaa tgaaaattta ggacttaatc
     7381 catcacacga aggtgaaaca gatcctgaaa agattgcaga aaaatcacca gcctatttat
     7441 ctaacatttt agagcaagat ttttatggtg gtggagatac aaaaggtaag aatattaaag
     7501 gtatgacgat tggtttagct atgaatagtg tttattacta taaaaaagaa aaagatggat
     7561 cgacttttag taaaaaacta gatgatagcg aagttaaaaa gcaaggtaaa caaatggcta
     7621 gtgagatatt atcaaggtta cgtgaaaatg atgatttaaa agatatacca attcattttg
     7681 caatttataa gcaatcaagt gaagattcaa tcacaccagg tgaatttatc actcaagcga
     7741 ctgcagaaaa gagtcaaaca aagcttaatg aatggcataa tatcaatgaa aaatcagctt
     7801 tattaccttc ttcaacagca gcagattatg atgaaaattt aaataataat ttcaagcaat
     7861 ttaatgataa tttgcaatca tatttttcta atttcacaca agcagtaggg aaagttaaat
     7921 ttgttgataa aaagccacaa cgattagtag tagatttacc aatcgattac tatggacaag
     7981 ctgaaacaat tggtattaca cagtacgtta ctgaacaagc gaataaatat ttcgataaaa
     8041 tcgataacta tgaaattcgt attaaagatg gtaaccaacc acgtgcttta attagtaaga
     8101 caaaagatga caaagaaccg caagttcata tttacagtaa ttaattgtaa attaaagata
     8161 ataaaaaggt accaatgtta gtcataattt tgattaacat tagtaccttt ttaatttgtt
     8221 aagacttatg aattattttt ctctaacgat gtcacgaact ttgtttaagt cagtttcaac
     8281 aaatgcacca ggttttttag taagtttact tacaacatat gtaacgatta cacttacaat
     8341 aaatccagga ataatttcat ataagccgaa tatttcgttg atatgtgcca atggtttaat
     8401 ccacgcaatc caaacgataa cgactaaggc acctgaaacc attccactta cagcaccggc
     8461 acgtgtcaaa cctttccagt aaagtgcaaa tagcacaagt ggactgaacg atgcaccaaa
     8521 tccggcccaa gcgttaccta ctaagtttag aattgtgtcg tttggattcc atgcaatcgc
     8581 gatggcaaca attgctacaa ctaatacaga taatcttcca atcataacaa attctttttg
     8641 gtgcgtttta gctttttctt caccacgaat taatttataa aagtcttccg ttagtgaact
     8701 agatgttaca agtaattgtg aagaaatcgt gctcataatt gcagctagaa tcgcagcaag
     8761 taagaaacca cctacaagag gatggaagag tacttgactc atcacgatga ataatgtctc
     8821 aggatcttct agtttaatat gataagcagg tacgaatgca atacctgtta aaccaacagc
     8881 cacagcgcct aataaaccaa cagccatcca gctaatacct aaacgtctag ctttaggtag
     8941 catcttgtgt gatttaatag acataaacct tataatgata tgaggttgac cgaaataacc
     9001 taatccccat gaaaatagag agataattcc tataaatgat aaccctttaa ataaatttaa
     9061 atttgtaggt ttcatagctg ctacatcatg aaacgttccc cagccgttta aattcatcat
     9121 agcaacaata gggaccataa ccatcgcaat taacataatg acaccttgga agaaatctgt
     9181 aattgataca gctaaatatc caccaaagaa agtatagaaa atgacaatga aagcaactaa
     9241 tattaaaccg aaatgataat ctaatccaaa agcactttca aatagtttac caccagatac
     9301 gaaaccagaa tgtgtatata atgtaaagaa tactacgata atcaatccag aaataatctt
     9361 taacacatta tttttatcgt ttaaacgatt tttaaagaaa tctggtaatg taattgcatc
     9421 tccagctaat tcggtataaa cacgaagtct aggagcaaca acaaagtaat ttatataagc
     9481 acctaatgtt aaaccgattg taatccacat agctgataga ccagtgctat agacagaacc
     9541 aggtagcccc ataatcatcc atccactcat atctgaagct ccagctgata atgcagtaat
     9601 atacggtcca atactacgtc cacctaacat gtactcgctt aggttaccag ttgcttgctt
     9661 gtaaccgtaa aagccaataa cgattagtat caagaagtag acggcaatca taatataagt
     9721 ttgccaattg gcatctactt gttgacttaa tgctgtcccc attgtaagca tgataaacac
     9781 tccctttatt taatttataa tttagttact tgaaaacatt atacataaag ataaatgttt
     9841 agaaaagtag gaaaattaaa tttattcttt ttgaaatact tgcataccaa tatagaaagc
     9901 gctttcgtat tttttggata tgagcaaatt tttataatta aaattgcata atcataatat
     9961 tgaattgggt tgtctaatat taaaagagtg ttgttttcat aaaaaatgat ttgataaacg
    10021 aatgataatg tttatacagt ttatatgaaa ttaaagtagc acctcataaa tacttagatt
    10081 tttaattgga aatttgatac aatttagtga tgaatgactt aaaggaggct tttattaatg
    10141 acaaaagtaa cacgtgaaga agttgagcat atcgcgaatc ttgcaagact tcaaatttct
    10201 cctgaagaaa cggaagaaat ggccaacaca ttagaaagca ttttagattt tgcaaaacaa
    10261 aatgatagcg ctgatacaga aggcgttgaa cctacatatc acgttttaga tttacaaaac
    10321 gttttacgtg aagataaagc aattaaaggt attccacaag aattagcttt gaaaaatgcc
    10381 aaagaaacag aagatggaca atttaaagtg cctacaatca tgaatgagga ggacgcgtaa
    10441 gatgagcatt cgctacgaat cggttgagaa tttattaact ttaataaaag acaaaaaaat
    10501 caaaccatct gatgttgtta aagatatata tgatgcaatt gaagagactg atccaacaat
    10561 taagtctttt ctagcgctgg ataaagaaaa tgcaatcaaa aaagcgcaag aattggatga
    10621 attacaagca aaagatcaaa tggatggcaa attatttggt attccaatgg gtataaaaga
    10681 taacattatt acaaacggat tagaaacaac atgtgcaagt aaaatgttag aaggttttgt
    10741 gccaatttac gaatctactg taatggaaaa actacataat gaaaatgccg ttttaatcgg
    10801 taaattaaat atggatgagt ttgcaatggg tggttcaaca gaaacatctt atttcaaaaa
    10861 aacagttaac ccatttgacc ataaagcagt gccaggtggt tcatcaggtg gatctgcagc
    10921 agcagttgca gctggcttag taccatttag cttaggttca gacacaggtg gttcaattag
    10981 acaaccggct gcatattgtg gcgttgtcgg tatgaaacca acatacggtc gtgtatctcg
    11041 atttggatta gttgcttttg catcttcatt agaccaaatt ggtccattga ctcgaaatgt
    11101 aaaagataat gcaatcgtat tagaagctat ttctggtgca gatgttaatg actctacaag
    11161 tgcaccagtt gatgatgtag actttacatc tgaaattggt aaagatatta aaggattaaa
    11221 agttgcatta cctaaagaat acttaggtga aggtgtagct gatgacgtaa aagaagcagt
    11281 tcaaaacgct gtagaaactt taaaatcttt aggtgctgtc gttgaggaag tatcattgcc
    11341 aaatactaaa tttggtattc catcatatta cgtgattgca tcatcagaag cttcgtcaaa
    11401 cctttctcgt tttgacggaa ttcgttatgg ttatcattct aaagaagctc attcattaga
    11461 agaattatat aaaatgtcaa gatctgaagg tttcggtaaa gaagtaaaac gtcgtatttt
    11521 cttaggtaca tttgcattaa gttcaggtta ctatgatgct tactataaaa aatctcaaaa
    11581 agttagaaca ttgattaaaa atgactttga taaagtattc gaaaattatg atgtagtagt
    11641 tggtccaaca gcgcctacaa ctgcgtttaa tttaggtgaa gaaattgatg atccattaac
    11701 aatgtatgcc aatgatttat taacaacacc agtaaactta gctggattac ctggtatttc
    11761 tgttccttgt ggacaatcaa atggccgacc aatcggttta cagttcattg gtaaaccatt
    11821 cgatgaaaaa acgttatatc gtgtcgctta tcaatatgaa acacaataca atttacatga
    11881 cgtttatgaa aaattataag gagtggaaat catgcatttt gaaacagtta taggacttga
    11941 agttcacgta gagttaaaaa cggactcaaa aatgttttct ccatcaccag cgcattttgg
    12001 agcagaacct aactcaaata caaatgttat cgacttagca tatccaggtg tcttaccagt
    12061 tgttaataag cgtgcagtag actgggcaat gcgtgctgca atggcactaa atatggaaat
    12121 cgcaacagaa tctaagtttg accgtaagaa ctatttctat ccagataatc caaaagcata
    12181 tcaaatttct caatttgatc aaccaattgg tgaaaatgga tatatcgata tcgaagtcga
    12241 cggtgaaaca aaacgaatcg gtattactcg tcttcacatg gaagaagatg ctggtaagtc
    12301 aacacataaa ggtgagtatt cattagttga cttgaaccgt caaggtacac cgctaattga
    12361 aatcgtatct gaaccagata ttcgttcacc taaagaagca tatgcatatt tagaaaaatt
    12421 gcgttcaatt attcaataca ctggtgtatc agacgttaag atggaagagg gatctttacg
    12481 ttgtgatgct aacatctctt tacgtccata tggtcaagaa aaatttggta ctaaagccga
    12541 attgaaaaac ttaaactcat ttaactatgt acgtaaaggt ttagaatatg aagaaaaacg
    12601 ccaagaagaa gaattgttaa atggtggaga aatcggacaa gaaacacgtc gatttgatga
    12661 atctacaggt aaaacaattt taatgcgtgt taaagaaggt tctgatgatt accgttactt
    12721 cccagagcct gacattgtac ctttatatat tgatgatgct tggaaagagc gtgttcgtca
    12781 gacaattcct gaattaccag atgaacgtaa agctaagtat gtaaatgaat taggtttacc
    12841 tgcatacgat gcacacgtat taacattgac taaagaaatg tcagatttct ttgaatcaac
    12901 aattgaacac ggtgcagatg ttaaattaac atctaactgg ttaatgggtg gcgtaaacga
    12961 atatttaaat aaaaatcaag tagaattatt agatactaaa ttaacaccag aaaatttagc
    13021 aggtatgatt aaacttatcg aagacggaac aatgagcagt aaaattgcga agaaagtctt
    13081 cccagagtta gcagctaaag gtggtaatgc taaacagatt atggaagata atggcttagt
    13141 tcaaatttct gatgaagcaa cacttctaaa atttgtaaat gaagcattag acaataacga
    13201 acaatcagtt gaagattaca aaaatggtaa aggcaaagct atgggcttct tagttggtca
    13261 aattatgaaa gcgtctaaag gtcaagctaa tccacaatta gtaaatcaac tattaaaaca
    13321 agaattagat aaaagataat ttaaatcatc aaactatgaa gatttaaaaa ataaaccctt
    13381 gattgctgac ttagat
//
LOCUS       DAMQWL010000068        13350 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.068, whole genome shotgun sequence.
ACCESSION   DAMQWL010000068 DAMQWL010000000
VERSION     DAMQWL010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 13350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13350
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.068"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            169..3123
                     /gene="fdhF"
                     /locus_tag="PF788_001756"
     CDS             169..3123
                     /gene="fdhF"
                     /locus_tag="PF788_001756"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HDG6304016.1"
                     /translation="MQEHLVVTLDGKDYLVEPGTNLLEFIKSQDTFVPSICYNESMGP
                     IQTCDTCTVEIDGKIERSCSTVIDRPMTVNTVNNDVKDAQKEALDRILEKHMLYCTVC
                     DYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCILCGRCVEACQDI
                     EVNETIRIDWDREHPRVIWDNDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGYMT
                     DTEPGSLAAMIDLTKKAEPGYGPLFAISDSEAEMRKERIKKTKTVCTYCGVGCSFEVW
                     TKDREILKVQPSHDSPANKIATCVKGKFSWGHINSDQRLTKPLVRKNGEFHEVEWDEA
                     LNVIADNFTAIKEKHGPDALSFISSSKATNEESYLMQKLARQVIGTNNVDNCSRYCQA
                     PATKGLFRTVGHGGDSGSIEDLEKAAMSVLIGTNTAEAHPVIASRMKRAQKLFGQKIH
                     VFDIRKHEMAERADRFYQPKPGTDLAWLSAVTKYIIDHDLHDKAFIDEWVDDFDEYYK
                     SLETFTMAFAEEATGIPESELIKFAEECAKAESVVICWAMGITQQDIGSDSSTAISNL
                     LLVTGNYRRPGTGAYPLRGHNNVQGCSDMGSMPDKITGYQSIEADDIRAKFEKEYGVK
                     LNPKAGKDNHEMVEGIHDGEVHSLYLYGEDTGIVDSNINFVQAAFEKLDFMVVQDEFL
                     TFTATYADVVLPASPSLEKDGTFTNTERRIQRLYQALEPLGDSKPDWKIFQAIANRLG
                     FDWNYKHPSEIMDEVARLTPLYAGVSYDRLEGFNSLQWPVQPDGTDEPILYLEGFNFD
                     NGKAKLFPLSFDNYFKQDEIYDIHVNNGRLLEHFHEGNMTYQTPMIKYKVPRAFVEIS
                     PELAEDRGIHEGAEVKLISETGEAVLQVHVTDRVKGKEIYIPLNNDAMENGDLGAINL
                     LTNSDVDQYTDTPSYKRTSCRLEVITKRGKSPLNPNNFRVNKKRQPQYSVQVQKKWER
                     SDYVFPGNQVDK"
     gene            3123..3596
                     /locus_tag="PF788_001757"
     CDS             3123..3596
                     /locus_tag="PF788_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1641 domain-containing protein"
                     /protein_id="HDG6304017.1"
                     /translation="MAERISSKIRRLEKSEEQIKLESLNEVTEAIAANKDSILKAIKL
                     IKTLDDAKLLDALNGAIRGRQVIINKFAVELNKDIYTGLLSNMASMVFLLGELNVSDL
                     SDFLNKVNKGLHVANQASPNAKTTIRSLLGVLKDDDMNRSLTYMLNMLKGMSREE"
     gene            3824..4057
                     /locus_tag="PF788_001758"
     CDS             3824..4057
                     /locus_tag="PF788_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304018.1"
                     /translation="MLKTSAVISNTLLVIGLVCLFMMKLVLAITFFAVSLSISLVVFN
                     MMFRDRTTMKVIVNASFLIVILAIVVAYFLLSK"
     gene            4079..4855
                     /locus_tag="PF788_001759"
     CDS             4079..4855
                     /locus_tag="PF788_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000739218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosaminidase"
                     /protein_id="HDG6304019.1"
                     /translation="MKKNFKLRISTLLLIVILVVFAVLLIVNETKLFKNDVNYSFDEA
                     VSMQQGKGIVQTKEEDGKFVEANNNEIAKAMTISHKDNDMKYMDITEKVPMSESEVNQ
                     LLKGKGILENRGKVFLEAQEKYEVNVIYLVSHALVETGNGKSELAKGIKDGKKRYYNF
                     FGIGAFDSSAVRSGKSYAEKEQWTSPDKAIIGGAKFIRNEYFENNQLNLYQMRWNPEN
                     PAQHQYASDIRWADKIAKLMDKSYKQFGIKKDDIRQTYYK"
     gene            5166..6290
                     /locus_tag="PF788_001760"
     CDS             5166..6290
                     /locus_tag="PF788_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDG6304020.1"
                     /translation="MKIAIIGAGIGGLTAAALLQEQGHTIKVFEKNESVKEIGAGIGI
                     GDNVLKKLGNHDLAKGIKNAGQILSTMTVLDDKDRLLTTVKLKSNTLNVTLPRQTLID
                     IIKSYVKDDAIFTNHEVTHIDNETDKVTIHFAEQESEAFDLCIGADGIHSKVRQSVNA
                     DSKVLYQGYTCFRGLIDDIDLKHPDCAKEYWGRKGRVGIVPLLNNQAYWFITINSKEN
                     NHKYSSFGKPHLQAYFNHYPNEVREILDKQSETGILLHNIYDLKPLKSFVYGRTILLG
                     DAAHATTPNMGQGAGQAMEDAIVLVNCFNAYDFEKALQRYDKIRVKHTAKVIKRSRKI
                     GKIAQYRSRLFVAVRNRIMKMMPNALAAGQTKFLYKSKEK"
     gene            complement(6382..7335)
                     /locus_tag="PF788_001761"
     CDS             complement(6382..7335)
                     /locus_tag="PF788_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase family protein"
                     /protein_id="HDG6304021.1"
                     /translation="MEKVYVAGAIPEVGLKLLQEHFEVEMYEGKGLVDKDTLIKGVKN
                     ATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNA
                     TADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAV
                     ARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLID
                     TEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLN
                     NVVLTPHIGNATFEARDMMSKIVANAAISAVQGEKPQFVVN"
     gene            complement(7697..8197)
                     /locus_tag="PF788_001762"
     CDS             complement(7697..8197)
                     /locus_tag="PF788_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDG6304022.1"
                     /translation="MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQT
                     TTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTV
                     NHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGN
                     YNYIHI"
     gene            complement(8434..8856)
                     /locus_tag="PF788_001763"
     CDS             complement(8434..8856)
                     /locus_tag="PF788_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HDG6304023.1"
                     /translation="MTTEMNDVTNHQPNRKSNDENIMAMLIYLLSLFTSIIGPLIIWL
                     LKKDESKLVDRAGKNYLNYTISYIIWSIVLVVITLIGVFLIATDIDFIIIIGFIITFI
                     GILSIFAFSILSFVFTIIACVKYYNGQEYIIPLTIRFI"
     gene            9104..10186
                     /locus_tag="PF788_001764"
     CDS             9104..10186
                     /locus_tag="PF788_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD/NADP octopine/nopaline dehydrogenase family
                     protein"
                     /protein_id="HDG6304024.1"
                     /translation="MKIAIVGSGNGAVTAAVDMVSKGHDVKLYCRNQSISKFQNAIEK
                     GGFDFNNEGDERFVKFTDISDDMEYVLKDAEIVQVIIPSSYIEYYADVMAEHVTDNQL
                     IFFNMAAAMGSIRFMNVLEDRHIETKPQLAEANTLTYGTRVDFENAAVDLSLNVRRIF
                     FSTYDRSCLNDCYDKVSSIYDHLVKEESLIKTNLENGNPEVHPGPTLLNVGRIDYAGE
                     FALYKEGITKHTVRLLHAIELERLNLGRRLGFELSTAKESRIERGYLERDKEDEPLNR
                     LFNTSPVFSQIPGPNHVESRYLTEDIAYGLVLWSSLGRVIDVPTPNIDAVIVIASTIL
                     ERDFFEEGLTVEEIGLDKLDLEKYLK"
     gene            10281..11681
                     /gene="nhaC"
                     /locus_tag="PF788_001765"
     CDS             10281..11681
                     /gene="nhaC"
                     /locus_tag="PF788_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDG6304025.1"
                     /translation="MMKRKPTFLESISTMIVMVIVVVTGFVFFDIPIQVLLIIASAYA
                     TWIAKRVGLTWQDLEKGIAERLNTAMPAILIILAVGIIVGSWMFSGTVPALIYYGLDL
                     LNPSYFLISAFFISAVTSVATGTAWGSASTAGIALISIGNQLGIPPGMAAGAIIAGAV
                     FGDKMSPLSDTTNLAALVTKVNIFKHIHSMMWTTIPASIIGLLVWFIAGFQFKGHSND
                     KQIQTLLSELAQIYQINIWVWVPLIVIIVCLLFKMATVPAMLISSFSAIIVGTFNHHF
                     KMTDGFKATFSGFNESMIHQSHISSSVKSLLEQGGMMSMTQILVTIFCGYAFAGIVEK
                     AGCLEVLLTTISKGIHSVGSLICITVICCIALVFAAGVASIVIIMVGVLMKDLFEKYQ
                     VSRSVLSRTLEDSSTMVLPLIPWGTSGIYYTNQLHVSVEEFFIWTVPCYLCAIIAIIY
                     GFTGIGIKKSSNSRLT"
     gene            11855..12097
                     /locus_tag="PF788_001766"
     CDS             11855..12097
                     /locus_tag="PF788_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304026.1"
                     /translation="MTKLIENLKASIFVSTLTKNLSMYSRFDMPKFGCVNGCMLFILY
                     YRVNRIGENRNFEIFTNSIFFIEIKKANKALETLLA"
     gene            complement(12114..12917)
                     /locus_tag="PF788_001767"
     CDS             complement(12114..12917)
                     /locus_tag="PF788_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDG6304027.1"
                     /translation="MKKIATATIATAGFATIAIASGNQAHASEQDNYGYNPNDPTSYS
                     YTYTIDAQGNYHYTWKGNWHPSQLNQDNGYYSYYYYNGYNNYNNYNNGYSYNNYSRYN
                     NYSNNNQSYNYNNYNSYNTNSYRTGGLGASYSTSSNNVQVTTTMAPSSNGRSISSGYT
                     SGRNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAARAGYTVNNTPKAGAIMQTTQ
                     GAYGHVAYVESVNSNGSVRVSEMNYGYGPGVVTSRTISASQAAGYNFIH"
BASE COUNT         4577 a         1885 c         2539 g         4349 t
ORIGIN      
        1 tgattgtaaa aaggcaaaat acaaaatttt acttaacaac tagtacataa agtaatacaa
       61 ttaaattaat tctatctgaa agatgtgtgg ggcatcgtta ttttaggtgg atatgagcaa
      121 tttattaaaa gtcatttacg gaaaatatat atagacgggg tgagtaatat gcaagaacat
      181 ttggtggtta cacttgatgg aaaagattat cttgtagaac caggtacgaa tttacttgaa
      241 tttattaaat cacaagatac ttttgtacct tcaatttgtt ataacgagtc gatgggacca
      301 attcaaacat gtgatacatg tactgttgag attgacggta aaattgaacg ttcatgtagt
      361 acggtgattg atcgtccaat gactgtaaat actgtgaaca atgatgtgaa agatgctcaa
      421 aaagaagcgc ttgatcgaat tttagaaaag catatgctgt attgtacagt atgtgattat
      481 aataatggtg attgtgaaat tcataatacg atggatgcat gggggcttca gcatcaaacg
      541 tatgaatata aagagaagcc atacgaaaaa gattacggcc cattttatcg ttatgatcca
      601 aatcaatgta tcttatgtgg gcgttgtgta gaagcatgtc aagatatcga agtgaatgaa
      661 actattagaa ttgattggga tcgtgaacat ccacgtgtta tttgggataa tgatgtaccg
      721 attaatgagt cttcatgtgt atcttgtggt caatgtgcga cggtatgtcc atgtaatgcc
      781 atgatggaag tgaatatgga aggtaatgcg ggttatatga ctgatacgga acctggttca
      841 ttagcagcaa tgattgattt aactaaaaaa gcagaacctg gttatggtcc actatttgca
      901 atctcagatt cagaagcaga aatgcgtaaa gagcgtatta agaaaactaa aacagtgtgt
      961 acttattgtg gtgtgggttg ttcatttgaa gtttggacta aagatagaga aattttaaaa
     1021 gtacaaccat cacatgattc tccagcaaat aaaattgcga cttgtgttaa aggtaagttt
     1081 tcatggggac atattaattc agatcaacga ttaactaaac cactagtaag gaaaaatggt
     1141 gagttccatg aagtagaatg ggatgaagct ttaaacgtca ttgcagataa ttttacagct
     1201 attaaagaaa agcatggccc agatgcacta tcattcattt cttcttctaa agcgacgaat
     1261 gaagaatcgt atttaatgca aaaattagca agacaagtta ttggcacaaa taacgttgat
     1321 aactgttcaa gatattgcca agcacctgca acaaaaggct tatttagaac ggttggacac
     1381 ggcggtgact caggtagtat tgaagattta gaaaaagcgg caatgtctgt attgataggt
     1441 actaatacag ccgaagctca tccagttatc gcatcacgca tgaaacgtgc acaaaaatta
     1501 tttggtcaaa aaatacatgt atttgatatt agaaaacatg aaatggcaga acgtgcggat
     1561 cgtttttatc aacctaaacc aggtacggat ttagcgtggt taagtgcagt gactaagtat
     1621 attattgatc atgatttaca cgataaagca tttattgatg agtgggtaga tgattttgat
     1681 gaatattaca aatcattaga aacatttaca atggcttttg ctgaagaagc aacaggtatt
     1741 cctgaatcag aattgattaa atttgctgaa gaatgtgcta aagctgaatc tgttgtaatt
     1801 tgttgggcaa tgggtattac acaacaagac attggtagtg actcaagtac agcgatttca
     1861 aacttattat tagtaacagg taattatcgt cgtcctggta ctggtgcgta tccattacgt
     1921 ggacataata atgttcaagg atgtagtgat atgggaagta tgcctgataa gattactggt
     1981 tatcaaagta ttgaagcgga tgatattcgc gctaaatttg aaaaagaata tggcgttaaa
     2041 ttgaatccaa aagctggtaa agataatcat gaaatggtag aaggtataca tgacggagaa
     2101 gtacactcat tgtacttata tggtgaagat acgggtattg tggattcaaa tattaatttt
     2161 gtacaagctg cgtttgaaaa attagatttc atggtagtcc aagatgaatt tttaacattc
     2221 acagcaacat acgcagatgt tgtattgcca gcaagtcctt cacttgaaaa agacggtact
     2281 tttacaaata ccgaacgtcg tattcaacgt ttataccaag cattagaacc tcttggtgat
     2341 tcaaaacctg actggaaaat tttccaagca attgctaata gattaggatt tgattggaat
     2401 tacaagcatc ctagtgaaat tatggatgaa gtagcacgct taacacctct atatgctggg
     2461 gtaagttatg atcgtttaga aggattcaat agtttacaat ggccagtaca acctgatggt
     2521 actgatgagc ctattctata cttagaagga ttcaattttg ataatggtaa agcaaaatta
     2581 ttcccattat catttgataa ttactttaag caagatgaaa tttatgatat tcatgtaaac
     2641 aatggtcgat tgttagagca cttccatgaa ggtaatatga cttatcaaac accaatgatt
     2701 aaatacaaag tgccacgtgc atttgttgaa atttctccag agcttgctga agatagaggc
     2761 attcatgaag gtgcagaagt taagctgatt tctgaaacag gagaagcggt attacaagtt
     2821 cacgtgacag atcgtgttaa aggtaaagaa atctatattc cattaaataa tgatgcgatg
     2881 gaaaatggag atctaggtgc aattaactta ttaactaata gtgatgttga tcaatacacg
     2941 gatacaccat cttataaacg tactagctgt cgtttggagg taattacgaa acgtggtaag
     3001 tcaccgttga accctaataa tttccgtgtc aataaaaaac gtcaaccgca gtacagtgtt
     3061 caagtacaga aaaaatggga acgttcagat tatgttttcc cgggaaatca ggtggataaa
     3121 taatggctga gagaatatct tctaaaatta gacgcttaga aaaatcagaa gaacaaatta
     3181 agttagaaag tttaaatgaa gttacagagg caattgcagc gaataaagat agtatattaa
     3241 aagcaatcaa gcttattaaa acattagatg atgcaaaact attagatgct ttaaatggtg
     3301 caattcgagg acgtcaagtc atcataaata aatttgcagt tgaacttaat aaagatattt
     3361 atacagggct attatctaat atggcttcaa tggtattttt attaggtgaa ctcaatgtat
     3421 cagatttaag cgacttccta aataaagtta ataaaggatt acacgttgcc aatcaagcga
     3481 gtccaaatgc taagacaact ataagaagtc tattgggcgt attgaaagat gacgacatga
     3541 accgtagttt aacatacatg cttaatatgc taaaaggtat gtctcgagaa gaataacatt
     3601 acaatgaaaa agtgtttcta catgcaagca gtgtaggagc acttttttta atttttgtaa
     3661 aaattaaaaa gggtgttttt gatggaataa atgaataata ttgaaaaaca aaaaaatcac
     3721 gtgctattgt gaatcaatca tcgacaggcc tatgaaacat catgtattat tatgattatg
     3781 taagttattt aaataaaaag ggtgagtgca tattaattcg agaatgttaa aaacgtcagc
     3841 tgtaatttct aatacattat tagtcatagg tttagtctgt ctatttatga tgaaattagt
     3901 gttagctatt actttttttg ctgtttcatt atcaattagt ctagttgtct ttaatatgat
     3961 gttcagagat agaacaacga tgaaagtaat cgttaacgct tcttttttaa tcgtaatatt
     4021 agcgattgta gtggcatatt ttttattgtc taagtaagaa aaatgaggtt ttgtctatat
     4081 gaagaagaat ttcaagttac gcatttcaac gctactattg atagttattt tagttgtttt
     4141 tgctgtatta ctcatcgtga atgaaactaa attgtttaaa aatgatgtga attactcttt
     4201 tgatgaggct gtttcaatgc aacaagggaa aggtattgta cagacaaaag aagaggatgg
     4261 taaatttgtt gaagcaaata ataatgaaat tgctaaagca atgactattt cacataaaga
     4321 caatgatatg aagtatatgg atatcacaga aaaagtgcca atgtcggaat ctgaagttaa
     4381 ccaattgcta aaaggtaagg ggattttaga aaatcgaggg aaagtttttc tagaagctca
     4441 agaaaaatat gaggttaatg tcatttatct tgttagccat gcattagtag aaacaggtaa
     4501 cggcaaatca gaattagcaa aaggcattaa agatgggaaa aaacgctatt acaacttttt
     4561 tggtatagga gcattcgata gtagtgctgt tcgtagtggg aaaagttatg ctgaaaagga
     4621 acaatggaca tcaccagata aggcgattat tggtggtgca aagttcattc gtaatgaata
     4681 ttttgaaaac aatcaactga atttatatca aatgcgatgg aatccagaaa atcctgcgca
     4741 acatcaatat gcgagtgaca ttcgctgggc agataaaatt gccaaattaa tggataaatc
     4801 ctataagcag tttggtataa agaaagatga tattagacaa acatattata aataagacat
     4861 cggtgcttaa aggagctgga acaatttatt gtttcgagct cctttagcgc attctgagtg
     4921 tgttagttaa atggatttta acctaacaaa aaacgctata tagcatcaaa tatgctatat
     4981 cccacatcat tgttacaaat gtacatgatg taaatgaata ttgctgtcta aatgtgcatg
     5041 taatatacaa tggtgcagat aatacactta agtccttaaa aatgaaacgt tagttccaag
     5101 agtcattttt aaacaatagt gcatgtgata aaatagaaaa gaatgaaaaa tatagaggtg
     5161 acaatatgaa gatagcaatt ataggtgcag gcatcggtgg attaacagct gctgcattat
     5221 tacaagaaca aggtcatact attaaagtct ttgaaaaaaa tgagtcagtt aaagaaattg
     5281 gcgctgggat tggtatcgga gataatgtgc ttaaaaaact aggtaatcat gacttagcta
     5341 aaggtattaa aaatgctggg caaatcttat ctacaatgac agtgttagat gacaaagatc
     5401 gcctgttaac tactgttaaa ttaaaaagta atacattgaa tgtgacgtta ccacgccaaa
     5461 cattaattga cattattaaa tcttatgtaa aagatgacgc aatatttaca aatcatgaag
     5521 tcacgcatat agataatgag acagataaag ttaccataca tttcgcggaa caagaaagtg
     5581 aagcatttga tttatgtatt ggtgctgatg gaattcattc taaagtgaga caatctgtaa
     5641 atgctgacag taaagtatta tatcaagggt atacatgctt tagaggttta attgatgata
     5701 ttgatttaaa gcatccagat tgtgcaaaag aatactgggg aagaaaagga agagtaggta
     5761 ttgttccgtt attaaataat caagcatatt ggttcattac aattaactcg aaggaaaaca
     5821 atcataaata tagttcgttt ggtaaacctc atttgcaagc atactttaat cactatccaa
     5881 atgaagttag agagatctta gacaaacaaa gtgaaacagg tatcttattg cataatattt
     5941 atgatttgaa accactcaaa tcttttgttt atggtcgtac tattttacta ggagatgcag
     6001 cacatgcgac aacgcctaat atggggcaag gtgctggaca agcaatggaa gatgctatcg
     6061 tattagtaaa ttgttttaac gcatacgact ttgaaaaagc attacagcgt tatgataaaa
     6121 tacgtgtcaa acatactgca aaagtaatta agcgttctag aaaaatcggt aaaattgccc
     6181 aatatcgtag tcgtttattt gttgcagtta gaaatcgtat tatgaaaatg atgccaaatg
     6241 cattagcagc tggacaaact aaattcttat ataaatcgaa agaaaaataa tacaacaata
     6301 tgaaaacccc cgtatgttga aacgagagct caacatatgg gggttcttgt ttttataatg
     6361 ttattataat aaattcaatt attagttaac gacaaattgt ggtttctcac cttgaacggc
     6421 actaattgca gcattagcaa caattttaga catcatgtca cgtgcttcaa atgtagcatt
     6481 accaatatgc ggtgttaata ctacattatt aagtgatttt aagtcatcgg taatatctgg
     6541 ttcaaattca tatacatcaa gtgcagcacc ttcaatttca ttatctttca atgcttgcac
     6601 tagtgcttgt tcgtgcacga ttggaccacg agaggcattg attaaatacg ccgtagattt
     6661 catcatttta aattgttctg tatcaattaa atgatgcatt ttaggattat aagcagcgtt
     6721 gatagtgata aaatctgcat tctttaatag tgtatctaaa tctacatatt ttgcaccgat
     6781 ttctcgttct ttttcttctt tgcgattagg tccagtgtat agcacatcca tgtcaaatgc
     6841 tcttgcacga cgagctactg cactaccaat ttcacctaaa ccgataatgc cgattgtttt
     6901 cccagatact tctctacctc tgaaaaataa aggtgcccat ccatcaaatc cagttgtacg
     6961 tgataattgg tccccttcaa caatacgacg cgctactgca agtactaatc caattgttaa
     7021 atcagcagtc gcgtttgttg atgctttagg tgtgtttgta acatctatac ttttttctcg
     7081 ggcatactcg atatcaatat tattaaaacc agcgccatag ttggcaatga tttttaagtc
     7141 tttaccagca tcgataacat ctttatcaac gtttgtagat aataaactaa ttaaggcagt
     7201 cgcgttttta acacctttaa ttaaagtgtc tttatcgact aatcctttac cttcatacat
     7261 ttcaacttca aaatgttctt gtaaaagttt taaacctact tctggtattg caccagcaac
     7321 ataaactttt tccataaaag atcactcctt ttatcttagt atagtagaag attagacagt
     7381 atacaactat gtcatgatgt cttgtgtatc aatgatgtaa gcgcgtactt ttgatggagg
     7441 tgatataact taggcactgt agaactatga atattgtaat gtggaaaaac tggatcaatt
     7501 aaattagata acgtagtttt aaagttaata gtattagaaa aaattaatat tttgaatatg
     7561 ggaggaaata taaataagta ggtggcaacg aaaaatagca aaaaaagagc ttctcctata
     7621 aaggaaagct caaagttttt tgatgacata tgtactagaa ttaagtttca agacaatatg
     7681 tatcatcgtg tttatattaa atatggatgt agttgtagtt acctgcttca cttgcagaaa
     7741 tagttctaga acttactgag aaaggtccgc cactataatt catttctgaa attgtaactg
     7801 aaccatcact gtttacactt tctacatatg caacgtgacc aaatggtcct tcagaagatt
     7861 gtaggatagc gcctttagaa ggtgtatgat ttactgtgaa tccagcacct tgtgcagcag
     7921 cagcccaatt attagcattt ccccaagtag aaccgatttc tccgccaact ttatcatata
     7981 cataccaagt acattgtcct gcagtgtata agttaccaga atgtgaaatt gatgatgtag
     8041 ttgtcgtagt tgtcgtagtc gttgtagttt gagtcgtgtt gtagttatag ttgttgtaat
     8101 ttgtataatt ttcagcagca tctgcatgat gtgcttgacc tactaatgct gtgccgattc
     8161 ctgctgttaa cgtagttgct gttactaatt ttttcatgaa taaagtcctc caaagttcta
     8221 tatctttttt tataaataaa acgtagcgac tgttttattc tcacatctcg aattgatgac
     8281 aatagttact ttaacaaaat taatgcttct tgtggggaat gttattgatt tgtaaaagaa
     8341 taaaaaaact ttgactaatt ttgtaataaa aattagtcaa agttacaatg agattaacag
     8401 ataattaata ggaaatattt atttgtaata tgtttaaata aatcgaattg ttaaaggtat
     8461 tatatattct tggccattat aatatttgac acacgcaata attgtgaata caaaagataa
     8521 tattgagaaa gcgaatatgg ataaaatacc gataaacgta atgatgaaac ctataataat
     8581 aatgaaatca atatctgtag caattaggaa aacgcctatt aaagtgataa cgactaaaac
     8641 gatagaccaa ataatataag aaatcgtata gttaagataa ttttttccag cacgatcaac
     8701 tagtttcgat tcatcttttt tcaataacca tattatcagt ggaccaataa tagatgtgaa
     8761 taaacttaat aaatagataa gcatcgccat aatgttctca tcattggatt tgcgattcgg
     8821 ttgatgattt gttacgtcgt tcatttcagt tgtcatatta gacactcctt tgaaaattgt
     8881 aatattatct ttaactataa caaaatataa tcaaaaataa acatgtttat taaacaatta
     8941 ttaaaaataa aaataattgg tggacgtcgg cgtttaaata ggttaattta aggttatata
     9001 tacttaacat ttataatgat gcgtaatgaa ttcgcatcat ttttatattg tcttacgtat
     9061 aatttgtttt taattttaac caaagataga aagagggttg tttatgaaaa tagcaattgt
     9121 aggatcagga aatggcgcag ttacggcagc agtagatatg gtgagcaaag gccacgatgt
     9181 taaattatat tgtcgtaatc aatctataag taagtttcaa aacgcaatcg aaaagggcgg
     9241 atttgatttt aataatgaag gtgatgaacg tttcgtaaaa ttcactgata ttagtgatga
     9301 tatggaatat gttttaaaag atgctgaaat tgttcaagtg attattccat cttcatacat
     9361 agagtattat gctgatgtaa tggcagagca tgtaactgat aatcagttga tattcttcaa
     9421 catggctgca gcaatggggt caattcgttt tatgaatgtt ttagaagata gacatattga
     9481 aacaaaacca caactagcgg aagctaatac gttgacgtat ggtacgcgtg tcgattttga
     9541 aaatgcagca gttgatttat ctctaaatgt acgtcgtatc ttcttttcaa catatgatag
     9601 aagctgtcta aatgattgtt atgacaaagt ttcaagtatt tatgatcatt tagtaaaaga
     9661 ggaaagctta attaaaacaa atcttgaaaa tggtaatcct gaagtgcatc caggaccaac
     9721 attattgaat gtcggtcgca ttgattatgc tggcgagttc gctttatata aagaaggaat
     9781 tactaaacat acagttagat tacttcatgc aatcgaatta gaacgtttga atttaggccg
     9841 tagattaggt tttgaattat caacagctaa agaatcacgt attgaacgtg gttatttaga
     9901 acgtgataaa gaagatgaac cattaaatcg tttgtttaat acaagcccag tattttcaca
     9961 aattccagga ccaaatcatg tagaaagcag atatttaact gaagatattg catatggttt
    10021 agtactatgg tcaagcttag gtcgtgttat tgatgtaccg acaccaaata tagatgcagt
    10081 aattgtaatt gcatcaacca ttttagagag agacttcttt gaggaaggct taacagttga
    10141 agaaattggt ttagataagc ttgatttaga aaaatattta aaataaatga tggcttgaag
    10201 atagaaaagg atatagcatt atgcaaaagc aataaattga agaaaagagg tttctcatca
    10261 ataagcgaag gggacgatag atgatgaaaa gaaaacccac ctttttagaa tcaatttcga
    10321 caatgattgt aatggttatt gttgttgtaa caggctttgt gttttttgat attccaattc
    10381 aagtattatt aattattgcc tcagcatatg ccacatggat tgcaaaacgt gtaggcttaa
    10441 catggcaaga tttagaaaaa ggcattgcag aacgtttaaa tactgcaatg cctgcaattt
    10501 taattatact agcggtagga attatagtag gcagttggat gttttctggc acagtgccag
    10561 ccttgattta ttatggctta gatttattga atccaagcta ttttttaata tcagcctttt
    10621 ttataagtgc tgttacatct gtagcaactg gtacagcatg gggctctgca tcaactgcag
    10681 ggattgcact tatttctatt ggtaatcaat tggggattcc tccagggatg gcagcgggtg
    10741 ctattatagc aggggctgtg tttggcgata aaatgtcacc attatcagat acaactaatt
    10801 tagcggcgct tgttactaaa gttaatatat ttaaacatat acattcgatg atgtggacga
    10861 cgatacctgc atcaatcata ggtttattag tatggtttat tgctggattt caatttaaag
    10921 ggcattcaaa tgataaacag attcaaactt tgttatcaga gcttgcacag atttatcaaa
    10981 ttaacatatg ggtctgggtt cccttaattg tgatcattgt ttgtttgcta tttaaaatgg
    11041 ctacagtgcc agctatgcta atatcaagct tttctgccat tatagtgggg acttttaatc
    11101 atcatttcaa aatgacagat ggtttcaaag caacatttag tggttttaac gaatcaatga
    11161 tacatcagtc tcatatttca tccagtgtga aaagcttgtt agaacagggt ggtatgatga
    11221 gtatgaccca aatattagta acgatatttt gcggatatgc atttgcaggt attgtagaaa
    11281 aagcaggatg tttagaagtc ttattaacta ctatttctaa aggcatccat tctgtaggaa
    11341 gtttaatatg tattactgtt atttgttgta ttgcgcttgt attcgctgca ggtgttgctt
    11401 cgattgtaat tattatggtc ggtgtgttaa tgaaagattt gttcgaaaaa taccaagtct
    11461 ctcgttccgt tttatcaaga acacttgaag actcaagtac gatggtctta cctttaatac
    11521 catggggaac atcaggtatt tactatacga atcaacttca tgtctctgtt gaagaatttt
    11581 tcatatggac agtaccatgt tatttatgcg caattatagc aattatctat ggttttacag
    11641 ggataggtat taaaaagtca tcgaattcac gtttaactta atgtgagcgt ggaatatata
    11701 taatatgttg aaacacttta atcatttata attgtagcgg ttataatttg aaaaggtttt
    11761 aacttagaat aaatatcctc tatacatata ctgaatatgt tttgtagcgg aacatgttga
    11821 tatatgtaat gtaagtttta tgtcatgatt tgtaatgact aaattaattg agaatttgaa
    11881 ggcaagtata tttgtaagta ctttaactaa aaatttatca atgtatagcc gatttgacat
    11941 gcctaaattt gggtgtgtca atggctgtat gttgtttatt ctttattaca gagtgaatcg
    12001 gattggtgaa aatcgaaatt ttgagatttt taccaattcg atttttttca tagaaattaa
    12061 aaaagccaac aaggctcttg aaaccttgtt ggcgtaaaca tagccatcac taattagtga
    12121 atgaagttat aaccagcagc ttggctagct gagattgtac gtgaagttac aacacctggg
    12181 ccataaccat agttcatttc tgaaactctt actgaaccat tgctgttaac actttcaacg
    12241 tatgcaacgt gaccgtatgc accttgagtt gtttgcataa ttgcaccagc ttttggtgta
    12301 ttgttcactg tgtaaccagc tcttgcagct gcgttagccc agttacttgc attgccccaa
    12361 gttgaaccga ttttaccacc tacacgatca aatacgtagt atgtacattg accagaagtg
    12421 tataagttac gtcctgaagt ataaccactt gagattgaac ggccatttga tgatggagcc
    12481 atagttgtag ttacttgaac attgttgctt gaagtgctgt agcttgcacc taaaccacca
    12541 gtacggtagc tgtttgtgtt gtaactatta tagttattgt agttatatga ttgattatta
    12601 tttgagtagt tgttgtaacg gctgtagtta ttgtagctat aaccgttgtt gtaattgtta
    12661 tagttattgt aaccattgta gtagtaatag ctgtagtagc cattatcttg gtttaattga
    12721 cttggatgcc agttaccttt ccatgtgtaa tggtagttac cttgtgcatc aatagtgtaa
    12781 gtatagctat atgatgttgg gtcgtttgga ttataaccgt agttatcttg ctcagaagca
    12841 tgagcttgat ttcctgatgc aattgcgatt gtagcgaatc ctgcagttgc gatagtagct
    12901 gtagcgattt tcttcatttt aaaaatatcc tcctaaaaat tttaaatcta aaatattttc
    12961 gtaatgtccg tgtgacaaaa ttaatgttat aagttatctc tcgtaattaa acgacaagaa
    13021 agactataac agaaattagc gtccttgtgt gctttgttaa cgttttgtaa ttttttgcta
    13081 atatcttgac acaatagaat tttaaaagta tagaaatttg cattttgcaa aacttataac
    13141 tacggcattc tttgtgaaaa ctgaatgttt cgaaaataag tctgttacaa atttgtaata
    13201 ttactgaaaa ttctaaatgt atattttgtg cataatatag gacttttaat cagaaaatgc
    13261 ataaaaattc gacacgaacg atcaagtttc tatgattatg aaagctttgg tatttggatg
    13321 aaaatgtata tttaatggat aaaatatcct
//
LOCUS       DAMQWL010000069        13008 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.069, whole genome shotgun sequence.
ACCESSION   DAMQWL010000069 DAMQWL010000000
VERSION     DAMQWL010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 13008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13008
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.069"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            143..1234
                     /locus_tag="PF788_001768"
     CDS             143..1234
                     /locus_tag="PF788_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001574498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDG6304028.1"
                     /translation="MIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGY
                     PYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFP
                     KMFNTNHKNAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDI
                     LNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDN
                     AVKFHIYGEGSVKDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQG
                     LSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAA
                     EFGSKARENIIEKYSTESILEKWLNLFNS"
     gene            complement(1323..1679)
                     /locus_tag="PF788_001769"
     CDS             complement(1323..1679)
                     /locus_tag="PF788_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDG6304029.1"
                     /translation="MKLGMLLIRWMLATSFLVHGTLKFVDLDGTIHFLGSLGLPPTIA
                     VLMSIGEVVGGLALIIGFLTPYVNVFYICVMLGSIFTLKLTRGYVSGYEFEIIHIVMN
                     LACISSYSWKKWLQFY"
     gene            2156..3115
                     /locus_tag="PF788_001770"
     CDS             2156..3115
                     /locus_tag="PF788_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001081330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDG6304030.1"
                     /translation="MNRNIVKLVVFMLILVVAVAGCGQKDTEEKTEMTTIKDELGTEK
                     IKKNPKRVVVLEYSFADYLAALDMKPVGIADDGSTKNITKSVRDKIGAYESVGSRPQP
                     NMEVISKLKPDLIIADVSRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVG
                     KEKEGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMG
                     IQPEVTKDKTTHVGERKGGPYIYLNNEELANINPKVMILATDGKTDKNRTKFIDPAVW
                     KSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK"
     gene            complement(3161..3292)
                     /locus_tag="PF788_001771"
     CDS             complement(3161..3292)
                     /locus_tag="PF788_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304031.1"
                     /translation="MRYVTMRQFIKRTVKTILVGYVIKFIRNKLSGKSSHPTDNKHN"
     gene            complement(3356..3571)
                     /locus_tag="PF788_001772"
     CDS             complement(3356..3571)
                     /locus_tag="PF788_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000867358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HDG6304032.1"
                     /translation="MKVNKAIYVIVALFLGGLGIHKFYADKFGQGLFHLLFFWTGIPT
                     IISIIHAIFVIFTKKADKDGYIIFPKN"
     gene            3736..4287
                     /locus_tag="PF788_001773"
     CDS             3736..4287
                     /locus_tag="PF788_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6304033.1"
                     /translation="MIRQARPEDRFDIAKLVYMVWDDMELELVKHLPKDMVLDAIEKS
                     CVDATYRTFYQHILVYEVENKVAGCIISYSGENELKYEKAWELLDLPEKIKQYGTPLP
                     VKEAKDDEYYIETIATFAAYRGRGIATKLLTSLLESNTHVKWSLNCDINNEAALKLYK
                     KVGFISDGQIELYKHMYHHLIVK"
     gene            complement(4339..5277)
                     /locus_tag="PF788_001774"
     CDS             complement(4339..5277)
                     /locus_tag="PF788_001774"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDG6304034.1"
                     /translation="MSNQYQQYSTVKKYWHLMRPHTLTASVVPVLVGTAASKIYFLGS
                     EDHIKISLFIAMLLACLLIQAATNMFNEYYDYKKGLDDHESVGIGGAIVRNGMSPELV
                     LRLAIAFYILAAILGLFLAANSSFWLLPVGLVCMAVGYLYTGGPFPISWTPFGELFSG
                     VFMGMFIIVIAFFIQTGNIQSYVIWLSVPIVITIGLINMANNIRDRVKDKASGRKTLP
                     ILLGKNASLTFMAIMYFIAYAFIVLTIIIKPGGSLFYLLALLSFPMPVKVIRRFKKND
                     TPPTMMPAMAAAGKTNTFFGLLYALGIYISALFAGI"
     gene            5459..6820
                     /locus_tag="PF788_001775"
     CDS             5459..6820
                     /locus_tag="PF788_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000190617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HDG6304035.1"
                     /translation="MATGVLEDDIVKEIYGSSKEWVSVEVKLSQSLDPSTLFHLTDNE
                     AGDRFYMRLNDNRTSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSEKHHL
                     RVVGGFQFSSHKSDDEWREFGLNHFVLPEVLISTDNNGTFLTYTVKRESFTVEALNDL
                     MDLFNNISDIDVDEQIGGITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFD
                     KDISIPYILKQAYSKEKNSYIFLLESQDSIFFSQTPEQLIKVNNKILSTKAVAGTIKR
                     SQDEDEDTKNVEAFLKDNKNLIEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYH
                     LYTEIKAPLKDDSYISLIDNLHPTPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYID
                     IYDDCEFIVAIRSMLIKKAQATLFAGCGIVKDSDPDSELAETNLKFTPMMNALGVDMN
                     GKS"
     gene            6807..8480
                     /gene="menD"
                     /locus_tag="PF788_001776"
     CDS             6807..8480
                     /gene="menD"
                     /locus_tag="PF788_001776"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDG6304036.1"
                     /translation="MGNHKAALTKQVFTFASELYAYGVREVVISPGSRSTPLALAFEA
                     HPNIKTWIHPDERSAAFFAVGLIKGSERPVAILCTSGTAAANYTPAIAESQISRIPLI
                     VLTSDRPHELRSVGAPQAINQVNMFNNYVSYEFDMPIADDSKETIDAIYYQMQIASQY
                     LYGPHKGPIHFNLPFRDPLTPDLNATELLTSEMKILPHYQKSIDASALRHILNKKKGL
                     IIVGDMQHQEVDQILTYSTIYDLPILADPLSHLRKFDHPNVICTYDLLFRSGLDLNVD
                     FVIRVGKPVISKKLNQWLKKTDAFQILVQNNDKIDVFPIAPDISYEISANDFFRSLME
                     DTTVNRVSWLEKWQCLEKKGRKEIKCYLEQATDESAFVGELIKKTSEKDALFISNSMP
                     IRDVDNLLLNKNIDVYANRGANGIDGIVSTALGMAVHKRITLLIGDLSFYHDMNGLLM
                     SKLNNIQMNIVLLNNDGGGIFSYLPQKESATDYFERLFGTPTGLDFEYTAKLYQFDFK
                     RFNSVSEFKNATLLSETSTIYELITNREDNFKQHQILYQKLSEMIHDTL"
     gene            8467..9270
                     /gene="menH"
                     /locus_tag="PF788_001777"
     CDS             8467..9270
                     /gene="menH"
                     /locus_tag="PF788_001777"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDG6304037.1"
                     /translation="MTHYKFYEANVETNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVI
                     TIDLPGHGEDQSSMDETWNFDYITTLLDRILDKYKDKSITLFGYSMGGRVALYYAING
                     HIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQSQL
                     ELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEK
                     FVQIAKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMILGFLKEEQND"
     gene            9263..10084
                     /gene="menB"
                     /locus_tag="PF788_001778"
     CDS             9263..10084
                     /gene="menB"
                     /locus_tag="PF788_001778"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDG6304038.1"
                     /translation="MTNRQWETLREYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAE
                     MIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRL
                     IRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLA
                     RIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALR
                     FLKAAMNADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP"
     gene            complement(10323..10652)
                     /gene="sspC"
                     /locus_tag="PF788_001779"
     CDS             complement(10323..10652)
                     /gene="sspC"
                     /locus_tag="PF788_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphostatin B"
                     /protein_id="HDG6304039.1"
                     /translation="MYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRH
                     GDDTSHNQYHILFIDTAHQRIKFSSIDNEEIIYILDYDDTQHILMQTSSKQGIGTSRP
                     IVYERLV"
     gene            complement(10690..11871)
                     /gene="sspB"
                     /locus_tag="PF788_001780"
     CDS             complement(10690..11871)
                     /gene="sspB"
                     /locus_tag="PF788_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine protease staphopain B"
                     /protein_id="HDG6304040.1"
                     /translation="MNSSCKSRVFNIISIIMVSMLILSLGAFANNNKAKADSHSKQLE
                     INVKSDKVPQKVKDLAQQQFAGYAKALDKQSNAKTGKYELGEAFKIYKFNGEEDNSYY
                     YPVIKDGKIVYTLTLSPKNKDDLNKSKEDMNYSVKISNFIAKDLDQIKDKNSNITVLT
                     DEKGFYFEEDGKVRLVKATPLPGNVKEKESAKTVSAKLKQELKNTVTPTKVEENEAIQ
                     EDQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSE
                     QDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYEQVDQLTKDNVGIMILAQSVSQNPN
                     DPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIG
                     Y"
     gene            complement(11953..12963)
                     /gene="sspA"
                     /locus_tag="PF788_001781"
     CDS             complement(11953..12963)
                     /gene="sspA"
                     /locus_tag="PF788_001781"
                     /EC_number="3.4.21.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-specific serine endopeptidase SspA"
                     /protein_id="HDG6304041.1"
                     /translation="MKGKFLKVSSLFVATLTTATLVSSPAANALSSKAMDNHPQQTQS
                     SKQQTPKIQKGGNLKPLEQREHANVILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTF
                     IASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG
                     DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKI
                     TYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQ
                     NIEDIHFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNPD
                     AA"
BASE COUNT         4618 a         1826 c         2345 g         4219 t
ORIGIN      
        1 gtctaataaa ttgttatata aacatatttc agaaagacta aaaaatacga ttgaaattga
       61 agagagtaaa ggtatttcaa gatattttga tataacgact ggtacatata ttgcctacat
      121 tagaaaaagt aaatctgaaa aagtgattga tttctttaaa gataataaac gaattgaacg
      181 gtttagtttt atagataata aagtgcatat gaaggaaaca tttaatgtag ataataaagt
      241 ttgttatcaa gtattttatg atgaaaaggg atacccatat atttcaagga atattaatgc
      301 taataatggt gctgtaggta aaacttatgt gttagttaat aaaaaagaat ttaaaaacaa
      361 tttagcactg tgtgtttact atttagaaaa actaataaaa gattctaaag atagtattat
      421 gatttgtgat ggaccaggga gttttccaaa aatgtttaat acaaatcata aaaatgctca
      481 gaaatatggc gttattcatg ttaatcatca tgaaaatttc gatgatacgg gtgcatttaa
      541 aaaaagtgag aaatatatta ttgagaatgc gaataaaatt aacggtgtaa ttgtattaac
      601 agaggcacaa agattagata ttcttaatca atttgatgta gaaaatattt tcactattag
      661 caattttgtt aagatacata atgctccaaa acattttcaa actgaaaaaa tcgtaggtca
      721 tatttctaga atggtaccaa cgaagcgaat tgatttgctt attgaagtgg ctgagttagt
      781 cgtaaaaaaa gataatgctg ttaaatttca tatatatgga gaaggatctg tcaaagataa
      841 aatagctaaa atgattgaag ataaaaattt agaaagaaat gtttttctta aaggatatac
      901 aacaactcca caaaaatgct tggaagattt taaattagtc gtttctacat ctcaatatga
      961 aggtcaaggg ttaagtatga tagaagcaat gatttctaaa aggcctgttg ttgcctttga
     1021 catcaaatac ggaccaagtg attttataga agataataaa aatggttatt taatagaaaa
     1081 ccataatatt aacgacatgg ctgataaaat acttcagctt gttaataatg atgtattagc
     1141 agcggagttt ggttcgaaag cgagagaaaa cattatagaa aaatattcaa cggaatcaat
     1201 attagaaaaa tggttaaatc ttttcaatag ctaaatgaaa aaatcctagg tattcatgag
     1261 tacctaggat ttttacgcat gataaataca aaaaaagaga ggatagtcct ctcaaacaat
     1321 agttaataaa attgtagcca tttcttccag ctgtaactac taatacaagc taagttcatt
     1381 acgatatgta tgatttcaaa ttcataacca cttacatatc ctcttgtaag tttaagtgtg
     1441 aagattgagc ctaacataac acaaatataa aaaacattaa cataaggcgt taaaaagccg
     1501 ataataagtg ctaaacctcc aacaacttca ccaattgaca tcaatactgc gatggtaggt
     1561 ggtaaaccta aagagcctaa gaagtgaatt gttccatcta aatcaacaaa tttcaaagta
     1621 ccatgcacta agaatgatgt tgctaacatc catctaatta aaagcatacc taatttcatc
     1681 atgtcacctc caacattcat atttttaaaa catagtccaa attatatttg taaacatgtg
     1741 gaaagtaaag attttttata agattaatta ttaaatattc tattgtattg aacaattgtt
     1801 gtagaaagat gtttaagtca tcagttactt tttgtattta taaataaaga ttagtacagc
     1861 atagtgcaaa gattataggg aaatgaatta actattgcat cgctatttat gaatcgtaaa
     1921 cactattatg aaattgcgag agtagtatgg acaattagaa tgatggtttg agataaatga
     1981 gtgttattaa ccagtgcgtc attttcaaaa ttagatgcca tttgctgttt ataataagaa
     2041 gatttgataa ttaactatga taagaaaaaa taataatccc ctaaatacat tataaacaaa
     2101 ttaaatgata aaataataat atatatttct actaaagttg tttggaggta aatgtgtgaa
     2161 taggaatatc gttaaactag ttgtgttcat gctaatttta gttgtagcag tagcgggttg
     2221 tggtcaaaaa gatactgaag agaaaactga aatgacgaca ataaaagatg aattaggaac
     2281 tgaaaaaatt aagaaaaatc ctaaacgtgt tgttgtatta gaatatagtt ttgctgatta
     2341 tttagcagca ttagatatga aacctgttgg tattgcagat gatggcagca ctaaaaatat
     2401 aacaaagtca gtaagagata agattggggc atatgaatcg gttggatcta gaccgcaacc
     2461 gaatatggaa gtgataagta aattaaaacc ggatttgatc attgcagatg ttagcagaca
     2521 taagaaaatc aaatcagaat tgagcaaaat tgctccgaca atcatgttag ttagcggtac
     2581 gggagattat aatgcaaata ttgaagcatt taaaacagtc gctaaagcag taggcaaaga
     2641 gaaagaaggc gagaagcgtc tggaaaagca tgataaaata ttagcggaga ttagaaagaa
     2701 aattgaacag agtacgttaa aatctgcatt tgcattcggt atctcaagag caggtatgtt
     2761 tattaataat gaagatacat ttatgggaca attcttaatt aaaatgggta ttcaacctga
     2821 agtcacaaaa gacaaaacta cgcatgttgg tgaacgcaag ggtggtcctt atatatattt
     2881 aaataatgaa gaacttgcca atatcaatcc aaaagttatg attttagcca ctgacggaaa
     2941 aacggacaaa aatagaacga aattcattga tcctgcagtt tggaaatcat taaaagctgt
     3001 gaaagataac aaagtttatg acgttgaccg aaataagtgg ttgaaatcaa gggggattat
     3061 cgcaagtgaa agtatggcag aagatttaga aaaaattgca gaaaaagcaa aataaaaata
     3121 cagcgctact cgtaaatcat ataagagtgg cgctgtattt ttaattatgt ttattatctg
     3181 tcggatgtga tgatttacct gaaagtttat ttcgaataaa tttaattaca taaccgacaa
     3241 ggattgtttt aacagttctt ttaatgaatt ggcgcatcgt tacatacctc atttctctat
     3301 atcttacgaa ctatataccc attcatatat gctttttaaa cgtcattgtc acaatttaat
     3361 ttttagggaa tataatataa ccatctttat ctgctttttt agtaaaaatg acaaaaattg
     3421 catgtattat tgagatgatg gtagggatac ctgtccagaa aaataataag tgaaaaagac
     3481 cttgtccaaa tttatcagca taaaatttat gaatacctaa acctccaaga aataatgcaa
     3541 caataacata aatggcttta ttgactttca tttgtaaatc ctccttaact ataattctac
     3601 ttaaattcgt tgtgaaaacc aatatttcta actttagaat tttcaaactt tctaaaatta
     3661 taagtatatc tttttaaaat aagctagaat ttctatataa taaatgttaa taacgtaaaa
     3721 gggaatgatg acatagtgat acgtcaagca cgtccagagg accgatttga tattgcgaag
     3781 ttagtttata tggtttggga tgatatggaa ttagaattgg taaagcatct acctaaagac
     3841 atggtattag atgcaattga aaaaagctgt gttgatgcaa catatcgaac tttttatcag
     3901 catattttag tttatgaagt agaaaataaa gtagcaggtt gtattattag ctatagtggt
     3961 gaaaatgaat tgaaatacga aaaagcatgg gaactacttg acttgccaga aaaaataaaa
     4021 caatatggca cgccattacc tgtaaaagaa gctaaagacg atgagtatta tatagaaaca
     4081 attgcgacat ttgcagcata tagaggtaga ggcatcgcga caaagttatt aacgtcatta
     4141 cttgaatcaa atacacatgt taaatggagt ttgaattgcg atattaataa tgaagcagca
     4201 ttaaagttat ataaaaaagt aggctttata tctgatggac agattgaatt atacaagcac
     4261 atgtatcatc atttaattgt taaataaaaa aactcgacag ttcgatgtaa gtcgattgcc
     4321 gagtagtatc attttctatt aaatgcctgc aaataatgca ctaatataaa tacctaatgc
     4381 atataataaa ccgaaaaatg tatttgtttt accagcagca gccattgctg gcatcattgt
     4441 aggcggtgta tcattcttct tgaaacgtct gataacttta acaggcattg ggaatgataa
     4501 caacgcaagt aagtaaaata atgagccacc aggtttaata atgatcgtaa gtacaataaa
     4561 ggcataagcg ataaagtaca tgattgccat aaatgttaaa gaagcatttt tacctaatag
     4621 aatgggtaaa gttttgcgac cacttgcttt atctttgaca cggtcgcgaa tattgttagc
     4681 catattaatt aaaccgatag tgattactat aggtacactt aaccaaatta cataactttg
     4741 aatattgcca gtttgaataa agaatgcaat aacgataata aacataccca taaatacgcc
     4801 tgagaataat tcaccgaaag gcgtccatga aatagggaaa gggccacctg tatataggta
     4861 accaacagcc atacatacta atccaactgg taataaccaa aatgaagagt tagcagctaa
     4921 aaacaaacct aatattgctg ctaagatgta aaatgcaatg gctaatcgta gcacaagctc
     4981 tgggctcata ccgttgcgaa caatggcacc accaatgcct acagattcat gatcatcaag
     5041 gcctttttta taatcatagt attcattaaa catattagtt gctgcttgaa taagtaagca
     5101 tgctagtaac atggcaatga ataggctgat tttaatatga tcttcgctac caagaaaata
     5161 tattttagat gctgctgtac caactaaaac gggtactacg gaagcagtta atgtatgagg
     5221 acgcattaaa tgccaatatt tcttaactgt agaatattgc tgatattgat tactcattga
     5281 atacaaaacc tctttaaatc atatttttta taacaaagat attttaatag aaagtagcat
     5341 aaaggtcaat tgacgtgaaa aattgcaaga taagtttaag caattcttgt aacacaatta
     5401 tccaaaaatg atacaatata ataatgagtg aaaaaagacg aagaaagaag tgaaatggat
     5461 ggctacgggc gtattagagg acgatattgt caaagagata tatggcagct caaaggaatg
     5521 ggtttcagtt gaagtgaaat tatcacagtc actagacccg agcacattat ttcatctcac
     5581 tgacaatgag gcaggagatc gcttttatat gcgtttgaat gataatcgaa cgtcatattt
     5641 tggctacaaa gcaattcaat tattcaaaaa taattctaaa aataaacaat ctatttttaa
     5701 agactgggaa aaattaaaac ataacatcac atttatacat ccgcaatctg agaaacatca
     5761 tcttcgagtt gttggagggt tccaattttc aagtcataaa tcagatgatg aatggcgaga
     5821 gtttggacta aatcattttg tattacctga agttttaatt tcaactgata ataatgggac
     5881 atttttaact tatacagtta aaagggaaag ttttactgtt gaggcattga acgatttaat
     5941 ggatttgttc aacaatatat cggacataga tgtggacgag caaattgggg gaattactag
     6001 aaatgaagat atttataaag atgactggcg tcaacttgta gtagaagcta tagaatctat
     6061 taataatgaa gaaaaaattg tactagcacg tagacggtta ataaagttcg ataaagatat
     6121 cagtattcca tatattctaa agcaagcata ttctaaagaa aaaaacagtt atatattctt
     6181 gttagaatca caagattcta tattcttttc acaaacacct gaacaattaa taaaggtcaa
     6241 taataaaata ctatcgacta aagctgtagc aggtacaatt aaacgttcac aagatgagga
     6301 cgaagataca aaaaatgttg aagcattttt aaaagataat aaaaacttaa tcgaacatcg
     6361 atttgttgtt gacagtattt tacatgatat taaaccttat atcactgaat tacattatga
     6421 taagacgcct aaaattctaa aaaatgatca tttatatcac ttgtacactg aaataaaggc
     6481 gccactgaag gatgattcgt atattagttt aattgataat ttacatccaa cacctgcttt
     6541 aggtggctat ccaaaagaat ttgcaatgga ttttattgag cagaaagaat ttggtacgcg
     6601 aggattatat ggtgcaccgg ttggctatat agatatatac gatgattgtg aatttattgt
     6661 tgcaattcgt tcgatgctta ttaagaaagc acaagcaact ttatttgctg ggtgtggcat
     6721 tgttaaagat tctgatccag atagtgaatt ggcagaaacg aaccttaagt tcacacctat
     6781 gatgaatgca ttaggagtcg atatgaatgg gaaatcataa agcagcttta acgaagcaag
     6841 tttttacatt tgcatctgag ttatatgcgt acggcgtaag ggaagtagtt atcagtccgg
     6901 gatcacgctc aacgccactt gcacttgcat ttgaagcaca tccaaatatt aaaacatgga
     6961 tacaccccga tgagcgaagt gcagcgtttt ttgcagttgg gttaattaaa ggcagtgaaa
     7021 gacctgtcgc tatattatgt acgtcaggta cagcagcagc gaattatacg cctgcaattg
     7081 ctgaaagcca aattagtaga attcctttaa tcgttttaac aagtgaccgt ccgcatgaat
     7141 taagaagtgt aggcgcacca caagcgatta atcaagtaaa tatgtttaat aattatgtaa
     7201 gttatgagtt cgatatgcct attgcggatg atagtaaaga gaccattgat gcaatttact
     7261 atcaaatgca aattgctagt caatatttat atggaccaca taaagggcca attcatttta
     7321 acttgccatt tagagatccg ttaacacctg atttgaatgc aacagaattg ttaacttctg
     7381 agatgaagat tttaccgcac tatcaaaaaa gtatagatgc atcggcatta agacacattt
     7441 taaataagaa aaaaggttta attattgtag gggatatgca gcaccaagaa gttgatcaaa
     7501 tactaacgta ttcaacgata tatgatttgc ctattttagc tgatccttta agtcatttaa
     7561 gaaaatttga tcatccgaat gttatctgta catatgattt gctgtttaga agcggcttag
     7621 acttaaatgt ggatttcgta attcgtgttg ggaaaccagt gatttctaaa aagttaaatc
     7681 aatggttaaa gaaaactgat gcatttcaaa tattagtgca aaacaatgat aagattgatg
     7741 tctttccgat agcgccagat atttcatatg agatttctgc gaatgatttc tttaggtcat
     7801 taatggaaga cacgacagtt aatcgcgtaa gttggttaga aaaatggcaa tgcttagaga
     7861 aaaaagggcg taaagaaatt aaatgttatt tggaacaagc tacagatgag agtgcattcg
     7921 ttggtgaatt gattaagaaa acatctgaaa aagatgcatt atttattagt aatagtatgc
     7981 ctatcagaga tgtagataac ttgttattga ataaaaatat agatgtctat gcgaatcgtg
     8041 gtgcgaatgg tattgatggt atcgtttcaa ctgcactggg tatggctgtg cataaacgaa
     8101 taacattatt gataggtgat ttatcatttt atcatgatat gaatggacta ttaatgtcaa
     8161 aattaaataa tattcagatg aatattgtat tattgaacaa cgatggtggc ggtatttttt
     8221 catatttacc acaaaaagaa agtgcaactg actattttga acggttgttt ggcacaccga
     8281 cgggattgga tttcgagtat acagctaagt tatatcaatt cgattttaaa cgttttaaca
     8341 gtgtttcaga atttaaaaat gccacattgt tatctgaaac ttcgacgatt tatgaattga
     8401 taacgaatcg cgaagataac tttaaacagc atcaaatttt ataccagaaa ttgagtgaaa
     8461 tgattcatga cacattataa attttatgaa gcaaacgttg agaccaatca agttttagta
     8521 tttctgcatg gatttcttag cgacagccgt acttatcata atcacatcga aaaatttact
     8581 gataactatc atgtcatcac tatagactta ccaggccatg gcgaagatca gtcttcaatg
     8641 gatgaaacgt ggaattttga ttatattacg acgttgttag accgaatttt agataaatat
     8701 aaagataaat caataacatt gtttggatat tcaatgggtg ggcgtgttgc attatattat
     8761 gcaattaatg gtcacatccc tatatctaat ttgatattag aaagtacgtc accaggtatt
     8821 aaagaagaag caaatcaatt ggaacgccgt cttgttgatg atgcacgtgc taaagtatta
     8881 gacatagcag gtattgaatt atttgttaat gattgggaaa agttgccatt atttcaatcg
     8941 caactagaat taccagttga aatacaacat caaataagac aacaacgatt gtctcaatcg
     9001 ccacataaaa tggccaaagc attaagagat tatggtacag gtcaaatgcc aaacttatgg
     9061 ccgcgcctga aagaaattaa agtaccaaca ttaatattag ctggagaata tgatgaaaaa
     9121 tttgtacaga ttgcgaaaaa aatggcaaat ttaattccta atagtaaatg taaattaatt
     9181 tctgctacag gtcatacaat tcatgtggaa gatagtgatg aatttgatac aatgatatta
     9241 ggatttttaa aggaggagca aaatgactaa cagacaatgg gaaacactta gagaatatga
     9301 tgaaatcaaa tatgaatttt acgaagggat tgctaaggta acaataaatc gccctgaagt
     9361 acgcaatgcg tttacaccta aaacagttgc tgaaatgatt gacgcatttt cacgtgcacg
     9421 tgatgatcaa aacgtttcag ttatcgtatt aactggtgaa ggtgatttag cattctgttc
     9481 tggtggtgac cagaagaaac gtggacatgg tggttatgta ggtgaagacc aaatccctcg
     9541 cttaaatgta ttagatttac agcgtttaat tcgtattatt ccaaaaccgg ttatcgcgat
     9601 ggtaaaaggt tatgctgtag gtggcggtaa tgtactaaat gttgtttgtg acttaacgat
     9661 tgctgctgat aatgctattt ttggacaaac tggtcctaaa gtaggttcat ttgatgcggg
     9721 ttatggttca ggatatttag cacgtatcgt tggacataag aaagcacgtg aaatttggta
     9781 cttatgtcgt caatacaatg cacaagaagc tttagatatg ggtctagtaa atacagtggt
     9841 acctttagag aaagttgaag atgaaactgt gcaatggtgt aaagagatta tgaaacactc
     9901 accaacagcg ttacgattcc ttaaagcagc tatgaatgct gacacagatg gtttagctgg
     9961 tttacaacaa atggctgggg atgcaacatt gctttattac acaactgatg aagcgaaaga
    10021 aggccgtgat gcgtttaaag aaaaacgtga tcctgacttc gatcaattcc ctaaattccc
    10081 ataagttatt ttgaatatga tattaagtca cttgcgtcgt ttattagcga cgataggtgg
    10141 cttttttatt ttataagaat ttaaaagggc attttaatta attatcataa agataagata
    10201 gtttgagaaa aattaataga gaaagaataa atgttaaaga ttattattac aatgaaaaaa
    10261 cgagctggtg agaaattgaa ttctcgccaa cccgctttat gaagtgaaat catttaaatt
    10321 agttatacta agcgctcata aacgattggt cgcgaagtgc caataccttg tttggatgac
    10381 gtttgcatga ggatatgctg tgtatcatca taatcaagaa tataaatgat ttcttcatta
    10441 tcaatagatg aaaatttaat gcgttgatgt gccgtatcta taaaaagaat atgatattga
    10501 ttgtgacttg tatcatcgcc atgacgtata caaattgatt tttgtaattg atgattactc
    10561 caattaccaa tgaataaatt gatattggtt tgttctagat gtgtgagttt ggttgtgtcg
    10621 taaactaaat ttataaattg tagttgatac atagttttac ctgcctttaa tcaatatcta
    10681 tattactttt tagtaaccta tcattgaacc ataccagtta taatcacgat tgaatgataa
    10741 atgtaatagg cttgaatctg catcttggat tgataattct gtatcccaag gattccagta
    10801 aataagtttt tcttggtcat taattttagc attaccaaca actgctagcg catgtcctaa
    10861 atgtgggtca ttagggtttt gagatacact ttgtgcaagg atcataattc ctacattatc
    10921 ttttgtaagt tgatcaactt gttcatatga tggtacgcct tcttgataat gaatatctct
    10981 gccttgtgat ttaccgtatt caatcatttg attagggaat gttgcacaat taggaaggtc
    11041 ttgctcactt acttcagggt ataatgtacg cataatatca tgtgcattat aagtgtctgt
    11101 atttttagtt gcatttaata atgctgccat actgaatcct gcacaccatg agttatcgaa
    11161 ttgttgttct ctaattttga agttttttaa tgtattttca tattgaactt gatcttcttg
    11221 tatcgcttcg ttttcttcaa ctttagtagg tgttactgta ttttttaact cttgtttcaa
    11281 ttttgctgaa actgttttag cactttcttt ttcttttaca ttaccaggta gaggcgtagc
    11341 ttttactaat ctaactttgc catcttcttc aaaataaaac cctttttcat cagtaagaac
    11401 agtgatattt gaatttttat ctttaatttg gtctaaatct ttagcgatga agtttgaaat
    11461 tttaacactg taattcatgt cttcttttga tttgtttaaa tcatctttat ttttaggact
    11521 aagtgttaaa gtataaacaa ttttaccgtc ttttataact ggataatagt aactattatc
    11581 ttcttcacca ttaaatttat aaattttaaa agcttcgcca agttcatatt taccagtttt
    11641 tgcattactt tgtttatcta atgctttagc ataaccagca aattgttgtt gtgctagatc
    11701 ttttactttt tgaggtactt tgtcactctt aacattaatt tctagctgtt tagagtgtga
    11761 atcggctttg gctttattgt tattagcaaa tgcgcctagt gataaaataa gcattgaaac
    11821 cattatgatg cttataatat tgaatactct agatttacat gaactattca tataataccc
    11881 tccatttaaa tcaaaatatt ttacgttgct aagactttgc ttctatttta tctagacgaa
    11941 cttaattgtt aattaagctg catctggatt gtctgaatta ttgttatcgc cattgtctgg
    12001 attatcaggg ttgttagggt tgtcagggtt atttggttca tctgggttgt tagggttatc
    12061 aggattgtta gggttatcag gattatctgg gttattaggt tggtcatcgt tggcaaaatg
    12121 gatatcttca atattttgtt ttaagaagtt gcgtacattt tcattaataa ataccgcacc
    12181 attaaattca tttggtacac cgccccaatg aattccgatc acttcatttt tttcattaaa
    12241 tacaggtgaa cctgaattac caccagttgt acttaaatca tattgcatag cttcgccttt
    12301 gaggtaagtg atttttcctt tactttccca cattgttgct acaggtttat caccaggata
    12361 tcctgttaca gtaatatttt ggttaacttg tgtttcagca ttattactca ttgttgctgg
    12421 tttaactact tcaccaatat gtttgttttg ctcattaggg gagaatttaa ctattgctaa
    12481 atcaccttcg cctgaatatt tagtgatttg ttcagcagtg aaaccaccat ttggataatt
    12541 gtcttggtta attgcagaag ggaatgcttt taaagcatga ggatcaccgt gcgtagcatc
    12601 tacgacgtgt ttatttgtta aaagagtatc tttacctaca actacaccgg aagcaataaa
    12661 tgtaccagta ggtgcttcaa cttgaatata agttacgggt gcataatgac cattcgttgt
    12721 atctgtgatt tggtgacgat cgttatttgg taatataaca tttgcgtgtt cacgttgttc
    12781 taatggttta aggttaccgc ctttttgaat cttaggtgtt tgctgtttgc ttgactgcgt
    12841 ttgttgtgga tgattgtcca tagcctttga agataacgcg tttgctgctg gagaactcac
    12901 aagtgtcgct gttgtcaaag ttgcaacgaa taaagaacta acttttaaaa atttaccttt
    12961 catctaaaaa cctccaaaaa atttatttac aagttaaata taacacta
//
LOCUS       DAMQWL010000070        12997 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.070, whole genome shotgun sequence.
ACCESSION   DAMQWL010000070 DAMQWL010000000
VERSION     DAMQWL010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 12997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12997
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.070"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            207..1664
                     /locus_tag="PF788_001782"
     CDS             207..1664
                     /locus_tag="PF788_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500488.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDG6304042.1"
                     /translation="MKCLIRFILVLGLLISSAMVYINPTAHAEQDQTWEKIKERGELR
                     VGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTG
                     KIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKG
                     TEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISN
                     VKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISK
                     YGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPML
                     VQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSL
                     GLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISF
                     DPFTPLIVAAALYFVLTFVLTRIMNMIEGRLNASD"
     gene            1657..2379
                     /locus_tag="PF788_001783"
     CDS             1657..2379
                     /locus_tag="PF788_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDG6304043.1"
                     /translation="MIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLL
                     RCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAP
                     KLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILF
                     DEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESG
                     TPVEIFEQPQHERTQNFLARVL"
     gene            2530..3657
                     /gene="queG"
                     /locus_tag="PF788_001784"
     CDS             2530..3657
                     /gene="queG"
                     /locus_tag="PF788_001784"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HDG6304044.1"
                     /translation="MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANG
                     YASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWG
                     QDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVIN
                     PKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFL
                     TQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLR
                     MSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPLIRAT
                     AYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE"
     gene            3662..4132
                     /gene="trmL"
                     /locus_tag="PF788_001785"
     CDS             3662..4132
                     /gene="trmL"
                     /locus_tag="PF788_001785"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDG6304045.1"
                     /translation="MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKM
                     LKRAGLDYWEFVNITYHDSIEAFFEVTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIF
                     GKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN"
     gene            4291..4890
                     /locus_tag="PF788_001786"
     CDS             4291..4890
                     /locus_tag="PF788_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate isomerase"
                     /protein_id="HDG6304046.1"
                     /translation="MAMNFKVFDNSQLVAEYAADIIRKEFNNNPTTIAGFHLDTDQAP
                     VLDELKKNVEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKI
                     KTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGK
                     TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA"
     gene            4915..5067
                     /locus_tag="PF788_001787"
     CDS             4915..5067
                     /locus_tag="PF788_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304047.1"
                     /translation="MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKN
                     SEEDSQ"
     gene            5844..6239
                     /locus_tag="PF788_001788"
     CDS             5844..6239
                     /locus_tag="PF788_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304048.1"
                     /translation="MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQL
                     NLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITAILYYTLDGFYASLTGVLGTLVAL
                     NPYTTIVSAVLYILTAIATVEATKTKYRN"
     gene            6435..7820
                     /gene="fumC"
                     /locus_tag="PF788_001789"
     CDS             6435..7820
                     /gene="fumC"
                     /locus_tag="PF788_001789"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000116229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDG6304049.1"
                     /translation="MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVV
                     YGFAQLKRAAAIANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSN
                     MNVNEVVSYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEP
                     ALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKK
                     HILNLAIGGTAVGTGINAHPEFGDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLH
                     GTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMV
                     AVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPI
                     EENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEA
                     WIKPEDMVDPH"
     gene            complement(8283..9104)
                     /locus_tag="PF788_001790"
     CDS             complement(8283..9104)
                     /locus_tag="PF788_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDG6304050.1"
                     /translation="MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPA
                     RLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKES
                     NTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKAN
                     VKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDT
                     GRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLDD"
     gene            9267..10379
                     /locus_tag="PF788_001791"
     CDS             9267..10379
                     /locus_tag="PF788_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing sensor histidine kinase"
                     /protein_id="HDG6304051.1"
                     /translation="MEQRTRLALLKEIAEFLNEETEMYSMTQGALKYLIEGSNFTTGW
                     IFFINSVGEHELVSHVALPQSLTADHCHYIKDGSCWCVKAFNQRRLMKASNIVNCSRI
                     NLASKAFPSQNDNITHHATVPLKSGQEQFGILNVASPNTEIYSDEDLELLESVAFQLG
                     SAIKRIYLTDREKEAAKINERNRLARDLHDSVNQMLFSVKLTAHAAYGMSNESIAKQA
                     FKTIEETSQNAVNEMRALIWQLKPVGLEQGLIHALTAYSKLMHIQLNVNVEGLIDLSN
                     EIEENIYRALQECINNVKKHADTNKMDLTLKQMNDILYIDVIDYGQGFEIDNVQIASS
                     HGINNIKQRVKLLRGKVTFHSQPTKGTQIQFTIPIK"
     gene            10401..11024
                     /locus_tag="PF788_001792"
     CDS             10401..11024
                     /locus_tag="PF788_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6304052.1"
                     /translation="MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLK
                     EHEHPDIVLLDLVMPGMNGIEITEYIKAHYPDIKVLVLTSYVDDEHVISAINKGADGY
                     EMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVK
                     GKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI"
     gene            11380..11844
                     /locus_tag="PF788_001793"
     CDS             11380..11844
                     /locus_tag="PF788_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304053.1"
                     /translation="MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEK
                     ERVLPNWTTCISICALFRDSEVLNSTFGCDPLEIVQTISRNHCAYPNHAPTSDIYWNN
                     IETRNGYILQSNKVSNIYRVLNPDNQPIFGTSKMREAETYFNRNAKEELVHI"
     gene            12023..>12997
                     /locus_tag="PF788_001794"
     CDS             12023..>12997
                     /locus_tag="PF788_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HDG6304054.1"
                     /translation="MNALFIIIFMIVVGAIIGGITNVIAIRMLFHPFKPYYIFKFRVP
                     FTPGLIPKRREEIATKIGQVIEEHLLTETLINEKLKSEQSQQAIESMIQQQLQKLTKD
                     QLSIKQITSQIDIDLEQVLQTNGNQYIESQLNNYYTKHQNQTIASLLPNQLVTFLNQH
                     VDNATDLLCDRARNYLSSAKGTQDINDMLDTFFNEKGKLIGMLQMFMTKESIADRIQQ
                     ELIRLTSHPKARTIVTSLITNEYQTFKDKPLNELLDASQFNEIAENLSVYVTTYASKQ
                     ANKPVVTLMPQFVDYLEGQLSSKLANLIIEKLSIHLSTIMKKVDLRGLI"
BASE COUNT         4763 a         1808 c         2326 g         4100 t
ORIGIN      
        1 tactgtcaat aagatattga tagtagcgct tttttgattg attttaaaat gtgagatttg
       61 ttcacgtata atagcggatt ttttatgtac agtcttttaa aaagaagctt ttctttatat
      121 tgataaaaat acatttataa aacactattg catcaaaatg tattaatatg tataattatg
      181 aatattaatt agggagggct gtataaatga agtgtttaat taggtttata ttagtattag
      241 ggttgttaat tagcagtgct atggtgtata tcaatcccac agcacatgct gaacaagatc
      301 aaacatggga gaagattaaa gaacgcggtg aacttagagt gggtctttct gcagattatg
      361 caccaatgga atttgagcat acagttaatg gtaagactga gtatgcaggt gtagatattg
      421 atttagctaa aaaaattgcg aaagataata atttaaaatt aaaaatcgtc aatatgtcat
      481 ttgatagttt gttaggagct cttaaaactg gaaaaattga tattattatt tccggaatga
      541 cttcaacgcc tgaacgtaag aagcaagttg atttttcaga ttcatatatg atgactaaaa
      601 atatcatgct tgtaaagaaa gataaagtta atgaatataa agatatcaaa gactttaata
      661 ataaaaaagt aggggcacaa aagggaactg aacaagaaaa aatcgctcaa accgaaattg
      721 aaaatgcatc tattacttca ttaagccgtt taccagacgt tatattagca ttgaaaagtg
      781 gaaaggttga aggtgctgta gttgaaaaac ctgtagcaga agcatattta aaacaaaatc
      841 ctaaattagg aatttccaat gtgaaattta atgaagaaga aaaagataca gtgatagcag
      901 tgccaaaaga ttcaccaaaa ttattgtcac aaattaataa aacgattaag gaggttaaag
      961 ataaaggatt aatcgataaa tatatgacta atgctgcaaa tgcgatgaat gatgacagtg
     1021 gttttatttc taagtatggt agttttttct tgaaaggaat taagattaca atattaattt
     1081 cacttatcgg tgttgcatta ggttctattt taggtgcatt cgttgcgtta atgaaattaa
     1141 gtaaaataaa aattatttca tggattgctt ctatctatat cgaaatatta agaggaacac
     1201 caatgttagt tcaagtattt atcgtattct ttggtataac tgctgcatta ggactagaca
     1261 tttcagctct tgtttgtgga acaattgcat tagttattaa ttcctcagct tacattgctg
     1321 aaattattcg tgcaggtata aatgctgttg ataaaggcca aatggaagcc gcacgtagtc
     1381 taggtttgaa ttatagacaa acgatgaaaa gtgtaattat gccacaagca attaaaaata
     1441 ttttaccagc tttaggtaat gaatttgtca ctttaattaa agaatcatct attgtgtcaa
     1501 caattggagt tggcgaaatt atgtttaatg cacaagtggt tcaaggtatt tcatttgacc
     1561 cattcacacc attaatagtg gcagcagcat tatactttgt cttaacattt gtacttacac
     1621 gcattatgaa catgattgaa gggagattga atgccagtga ttaaaataaa caatcttaat
     1681 aaagtttttg gagataatga agttttaaaa gatatcaatc ttgaaatcaa tcaaggggaa
     1741 gtagtagcaa taataggtcc atctggtagt ggtaaaagta cattgttaag atgtatgaat
     1801 ttattagaag tacctactaa aggtcaagtg atttttgaag gcaatgactt aacggaaaaa
     1861 gggacacaag tagataaact acgtcaaaaa atgggtatgg tatttcaaaa cttcaaccta
     1921 tttccacata aaaaagttgt cgataatatt attttagctc ctaaattatt aaagaaagat
     1981 aataacgatg aattacataa ggaagcattg tcgttattag ataaagtggg attaaaagaa
     2041 aaagcagatg tatatccgaa tcaattatca ggtggtcaaa aacaaagggt agcaattgca
     2101 agagctttag caatgcatcc agatgttatt ttattcgatg aaccaacttc agcattagat
     2161 cctgaggtag ttggtgatgt attaaaagta atgaaagacc tagccaaaga aggtatgacc
     2221 atggtggttg tgacacatga aatgggattt gccaaagatg taagtgacaa agtcatattt
     2281 atggcagatg gcgttgtcgt agagtcaggc acaccagtcg aaatatttga acaaccgcaa
     2341 catgaaagaa cacaaaattt cttagcaaga gtattataac aacctaacga agcttgaata
     2401 tatgatacgc accacaaagt tatatcatat attcaagctt tttattatta aaattatgtg
     2461 aaatgaaacc tcaatatgaa taatggttgt gttaaaataa catagtatta ttttatgggg
     2521 ggcatacgat tggatacaaa gcaattaaag caagatatca ttgactatgc atatacaatt
     2581 ggtatcgaca gtattggatt tactactgcc gatccctttg atgaattgaa gcaaaagcta
     2641 gaagcatatc atgcaaatgg ttatgcctca ggatttgaag aatctgatat tgctttacga
     2701 acggagccta aattatcctt accaacagca aggtcaatca tagcaattgc agttggttat
     2761 cctaacaaac tgaaaggtgc acctaagagt gttagaggtg atcgcagagg cttatttgct
     2821 agagcatcgt ggggtcaaga ttatcataca attatgcgta aacgattaga catgttagct
     2881 gcatttattg aatctaaagt tccagatgtt gaaatcaaat ctatggtaga tacgggtgta
     2941 ttatcagata gggcagtagc agaacgtgca ggtttaggat ttgttggtcg taatggcttt
     3001 gtcatcaatc ctaaactagg aacatggaca tacctcggtg aaatgttagt cagtatacct
     3061 tttgaacctg atgatccatt attagatagc tgtggtgatt gtacaatttg tgttgatcgt
     3121 tgtccaacaa gtgcattagt tggaaatggc caattaaata gtcagaaatg cattagtttt
     3181 ttaacgcaaa caaaaggcta tatgcctgac caatatcgtt ataaaattgg gaatagatta
     3241 tatggttgcg atacgtgtca acaagtttgt ccgaaaaata gaggtattaa taccgaacaa
     3301 gatgacatca ttttggaacc agaaatttta aagccaagat tagtaccttt actacgtatg
     3361 tctaataaag aattcaaaca aacatatggt caccttgcag gtgcttggcg tggtaaaaag
     3421 ccgatacaac gaaatgctat tttagcattg gcgcatttta atgaagtgga tgcaattcca
     3481 gaattgaaaa aagttgcaac aacagatgaa agaccgttga ttcgagcaac tgcttattgg
     3541 gccattggtc aaattcttgg ggaagaagca agagatttta tcaatgctaa ttatgatcaa
     3601 gaggatgcag aagttcagaa tgaaatgata aaaggattag acacaaggag agaatagtaa
     3661 tatgacaaat catatcgttt tatatcaacc agaaatccca gctaatactg gtaacattgc
     3721 acgtacgtgt gcaggtacaa acacacattt acatttaatt aaacctcttg gatttagaac
     3781 tgatgataaa atgttaaaaa gagccggttt agattattgg gaatttgtga atattacgta
     3841 tcatgatagt attgaagcat tttttgaagt cacaaatggc gagtattact tattaacaaa
     3901 atttggtaaa aagacttata gtgattttga tttttcaaat catgacaaag atttttactt
     3961 catttttgga aaagaaacga caggattacc agactgggtg aaagagaaat atcaagacac
     4021 agcgttaaga attcctatga gtgaacatat tcgttcatta aatttatcaa atactgctgc
     4081 gttgttaatt tatgaagcgt tacgtcaaca agattttccg ggattgaatt aaaatttact
     4141 cattttcatt ataaaaatga tgcttaagtg ctatatttag agtataagca tgttaaagtt
     4201 aaatggtttg atatattgaa agttagggta taataattat taatatcgcc gtttttatgt
     4261 aaaatgcaaa ctaagaggag tgtagaaatc atggcaatga actttaaagt ctttgacaat
     4321 agtcaacttg tagcagaata tgctgctgat attattagaa aggaatttaa caataatcct
     4381 actacaattg caggttttca tttagataca gatcaagcgc cagttctaga tgaattaaag
     4441 aaaaatgttg aaaaacatgc tgttgatttt agccaaataa atattttaga ttatgacgat
     4501 aaaaaatcat atttcgaagc gttaggtgta ccagcaggtc aagtttatcc aattgcttat
     4561 gaaaaagatg caatcgaatt aatcgctgat aagattaaaa ctaaagaaaa taaagggaaa
     4621 ttaacattac aagttgtttc tatcgatgag caaggtaagt taaatgttag tattcgtcaa
     4681 ggactaatgg aagcaagaga aattttctta gtagtgacag gtgctaataa acgagatgta
     4741 gttgaaaaat tatatcaaga aaatggtaaa acaagcttcg aaccagccga tttaaaagca
     4801 catagaatgg taaatgttat tcttgataaa gaagcggctg caggtttacc tgaagatgtt
     4861 aaagcttact ttacgtcacg ctttgcttaa ttaaaaatct gtgaggtatt gattatgtct
     4921 aaagacaaag atccaaaatt aaattatcat gaagaagaaa acagtatggt aacggatttt
     4981 gaagatttaa aagaattagg taaagaaatg gaacaaatct ctgatcaaaa tgatcaagaa
     5041 aagaattctg aagaagacag tcagtaaagt attataattg tgtaatattc agttatttat
     5101 catgtaaata atgtatagta tagaacatat atcaaatagg attgattatc ttgaatatga
     5161 agttaggtag cattttgtta cctagctttt ttattatatt catagaagct gactttctgc
     5221 tagtttcagt gttggggctg tttccccaac ttacattgtt tgtagaaatt gaggatccaa
     5281 tttttctatg ttgtggcccc gccaacttgc atgttatttt aagctgactt tccaccaact
     5341 tctgagtttg tggcccgttt ccctaatttg caatgtctgt agaaattaga aatccgatct
     5401 cactattttg gggcctcgcc aacttgcatg ttattttaag ctgactttcc accagtttct
     5461 gagtttgtgg cccgtttccc caatttgcaa tgtctgtaga aattgggaat ccaattccac
     5521 tatgttggag ctccaccaac ttgcatgaaa tagaagctga cattccgaag cctctatgtt
     5581 gtggactgca gtcaactact gccaatataa ctttgtaaag cataaaacat tgatttgtgt
     5641 accagacata gtaatatatc aaaagttcaa ttttaaatat taaaacacca tttaaacgga
     5701 attgataatt aattactcca gacataattg aaagaagtca tctatcagta atatttttaa
     5761 tgaaatcatt aaaccgcgtt tcttaatatg ccaagattat gatatgctat tgaagaatga
     5821 aattagagga gatttatata tttatgttag gaaaatactg gattcaatta ttgatagcaa
     5881 cagttattat aagtttaata tcaattaaag cttttccatt ggcaattggg gcattatatt
     5941 tacctgttat tttcaaagta ataaaattac aactcaattt atcaaaagga ttaattgatg
     6001 atgttaatgc gcaaacattc attaaaagta atcaatcagg tattgtaatc agtgtaattt
     6061 gttgtttatt aataacagca atattgtatt atacacttga tgggttttat gcgagtttaa
     6121 caggagtttt aggtacgctt gttgctctaa atccatatac gacaattgtt agtgctgtat
     6181 tatatatact tacagctatt gctacggttg aagctactaa aacaaagtat cgtaattaaa
     6241 cttagttcaa taataactaa ataatgatag ataacacact aatcgtatga ccgtatcact
     6301 gtaataaagg gtgaacacgt gcgattagtg tatttttatt tcaaattatg aaaacgtttt
     6361 aatcataaat tgctcaatta aattatttaa tgatatacta cagttaaata aacagtgata
     6421 aggggagaaa ttgaatgtca gtaagaattg aacatgatac ttttggagaa atagaagtac
     6481 ctgcagataa atattggggt gctcaaacag aaagaagtaa acgtaatttc ccagttggta
     6541 aagagcgtat gccaatcgaa gtagtttatg gttttgcaca actaaagcgt gcagcagcaa
     6601 tagctaattt tgatttagga aaattaagcg aggcaaagaa agatgccatt gtatacgcat
     6661 gtgatcaaat tttatcaggt gaattagatg aacacttccc actagttgta tggcaaacag
     6721 gaagcggtac acaaagtaat atgaatgtga acgaagtagt aagttatgtt gctaatatgt
     6781 atttaaaaga tcatcaaagt gatgaaagta tccacccaaa tgatgatgta aataaatctc
     6841 aaagttcgaa tgatacattc ccaactgcta tgcacgttgc attatatcaa gaggttgaaa
     6901 caaaattaga acctgcatta aaacttttaa gaaatacttt gaaagaaaaa gaagataaat
     6961 ttgattcaat tattaaaatt ggtcgtacac atttacaaga tgcaacgccg atcaaactag
     7021 gacaagagat tagtggctgg cgttatatgc ttgaccgttg tgaaacaatg ttatctgaat
     7081 ctaagaagca cattttaaat cttgccatcg gtggtacggc tgttggtact ggtattaatg
     7141 cgcatcctga atttggtgat aaagtggcac attatatttc agaaaatacg ggttatccat
     7201 ttgtatcttc tgaaaataaa ttccacgcac ttacagcgca tgatgaagtt gttcaattgc
     7261 atggaacatt gaaggcatta gcaggagact taatgaaaat tgctaatgat gtgagatggt
     7321 tggcttcagg gccacgagct ggtttggcag aaatttctat ccctgaaaat gaaccaggtt
     7381 catcaattat gcctggtaaa gttaatccta cacaatgtga aatgttaaca atggttgcag
     7441 tccaagtaat gggtaatgat acagttgttg gcttcgcaag ttcacaaggt aactttgaat
     7501 tgaatgttta taaaccagtt attatgcata atacactaca atcaatttat cttttagctg
     7561 atggtatgga aacatttaat aacaattgtg cagtgggcat tgaaccaatc gaagagaata
     7621 ttgataatta tttaaatcaa tcattaatgt tagttactgc attaaatcca catattggtt
     7681 atgaaaaagc agctcaaatt gctaagaaag cccataaaga aggtttaact ttaaaagaat
     7741 ctgcaattca aactggatat gttacagaag aacaatttga agcatggatt aaaccagaag
     7801 atatggtaga tcctcattaa ttaaatatta atataaaata aagtttgggc attacaggta
     7861 gatgtagtgt tcaagcttta ttttttgtct atgtcaaatt gaacttataa gtctgatttg
     7921 atatagagcc atgaaaagga aaaacttttc atggagtccg ttttattata gaacctattt
     7981 tttatatgat gaattgttgt acatgtattg gccaaacaac ctgtgataaa aatcttatga
     8041 tgtcatgtat tgtccataga tacacgtaac gcagttgaaa aagactacaa gtcattatcc
     8101 aaggatgtta taaaatgaat aattactaaa atatcaaaat ataaaatcct aagcatcgta
     8161 aaaaacaaaa aaaccgaaca tctgaaaaaa ttaataattt tccatctatc cgatttaagt
     8221 tgatacttga tttagttaca atgcggtatt gcatgtttaa atatcatgca aaactaatca
     8281 aattagtcat ccaaagaaac ggaaatgact tccttagtca agggatgcac aaactctatt
     8341 ttgtaacttt caagttctaa ttgtcttaac gttgaatcac catataaagg atcaccaata
     8401 acagggtgac caatttcagc taaatgcaca cgaatttgat gagtacgtcc agtatccaac
     8461 ttgatttcaa gttggcacac agcttctttt atcatttttg aagttaaaat gtgtgtaatt
     8521 gcacgctgtc cagtaggaga cacacgtcgt ttattcgaat ggaatttatc tttaccaatt
     8581 ggcatatcaa tcgtttgtgg ttttaaaggt aaaagtgcct taacatttgc tttgtatatc
     8641 cgcgtaatat cattgtcttc taacatgcga tcaagaattt ttttcattaa aggattttta
     8701 gcaacaatta ataatcctac tgtttcctgg tccagtcgat gaattggttc gacatagtca
     8761 ctatcaatag tgtaaatcac atgattcatt aaagtattgc tttcttttaa atcattaggg
     8821 tgagtcttaa cacctttagg tttcattacg attgccatat catcgtcttc gtatttaatt
     8881 tgtgcataac gataacttgg aacataatta cttttttcat cgatggttgg aacaaataca
     8941 tcgtcgccag tatgcacttt atccattaat cgcgcaggtt tatcattaat agtaatatct
     9001 ttagacatat ttaaatgatg taaatctttt ttaggtacct taagttgttg gaaaatatct
     9061 cgtaaactta agtcattaaa gttttctggt attttaaatt tcataaaatc ctcctatagt
     9121 ctttaatatc atatcacaaa tcagttctcc gaaatataac tattgagtaa tcaaggccat
     9181 tttatcatgt ttacgtctaa gatttaaaaa tataataact caatgtataa tagttaatac
     9241 acgtaaaaat gaattggagc gatttgatgg aacaaaggac gcgactagct ttattaaaag
     9301 agattgccga atttttaaac gaagaaactg aaatgtatag catgacccaa ggtgcgttaa
     9361 aatatttaat tgagggcagt aatttcacga caggctggat atttttcatc aatagcgtag
     9421 gtgaacatga acttgtatca catgtggctc taccacaatc tttgacagca gaccactgtc
     9481 actatattaa agatgggtct tgttggtgtg tgaaagcatt taatcaacgt aggctaatga
     9541 aagcgtcgaa tatcgtcaat tgttctcgta ttaacttagc ctctaaagca tttcctagcc
     9601 aaaatgacaa tattacacat catgcaacgg taccacttaa atcgggtcaa gaacaattcg
     9661 gcattttaaa tgtagcgtct ccaaatactg aaatatatag cgatgaagat ttagagttgc
     9721 tagagtctgt cgcatttcaa ttagggtcag ccatcaaacg tatttattta acagaccgtg
     9781 aaaaagaagc ggcaaaaatt aatgaacgta atcgtttagc tagagattta catgattcag
     9841 taaatcaaat gttattttct gtaaaactaa cagcacatgc tgcgtatggc atgtcaaacg
     9901 aatccatcgc taaacaagca ttcaagacga ttgaggaaac gagtcaaaat gccgttaatg
     9961 aaatgcgtgc attgatttgg caacttaagc cagttggact tgagcaaggt ttaattcatg
    10021 ctttgacagc atatagtaaa ttaatgcata tacaattaaa tgtaaatgta gaaggtttaa
    10081 tcgatttatc taatgaaatc gaagaaaaca tatacagagc attacaagag tgtattaata
    10141 atgttaagaa acatgctgat acgaataaaa tggatcttac attaaaacaa atgaacgata
    10201 tactatatat tgacgtgatt gattatggtc aaggatttga gatcgataat gttcagatag
    10261 cttcatcaca cggtattaat aacataaaac aaagagttaa attattaaga ggtaaagtga
    10321 cctttcattc tcagccaaca aagggtacac aaatacaatt cacaattcct ataaaatagc
    10381 ttgatttaag gagataaccc atgaacaaag taatattagt agatgaccat tatattgtgc
    10441 gacaaggatt gcgattttta ttatccacga ttgaaaacat agaagtttta caagactttg
    10501 cagatggaga aacattttta gaatatttaa aagagcatga gcaccctgat attgtgctat
    10561 tagatttagt gatgcctggc atgaatggta ttgaaattac ggaatatatt aaggcacatt
    10621 atccggatat taaagttttg gtattaacaa gttatgttga tgatgaacat gtaatttcag
    10681 caatcaataa aggtgctgat ggttatgaaa tgaaagacgt tgagcctcag caattaattg
    10741 aaactattag acgagttatg aacggtgaaa aaatgataca tcctaaggca caagatgtat
    10801 tcgaaacagt tagccaaaaa ccacactaca cgaataagtt gtcaaagaga gaaattgaag
    10861 tgttacgtga aatggttaaa ggtaaaacaa ataaagagat tgcagaaact ttatttgtat
    10921 ctgaaaaaac aattaaaaca catgtcagtc atatatttag taaattacaa gttagcgatc
    10981 gtacacaagc agcaatttat gcaatggaaa ataagttgat ttagaatgag cttttaaata
    11041 tttgtcgaaa aatagacaat ttttaatctg attttgatga attttttata gcgatagggt
    11101 ttattataca gttttctttg taaatttgat atcattataa aagtgtaagt tttatcaaat
    11161 ctagtgatta tgcataaaaa tttacttcat ttactttcgc ttcattataa agtaaactta
    11221 actcttgttg acttgatcaa aatttaatac aaatgtgaaa ttgactcttt tcattttatt
    11281 aaaaatatat taagatgtaa tctgtgtttc aagaaatgtg tattattgca atttcttgtg
    11341 tccggataaa attccccaaa cagaaaggta gataacagaa tggatagaca gagttttaca
    11401 gatttaattc aaacaaaatt taaaatggtt cgtatagagg ctggttatac gcaagatact
    11461 atggcgcaaa caattggact ttctaaaaag actttagtac aaatcgaaaa agagagagta
    11521 ttaccaaact ggacaacttg tatttcaatt tgtgcattat tcagagactc tgaagtatta
    11581 aacagtacat ttggctgtga tccattagaa atcgttcaaa caatttcaag aaatcactgt
    11641 gcatatccaa accatgcacc aacaagtgat atttattgga ataacattga gactcgtaat
    11701 gggtacattt tacaaagtaa caaagtaagc aatatttatc gtgtattaaa tccagataac
    11761 caaccaattt tcggtacttc taaaatgaga gaagctgaaa catactttaa cagaaatgct
    11821 aaagaagaat tagtacatat ctaggcctat atacttttaa taaataataa aagcgatgta
    11881 acacacctgt ttcgagaggt gaggcatcgc tttttgtatg taaactaata ataaattgag
    11941 cagaaagtga aatgattaat gaattaaaaa ataaaaatag tggtataatg aataactatg
    12001 ttgtcacaaa ggagtcaaaa ttatgaatgc actatttatt atcatattta tgattgtagt
    12061 aggggcgata attggtggca ttactaatgt aattgcaatt agaatgctgt ttcacccctt
    12121 taaaccatac tatatattta aatttagagt cccatttaca ccaggtttaa taccgaaaag
    12181 acgcgaagaa attgcaacta aaattggcca agtgattgaa gagcatttgc ttacagaaac
    12241 tttaattaat gaaaaattga aaagcgagca atcacagcaa gcaatagaat ctatgattca
    12301 acagcagtta caaaagttga cgaaagatca attgtcaata aaacaaatta cttctcaaat
    12361 cgatattgat ttagaacaag tattacaaac taatggaaat caatatattg aatcacaatt
    12421 gaataattat tatacaaagc atcaaaacca aacaatagca tctttattgc caaatcaact
    12481 tgtaacattt ttaaatcagc atgtagataa cgcaacagac ttattatgtg atcgtgcaag
    12541 gaattattta tcatctgcaa aaggcacaca agatattaat gatatgttgg atactttttt
    12601 caatgagaaa ggtaagttaa ttggtatgtt gcaaatgttt atgacaaaag agagtattgc
    12661 agatcgcatt caacaagaac ttatacgttt aacatctcat cctaaagcaa gaacaattgt
    12721 gacatcgtta attaccaatg aatatcaaac ttttaaagat aaaccattga atgaactgtt
    12781 agatgcatcg cagtttaatg aaatcgctga aaatctatca gtgtatgtaa caacatatgc
    12841 aagcaaacaa gcgaataagc cagtggttac gttaatgcct caattcgttg attatttaga
    12901 aggtcaactc tctagcaaat tagcaaattt aatcattgaa aaattatcga ttcacttatc
    12961 tacaattatg aaaaaagtgg atttacgagg attaatt
//
LOCUS       DAMQWL010000071        12715 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.071, whole genome shotgun sequence.
ACCESSION   DAMQWL010000071 DAMQWL010000000
VERSION     DAMQWL010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 12715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12715
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.071"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..699
                     /locus_tag="PF788_001795"
     CDS             <1..699
                     /locus_tag="PF788_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304055.1"
                     /translation="YKKNVVLDKVYYSEVYKYSDNLIKVFSEDVWNIMGYKKYNEYFT
                     NRDDTTLKITNLYIGQSFGTEGNRNVIDRIGKGHEKLQEIMTYQPENRKTVLIFYKIQ
                     PDNIYITNQYGKEAVSRLKRILEQSIPNKEYIDLSEISLITFFKPEYNKQHVNEEFNS
                     LSSSKIKNLAKENDGIIIYLNFKDVNYQLISEGNTFFSAKPYLHCVFNKDILNMDKVD
                     IENFFKSIEVKYSK"
     gene            1253..1435
                     /locus_tag="PF788_001796"
     CDS             1253..1435
                     /locus_tag="PF788_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304056.1"
                     /translation="MKDSIFWKKAFIPVYFIVAMLVFLLFRFYIKTDNFSIYLMSIFL
                     ICLGTASIIYNYKTNR"
     gene            complement(1417..1656)
                     /locus_tag="PF788_001797"
     CDS             complement(1417..1656)
                     /locus_tag="PF788_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304057.1"
                     /translation="MCVVIMRDVGLIDVEDCYDIFGMWCLVNGGLKLSFYGGLKMLFY
                     VGLEFVVLWRYKKPQQDLDLTVTYTFHTYIYRLVL"
     gene            1889..3553
                     /gene="alsS"
                     /locus_tag="PF788_001798"
     CDS             1889..3553
                     /gene="alsS"
                     /locus_tag="PF788_001798"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase AlsS"
                     /protein_id="HDG6304058.1"
                     /translation="MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGP
                     ELIVTRHEQNAAMMAQGIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGG
                     QVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFI
                     SIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSAEE
                     TNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTI
                     GYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEP
                     FINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSH
                     YIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQ
                     DLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGL
                     RVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN"
     gene            3590..4294
                     /gene="budA"
                     /locus_tag="PF788_001799"
     CDS             3590..4294
                     /gene="budA"
                     /locus_tag="PF788_001799"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HDG6304059.1"
                     /translation="MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNG
                     EVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEK
                     MLSENLFSAVKISGLFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFT
                     PELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDKDFTK
                     ANIDYKDIADEIREAE"
     gene            complement(4658..5083)
                     /locus_tag="PF788_001800"
     CDS             complement(4658..5083)
                     /locus_tag="PF788_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000769702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAP domain-containing protein"
                     /protein_id="HDG6304060.1"
                     /translation="MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTVDGY
                     HTVPYTISVDGITALHRTYFIFPENKNVLYQEIDSKVKNELASQRGVTTEKINNAQTA
                     TYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK"
     gene            5377..6192
                     /locus_tag="PF788_001801"
     CDS             5377..6192
                     /locus_tag="PF788_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
                     /protein_id="HDG6304061.1"
                     /translation="MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVI
                     TAVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEP
                     FLFEDIEDILRHISAQYNVEFIPQRAFEGNETHYNFYFHSTGNHNNDSRILEALVRYA
                     NDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMRKYNIPVKSILGFGDS
                     GNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY"
     gene            6403..7257
                     /locus_tag="PF788_001802"
     CDS             6403..7257
                     /locus_tag="PF788_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017431906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDG6304062.1"
                     /translation="MNKTNFGAYLNKSKSRKIYKIFDQNLKREFSYWQFRKLFKSYTR
                     QSDVHELKVCTQNDGTIEQIWIDEANQFGVSVTWKDNSIIGFVMRPLINYDAIKNETT
                     LKYAVPTTDCYEIFWGGDNELYNYHYLYPHQRYAIDLVIKENHKTYKNQGKVNTDYFC
                     FGKDIIAPANGTVEKVVNGVQDNSIGSTNESQFLGNYIVIKHAENEYSLIAHLHQYSI
                     IVNEGQNVKYGDIIGKVGNSGNSTEPHIHFQVMNDKNIEACTSLKIRFINNRELIKGD
                     VVCGLQAE"
     gene            complement(7317..9740)
                     /gene="hysA"
                     /locus_tag="PF788_001803"
     CDS             complement(7317..9740)
                     /gene="hysA"
                     /locus_tag="PF788_001803"
                     /EC_number="4.2.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hyaluronate lyase HysA"
                     /protein_id="HDG6304063.1"
                     /translation="MTYRIKKWQKLSTITLLMAGVITLNGGEFRSVDKHQIAVADTNV
                     QTPDYEKLRNTWLDVNYGYDKYDENNPDMKKKFDATEKEATNLLKEMKTESGRKYLWS
                     GAETLETNSSHMTRTYRNIEKIAEAMRNPKTTLNTDENKKKVKDALEWLHKNAYGKEP
                     DKKVKELSENFTKTTGKNTNLNWWDYEIGTPKSLTNTLILLNDQFSNEEKKKFTAPIK
                     TFAPDSDKILSSVGKAELAKGGNLVDISKVKLLECIIEEDKDMMKKSIDSFNKVFTYV
                     QDSATGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETPFNDKTQNDT
                     TLKSWIDDGFMPLIYKGEMMDLSRGRAISRENETSHSASATVMKSLLRLSDAMDDSTK
                     AKYKKIVKSSVESDSSYKQNDYLNSYSDIDKMKSLMTDNSISKNGLTQQLKIYNDMDR
                     VTYHNKDLDFAFGLSMTSKNVARYESINGENLKGWHTGAGMSYLYNSDVKHYHDNFWV
                     TADMKRLSGTTTLDNEILKDTDDKKSSKTFVGGTKVDDQHASIGMDFENQDKTLTAKK
                     SYFILNDKIVFLGTGIKSTDSSKNPVTTIENRKANGYTLYTDDKQTTNSDNQENNSVF
                     LESTDTKKNIGYHFLNKPKITVKKESHTGKWKEINKSQKDTQKTDEYYEVTQKHSNSD
                     NKYGYVLYPGLSKDVFKTKKDEVTVVKQEDDFHVVKDNESVWAGVNYSNSTQTFDINN
                     TKVEVKAKGMFILKKKDDNTYECSFYNPESTNSASDIESKISMTGYSITNKNTSTSNE
                     SGVHFELTK"
     gene            complement(9737..9904)
                     /locus_tag="PF788_001804"
     CDS             complement(9737..9904)
                     /locus_tag="PF788_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304064.1"
                     /translation="MRKIWVIDCLYASTFFVDCLTVDSHLYTLTNFEKLNHYLIIIFI
                     AHAQHKKETCQ"
     gene            10148..10564
                     /locus_tag="PF788_001805"
     CDS             10148..10564
                     /locus_tag="PF788_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDG6304065.1"
                     /translation="MKTKEVVALMNISQDTLRYYEKVGVIPPVNRDENGYRIYNDSDL
                     NWIYLVKNLRNAGVSIESLIEFCRLAQLPKNENIQAQQKQILNKQLEELNENLKTIHD
                     VRDLLQYKIDNYDNHIAKINASDNYDDNVERLWERK"
     gene            10634..11482
                     /locus_tag="PF788_001806"
     CDS             10634..11482
                     /locus_tag="PF788_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDG6304066.1"
                     /translation="MNHIEISKDVKIPVLGFGVFQIPQEQTAEAVKEAIKAGYRHIDT
                     AQSYLNETEVGQGIEASGIDRSELFITTKVWIENVNYEDTIKSIERSLQRLNLDYLDL
                     VLIHQPYNDVYGSWRALEELKENGKIKAIGVSNFGVDRIVDLGIHNQIQPQVNQIEIN
                     PFHQQEEQVAALQQENVVVEAWAPFAEGKNQLFQNQLLQAIADKYNKSIAQVILRWLV
                     ERDIVVLAKSVNPERMAQNLDIFDFELTEEDKQQIATLEESNSQFFSHADPEMIKALT
                     SRELDV"
     gene            11702..11827
                     /locus_tag="PF788_001807"
     CDS             11702..11827
                     /locus_tag="PF788_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304067.1"
                     /translation="MRYIHFSIITLITGIIMHITMYFVPFESRKMPLFMTIIFTI"
     gene            12089..12696
                     /locus_tag="PF788_001808"
                     /pseudo
     CDS             12089..12696
                     /locus_tag="PF788_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500926.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3885 domain-containing protein"
BASE COUNT         4550 a         1775 c         2121 g         4269 t
ORIGIN      
        1 tataaaaaaa acgttgtatt ggataaagta tattactctg aagtttataa atatagtgat
       61 aatttgataa aagtattctc tgaagacgtt tggaacataa tggggtataa aaaatataat
      121 gaatatttta caaacagaga tgatactaca ttaaaaatta ctaatttata tattgggcaa
      181 tcttttggta cagagggtaa tagaaatgtc attgatagaa tagggaaagg tcatgaaaaa
      241 ttacaagaaa ttatgactta tcagccagaa aatagaaaga ctgtcttaat attttacaag
      301 atacagcctg acaatattta tattacaaac caatatggta aagaggctgt gtctcgatta
      361 aaaagaattt tagagcaaag tatacctaat aaagaatata ttgatttatc agagatatca
      421 ttaattacat tttttaaacc agaatataat aaacaacatg tgaatgagga gtttaattct
      481 ttatcttctt cgaaaataaa gaatttagcc aaagaaaatg atggtattat tatttattta
      541 aattttaagg atgttaatta tcaactgata agtgaaggca atactttttt ttctgcaaaa
      601 ccatatttgc attgtgtgtt caataaagat attttaaata tggataaagt tgatatagaa
      661 aattttttca aaagtataga agtcaaatac agtaaataag atcaattatt gaatccaccg
      721 accagcagat ttttttaaaa aattaatacc ccgttaatac cctttgcttc aatttgatga
      781 aaatcaatga aattcaaaat tgaagaaatc ctttaatatc aaggtgtacg acagtctata
      841 taatcatgcg aaattctaaa attttctgaa cgtaaaaaaa caaattctta aagcagctcg
      901 tcgttcacct caattctcaa aacgttaatt gtcggacgat atatatacaa aacacctcga
      961 tgttatgtcg aggtgttttt ttgcgtttgt gtggggaata tggaatagag tataaatgaa
     1021 ttaatgtctc aggtatagaa ttaattcaac tatgaattat tgatttacac gtataatttg
     1081 tacatgctta cacaatcaaa agtgtacatt attaaattgt catttagctt gcggagaccg
     1141 tacgatagtg ttctaataat agatattcaa gggaaagagc tatcggatga taaccagatg
     1201 ataactcaag aaccatgatt taagagtgtt atcaaaataa ggagtgactt aattgaaaga
     1261 ttctatattt tggaagaaag cttttattcc tgtttatttt attgttgcga tgctggtgtt
     1321 tctacttttt aggttttata ttaaaacaga taacttttct atatatttaa tgagtatctt
     1381 cttaatttgt ttaggaactg cttctatcat ttataactat aaaaccaatc gataaatata
     1441 agtatgaaat gtataagtca cagttagatc taagtcttgc tgtggctttt tatatctcca
     1501 taaaacgaca aattcaagcc cgacataaaa cagcattttc agcccaccat aaaacgacaa
     1561 tttcagcccg ccattgacta aacaccacat cccaaaaata tcgtaacaat cctctacatc
     1621 aatcaatcca acatccctca taatcacaac gcacaaaatc tattcatgca tttttggaat
     1681 acttagtatt acaaataacg atttttattc atctaacaaa ggttatataa tgtactgaag
     1741 gcaattttta tgtattacaa atctaatcgt acatgtaaaa ttttgataaa catcattaat
     1801 tttgcgtaac tatcattaga ttacaaatca caaagtaatt acatgtaata cacatctata
     1861 catcacattt gaagggaaat gaatataaat gactgataaa aagtacactg cagccgatat
     1921 ggttattgat actttgaaaa ataatggggt agaatatgtt tttggtattc cgggtgcaaa
     1981 gattgactat ctatttaatg ctttaattga tgatggtcct gaacttattg tcactcgtca
     2041 tgaacaaaac gccgcaatga tggcgcaagg tattggaaga ttaacaggca aaccgggtgt
     2101 agtacttgtt acaagtggtc ctggtgtaag taatttaact actggattat taaccgcaac
     2161 atctgaaggg gatcctgtat tagcgttagg tggccaagtg aaacgtaatg atttattacg
     2221 attaacgcat caaagtattg ataatgctgc gctattaaaa tattcatcaa aatatagtga
     2281 agaagtacaa gatcctgaat cattatcaga agttatgaca aatgcaattc gaattgctac
     2341 ttcaggaaaa aatggcgcaa gttttattag tattccgcaa gacgttattt cttcaccagt
     2401 tgaatctaaa gctatatcac tttgccaaaa accaaattta ggagtaccga gtgaacaaga
     2461 tattaatgat gtcattgaag cgattaaaaa tgcatcattt cctgttttat tagctggtat
     2521 gagaagttca agtgcagaag aaacaaatgc cattcgcaaa ttagttgagc gcacgaattt
     2581 accagttgta gaaacattcc aaggtgcagg tgtaattagt cgtgaattag aaaatcattt
     2641 cttcggtcgt gtgggcttat tccgcaatca agttggtgat gaattattac gtaaaagtga
     2701 tttagttgtt acaatcggtt atgatccaat tgaatacgaa gctagtaact ggaataaaga
     2761 attagaaaca caaattatca atattgacga agttcaagct gaaattacta attatatgca
     2821 accgaaaaaa gagttgattg gtaatattgc taaaacgatt gaaatgattt ctgaaaaagt
     2881 ggatgagcca tttataaatc aacaacattt agacgaatta gaacaattaa gaacacatat
     2941 tgatgaagaa actggtatta aagcgacgca tgaagaagga attctacatc cagtggaaat
     3001 tattgaatct atgcaaaagg tattaactga tgatactact gtaacagttg atgttggaag
     3061 tcactatatt tggatggcac gtaatttcag aagttacaat ccaagacatt tattatttag
     3121 caatggtatg caaacgcttg gtgtagcatt accgtgggca atttcagctg cacttgtgcg
     3181 ccctaatacg caagttgtgt ccgttgctgg cgatggtggc tttttatttt catcacaaga
     3241 tttagaaacg gccgtacgta aaaatttaaa tatcatccag cttatttgga atgatggaaa
     3301 atataacatg gttgaattcc aagaagaaat gaaatataaa cgttcgtcag gtgtagactt
     3361 cggtcctgta gattttgtaa aatatgcaga atcatttggc gcgaaaggtt tacgagttac
     3421 taatcaagaa gaattagaag cggcaattaa agagggctat gaaacagatg gtccagtatt
     3481 aattgatata cctgtaaatt acaaagataa tatcaaactt tcaacaaata tgttacctga
     3541 cgtatttaac taaaataaag ataaatgtta aagaggagtg ggagatttta tgactaatgt
     3601 tttataccaa catggtacat taggcacatt aatggcagga ttattaaaag gaactgcatc
     3661 aataaatgaa ttattgcaac atggtgactt aggtatcgct acactaacag gttcaaacgg
     3721 tgaggtaatc tttttagatg gaaaagctta ccatgcaaat gaacataaag aatttgtaga
     3781 attaaaaggt gacgagttaa caccatatgc aactgtaact aaatttgtag cagatacaag
     3841 ctatgaaacg aaagataaat cttcagaagc agtttttgca gaaattaagg aaaagatgtt
     3901 gagtgaaaat ttattttcag cagtaaaaat ttcaggctta tttaaaaaaa tgcatgtacg
     3961 tatgatgccg gctcaagaac caccttatac acgtttaatc gattcagcta gaagacaacc
     4021 tgaacaaact gaaacgtatg tcaaaggttc agtcgttggt ttctttacac cagaattatt
     4081 ccatggtatc ggatcagcag gatttcatgt acactttgcg aatgatgatc gtaactttgg
     4141 tggacatgtc ttagattttg aagtagaaga tgttaaagta gaaatccaaa atatagaaac
     4201 atttgaacag cattttccaa ttcaagataa agatttcact aaagcaaata ttgactataa
     4261 agatattgca gacgaaatta gagaagctga ataatgaatc cagaaatata atgacggttt
     4321 atgaaaattg acttcataat gcgcgattta gaaatgatag tttgtaaata tgattaacca
     4381 tgactacaat agaacaaata tatttataat tacgtctaag taataaaata aatcccttca
     4441 ctattagcag tagtgagggg atttattagg ttccagatat ttgagatttg ctgttatgtt
     4501 tagattataa attgtggtac acactcatat aaaatttact attgtatagg ccaatctgtt
     4561 actacgagaa gcaaacaaca ataatttaca agttcaataa ctaaaaagac aaacgccaat
     4621 ttttcagcgc ttgccctata aaactatttt caaattatta tttaactaca atttgtatct
     4681 gtttgattgt acttggatca attgaatttt tagcgtcgtc atttttcttt agattcacta
     4741 cttttttatt accatcattc aaagtaagcg tataagttgc tgtttgggca ttattaattt
     4801 tttctgttgt aacaccacgt tgagaagcta attcattttt tactttactg tcaatttctt
     4861 gataaagaac atttttattt tctgggaaga taaagtaagt tcgatgtaat gcagtaatac
     4921 catctactga aattgtgtaa ggaacagtgt gataaccatc cacagtcatt tctttatagc
     4981 cgttattact atctgcagat gcttcgtgac tcggtaatgc agctccgacc gttgataata
     5041 atcccaatgc taaagtggca gtaacaaatg attttagttt catatctcaa tctccttttc
     5101 gggttgtatg atattacact atttgtataa cacgtttcat aaagtttaaa acatactttt
     5161 tgcatttttt atattttaat ttttagtaat agtttttaac gagggatatg actcgtgcat
     5221 tttgaaaagt ggtaagcaat gtttttagtt tatagggatt gattagttgt atataataat
     5281 catgaaaagc atatagtcga tcttatactt ttaattgaga cttatagtgt atttaagtta
     5341 tagataaatt cattaaaata ttatggggga atgagtatgt caaagcgtct attattgttt
     5401 gattttgatg aaacatattt taaacataat acaaatgaag aagatttaag tcatttaaga
     5461 gaaatggaaa aattgttgga aaaactaact aataataatg aagtgatcac tgctgtattg
     5521 acaggaagta catttcaaag tgtcatggat aaaatggatc aagttaatat gacgtttaaa
     5581 ccattacata tcttttctga tttgagttct aaaatgttca cttggaataa tggcgaatat
     5641 gttgaatcag aaacatataa aaagaaagtc ttgagcgaac catttttatt tgaagatatt
     5701 gaagatatat tacgtcatat ttctgcgcaa tataatgtcg aatttattcc acaaagagca
     5761 tttgaaggta atgaaacaca ttataatttt tattttcatt caacaggtaa tcacaacaat
     5821 gatagtcgta tcctagaagc acttgtcaga tacgcaaatg accaaaacta tacagcgaga
     5881 tttagtcgaa gcaatccatt agctggtgat cctgaaaatg cgtatgatat tgacttcaca
     5941 ccgtcaaatg ctggaaaatt atatgctact caatttctga tgaggaaata taatatacca
     6001 gtaaaatcaa tattaggttt tggagatagc ggcaatgacg aagcatattt aagctatctt
     6061 gaacatgcat atttgatgtc gaatagtaga gatgaagcat taaagcagaa atttagatta
     6121 acaaaatatc catattatca agggataaca ctgcatgtta aagaatttgt tgaaggtaag
     6181 tatgattatt gattagttga gtgatatgta tactttttaa gtgcaaatat taatatttaa
     6241 gggatgatta gaaaatatgg tgaatcgact acactttagc tttaaaaaat tatttatatg
     6301 ttgatttatc caattaagtg tagacgattc aggtagcgca aaaatgacgc aggaactgga
     6361 gaaagaattg ataccaaaat taatataata ggttaagtat atatgaataa aacaaacttt
     6421 ggggcttatt taaataaaag taagagcagg aaaatatata agatttttga tcaaaatttg
     6481 aagcgagagt ttagttattg gcagtttagg aaacttttca aatcttatac aaggcagtct
     6541 gatgtacatg aattaaaagt gtgtactcaa aatgatggta ctattgagca aatatggata
     6601 gatgaagcaa atcaatttgg agtgtcagtg acttggaaag ataatagtat tatcggattt
     6661 gttatgcgtc cgttaattaa ttatgatgcg attaagaatg aaacgacttt aaaatacgca
     6721 gtgccgacaa cagattgcta tgagattttt tggggtggag ataatgaatt atataattat
     6781 cactatttat acccacatca aaggtatgct attgatttag ttattaaaga aaatcataaa
     6841 acatataaga atcaaggaaa agtaaatact gattattttt gttttggaaa agatatcatt
     6901 gcgccagcaa atggtacagt tgaaaaagta gtgaatgggg ttcaagacaa cagtattgga
     6961 agtacgaatg aatcacagtt tttaggaaat tatattgtaa ttaagcacgc agaaaatgag
     7021 tatagcttaa tagctcattt acaccaatat tcaatcattg tgaatgaggg gcaaaatgtt
     7081 aaatatggtg atatcattgg gaaggttggg aattctggca attctactga acctcatata
     7141 cattttcaag taatgaatga taagaatatt gaagcatgta catctttaaa aattcgattt
     7201 ataaataatc gagaacttat caaaggggat gtggtctgcg gattacaagc tgaatgatgg
     7261 cgatacttat aaaatctcga cactataaaa atggtatagt gtcgagattt tcttgcttat
     7321 ttagttaatt caaagtgcac gccggattca ttagaagtcg acgtattttt gtttgtaata
     7381 gagtaaccgg tcattgaaat tttagattca atatctgaag cggaatttgt agattcagga
     7441 ttatagaagc tacattcata agtgttatca tctttctttt taagtataaa catacctttg
     7501 gctttaactt cgactttagt gttgttaatg tcaaaagttt gagtgctatt actataatta
     7561 acaccagccc aaaccgattc attatctttc acaacgtgga agtcatcttc ttgcttaacg
     7621 acagttactt catctttttt tgtcttaaag acatctttag ataagcctgg atacaacaca
     7681 tatccatatt tattgtcaga attagaatgc ttttgagtta cttcataata ctcatcagtt
     7741 ttttgtgtat ccttttgact tttatttatt tctttccact taccagtatg actttctttt
     7801 tttacagtta ttttcggttt gtttaaaaaa tgataaccga tgttcttttt ggtatctgtg
     7861 gactctaaaa agactgaatt gttttcctga ttatcagaat tggttgtttg tttatcgtct
     7921 gtatataacg tatacccatt cgctttgcga ttttcaatcg ttgtaactgg attctttgat
     7981 gaatcagtac ttttaatgcc agttcctaag aagacaattt tatcgtttaa tatgaaatat
     8041 gattttttgg cagttaaagt tttgtcctga ttttcaaaat ccattccgat actagcatgt
     8101 tggtcatcaa cttttgttcc gccaacaaaa gttttactcg actttttatc atccgtatct
     8161 tttaatattt cattgtctaa agttgttgta cctgataaac gtttcatatc ggctgtcacc
     8221 cagaagttat catgatagtg tttgacatcg ctgttatata aataagacat tccagcacca
     8281 gtgtgccaac cttttaaatt ctctccgttg atactttcat agcgtgctac gtttttcgac
     8341 gtcatactta aaccaaatgc aaagtctaag tctttgttat gataggtgac acgatccatg
     8401 tcattatata ttttaagttg ttgtgttaat ccgtttttag aaatactgtt atctgtcatt
     8461 aaagacttca ttttatctat gtccgaatat gaatttaaat aatcattttg tttataactt
     8521 gaatctgact ctactgaaga tttgacaatc tttttatact tagcttttgt tgaatcatcc
     8581 atggcatcac ttaatctcaa caatgatttc attactgttg cagatgctga gtgactggtt
     8641 tcattttcac gactgatagc tctacctcgt gataaatcca tcatttcacc tttataaatg
     8701 agtggcataa atccgtcgtc aatccatgac tttaaggttg tatcattttg ggttttatca
     8761 ttaaaaggtg tttcttttat catcggcatc atttgagaaa tcccctctaa gagtacaacg
     8821 ccataagcac cagtgtatgg aacgtcttga tgatcaatgt aagagccatc tttataaaat
     8881 ccattacgtt ctttaccagt ggcagaatct tgaacgtaag tgaagacttt attaaatgaa
     8941 tctatagact ttttcatcat atctttatct tcttcgataa tacattctaa aagtttcacc
     9001 ttagaaatgt ctactagatt tccgccttta gcaagttcag cttttcctac agaagataat
     9061 attttgtcac tatctggggc gaaagtttta ataggggcag tgaatttttt cttttcttca
     9121 tttgaaaatt gatcattcag caatataagc gtatttgtta atgatttagg tgttccaatt
     9181 tcataatccc accaatttaa gttggtattc ttgccagttg ttttagtaaa attctcactt
     9241 aattctttta cttttttatc tggttctttt ccatatgcat ttttatgcag ccactcaagg
     9301 gcatctttca ctttcttctt attttcgtca gtatttaaag tggttttagg attcctcatc
     9361 gcttctgcga ttttctcaat attacgatag gtacgagtca tatgagaaga attagtttca
     9421 agggtttccg ctcctgacca caagtatttc ctaccacttt cagttttcat ttccttgagt
     9481 aaattcgtcg cctctttctc tgtagcatca aacttcttct tcatatctgg attattctca
     9541 tcatacttat cataaccata gttaacgtcc agccatgtgt tcctcaattt ttcataatct
     9601 ggcgtttgaa cattcgtatc agccacagcg atttgatgtt tatcaacact tctgaattca
     9661 ccaccattca aagtaatcac accagccatt aataacgtaa tggtggataa tttttgccat
     9721 ttctttattc tatatgtcat tgacatgtct cctttttgtg ttgcgcgtgc gcaatgaata
     9781 ttatgattaa ataatgattc aatttttcaa aattcgttaa cgtatacaaa tgactgtcta
     9841 ctgtcaaaca atccacaaag aatgttgatg catataaaca atcgatcacc caaattttcc
     9901 gcatcaccca aaaattgcaa ctaaaataat tttcaaaaaa ttaaatatta tcaatcttag
     9961 tgattatatc attttaaata tttaagttat acaattttta aagtaattaa aaacgatgaa
    10021 atgtaaaatg ttaaaaaaga gacaaattta aatttgagta ataaaataag aagtattcaa
    10081 acgaagatga caatatataa agcaacatta ctttagacga ccaaacataa ctgaaaggat
    10141 agtcgcaatg aaaactaaag aagtcgtagc gctcatgaat atatctcaag acactttaag
    10201 atattatgaa aaggttggtg tgattccacc agttaatcga gatgaaaatg gatatagaat
    10261 atataatgat agtgatttaa attggattta tttagtgaaa aatttgcgaa atgcaggcgt
    10321 cagtattgaa tcgcttatcg aattttgcag gttagcgcag cttcctaaaa atgaaaatat
    10381 tcaagcacag caaaagcaaa ttttaaataa gcaactcgaa gaattaaatg aaaacttaaa
    10441 gacaattcat gatgtgagag atttactaca atataaaatt gataattatg ataatcatat
    10501 tgctaaaatc aatgctagtg ataattatga tgacaatgtt gaacgtcttt gggagagaaa
    10561 gtaaacctat ggcttgctat agagttcgct ccatggttta tagtggacat acaagataaa
    10621 ggaggttcat tttatgaatc atattgaaat aagtaaagat gtaaagatac cagtattagg
    10681 tttcggagta tttcaaattc ctcaagaaca aacagcagaa gcggttaaag aagcaattaa
    10741 agcgggttat agacatattg atacagcaca aagttattta aatgaaactg aagtaggtca
    10801 aggtattgaa gcttcaggta ttgatagaag tgaactattc attacgacta aagtatggat
    10861 tgaaaatgtt aactatgaag atactatcaa atcaatcgaa cgatcattac aacgattaaa
    10921 tttggactat cttgatctag tgcttattca ccaaccttac aatgacgtat atggctcatg
    10981 gcgtgcatta gaagagttaa aagaaaatgg taaaattaaa gcaatcggtg tatctaactt
    11041 cggcgttgat cgaattgtag atttaggtat tcacaatcaa attcaaccac aagtgaacca
    11101 aatagaaatt aatccattcc atcaacaaga agaacaagtt gcagcacttc aacaagaaaa
    11161 tgttgtggta gaagcttggg caccatttgc agaaggtaaa aatcaattat tccaaaatca
    11221 attgttgcag gccattgcag ataaatacaa caaatcaatt gcacaagtta ttttacgctg
    11281 gttagtagaa cgtgacattg ttgtactcgc aaaatcagtg aatccagaac gtatggctca
    11341 aaacttagat atatttgatt ttgaacttac agaagaagat aaacaacaaa ttgcgacatt
    11401 agaagaaagt aatagccaat ttttctcaca tgctgatcca gagatgatta aagcacttac
    11461 aagcagagaa ttagatgttt aatcataata taacaaagta aatcatttac attacactaa
    11521 cctgaaactt ggatgttaaa gtctatgttt caggttattt tttactctta aaaagtgaaa
    11581 ggagcaagca aataagttat tatatatttt tatattatgt aataacgtaa ctaaggttat
    11641 aattagataa ttaatatgtc ttggaattaa ttatttaata agttgtatag caggtggcga
    11701 tatgagatat atacactttt ctattattac attaattaca ggtatcatta tgcatattac
    11761 aatgtacttt gtaccatttg aatctcggaa aatgccacta tttatgacga taatttttac
    11821 aatctaaaag cagtaaagac tcataatata accaaaaaca ttaataaaag tttgttaaat
    11881 gataagggga tgagtattgg tgaatttact caaaaggttt aagggaaaaa tcctacctgg
    11941 agagattcaa aaactaaatg gactatttcc aaaaataaag ggcaatcaca tggtggttct
    12001 tattggaagt taataaataa caaaggaaaa agaatagctt ctttaactaa agaaggaaaa
    12061 atcttaaggg aataaggtgt tgtaaattat gtgctttgat ataaataatt tggatataaa
    12121 aaagttgaat tttagaaagg taaaaaacgc aattcattta agtttaagtg gcgataaata
    12181 ccagtttttg gaggacggta aaactatcaa taatacttat ttttagctgt atatgataat
    12241 gcaataaaca tttttgaaga tttgttttcg ccttctgatt ctataaattt ggttcatgta
    12301 gtatatgttt atagtgaacc ttataagaaa acaaatgtta taaaaaaatt tacatcgtta
    12361 acaatagatg aattgtatta ctttaaagaa tataaaaagg agaaggatga taatattttg
    12421 tgcgaggagt tttcatataa gtgttccata aaagatataa aatataaaaa attattaaaa
    12481 gctatatcca atcaagactt taaagggtta gttccaaata tcaatcagaa tgataattat
    12541 tctgaaatat atataattaa caatactaaa aacttaatat atcatttata tgatgataga
    12601 ggtctatggc tagcttttaa taataatgaa gattatgcaa gatattctga aaaatataat
    12661 gatttaatat cggaatttga taatgaagat atctaatttt ttaatattcg tagct
//
LOCUS       DAMQWL010000072        12691 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.072, whole genome shotgun sequence.
ACCESSION   DAMQWL010000072 DAMQWL010000000
VERSION     DAMQWL010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 12691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12691
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.072"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(216..1442)
                     /gene="ftsW"
                     /locus_tag="PF788_001809"
     CDS             complement(216..1442)
                     /gene="ftsW"
                     /locus_tag="PF788_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HDG6304068.1"
                     /translation="MKNFRSILRYIGKTSKFIDYPLLVTYIVLSLIGLVMVYSASMVP
                     ATKGTLTGGIDVPGTYFYNRQLAYVIMSFIIVFFIAFLMNVKLLSNIKVQKGMIITIV
                     SLLLLTLVIGKDINGSKSWINLGFMNLQASELLKIAIILYIPFMISKKMPRVLSKPKL
                     ILSPIVLALGCTFLVFLQKDVGQTLLILIILVAIIFYSGIGVNKVLRFGIPAVLGFLV
                     VFVIALMAGWLPSYLTARFSTLTDPFQFESGTGYHISNSLLAIGNGGVFGKGLGNSAM
                     KLGYLPEPHTDFIFAIICEELGLIGGLLVITLEFFIVYRAFQFANKTSSYFYKLVCVG
                     IATYFGSQTFVNIGGISATIPLTGVPLPFISFGGSSMISLSIAMGLLLIVGKQIKVDQ
                     QRKKQQQKVDIRRQFN"
     gene            complement(1756..2031)
                     /locus_tag="PF788_001810"
     CDS             complement(1756..2031)
                     /locus_tag="PF788_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaN family protein"
                     /protein_id="HDG6304069.1"
                     /translation="MAKQATMKNAALKQLTKDADEILHLIKVQLDNLTLPSCPLYEEV
                     LDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELSKLHEAFTLV"
     gene            2172..2654
                     /locus_tag="PF788_001811"
     CDS             2172..2654
                     /locus_tag="PF788_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304070.1"
                     /translation="MIQIKGAVKFPITLDSTTWIFDDRKVSIEDLEKGVFDGSKPIDF
                     EDNHEWNRAILEGQTNPPTLNSEIKYKKRAMLEGSFVINMTPFFKHSEPHDSATTIRL
                     SNEHDHLDIPIDLLPYLFFQFAKDGKRLYSDNGVDSFIYNQEDGYSYRINHVTHIEVI
                     "
     gene            2656..2823
                     /locus_tag="PF788_001812"
     CDS             2656..2823
                     /locus_tag="PF788_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaI family protein"
                     /protein_id="HDG6304071.1"
                     /translation="MRQVQCIICDAKVFIDERTTESKRLKNNPIRTFMCDDCKSRLDT
                     PKQRAQHYPLD"
     gene            complement(2963..4810)
                     /gene="typA"
                     /locus_tag="PF788_001813"
     CDS             complement(2963..4810)
                     /gene="typA"
                     /locus_tag="PF788_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDG6304072.1"
                     /translation="MTNKREDVRNIAIIAHVDHGKTTLVDELLKQSGIFRENEHVDER
                     AMDSNDIERERGITILAKNTAVDYKGTRINILDTPGHADFGGEVERIMKMVDGVVLVV
                     DAYEGTMPQTRFVLKKALEQNLKPVVVVNKIDKPSARPEGVVDEVLDLFIELEANDEQ
                     LEFPVVYASAVNGTASLDPEKQDDNLQSLYETIIDYVPAPIDNSDEPLQFQVALLDYN
                     DYVGRIGIGRVFRGKMRVGDNVSLIKLDGTVKNFRVTKIFGYFGLKRLEIEEAQAGDL
                     IAVSGMEDINVGETVTPHDHQEALPVLRIDEPTLEMTFKVNNSPFAGREGDFVTARQI
                     QERLNQQLETDVSLKVSNTDSPDTWVVAGRGELHLSILIENMRREGYELQVSKPQVII
                     KEIDGVMCEPFERVQCEVPQENAGAVIESLGARKGEMVDMTTTDNGLTRLIFNVPARG
                     MIGYTTEFMSMTRGYGIINHTFEEFRPRIKAQIGGRRNGALISMDQGSASTYAILGLE
                     DRGVNFMEPGTEVYEGMIVGEHNRENDLTVNITKTKHQTNVRSATKDQTQTMNRPRIL
                     TLEEALQFINDDELVEVTPESIRLRKKILNKNVREKEAKRIKQMMQENE"
     gene            4912..5103
                     /locus_tag="PF788_001814"
     CDS             4912..5103
                     /locus_tag="PF788_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008530239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaF family protein"
                     /protein_id="HDG6304073.1"
                     /translation="MKQKKSKNIFWVFSILAVVFLVLFSFAVGASNVPMMILTFILLV
                     ATFGIGFTTKKKYRENDWL"
     gene            complement(5257..6084)
                     /locus_tag="PF788_001815"
     CDS             complement(5257..6084)
                     /locus_tag="PF788_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HDG6304074.1"
                     /translation="MALYGFAQGLIQEAGIRIKQLMEQNLTIETKSNPNDLVTNVDKA
                     TEDFIFDTILETYPNHQVLGEEGHGHDIDTSKGTVWIVDPIDGTLNFVHQQENFAISI
                     GIYIDGKPYAGFVYDVMADVLYHAKVGEGAYRGSQPLKPLNDSNLRQSIIGINPNWLT
                     KPILGEIFKEIVNDSRSARAYGSAALEIVSVATGNLEAYMTPRLQPWDFAGGLVILYE
                     VNGQASNLLGEPLTISGPNSILVGNRGLHQEISNDYLEPHHDALIQLHEQRFKRKSK"
     gene            6241..6855
                     /locus_tag="PF788_001816"
     CDS             6241..6855
                     /locus_tag="PF788_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YktB family protein"
                     /protein_id="HDG6304075.1"
                     /translation="MTKYTFKPKDFKAFNVEGLDARMEALNEYIRPQLRELGEYFSDF
                     FTSQTGETFYPHVAKHARRSVNPPKDTWVAFATNKRGYKMLPHFQIGMFEDQLFVMFG
                     IMHEAKDKATRAKVFERKFKAIQQLPDDYRVCLDHMKPDKPFIKDLTDDDLIEAIQRA
                     INVKKGEFFIARAITPQDKRLKSDKAFIAFLEETFDQFLPFYSA"
     gene            7039..8391
                     /locus_tag="PF788_001817"
     CDS             7039..8391
                     /locus_tag="PF788_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HDG6304076.1"
                     /translation="MNNKRHSTNEQLSLDEINNTIKFDHRSSNKQKFLSFLGPGLLVA
                     VGYMDPGNWITSMQGGAQYGYTLLFVILISSLSAMLLQSMTVRLGIATGMDLAQMTRH
                     YLSRPIAIIFWIIAELAIIATDIAEVIGSAIALNLLFNIPLIVGALITVLDVFLLLFI
                     MKYGFRKIEAIVGTLIFTVLFIFIFEVYISSPQLNAVLNGFIPHSEIITNNGILYIAL
                     GIIGATIMPHNLYLHSSIVQSRTYSRHNNEEKAQAIKFATIDSNIQLSIAFVVNCLLL
                     VLGASLFFNSNADDLGGFYDLYHALKTEPVLGATMGAIMSTLFAVALLASGQNSTITG
                     TLAGQIVMEGFLRLHIPNWLRRLITRSLAVIPVIVCLIIFKGNAAKIEQLLVFSQVFL
                     SIALPFCLIPLQLATSNKDLMGPFYNKTWVNIISWTLIIILSILNVYLIVQTFQELQS
                     "
     gene            complement(8473..8892)
                     /locus_tag="PF788_001818"
     CDS             complement(8473..8892)
                     /locus_tag="PF788_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HDG6304077.1"
                     /translation="MNRKPELIMAWIANSISIIYLLVMGLSYFSLKSGNASQREELAK
                     QLSQNGGKVSLDMLQTTMGALAIILLISTLYGIFATICIKGRRKLSIILFVIAIIVSL
                     MALNLIAIVLWVIVMIMLISKKESKETTHKDDEYIYH"
     gene            complement(9175..10194)
                     /locus_tag="PF788_001819"
     CDS             complement(9175..10194)
                     /locus_tag="PF788_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HDG6304078.1"
                     /translation="MTGEQFTQIKRPVSRLTEKVLGWLCWVMLLVLTVITMFIALVSF
                     SNNTSIANLENTLNNNAFIQQLLAGNGYNTTQFVIWLQNGIWAIIVYFIVCLLISFLA
                     LISMNIRILSGFLFLISAIVTIPLVLLIVTLIIPILFFIIAMMLFIRKDKVEMVAPQY
                     YEEYNGPIYDYREPVYERPQPKDDYYDVPKYEKELDKSNTVYDQEQERDKYDQFPKRA
                     VESEYNHDERTEEEPSVLSRQAKYKQKSTEELGIEDDGYYAEPEVDPKELKAQQKREK
                     AEIKAKKKEKRKAYNQRMKERRKNQPSAVSQRRMNFEERRQIYNNDISEERNSSEVKD
                     KKEQE"
     gene            complement(10268..11341)
                     /locus_tag="PF788_001820"
     CDS             complement(10268..11341)
                     /locus_tag="PF788_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein"
                     /protein_id="HDG6304079.1"
                     /translation="MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGE
                     YIDPELIKKFEKETGIQVVYETFDSNEAMEAKIRNGGTHYDVAFPSEYTVQKLKRDHL
                     LLPIDHNKVPNIKNLDSDYMNMSFDRGNKYSLPYFFGTVGILYNKEKYPNESFDSWKS
                     LYNPKFKNQILLVDGAREIIGMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVG
                     DEITMMLQQNEGNIAVVWSGVAAPLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKE
                     GAYKFMNFLLDAKNNKQNTEFVGYATPNKAARQLLPKEIKDDHRFYPTKKEQERLEVY
                     KDLGPEVLSEYNENFLNFKMSLK"
     gene            complement(11341..12150)
                     /locus_tag="PF788_001821"
     CDS             complement(11341..12150)
                     /locus_tag="PF788_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304080.1"
                     /translation="MKWYGKLYIGILLAILYIPIFFLMFYSFNSAGNMIHFEHFTLEH
                     YQSLFQNDHLMSVIFNTIAVALLAASISTVIGTFGAIAIYYLRNKKFKVTLLTLNNVL
                     MVSSDVVIGASFLIMFTTIGHFTGLGLGFWTVLISHIAFCIPIVVIIVLPQLYEMNNN
                     MLNAARDLGATEPQLLSNIIIPNILPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLS
                     VEVYAMARKGISMEINAISTLLFAVIVLGILGYYLIQYVINKKKLIKRGVK"
     gene            complement(12156..>12691)
                     /locus_tag="PF788_001822"
     CDS             complement(12156..>12691)
                     /locus_tag="PF788_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304081.1"
                     /translation="ILLMIMIIPTWINLLLKTYAFIGLLSHDGVINQFFHLFNLPSFN
                     LLFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFYTFRKVIMPLT
                     KEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTIQNYGMGSTIAIFLI
                     VFMAFILIITKSSNGRG"
BASE COUNT         4285 a         2203 c         1780 g         4423 t
ORIGIN      
        1 tttagttata attatacgtt gttttgttta taaaatttga taatcatgag taatctcgta
       61 atatcaaaac aaaaaggaag ttaagcgttg tttggttgcc taacttccgt tattgaactc
      121 atcagtccaa tttgacaaag agtatataaa tagccaatgt ttagcattgc ttaatgacag
      181 aagtcatctc gtactaaata ttggctagta tttttttaat taaattgtct tcttatatca
      241 actttttgtt gttgtttctt tcgttgctgg tctactttga tttgtttacc tacaatcaga
      301 agtaaaccca tagcaatact taaactaatc attgatgatc caccaaagct gataaatggc
      361 aatggcacac cagttaatgg aattgttgcc gaaataccgc caatgtttac aaacgtttga
      421 cttccaaagt atgtggcaat cccaacacac acaagtttat aaaaatatga tgatgtttta
      481 tttgcaaact ggaaggcacg atatacaata aagaactcta aagtaataac tagcaatcct
      541 ccgattaaac ctaattcttc gcaaataatt gcaaaaataa aatctgtatg tggttctggt
      601 aaatagccca atttcattgc actatttcct aatccttttc caaatacgcc accgttacct
      661 atcgcaagca atgaattgga aatatggtat ccagttcctg attcgaattg gaatggatct
      721 gttagcgtac taaatctggc agttaaataa cttggtaacc aaccagccat taatgcaatg
      781 acaaatacta ctaagaatcc tagcactgct ggtataccaa atcttaggac tttgtttacc
      841 ccaattcctg aataaaaaat gatcgcaact aaaataatta atattagtaa tgtttgccct
      901 acgtcttttt gtaggaaaac taaaaacgta caacctaatg ctaatacaat aggacttaaa
      961 attaattttg gtttacttaa tactctaggc atttttttac tgatcataaa tgggatatat
     1021 aatatgattg caatttttaa taactcagat gcctgtaagt tcataaatcc taagtttatc
     1081 caacttttag aaccattaat atctttacct attactaacg tcagtaataa tagtgagacg
     1141 atagttataa tcataccttt ttgcacttta atattactca gtaatttaac attcattaaa
     1201 aatgcaataa aaaatacaat tataaaactc attatgacat atgctaattg tcggttgtaa
     1261 aaatacgttc ctggaacatc gataccacca gtcaatgtgc ctttagttgc tggaaccata
     1321 cttgcactat ataccatcac taatccaatt aaactcaata caatatatgt aactaataac
     1381 ggataatcaa taaactttga ggttttacca atataccgta aaatacttct aaaattcttc
     1441 atatattcag tcatccaatt ctacaattta tacttcaaat gatttcgttt tatactttaa
     1501 ttttaaaaat ccatgttact tattatatac atgacacagt cataatcaca aatattaaca
     1561 ggtctcttga ggtaatttat agaatatttg tttacttaat atcgtgaatt gctaaaaccc
     1621 aataaaagtg actgacatgt catcaagaag acaacataac agccacttta atcagtaatt
     1681 aaactataaa tataaaatcg gcgcagctca attgtcgata tctcacgcca ttttaatatg
     1741 cttatatatt aaaccttaaa caagtgtaaa agcttcatgt aattttgaaa gttctttctc
     1801 aagacgtaac ataatttgtt tgccatcttc gcggtcaact aaacctaatt taacagcaaa
     1861 atcaacttct ttttgaagtc caaacatttg tgtatctagt acttcttcat ataatgggca
     1921 tgaaggtaat gttaaattat ctagttgaac tttaatcaga tgcaagattt catcagcatc
     1981 tttagtcaat tgtttcaaag ctgcattttt cattgttgct tgtttcgcca tgacacgctc
     2041 cccctctata taaattctca agtcttacta aaagtttatc ttactaaata ttaaaaagca
     2101 agtagattta aaatgtgtcg ttagcaattt gtgttaaaat aatgctatat acattgatag
     2161 ggagtgggaa aatgatacaa attaaaggag ccgtaaagtt tcctataaca ttagatagta
     2221 cgacttggat tttcgatgat agaaaagtta gcatcgaaga tttagaaaaa ggtgtatttg
     2281 atggttcaaa accaatcgac tttgaagata atcatgaatg gaatcgtgct atcctagaag
     2341 gacaaactaa tccgcctact ttaaattcag aaataaaata taaaaaacgt gccatgttag
     2401 aaggttcatt tgtcattaat atgacaccat ttttcaaaca ttccgaacca catgactctg
     2461 caactactat tcgattatca aatgagcatg atcatttaga tataccgata gatctattac
     2521 cctatttatt tttccaattt gcaaaagacg gtaaacgact ttacagcgat aatggtgtag
     2581 atagttttat ttacaatcaa gaagatggtt attcatatcg aatcaaccat gtaactcata
     2641 ttgaggtgat ttaatttgag acaagtgcaa tgcattatct gtgatgcaaa agtatttata
     2701 gatgagcgca caactgagtc taaacgactt aaaaacaatc ctattcgaac atttatgtgt
     2761 gatgattgta aaagtcgatt agacacacct aaacaacgtg cgcaacacta tccgctcgat
     2821 taatatctga ataaacaagt tagaaatttg aaaatgtgaa agtaacagga aataatagca
     2881 tttaaacact ttttcaaata ttatatgcca aaagagaagc taagcaactt tcatcgctca
     2941 gcttctcttt tattatgtta aattattcgt tttcttgcat catttgtttg atacgctttg
     3001 cttctttttc acgaacattt ttgtttaaaa ttttctttct taaacgtata ctttctggtg
     3061 taacctcaac aagttcatca tcattaatga attgtaacgc ttcttccaat gttagaatac
     3121 gcggtctatt cattgtttgt gtttggtctt tcgttgcaga acgtacgtta gtttgatgtt
     3181 ttgttttagt gatgttaaca gttaaatcat tttcacgatt atgttcacca acaatcatac
     3241 cttcataaac ttcagtacca ggttccatga agtttacacc tctatcttca agtcccaaaa
     3301 tggcataagt acttgcagaa ccttgatcca ttgaaattaa tgcaccatta cgacgaccgc
     3361 caatttgtgc tttaatacgt ggtctaaatt cttcaaatgt atggttaata ataccgtaac
     3421 ctcttgtcat tgacataaat tcagtcgtat aaccaatcat accacgagcc ggtacattaa
     3481 agattaaacg tgtaagtcca ttatcagttg tagtcatatc aaccatttca cctttacgtg
     3541 cacctaatga ttcaataaca gcacctgcat tttcttgtgg cacttcacat tgcacacgtt
     3601 caaatggttc acacattaca ccatctattt ctttaataat tacttgtggt tttgaaactt
     3661 gtaattcata accttcacga cgcatatttt caataaggat tgataaatgc aattcaccgc
     3721 gaccagcaac tacccatgta tctggagaat ctgtgttaga aactttcaaa gatacatctg
     3781 tttctaattg ttgatttaaa cgttcttgaa tttgacgtgc tgttacaaag tcaccttcac
     3841 ggccagcaaa tggagaattg ttaactttaa atgtcatttc aagagtaggc tcatcaatac
     3901 gtagaactgg caatgcttct tgatggtcat gtggtgttac agtttcacca acattaatgt
     3961 cttccatacc tgaaacagca attaaatctc cagcttgtgc ttcttcaatt tctaaacgtt
     4021 ttaatccaaa gtaaccaaag attttagtta cacggaagtt tttcactgta ccgtctaatt
     4081 taattagtga tacattatct ccgacacgca ttttacctct gaatacacga ccaataccaa
     4141 tacgtccaac ataatcattg tagtccaaca atgctacttg gaattgtaat ggctcatcac
     4201 tgttatcaat tggagctggt acataatcaa taattgtttc atataatgat tgtaaattat
     4261 catcttgctt ttcaggatct aagctagctg taccatttac tgctgaagca taaacaacag
     4321 ggaattctaa ttgttcatcg tttgcttcta attcaataaa taaatctaaa acttcatcta
     4381 caacaccctc tggacgtgct gatggtttat caattttatt aacaacaaca acaggtttca
     4441 ggttttgttc tagcgctttt ttaagtacaa aacgtgtttg aggcattgta ccttcatacg
     4501 catctactac taagacaacc ccatcaacca ttttcataat acgttctact tctccaccaa
     4561 agtctgcatg tcctggtgta tccaaaatat taatacgtgt acctttataa tcaacagccg
     4621 tatttttggc tagaatcgta attccacgct ctctttcgat atcgttagag tccattgcac
     4681 gttcatcgac atgttcattt tctctgaata taccagattg ttttaacaac tcatctacta
     4741 aagttgtttt accatggtca acgtgagcaa taattgctat attgcggaca tcttctcttt
     4801 tattagtcat ataaatagtt tccttctttc ttaagtaaaa tcccactttt aattacaact
     4861 tttttattat atcatataat tgagaaaaga taagcaaaag gtggggatag gatgaaacaa
     4921 aaaaaatcta aaaatatctt ttgggtattt tctatattag ctgttgtttt cttagtatta
     4981 tttagttttg ctgttggtgc atcaaatgta ccaatgatga ttttaacatt tatattactc
     5041 gttgcaacct ttggaattgg atttactaca aagaaaaaat atcgagaaaa cgattggcta
     5101 taagttatat cgacaataac acgcgttgat ttaagaccac acatgttcat gatgaacatt
     5161 taactggttt tatattggcg cgtgttttta ttatttaagg tataaaagcg taatatgtta
     5221 cctaattgtt aggactacat attacgcttt tggtaattat tttgattttc ttttaaatcg
     5281 ttgttcatgt aattgtatta acgcatcatg gtggggctct aaataatcat tgctaatttc
     5341 ttgatggaga ccacgatttc caactaagat tgaatttgga ccactaattg ttaatggttc
     5401 tcctagtaaa ttggaagctt gtccatttac ttcatataaa ataaccaatc cgccagcaaa
     5461 atcccatggt tgaagtcttg gcgtcatata tgcttctaaa ttacctgtag caactgaaac
     5521 gatttcaagc gctgcactac catatgccct tgcacttcta gaatcattaa caatttcttt
     5581 aaagatttct cctaaaattg gtttagttaa ccagttcgga ttgatcccaa taatgctttg
     5641 tcttagatta gaatcattca atggtttcaa gggttggcta ccacgatatg caccttcccc
     5701 tactttagca tgatataaga catcagccat aacatcatat acaaaacctg cataaggttt
     5761 accatcgata taaataccaa ttgaaattgc gaaattttct tgttgatgaa caaaattcaa
     5821 tgtaccgtct attgggtcaa caatccatac cgtacctttg gaagtatcga tgtcatgacc
     5881 atgcccttct tcacctaata cttgatgatt gggatatgtt tctaaaattg tatcaaaaat
     5941 gaaatcttct gttgctttat ctacatttgt aacaaggtca ttcggatttg actttgtttc
     6001 aattgttaaa ttttgctcca tcaattgttt aattctaatt cctgcttctt gaataagtcc
     6061 ttgggcaaat ccataaagtg ccataacatc atctcctaac atctttatta tacatcaaca
     6121 ttttataaaa ataacttctt atgataaaaa tgaaaatact aattttaatg agagcgtctt
     6181 aagccgcaat tgataaaaca tatgctacaa tatttttaaa cactatacag gaggtactct
     6241 atgacaaaat atacatttaa acctaaagat ttcaaagcgt tcaacgtaga aggcttagac
     6301 gcacgaatgg aagctttaaa cgaatacata cgaccacaac tccgtgaatt aggagaatat
     6361 tttagtgact tctttacaag tcaaactggt gaaacatttt atcctcacgt agcaaagcat
     6421 gctagaagaa gtgtgaatcc tcctaaagat acatgggttg cttttgcaac aaacaaaaga
     6481 ggctataaaa tgttacctca tttccaaatt ggtatgtttg aagatcaact gtttgttatg
     6541 tttggaatca tgcatgaagc aaaagataaa gcaacacgtg caaaagtttt tgaaagaaaa
     6601 tttaaagcta ttcaacaatt acctgatgat tatcgtgttt gcttagatca tatgaaacct
     6661 gataaaccat ttattaaaga tttaacggat gatgatttaa tagaagcgat acaaagagcc
     6721 atcaatgtga aaaaaggtga attctttata gcgcgtgcaa tcacaccaca agataaaaga
     6781 ttaaaaagtg acaaagcatt tattgcattt ttagaagaaa ccttcgatca gttcttacca
     6841 ttttattctg cataaataac tttgtttaaa taatagagca cttaatcaca tccatgattt
     6901 cgtgctcttt tttcttaata ttaaatcgaa cgttcaacat aataattcat acttttaaaa
     6961 aaattaaaat aaatttaggt tgacctaaac attttattag gttattatat tgtccataag
     7021 aagtagaggt gagtcaaaat gaataataaa cgacattcaa caaatgaaca attaagttta
     7081 gacgaaataa acaatacaat taaattcgat catcgcagtt caaataaaca gaaattttta
     7141 tcatttcttg gacctgggtt attagtcgct gttggttaca tggatcccgg aaactggata
     7201 acatcaatgc aaggtggcgc ccaatatggc tatactttgc tattcgtaat tcttatttca
     7261 agtttatcag caatgttact tcaaagcatg acagtgagat taggaatagc aacaggtatg
     7321 gacttagctc aaatgacacg acattattta tcaagaccta ttgctataat cttttggatc
     7381 attgcagaac tagcaattat cgctacagat attgctgagg ttattggtag tgctattgct
     7441 cttaatctcc tatttaacat acctttaatc gtcggtgcac taataactgt acttgatgta
     7501 tttttactac tttttataat gaaatatggt tttagaaaaa ttgaagctat tgttggtaca
     7561 ttaattttca cagtgttatt catctttata tttgaagtct atatttcatc accacagttg
     7621 aatgctgtgt taaatggatt tataccacat agtgaaatca ttacaaataa cggcattctc
     7681 tatattgcat taggtattat tggcgctaca attatgcctc ataatttgta cttacattca
     7741 tcaattgtac aatctagaac atactcaaga cataacaatg aagaaaaagc gcaagcgatt
     7801 aaatttgcta cgatagattc gaacattcag ttatcaatcg catttgtagt caattgctta
     7861 ttattagtgt taggagcatc actatttttc aactcaaatg ctgacgattt aggtggtttc
     7921 tatgatttat atcacgcctt aaaaactgaa cctgtactag gtgcaacaat gggtgcaatc
     7981 atgagtacat tatttgcagt tgcattatta gcgtcaggtc aaaattcaac gattactggt
     8041 actttagcag gacaaattgt aatggaagga tttttaagat tacacatacc aaattggtta
     8101 agacgtttaa ttacacgttc tcttgctgtc attcctgtta tcgtatgctt aatcattttt
     8161 aaaggtaatg cagctaaaat tgagcaacta cttgtattct ctcaagtatt tttaagtatt
     8221 gctctgccat tctgtttaat accattacaa ttggctacta gtaataaaga cttgatggga
     8281 cctttctata ataaaacatg ggttaatatc atttcatgga cacttattat tattctaagt
     8341 attttaaatg tctatttaat cgttcaaaca ttccaagaac tacaaagtta aaaataaaac
     8401 cattaaaatg ttggttgtat ctaataatta acaacttaac attttaatgg tttttctttt
     8461 gctatgaaca tattaatgat aaatatactc atcgtcctta tgtgttgttt cttttgattc
     8521 ttttttagaa atcaacataa tcatcacgat aacccataag acaattgcaa ttaaattaag
     8581 agccatcaaa cttacaatta tcgcgataac aaaaagtata atcgataatt ttctacgtcc
     8641 tttaatacaa attgtcgcaa atataccata aagtgttgaa attaataaaa taattgctaa
     8701 tgcacccatt gttgtctgaa gcatatctaa agaaaccttg ccaccgttct gagataattg
     8761 cttcgctaat tcttcacgtt gtgatgcatt accacttttt aaagaaaaat aggatagccc
     8821 cataactaat aaataaataa tactaatact atttgcaatc caagccatga ttaattcagg
     8881 ttttctattc atcttaaaat cctttctttg tttaatattt taataagtat actacgagcc
     8941 tatagatata cgcacattaa attacttgta tattaacata tttttcatct aatttttata
     9001 ataaacatct gaattcagat tgatgataat ttaggtgtat agtaatgaga aatcgtcatt
     9061 taaaattatg acacctaaac actttaatta aacgttatcg ataattaacc tcatataaaa
     9121 acccagatta ataagcaaaa gacctctgct tactaatctg ggtatcatca atatttattc
     9181 ttgctctttt ttgtccttaa cttcacttga attgcgttct tcagaaatat cattgttgta
     9241 aatttgacgt cgctcttcaa aattcattcg acgttgacta actgcgctag gttgattttt
     9301 cctacgttct ttcattcgtt ggttataagc tttacgtttt tcttttttct tagctttaat
     9361 ttcagctttt tctcgctttt gttgtgcttt caattctttt ggatcaactt caggttctgc
     9421 ataataacca tcatcttcaa tacctagttc ttcagtactt ttttgtttgt atttagcctg
     9481 tctggataat actgatggtt cttcctcagt gcgctcatca tgattatatt cactttcaac
     9541 tgcacgttta ggaaattgat catatttatc tctttcctgt tcttgatcat atacagtatt
     9601 tgatttatcc aattcttttt catatttagg cacatcataa taatcatctt tcggttgggg
     9661 gcgctcatac acaggttcac gataatcata aatcggtccg ttatactctt cataatattg
     9721 tggcgcaacc atttcaactt tatcttttct tataaatagc atcatcgcaa taataaagaa
     9781 taatatcgga atgattaaag taacgataag taaaactaaa ggaatcgtta caattgctga
     9841 tattaagaat aagaaacctg acaagattct tatattcata gatatgagag ctaaaaatga
     9901 aatcaacaaa caaacaataa agtaaacgat aatagcccat ataccatttt gtaaccatat
     9961 tacaaattgt gttgtattat agccatttcc agctaataat tgctggataa atgcattatt
    10021 gtttaatgta ttttcaagat tagcaatcga tgtgttatta ctgaatgaaa caagtgctat
    10081 aaacatcgta atgacagtaa gcactaataa catcacccaa cataaccaac ctagaacttt
    10141 ttcagttaat ctacttactg gacgtttaat ttgagtaaat tgttctccag tcattcgtta
    10201 caactcctta tagtacttat cccgttatta taactaaata tacagtaaat aactactatt
    10261 tatgatttta ttttaatgac attttgaaat tcaaaaagtt ttcattgtat tcacttaaaa
    10321 cttcaggtcc taaatcttta taaacttcaa ggcgttcttg ctctttctta gtcggataaa
    10381 aacgatggtc gtctttaatc tctttaggca acaattgtcg agcagccttg tttggcgttg
    10441 catagcctac gaattctgta ttttgcttgt tatttttagc atctaataaa aaattcataa
    10501 atttatatgc accctcttta ttttgtgccg tttttggaat taccatattg tcgaaccata
    10561 aattcgatcc ttctttagga ataacataat tatatttatc cccttcttgc actagaggtg
    10621 ctgcaacacc actccaaaca accgctatgt taccttcatt ttgttgaagc atcatggtaa
    10681 tttcatcacc tacgacacct cttacttgtg gtgctagttt ggttaaatct cgctctgctt
    10741 cttttaaatg gtgcgaatta cggtcattaa gattataccc aagtttattc aaactcatgc
    10801 ctataatctc tctagcaccg tcaactagta aaatttggtt tttaaattta ggattataca
    10861 atgacttcca actatcaaat gattcatttg gatacttttc tttattatat aaaataccta
    10921 cagttccaaa gaaataaggt aaagaatatt tattgcctct atcaaatgac atattcatat
    10981 aatctgaatc taaattttta atattaggta ccttattatg atctattggt aacaataaat
    11041 gatctctttt caatttttga actgtatatt cactaggaaa agcaacatca taatgtgtac
    11101 cgccattgcg aattttggct tccatcgctt catttgaatc gaaagtttca taaacgactt
    11161 gaatgccagt ttctttttca aatttcttaa ttaactctgg atcaatatat tcgccccaat
    11221 tgtatacgta aattttttga tttgtatgca cttgttcttt agatttaaac caatgactta
    11281 aagtaagaca aagcataccc acaactaatg cacctataat gagttgtaaa aatcgtttca
    11341 ttattttaca cctcgcttga ttagtttttt cttatttatc acgtattgaa tcaaataata
    11401 tcctagtatt cctaatacaa taacagcaaa caataatgtt gaaatcgcat taatttccat
    11461 actaattcct tttctcgcca tagcataaac ttcaactgat aacacactaa agccattacc
    11521 agtaacgaag aaacttactg tgaaatcgtc tagtgaataa gttaaagcca taaagaatcc
    11581 tcctataata gaaggtaaaa tattaggaat aataatgttg cttaataatt gtggttcagt
    11641 cgctcctaaa tctcttgcag catttaacat attattattc atttcataca gttgtggtaa
    11701 gacgataatc acaactatag gtatgcaaaa tgcaatatga gatattagaa ctgtccaaaa
    11761 tcctaaacca agaccagtaa aatggccaat cgttgtaaac ataattaaga atgatgcacc
    11821 tatgacaacg tcggatgata ccatcaagac attattcaat gttagtaaag ttactttaaa
    11881 ctttttattt cttaaataat aaatagcaat ggcaccaaat gtaccaataa ctgtagaaat
    11941 tgaggctgct aaaagtgcta cagctatcgt attaaaaatg accgacatta aatgatcatt
    12001 ttgaaataat gattgataat gctctaatgt aaaatgttca aagtgaatca tattaccagc
    12061 cgaattgaat gaatagaaca ttaaaaagaa tattgggatg tataaaatcg ctaaaagtat
    12121 cccgatatac agctttccat accatttcat atgattcacc ctctcccatt agatgatttt
    12181 gtaatgatta aaatgaatgc cataaataca attaagaata tagctatagt tgatcccata
    12241 ccataatttt gaattgttaa aaattgttcc tctattgccg tacctatatt tatgacttta
    12301 ttacctgcaa ttaatcttgt aatcataaat aatgaaagtg atggaataaa ggttacttga
    12361 atcccagtca taacaccttc ttttgttaac ggcatgatta cttttctaaa agtatagaaa
    12421 ggactggcac ctaaatcact tgaggcctgc aataaattat taggaattgc tttcatgcta
    12481 ttaaatatag gtaaaatcat aaatggtata taaatgtaac ttgccactac taaaaacgca
    12541 ccagttgtaa ataacaaatt gaatgatggt aaattaaata agtggaaaaa ttgattaatc
    12601 acgccatcat gacttaataa acctataaaa gcatatgtct ttaacaataa atttatccat
    12661 gttggaataa tcattatcat taataagata t
//
LOCUS       DAMQWL010000073        12620 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.073, whole genome shotgun sequence.
ACCESSION   DAMQWL010000073 DAMQWL010000000
VERSION     DAMQWL010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 12620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12620
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.073"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            149..808
                     /gene="arlR"
                     /locus_tag="PF788_001823"
     CDS             149..808
                     /gene="arlR"
                     /locus_tag="PF788_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor ArlR"
                     /protein_id="HDG6304082.1"
                     /translation="MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSH
                     YYDLIILDLMLPSINGLEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKP
                     FDIEELLARIRAILRRQPQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLA
                     ENKNHVMQREQILNHVWGYNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI
                     R"
     gene            805..2160
                     /gene="arlS"
                     /locus_tag="PF788_001824"
     CDS             805..2160
                     /gene="arlS"
                     /locus_tag="PF788_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase ArlS"
                     /protein_id="HDG6304083.1"
                     /translation="MTKRKLRNNWIIVTTMITFVTIFLFCLIIIFFLKDTLHNSELDD
                     AERSSSDINNLFHSKPVKDISALDLNASLGNFQEIIIYDEHNNKLFETSNDNTVRVEP
                     GYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYIIALA
                     FGVIATIITATISYVFSTQITKPLVSLSNKMIEIRRDGFQNKLQLNTNYEEIDNLANT
                     FNEMMSQIEESFNQQRQFVEDASHELRTPLQIIQGHLNLIQRWGKKDPAVLEESLNIS
                     IEEMNRIIKLVEELLELTKGDVNDISSEAQTVHINDEIRSRIHSLKQLHPDYQFDTDL
                     TSKNLEIKMKPHQFEQLFLIFIDNAIKYDVKNKKIKVKTRLKNKQKIIEITDHGIGIP
                     EEDQDFIFDRFYRVDKSRSRSQGGNGLGLSIAQKIIQLNGGSIKIKSEINKGTTFKII
                     F"
     gene            2444..5242
                     /locus_tag="PF788_001825"
     CDS             2444..5242
                     /locus_tag="PF788_001825"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDG6304084.1"
                     /translation="MTNERKEVSEAPVNFGANLGLMLDLYDDFLQDPSSVPEDLQVLF
                     STIKNDDSIVPALKSTSSQNSDGTIKRVMRLIDNIRQYGHLKADIYPVNPPKRKHVPK
                     LEIEDFDLDQQTLEGISAGIVSDHFADIYDNAYEAILRMEKRYKGPIAFEYTHINNNT
                     ERGWLKRRIETPYKVTLNNNEKRALFKQLAYVEGFEKYLHKNFVGAKRFSIEGVDALV
                     PMLQRTITIAAKEGIKNIQIGMAHRGRLNVLTHVLEKPYEMMISEFMHTDPMKFLPED
                     GSLQLTAGWTGDVKYHLGGIKTTDSYGTMQRIALANNPSHLEIVAPVVEGRTRAAQDD
                     TQRAGSPTTDHHKAMPIIIHGDAAYPGQGINFETMNLGNLKGYSTGGSLHIITNNRIG
                     FTTEPIDARSTTYSTDVAKGYDVPIFHVNADDVEATIEAIDIAMEFRKEFHKDVVIDL
                     VGYRRFGHNEMDEPSITNPVPYQNIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQ
                     KELRQAHDKINKADKMDNPDMEKPADLALPLQADEQSFTFDHLKEINDALLTYPDGFN
                     ILKKLNKVLEKRHEPFNKEDGLVDWAQAEQLAFATILQDGTPIRLTGQDSERGTFSHR
                     HAVLHDEQTGETYTPLHHVPDQKATFDIHNSPLSEAAVVGFEYGYNVENKKSFNIWEA
                     QYGDFANMSQMIFDNFLFSSRSKWGERSGLTLFLPHAYEGQGPEHSSARLERFLQLAA
                     ENNCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTSG
                     GFEPILTESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIE
                     ALLAQLPNLEEVSWVQEEPKNQGAWLYVYPYVKVLVADKYDLSYHGRIQRAAPAEGDG
                     EIHKLVQNKIIENALKNN"
     gene            5256..6524
                     /gene="sucB"
                     /locus_tag="PF788_001826"
     CDS             5256..6524
                     /gene="sucB"
                     /locus_tag="PF788_001826"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDG6304085.1"
                     /translation="MPEVKVPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVN
                     VEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGEGSGNASKENSNDNTPQQNEETNNKK
                     EETTNNSVDKAEVNQANDDNQQRINATPSARRYARENGVNLAEVSPKTNDVVRKEDID
                     KKQQAPASTQTTQQASAKEEKKYNQYPTKPVIREKMSRRKKTAAKKLLEVSNNTAMLT
                     TFNEVDMTNVMELRKRKKEQFMKDHDGTKLGFMSFFTKASVAALKKYPEVNAEIDGDD
                     MITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVN
                     GSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYD
                     HRIIDGKEAVGFLKTIKELIENPEDLLLES"
     gene            7104..7913
                     /locus_tag="PF788_001827"
     CDS             7104..7913
                     /locus_tag="PF788_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDG6304086.1"
                     /translation="MCGLRSITLGTTNIEQTKHFMVDILGLNYEELLENSIRFGDADI
                     SPGTRLQFIQVPSEQLEESHFVGIGLRTPTDSGLEEYAEILSNKDIPFTTVKELNGNK
                     YFSLEDNNGHIFSIYSNENNYGVGLGMPSFESAVNPLHQVQGLGPVILKVNHVDITGQ
                     ILTNIFGLEVFAEYQPFDNADYHVQVFKVGTGGLGGEIHLMPVETEMTMPEYGAVDQV
                     EFETKDADFFNQAKSRLDEVEIPYQTLEQDDIESIRITENSGLSFIFTLQK"
     gene            7942..8145
                     /locus_tag="PF788_001828"
     CDS             7942..8145
                     /locus_tag="PF788_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499941.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304087.1"
                     /translation="MLHETWKERTPIKKVEVINTDAKKFTVSDMLTVGKQYDVINETE
                     EYYQIIDNSGLVGGYYKTYFKEV"
     gene            8326..9117
                     /locus_tag="PF788_001829"
     CDS             8326..9117
                     /locus_tag="PF788_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HDG6304088.1"
                     /translation="MALKHYKNSDSTVFNDAKALFDLNKNILLKGPTGSGKTKLAETL
                     SEVVDTPMHQVNCSVDLDTESLLGFKTIKTNAEGQQEIVFVDGPVIKAMKEGHILYID
                     EINMAKPETLPVLNGVLDYRRQITNPYTGEVIKAVPGFNVIAAINEGYVGTLPMNEAL
                     KNRFVVIHVDYIDGDILKNVIKEQSLLQGDKQIEQIIKFNEDLRTMSKQGQISEEAAS
                     IRALLDLCDLITVMPVERAIKRTIIDKLEDEREQQAIYNAVELNF"
     gene            9131..11017
                     /locus_tag="PF788_001830"
     CDS             9131..11017
                     /locus_tag="PF788_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase activation protein NorD"
                     /protein_id="HDG6304089.1"
                     /translation="MSDRFIKFNDEQLDAKQVMMLQDLARLLLKNEQTQVKIQKFPYY
                     NPVQNVLITSWFWSHRPSHIEMAGLKTDVMLAAYGYHMMDVQIVNEVVQDKTFKHPKF
                     YQQLFKLLEDMRVLNSIKVERPSTAKLIDLRLDTRISYTESQIKVYRTKTQYTDLLFL
                     YLEHAFLSQDFFDIPSIHSDLDDILVNMFLYLPNFFQNQNSEDNMYLAQRIMYQVDDI
                     LKEDMLNEYYYLPKTLYNTLASPEFDDLKRTDASQVDGQDDTSEDDDNESEKADSKSA
                     DSESKGGAYLEMELHEGQNSETLGNDEAREGDATDDMTDMMTKKGKGSNDTLNREEGD
                     AVGQSQAFQLDGVNKNVEIKWQIPEIEPQYVLEYQESKQDVQYEIKDLIQIIKKTIER
                     EQRDARFNLTKGRLQKDLINWFIDDQYKLFYKKQDLSKSFDATFTLLIDASASMHDKM
                     AETKKGVVLFHETLKALNIKHEILSFSEDAFDSDEHAQPNIINEIINYDYSTFEKDGP
                     RIMALEPQDDNRDGVAIRVASERLMRRNQHQRFLIVFSDGEPSAFNYSQDGIIDTYEA
                     VEMSRKFGIEVFNVFLSQDPITEDVEQTIHNIYGQYAIFVEGVAHLPGHLSPLLKKLL
                     LKSL"
     gene            11242..12585
                     /gene="brnQ"
                     /locus_tag="PF788_001831"
     CDS             11242..12585
                     /gene="brnQ"
                     /locus_tag="PF788_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDG6304090.1"
                     /translation="MNKNTWVIGFTLFAMFFGAGNLIFPPNLGLDSGQFFWPAILAFV
                     LTGIGLPLLGVIVGALDKEGYIGALNKISPKFSILFLIIIYLTIGPLFAIPRTASTSF
                     EMTITPIIHSNSSIALFIFTIIYFIVVLYICLNPSKLIDRIGSLLTPLLLITILAMII
                     KGYLDFSGNSAGKGNEALYHSNFSSFAEGFTQGYLTMDAIAAIAFSMIVVNAVKLTGI
                     TKTNQIFKQTLTAGLIAAVALIFIYISLGYIGNHMPVSDMTLDQLKSKDRNIGTYLLT
                     TMASTGFGSFGKYLLGIIVALACLTTACGLIVAVSEYFHRIVPKVSYKAFVLVFILMS
                     FIIANQGLNAVISMSIPVLSIVYPVAITVVLLILIAKFIPTKRISQQIPVIIVFILSI
                     FSVISKLGWLKINFIESLPLRAYSLEWFPVAIIATILGYLVGIFVKQDPIKYQQE"
BASE COUNT         4670 a         1809 c         2245 g         3896 t
ORIGIN      
        1 gtagcttgaa aaatttaaaa catggttatt gatttgtgat aaaatttaaa cgtaaacaaa
       61 ctaatttaaa aagcaactat tgtatagaaa aatacaaaat ttaaaatata ttaccttatt
      121 agaaaaagtc gtaatatgag gtgtacaaat gacgcaaatt ttaatagtag aagatgaaca
      181 aaacttagca agatttcttg aattggaact cacacatgaa aattacaatg tggacacaga
      241 gtatgatgga caagacggtt tagataaagc gcttagccat tactatgatt taatcatatt
      301 agatttaatg ttgccgtcaa ttaatggctt agaaatttgt cgcaaaatta gacaacaaca
      361 atctacacct atcattataa ttacagcgaa aagtgatacg tatgacaaag ttgctgggct
      421 tgattacggt gcagacgatt atatagttaa gccgtttgat attgaagaac ttttagcaag
      481 aattcgtgca attttacgtc gtcagccaca aaaggatatt atcgatgtca acggtattac
      541 aattgataag aacgctttta aagtgacggt aaatggcgca gaaattgaat taacaaaaac
      601 agagtatgat ttactatatc ttctagctga aaataaaaac catgttatgc aacgggaaca
      661 aattttaaat catgtatggg gttataatag tgaagtagaa acaaatgtcg tagatgttta
      721 tataagatat ttacgaaaca agttaaaacc atacgatcgt gacaaaatga ttgaaacagt
      781 tcgtggcgtt gggtatgtga tacgatgaca aaacgtaaat tgcgcaataa ctggattatt
      841 gttaccacga tgattacgtt tgtcacgata tttttgtttt gtttaattat tatttttttc
      901 ttgaaagata cactgcataa tagtgagctt gatgatgcag aacgaagctc aagcgatatt
      961 aataatttat ttcattctaa gcctgttaaa gatatatctg cattagactt gaatgcatct
     1021 ttaggtaatt ttcaagagat aattatttat gatgagcata ataataaatt atttgagaca
     1081 tcgaatgata acacagtgag agttgaacca ggttatgaac accgttattt tgaccgcgta
     1141 ataaaaaaac gctataaagg cattgaatat ttaattatta aagaaccaat tacaacgcaa
     1201 gatttcaaag ggtatagctt gttaattcat tcactagaaa attatgataa catcgtaaaa
     1261 tcattgtata tcattgcgct ggcatttgga gtgattgcaa caattataac tgccacaatc
     1321 agttatgtat tttcaacaca aattactaaa ccgcttgtca gtttatcaaa taaaatgatt
     1381 gagattcgac gagatggttt tcaaaataaa ttgcaattaa atacaaatta tgaagaaata
     1441 gataatttag caaatacgtt taatgagatg atgagccaaa ttgaagaatc atttaatcaa
     1501 caaagacaat ttgttgaaga tgcgtcacat gaattacgaa caccattaca aattattcaa
     1561 ggtcatttaa atttgattca gcgatgggga aaaaaagacc cagcagtatt agaagaatcg
     1621 ttaaatattt ctattgaaga aatgaatcgt atcataaaat tagtcgaaga attacttgaa
     1681 ttgactaaag gagatgtaaa tgacatttct tctgaagcac agaccgtgca tattaatgat
     1741 gaaattcgct cgcgaataca ctcattaaaa caattgcatc ctgattatca atttgatacg
     1801 gatctgacat ctaaaaatct agaaattaaa atgaaacctc atcaattcga acaattattt
     1861 ttaatcttta ttgataatgc aatcaaatat gatgtgaaga ataagaaaat taaagttaag
     1921 acaaggttaa aaaataagca aaaaataatt gaaattacag atcatggaat tggtattcca
     1981 gaggaagatc aagatttcat ttttgatcgc ttttatcgag tggataaatc tcgttcaaga
     2041 agtcaaggcg gtaatggact cggattatct attgctcaaa aaatcattca attaaacgga
     2101 ggatcgatta aaattaaaag tgaaattaac aaaggaacaa cgtttaaaat catattttaa
     2161 tcatgactga gacgtcaatc aaagtcatag gatcaatttt ttaagtacac attagctgtg
     2221 actaatgtat aagaacaact ataaaacaaa taaacagtgg ttctttatca tttctgttgt
     2281 actcccaaaa tttacaataa aatacatcta taaacctaga agaatcaacg cttttgttga
     2341 ttcttctttt tagcagataa ataggtaaat ctactttaac aaataactaa atagtgatat
     2401 tattacattg taagcgtttc aacatttttg tggagggtgt aaaatgacta acgaaagaaa
     2461 agaagtttca gaggctcctg taaacttcgg tgcgaattta ggtctaatgt tagatctata
     2521 tgatgacttt ttacaagatc catcatctgt accagaagat ttacaagtct tattcagcac
     2581 aattaagaat gatgactcaa ttgtaccagc tttaaaaagt acaagtagtc aaaatagcga
     2641 cggcacaatt aagcgtgtca tgcgtttaat tgataatatt cgccaatacg ggcatcttaa
     2701 agccgatatt tatcctgtaa atcctccaaa aaggaaacat gtacctaaat tagagattga
     2761 agactttgat ttagatcaac agactttgga aggtatatca gcaggaattg tttcagatca
     2821 ctttgccgac atttatgata atgcttatga agcaatttta agaatggaaa aacgttacaa
     2881 aggaccaatt gcatttgagt atacacatat taataacaat accgaacgtg gttggttaaa
     2941 aagaagaatt gaaacgccat ataaagtaac gttaaataat aacgaaaaaa gggcactatt
     3001 caaacaatta gcgtatgttg aagggtttga aaaatatctt cataaaaact tcgttggtgc
     3061 aaagcgtttt tcaattgaag gggtagacgc acttgtaccg atgttacaac gtactattac
     3121 gattgctgcg aaagaaggta ttaaaaatat acaaataggc atggctcacc gtggacgttt
     3181 aaacgtttta acgcatgtct tagaaaaacc gtacgaaatg atgatttcag aatttatgca
     3241 tacagatcca atgaaattct tacctgaaga tggtagcttg cagttaactg ctggatggac
     3301 tggtgatgtg aaatatcacc ttggtggcat taaaactact gattcatacg gtacaatgca
     3361 gcgtattgca ctggctaaca atccaagtca cttggaaatt gttgcacctg ttgttgaggg
     3421 gcgtacgaga gcagcacaag atgatacaca acgagctggg tctccgacga ctgatcatca
     3481 taaagcaatg ccaattatta tacatggcga tgctgcttat cctggtcaag gaattaactt
     3541 cgaaacaatg aacttaggaa acttgaaagg ctattctacg ggtggttcat tgcatattat
     3601 tactaacaat agaattggat ttactacaga accaattgat gcacgttcaa caacttattc
     3661 tacagatgtg gccaaaggtt atgatgtgcc aatattccat gtcaatgcag atgacgttga
     3721 agctactatt gaagcaattg atattgcaat ggaatttaga aaagagtttc ataaagacgt
     3781 cgttattgat ttagtaggtt atcgtcgttt cggacataac gaaatggatg aaccatcaat
     3841 tactaatcca gttccttatc agaatattcg caaacatgac tctgttgaat atgtgtttgg
     3901 taaaaagctt gttaatgaag gtgtcatttc agaagatgaa atgcattcat ttatagaaca
     3961 agtccaaaag gaactaagac aagctcatga taaaattaat aaagctgata aaatggataa
     4021 tccagatatg gaaaagcctg cagatcttgc attaccgtta caagcagacg aacaatcatt
     4081 tacttttgat cacttgaaag aaataaatga tgcattgtta acatatccgg atggctttaa
     4141 cattttgaaa aagttaaaca aagttcttga gaagcgtcat gagccgttta ataaagaaga
     4201 tggtttagtt gattgggcac aagcagaaca acttgcattt gcgacaattt tacaagatgg
     4261 tacaccgatt cgcttaactg gtcaagatag tgaacgtggt acattcagtc ataggcatgc
     4321 cgtgttacat gatgagcaaa caggtgaaac atatacacct ttacatcatg ttcctgatca
     4381 aaaagcgaca tttgatatac acaattctcc gctttcagaa gcagcagtag ttggttttga
     4441 atacggctat aatgtggaaa acaaaaaaag cttcaatatt tgggaagcac aatatggtga
     4501 ttttgcaaat atgtcacaaa tgatttttga caacttctta ttcagttctc gctcaaaatg
     4561 gggagaacgt tcaggattaa cattattctt acctcatgca tatgagggtc aagggcctga
     4621 acattcatca gcaagattag agcgattttt acaattagct gctgaaaata attgcacagt
     4681 tgtcaactta tctagttcaa gtaattattt ccacttattg cgtgcacaag cggctagttt
     4741 agattctgaa caaatgcgac cattggttgt tatgtcacca aaaagcttac tgagaaataa
     4801 aacagttgca aaaccaattg atgaatttac ttctggtgga tttgagccaa ttttgacaga
     4861 atcatatcaa gcggataagg ttacaaaagt tattttggca actggtaaaa tgttcattga
     4921 tttaaaagaa gcattagcta aaaatccaga cgaatcagta ttactcgttg cgattgaaag
     4981 attgtatcca ttcccagagg aagagattga agcattacta gcacaattgc caaaccttga
     5041 agaagtgtca tgggtacaag aagaacctaa aaatcaaggt gcatggttat atgtctatcc
     5101 atatgttaaa gtgctagttg cagataaata tgatttaagt tatcatggca gaattcaaag
     5161 ggctgctcca gctgaaggcg atggagaaat tcataaactt gttcaaaata aaattataga
     5221 aaatgcatta aaaaataact agggggaaat aagtcatgcc agaggttaaa gttccagaat
     5281 tagcagaatc tattacagaa ggtaccattg cagaatggtt gaaaaacgta ggggatagcg
     5341 tagaaaaagg tgaagctatt cttgaattag aaactgataa agttaatgtc gaagttgtat
     5401 ctgaagaagc aggtgtatta tctgaacaac ttgcaagtga aggcgacact gtagaagttg
     5461 gacaagcaat tgctatcatc ggcgaaggta gtggcaatgc ttctaaagaa aatagtaacg
     5521 acaatactcc acaacaaaat gaagaaacaa ataataaaaa agaagaaaca acaaataatt
     5581 cggtagataa agctgaagta aatcaagcaa atgatgacaa tcagcaacgt attaatgcta
     5641 cgccttctgc gcgtcgatat gctcgtgaaa atggtgtgaa tcttgctgaa gtaagtccga
     5701 aaacaaatga tgtggttcgt aaagaagata ttgataagaa acaacaggca ccggcatcaa
     5761 cacaaacaac acaacaagca tctgcaaaag aagagaaaaa atacaatcaa tatcctacaa
     5821 aaccagtgat tcgtgaaaaa atgtcacgta gaaagaaaac agctgccaaa aaattattag
     5881 aggtatctaa taatacagct atgttaacaa catttaacga agttgacatg acaaatgtta
     5941 tggaattgcg taaacgtaag aaagaacaat ttatgaaaga tcatgatggt actaaattag
     6001 gatttatgtc attctttact aaagcttctg tagcagcttt gaaaaagtat ccagaagtta
     6061 atgcagaaat cgacggcgac gacatgatta cgaaacaata ttatgatatt ggtgtagctg
     6121 tttctacaga tgatggatta ttagtaccat ttgtaagaga ttgtgataaa aagaattttg
     6181 cagaaatcga agcagaaatt gctaatttag cagttaaagc acgagagaaa aaacttggct
     6241 tagatgatat ggttaatggt tcatttacga ttacaaatgg cggtattttt ggatcaatga
     6301 tgagtacgcc aattatcaat ggtaatcaag ctgcaatctt aggcatgcat tcaattatta
     6361 caagaccaat tgcgattgat caagatacaa tcgaaaatcg tccaatgatg tatattgcat
     6421 taagctatga tcatagaatt attgacggta aagaagcagt tggattctta aaaacaatta
     6481 aagaattaat tgaaaaccca gaagacttat tattagaatc ttaatccaca acacaaaata
     6541 gtttactatt cctaaaagcg ggattaaatc aataacaaac agcagtaaga ttatttccta
     6601 gtcgaaatat cttactgctg tactttattt ttataatgat tcgtattaaa atgtgggttt
     6661 aattttgact acttaaaaaa tatatcattt ctattgaaat agactcacaa tagaaatata
     6721 ggtagaatag cgtgtttcaa tatgctaatg aatgcatttt agataataac aaacgatgaa
     6781 atatatgaat tctataagcg cctttagtta atttaaaatc atctgaacat gatgtaaatt
     6841 cgctttatgg acacgacata tatatgtttt tcatgtccta caaaaaacga aatattcaat
     6901 tgctatatac agatattcat taatgacaca ctcaatagca accataacaa tattatgtta
     6961 cctatttaaa tgaaatagtt cttttaaaga aatacatttt tcacatatta atctataatc
     7021 aaaatcaact gaccgatatt ctataattta tgattaaaat aagttataat ataatagtaa
     7081 agataaagat agaggtggct ataatgtgtg gacttagaag tataacatta ggtacaacaa
     7141 atatagaaca gacaaaacat ttcatggttg acatattagg attaaattat gaagaacttc
     7201 ttgaaaactc aattcgtttc ggcgatgcag atataagccc aggaacaaga cttcaattta
     7261 tacaagttcc aagtgagcaa ttagaagaat ctcactttgt gggtattgga ttacgtacac
     7321 caactgactc aggtttagag gagtatgcgg aaatattatc gaataaggat attccattta
     7381 caacagttaa agaattaaat ggcaataaat atttcagtct cgaagataac aatggtcata
     7441 ttttctcaat atattcaaac gagaataatt atggcgttgg tttaggtatg ccttcttttg
     7501 agagtgcggt caatccgtta catcaagtgc aaggtttagg accagtgatt cttaaagtga
     7561 atcatgtaga tattacaggt caaattttaa caaatatatt cggacttgaa gtatttgcag
     7621 aataccaacc cttcgacaat gctgactatc atgtccaagt attcaaagtt ggaacgggtg
     7681 gtctaggtgg cgaaatacat ttaatgcctg tagaaaccga aatgacaatg ccggaatatg
     7741 gcgcagtcga tcaagttgag tttgaaacga aagatgcaga tttctttaat caagcgaaat
     7801 cgcgcttaga tgaagtggaa ataccatatc aaacgcttga gcaagatgat attgaatcaa
     7861 ttagaattac tgaaaacagt ggattatcgt ttatattcac tttacaaaaa taattttttt
     7921 acgatagcga ggacaaaatt tatgttacat gaaacttgga aagaacgtac accaatcaag
     7981 aaagtagaag tcattaatac agatgcaaag aaatttacag tttctgacat gttaacggtt
     8041 ggcaaacaat atgatgttat caacgaaact gaagaatatt atcaaataat agataattct
     8101 ggattagttg gcggttacta taaaacatat ttcaaagaag tttaaacgca taattattga
     8161 aatgaagcct aatatgagat tttcaattag taaatttggt aaaatataaa caattcgcat
     8221 actaagcatt gcgttttata tcagaataga atagtaaact aaggcatttg gagaacttat
     8281 tccatgtctt agttttttaa tttatttaaa ggagaacgtt ttaaaatggc actaaaacat
     8341 tataagaatt cagattcaac agttttcaat gatgcgaagg cattatttga tttaaataaa
     8401 aatattttac ttaaaggtcc aacaggttca gggaaaacaa agttggcaga aacattaagt
     8461 gaagttgttg atacacccat gcatcaagtc aattgttctg ttgatttaga tacagaaagc
     8521 ttattaggct ttaaaacaat taaaacaaat gcggaaggtc aacaagaaat tgtctttgta
     8581 gatggtccag ttattaaagc tatgaaagag gggcatattt tatatattga tgaaataaat
     8641 atggctaaac ctgaaacatt gcctgtatta aatggggtct tagattatcg tcgtcaaatt
     8701 acgaatccat acactggtga agtaatcaaa gctgtaccag gatttaacgt tatagcagcg
     8761 ataaatgaag gttatgttgg tactttgcca atgaatgaag cactaaaaaa tcgctttgtt
     8821 gttattcacg ttgattatat tgatggggac attttaaaaa atgtgattaa agagcaaagt
     8881 ttattacaag gtgataaaca aatcgaacaa attattaagt ttaatgaaga tttacgtact
     8941 atgtctaagc agggacaaat ttctgaagaa gccgctagta tccgtgcatt attagacttg
     9001 tgtgatttaa tcactgtaat gccagttgaa cgtgcaatta aacgtacaat tattgataaa
     9061 ttggaagatg aacgtgaaca acaagcaata tataatgctg tagaactaaa cttttaaaga
     9121 gggataaaac atgagtgatc gtttcataaa atttaatgac gaacagttag atgccaagca
     9181 agtaatgatg ttgcaagact tagctcgact cttattaaaa aatgaacaaa cacaagttaa
     9241 aatccaaaaa ttcccttact ataatcctgt tcaaaatgtt ttgattacga gttggttttg
     9301 gtcacatcga ccaagccata tcgaaatggc tggtttaaaa acagatgtta tgttagctgc
     9361 ttacggttat catatgatgg atgtacaaat tgtaaatgaa gtagtacaag ataaaacttt
     9421 taaacaccct aaattttatc aacaactttt taaattatta gaagatatgc gcgtattaaa
     9481 ttctattaaa gttgagcgcc caagtactgc taaattaatt gatcttcgct tagatacacg
     9541 tatatcatat acggaatctc aaattaaagt gtatcgtact aaaacacaat atacagattt
     9601 attatttttg tatttagaac atgcattttt aagccaagat ttctttgata taccatctat
     9661 acattcagat ttagatgata ttttagtaaa tatgttctta tatttaccta attttttcca
     9721 aaatcaaaat tctgaagata atatgtatct ggctcaaaga attatgtatc aagtagatga
     9781 tattttaaaa gaagatatgc taaacgaata ttattactta cctaaaacac tatataatac
     9841 attagctagt ccagagtttg atgatttaaa gagaactgat gcaagtcaag tcgatgggca
     9901 agatgatact tcagaagatg atgataacga aagtgaaaaa gctgactcta aatctgcaga
     9961 tagtgagtca aaaggtggcg cctatttaga aatggagctt cacgaaggac aaaatagtga
    10021 aacattaggt aatgatgaag cacgtgaagg cgatgctaca gatgatatga ctgatatgat
    10081 gaccaaaaag ggcaaaggat caaacgatac gctaaatcgt gaagaaggcg atgctgttgg
    10141 tcaaagccaa gcatttcaac ttgatggtgt gaacaaaaat gtagaaataa aatggcaaat
    10201 tcctgaaatt gagccacaat atgttttaga atatcaagaa tcgaaacaag acgtacaata
    10261 tgaaatcaaa gacttaattc aaattataaa gaaaacgatt gaacgagaac aacgagatgc
    10321 acgttttaat ttaacaaaag ggcgattaca aaaggattta attaattggt ttatcgacga
    10381 tcaatataaa ttgttttaca aaaaacaaga tttaagtaaa tcatttgatg cgacatttac
    10441 attgttaatt gatgcgtcag caagtatgca tgataaaatg gctgaaacga agaaaggtgt
    10501 agtgttattc cacgagacgt taaaagcatt gaacattaaa catgaaattt tatcattcag
    10561 tgaggatgcc tttgattcag acgagcatgc acaaccaaat atcattaatg aaattattaa
    10621 ctatgattac tcaacctttg aaaaagatgg cccacgtatt atggcacttg aacctcaaga
    10681 tgataatcgt gatggtgttg ctattagagt tgcaagtgaa cgattaatgc gtcgaaatca
    10741 acatcaacga tttttaatcg tattttcaga cggcgaaccg tctgcattta attatagtca
    10801 agatggtatt attgatacgt atgaagctgt agaaatgtca cgtaaatttg gtattgaagt
    10861 atttaatgta tttttgagtc aagatccaat aactgaagat gttgaacaaa caattcataa
    10921 tatttatggt caatatgcta ttttcgttga aggtgttgcg catttacctg gacatctctc
    10981 tccattatta aaaaaattac tacttaaatc tttataaata aatttaaaat atgagtttat
    11041 atgaaattgt gaataaaagt catcagttac tatttaaaaa gtggatttga agaattttat
    11101 tttctgacat aatttgattt aaacaacaca tgtgttttgt ttctgctatg tacaacatat
    11161 ttcatataga ctctttatta ttttttgtgc taaaatattt acttgtaaat tatttcgtgt
    11221 tttaaaaaaa ggagtaactc tatgaataaa aatacatggg tcattgggtt tacgctcttc
    11281 gctatgtttt ttggcgcagg caatctaatt tttcctccta atctcggatt ggatagtggt
    11341 caatttttct ggcccgccat tttagcgttt gttctaactg ggattggttt accattatta
    11401 ggtgtgattg taggtgcact tgataaagaa ggatatattg gcgcattaaa taaaatttca
    11461 cctaaatttt caatattgtt cttaatcatc atttatttga ctataggacc actttttgca
    11521 atacctagaa ctgcatctac atcttttgaa atgacaatta caccaattat acatagcaat
    11581 agtagtatcg ctttatttat atttacgatt atctacttca tagtcgtttt gtatatttgt
    11641 ttaaatccat ctaagttaat cgatcgtatt ggttcattat taacaccatt attattgatt
    11701 actattttag cgatgattat taaaggatac ttagacttta gcggtaatag tgctggaaag
    11761 ggcaatgaag cactatatca ttctaatttt tcaagttttg ctgaaggctt tacacaaggc
    11821 tatttaacaa tggatgccat tgcagcaatt gctttttcaa tgattgttgt taatgcagta
    11881 aaactaacag gcattactaa aacaaatcaa atattcaaac aaactttgac tgctggttta
    11941 attgcagccg tagctttaat tttcatatat atttcattag gttatattgg taatcatatg
    12001 ccagtaagtg acatgacgtt agatcaattg aaatccaaag atcgaaacat tgggacatat
    12061 ttattaacga caatggcttc aacaggattt ggttcattcg gaaaatattt attgggcatc
    12121 attgtggcgc tggcatgtct aactacagca tgcgggctta ttgttgcagt ttctgaatat
    12181 ttccatagaa tcgtacctaa agtatcatac aaagcatttg tattagtttt cattttaatg
    12241 agttttatta ttgctaacca aggtttaaat gctgttatct caatgtcaat tccggtatta
    12301 agcattgtat acccagtagc aataactgtt gtattattaa ttttaattgc caaattcata
    12361 ccgacaaaac gcatttcaca acaaattcca gttattatcg tatttatatt gtcgattttc
    12421 agtgttatta gtaagttagg ttggctgaaa attaacttta tagaatcatt gcctctaaga
    12481 gcgtattctt tagagtggtt cccagtagca attattgcaa cgatattagg ctatctagtc
    12541 ggcatatttg taaaacaaga tccaattaaa tatcaacagg aataacgaat aatataaaag
    12601 aggttgggac ataaatccct
//
LOCUS       DAMQWL010000074        12310 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.074, whole genome shotgun sequence.
ACCESSION   DAMQWL010000074 DAMQWL010000000
VERSION     DAMQWL010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 12310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12310
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.074"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            218..1036
                     /locus_tag="PF788_001832"
     CDS             218..1036
                     /locus_tag="PF788_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HDG6304091.1"
                     /translation="MNNSEQLIALKESETAFLKYFNKADYELVDFSVVEKLDWKQLNH
                     EDLQQMGERNFWQHEHQIYALRNDFTDQLLRYYSMYPTAATKVAYTGLIIRNNEAAVQ
                     VGLENYAPSLANVQQSLKLFIQFIQQQLRDNVHFVVLGHYQLLDALLDKSLQTPDILS
                     MIEERNLSGLVTYLSTEHPIVQILKENTQQQLNVLEHYIPNDHPALVELKIWERWLHK
                     QGYKDIHLDITAQPPRSYYTGLFIQCHFAENESRVLTGGYYKGSIEGFGLGLTL"
     gene            1054..1668
                     /locus_tag="PF788_001833"
     CDS             1054..1668
                     /locus_tag="PF788_001833"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDG6304092.1"
                     /translation="MLRIAIAKGRLMDSLINYLDVIEYTTLSETLKNRERQLLLSVDN
                     IECILVKGSDVPIYVEQGMADIGIVGSDILDERQYNVNNLLNMPFGACHFAVAAKPET
                     TNYRKIATSYVHTAETYFKSKGIDVELIKLNGSVELAGVVDMVDGIVDIVQTGTTLKA
                     NGLVEKQHISDINARLITNKAAYFKKSQLIEQFIRSLEVSIANA"
     gene            1661..2911
                     /locus_tag="PF788_001834"
     CDS             1661..2911
                     /locus_tag="PF788_001834"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDG6304093.1"
                     /translation="MLNAQQFLNQFSLEAPLDESLYPIIRDICQEVKVHGDKALKMYN
                     LTFDHTKTDHLEISHEQIKAAFDTLDEKTKQALQQSYERIKAYQESIKQTNQQLEESV
                     ECYEIYHPLESVGIYVPGGKASYPSTVLMTATLAQVAGVENIVVVTPPQPNGVSQEVL
                     AACYITQVDQVFQVGGAQSIAALTYGTETIPKVDKIVGPGNQFVAYAKKYLFGQVGID
                     QIAGPTEIALIIDETADLDAIVYDVFAQAEHDELARTYAISEDAQVLKDLESRIAKAL
                     PNVDRYDIVSKSIANQHYLIHASNFDEACHVMNTIAPEHASIQTVNPQPYIEKVKYVG
                     ALFIGHYSPEVIGDYVAGPSHVLPTNRTARFTNGLSVNDFLTRNTVIHLSKDTFEQIA
                     DSAQHIAHVEALYNHQQSILIRQS"
     gene            2927..3940
                     /locus_tag="PF788_001835"
     CDS             2927..3940
                     /locus_tag="PF788_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HDG6304094.1"
                     /translation="MIYIDKNESPVTPLDEKTMTSIISATPYNLYPDAAYEQFKEAYA
                     KFYGLSPEQIIAGNGSDELIQKLMLIMPEGPALTLNPDFFMYQAYAAQVNREIAFVDA
                     GSDLTFDLETILTKIDEVQPSFFIMSNPHNPSGKQFDTAFLTAIADKMKALNGYFVID
                     EAYLDYGTAYDVELAPHILRMRTLSKAFGIAGLRLGVLISTAGTIKHIQKIEHPYPLN
                     VFTLNIATYIFRHREETRQFLTMQRQLAEQLKQIFDTHVADKMSVFPSNANFVLTKGS
                     AAQQLGQYVYEQGFKPRFYDEPVMKGYVRYSIATASQLKQLEEIVKEWSAKYDLSKTT
                     KHS"
     gene            3909..4487
                     /gene="hisB"
                     /locus_tag="PF788_001836"
     CDS             3909..4487
                     /gene="hisB"
                     /locus_tag="PF788_001836"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HDG6304095.1"
                     /translation="MIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLFTFH
                     SGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLAR
                     VVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHE
                     IEAIFKAFSRALGIALTATDDQRVPSSKGVIE"
     gene            4484..5062
                     /gene="hisH"
                     /locus_tag="PF788_001837"
     CDS             4484..5062
                     /gene="hisH"
                     /locus_tag="PF788_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDG6304096.1"
                     /translation="MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILP
                     GVGHFKDAMSEIKRLNLNAILAKNTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNI
                     SRIQTEYPVPHLGWNNLVSKHPMLNQDVYFVHSYQAPMSENVIAYAQYGADIPAIVQF
                     NNYIGIQFHPEKSGTYGLQILRQAIQGGFIND"
     gene            5055..5759
                     /locus_tag="PF788_001838"
     CDS             5055..5759
                     /locus_tag="PF788_001838"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-((5-
                     phosphoribosylamino)methylideneamino)imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDG6304097.1"
                     /translation="MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFE
                     CVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYC
                     IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRRLSDI
                     PLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAA
                     IIGKAAHQASFWEGLK"
     gene            5756..6514
                     /gene="hisF"
                     /locus_tag="PF788_001839"
     CDS             5756..6514
                     /gene="hisF"
                     /locus_tag="PF788_001839"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000592599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDG6304098.1"
                     /translation="MIKKRIIPCLDVKDGRVVKGIQFKGLRDIGNPVDLAMYYNEAGA
                     DELVFLDISKTEEGHSLMLEVIEQTASRLFIPLTVGGGIQSLDDITQLLNHGADKVSL
                     NSSALKNPQLIKQASDKFGRQCICIAIDSYYDPERKAHYCCTTGGKKMTNIKVYDWVQ
                     QVEQLGAGELLVTSMGHDGMKQGFDIEHLANIKSLVNIPIIASGGGGNAQHFVELFDQ
                     TDVSAGLAASILHDRETTVQSIKEVIRQGGIAVR"
     gene            6511..7143
                     /locus_tag="PF788_001840"
     CDS             6511..7143
                     /locus_tag="PF788_001840"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000170495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDG6304099.1"
                     /translation="MTKYKIDFSKGLVPAILQDNQTKQVLMLGYMNQEAFDKTIEDGV
                     VCFYSRSKQRLWTKGETSGHTQRVKDIHVDCDNDTILIDVIPNGPTCHTGSQSCFNTE
                     VPFSVQTLAQTVQDSAQSNNEKSYTKYLLTEGIEKITKKYGEEAFEVVIEAIKGDKKA
                     FVSEVADELYHLFVLMHALGVDFSEIEAELARRHHKRNNFKGERQNIEQW"
     gene            7336..7515
                     /locus_tag="PF788_001841"
     CDS             7336..7515
                     /locus_tag="PF788_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000837587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304100.1"
                     /translation="MKSKLSNSGIDVTVKDVEKYMNRYNEVMKGKNGEKAKELCLSLL
                     PINIIVVFTFFVFIL"
     gene            8236..10278
                     /gene="lip1"
                     /locus_tag="PF788_001842"
     CDS             8236..10278
                     /gene="lip1"
                     /locus_tag="PF788_001842"
                     /EC_number="3.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK domain-containing triacylglycerol lipase
                     Lip1"
                     /protein_id="HDG6304101.1"
                     /translation="MKSQNKYSIRKFSVGASSILIATLLFLSGGQAQAAEKQVNMGNS
                     QEDTVTAQSIGDQQTRENANYQRENGVDEQQHTENLTKNLHNDKTISEENHRKTDDLN
                     KDQLKDDKKSSLNNKNIQRDTTKNNNANPSDVNQGLEQAINDGKQSKVASQQQSKEAD
                     NSQDSNANNNLPSQSRIKEAPSLNKLDQTSQREIVNETEIEKVQPQQNNQANDKITNY
                     NFNNEQEVKPQKDEKTLSVSDLKNNQKSPVEPTKDNDKKNGLNLLKSSAVATLPNKGT
                     KELTAKAKDDQTNKVAKQGQYKNQDPIVLVHGFNGFTDDINPSVLAHYWGGNKMNIRQ
                     DLEENGYKAYEASISAFGSNYDRAVELYYYIKGGRVDYGAAHAAKYGHERYGKTYEGI
                     YKDWKPGQKVHLVGHSMGGQTIRQLEELLRNGNREEIEYQKKHGGEISPLFKGNHDNM
                     ISSITTLGTPHNGTHASDLAGNEALVRQIVFDIGKMFGNKNSRVDFGLAQWGLKQKPN
                     ESYIDYVKRVKQSNLWKSKDNGFYDLTREGATDLNRKTSLNPNIVYKTYTGEATHKAL
                     NSDRQKADLNMFFPFVITGNLIGKATEKEWRENDGLVSVISSQHPFNQAYTKATDKIQ
                     KGIWQVTPTKHDWDHVDFVGQDSSDTVRTREELQDFWHHLADDLVKTEKLTDTKQA"
     gene            complement(10725..11777)
                     /gene="icaC"
                     /locus_tag="PF788_001843"
     CDS             complement(10725..11777)
                     /gene="icaC"
                     /locus_tag="PF788_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide intercellular adhesin
                     biosynthesis/export protein IcaC"
                     /protein_id="HDG6304102.1"
                     /translation="MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQF
                     YIRNIVIFGTPCFIILSQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLL
                     TDSSFNKQFIENVLLGQWYGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQ
                     SFLYYFTNNTAFHDTVLHYYPLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVI
                     MIVLAVATYFVFIALANGDYWNVTSFSYSLTPYNSIMFIVILGICTHFKTMLFNTIQM
                     ISAFSFFIYLLHPIILDSLFAYTNIFEDNTMVFLAISLLFILGLCIGVGMILREFYIF
                     RFIIGKQPYKLNINAY"
     gene            complement(11764..>12310)
                     /gene="icaB"
                     /locus_tag="PF788_001844"
     CDS             complement(11764..>12310)
                     /gene="icaB"
                     /locus_tag="PF788_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="intercellular adhesin biosynthesis
                     polysaccharide N-deacetylase"
                     /protein_id="HDG6304103.1"
                     /translation="KFPKRSVWINFDDMDETIYENAYPILKKYKIPATGFIITGHVGE
                     ENFHNLDMISKKELKEMYKTGLWEFETHTHDLHNLSKNNKSKLMKASEATIIKDLNKS
                     EKYLTKNFKKSQKTIAYPYGLMNDDKLPVIKKAGLKYGFSLEEKAVTPNSNDYYIPRI
                     LISDDAFEHLIKRWDGFHEKD"
BASE COUNT         4507 a         1832 c         2333 g         3638 t
ORIGIN      
        1 atcttggtta agcattttta taggcacaaa tgtcttgcct tttttatttt aaaaaatttt
       61 aaaatcaata caccgaattt tctgaaaaag gttgtaatgt attgctaaaa atgataagtt
      121 attaatcata ttacacttta gcgtggtaga gaagtaaagc aaacaacgaa aataccaagt
      181 gattttaaat acagtattga aagtaaaggg tggtcgagtg aataattcag aacaattaat
      241 tgcgttaaaa gaatcggaaa cagcattttt aaaatatttt aataaagcgg attatgagtt
      301 agttgatttt agtgtggttg aaaagttgga ctggaaacaa ttgaaccatg aggatttgca
      361 gcagatgggt gagcgaaatt tttggcaaca tgagcatcaa atttatgcac ttcgaaatga
      421 ttttacagat caattattgc gttattactc aatgtatcca actgcagcaa caaaagtggc
      481 atacacaggt ttaatcattc ggaataatga agcggctgta caagttggtt tggaaaacta
      541 tgcaccatca ttagcgaatg tgcaacagag cttaaagctc tttattcagt ttattcaaca
      601 gcagttgaga gacaacgtgc attttgttgt attgggacat tatcaattgc ttgatgcctt
      661 actcgataaa tcgttacaaa caccagacat actatcaatg attgaggaac gtaatttatc
      721 gggactggtt acatatttgt cgactgaaca tccaatcgtg caaatcttga aagagaatac
      781 gcaacaacaa ttaaatgtat tggaacacta tattccaaat gaccatccag cactcgttga
      841 attaaaaata tgggaacgtt ggttacataa acaaggttac aaagacatcc atttagatat
      901 tactgcgcag ccacctagat cctattacac aggtttattt attcaatgtc attttgctga
      961 aaatgaatct cgagttttaa caggtggtta ttacaaagga agcatcgaag ggtttggatt
     1021 aggattaaca ctttaagtaa gggagtatgc acaatgttaa gaatcgccat agccaaagga
     1081 cgtctaatgg atagtttaat taactattta gatgtaattg aatatacgac attatcagaa
     1141 acattaaaaa atagagaacg ccaattatta ttaagtgtag ataatattga atgcatttta
     1201 gtaaaaggaa gtgacgtgcc aatctatgtg gaacaaggaa tggcagacat aggcattgtt
     1261 ggtagcgaca tattagatga gcgccaatat aatgttaata atttgttgaa tatgcctttt
     1321 ggagcatgtc attttgcggt tgcagcgaaa cctgaaacga ccaattatcg taaaatcgca
     1381 acgagttatg ttcatactgc tgaaacatat tttaaatcaa aaggtattga tgtcgaattg
     1441 attaaattga atggctctgt tgaattggcc ggtgttgtag atatggtaga cggaattgtc
     1501 gacatcgttc aaacaggtac tacgctaaaa gcgaacggac tggttgaaaa gcaacatatt
     1561 agtgatatca atgcaagatt aataactaat aaagcagctt attttaaaaa atcacaatta
     1621 atagagcaat ttattcgctc tttggaggtg tctattgcca atgcttaatg cacaacaatt
     1681 tttaaatcaa ttttcattag aagcaccatt agatgagtca ttgtatccaa ttattcgcga
     1741 tatttgtcag gaagttaaag ttcatggaga taaggctttg aaaatgtata atctaacatt
     1801 cgatcatacg aaaacagatc atttagaaat tagtcatgaa caaattaaag cagcatttga
     1861 cacattagat gaaaaaacaa aacaagcatt acaacaaagt tatgaaagaa ttaaagcata
     1921 tcaagaaagt attaaacaga cgaatcaaca gttagaagaa tcagtggagt gttatgaaat
     1981 ataccatcca ctagaaagtg tcggtattta tgtgcctggt ggtaaagcaa gttatccttc
     2041 aacggtatta atgacagcga cgttagcaca agtagcaggt gtggaaaata ttgtcgttgt
     2101 gacaccacct caacctaatg gtgtgtctca agaagtatta gcagcatgct atattacgca
     2161 agttgatcaa gtatttcaag ttggtggtgc tcaaagtatt gctgcgttaa cttatggcac
     2221 agaaacgata cctaaagttg ataagattgt aggtccaggc aatcaatttg ttgcatatgc
     2281 caagaaatat ttatttggac aagtaggtat tgaccaaata gctggaccaa cagaaatagc
     2341 acttattatt gatgaaacag cagatttaga tgccatcgta tatgatgttt ttgcacaagc
     2401 agaacatgat gaattagcac gtacatatgc cattagtgaa gatgcgcaag tccttaaaga
     2461 tttagaatca cgtattgcta aagcattgcc taatgtggac agatacgaca ttgtttctaa
     2521 aagtatcgct aatcaacact accttatcca tgctagtaat tttgatgaag catgccatgt
     2581 catgaataca atcgcgcctg aacatgcgtc gattcaaaca gtaaatcctc aaccatatat
     2641 tgaaaaagtg aaatatgtgg gtgcattgtt tattggacat tattcgccag aggtcatagg
     2701 agattacgtt gcaggtccaa gtcatgtatt acctacaaat agaacagcta gatttaccaa
     2761 tgggttatcg gtcaatgatt tcttaacacg gaacacggtc atccatttat caaaagatac
     2821 gtttgaacaa attgctgatt cagcacaaca tattgctcat gttgaagcat tatacaatca
     2881 ccagcagtct attttaatac gtcagtctta ggggagtgta attgaaatga tttatattga
     2941 taaaaatgaa agtccagtta cgccgttgga tgaaaaaaca atgacgtcta ttattagtgc
     3001 aacgccatat aatttatatc ctgatgcagc atatgaacaa ttcaaggaag cttatgctaa
     3061 gttttacgga ttatcgcctg aacaaattat tgcaggaaat ggatctgatg aattgattca
     3121 aaagttaatg ctgatcatgc cagaaggtcc ggcattaacg ctaaatcctg atttttttat
     3181 gtatcaagca tatgcggcac aagtaaatcg tgaaattgca tttgtagatg caggatcaga
     3241 tttaacgttt gatttggaaa ccattttaac gaaaatcgat gaagtacaac catcattttt
     3301 tattatgagt aatccacata acccttcagg caagcaattt gatacggcat ttttaacagc
     3361 tattgcagat aagatgaaag cattaaacgg atactttgtc attgatgaag catatttaga
     3421 ttatggtacg gcatatgacg tggaactggc accacacatc ttaagaatgc gtacattatc
     3481 aaaggcgttt ggaattgccg gcttaagatt aggtgtctta attagtactg ctggaacgat
     3541 aaagcatatt caaaaaatag aacatccata tccattaaat gtatttacgc taaatattgc
     3601 gacttatatt tttagacata gagaagagac aagacaattt ttaacgatgc aacgacagtt
     3661 agctgagcag ttaaaacaaa tatttgatac acatgttgca gataaaatgt cagtgttccc
     3721 atcaaatgct aattttgtac ttactaaagg ctcagcagcg caacaattag gacaatacgt
     3781 atatgaacaa ggatttaaac ctcgctttta tgatgagccg gtgatgaagg gctatgtaag
     3841 atactcaatt gcaacagcat cacagttaaa gcaattagaa gaaattgtta aagaatggag
     3901 tgcaaaatat gatttatcaa aaacaacgaa acacagctga aacgcaacta aatatttcaa
     3961 tatctgatga tcagtcacca tcgcatatta atacaggtgt gggcttttta aatcatatgt
     4021 taaccttgtt tacatttcat agcggtctgt cattaaacat tgaggcacaa ggtgatattg
     4081 acgtagatga tcaccacgta actgaagata tcggcattgt cattggccaa ttgttacttg
     4141 aaatgattaa agataaaaag catttcgttc gttatggaac gatgtacatt ccaatggatg
     4201 aaacattagc acgtgtcgtt gtggatataa gtgggcgccc atacctatca ttcaatgcat
     4261 cattaagtaa agaaaaagtt ggtacgtttg atacggagtt agtagaagaa ttttttagag
     4321 cggtcgtaat caatgcaaga ttaacaacgc atattgattt aattcgtgga ggtaatacac
     4381 accatgaaat tgaagctata ttcaaagcgt tttcccgtgc attaggcata gcgctaactg
     4441 caactgatga tcagcgtgtg ccgtcatcga aaggtgtgat tgaatgattg tcatcgttga
     4501 ttatggatta gggaatatta gtaatgtaaa acgcgctatt gaacatttag ggtatgaggt
     4561 ggttgtctca aatacctcaa aaataatcga tcaagcagaa acaatcatat tgcccggtgt
     4621 cggccatttt aaagatgcga tgtcagagat aaaacgatta aatctcaatg caatattggc
     4681 taagaatact gataagaaga tgattggtat ttgtttaggc atgcaattaa tgtatgagca
     4741 tagtgatgaa ggcgatgcat ctggattagg gtttatccca ggaaatattt cgcgtatcca
     4801 aacagaatac ccagtgccac acttaggctg gaataattta gtgagtaagc accctatgtt
     4861 aaatcaagat gtttatttcg tacattctta tcaagcgccg atgtcagaaa atgtaattgc
     4921 atatgcgcag tatggggctg atattccggc aattgttcaa tttaacaatt atattggtat
     4981 tcaattccat cctgaaaaaa gcggtacata tgggttacaa attttgcgtc aggcaataca
     5041 agggggattt ataaatgatt gaattatggc cagcgattga tttgattggg tcaacaagtg
     5101 tgaggttaac agagggtaaa tatgatagtg aagaaaaaat gtcacgctcg gctgaagaaa
     5161 gtattgctta ctatagtcaa tttgaatgtg tgaatcgtat tcatatcgtc gacttgatag
     5221 gtgctaaggc acagcatgcc cgagagtttg attatattaa gtcattgagg agattaacaa
     5281 ccaaagatat tgaagtaggt ggtggcattc gtacgaagtc acaaatcatg gactactttg
     5341 ccgcagggat taattattgc atagttggaa cgaaaggtat tcaagatact gattggctta
     5401 aagagatggc acatacattt ccaggtcgca tttatttatc tgttgatgcc tatggagaag
     5461 atattaaagt gaacggatgg gaagaggaca cagagttaaa tttatttagt tttgtgagac
     5521 ggttatcgga tatacctctt ggcggcatta tatatactga tattgctaaa gatggcaaaa
     5581 tgtccggacc taactttgaa ttaactggtc aattagtaaa ggcaacgacg attcctgtca
     5641 ttgcttccgg tggtattaga catcagcaag atattcaacg attagcgtcg ctaaatgttc
     5701 acgctgctat tataggaaag gctgcacatc aagcatcttt ttgggagggg ctaaaatgat
     5761 taaaaaacgt atcattccat gtttagatgt caaagatggt cgtgtcgtta aagggattca
     5821 atttaaagga ttaagggata ttgggaatcc tgttgattta gcaatgtatt acaatgaagc
     5881 gggtgctgat gaattagtat ttttagacat ctctaagacg gaagagggtc atagcttaat
     5941 gctagaagtg attgaacaga cagcgtcacg cttgtttatc cctcttactg tagggggtgg
     6001 gattcaaagt ctcgatgata ttacccaatt gctaaatcat ggtgcagata aagtatcatt
     6061 aaattcaagt gctttaaaaa atccacagct cattaaacaa gcgagtgata aattcggtag
     6121 acaatgcatc tgcatagcaa ttgatagcta ttatgatcct gaaagaaaag cacattattg
     6181 ttgtacgact ggtggtaaaa aaatgacaaa tattaaagta tatgactggg tacagcaagt
     6241 agaacagtta ggtgcaggtg agctcctcgt tacaagtatg ggacatgatg gtatgaaaca
     6301 aggctttgat attgaacacc tagcaaatat taagtctctt gtaaatattc caatcattgc
     6361 ttctggtggt ggtggcaatg cacaacactt tgtagaatta tttgatcaga cggatgtttc
     6421 tgcaggttta gctgcaagta tattacatga tcgagaaacg acggttcaat ctattaaaga
     6481 agtgatacgg caagggggta tagcagtaag atgaccaaat ataaaattga ttttagcaaa
     6541 ggtttagtgc cagcaatttt acaagataat caaacaaaac aagtattgat gttgggttat
     6601 atgaaccaag aagcttttga taaaacgata gaagatggtg tggtatgttt ctattcgcgg
     6661 tcgaaacaac ggctatggac aaaaggtgaa acatctggtc atacgcaacg tgttaaagat
     6721 attcatgtag attgcgacaa tgacactatt ttaattgatg tcataccaaa tggaccaaca
     6781 tgtcatacag gcagtcaaag ttgtttcaac acagaagttc cattttcagt gcaaacatta
     6841 gcgcagacag ttcaagatag tgcccaatcc aataatgaaa agtcatatac aaaatattta
     6901 ttaacagaag gtatagaaaa gattacaaaa aaatacggtg aagaagcttt tgaagtcgta
     6961 attgaagcaa ttaaaggtga caaaaaagca tttgtaagtg aagtagcaga tgaactttat
     7021 catttatttg tcttgatgca tgcgcttggc gtcgattttt cagaaattga ggcggaatta
     7081 gcgcgtagac atcataagcg caataacttt aaaggtgaac gacaaaatat cgaacagtgg
     7141 taaagcaagt atggactaag atataaggaa aaggatcatg gcttatacac ttacaaatat
     7201 tgtggaaaac gtgacatttt caagtttaaa atacgacacc aacatatttt aactatgaat
     7261 gctgtgatgg tactaaagtt gcgaactcgt tatagataag tagtggataa tcacaatacg
     7321 aaatcaaaaa taattataaa aagtaaattg agcaactcag gaatagatgt cactgttaaa
     7381 gatgtcgaaa agtatatgaa tcgatataat gaagttatga agggaaaaaa tggcgaaaaa
     7441 gctaaagagt tatgtttgtc gttactacct attaatatca tagttgtctt tacattcttt
     7501 gtatttatac tataaataca aatatatcta gcctgaaata gaaatgtcat agcctattta
     7561 aaagacaatc tccattagaa ctaagatatg catcccgaaa gttagactaa aaaactaact
     7621 ttatgggatg tatttttatg ctaatcatca taaattcgag attaagttaa aggtagttca
     7681 agagtaatta aacaataaat taaaaatagt aggatactta ctttgaggga agaaaattaa
     7741 ctgtatatat ttagtttagg aacaagtatt acggtttatc ctgatacaat tattgtggat
     7801 gggatgatat ttttaggttt aaaatacgac accagcaaac ataataactg taatagctca
     7861 taaatctccc catatagcta atctaaaaaa ataatacatc attggaatta agccccaagc
     7921 atgtaaatat taaaaatcaa aaaagatata tgtaaaaaag ttacaatttg cataattaaa
     7981 ttgtgtctaa ttattgacta attaaatttt gccaaatata atattaatta ataatttgaa
     8041 atgattagcg tatacacttt aaattctctt tggagaatat attttttaaa tacaaatgta
     8101 aacgctttct cgtcaaatta aacaatagaa aggatggtca ttatgagtgc ttggttaagt
     8161 aaattatttg agtttattcc tcgaataatt atcaatttgt ttatctaaaa taaaaaaata
     8221 gaggtgctga caatgatgaa aagtcaaaat aagtatagta ttcgtaaatt tagtgtaggt
     8281 gcatcttcca ttttaatagc tacattacta tttttaagtg gtggacaagc acaagcagct
     8341 gagaagcaag tgaatatggg aaattcacag gaggatacag ttacagcaca atctattggg
     8401 gatcaacaaa ctagggaaaa tgctaattat caacgtgaaa acggtgttga cgaacagcaa
     8461 catactgaaa atttaactaa gaacttgcat aatgataaaa caatatcaga agaaaatcat
     8521 cgtaaaacag atgatttgaa taaagatcaa ctaaaggatg ataaaaaatc atcgcttaat
     8581 aataaaaata ttcaacgtga tacaacaaaa aataacaatg ctaatcctag cgatgtaaat
     8641 caagggttag aacaggctat taatgatggt aaacaaagta aagtggcgtc acagcaacag
     8701 tcaaaagagg cagataatag tcaagattca aacgctaata acaatctacc ttcacaaagt
     8761 cgaataaagg aagcaccatc attaaataag ttagatcaaa caagtcaacg agaaattgtt
     8821 aatgagacag aaatagagaa agtacaacca caacaaaata atcaagcgaa tgataaaatt
     8881 actaactaca attttaacaa tgaacaagaa gtgaaacctc aaaaagacga aaaaacacta
     8941 tcagtttcag atttaaaaaa caatcaaaaa tcaccagtag aaccaacaaa ggacaatgac
     9001 aagaaaaatg gattaaattt attaaaaagt agtgcagtag caacgttacc aaacaaaggg
     9061 acaaaggaac ttactgcaaa agcgaaagat gatcaaacga ataaagttgc caaacaaggg
     9121 cagtataaaa atcaggatcc tatcgtttta gtgcatggtt tcaatgggtt tacagatgat
     9181 attaatcctt cagtgttagc tcattattgg ggcggtaata aaatgaacat tcgccaagat
     9241 ttagaagaaa atggttacaa agcttatgaa gcaagtataa gtgcttttgg aagtaactat
     9301 gaccgcgcag ttgaacttta ttattatatc aaaggcggtc gtgtagatta tggtgcagca
     9361 catgcagcaa aatatggaca tgaacgttat ggaaaaacat acgaaggaat ttacaaagac
     9421 tggaaaccag gacagaaggt acacctagtt ggacatagta tgggcggtca aacgatacgt
     9481 caactagaag aattactgcg taatggtaat cgtgaagaaa tagagtatca aaagaaacat
     9541 ggtggcgaaa tttctccact attcaaaggt aatcatgaca atatgatttc atcaattact
     9601 actttaggaa caccacataa tggtacacac gcatcagatt tagctggtaa tgaagcttta
     9661 gtgagacaaa tcgtatttga tatcggtaaa atgtttggta ataaaaattc aagagtagac
     9721 ttcgggttgg ctcaatgggg tctaaaacag aagccaaatg aatcatatat tgattatgtc
     9781 aaacgcgtta aacaatctaa tttatggaaa tcaaaagata atggatttta cgatctgacg
     9841 cgtgagggtg caacagattt aaatcgtaaa acgtcgttga accctaacat tgtgtataaa
     9901 acatacactg gtgaagcaac gcacaaagca ttaaatagcg atagacaaaa agcagactta
     9961 aatatgtttt tcccatttgt gattactggt aacttaatcg gtaaagctac tgaaaaagaa
    10021 tggcgagaaa acgatggttt agtatccgtt atttcttctc aacatccatt taatcaagct
    10081 tatacaaaag cgacagataa aattcaaaaa ggcatttggc aagtgacgcc tacaaaacat
    10141 gattgggatc atgttgactt tgtaggacaa gacagttctg atacagtgcg cacaagagaa
    10201 gaattacaag atttttggca tcatttagca gacgatttag tgaaaactga aaagctgact
    10261 gatactaagc aagcataatt tataaagtaa agggaggaat taataatgac tgcagacttc
    10321 tttcaattaa tcggatcatt atttagaatt ctaaaagaat tattcaagta aaacattggc
    10381 gaggccccaa cataaagaat ttcgaaaaga aattctacaa acaatgcaag ttggcggggc
    10441 cccaacaaag aagctggcgg aaagtcagct tacaataatg tgcaagttgg cggggcccca
    10501 acatagaagc tggcggaaag tcaggttaca ataatgtgca agttggggtg ggacgacgaa
    10561 ataaattttg cgaaaatatc atttctgtcc cactcccatt ggcatttacg aagtttaaat
    10621 gtgcaattag aatatatgta taacaatatt aaacacgcgg taaaacgaag tcagtcaatt
    10681 caaactgatt tcgcccaccg cgtgttttta acatagctta ataattaata agcattaatg
    10741 ttcaatttat atggttgttt tccaataata aacctaaaga tatagaattc acgcaatatc
    10801 atgccgacac ctatacataa tcctaaaatg aatagtagtg atatcgctag aaagaccatt
    10861 gtattatcct caaatatatt tgtatatgca aacaatgagt ctagaatgat tggatgtaat
    10921 aaataaataa agaatgagaa agcactaatc atttgaatcg tattaaataa cattgtttta
    10981 aaatgcgtgc aaatacccaa gataacaata aacataatac tattatatgg tgttaatgaa
    11041 tatgaaaagc tggtaacgtt ccaatagtct ccatttgcta acgcaataaa cacaaaataa
    11101 gtagctacag ctaatacaat cataataact aaataacgtt ctaagaaatt taatacacgt
    11161 tcgtagttat aacccatata tgcacctaag aagaaataaa aaatccatcc gaatattata
    11221 gtattttcac ttaatggata atagtgtagc acggtatcgt gaaacgctgt gttgttcgta
    11281 aagtaatata aaaatgattg ctgtaaaata aaagataaca ataataatat tttactgttg
    11341 aataggttat agttaatttt aaaaatgata taactcaaaa taaagaattg catgataaca
    11401 acgataaaat agccatacca ttgacctaat aggacatttt caatgaattg tttattgaaa
    11461 cttgaatctg ttaataatga ttcactataa ctgtaaaaca atcccattaa tatgtaagga
    11521 ataagtatat attttacgcg tgtagttaag tatctatagg tgactttttg gtaattcaag
    11581 gttgtcagta actgtgacaa gataataaag caaggtgtac caaaaatcac aatattacga
    11641 atgtaaaatt gtaacactaa ggatccaccc tccatatttt catgttttaa agtaatttgt
    11701 gtaagtaaat gtgtgataat aataattgca catataatag cacgtaaata tacgagttca
    11761 agtctaatct ttttcatgga atccgtccca tctcttaatt aaatgctcaa aagcatcatc
    11821 actaattaat attctaggga tgtaataatc attggagttc ggagtgactg ctttttcctc
    11881 taatgaaaaa ccgtatttta acccagcttt tttgattacc ggtaatttat cgtcattcat
    11941 caagccataa ggataggcta tagttttctg cgacttttta aagtttttag ttagatattt
    12001 ttcacttttg tttaaatctt ttatgattgt agcttcagaa gctttcatta attttgactt
    12061 attattttta gataagttat gcaaatcgtg ggtatgtgtt tcaaattccc ataacccagt
    12121 tttatacatt tcttttagtt cttttttact aatcatatcg aggttgtgaa agttttcttc
    12181 cccaacatga cctgtgataa taaacccagt tgccggtatt ttatattttt ttaagattgg
    12241 ataagcattt tcataaatag tttcatccat atcatcaaag ttaatccata cacttcgttt
    12301 tggaaactta
//
LOCUS       DAMQWL010000075        12048 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.075, whole genome shotgun sequence.
ACCESSION   DAMQWL010000075 DAMQWL010000000
VERSION     DAMQWL010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 12048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12048
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.075"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(250..3306)
                     /gene="fnbA"
                     /locus_tag="PF788_001845"
     CDS             complement(250..3306)
                     /gene="fnbA"
                     /locus_tag="PF788_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000794614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding protein FnbA"
                     /protein_id="HDG6304104.1"
                     /translation="MKNNLRYGIRKHKLGAASVFLGTMIVVGMGQDKEAAASEQKTTT
                     VEENGNSATDNKTSETQTTATNVNHIEETQSYNATVTEQPSNATQVTTEEAPKAVQAP
                     QTAQPANIETVKEEVVKEEAKPQVKETTQSQDNSGDQRQVDLTPKKATQNQVAETQVE
                     VAQPRTASESKPRVTRSADVAEAKEASNAKVETGTDVTSKVTVEIGSIEGHNNTNKVE
                     PHAGQRAVLKYKLKFENGLHQGDYFDFTLSNNVNTHGVSTARKVPEIKNGSVVMATGE
                     VLEGGKIRYTFTNDIEDKVDVTAELEINLFIDPKTVQTNGNQTITSTLNEEQTSKELD
                     VKYKDGIGNYYANLNGSIETFNKANNRFSHVAFIKPNNGKTTSVTVTGTLMKGSNQNG
                     NQPKVRIFEYLGNNEDIAKSVYANTTDTSKFKEVTSNMSGNLNLQNNGSYSLNIENLD
                     KTYVVHYDGEYLNGTDEVDFRTQMVGHPEQLYKYYYDRGYTLTWDNGLVLYSNKANGN
                     GKNGPIIQNNKFEYKEDTIKETLTGQYDKNLVTTVEEEYDSSTLDIDYHTAIDGGGGY
                     VDGYIETIEETDSSAIDIDYHTAVDSEAGHVGGYTESSEESNPIDFEESTHENSKHHA
                     DVVEYEEDTNPGGGQVTTESNLVEFDEESTKGIVTGAVSDHTTVEDTKEYTTESNLIE
                     LVDELPEEHGQAQGPVEEITENNHHISHSGLGTENGHGNYDVIEEIEENSHVDIKSEL
                     GYEGGQNSGNQSFEEDTEEDKPKYEQGGNIVDIDFDSVPQIHGQNKGNQSFEEDTEKD
                     KPKYEHGGNIIDIDFDSVPHIHGFNKHTEIIEEDTNKDKPSYQFGGHNSVDFEEDTLP
                     KVSGQNEGQQTIEEDTTPPIVPPTPPTPEVPSEPETPTPPTPEVPSEPETPTPPTPEV
                     PSEPETPTPPTPEVPAEPGKPVPPAKEEPKKPSKPVEQGKVVTPVIEINEKVKAVAPT
                     KKPQSKKSELPETGGEESTNKGMLFGGLFSILGLALLRRNKKNHKA"
     gene            complement(3290..3391)
                     /locus_tag="PF788_001846"
     CDS             complement(3290..3391)
                     /locus_tag="PF788_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304105.1"
                     /translation="MLLKTEQYRLAFIKFKKLMNFAFKGRYYSEKQS"
     gene            complement(3775..5133)
                     /locus_tag="PF788_001847"
     CDS             complement(3775..5133)
                     /locus_tag="PF788_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate permease"
                     /protein_id="HDG6304106.1"
                     /translation="MFNEIWPLISVVLGIVILLVLIIGFKLNTFISLIITSMITALML
                     GIPLTKIMETIEKGMGSTLGHIALIFGLGAILGKLLADGGGATRIADTLIQKFGQKHV
                     QWAMLVAAFIVGIALFFEVGLVLLIPLVFTVAKRANVSVLKLGLPMVTALSVTHGFLP
                     PHPGPVVIAKELKANVGDVLLYGMIIAIPVTLIAGPIFNKVAQKMIPSAYTREGDISA
                     LGAQKEFTDQEMPGFGMSLLTATLPVILMLVSTITQLVTGHDKPTNLFESIIYMIGTA
                     GTAMLIAVLFAIVTMGLMRKRKMNHIMESVTNAIYPIGMMLLIIGGGGTFKQVLIDGG
                     VGNTIAKMFEGTEMSPILLAWIVAAVLRIALGSATVAAISTTGIVLPLLQSSDVNVAL
                     VVLAIGAGSVILSHVNDAGFWMFKEYFGLTVKETFLTWSLLETIISVSGIIFILFISL
                     FV"
     gene            complement(5250..6803)
                     /gene="gntK"
                     /locus_tag="PF788_001848"
     CDS             complement(5250..6803)
                     /gene="gntK"
                     /locus_tag="PF788_001848"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDG6304107.1"
                     /translation="MKYMIGVDIGTTSTKSVLYDENGTFIMKHQIGYDLHTPNVDVSE
                     ENPDELFDAVLMTIKYVMRESKVNKDDIKFVSFSAQMHSLIAMDQQHQRLTNNITWAD
                     NRAAKYATVINEVHDGNAIYQRTGTPIHPMSPLAKIFWMKHEWQDVFQRTAKFADIKT
                     YIFYHLFDTYIIDYSMASATGMFNLETLDWDVEALELLGISKEMLPELVPTTYVMKGM
                     KERYATLMGLNKDTPFVIGASDGVLSNLGVNSVGKGEVAVTIGTSGAIRTVIDKPRTD
                     YKGRIFCYVLTEDHYVIGGPVNNGGVVLRWLRDELLASEVETAKRLGVDPYDVLTQIA
                     KRVKPGADGLIFHPYLAGERAPLWNANARGSFFGLTLSHKKEHMIRAALEGVLYNLYT
                     VYLALIEVMNETPKMIKATGGFAKSEVWRQMMSDIFDTELVVPESYESSCLGACVLGL
                     KAVGDIEDFSIVSSMVGATNNHTPIEENVTVYQEIVSIFINLSRSLTENYEQIADFQR
                     QHIAENKTQ"
     gene            complement(6827..7507)
                     /locus_tag="PF788_001849"
     CDS             complement(6827..7507)
                     /locus_tag="PF788_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDG6304108.1"
                     /translation="MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMA
                     KQFNVSRSPIRDAFKLLQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRV
                     KNQERLPIVKEMKKQLEMMKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHL
                     KPVMMALVLTSMRQRMQQNPQDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGK
                     DIEGFWLN"
     gene            complement(7661..8425)
                     /locus_tag="PF788_001850"
     CDS             complement(7661..8425)
                     /locus_tag="PF788_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDG6304109.1"
                     /translation="MSNYSTGELAKLCNVTTRTIQYYDRKGILKPQGFTEGKRRVYTE
                     QQRQTLELILLLKDLGCALSDIDMLLKGEGTLKTLNTLLTMKQQEINQQVKQQQAVLN
                     KIKNVQYYVNEASTSPITHLKDIEHVMSKSAEMKSIRRNIWISAGIIGIIQYSSIISA
                     ILMKNKWPFLIALPFMIGYGIGVTFYYQQKVAYLCPNCQHIFSPSLWAVIKAKHTATT
                     RRFECPNCHETHYCIEVPKAHMSTEQLEISHIQHNN"
     gene            complement(8590..9282)
                     /locus_tag="PF788_001851"
     CDS             complement(8590..9282)
                     /locus_tag="PF788_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HDG6304110.1"
                     /translation="MYVDRKPSLYLEDLRHDFKNSLSKFENGDEAFDTLLGFVELDHI
                     YSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEKLNRKGLQISAETAK
                     EHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQLIKRKDYIQHPKENGYRSLHIVVSI
                     PVFLAERVEVLPVEIQIRTIGMDMWASLEHKIRYKNNAETEKYRDLLKECATEITEVE
                     DKLQQIHSEITE"
     gene            complement(9513..9929)
                     /locus_tag="PF788_001852"
     CDS             complement(9513..9929)
                     /locus_tag="PF788_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2188 domain-containing protein"
                     /protein_id="HDG6304111.1"
                     /translation="MPFTMKGYPEKWKEFEVIKRQKAIEIANAMLKEGYLEKDVVPIA
                     AKKAKDWYRALSKEEIKALEEENFVQFHTATMEKTEVDSEYATTDNEEHIQEQSNQDK
                     SYFDSESIGNQSGGVRQREPLMDGPHPKVVESFKDV"
     gene            complement(10068..11891)
                     /locus_tag="PF788_001853"
     CDS             complement(10068..11891)
                     /locus_tag="PF788_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000586397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HDG6304112.1"
                     /translation="MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVII
                     CNLAFAICMMLGTLTAKTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPI
                     NLPIAPEEALYRGFAILVGGILATMMVLITIVFSKNKAEEQAIQNDFKLISKLLHTYN
                     DKSAFLQVAKTAVDSFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELN
                     AKQIRPLPDELIEMMDHIIAQLDNSEENVRYWRKEVTVTEEFQNLFNHILKIDEMVHA
                     NEARIAYEADMRKPLYSKRIYQNLTLDSIVFRNTLRYTAIMMIAIFIALMFDFEKAYW
                     IPLSAHTILLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALF
                     TEALVGANYAIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAMGIVIAIIGLFVLG
                     QRTASALLPNVMAEVVRKEATLFHYLFSENQYKDDVYQKNTAMNLSVKLNNMTQVYNA
                     ANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLAIFENIAK
                     HFELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV"
BASE COUNT         3526 a         2362 c         1785 g         4375 t
ORIGIN      
        1 aaatttaact aaatttgcat ctagttaata attgcattta tcaaatttgt cttattgatc
       61 caatctaatt tgtactcaca aactagttta aaattctaac tttatctctc agttcgttat
      121 caatcatcag acataaacca atgaagcaat cagaaaacac tctaattttc tattagaaat
      181 ttgatttaat ataaaaaaac aggcttactt catataattt atgaaataaa cccgtcaatt
      241 tttgtttaat tatgctttgt gattcttttt atttctgcgt aataatgcta aacctagaat
      301 gctgaataat ccgccgaaca acataccttt gtttgttgat tcttctccac ctgtttcagg
      361 tagttcagat ttcttagatt gtggtttttt agttggtgcc actgctttaa ccttttcatt
      421 gatttcaata acaggtgtta ctactttacc ttgttccact ggtttagaag gctttttagg
      481 ttcttctttg gcaggtggta ctggtttacc aggttcagct ggtacctctg gtgttggcgg
      541 tgttggagtt tctggctcac tcggcacttc tggtgtcggt ggtgttggtg tttccggctc
      601 acttggtact tctggtgttg gtggcgttgg tgtttccggc tcacttggta cttctggtgt
      661 cggtggcgtt ggtggcacga ttggaggtgt tgtatcttct tcaatcgttt gttgaccttc
      721 attttggccg cttacttttg gaagtgtatc ttcttcaaag tcaacactat tgtgtccacc
      781 gaattgataa cttggtttat ctttatttgt atcttcttca ataatttcag tgtgcttatt
      841 gaatccgtga atatgtggca cactgtcgaa gtcgatatca atgatgttac cgccatgttc
      901 atacttaggt ttgtcttttt ctgtatcttc ctcgaatgac tgattacctt tattttgacc
      961 atgaatttga ggtacactat caaaatcgat atctacgata ttgccacctt gttcatattt
     1021 aggtttgtct tcttctgtgt cttcctcgaa tgactggtta ccgctatttt ggccaccttc
     1081 ataacctaat tcactcttaa tatcaacgtg gctattttct tcgatttctt caatcacgtc
     1141 ataattcccg tgaccatttt cagttcctaa accagaatga gaaatatgat gattgttttc
     1201 agtaatttcc tcgactggtc cttgtgcttg accatgctct tcaggtaatt catccactaa
     1261 ttcaatcaga ttactttcag ttgtatattc tttcgtatct tcaactgttg tatgatcgct
     1321 cactgcgcca gttacaatac cttttgtaga ctcttcgtca aattcaacta agttagactc
     1381 agtagtaacc tgaccaccac ctgggtttgt atcttcttca tattcaacaa catcagcgtg
     1441 atgttttgaa ttttcatgtg tagattcttc aaagtcaatt ggatttgatt cctcagagga
     1501 ctcagtgtat cctccaacgt gacctgcttc gctatccaca gcagtatggt aatcgatatc
     1561 aatagctgat gaatccgttt cttctattgt ttcaatgtat ccatcaacat atccacctcc
     1621 accatctata gctgtgtggt aatcaatgtc aagagttgat gaatcatatt cctcttcaac
     1681 agtagttact aaattcttat catattgacc tgtaagagtt tctttaattg tatcttcttt
     1741 atattcaaat ttattatttt gaataatcgg accatttttc ccatttccgt tcgctttatt
     1801 actgtataaa actaaaccat tatcccaagt taaggtatat cctctatcat aataatactt
     1861 ataaagttgc tctggatgtc ctaccatttg tgttctaaaa tcaacttcat cagtaccatt
     1921 taaatactct ccatcatagt gaacaacata agttttatct agattttcta tattcaatga
     1981 atagcttcca ttattttgta aattcaaatt cccactcata ttacttgtga cttctttaaa
     2041 tttagaagta tctgtcgtat ttgcatatac actcttcgct atgtcttcat tattacccaa
     2101 gtattcaaat atcctaactt ttggttgatt tccattctga ttactacctt tcattaaagt
     2161 tccagtaaca gtcacacttg tcgttttacc attattaggt ttaataaatg caacatgcga
     2221 aaatctatta ttcgctttat taaatgtctc aatcgatcca tttaaattgg cataataatt
     2281 cccaatacca tctttatatt taacatctaa ttcctttgaa gtttgttctt catttagtgt
     2341 tgaagttata gtttgatttc cattagtttg tacagtttta ggatcaataa ataaattaat
     2401 ttctagttca gccgttacat caaccttatc ttcaatatca tttgtaaatg tatatctaat
     2461 ctttccacct tctaaaactt cacctgtcgc cattacgact gaaccatttt taatttctgg
     2521 tacttttcta gcagttgata cgccatgcgt atttacatta tttgataaag taaagtcaaa
     2581 gtagtcacct tgatgtaaac cattctcaaa tttcaactta tattttagta ccgctcgttg
     2641 tcctgcatga ggttctactt tatttgtatt gttatgcccc tcaatagaac caatttctac
     2701 tgtaacttta cttgttacat ctgtacccgt ttccactttc gcgttactag cttccttagc
     2761 ttccgctaca tctgctgatc ttgtcacacg tggcttactt tctgatgccg ttcttggctg
     2821 tgccacttca acttgtgttt ctgcgacttg attttgtgta gcctttttag gtgttaaatc
     2881 tacttgtctt tgatctccgc tattgtcttg agattgtgtt gtttccttaa cttgaggttt
     2941 cgcttcttcc ttaactacct cttctttaac tgtttctata tttgctggtt gtgcagtttg
     3001 tggtgcttgt actgcttttg gtgcttcttc agttgttact tgtgttgcgt ttgacggttg
     3061 ttctgttact gttgcgttat atgattgagt ttcttctata tgattaacgt tagttgcagt
     3121 tgtttgtgtt tcacttgttt tattatcagt agctgaattc ccattttctt ctactgtagt
     3181 tgtcttttgt tctgatgctg cagcttcttt gtcttgtccc atcccaacaa cgatcattgt
     3241 tcctaagaat actgatgctg ctcccaattt atgttttcta atgccgtacc taagattgtt
     3301 tttcactata atatctccct ttaaatgcaa aattcattaa ttttttaaac ttaataaatg
     3361 caagtctata ttgttcggtt tttaaaagca atacaaaaaa gcgagttaat gaaaagttaa
     3421 gattgtcatt aattttatgt taattgataa ttttattatt tgaaatatac ctataaattg
     3481 tattcaagtc atcagaaacc cttgtcacac aaggcttgta ttttttatac ttattttttt
     3541 aaattaaatt catcattatc taatttaaaa caatatacta aacgtttcat aattatcgcc
     3601 tgtacaatac gcacaaaaac atgtcttgaa acgcctttca tcactctaaa atacccaata
     3661 tactttttat atcgttcgga ttctgagtat ttcagacgat tttctgcata aaaataaacg
     3721 tgtttcaagg caatatattg caattaccta aaaacacgtt tacttaatat ttagttaaac
     3781 aaataagcta atgaataaaa tgaagatgat acctgaaacg gaaataatcg tttctaataa
     3841 tgaccatgtt aagaatgttt cttttacagt taaaccaaaa tattctttaa acatccaaaa
     3901 tcctgcgtca tttacatgag acaaaatcac actacctgca cctatcgcaa gtacaactaa
     3961 tgcaacattt acatctgatg attgtaataa tggtaagaca atacctgtag ttgaaatcgc
     4021 agctactgta gccgaaccta atgcgatacg tagcacagct gcaacaatcc atgctagtaa
     4081 aatcggagac atctctgtac cttcaaacat tttagcaatt gtatttccga caccgccgtc
     4141 aattaatact tgtttaaatg taccgccacc gccaataatc aataacatca ttccgattgg
     4201 ataaatcgca ttcgtcactg attccataat atgattcatc ttacgctttc tcattaatcc
     4261 catcgtaacg attgcaaata atactgctat tagcatggct gtccctgctg ttcctatcat
     4321 ataaatgata gattcaaata gatttgtagg tttgtcatgc ccagttacaa gttgcgttat
     4381 cgtagacact aacattaata tgactggtaa tgttgctgtt aataaactca taccaaatcc
     4441 tggcatctct tgatccgtaa attctttttg tgcacctaac gctgaaatat cgccttctcg
     4501 tgtatacgca gacggaatca ttttttgtgc aactttgtta aatataggcc ctgcaatgag
     4561 tgtaactgga atggcaataa tcataccata cagtaataca tctccaacat ttgcctttaa
     4621 ttcttttgcg atgactaccg gtcctggatg tggtggtaaa aagccatgtg tcactgataa
     4681 agctgttacc ataggtagtc ctagttttaa cactgaaaca tttgcgcgtt ttgctactgt
     4741 aaatactaat ggaatcagta agactaaacc tacttcaaag aacaatgcaa taccgacgat
     4801 aaatgctgca acaagcattg cccattgtac atgtttttga ccaaattttt gaatcaacgt
     4861 gtctgcgatt cgagttgcac caccaccatc agcaagcaat ttcccaagta tggcacctaa
     4921 accgaatatc agtgcaatgt ggccgagcgt actgcccatt cctttctcaa tcgtctccat
     4981 aattttagtc aatggtatac ctagcattaa cgctgtaatc atcgatgtga taattaatga
     5041 aataaatgta tttaatttaa acccaataat taatactaat aaaataacga tacctaaaac
     5101 aacactgatt aacggccata tttcgttaaa catgacattc ccctctttct cttttcaata
     5161 gaatgtaaca ccgtcgtcgc gcacgtattc cacataatat atagtagtca tggcacaaca
     5221 actttatcta agatgcttga gtgacgtatt tattgtgttt tattttcagc gatatgttgg
     5281 cgttgaaaat ctgcaatttg ttcataattc tctgttaaag aacgacttaa attgataaaa
     5341 atggatacga tctcttggta aacagtgaca ttttcttcaa tcggcgtatg attgtttgtg
     5401 gcaccgacca tcgatgaaac gattgaaaaa tcttcaatgt cacctacagc tttaagtccg
     5461 agcacgcagg cacctaagca tgaactttca taactttcag gaaccactaa ctctgtgtca
     5521 aatatatctg acatcatttg acgccatact tcacttttcg caaaaccacc tgttgctttt
     5581 atcatcttag gtgtttcatt cattacttca ataagcgcaa gatagacggt atacaaattg
     5641 taaagaacac cttctaatgc agcgcgaatc atatgttctt ttttatgaga taaagttaaa
     5701 ccgaagaatg aacctcttgc atttgcgttc caaagcggcg cacgttctcc tgctaaatag
     5761 ggatggaata ttaaaccatc tgcacctggt ttaacacgct ttgcaatttg agttaagaca
     5821 tcataaggat caacaccgag acgtttcgca gtttcgactt cactcgctag caactcgtcg
     5881 cgcaaccatc tcaatacgac accaccatta tttacaggac ctccgatgac gtagtggtcc
     5941 tctgttaaga cataacaaaa tattctacct ttgtaatcag tacgcggttt atctatcaca
     6001 gtacgaatcg ccccagatgt accgattgtg acagcaactt ctcctttacc aacactattg
     6061 acacctaaat tagaaaggac cccatcactc gcaccaataa caaacggtgt atctttatta
     6121 agccccatta atgttgcata acgttctttc atacctttca tcacatacgt tgttggaact
     6181 aattccggca acatttcctt ggaaataccc agcagttcta atgcctcaac atcccaatct
     6241 aatgtttcta aattaaacat ccctgttgcg gaagccattg aataatcaat gatatatgta
     6301 tcaaataaat gatagaaaat gtatgtttta atatctgcaa acttagcagt acgttgaaat
     6361 acatcttgcc attcatgttt catccaaaaa atcttcgcta atggcgacat aggatgaatc
     6421 ggtgtgcctg ttcgctggta aatcgcattg ccatcatgca cttcatttat tactgttgca
     6481 tattttgcag cgcggttatc tgcccaagta atattatttg ttaatctttg atgttgctga
     6541 tccatcgcaa tcaagctatg catttgcgca ctaaatgaca caaacttaat gtcgtcttta
     6601 ttaactttgg attctctcat aacatattta atagtcatta gtactgcatc aaataattca
     6661 tctgggtttt cttctgagac atcaacgttt ggtgtgtgta aatcatagcc tatttgatgt
     6721 ttcatgataa aagttccatt ttcatcatat aagactgact tggtactcgt cgttccaatg
     6781 tcgacaccaa tcatatattt catgataaat ccttctttct ttcattttaa ttcaaccaaa
     6841 atccttcaat atctttacca acatcgtcga aatttaaatg aaacgcttct ttcaaaattt
     6901 gactgtcgta ttgttccact gcatcaataa acacttgatg attatgatgt atgcgttcaa
     6961 aatcttgcgg gttctgttgc atacgttgtc gcatggatgt taaaacgagt gccatcatta
     7021 ctggttttaa atgactccaa aatgagttta aatattgatg attagatgct ttgattaatg
     7081 tttcatgaaa ttcaaagtca tgcttcgtaa atgattctgc atcctcaaat tttactgcca
     7141 ctttcatcat ttcaagttgt ttcttcattt cttttacgat gggtagtcgc tcttgatttt
     7201 taactcttga aaatgcaaat gactctaaca tcagtcgcaa atcatacatt tctttctttt
     7261 cttgttcccc aaacggcaac acatgtgcac ccattctttc taattggatg agttgatttt
     7321 gttgcaataa tttaaatgca tctcgaattg gcgaacgact cacattaaat tgctttgcca
     7381 tttgattttc agtgagtaac gtaccttcag ctatgtgacc attcacaatg cctaagcgta
     7441 attctgccgc gataccttct ccagttgtca taccttccaa ccatttctct ggatatccat
     7501 acatcatcaa agtcactcct tcattacacg acatacttgt atacaagtat gttaatatag
     7561 ttattatgag tttgcaagcg ctttctttac gagcactaaa atagtgacca ccccttttcg
     7621 atttaaattt aaaggaaatg gtcactatca cacgaatgat ttaattgtta tgttgtatgt
     7681 gggatatttc taattgttct gtactcatat gcgctttagg tacttcaatg caataatgcg
     7741 tttcatgaca gtttggacat tcgaatcgac gtgttgtcgc tgtatgtttc gctttgataa
     7801 ctgcccacaa agatggtgag aatatatgct ggcagttagg acataaatag gcaacctttt
     7861 gttggtaata aaaagtaaca ccaatgccat aaccaatcat aaatggtaaa gcaattaaaa
     7921 acggccattt atttttcatc aaaattgcac ttataatgct agaatattga attattccta
     7981 taataccagc actaatccaa atgttacgac gaatactttt catttcagct gatttactca
     8041 tgacatgctc tatgtctttt aagtgtgtga ttggagacgt cgacgcttca tttacgtaat
     8101 attgaacatt tttaattttg tttaataccg cttgttgctg tttaacttgt tggttaattt
     8161 cttgttgttt catagttagt aaagtattga gcgtcttcaa agtaccttca ccttttagca
     8221 acatatctat atcgcttaac gcacaaccta aatctttaag caataagatt aactctaatg
     8281 tttgtcgctg ttgttctgta tacacacgac gctttccttc tgtaaatcct tgtggtttca
     8341 aaataccttt gcgatcataa tattgaatcg ttcgtgttgt cacattgcat aattttgcga
     8401 gttctccagt cgaatagtta gacatagatt ccacctccta taattaccat agttgatgac
     8461 ccgacgtcac gagcaagtac aatttccaca ttttaaagaa atttattata ctaggcgtct
     8521 tatttttatg atttcgtacc atgttgattt acaaactcac tcaaactaag taacacacct
     8581 actaaacatc tactctgtta tttcagaatg aatttgttgt aatttatctt caacttcagt
     8641 aatctctgtc gcacattctt tcagtaaatc tcgatacttt tccgtctctg cattgttttt
     8701 ataacgtatt ttatgttcta aacttgccca catatccata cctatcgttc taatttgaat
     8761 ttcaacaggc aatacctcaa cgcgttctgc taaaaagact ggaatagata caacgatatg
     8821 taaactgcgg taaccatttt ctttagggtg ctgaatataa tctttacgtt ttatcaattg
     8881 tacgtcttct tgtttaagca acatctcttc aatcaaataa atatcatcta agtaattaca
     8941 tactacgcga attccggcaa tatccagtat atgttctttg gcagtttctg cgctaatctg
     9001 taatccttta cgattaagct tttctattaa actacgcatt tctttcacac gtcgctccat
     9061 atgatgtata ggattgtgtt tataaatgtg attgaaattg tcatctaaaa tactcagttt
     9121 agtgcttatt tcctttagtg ctgacgaata aatatgatct aactctacga aacctaataa
     9181 cgtatcaaat gcttcatcac cattttcaaa tttacttaag ctatttttaa aatcatgtcg
     9241 caaatcctct aaatatagtg atggttttcg atctacatac atttttatac taacctccga
     9301 tatataatca tctttattgt acctaacatt ttattaagat aatactaata cactatcgaa
     9361 ctttgggctg atactgaaac agcacaaaga aactcaaaca attcgaatta tgtatcaaaa
     9421 ccttcaatta caggaagtga ttttaaaatg atttaacgca aaaaaacacc tgttaccgtt
     9481 atataggtac aagtgcttaa ttgatagaga tgttatacgt ctttaaatga ttccacaact
     9541 tttggatgtg gaccatccat aagcggttct ctttgtcgaa cgccaccact ttggttgcca
     9601 attgattcgc tatcaaagta cgatttatct tgatttgatt gttcttgaat atgttcttca
     9661 ttatcagttg ttgcatattc actatccacc tctgtttttt ccattgttgc tgtatggaat
     9721 tgtacgaagt tctcttcttc taatgctttg atttcttctt tcgataacgc tcgataccaa
     9781 tctttcgctt ttttcgccgc aataggaaca acatcttttt caagatatcc ttcttttaac
     9841 attgcattcg caatttctat cgctttttgc cgtttaatta cttcaaattc tttccatttt
     9901 tcggggtaac ctttcattgt aaagggcatt tccttaacct ccaatatgtt ataattcatg
     9961 ttatatacca ccataattat aaaatgaaac atattaaaca cattttttta gactcccgtc
    10021 ataataactt cagacaaacg ttagtctgac ctgataaata tttaatttta aacgttcttg
    10081 tctctctcac gaaaaccatt gtgttgaata ttcatcattg ctgattgaat ataattatac
    10141 tgtggtaaat ctggtaatat ctttatttct aattctgtat ttaattcgaa atgcttagcg
    10201 atgttttcaa atattgctaa atactcgccc attaattgtt catttattgt aagtctatct
    10261 tcattagcca tggctctatt taacataaag ctaatttctt ctaatgcgaa taagctagga
    10321 taataatttt gaatcaatgt cttatcacta aataattcac cattagctgc attataaact
    10381 tgcgtcatgt tatttaattt cacagatagg ttcatagccg tgtttttctg atacacatca
    10441 tctttatatt gattttcaga aaataaataa tgaaagagcg ttgcttcttt acgaacaact
    10501 tcagccatta cattaggaag caatgcggat gcggtacgtt gtccaaggac aaataaacct
    10561 atgattgcaa tcacaatacc cattgcaacg tcaataactc ttggaaacgc aatgttaatt
    10621 gttaaattct gtgatgctaa tccgttcatt aaaataactt gtattgtaat aaaaactact
    10681 gcaatcgcat aatttgctcc caccaatgct tcagtaaaca atgctgcaat gcccattaaa
    10741 attactgcaa caggtgttgg tattgaaaac aacaatatga ctgaaagtac taacacacct
    10801 aaaatagtac ctaaacctcg tgccatacct ctctcgattg catgtatagt tgatgttcct
    10861 agtaatattg tatgtgcaga taacggtatc cagtatgctt tttcaaaatc aaacattaac
    10921 gcaataaata tcgctatcat cataatcgct gtatatctca atgtatttct aaaaacaata
    10981 gagtctaatg ttaaattttg ataaatgcgt ttactatata aaggttttcg catgtctgct
    11041 tcatacgcaa tacgcgcttc atttgcatgc accatttcat caattttcaa tatatggttg
    11101 aataaatttt gaaattcctc tgttactgtc acttcttttc gccaatatct tacattttcc
    11161 tcactattat ctagttgtgc aatgatatga tccatcattt caattaactc atctggcaat
    11221 ggtcgaattt gtttagcgtt caactctaac agttcagaat aaatcccttg ggcagatgtg
    11281 tgtaataata ataatttttg gaaacgtcta cttaatttat cgttacttga agtagaagtg
    11341 attaataatt tatcagatgc tttaaaacta tccaccgctg tttttgctac ttgtaaaaaa
    11401 gcagatttat cattataagt gtgtaacaac ttagatatga gtttaaaatc attttgaatt
    11461 gcttgttctt cagctttgtt tttagaaaat acgatcgtga ttaacaccat catagtggca
    11521 agtataccgc ctactaaaat cgcaaagcct ctatataatg cttcttcggg agctataggt
    11581 aagttaatgg gtagactgaa tgtcacaatg aagaatgtcg atgacggtcc agctattttt
    11641 aaggcagtaa atatataaaa tggtataacc gtaacaatta ataatgtcat tccaaaaacg
    11701 agtggcgttt tggctgttag cgtaccaagc atcatacata ttgcaaacgc taaattacaa
    11761 attattacag ttcgcagctt agatcgcgac ggacctttaa aaacataaat atgggctagt
    11821 gttccggttg caactaataa tccaaattgg aaattaccac ataagtaacc gattattgca
    11881 ggaataatca ttaacagtcc ctgtcttaca cctttataaa agtctaagtt aagtcgattg
    11941 atttttatga gtgatgtcaa aaagatgtca tttcgacttc tcctttcctt gtcaaaatat
    12001 ttccataatc tttttattag catagttaaa atgaatttgt tgctataa
//
LOCUS       DAMQWL010000076        11971 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.076, whole genome shotgun sequence.
ACCESSION   DAMQWL010000076 DAMQWL010000000
VERSION     DAMQWL010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 11971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11971
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.076"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            455..3160
                     /gene="acnA"
                     /locus_tag="PF788_001854"
     CDS             455..3160
                     /gene="acnA"
                     /locus_tag="PF788_001854"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HDG6304113.1"
                     /translation="MAANFKEQSKKHFDLNGQSYTYYDLKAVEEQGITKVSNLPYSIR
                     VLLESLLRQEDDFVITDDHIKALSQFGKDGNEGEVPFKPSRVILQDFTGVPAVVDLAS
                     LRKAMDDVGGDITKINPEVPVDLVIDHSVQVDSYANPEALERNMKLEFERNYERYQFL
                     NWATKAFDNYNAVPPATGIVHQVNLEYLASVVHVRDVDGEKTAFPDTLVGTDSHTTMI
                     NGIGVLGWGVGGIEAEAGMLGQPSYFPIPEVIGVRLVNSLPQGATATDLALRVTQELR
                     KKGVVGKFVEFFGPGVQHLPLADRATIANMAPEYGATCGFFPVDDESLKYMKLTGRSD
                     EHIALVKEYLKQNHMFFDVEKEDPNYTDVIELDLSTVEASLSGPKRPQDLIFLSDMKS
                     SFENSVTAPAGNQGHGLDKSEFDKKAEINFKDGSKATMKTGDIAIAAITSCTNTSNPY
                     VMLGAGLVAKKAVEKGLKVPEYVKTSLAPGSKVVTGYLRDAGLQPYLDDLGFNLVGYG
                     CTTCIGNSGPLLPEIEKAIADEDLLVTSVLSGNRNFEGRIHPLVKANYLASPQLVVAY
                     ALAGTVDIDLQNEPIGKGNDGEDVYLKDIWPSIKEVSDTVDSVVTPELFIEEYNNVYN
                     NNELWNEIDVTDQPLYDFDPNSTYIQNPSFFQGLSKEPGTIVPLNGLRVMGKFGDSVT
                     TDHISPAGAIGKDTPAGKYLQDHQVPIREFNSYGSRRGNHEVMVRGTFANIRIKNQLA
                     PGTEGGFTTYWPTNEVMPIFDAAMKYKEDGTGLVVLAGNDYGMGSSRDWAAKGTNLLG
                     VKTVIAQSYERIHRSNLVMMGVLPLEFKKGESADSLGLDGTEEISVNIDENVQPHDYV
                     KVTAKKQDGDLVEFDAMVRFDSLVEMDYYRHGGILQMVLRNKLAQ"
     gene            3340..3807
                     /locus_tag="PF788_001855"
     CDS             3340..3807
                     /locus_tag="PF788_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDG6304114.1"
                     /translation="MIYSITEIEARYAETDKMGVIYHGNYATWFEVARLDYISKLGFS
                     YADMEKQGIISPVTDLNVNYKKSIFYPEKVKVKTWVEKYSRLRSVYKYEIFNEKGELA
                     TTGSTELICIKEDTFKPIRLDRYFPDWHEAYSKVQTLNNEGKTVEIMDGIDSL"
     gene            complement(4014..4310)
                     /locus_tag="PF788_001856"
     CDS             complement(4014..4310)
                     /locus_tag="PF788_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesB/YadR/YfhF family protein"
                     /protein_id="HDG6304115.1"
                     /translation="MQIELTDAAVTWFKNELELPENNKVLVFFVRYGGEFQLKQGFSP
                     AFTVEPKEDVDIGYEQQYDDLNVVVAEKDLWYFEDDHIIVNVVDHEDEISYSTK"
     gene            complement(4686..5294)
                     /gene="plsY"
                     /locus_tag="PF788_001857"
     CDS             complement(4686..5294)
                     /gene="plsY"
                     /locus_tag="PF788_001857"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDG6304116.1"
                     /translation="MMIIVMLLLSYLIGAFPSGFVIGKLFFKKDIRQFGSGNTGATNS
                     FRVLGRPAGFLVTFLDIFKGFITVFFPLWLQVHADGPISTFFTNGLIVGLFAILGHVY
                     PVYLKFQGGKAVATSAGVVLGVNPILLLILAIIFFIVLKIFKYVSLASIVAAICCVIG
                     SLIIQDYILLVVSFLVSIILIIRHRSNIARIFRGEEPKIKWM"
     gene            5500..7491
                     /gene="parE"
                     /locus_tag="PF788_001858"
     CDS             5500..7491
                     /gene="parE"
                     /locus_tag="PF788_001858"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDG6304117.1"
                     /translation="MNKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEI
                     VDNSVDEVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGG
                     KFGQGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGK
                     TKKTGTKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH
                     YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVR
                     TKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELL
                     QFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKA
                     REDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAIL
                     PLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDG
                     AHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQK
                     ELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQ
                     PRREWIEKHVEFGMQEDQSILDNSEVQVLENDQFDEEEI"
     gene            7491..9893
                     /gene="parC"
                     /locus_tag="PF788_001859"
     CDS             7491..9893
                     /gene="parC"
                     /locus_tag="PF788_001859"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDG6304118.1"
                     /translation="MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRR
                     ILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEM
                     HGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF
                     PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGG
                     IIQGIDGIKKAYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDEL
                     RADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAIS
                     DGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIEL
                     IRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQL
                     RHILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMT
                     RHGYIKRTSIRSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKL
                     ADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKT
                     TRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVK
                     SINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKN
                     PHRIVAAHVVTGEHSQYTLYSKSNEEHGLINDIHKSEQYTNGSFIVDTDDFGEVIDMY
                     IS"
     gene            10143..11603
                     /locus_tag="PF788_001860"
     CDS             10143..11603
                     /locus_tag="PF788_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDG6304119.1"
                     /translation="MKDFDSLIPGWFKEFVHVGTDLIWSQYLIGLLLTAGFFFTISSK
                     FVQLRMLPEMFRALVERPETLEDGKKGISPFQAFAISAGSRVGTGNIAGVATAIVLGG
                     PGAVFWMWVIAFIGAASAFIEATLAQVYKVHDKDGGFRGGPAYYITKGLNQKWLGIVF
                     AILITITFAFVFNTVQSNTIAESLNTQYNISPVITGIILAIVTAIIIFGGVRSIATLS
                     SLIVPIMAIIYIGMVLVILLFNLDQIVPMIGTIIKSAFGIEQVTGGAVGAAVLQGIKR
                     GLFSNEAGMGSAPNAAATAAVPHPVKQGLIQSLGVFFDTMLVCTATAIMILLYSGLKF
                     GDNAPQGVAVTQSALNEHLGSAGGIFLTIAVTLFAFSSVVGNYYYGQSNIEFLSTNRV
                     ILFIFRCLVVVLVFVGAVVKTETVWNTADLFMGLMAIVNIISIIGLSNVAFALMKDYQ
                     KQKKEGKNPVFKPENLEINLFGISAWGANKYKNSDK"
BASE COUNT         4185 a         1716 c         2280 g         3790 t
ORIGIN      
        1 acagaagctg acgaaaagtc agcttacaat aatgtgcaag ttggggatgg gccccaacaa
       61 agagaaattg gattcccaat ttctacagac aatgcaagtt ggggtgggac gacgaaataa
      121 attttgcgaa aatatcattt ctgtcccact cccatcaaaa gaatgacatt gaaaaaaata
      181 ttaaagtttg gtgccataat tttctttctg ctcaatgaaa taatacgttt aaaaattgaa
      241 ttgaatcatt cgcgaaattg ataattattc tcaattaata aaaaatactt attacacctt
      301 acctgtatga taagttttgc ttatatactc tgattaaaaa gtcaaaacct aaattaagcg
      361 ttttctaagc atgatgagtt gtttatcaat aaatataata atacaattta atcaaggcat
      421 ataaatataa aaatgtatca agggggatca ttaaatggct gcaaatttta aagagcaatc
      481 aaaaaaacat tttgacttga atggccaaag ttatacttac tatgatttaa aagctgtaga
      541 agagcaaggt attactaaag tttccaattt accttattca attcgtgttt tgttagaatc
      601 tttacttcgt caagaagatg attttgtaat tacagacgat catattaaag ctttaagtca
      661 gtttggaaaa gatggaaatg aaggcgaggt gccatttaaa ccttctcgtg ttattttaca
      721 agatttcaca ggtgtaccag ccgtagttga tttagcttct ttacgtaaag caatggatga
      781 cgttggggga gatattacta aaattaatcc agaagtaccg gtggatttag ttattgacca
      841 ctcagttcaa gtggatagct atgcaaatcc agaagctctt gaacgtaata tgaaattaga
      901 atttgaacgt aactatgaac gttatcagtt tttaaattgg gcaacgaaag catttgataa
      961 ttacaatgca gttcctcctg caactggaat agttcaccaa gttaacttag aatatttagc
     1021 aagtgttgta catgttcgtg atgtagatgg tgaaaaaact gcatttccag atacattagt
     1081 tggtactgat tcacatacaa caatgataaa tggtattggc gtactaggat ggggtgttgg
     1141 tggtattgaa gctgaagctg gaatgcttgg acaaccttct tatttcccaa ttccagaggt
     1201 tattggtgta cgactagtaa attcattacc acaaggcgca acagcaactg atttagcgtt
     1261 aagagtaact caagagctac gtaaaaaagg tgttgttggt aaatttgtgg agttctttgg
     1321 tccaggtgta caacatttac cactagcaga ccgtgctaca attgcaaaca tggcaccaga
     1381 gtatggagca acttgcggat tcttcccagt tgatgatgaa tctcttaaat atatgaagtt
     1441 aactggtaga tcagacgaac atatcgcgct agtaaaagaa tatttgaaac aaaaccatat
     1501 gttctttgat gttgagaaag aagatcctaa ttatacagat gttatcgaat tggatttatc
     1561 aacagttgaa gcatcgcttt caggaccaaa acgtcctcaa gatttaattt tcttaagtga
     1621 tatgaaatca tcatttgaaa attctgtaac agctccagca ggcaaccaag gacacggttt
     1681 agataaaagt gaatttgata agaaagctga aattaacttt aaagatggat caaaagctac
     1741 aatgaaaaca ggtgatattg caatagcagc aattacatca tgtacaaata catctaaccc
     1801 ttatgtaatg ttaggtgcag gtttagttgc taaaaaagca gttgaaaaag gcttgaaagt
     1861 tcctgaatac gttaaaactt ctctagcacc aggatcaaaa gttgttaccg gatatttaag
     1921 agatgctggc ttacaacctt atttagatga tttaggcttc aacttggttg gttatggatg
     1981 tacaacttgt atcggtaatt caggtccttt attaccagaa attgaaaaag cgattgctga
     2041 tgaggaccta ttagtgacat ctgtattatc tggtaaccgt aactttgaag gtcgtatcca
     2101 tcctcttgtt aaagccaatt acctagcttc accacagtta gttgttgctt atgcattagc
     2161 tggaacggtt gatattgatt tacaaaatga acctattggt aaaggtaatg acggtgaaga
     2221 tgtatatttg aaagatattt ggccatcaat taaagaagtt tcagataccg ttgatagtgt
     2281 tgtaacacct gaattattta ttgaagaata taataacgta tacaataaca acgaattatg
     2341 gaatgagatt gatgtaactg atcaacctct atatgacttt gatcctaatt caacatacat
     2401 tcaaaatcca tcattcttcc aaggattatc taaagaaccg ggtacgattg ttccattaaa
     2461 tggtttacgt gttatgggta aattcggtga ttctgtgaca actgaccaca tctctccagc
     2521 aggtgcaatt ggtaaagata cgccagctgg taaatattta caagatcatc aagtgcctat
     2581 tcgtgaattt aattcatatg gttcaagacg tggtaatcac gaagtaatgg ttcgaggtac
     2641 gtttgctaat atacgtatta aaaaccaatt agcgccaggt actgaaggtg gttttacaac
     2701 ttattggcca acaaatgaag taatgcctat ctttgatgct gcaatgaaat ataaagaaga
     2761 tggtacaggt ttagttgtat tagctggtaa cgattatggt atgggttcat ctcgtgactg
     2821 ggcagcaaaa ggtacaaact tattaggtgt taaaacagtt attgcacaaa gttatgaacg
     2881 tatccatcgt tcaaatttag ttatgatggg tgtattacca ttagagttta aaaaaggtga
     2941 atcagctgat tctcttggtc tagatggtac agaagaaatt tctgttaata ttgatgaaaa
     3001 tgttcaacca catgactacg tcaaagttac tgctaagaag caagatggtg atttggtaga
     3061 atttgacgct atggttcgtt ttgactcact tgttgaaatg gattactatc gtcacggtgg
     3121 aattttacaa atggttttaa gaaataaatt agcgcaataa aaaatagata tcacagtaaa
     3181 attttaatcg gtatttgagg cactttgata gtgctcaaaa atacttctat aaactttatg
     3241 atataatagg tcggttcaaa acctttgtgt tcttggccgg cctcttcttg tattttatgt
     3301 tagaatgaga tataaagtta aactgaaaga aggcttaaaa tgatatatag tattacagaa
     3361 atagaagcgc gttatgctga aactgataag atgggtgtaa tttatcacgg gaattatgca
     3421 acttggtttg aagttgcgcg gttggattat atatcgaagt taggttttag ttatgctgat
     3481 atggaaaaac aaggaatcat ttcacctgtg actgacctca atgtcaatta taaaaagtct
     3541 attttttatc cagaaaaagt taaagttaaa acttgggttg aaaaatattc gagattacgt
     3601 tcagtgtata aatatgagat ttttaatgaa aaaggtgaac ttgcaactac aggttccaca
     3661 gaattgattt gcattaaaga agatactttt aagcctatac ggttggatcg ttatttccca
     3721 gattggcatg aagcttatag taaagtgcaa acgctcaata atgaagggaa aacagtagag
     3781 ataatggatg gtattgattc tttataagtt actgtaaatg tttggagagg caatattaac
     3841 aattaatcta taaaaaatag ccaatacgtt aacattaatg taattagcgt gaagataagc
     3901 taatatatag caaaaacgaa cttgttcata caacatcaga tgtgctaaac caaagtacaa
     3961 cttccgaggt tcaggacaca tcagaatgtg taaacaagtt cgttttattt tagttatttt
     4021 gtggaataag aaatttcatc ttcgtgatca actacattta caataatgtg gtcatcttca
     4081 aagtaccaca aatctttttc cgctacgaca acatttaaat cgtcatattg ttgttcatag
     4141 ccaatatcaa catcttcctt tggttcaact gtaaaagcag gactaaatcc ttgcttgagt
     4201 tggaattcgc caccatatct tacaaaaaac acgagcactt tattattttc aggcaactca
     4261 agttcatttt taaaccaagt tactgctgca tcagtaagtt ctatttgcat aacaatgacc
     4321 tcctatattt attacagaat gggagtgggc caacttgtat tatttgtgga atttcttatc
     4381 gaaattctct gtgttggagc ccaccccaac ctgctcatta ttgtaagctg aatttccata
     4441 agcttctatg ttgggacccc cgaccagaat tgaaaaaacc tagttataag cgcattttgt
     4501 tcggttaact acagctaata taacattgtg gagcctatga cattgattta tgtctcggtc
     4561 tcaaatgttc ttgtaaaaaa actaagtata gttgaatttt aagttaaaaa aattgttttt
     4621 gcaaaaataa aataatccat caactgcaaa aaaatatgca atgatggact aatgtcaaaa
     4681 aattgttaca tccattttat tttaggttct tcgcctctaa aaatccttgc gatattagag
     4741 cgatgtctaa ttatcaatat gattgaaact aagaaactaa cgactaataa aatatagtct
     4801 tgaatgataa gcgagccaat cacacagcaa attgctgcaa cgatacttgc taaagaaaca
     4861 tatttaaaaa tcttcaatac aataaagaag ataattgcaa gtattagtaa aagtatcgga
     4921 ttgactccca agacgacacc tgcactagtt gcaacagctt tgccaccttg gaattttaaa
     4981 taaacaggat aaacgtgtcc aagtatagcg aataagccaa caattaaacc atttgtaaaa
     5041 aaagtactaa tagggccatc tgcgtgaact tgtaaccata aagggaagaa aacagttatg
     5101 aaccctttga aaatatctag aaatgttacc aagaatcctg caggacgacc taatactcta
     5161 aagctattag tagcgccagt attaccacta ccaaattgtc taatatcttt tttgaaaaat
     5221 aattttccaa ttacgaatcc acttgggaaa gcgccgataa gataacttag tagtaacatg
     5281 acgattatca tcataaatat tacacatcct ttaatatctt aggactattt tatcatattc
     5341 atttaaatta cggctaaaaa ttttaaaaac ggggattaat atatggaatt aagctatgaa
     5401 agttaattga tacttgcatt ttacgctgat ttatataaga ataactattg tatagtttta
     5461 aaaacgaacg tacgtttgca ggaggcgaaa tcattggcaa tgaataaaca aaataattat
     5521 tcagatgatt caatacaggt tttagagggg ttagaagcag ttcgtaaaag acctggtatg
     5581 tatattggat caactgataa acggggatta catcatctag tatatgaaat tgtcgataac
     5641 tccgtcgatg aagtattgaa tggttacggt aacgaaatag atgtaacaat taataaagat
     5701 ggtagtattt ctatagaaga taatggacgt ggtatgccaa caggtataca taaatcaggt
     5761 aaaccgacag tcgaagttat ctttactgtt ttacatgcag gaggtaaatt tggacaaggc
     5821 ggctataaaa cttcaggtgg tcttcacggt gttggtgctt cagttgtaaa tgcattgagt
     5881 gaatggcttg aagttgaaat ccatcgagat ggtaatatat atcatcaaag ttttaaaaac
     5941 ggtggttcgc catcttctgg tttagtgaaa aaaggtaaaa ctaagaaaac aggtaccaaa
     6001 gtaacattta aacctgatga cacaattttt aaagcatcta catcatttaa ttttgatgtt
     6061 ttaagtgaac gactacaaga gtctgcgttc ttattgaaaa atttaaaaat aacgcttaat
     6121 gatttacgca gtggtaaaga gcgtcaagag cattaccatt atgaagaagg aatcaaagag
     6181 tttgttagtt atgtcaatga aggaaaagaa gttttgcatg acgtggctac attttcaggt
     6241 gaagcaaatg gtatagaggt agacgtagct ttccaatata atgatcaata ttcagaaagt
     6301 attttaagtt ttgtaaataa tgtacgtact aaagatggtg gtacacatga agttggtttt
     6361 aaaacagcaa tgacacgtgt atttaatgat tatgcacgtc gtattaatga acttaaaaca
     6421 aaagataaaa acttagatgg taatgatatt cgtgaaggtt taacagctgt tgtgtctgtt
     6481 cgtattccag aagaattatt gcaatttgaa ggacaaacga aatctaaatt gggtacttct
     6541 gaagctagaa gtgctgttga ttcagttgtt gcagacaaat tgccattcta tttagaagaa
     6601 aaaggacaat tgtctaaatc acttgtgaaa aaagcgatta aagcacaaca agcaagggaa
     6661 gctgcacgta aagctcgtga agatgctcgt tcaggtaaga aaaacaagcg taaagacact
     6721 ttgctatctg gtaaattaac acctgcacaa agtaaaaaca ctgaaaaaaa tgaattgtat
     6781 ttagtcgaag gtgattctgc gggaggttca gcaaaacttg gacgagaccg caaattccaa
     6841 gcgatattac cattacgtgg taaggtaatt aatacagaga aagcacgtct agaagatatt
     6901 tttaaaaatg aagaaattaa tacaattatc cacacaatcg gggcaggcgt tggtactgac
     6961 tttaaaattg aagatagtaa ttataatcgt gtaattatta tgactgatgc tgatactgat
     7021 ggtgcgcata ttcaagtgct attgttaaca ttcttcttca aatatatgaa accgcttgtt
     7081 caagcaggtc gtgtatttat tgctttacct ccactttata aattggaaaa aggtaaaggc
     7141 aaaacaaagc gagttgaata cgcttggaca gacgaagagc ttaataaatt gcaaaaagaa
     7201 cttggtaaag gcttcacgtt acaacgttac aaaggtttgg gtgaaatgaa ccctgaacaa
     7261 ttatgggaaa cgacgatgaa cccagaaaca cgaactttaa ttcgtgtaca agttgaagat
     7321 gaagtgcgtt catctaaacg tgtaacaaca ttaatgggtg acaaagtaca acctagacgt
     7381 gaatggattg aaaagcatgt tgagtttggt atgcaagagg accaaagtat tttagataat
     7441 tctgaagtac aagtgcttga aaatgatcaa tttgatgagg aggaaatcta gtgagtgaaa
     7501 taattcaaga tttatcactt gaagatgttt taggtgatcg ctttggaaga tatagtaaat
     7561 atattattca agagcgtgca ttgccagatg ttcgtgatgg tttaaaacca gtacaacgtc
     7621 gtattttata tgcaatgtat tcaagtggta atacacacga taaaaatttc cgtaaaagtg
     7681 cgaaaacagt cggtgatgtt attggtcaat atcatccaca tggagacttc tcagtgtacg
     7741 aagcaatggt ccgtttaagt caagactgga agttacgaca tgtcttaata gaaatgcatg
     7801 gtaataatgg tagtatcgat aatgatccgc cagcggcaat gcgttacact gaagctaagt
     7861 taagcttact agctgaagag ttattacgtg atattaataa agagacagtt tctttcattc
     7921 caaactatga tgatacgaca ctcgaaccaa tggtattgcc atcaagattt cctaacttac
     7981 tagtgaatgg ttctacaggt atatctgcag gttacgcgac agatatacca ccacataatt
     8041 tagctgaagt gattcaagca acacttaaat atattgataa tccggatatt acagtcaatc
     8101 aattaatgaa atatattaaa ggtcctgatt ttccaactgg tggtattatt caaggtattg
     8161 atggtattaa aaaagcttat gaatcaggta aaggtagaat tatagttcgt tctaaagttg
     8221 aagaagaaac tttacgcaat ggacgtaaac agttaattat tactgaaatt ccatatgaag
     8281 tgaacaaaag tagcttagta aaacgtatcg atgaattacg tgctgacaaa aaagtcgatg
     8341 gtatcgttga agtacgtgat gaaactgata gaactggttt acgaatagca attgaattga
     8401 aaaaagatgt gaacagtgaa tcaatcaaaa attatcttta taaaaactct gatttacaga
     8461 tttcatataa tttcaacatg gtcgctatta gtgatggtcg tccaaaattg atgggtattc
     8521 gtcaaattat agatagttat ttgaatcacc aaattgaggt tgttgcaaat agaacgaagt
     8581 ttgaattaga taatgcagaa aaacgtatgc atatcgttga aggtttgatt aaagcgttgt
     8641 caattttaga taaagtaatc gaattgattc gtagctctaa aaacaagcgt gacgctaaag
     8701 aaaaccttat cgaagtatac gagttcacag aagaacaggc tgaagcaatt gtaatgttac
     8761 agttatatcg tttaacaaat actgacatag ttgcgcttga aggtgaacat aaagaacttg
     8821 aagcattaat caaacaatta cgtcatattc ttgataacca tgatgcatta ttgaatgtca
     8881 taaaagaaga attgaatgaa attaaaaaga aattcaaatc tgaacgactg tctttaattg
     8941 aagcagaaat tgaagaaatt aaaattgaca aagaagttat ggtgcctagt gaagaagtta
     9001 ttttaagtat gacacgtcat ggatatatta aacgtacttc tattcgtagc tttaatgcta
     9061 gcggtgttga agatattggt ttaaaagatg gtgacagttt acttaaacat caagaagtaa
     9121 atacgcaaga taccgtacta gtatttacaa ataaaggtcg ttatctattt ataccggttc
     9181 ataaattagc agatattcgt tggaaagaat tgggacaaca tgtatcacaa atagttccta
     9241 tcgaagaaga tgaagtggtt attaatgtct ttaatgaaaa ggactttaat acagatgcat
     9301 tttatgtttt tgcgactcaa aatggcatga ttaagaaaag tacagtgcct ctatttaaaa
     9361 caacgcgttt taataaacct ttaattgcta ctaaagttaa agaaaatgat gatttgatta
     9421 gtgttatgcg ctttgaaaaa gatcaattaa ttaccgtcat tactaataaa ggtatgtcat
     9481 taacgtataa tacaagtgaa ctatcagata ccggattaag ggcagctggt gttaaatcaa
     9541 taaatcttaa agctgaagat ttcgttgtta tgacagaagg tgtttctgaa aatgatacta
     9601 tattgatggc cacacaacgc ggctcgttaa aacgtattag ttttaaaatc ttacaagttg
     9661 ctaaaagagc acaacgtgga ataactttat taaaagaatt aaagaaaaat ccacatcgta
     9721 ttgtagctgc acatgtagtg acaggtgaac atagtcaata tacattatat tcaaaatcaa
     9781 atgaagaaca tggtttaatt aatgatattc ataaatctga acaatataca aatggctcat
     9841 tcattgtaga tacagatgat tttggtgaag taatagacat gtatattagc taaaaactat
     9901 atgcaatcac gaaattaaat gataaaatac agtaatgtta aattttgact aaattcaagg
     9961 gatttatatt aaatgctgac caagtactta tcgttaaatt agcgatatac tttgaccaaa
    10021 ctaatataaa tctcttgtat tgtataagaa atgatgatgt atctctatat ttactgaagg
    10081 ttcaattcgg tctaatttta tagaaggtac atgattcatg tagaggatgc gaggggttta
    10141 ttttgaaaga tttcgatagt ttaatacctg gatggtttaa agaatttgtc catgttggta
    10201 ccgatttaat atggtctcaa tatttaattg gtctattatt gacagctgga ttcttcttta
    10261 cgattagttc taaattcgtt caattacgaa tgttacctga aatgtttaga gctttagtag
    10321 aacgtccaga aactttagaa gatggtaaga agggtatttc gccattccaa gcatttgcga
    10381 ttagtgctgg ttcgagagtt ggtactggta atattgctgg tgttgcgact gcgattgttt
    10441 taggcggtcc aggtgcagta ttttggatgt gggttattgc atttataggt gcagcgagtg
    10501 catttataga agcgactttg gctcaggttt ataaagtaca tgataaagat ggtggattcc
    10561 gtggtggtcc agcttactat attactaaag gtttaaatca aaaatggcta ggtatcgtat
    10621 ttgcgatttt aattacaatt acatttgcat ttgtatttaa cacagtgcaa tctaatacaa
    10681 ttgcggagtc gttaaatacg caatataata ttagtccagt aatcacaggt attattttag
    10741 caatcgtaac agctattatt atatttggtg gtgtacgtag tattgctacg ttatcttcgt
    10801 taattgtacc gattatggct atcatttaca ttggtatggt tttagtaata ttgctattta
    10861 atttagatca aattgttcct atgataggta cgattattaa aagtgcattt ggtatcgaac
    10921 aagtaactgg tggcgctgta ggtgctgcgg ttcttcaagg tatcaaacgt ggtttattct
    10981 ctaacgaagc tggtatgggt tctgcgccga atgcagcggc aactgctgcc gtaccacacc
    11041 ctgttaagca aggtttaatc caatcattag gtgtgttctt tgatacaatg ttggtttgta
    11101 cagcaactgc aatcatgatt ttactatatt caggactgaa atttggtgat aacgcacctc
    11161 aaggtgttgc agttactcaa tcagcactta atgagcattt aggttctgct ggaggtattt
    11221 tcttaacaat agcagttaca ctgtttgcat tttcatctgt tgtaggtaat tactattacg
    11281 gtcaatctaa tattgaattt ttatcaacaa accgtgtaat attatttatc tttagatgtc
    11341 ttgttgtagt acttgtcttt gtcggtgcag ttgtaaaaac agaaacagta tggaatacgg
    11401 cagacttatt tatgggctta atggcaattg taaacattat ttccattata ggactgtcca
    11461 atgtagcttt tgcattgatg aaagattatc aaaagcagaa aaaagaaggc aagaaccctg
    11521 tctttaaacc tgaaaactta gaaattaact tatttggaat tagtgcttgg ggcgctaaca
    11581 aatataagaa ctctgataaa taaatatttt taatgtaacg attcattata taaaaatcaa
    11641 ataaaccctg aggttttcaa attaaagcga aaatctcagg gttttaaatt tgtactcaat
    11701 tatcatctgt atcattacac tagttaatct aagatttgat tatatattaa tatagtaagg
    11761 ttgagattta tttcctccat tggtgtgcaa agactatacc attgataaga catattgttg
    11821 gatagatgaa tataaatttg ttttagcttt gcacaattta atagtacgtt ttagtttgta
    11881 ttgagtatta attcagataa tatataaata aatagaatta tttgtaaata tgggagtcag
    11941 atttttttat tatagttatt ccactttgag a
//
LOCUS       DAMQWL010000077        11830 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.077, whole genome shotgun sequence.
ACCESSION   DAMQWL010000077 DAMQWL010000000
VERSION     DAMQWL010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 11830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11830
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.077"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            269..2080
                     /locus_tag="PF788_001861"
     CDS             269..2080
                     /locus_tag="PF788_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDG6304120.1"
                     /translation="MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSG
                     GFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFT
                     LIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLL
                     FPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLL
                     GCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYII
                     SFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIP
                     VYVYIIEILLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSI
                     VVLSGQFDALGKQHEAEKKEKKTEFKTTKKKVVKKDKQEDKQTANSKEDIKKSSPLLI
                     GDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNG
                     AFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASA
                     GHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK"
     gene            2441..3208
                     /locus_tag="PF788_001862"
     CDS             2441..3208
                     /locus_tag="PF788_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDG6304121.1"
                     /translation="MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNSNDAQSYSY
                     TYTIDAQGNYHYTWTGNWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYT
                     NNSQTATNNYYTGGSGASYSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCT
                     YYVFDRVGGKIGSTWGNASNWANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGV
                     NSNGSVRVSEMNYGHGAGVVTSRTISANQAGSYNFIH"
     gene            3383..3871
                     /gene="crtO"
                     /locus_tag="PF788_001863"
     CDS             3383..3871
                     /gene="crtO"
                     /locus_tag="PF788_001863"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl-4,4'-diaponeurosporenoate
                     acyltransferase"
                     /protein_id="HDG6304122.1"
                     /translation="MKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKYIIFKSF
                     NFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAEL
                     IHWISILPVIIFNKGPRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRRGER
                     HD"
     gene            3864..5357
                     /locus_tag="PF788_001864"
     CDS             3864..5357
                     /locus_tag="PF788_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDG6304123.1"
                     /translation="MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRH
                     ESDGFGFDLGPSILTMPYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYE
                     GIKETGQHNAILSKQDIEELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNA
                     LINYDYVHTMQQAIDKRISNPYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLW
                     YVEGGIHHLANALEKLAREEGVTIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIIS
                     NMEVIPTYKYLIHLDTQRLNKLEREFEPASSGYVMHLGVACQYPQLAHHNFFFTENAY
                     LNYQQVFHEKVLPDDPTIYLVNTNKTDHTQAPVGYENIKVLPHIPYIQDQPFTTEDYA
                     KFRDKILDKLEKMGLTDLRKHIIYEDVWTPEDIEKNYRSNRGAIYGVVADKKKNKGFK
                     FPKESQYFENLYFVGGSVNPGGGMPMVTLSGQQVADKINAREAKNRK"
     gene            5363..6490
                     /gene="crtQ"
                     /locus_tag="PF788_001865"
     CDS             5363..6490
                     /gene="crtQ"
                     /locus_tag="PF788_001865"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,4'-diaponeurosporenoate glycosyltransferase"
                     /protein_id="HDG6304124.1"
                     /translation="MKWLSRILTVIVTMSMACGALIFNRRHQLKAKTLNFNHKALTII
                     IPARNEEKRIGHLLHSIIQQQVPVDVIVMNDGSTDETARVARSYGATVVDVVDDTDGK
                     WYGKSHACYQGVTHACTNRIAFVDADVTFLRKDAVETLINQYQLQGEKGLLSVQPYHI
                     TKRFYEGFSAIFNLMTVVGMNVFSTLDDGRTNQHAFGPVTLTNKEDYYATGGHKSANR
                     HIIEGFALGSAYTSQSLPVTVYEGFPFVAFRMYQEGFQSLQEGWTKHLSTGAGGTKPK
                     IMTAIVLWLFGSIASILGLCLSLKYRQMSVRKMVALYLSYTTQFIYLHRRVGQFSNLL
                     MVCHPLLFMFFTKIFIQSWKQTHRYGVVEWKGRQYSISKEQ"
     gene            6527..7390
                     /locus_tag="PF788_001866"
     CDS             6527..7390
                     /locus_tag="PF788_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene/squalene synthase family protein"
                     /protein_id="HDG6304125.1"
                     /translation="MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVC
                     RKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQ
                     SFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRL
                     GESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAI
                     AEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANYTLHERVFVDKRKKAKL
                     FHEINSKYHRI"
     gene            7402..8910
                     /locus_tag="PF788_001867"
     CDS             7402..8910
                     /locus_tag="PF788_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDG6304126.1"
                     /translation="MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKK
                     DGFTFDMGPTIVMMPDVYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDL
                     AELQQMLESIEPGSTHGFMSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAK
                     LKTLNHADQLIEHYIDNEKIQKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIK
                     GGMYGMAQGLAQLNKDLGVNIELNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTA
                     DFPSVAESLMPDFAPIKKYPPHKIADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDD
                     FRGNIEEIFEGRLSYDPSIYVYVPAVADKSLAPEGKTGIYVLMPTPELKTGSGIDWSD
                     EALTQQIKEIIYRKLATIEVFEDIKSHIVSETIFTPNDFEQTYHAKFGSAFGLMPTLA
                     QSNYYRPQNVSRDYKDLYFAGASTHPGAGVPIVLTSAKITVDEMIKDIERGV"
     gene            9337..10491
                     /locus_tag="PF788_001868"
     CDS             9337..10491
                     /locus_tag="PF788_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDG6304127.1"
                     /translation="MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQG
                     IIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGL
                     VAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID
                     KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILAS
                     ENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIY
                     ALNHYDDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQ
                     FLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYLYE"
     gene            10514..11512
                     /locus_tag="PF788_001869"
     CDS             10514..11512
                     /locus_tag="PF788_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDG6304128.1"
                     /translation="MTKIKIMSVRDEDMPYIKAWAEKHHVEVDITKEALTDDNVEGVA
                     GYDGLSLSQQIPLSEHVYKRLNELGIKQIAQRSAGFDTYDLELANKYNFIVSNVPSYS
                     PNSIAEFAVNQAINVVRHFNQIQTKVREHDFRWEPTILSKSIKDLKVAVIGTGRIGRV
                     VADIFANGYQSDVVAYDPFPNAKIATYVDYKDTIEEAVEGADIVTLHVPATKYNHYLF
                     NAELFKHFKKGAVFVNCARGSLVDTKALLDALDNGVIKGAALDTYEFERKLFPSDQRG
                     KTLNDPLLESLIDREDVILTPHIAFYTEAAVKNLIVDALDATLDVLQTGDTRLRVN"
     gene            complement(11602..11808)
                     /gene="copZ"
                     /locus_tag="PF788_001870"
     CDS             complement(11602..11808)
                     /gene="copZ"
                     /locus_tag="PF788_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone CopZ"
                     /protein_id="HDG6304129.1"
                     /translation="MSQEILNVEGMSCGHCKSAVESALNNIDGVTSADVNLENGQVSV
                     QYDDSKVAVSQMKDAIEDQGYDVV"
BASE COUNT         4078 a         1732 c         2303 g         3717 t
ORIGIN      
        1 tttttgtaaa aatataatga aaataacagt tattttgcta aaaattcaag aatctatgat
       61 aatctatgtt atgtagtaaa atcgacaaat ttatatgtgg tttgcagtaa tgaaatcaac
      121 tgtaataatt gttttctact taataaaaaa tttaaaacta tcttaattaa gggttaaatc
      181 aattaatgaa aatcagtgca atattttatt ttcaaaaata ttgtgatatg ctacaaaata
      241 gagaaaaata aatggggcgt ttattaacat ggatacaaaa gactttaaac gtttagaaaa
      301 aatgtattcc ccgcgatact tacctggatt agatggattg agggcattcg cagttatagg
      361 aatcattatt tatcacttga atgcacaatg gttaagtggg ggctttttag gagtagatac
      421 attcttcgtt atttcaggtt atttaataac aagtttgttg ataagtgagt attatcggac
      481 gcaaaaaatc gatttgctag agttttggaa gcgacgattg aaacgactca ttccggcagt
      541 gttattttta atctgtgtcg tgcttacgtt cacactgata tttaaaccgg aattgattat
      601 acaaatgaaa cgagatgcta ttgcagctat attctatgtt tcaaactggt ggtacatttc
      661 acagaatgta gattatttta accaatttgc tattgaacca ctcaaacatt tatggtcttt
      721 agccattgaa gaacaatttt acttgctttt cccattggtt atcacgttct tattacatag
      781 atttaaaccg agaaatatta ttcaaacgct atttattgta tcgttgattt ctttaggact
      841 tatgatagtg attcatttca tcactggaga taattcacgt gtgtattttg ggacagatac
      901 acgactgcaa actttattgc ttggttgtat attagcattt atttggcctc cgtttgcttt
      961 gaaaaaagat atttctaaaa agattgtcgt atcattagat attataggga tatctggttt
     1021 tgcggttcta atgactttgt tctttatagt tggagaccaa gatcaatgga tctataatgg
     1081 aggattttac attatatcat ttgcaacttt attcattatt gcaattgcgg tacatccttc
     1141 tagtttattt gctaaatttt taagtatgaa acctttacta attataggta aacgatcata
     1201 tagcttatac ttatggcatt atcctatcat tgtttttgtg aacagttatt acgtacaagg
     1261 acaaataccg gtatacgttt atattataga aattttgtta acagcgttaa tggctgaaat
     1321 ttcgtatcgc tttattgaaa cacctatacg taaaaaagga tttaaagctt ttgcattttt
     1381 acctaaaaag aaggggcaat ttgctagaac agtgttagtt atcctattat tggttccgtc
     1441 tatcgttgtg ctcagtggac agtttgatgc acttggcaaa caacatgaag ccgagaagaa
     1501 agagaagaag acggaattta aaacaacgaa gaaaaaagtc gttaaaaaag ataagcaaga
     1561 ggataagcag acagcgaata gcaaagagga tattaaaaag tcatcaccac tattaattgg
     1621 tgactcggtc atggtggata ttggtaatgt ctttactaag aaaataccaa atgcacaaat
     1681 tgatggtaaa gttggacggc aactcgttga tgctacacca attgtgaaat cgcaatataa
     1741 agactatgct aaaaaaggtc aaaaagttgt agtagagctt ggtacaaatg gggcatttac
     1801 gaaagatcaa ttaaatgaac tattggatag ttttggaaaa gcagacatat atttagtttc
     1861 tattagagta cctagagatt atgaaggtag aataaataaa ttaatttatg aggcagctga
     1921 aaagcgctct aatgtacatc tagtcgattg gtataaagct tctgcaggtc atccggaata
     1981 ctttgcatat gacggtattc acttagaata tgcaggtagt aaagcgctga ctgatttgat
     2041 tgtaaaaacg atggaaacac atgctacaaa taagaaataa tttgatgcac taaacttttg
     2101 aaatattaca ttacttctga tatttattat caaaaatgat gtatttcatt aaaagtttag
     2161 tgctttttta ttttcaaatc ccatagtaac ggtgcagaaa aagtgttgta aacattctaa
     2221 ttggtatatt acattcaatg aagctttatt aggaacagat tacattatga taacaaagcc
     2281 cgcaagacac ctaatctctg ttatagtttg ttttgtcgca aaactataaa agttataatt
     2341 gtttgcatac taaaaaaata aaaaatataa aatttaaaat aattgagtcg ctaatgacta
     2401 tatgtataga gtgttttgat tattgggagg atatttaatt atgaaaaaaa tcgttacagc
     2461 tacaatcgct acagcaggac ttgccactat cgcatttgca ggacatgatg cacaagccgc
     2521 agaacaaaat aacaatggat ataattctaa tgacgctcaa tcatacagct atacgtatac
     2581 aattgatgca caaggtaatt atcattacac ttggacagga aattggaatc caagtcaatt
     2641 aacgcaaaac aacacatact actacaacaa ctacaatact tatagttata acaatgcatc
     2701 ttacaataac tactataatc attcatatca atacaataac tatacaaaca atagtcaaac
     2761 agcaacaaat aactattata ctggtggttc aggtgcaagt tatagcacaa caagtaataa
     2821 tgttcatgtg actacaactg cagcgccatc ttcaaatggt cgttcaattt ctaatggtta
     2881 tgcatcagga agtaacttat atacttcagg acaatgtact tattatgtat ttgatcgtgt
     2941 tggtgggaaa attggttcaa catggggtaa cgcaagtaat tgggctaacg cagctgcatc
     3001 atctggctat acagtgaaca atacaccaaa agttggtgct atcatgcaaa caacacaagg
     3061 ctattacggt catgttgctt acgttgaagg cgttaacagc aacggttctg ttcgtgtttc
     3121 agaaatgaac tatggacatg gtgctggtgt ggttacgtct cgtacaattt cagcaaacca
     3181 agcaggttca tataatttca ttcattaatc aaatgtaaat caaatgacgt caatattctc
     3241 taacatgaga gtattggcgt ttttgtttta tataaatata aatgagagcg gtttattcac
     3301 tgatctttag ggaactaagt aataaagtga taatttatac tatgtcagta tgattgagag
     3361 tgattcaatt tagatgaaaa ccatgaaaaa atatattaaa acagcatttt tttgtagtat
     3421 gtattggtta attgttcaac taaatatagc aaatttaggt acaagaattc ctgataagta
     3481 ttttcgtcag aagtacataa tatttaaatc atttaacttt gagaagcatg gaaaattttg
     3541 gaacaaatgg ttttacgtaa gaaaatggaa acataagatt ttagatggtc atcagcttaa
     3601 tcaaaatata tatgatcagc gtcatttaat gacaatcaat actgatgaaa ttgaaaaaat
     3661 gattatagag acaaagaggg cagagttgat tcattggata tcgatacttc cagtcatcat
     3721 attcaataaa ggccctcgtt tagtaaagta tataaatatt ttctatgcaa tgatagctaa
     3781 tgttccaatc attattgtgc aacgctataa tcgaccgaga ttaacgcagt tactacgcat
     3841 attaaaacga agaggtgaac gtcatgacta aacatatcat cgttattggt ggtggcttag
     3901 gtgggatttc tgcagcaatt cgaatggcac aaagtggcta ttcggtctca ttatatgaac
     3961 aaaataatca tataggaggc aaagtgaatc gtcatgaatc agatggcttt ggctttgatt
     4021 taggtccatc tattttaacg atgccttata tttttgaaaa attattcgaa tatagcaaga
     4081 agcaaatgtc agactacgtt acaatcaagc gattgccaca tcaatggcgt agcttttttc
     4141 cagatggaac gactatcgat ttgtatgaag gtattaaaga aacaggtcag cataatgcga
     4201 tattgtcgaa acaggatata gaggaactgc aaaattattt gaattataca agacgaatcg
     4261 atcgtattac tgaaaaaggg tatttcaact atggtttaga tacactatct caaattatta
     4321 aatttcatgg gccattaaat gctcttatta attatgatta tgtacatact atgcaacagg
     4381 ccatagacaa gcgtatctcg aatccatact tgcgacaaat gttaggctat tttatcaaat
     4441 atgtaggttc ttcatcatac gatgcgccag ctgtattatc tatgttattc catatgcaac
     4501 aagagcaagg cctttggtat gtagaaggtg gaatccatca tttagccaat gccttggaaa
     4561 agctagcgcg tgaagaaggt gtcacaattc atacaggtgc acgtgtggac aatattaaaa
     4621 catatcaaag acgtgtgacg ggtgtcagat tagatacagg tgagtttgta aaggcagatt
     4681 atattatttc aaatatggaa gtcataccta cttataaata tttaattcac cttgatactc
     4741 aacgattaaa caaattagag agggaatttg agccggcaag ctcaggatat gtgatgcatt
     4801 taggtgttgc ttgccaatac ccgcaattag cacatcataa tttctttttt acggaaaatg
     4861 cttatctcaa ttatcaacaa gtttttcatg aaaaggtatt gccagatgat ccgaccattt
     4921 atctagtaaa tacgaataaa actgatcaca cacaagcgcc agtaggttat gaaaatatca
     4981 aagtcttacc acatattcca tatattcaag atcagccttt taccactgaa gattatgcga
     5041 agtttaggga taaaattttg gataaattag aaaaaatggg acttactgat ttaagaaaac
     5101 acattattta tgaagatgtt tggacaccgg aggatattga aaaaaattat cgttctaatc
     5161 gtggtgcaat atatggtgtt gtagcagata aaaagaaaaa caaaggattt aaatttccta
     5221 aagaaagtca gtattttgaa aacttgtact ttgtaggtgg atcagtaaat cctggtggtg
     5281 gcatgccaat ggttacatta agtgggcaac aagtcgcaga caaaataaac gcgcgagaag
     5341 cgaagaatag gaagtgatat ctatgaaatg gttatcacga atattaacag taatagtgac
     5401 catgtctatg gcgtgtggtg cattgatatt taatcgtaga catcagctaa aggcgaaaac
     5461 gctgaacttc aatcataaag cattaacaat tattattccg gctagaaacg aagaaaaaag
     5521 aataggtcat ttactacatt cgataataca acagcaagtt ccagtagatg tcattgttat
     5581 gaatgacgga tcgacagatg aaacagcacg tgtagcacgt tcatatggtg cgactgtagt
     5641 agatgttgtt gatgatactg acggcaaatg gtatgggaaa tcacatgctt gttatcaagg
     5701 tgtgacgcat gcatgtacga atcgcattgc ctttgtagat gctgatgtaa ctttcttaag
     5761 gaaagatgct gttgaaacgt tgattaatca gtatcaatta caaggtgaaa aaggattgtt
     5821 aagcgtacag ccttatcata taacaaagcg tttctacgaa gggttttcag cgatatttaa
     5881 tttaatgaca gtcgttggta tgaatgtatt ttctacctta gacgacggtc ggactaacca
     5941 gcatgcattt ggaccggtga cattaacaaa taaagaagat tattatgcaa ctggaggtca
     6001 taaaagtgca aaccgtcata ttattgaagg atttgcttta ggaagtgcat atacttcaca
     6061 atcattgccc gtaacagttt atgaagggtt tccatttgtt gcatttcgca tgtatcaaga
     6121 aggatttcag tcattacaag aaggatggac aaagcatttg tcaactgggg caggtggcac
     6181 aaagcctaag atcatgacag caattgtgtt gtggttgttt ggttctatag cgagtatttt
     6241 agggctatgt cttagtttaa aatatcgcca aatgtctgta agaaaaatgg tagcacttta
     6301 cttgagctat actacacaat ttatttatct gcatcgaagg gtcggccaat tttctaattt
     6361 attaatggta tgtcatccat tgttatttat gttttttact aaaattttca tccaatcttg
     6421 gaaacaaacg catcgttatg gtgtagttga atggaaaggt cgtcaatatt ctatatctaa
     6481 agaacaataa atcaaggtaa tggcatttca atataggagg actagtatga caatgatgga
     6541 tatgaatttt aaatattgtc ataaaatcat gaagaaacat tcaaaaagct tttcttacgc
     6601 ttttgacttg ttaccagaag atcaaagaaa agcggtttgg gcaatttatg ctgtgtgtcg
     6661 taaaattgat gacagtatag atgtttatgg cgatattcaa tttttaaatc aaataaaaga
     6721 agatatacaa tctattgaaa aatacccata tgaacatcat cactttcaaa gtgatcgtag
     6781 aatcatgatg gcgcttcagc atgttgcaca acataaaaat atcgcctttc aatcttttta
     6841 taatctcatt gatactgtat ataaagatca acattttaca atgtttgaaa cggacgctga
     6901 attattcgga tattgttatg gtgttgctgg tacagtaggt gaagtattga cgccgatttt
     6961 aagtgatcat gaaacacatc agacatacga tgtcgcaaga agacttggtg aatcgttgca
     7021 attgattaat atattaagag atgtcggtga agattttgac aatgaacgga tatattttag
     7081 taagcaacga ttaaagcaat atgaagttga tattgctgaa gtgtaccaaa atggtgttaa
     7141 taatcattat attgacttat gggaatatta tgcagctatc gcagaaaaag attttcaaga
     7201 tgttatggat caaatcaaag tatttagtat tgaagcacaa ccaatcatag aattagcagc
     7261 acgtatatat attgaaatac tggacgaagt gagacaggct aactatacat tacatgaacg
     7321 tgtttttgtg gataagagga aaaaggcaaa gttgtttcat gaaataaata gtaaatatca
     7381 tagaatatag gtggttgaat aatgaagatt gcagtaattg gtgcaggtgt cacaggatta
     7441 gcagcggcag cccgtattgc ttctcaaggt catgaagtga cgatatttga aaaaaataat
     7501 aatgtaggcg ggcgtatgaa tcaattaaag aaagacggct ttacatttga tatgggtccc
     7561 acaattgtca tgatgccaga tgtttataaa gatgttttta cagcgtgtgg taaaaattat
     7621 gaagattata ttgaattgag acaattacgt tatatttacg atgtgtattt tgaccacgat
     7681 gatcgtataa cggtgcctac agatttagct gaattacagc aaatgctaga aagtatagaa
     7741 cctggttcaa cgcatggttt tatgtccttt ttaacggatg tttataaaaa atatgaaatt
     7801 gcacgtcgct atttcttaga aagaacgtat cgcaaaccga gtgactttta taatatgacg
     7861 tcacttgtgc aaggtgctaa gttaaaaacg ttaaatcatg cagatcagct aattgaacat
     7921 tatattgata acgaaaagat acaaaagctt ttagcgtttc aaacgttata cataggaatt
     7981 gatccaaaac gaggcccgtc actatattca attattccta tgattgaaat gatgtttggt
     8041 gtgcatttta ttaaaggcgg tatgtatggc atggctcaag ggctagcgca attaaataaa
     8101 gacttaggcg ttaatattga actaaatgct gaaattgagc aaattattat tgatcctaaa
     8161 ttcaaacggg ccgatgcgat aaaagtgaat ggtgacataa gaaaatttga taaaatttta
     8221 tgtacggctg atttccctag tgttgcggaa tcattaatgc cagattttgc acctattaaa
     8281 aagtatccac cacataaaat tgcagactta gattactctt gttcagcatt tttaatgtat
     8341 atcggtatag atattgatgt gacagatcaa gtgagacttc ataatgttat tttttcagat
     8401 gactttagag gcaatattga agaaatattt gagggacgtt tatcatatga tccttctatt
     8461 tatgtgtatg taccagcggt cgctgataaa tcacttgcgc cagaaggcaa aactggtatt
     8521 tatgtgctaa tgccgacgcc ggaacttaaa acaggtagcg gaatcgattg gtcagatgaa
     8581 gctttgacgc aacaaataaa ggaaattatt tatcgtaaat tagcaacgat tgaagtattt
     8641 gaagatataa aatcgcatat tgtttcagaa acaatcttta cgccaaatga ttttgagcaa
     8701 acgtatcatg cgaaatttgg ttcggcattc ggtttaatgc caactttagc gcaaagtaat
     8761 tattatcgtc cacaaaatgt atcgcgagat tataaagatt tatattttgc aggtgcaagt
     8821 acgcatccag gtgcaggcgt tcctattgtc ttaacgagtg cgaaaataac tgtagatgaa
     8881 atgattaaag atattgagcg gggcgtataa gggagtagtc taagagaaag atgtgagaaa
     8941 agtataaggg gaacgtaaaa ggcatagtga aataagtatg tgcttaagaa gttttattta
     9001 acaatgaatg acgcctgtta aggttcacgt ttgaatacgt accttgatgg gcgttatact
     9061 ttatataagc atatctaact ggttgcgcat gcggatatgc atgacagtta aatcataacg
     9121 attgagtgca tattaatctg aaaattccta atattgacaa tgatattata cctacctaaa
     9181 atgaaaataa attcattcaa tacaacgtgt gtcataagtt ctgttgaaca taacggtgaa
     9241 tggcgatgtc attgtaacca tctaaatgag agtgatacaa gttgttagga ttatgatagt
     9301 cgcccaggct atgtttaatg atagaggagg aatttgatga tctctaacaa attagcaaat
     9361 atccctgata gttatttcgg gaaaacgatg ggacgtaaaa tcgaacatgg accattgcca
     9421 ttaattaata tggcagttgg aatccctgat gggcccacgc cacaaggtat tattgatcat
     9481 tttcaaaaag cactaactat tcctgaaaat caaaaatatg gtgcttttca tggtaaagaa
     9541 gcgttcaagc aagctattgt agatttttat caaagacaat ataatgtgac gttagataaa
     9601 gaagatgaag tatgcatttt atatggtaca aaaaatggat tagtggcagt accaacatgt
     9661 gttatcaatc caggagacta tgtattacta cctgatccag gctacacgga ttatttagca
     9721 ggtgtacttt tagctgatgg caagccagtc ccgcttaatt tagaaccgcc acattatttg
     9781 ccagattggt ccaaagttga ttcacaaata atagataaaa caaaactcat ttatttaacg
     9841 tatccaaata atccaactgg atcgacagct acgaaagaag tttttgatga agcgatagct
     9901 aaatttaaag gtacagacac taaaatcgtg catgattttg cttatggtgc tttcggtttc
     9961 gacgctaaaa atcctagtat acttgcttcg gaaaatggga aagatgttgc gattgaaatt
    10021 tattccttgt ctaaaggtta taacatgtca ggttttagag tcggttttgc agttggtaat
    10081 aaagatatga ttcaagcttt gaaaaagtac caaacgcaca caaatgctgg gatgtttggt
    10141 gcattacaag atgccgcaat atatgctttg aatcattatg atgatttttt agaagaacaa
    10201 agcaatgtat ttaaaacacg tcgtgaccga ttcgaagcca tgcttgcaaa agctgatttg
    10261 ccatttgttc atgctaaagg tggcatatat gtatggttgg aaacaccgcc tggttatgac
    10321 agcgagcaat ttgagcaatt tttagtgcaa gagaagtcaa tacttgttgc tccagggaaa
    10381 ccatttggag agaatggtaa tcgttatgtg agaatttcat tggcgttaga tgaccagaaa
    10441 ttagacgaag ctgcaataag attaacagaa ctagcatatt tatatgaata ataaagttaa
    10501 gggtgatgtt aaaatgacaa aaattaaaat catgagtgta cgtgatgaag atatgcctta
    10561 tatcaaggcg tgggcagaga aacatcatgt tgaggtagat attactaaag aagcattaac
    10621 tgatgacaat gttgaaggtg tcgctggtta tgatggctta tcgctatcac aacaaatacc
    10681 attatcagag catgtttata aacgattaaa tgaactaggt attaaacaaa tcgcacaacg
    10741 tagtgctgga tttgatacat atgatttgga gttagcaaac aagtataact ttattgtgtc
    10801 aaatgtgccg tcatactctc cgaattcaat tgcggagttt gctgtgaacc aggctattaa
    10861 tgtggttcgt cattttaatc aaattcaaac gaaagtgcgg gagcatgatt ttagatggga
    10921 acctactatt ttatcgaaat ccattaaaga tttaaaagta gctgttattg gtacaggtcg
    10981 aattggccgt gtagtagccg atatatttgc caatggttat caaagtgatg tggtcgcata
    11041 cgacccgttt cctaatgcta aaattgcaac gtatgtcgat tacaaagata cgattgagga
    11101 agcggttgaa ggtgctgata tcgtgacatt acatgtacct gcaacgaaat ataatcatta
    11161 tctatttaat gctgaattat ttaaacattt taaaaagggc gcagtatttg tcaattgtgc
    11221 gagaggttct ttagtagata ctaaggcgtt attagacgca ttagacaatg gtgtgattaa
    11281 aggtgcagca cttgatacgt atgaatttga acgcaaactt ttcccaagtg atcaaagggg
    11341 caaaacactg aacgatccat tgttagaatc gttgattgac agggaagatg tcatattaac
    11401 accacatatt gcgttttata ctgaagctgc agttaaaaat ctaattgtcg atgcattaga
    11461 tgcaacatta gatgtattgc agactggaga tactaggtta cgagtaaatt aaaaatcgaa
    11521 ctgatgagat aatttggatt gttgggattc tcatcagttc gattttttaa tttggtgttg
    11581 atgacgttga atattgccta attaaacgac atcgtaacct tgatcttcaa ttgcgtcttt
    11641 catttgagat acagcaactt tactgtcatc atattgaaca cttacttgac cattttcaag
    11701 gttaacgtca gctgaagtga caccgtcaat attatttaat gcagattcaa cagcactttt
    11761 gcagtgacca cagctcatac cttcaacatt taaaatttct tgtgacatag cattcacctc
    11821 cttttagagc
//
LOCUS       DAMQWL010000078        11770 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.078, whole genome shotgun sequence.
ACCESSION   DAMQWL010000078 DAMQWL010000000
VERSION     DAMQWL010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 11770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11770
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.078"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(230..1216)
                     /locus_tag="PF788_001871"
     CDS             complement(230..1216)
                     /locus_tag="PF788_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HDG6304130.1"
                     /translation="MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVV
                     TIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKL
                     QVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEE
                     KLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYH
                     KKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKD
                     IFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA"
     gene            1744..2502
                     /gene="map"
                     /locus_tag="PF788_001872"
     CDS             1744..2502
                     /gene="map"
                     /locus_tag="PF788_001872"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDG6304131.1"
                     /translation="MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAK
                     ELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYY
                     ADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLK
                     VIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNE
                     WAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE"
     gene            2719..3105
                     /locus_tag="PF788_001873"
     CDS             2719..3105
                     /locus_tag="PF788_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304132.1"
                     /translation="MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITK
                     KEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIET
                     QIQQTSTEKIATEKTSYLINYMNAVA"
     gene            3120..3821
                     /locus_tag="PF788_001874"
     CDS             3120..3821
                     /locus_tag="PF788_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-active antibiotics response protein"
                     /protein_id="HDG6304133.1"
                     /translation="MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLV
                     YVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKV
                     VATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTI
                     VVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVN
                     IYVSTFIGDVEVIYR"
     gene            3818..4861
                     /locus_tag="PF788_001875"
     CDS             3818..4861
                     /locus_tag="PF788_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDG6304134.1"
                     /translation="MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIF
                     GIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYS
                     ETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
                     QQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLG
                     EGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVE
                     LFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIE
                     VKAPLNKEDSYDD"
     gene            4851..5480
                     /gene="vraR"
                     /locus_tag="PF788_001876"
     CDS             4851..5480
                     /gene="vraR"
                     /locus_tag="PF788_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator VraR"
                     /protein_id="HDG6304135.1"
                     /translation="MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKA
                     HELKPDLILMDLLMDDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSY
                     ILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
                     KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ"
     gene            complement(5596..6813)
                     /locus_tag="PF788_001877"
     CDS             complement(5596..6813)
                     /locus_tag="PF788_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HDG6304136.1"
                     /translation="MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQF
                     QSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMF
                     PMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILA
                     IWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVI
                     SHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIIFIVLYSVAPNVKTKLKSVLPGAVFT
                     SIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQR
                     SVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDK
                     NIKDKIVDKLKKD"
     gene            complement(7091..7366)
                     /locus_tag="PF788_001878"
     CDS             complement(7091..7366)
                     /locus_tag="PF788_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HDG6304137.1"
                     /translation="MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTR
                     KPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR"
     gene            complement(7373..7837)
                     /locus_tag="PF788_001879"
     CDS             complement(7373..7837)
                     /locus_tag="PF788_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HDG6304138.1"
                     /translation="MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSW
                     NLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKG
                     QLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG"
     gene            7984..8184
                     /locus_tag="PF788_001880"
     CDS             7984..8184
                     /locus_tag="PF788_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1128 family protein"
                     /protein_id="HDG6304139.1"
                     /translation="MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQS
                     RERLSPSEVTAIADALGQLRHE"
     gene            8187..9443
                     /locus_tag="PF788_001881"
     CDS             8187..9443
                     /locus_tag="PF788_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HDG6304140.1"
                     /translation="MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTH
                     LIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEIKSYDVEARMDYVKRGAA
                     NLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKR
                     VYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYV
                     SEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPL
                     SYNGTIIDQFKLMFKDGEIIDFSAGKGEAVLKDLINTDEGSRRLGEVALVPDDSPISN
                     RNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSS
                     DLTIYGIFEDGSKELVFENGNWASTF"
     gene            9533..10063
                     /locus_tag="PF788_001882"
     CDS             9533..10063
                     /locus_tag="PF788_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDG6304141.1"
                     /translation="MTNQDRPMKSMSESKCYKNRQVFPQDTNHHHTMFGGTLMANIDE
                     IAAITAMKHAGAQVVTASTDSVDFLKPIKTGDILQYVAMVSYAGTSSMEVVVQIRIDD
                     VFNNKHDLAALSYLTFVALDDEGKPKHVPGVYPEDDVEKWFYDTAPQRVERRKARRIE
                     SKQTIEYLAQVQHIRD"
     gene            complement(10323..11468)
                     /gene="yfkAB"
                     /locus_tag="PF788_001883"
     CDS             complement(10323..11468)
                     /gene="yfkAB"
                     /locus_tag="PF788_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/CxCxxxxC motif protein YfkAB"
                     /protein_id="HDG6304142.1"
                     /translation="MRNNKPKISIQNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRC
                     SHCAVGYTLQTVDPEPLDMDLIYRRLDEIPNLRTMSITGGEPMFSKKSIRNVVKPLLK
                     YAHHRGIYTQMNSNLTLPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQPPL
                     KAKLKLYEQMISNARTLSEQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHP
                     MYPADFASQLNVLTLAEMKKTIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRL
                     RNAKNVTTRNDPDGRSRLNVNVFTGNVIVTDFGDETGTISNIQKDKLTDVFDKWLSSD
                     LAKSLNCHCSEFSCLGPNVLVKNMYYPNMDFKDNERHMHKQPQIIQF"
     gene            complement(11513..>11770)
                     /locus_tag="PF788_001884"
     CDS             complement(11513..>11770)
                     /locus_tag="PF788_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDG6304143.1"
                     /translation="FDENYFIFGGLEPIRYVTYSYHFKSVFPNLKIHHLRHSYASYLI
                     NNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD"
BASE COUNT         4117 a         1774 c         2040 g         3839 t
ORIGIN      
        1 gattcccaat ttctacagac aatgcaagtt ggggtgtggg ccccaacaaa gagaaattgg
       61 attcccaatt tctacagaca atgcaagttg gggtgtgggc cccaacacag agaatttcga
      121 aaagaaattc tacaggcaaa gcgagttggg gtgggacgac gaaataaatt ttatgaaaat
      181 atcatttctg tcccactccc atggtgccaa ttagcataag gtacttaaat taagcatatc
      241 tgctgtctag cagtcgataa atcattagaa cttcgtatag tatatgactt ttaatttgat
      301 tttcaccact aatttcaagt gcttttatag tcgaacgtaa agtttctaca gaatcatctt
      361 ctctcttaaa agaaccatca taaaatatat ctttgatgct actactaatt tttagcaatg
      421 ccattttttc gtcacctgaa aagttaacac gagtattttt aggcaagtaa atgatatttg
      481 ataaatgagt gataaacaaa cgattcgtat atgcacgttt agttaattga ttgagtaatt
      541 tccaatcaca ttcttttttc ttatgatagc ttaattcatc acgttgataa cttattaacg
      601 tttcaacttg attatttaaa ttgaaaatat ttttatatgc tttttcgctt ttatcagatt
      661 gcagtcttga taagataagt tcttggcagc gattgtaaaa taatttatac atcaaggcat
      721 ctgtcttact taatttttct tcgacctgac cataatactt aggtggaaac accatgaagt
      781 taattaaacc tgatgtcacg agtccaataa ttgctgtcaa tgttcgagac aaaaagttga
      841 atatgtaggc atcatgaata cctggaatca tagctaatga tgttagtaca gcgacattcg
      901 taccaacttg caatttgagt tttgtacaga ataaaatcgt gaacgttgca ctcaatgcat
      961 atgtaaaagg tgattgatcg ccgaataaat atgtaaataa tactgcaaag cctgcaccaa
     1021 ttaccgtagc aggtaatcta cgataacctt taataagtga tgccttggca gttggttcaa
     1081 ttgtgactac agctgttaaa atggcataga tgggtgttaa atctagtgcc atacaaaaga
     1141 cagctgttaa aaaaatggca ataccagttt taattgttct ggcaccaatt aaatgtttat
     1201 accattgatc gttcattttt taacctctaa tcatcgtaaa atcttagcga gcgctttata
     1261 ataatagtat cgtacattgg aaaagttcat gtatgtaaaa tatttgaaat aatcatacat
     1321 aagcattact ttgattttca tatacattaa tcaaagttct gggctccaca atgttatatt
     1381 gttagtagtt gactgaaata aaatgcactt gtaacaagca tttttcaatt atagtccggg
     1441 gccccaacat agagaatttc aaaaaagaaa ttctacaggc aatgcaggtt ggcggggccc
     1501 caacacagaa gctgacgaaa agtcagctta cgataatgtg caggttggcg gggccccaac
     1561 atagagaaat tggatctaca atttctacag gcaatgcaag ttggggtaca acgataaaga
     1621 aatatttttt ctttatcaca ctatgtctca ctcactttcc aaaatactaa agtaacatct
     1681 ttagtatatc aaagaatttt tgctataata agttataatt atataaaaaa ggaacgggat
     1741 aaaatgattg taaaaacaga agaagaatta caagcgttaa aagaaattgg atacatatgc
     1801 gctaaagtgc gcaatacaat gcaagctgca accaaaccag gtatcactac gaaagagctt
     1861 gataatattg cgaaagagtt atttgaagaa tacggtgcta tttctgcgcc aattcatgat
     1921 gaaaattttc ctggtcaaac gtgtattagt gtcaatgaag aggtggcaca tgggattcca
     1981 agtaagcgtg tcattcgtga aggagattta gtaaatattg atgtatcggc tttgaagaat
     2041 ggctattatg cagatacagg catttcattt gtcgttggag aatcagatga tccaatgaaa
     2101 caaaaagtat gtgacgtagc aacgatggca tttgagaatg caattgcaaa agtaaaaccg
     2161 ggtactaagt taagtaacat tggtaaagcg gtgcataata cagctagaca aaatgatttg
     2221 aaagtcatta aaaacttaac aggtcatggt gttggtttat cattacatga agcaccagca
     2281 catgtactta attactttga tccaaaagac aaaacattat taactgaagg tatggtatta
     2341 gctattgaac cgtttatctc atcaaatgca tcatttgtta cagaaggtaa aaatgaatgg
     2401 gcttttgaaa cgagcgataa aagttttgtt gctcaaattg agcatacggt tatcgtgact
     2461 aaggatggtc cgattttaac gacaaagatt gaagaagaat agttcaacat atactaagac
     2521 taaagtatga acatcattta gttccggagc ctattcatat tggtttcgga actgttttat
     2581 aataattaag aacacaatca atgcgtcatt tcaaaaatat gttgtaacaa agtagttttt
     2641 aagcaaacat atcatcgaca tcaacgaaga tacatagcgc atttggtatt ttaaaactta
     2701 ttataaaagg tgatagttat gaactatgtt gaacgttata ttgaacagtt tttgagagca
     2761 acagtaagaa ataatatcaa gcactacctt ttaatgctag atgaaaaaat gaaaaattta
     2821 gatgattata tgcgttattt aattactaaa aaagaacaac ttagcaagtt aattgacagt
     2881 ctaatgctaa cattagaaaa taaatatatt gatattgctg aagcatttca aattcaatgt
     2941 gcaagagaaa tcaataatca agaaattgaa aatattaaat cagagttgaa taaagttgaa
     3001 gcatattatg cacaaattga aactcaaatt caacaaactt caactgaaaa aatagcaaca
     3061 gaaaaaacat cgtatctaat aaattatatg aacgctgtgg catagaaagg cggcgaaaca
     3121 tgacacacaa atatatatca acgcaaatgt tgatcatttt tactgcatta atgattattg
     3181 ccaattttta ctacatattt tttgaaaaaa ttggcttttt actcgttcta ttattgggat
     3241 gtgtattagt ttatgtagga tatctttatt ttcataaaat acgtggcctt ttggcgtttt
     3301 ggataggcgc gctattaatt gcattcacat tattgtctaa taagtataca atcatcatct
     3361 tgttcgtctt tttattatta cttattgtgc gttatttaat acacaagttt aaaccaaaaa
     3421 aagtagttgc gacggatgag gttatgactt caccatcttt tattaaacaa aagtggtttg
     3481 gtgagcaacg tacaccagtt tatgtatata agtgggaaga tgtacaaatt caacatggaa
     3541 ttggcgacct acatattgac ttaacaaaag ctgcaaatat taaggaaaat aataccattg
     3601 ttgttagaca cattttaggt aaagtgcagg ttatattgcc ggttaattac aatattaatt
     3661 tacatgtagc tgctttttat ggaagtactt acgtgaatga aaaatcatat aaagttgaaa
     3721 ataacaatat tcatattgaa gaaatgatga aaccggataa ctatacagtt aatatctacg
     3781 tatcaacgtt tatcggagac gtagaggtga tttatcgatg aaccactaca ttagaacaat
     3841 tggttcaatg ctcatcttag tatatagcat gctagctgca tttctgttca tcgataaagt
     3901 ttttgtaaat atcatctatt ttcaaggtat gttttataca caaatattcg gaataccagt
     3961 ttttttattt ttaaatctca tcatcatatt attgtgtatt attgttggtt cggtactcgc
     4021 ttacaaaatc aatcagcaaa atgattggat taagacgcaa attgagcgtt caatggaagg
     4081 cgaaacagtt ggcattaatg atcaaaatat agaaatatat agtgaaacgt tagatttata
     4141 ccatacactc gtacctttaa atcaagaatt gcataagttg cgacttaaaa ctcaaaactt
     4201 aaccaatgaa aattataata ttaatgatgt gaaagttaaa aagattattg aagatgaacg
     4261 tcaaagacta gcacgagaac ttcacgattc tgttagtcag caactttttg cggcaagtat
     4321 gatgctatct gctatcaaag aaacgaagtt agaaccacca ttagaccaac aaattcctat
     4381 tttagagaaa atggttcaag attcgcagtt agaaatgcgt gctttgctgt tacatttaag
     4441 accgcttggt ttaaaagaca aatctttagg tgagggtatt aaagatttag ttattgattt
     4501 acaaaaaaaa gtgccaatga aagttgtgca tgaaatacaa gattttaaag tgcctaaagg
     4561 tattgaagat catttgttca gaattacaca ggaagcaatt tcgaatacat tgcgtcattc
     4621 aaacggtaca aaagtgacag tagaattgtt taataaagac gattatttat tgttgagaat
     4681 tcaagataat ggtaaaggtt ttaatgttga tgaaaaatta gaacaaagtt atggacttaa
     4741 aaatatgcgt gaaagagctt tggaaattgg tgcaacgttc catattgtat cattgccaga
     4801 ttcaggtaca cgtatcgagg tgaaagcacc tttaaataag gaggattcgt atgacgatta
     4861 aagtattgtt tgtggatgat catgaaatgg tacgtatagg aatttcaagt tatctatcaa
     4921 cgcaaagtga tattgaagta gttggtgaag gcgcttctgg taaagaagca attgccaaag
     4981 cccatgagtt gaagccagat ttaattttaa tggatttact tatggatgac atggatggtg
     5041 tagaagcgac gactcagatt aaaaaagatt taccgcaaat taaagtatta atgttaacta
     5101 gttttattga agataaagag gtatatcgtg cattagatgc aggtgtcgat agttacattt
     5161 taaaaacaac aagtgcaaaa gatatcgccg atgcagttcg taaaacttct agaggagaat
     5221 ctgtttttga accggaagtt ttagtgaaaa tgcgtaaccg tatgaaaaag cgcgcagagt
     5281 tatatgaaat gcttacagaa cgagaaatgg aaatattatt attgattgcg aaaggttact
     5341 caaatcaaga aattgctagt gcatcgcata ttactattaa aacggttaag acacatgtga
     5401 gtaacatttt aagtaagtta gaagtgcaag atagaacaca agctgttatc tatgcattcc
     5461 aacataattt aattcaatag ttcatatcga attaagaaaa gttacttacg ccaatcacaa
     5521 tataacatca aatagacacc aaaaaacaga ggttttcgca ataatcatta gcgaaaacct
     5581 ctgttttgtt ggtgtttagt cttttttaag cttatcaacg attttgtctt ttatattttt
     5641 atcatcttct ggataggtat cactaggatg ttcatcaaca tgatacgtac gttgatgtgt
     5701 tgcattacta tcttcatcat attcgtatct agtgttctca ttataatgat ttttattatt
     5761 gtcatcatgt tctaatgctg cttcttcagg tgttttacct ttaattacac tacgctgatg
     5821 aatgattgca ttgatttcag caccgacaat tataataaaa cttgtgatat ataaccatag
     5881 taacaaaatg atgatacccg cgatactgcc atatgtttta gaatagttac caaaatttga
     5941 aatataccaa ccaaaaccaa atgaaccagc taaccaaata attgaagtaa atactgcacc
     6001 tggtaatact gacttaagct tcgttttaac gttaggtgca accgaatata acacgataaa
     6061 tatgataaat ataataatga ttggtaacac aattctaata aggttaaaaa tccatttcac
     6121 ttgttcgtca aatccaagtg gaccgaatag gaaatgacta attacagaac caagcgttgg
     6181 taatgctaga gcaactacaa acacaacgcc cataactaca gtgaagacaa cacttagtag
     6241 ttttaatacg attccattac ggctatcttc tacatcgtaa gcaacattga aagaattcat
     6301 aattgcagtc attccatttg aagctgacca aattgctaaa atcaaaccga tagataataa
     6361 gccaccactg gagttttgag ttatatcacc aattacactc ttaattagag tagatgtttc
     6421 agcgggtgca ttgcttaaca tattagtaat ttgactctgc ttaatattga aaaatggtaa
     6481 taatgttaat aggaaaagca acatagggaa catagcaagt acgaaatggt aagtcatttg
     6541 tgctgctagt cctgaggcat catcttttcc tatgcgatag atgagatatg ataagaaatt
     6601 agagtctttc ttatattttg caggtttatt taatcttgat aagaagaaaa cctgatcatc
     6661 ttttttaggt ttcttagatt ggaattgttg aggttcaata tatgtacgat caacatcaat
     6721 tttgggatta cttttatttt tcttttttga ctcctcttgc gcttccttaa cagaattaag
     6781 gtattttgaa gaagagtgat cctttttcga catgtgcact ccttaacctt tctctatgta
     6841 atgttttata aagtaactat tagtatttat ccaattataa aaaaactaaa caatgatatg
     6901 ctttaaaaat gataatatta tagaaattaa ttgatttaaa tctttcatag gctattttga
     6961 tttaaaatta aaacaaaggc aatactgaaa caatgcagtt tggccaatca ttgtattatc
     7021 atttaataat gataactatg aaaggcgtac accaaattgt taagtattgc cttataaaaa
     7081 caaaatcatc ttagcgttga ttttttctat taacaaatgt ttctttcgca tcctttaatg
     7141 aacgttctaa ttcaggatta ttacgacgaa tttcttcaac aacatctttc cagtataaaa
     7201 cttcgtcttt aatcttgctg actttagaag gcttacgagt gcggttacca ttttttgcat
     7261 ctttaactga ttgaactaaa gcttgacgtg tagatttatc agctaaacta attgcaccac
     7321 caattacggc accaattaaa ataccaggaa caaatttatt ttccataaaa aactacccct
     7381 ctttcaaatt tgcatctttt acgatgtagt ctattaaatt atcacaagat gataatacca
     7441 tgtcgtatac accttcaaaa ttattcgtgt agtatggatc tggtacatca ctctcttcca
     7501 tattactaaa ttctaacagt ttgaacaatt gtcccttaag attaggattg atagatttaa
     7561 tattatcaac gttactttga tccatagcca caatgtaatc aaaatcatct gtcgcttcga
     7621 ataattcact aatcatgcca tcaaatggaa tattgtgttt gttgagaatt ttttgtgtac
     7681 cttcatgagg tggctctcct aaattccagc taccagtacc tcttgaatgt actttaatat
     7741 catgaatatt tctgtcttta agtctttgtc gcatgattgc ttctgccatt ggagaacgac
     7801 atatattgcc aagacagaca aatgctacat ctaccatttt gattcctcca aactatgtag
     7861 ttatatcccc attttatagc gactttaaac aataagaaag cagattatat aaaattctat
     7921 taaagtttat taaattgtga tactttgata acataactat tattagaggt gaacattgtg
     7981 gctatgacaa atgaagagaa agtattagct attagagaga agttaaatat tgttaatcaa
     8041 ggattattag atcctgaaaa atataaaaat gcaaatgaag aagaattaac agatatatat
     8101 gattttgttc aatcaagaga aagattgtcg ccaagtgaag tgacagctat tgctgacgct
     8161 ttaggacaat tgcgacacga ataggagtgg gaattttgac taattacaaa gaaaagttac
     8221 aacaatacgc tgaactatta gttaaggttg gtatgaatgt tcaaccaaaa cagccagtat
     8281 ttattagatc atcagtagaa acattagaat taacgcattt aattgtagaa gaagcatatc
     8341 attgtggcgc ttcagatgta cgtgttgtat atagcgatcc aaccttaaaa cgcttaaaat
     8401 ttgaaaatga atctgtggaa cattttgcta atcatgagat aaaatcatat gatgttgaag
     8461 cgagaatgga ttacgttaaa cgtggcgctg ctaatttagc acttattagt gaagatcctg
     8521 atttaatgga tggtatcgat agccaaaaat tacaagcatt tcaacaacaa aacgcacgcg
     8581 catttaaagg atatatggaa agtgtacaaa aaaatcaatt tccatgggtc gtagctgctt
     8641 ttccatctaa agcttgggcg aagagagtgt atcctgaact atctgtagaa gaagcatata
     8701 ttaagtttat tgacgaggta ttcgatattg tgcgaattga tggtaacgat ccagttgaaa
     8761 attggcgtca acacatcgct aatttaagtg tttacgctca aaagttacaa caaaaaaatt
     8821 accatgcgtt gcattatgta tctgaaggta ctgatttaac agtaggttta gcgaaaaatc
     8881 atatctggga agatgctaca agttatgtta acggcaagga acaagctttt attgctaata
     8941 taccaactga agaagtattt acagcaccag atcgaaatag agtagatgga tatgttacta
     9001 ataaattgcc tttaagttat aatggcacaa ttatcgatca atttaaattg atgtttaaag
     9061 atggagagat tattgatttt tcagctggaa aaggtgaagc ggtattgaaa gatttaatca
     9121 atactgatga aggttcaaga agattaggtg aagtagcatt agtacctgat gattcaccga
     9181 tatcaaatcg taataccatt ttttacaata ctttatttga tgaaaatgca gcatgtcatt
     9241 tagcgattgg atctgcttac gcctttaata ttcaaggtgg aacggaaatg actgttgagg
     9301 aaaagattgc aagcggatta aatgattcaa atgtacatgt cgatttcatg attggtagta
     9361 gtgatttgac tatttatggc atattcgaag atggttcaaa agaactagta tttgaaaatg
     9421 gaaattgggc atcaacattt taataaatgt tattttgagg tgctgagtag gaaatgaaac
     9481 atgtatttaa aggtcaaata cgtgattaaa gtatagattg ggagataaaa taatgacaaa
     9541 tcaggacaga ccaatgaaat ctatgtcaga atcaaaatgt tataaaaata gacaagtttt
     9601 ccctcaagat acgaatcacc atcatacaat gtttggtggt acattgatgg ctaatattga
     9661 tgaaattgca gcaatcacag ctatgaaaca tgctggtgcg caagtagtta ccgcatctac
     9721 agactcagta gatttcttaa agccgattaa aacaggggac atattacaat acgtagcgat
     9781 ggtttcatac gctgggacta gttcaatgga agtggtcgtt caaattagaa ttgacgatgt
     9841 atttaataac aagcatgatt tagctgcatt aagttactta acatttgttg cgttagatga
     9901 tgaaggcaaa cctaaacatg tacctggtgt atatccagaa gatgatgttg aaaaatggtt
     9961 ttatgataca gcaccacaac gtgttgaacg aagaaaagca cgtcgcattg aaagtaaaca
    10021 aacaattgaa tatttagctc aagtgcaaca tattagagac taaaaatata aagacagatt
    10081 gttaaggatg aattgaactg ttatgttcga atattccacc tacaatctgt ctttttgatt
    10141 atgcacgttt atgcttttag ttaaaattta ccccttttat tatagactat tagtcctatt
    10201 aaatgccctt tattatttaa gtagagtact gccagcaatt aattgttttt tattttataa
    10261 tagcattaaa atatgcggag actacttatc gataaagtgc ttctccgcat aattaagagt
    10321 ttttaaaatt gtataatttg tggttgtttg tgcatatgac gctcattatc tttaaaatcc
    10381 atattcggat agtacatatt tttaacaaga acatttggtc ctaaacaact aaactcggaa
    10441 caatgacaat ttaatgattt agcaagatca gaggataacc atttatcaaa tacatctgtt
    10501 aatttatctt tttgtatatt cgaaattgta cctgtttcat ctccgaaatc agttacgatt
    10561 acattacctg taaatacatt gacatttaaa cgactacggc catccgggtc atttctagtc
    10621 gttacatttt tagcatttct taaacgtgat agtaactttt gatcttcatc atcctttaag
    10681 catggaaaca caggcaaagt accaaataac atccaaatat cttcatctct gaaatccaat
    10741 atatcatgaa ttgtcttttt catttccgct agagttaaca catttaattg acttgcaaag
    10801 tcagctggat acatagggtg aatctcgtgt ctgctacatt tcatatcatg aacgacttct
    10861 tgatgtattt ttcgtaaatg tggtagcgta ctttgattga gcattgtttc cgcagataca
    10921 aacattcctt gttctgataa tgtacgtgca ttcgaaatca tttgttcata taattttaac
    10981 ttagctttta acggtggttg cttcttcatt gcgccaaagc caacatttgc gaattcatca
    11041 gttgttcccc agttgtgtga gatatgcata acatcgatat attcagcaat atctaaataa
    11101 cgatcttgag gcaatgttag gtttgaattc atttgtgtat atatacctcg atgatgtgca
    11161 tactttaata gaggtttaac aacatttcta atagactttt tagaaaacat tggttcgcca
    11221 cctgtaatag acatcgttcg cagatttgga atttcatcaa gtctacgata aattaagtcc
    11281 atatctaaag gctcggggtc gacagtttgt aaagtataac caactgcaca gtggctacaa
    11341 cgcatattac aaagatttgt agttgtaaat tcgatgttac ttaaagttaa ttggccatgt
    11401 tctttaacat cgttatatgc ttcccatggg tcgttttgaa tacttatttt aggcttgtta
    11461 ttacgcattt tataaactcc ttaattgtta tttgatacca atttgatacc gtttaatcaa
    11521 atatgctcat agcttgatgt tttttatcag tatataaatg agagtacgtt tgaattgttt
    11581 ctgtaatgtt agaatgcctc attaattcca ttaataaata catatctaca ccattattaa
    11641 ttaaatagct agcgtacgag tgtcttaaat ggtgtatttt tagattcggg aatacagatt
    11701 taaaatgata cgaataagta acgtatctaa taggttctaa acccccgaat ataaaatagt
    11761 tttcgtcaaa
//
LOCUS       DAMQWL010000079        11662 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.079, whole genome shotgun sequence.
ACCESSION   DAMQWL010000079 DAMQWL010000000
VERSION     DAMQWL010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 11662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11662
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.079"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            102..194
                     /locus_tag="PF788_001885"
     CDS             102..194
                     /locus_tag="PF788_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304144.1"
                     /translation="MLKSKFPSPLSTVDISFFEIIYIFSYQDIL"
     gene            326..559
                     /locus_tag="PF788_001886"
     CDS             326..559
                     /locus_tag="PF788_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1146 domain-containing protein"
                     /protein_id="HDG6304145.1"
                     /translation="MDYIGQYAVIHLVLHVVCICIAYWALQSIRLDQFFKKGYATQLQ
                     VCMIFVAILLGTAVSNFIVDLLQYSTQVKYLIK"
     gene            670..1935
                     /gene="murA"
                     /locus_tag="PF788_001887"
     CDS             670..1935
                     /gene="murA"
                     /locus_tag="PF788_001887"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDG6304146.1"
                     /translation="MDKIVIKGGNKLTGEVKVEGAKNAVLPILTASLLASDKPSKLVN
                     VPALSDVETINNVLTTLNADVTYKKDENAVVVDATKTLNEEAPYEYVSKMRASILVMG
                     PLLARLGHAIVALPGGCAIGSRPIEQHIKGFEALGAEIHLENGNIYANAKDGLKGTSI
                     HLDFPSVGATQNIIMAASLAKGKTLIENAAKEPEIVDLANYINEMGGRITGAGTDTIT
                     INGVESLHGVEHAIIPDRIEAGTLLIAGAITRGDIFVRDAIKEHMASLVYKLEEMGVE
                     LDYQEDGIRVRAEGELQPVDIKTLPHPGFPTDMQSQMMALLLTANGHKVVTETVFENR
                     FMHVAEFKRMNANINVEGRSAKLEGKSQLQGAQVKATDLRAAAALILAGLVADGKTSV
                     TELTHLDRGYVDLHGKLKQLGADIERIND"
     gene            1969..2409
                     /gene="fabZ"
                     /locus_tag="PF788_001888"
     CDS             1969..2409
                     /gene="fabZ"
                     /locus_tag="PF788_001888"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDG6304147.1"
                     /translation="METIFDYNQIKQIIPHRQPFLLIDKVVEYEEGQRCVAIKQVSGN
                     EPFFQGHFPEYAVMPGVLITEALAQTGAVAILNSEENKGKIALFAGIDKCRFKRQVVP
                     GDTLTLEVEITKIKGPIGKGNAKATVDGQLACSCELTFAIQDVK"
     gene            complement(2468..2908)
                     /locus_tag="PF788_001889"
     CDS             complement(2468..2908)
                     /locus_tag="PF788_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000846746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwpF-like family protein"
                     /protein_id="HDG6304148.1"
                     /translation="MKTFKAVRFQIVNEHGRIIEYELEDGVIINKEESGTGWLLEIVI
                     SNEHYETFKEYQDNEQLLDIRVVITRPANDPALFESTVKSIKNFKTTMSIVFECHIYT
                     LRQQYAESLLEQLIDDGLSGEELKKSFNRMMQSKPKLKDEKLEE"
     gene            3102..3449
                     /locus_tag="PF788_001890"
     CDS             3102..3449
                     /locus_tag="PF788_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002466750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDG6304149.1"
                     /translation="MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIV
                     CDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRKYDKDGQTHFVTELYVETIKFMS
                     PKSQNNEILSDSI"
     gene            3886..4581
                     /gene="sceD"
                     /locus_tag="PF788_001891"
     CDS             3886..4581
                     /gene="sceD"
                     /locus_tag="PF788_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase SceD"
                     /protein_id="HDG6304150.1"
                     /translation="MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSN
                     DQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAWNYHATGTNGADMSAQAPATNNV
                     APSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKSSEGSSVNVNAHLK
                     QIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVK
                     LYNTGGAGHWVTA"
     regulatory      4785..4887
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4967..5656
                     /gene="tenA"
                     /locus_tag="PF788_001892"
     CDS             4967..5656
                     /gene="tenA"
                     /locus_tag="PF788_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HDG6304151.1"
                     /translation="MEFSQKLYQAAKPIINDIYEDDFIQKMLSGDIGADALRHYLKAD
                     AAYLKEFTNLYALLIPKMNSMNDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIK
                     TKVWPPSGDHYIKHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSDHKLNREKDT
                     AKWFDFYSTEMDDIINVFEALMNKLAESMSDKELEQVKQVFLESCIHERRFFNMAMTL
                     EQWEFGGKVND"
     gene            5649..6479
                     /gene="thiD"
                     /locus_tag="PF788_001893"
     CDS             5649..6479
                     /gene="thiD"
                     /locus_tag="PF788_001893"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDG6304152.1"
                     /translation="MIKPKIALTIAGTDPTGGAGVMADLKSFHSCGVYGMGVVTSIVA
                     QNTLGVQHIHNLNHQWVDEQLDSVFNDTLPHAIKTGMIATADTMETIRHYLMQHESIP
                     YVIDPVMLAKSGDSLMDNDTKQNLQHTLLPLADVVTPNLPEAEEITGLTIDSEEKIMQ
                     AGRIFINEIGSKGVIIKGGHSNDTDIAKDYLFTNEGVQTFENERFKTKHTHGTGCTFS
                     AVITAELAKGRPLFEAVHKAKKFISMSIQYTPEIGRGRGPVNHFAYLKKEGLDDELSK
                     "
     gene            6463..7254
                     /gene="thiM"
                     /locus_tag="PF788_001894"
     CDS             6463..7254
                     /gene="thiM"
                     /locus_tag="PF788_001894"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDG6304153.1"
                     /translation="MNYLNKIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPE
                     EAEEFYKVAQALLINIGTLTAENEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFC
                     KLLLKSAKVSVIKGNASEILALIDDTATMKGTDSDANLDAVAIAKKAYATYKTAIVIT
                     GKEDVIVQDNKAFVLANGSPLLARVTGAGCLLGGVIAGFLFRETEPDIEALIEAVSVF
                     NIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQEVE"
     gene            7256..7897
                     /locus_tag="PF788_001895"
     CDS             7256..7897
                     /locus_tag="PF788_001895"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDG6304154.1"
                     /translation="MFNQSYLNVYFICGTSDVPSHRTIHEVLEAALKAGITLFQFREK
                     GESALKGNDKLVLAKELQHLCHQYDVPFIVNDDVSLAKEINADGIHVGQDDAKVKEIA
                     QYFTDKIIGLSISDLDEYAKSDLTHVDYIGVGPIYPTPSKHDAHIPVGPEMIATFKEM
                     NPQLPIVAIGGINTNNVAPIVEAGANGISVISAISKSENIEKTVNRFKDFFNN"
     gene            7983..8855
                     /gene="yidC"
                     /locus_tag="PF788_001896"
     CDS             7983..8855
                     /gene="yidC"
                     /locus_tag="PF788_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDG6304155.1"
                     /translation="MKKKALLPLFLGIMVFLAGCDYSKPEKRSGFFYNTFVDPMKNVL
                     DWLGNNLLNDNYGLAIIILVLVIRIILLPFMLSNYKNSHMMRQKMKVAKPEVEKIQEK
                     VKRARTQEEKMAANQELMQVYKKYDMNPIKSMLGCLPMLIQLPIIMGLYFVLKDQLVD
                     GLFKYPHFLWFDLGRPDIWITIIAGVLYFIQAYVSSKTMPDEQRQMGYMMMVISPIMI
                     IWISLSSASALGLYWSVSAAFLVVQTHFANIYYEKVAKKEVQPFIEAYEREHNGGSNK
                     KGKNTQVVSKKKKK"
     gene            complement(9668..10315)
                     /locus_tag="PF788_001897"
     CDS             complement(9668..10315)
                     /locus_tag="PF788_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDG6304156.1"
                     /translation="MQQSDVISAAKKYMESIHQNDYTGHDIAHVYRVTALAKSIAENE
                     GVNDTLVIELACLLHDTVDEKVVDANKQYVELKSFLSSLSLSTEDQEHILFIINNMSY
                     RNGKNDHVTLSLEGQIVRDADRLDAIGAIGVARTFQFAGHFGEPMWTEHMSLDKINDD
                     LVEQLPPSAIKHFFEKLLKLESLMHTDTAKMIAKERHDFMMMYLKQFFTEWNCHD"
     gene            complement(10343..>11662)
                     /gene="cls"
                     /locus_tag="PF788_001898"
     CDS             complement(10343..>11662)
                     /gene="cls"
                     /locus_tag="PF788_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HDG6304157.1"
                     /translation="PLFGFILYLLLGRQIQRDQIFKIDKEDKKGLELIVDEQLAALKN
                     ENFSNSNYQIVKFKEMIQMLLYNNAAFLTTDNDLKIYTDGQEKFDDLIQDIRNATDYI
                     HFQYYIIQNDELGRTILNELGKKAEQGVEVKILYDDMGSRGLRKKGLRPFRNKGGHAE
                     AFFPSKLPLINLRMNNRNHRKIVVIDGQIGYVGGFNVGDEYLGKSKKFGYWRDTHLRI
                     VGDAVNALQLRFILDWNSQATRDHISYDDRYFPDVNSGGTIGVQIASSGPDEEWEQIK
                     YGYLKMISSAKKSIYIQSPYFIPDQAFLDSIKIAALGGVDVNIMIPNKPDHPFVFWAT
                     LKNAASLLDAGVKVFHYDNGFLHSKTLVIDDEIASVGTANMDHRSFTLNFEVNAFIYD
                     QQIAKKLKQAFIDDLAVSSELTKARYAKRSLWIKFKEGISQLLSPIL"
BASE COUNT         4077 a         1880 c         2065 g         3640 t
ORIGIN      
        1 gggccccgtc aactactgcc aaatacaaca ctatagagtc tagacattga tttatgtccg
       61 actcccaaga atagttttac ttttttacaa tcactaatag attgctaaaa tcaaaatttc
      121 cttcaccact atctacagtc gacatttcat tttttgaaat tatctacatt ttttcatacc
      181 aagatatttt atagttatga tatttatgta aaaagaatta tatagtaagt tagcttaaac
      241 tttactaaaa acgggtatta aactttgtat cattatttaa atttttcatg tacaatgtaa
      301 tacagtaatc ttatgaggtg ataaaatgga ttatatcgga caatatgcag ttatccattt
      361 agtgttacat gttgtatgta tttgtattgc ctattgggct ttacaatcaa ttagattaga
      421 tcaatttttt aaaaaaggat acgccactca attacaagtg tgtatgatat ttgttgctat
      481 tttattaggc actgcagtaa gcaattttat tgtagatttg ttacaatact cgacgcaggt
      541 aaaatattta ataaaataag tctaactcta tgatttgtaa tcaaaactag atataattaa
      601 ataatgactt aaaataattt taaaataggg aaatgtaaag taataggagt tctaagtgga
      661 ggatttacga tggataaaat agtaatcaaa ggtggaaata aattaacggg tgaagttaaa
      721 gtagaaggtg ctaaaaatgc agtattacca atattgacag catctttatt agcttctgat
      781 aaaccgagca aattagttaa tgttccagct ttaagtgatg tagaaacaat aaataatgta
      841 ttaacaactt taaatgctga cgttacatac aaaaaggacg aaaatgctgt tgtcgttgat
      901 gcaacaaaga ctctaaatga agaggcacca tatgaatatg ttagtaaaat gcgtgcaagt
      961 attttagtta tgggacctct tttagcaaga ctaggacatg ctattgttgc attgcctggt
     1021 ggttgtgcaa ttggaagtag accgattgag caacacatta aaggttttga agctttaggc
     1081 gcagaaattc atcttgaaaa tggtaatatt tatgctaatg ctaaagatgg attaaaaggt
     1141 acatcaattc atttagattt tccaagtgta ggagcaacac aaaatattat tatggcagca
     1201 tcattagcta agggtaagac tttaattgaa aatgcagcta aagaacctga aattgtcgat
     1261 ttagcaaact acattaatga aatgggtggt agaattactg gtgctggtac agacacaatt
     1321 acaatcaatg gtgtagaatc attacatggt gtagaacatg ctatcattcc agatagaatt
     1381 gaagcaggca cattactaat cgctggtgct ataacgcgtg gtgatatttt tgtacgtgat
     1441 gcaatcaaag aacatatggc gagtttagtc tataaactag aagaaatggg cgttgaattg
     1501 gactatcaag aagatggtat tcgtgtacgt gctgaagggg aattacaacc tgtagacatc
     1561 aaaactctac cacatcctgg attcccgact gatatgcaat cacaaatgat ggcattgtta
     1621 ttaacggcaa atggtcataa agtcgtaacc gaaactgttt ttgaaaaccg ttttatgcat
     1681 gttgcagagt tcaaacgtat gaatgctaat atcaatgtag aaggtcgtag tgctaaactt
     1741 gaaggtaaaa gtcaattgca aggtgcacaa gttaaagcga ctgatttaag agcagcagcc
     1801 gccttaattt tagctggatt agttgctgat ggtaaaacaa gcgttactga attaacgcac
     1861 ctagatagag gctatgttga cttacacggt aaattgaagc aattaggtgc agacattgaa
     1921 cgtattaacg attaattcag taaattaata taatggagga tttcaaccat ggaaacaatt
     1981 tttgattata accaaattaa acaaattata cctcacagac agccattttt attaattgat
     2041 aaagtagttg aatatgaaga aggtcaacgt tgtgtggcta ttaaacaagt atcaggaaac
     2101 gaaccattct ttcaagggca ttttcctgag tatgcggtaa tgccaggcgt attaattact
     2161 gaagcgttag ctcaaacagg tgcggtagct attttaaata gtgaagaaaa taaaggtaaa
     2221 atcgctttat ttgctggtat tgataaatgt cgttttaaac gtcaagtagt acctggtgat
     2281 actttaacgt tggaagtaga aatcactaaa attaaaggac caataggtaa aggtaatgct
     2341 aaagctactg tcgatggtca acttgcttgt agttgtgaac ttacatttgc aattcaagat
     2401 gtaaaataaa acaaaaaaaa cattcaaaga tttaatgtgt tggcataatc tttgaatgtt
     2461 ttttatttta ctcttctaat ttttcatcct ttaactttgg tttagactgc atcattcgat
     2521 taaatgattt ttttaattct tcaccagata atccatcatc aataagttgt tctaataaac
     2581 tttcagcata ctgttgacgt aaagtgtaaa tatgacattc aaatacgata gacattgttg
     2641 ttttaaaatt tttaatactt ttcacagtag attcaaataa agctggatca ttggctggac
     2701 gcgtgatgac gacacgaata tccaataact gttcattgtc ttgatattcc ttaaatgttt
     2761 cataatgctc attagaaatg acaatttcaa gcaaccaacc cgtgccactt tcctctttat
     2821 taattattac gccatcttct aattcatatt ctataattct gccgtgttca ttcacaattt
     2881 gaaaccttac tgctttaaaa gttttcatat tcccacatcc cattagttta atatttatga
     2941 tttttgaatt atttagaaga tttaaggtca tttcatgact aatttcttta aatataacaa
     3001 ataacgagat gctatagcta ttaattatat aaaatttgcc attttgacca tttttaagct
     3061 agtaattaag atataggcat aggaggtgaa tcacacacta catgctaaat aaaatcgtaa
     3121 ttgtcgggag actgacgaaa gacgcacaaa tatttgaaaa ggaggataga aaaattgcaa
     3181 cgttttgtgt tgcaacgcac cgaaattata aagatgaaaa tggagaaatc gtctgtgatt
     3241 acttattctg taaagcattt ggcaagttag cttctaatat agaaaaatat actaatcaag
     3301 gtacattggt tggtataact ggtcaaatga gatcaagaaa gtatgataaa gacggacaaa
     3361 cacactttgt cactgaatta tatgttgaaa caataaaatt tatgtcccct aaatcccaaa
     3421 ataatgaaat tctctcagat agtatttaga tattgactct caaaatatag ataatcatga
     3481 cttattagaa atttaaatcc aattatccta aacatcctta atatacattt aatccatcct
     3541 aaatttttta tagatctaat taacttgaaa tatactcact taaaaacgac ttacatgact
     3601 agtactgttg tgtaggtcgt ctttttgtgt agtttttcta atagaaaata gacatagatt
     3661 gcaaaacgat tacataaaaa attgcaaata aaaaaacatt tttactgtca tgacaattct
     3721 cgatagaatc atatctgaaa ttatggggga tttcgttgta atcactgtgt aaaaaacaag
     3781 gctatttttt tattttgttg taacctgcac ggattttata gatgttacag tagtctctgt
     3841 aaaactttta gagaaacaaa ttacttgtag gaggatttta agattatgaa gaaaacatta
     3901 ctcgcatcat cattagcagt aggtttagga atcgtagcag gaaatgcagg tcacgaagcc
     3961 catgcaagtg aagcggactt aaataaagca tctttagcgc aaatggcgca atcaaatgat
     4021 caaacattaa atcaaaaacc aattgaagct ggggcttata attatacatt tgactatgaa
     4081 gggtttactt atcactttga atcagatggt acacactttg cttggaatta ccatgcaaca
     4141 ggtactaatg gagcagacat gagtgcacaa gcacctgcaa ctaataatgt tgcaccatca
     4201 gctgttcaag ctaatcaagt acaatcacaa gaagttgaag caccacaaaa tgctcaaact
     4261 caacaaccac aagcatcaac atcaaacaat tcacaagtta ctgcaacacc aactgaatca
     4321 aaatcatcag aaggttcatc agtaaatgtg aatgctcatc taaaacaaat tgctcaacgt
     4381 gaatcaggtg gcaatattca tgctgtaaat ccaacatcag gtgcagctgg taagtatcaa
     4441 ttcttacaat caacttggga ttcagtagca cctgctaaat ataaaggtgt atcaccagca
     4501 aatgctcctg aaagtgttca agatgccgca gcagtaaaat tatataacac tggtggcgct
     4561 ggacattggg ttactgcata agccatttat gcatagctaa ttaatagtta tataagtaac
     4621 ttttagattg gaatatatcg gggaattctc gatatgttcc ggttttttta tttcgcaaat
     4681 atatgtcatt atagaattat tatttaaaga taataataca actgagcaac aataattgaa
     4741 aatgttgaaa ccgtttgcta agattaattt gcaattgaat actaaggaac tactagggga
     4801 gcctaatgat atggctgaga tgaattgttc agacccttat gacctgattt ggttagtacc
     4861 aacgtaggaa agtagttatt gaagtgatgg ggctagtata gcaacattgc catcaaacta
     4921 ctttcatgtt ggaagtagtt tttttattta gggaggattt tttacaatgg aattttcaca
     4981 aaaattgtac caagctgcaa agccaatcat taatgatatt tatgaggatg actttattca
     5041 gaagatgtta tccggagata taggagctga cgcattacgc cattacttaa aagctgatgc
     5101 tgcgtattta aaagaattta caaacttata tgctttgtta attccaaaaa tgaatagcat
     5161 gaatgacgta aaatttttag tagagcaaat agaatttatg gttgaaggtg aagtacttgc
     5221 gcatgatatt ttagcgcaaa ttgttggtga atcatacgaa gaaatcatta aaacaaaagt
     5281 ttggcctcca agtggcgacc attacataaa acatatgtat ttccaagcgc atagtcgtga
     5341 aaatgctatt tatacaattg ctgcaatggc accttgtcca tatatttatg cagaattagc
     5401 taagcgctct caaagtgatc ataagcttaa tagagaaaaa gatacggcaa aatggtttga
     5461 tttttatagt actgaaatgg atgacataat taacgtattt gaggcattaa tgaataaatt
     5521 agccgaatca atgtctgaca aggaattgga acaagtaaag caagtatttt tagaaagttg
     5581 catacatgag cgtcgatttt tcaatatggc tatgacacta gaacaatggg aatttggagg
     5641 aaaagtaaat gattaaacct aaaatagcat taaccattgc aggtactgat ccaacaggtg
     5701 gtgccggcgt aatggctgat ttaaaatcat ttcattcatg tggtgtatat ggtatgggcg
     5761 tcgttacaag tattgttgct caaaatacat tgggcgtaca acatattcat aatttaaatc
     5821 atcaatgggt agatgaacaa cttgatagtg tcttcaatga taccttacct catgctatta
     5881 aaacggggat gattgctaca gcagatacta tggaaacgat tcgtcattat ttaatgcaac
     5941 atgaatctat tccatatgta attgatcctg ttatgttggc gaaaagcggt gattcattaa
     6001 tggataatga cacaaagcaa aacttgcagc atacgttatt gccattagct gacgtagtaa
     6061 caccgaattt accagaagct gaagaaataa cgggactaac cattgatagt gaagaaaaaa
     6121 ttatgcaggc tggccgcatc tttattaatg agattggtag taaaggtgtc atcattaaag
     6181 gcggtcattc aaatgatact gatatagcaa aagattattt atttactaac gaaggtgttc
     6241 aaacatttga aaatgaacga tttaaaacaa aacatacgca tggaacaggg tgtacatttt
     6301 cagcagttat aacggcagaa cttgcaaaag gtagaccatt atttgaggct gtacacaagg
     6361 ctaaaaagtt tatttcaatg agtatacaat atacgcctga aatcggccgt ggtagaggtc
     6421 cagtgaatca ttttgcatat ttaaagaaag agggattaga cgatgaatta tctaaataaa
     6481 atacgtattg aaaacccatt aacaatttgt tatacaaacg atgtagttaa aaattttaca
     6541 gcgaatggtt tattaagtat tggtgctagc cctgcaatga gtgaagctcc cgaagaagct
     6601 gaagaatttt acaaagttgc acaagcgcta ttaatcaata tcggtacttt aacagcagaa
     6661 aatgaacaag atattattgc gattgctcaa acggcaaatg aggcaggctt acctattgta
     6721 tttgaccctg tagctgttgg tgcttctaca tatcgaaagc aattttgtaa attattattg
     6781 aaatcagcga aagtatcagt aattaaaggc aatgcatctg aaatattagc gttgattgat
     6841 gatacagcaa ctatgaaagg tacagatagt gatgctaatc ttgatgcggt tgcaatagcg
     6901 aaaaaggctt acgcaacata taaaactgca atagtaatca caggtaaaga ggacgttatt
     6961 gttcaagata ataaagcctt cgtattagct aatggatctc cattattagc acgagtaact
     7021 ggagctggtt gtttattagg aggcgttatt gctggatttt tatttagaga aacagaacca
     7081 gacatagaag cgttaattga agcggtaagc gtatttaata ttgctgctga ggtagctgct
     7141 gaaaatgaaa attgtggtgg tcctggtacg ttttcaccat tgttgcttga tacgttatat
     7201 catttaaatg aaacaaccta tcaacaacgg attcgtattc aagaggtgga ataatatgtt
     7261 taaccaatcg tatctaaatg tgtattttat ttgtgggacc tccgatgttc cgagtcatcg
     7321 aactattcat gaagtattag aagcagcatt aaaggcaggg attacacttt tccaatttcg
     7381 agaaaagggt gaatcagctt taaaaggaaa cgataaactt gtattagcta aagaattaca
     7441 gcatctctgt catcaatatg atgtgccttt tatcgttaat gatgatgtat ccttggcaaa
     7501 agaaattaac gcggatggta tacatgtcgg tcaagatgat gcgaaagtca aagagatagc
     7561 acaatatttc actgataaaa ttattggact tagtattagt gatttagatg agtatgcaaa
     7621 atctgattta actcatgttg attatatagg tgttggacca atctatccta cgccgtcgaa
     7681 gcatgacgcg catataccag taggtccaga aatgattgca acgtttaaag aaatgaatcc
     7741 gcaactaccg attgtagcta ttggcggtat caatactaat aatgtggcgc cgattgtaga
     7801 agcaggtgcc aatggaattt cagtcatttc agccatttct aaaagtgaaa atattgaaaa
     7861 gactgttaat cgattcaaag atttttttaa taattagtta aatttttcca cttattgttt
     7921 catacgtact cattaatgtg atagaataaa tcctatgtga atataatgat agaggtggaa
     7981 aaatgaagaa aaaagcgtta ctaccattat ttttaggtat tatggtcttt ttggctggtt
     8041 gtgactattc taaacctgaa aaacgtagtg ggtttttcta caatacattc gtagatccaa
     8101 tgaaaaatgt attggattgg ttgggaaata acttattaaa cgacaattat ggtttagcta
     8161 ttattatcct tgtattggta attcgtatta ttttattacc attcatgttg tcaaactata
     8221 aaaatagtca tatgatgcgt caaaaaatga aagttgcaaa gccagaagtt gaaaaaattc
     8281 aagaaaaagt gaaacgtgcg cgtacacaag aagaaaaaat ggctgcaaac caagaattaa
     8341 tgcaagtata taaaaagtat gacatgaacc cgattaagag tatgttgggt tgtttaccaa
     8401 tgctaatcca attaccaatc atcatgggat tatactttgt acttaaagac caacttgtag
     8461 atggtttgtt taaatatcca cacttcttat ggttcgattt aggacgtcct gatatttgga
     8521 ttacaattat tgccggtgtt ttatacttta tccaagcata tgtatcaagt aaaacgatgc
     8581 cagacgaaca acgtcaaatg ggttacatga tgatggtcat ttcaccaatt atgattatct
     8641 ggatttcatt aagctcagca tcagcacttg gtttgtactg gtcagtcagt gcggcgttcc
     8701 ttgtagttca aacacacttt gcgaacattt attatgaaaa agtcgctaaa aaagaagtac
     8761 aacctttcat tgaagcgtat gaaagagagc acaacggcgg cagcaataaa aaaggcaaaa
     8821 acacacaagt tgtgtctaaa aagaaaaaga aataacctta gcaagtccaa ataatgtgca
     8881 ccctaaaagt tgaagataat tttaacttta tagggcgcac attatttttc gcttcaatag
     8941 cgaaacttag tgtcacatta tacaatatgt gataaataga aacagcagta agatgatttc
     9001 aaatgtgaaa gtcatcctac tgctgttttt atttgaaata atattaacga gttttcagta
     9061 tgtaaaaagt ggttaataac agagttgtca ttcttcatcg caatgtcatc ttgacacaat
     9121 gattcatcag tgtagcagta tatgtcgcaa atttccacag caattcactt atacatgtaa
     9181 cagtgtgaaa taataacgtc acaacggcat aatacacatt gcaacgtccc aacaacatat
     9241 catagaatcg taacggcatg acatcaacac caaacctggc tataacacca taacagcgca
     9301 acgccacatc atagcactac atcaagtcgc atcgtagcac cagcacatca aagtaacatg
     9361 gcatcaacat caaaccggtc tataacacca taacaccgca atgccacatc atagcactac
     9421 atcaagtcgc atcgtggtac cagcacatca aagtaacatg gcatcaacgc caaacctgtc
     9481 tataacacca taacaccgca atgccacatc atagcactac atcaagacgc atcgtggtac
     9541 cagcacatca aagtagcatg acatgtcacc aagctcccac aacaacacat caaagtaaca
     9601 tggcatgaca ccaagcttcc acaacaacac gccattacat cgcatcatca tactacaact
     9661 tcaatgtcta gtcgtgacaa ttccattccg taaaaaactg tttcaagtac atcatcataa
     9721 agtcgtgacg ttctttagca atcatcttcg ccgtatctgt atgcattaaa gattctaact
     9781 taagtaattt ttcaaagaaa tgtttaattg cagatggtgg caactgttca actaaatcat
     9841 cattaatctt atctagtgac atatgttctg tccacatagg ttcaccaaag tgtcctgcaa
     9901 attgaaatgt tcgtgcaaca cctatagcgc ctatagcatc aagacgatct gcatccctga
     9961 caatttgacc ttctaaagat aaagtgacat gatcattttt gccattgcga tagctcatat
    10021 tattaataat aaataaaatg tgctcttgat cttcggttga tagtgataaa gaagataaaa
    10081 atgacttcaa ttcaacatat tgtttgttag catctacaac tttttcgtca acggtatcat
    10141 gaagcaaaca tgcgagttca atgactaaag tatcattaac accttcattt tcagcgattg
    10201 atttagctaa agcagtgaca cgatatacat gcgcaatatc atggcctgta taatcatttt
    10261 gatgaataga ttccatatat tttttggcag cactaatgac gtctgattgt tgcattaaag
    10321 ttacactcct catatttcta ttttataaga taggtgacaa taattgtgaa ataccttctt
    10381 taaatttaat ccaaagactt cgcttagcat aacgtgcttt tgttaattca gaagatactg
    10441 ctaaatcatc tataaaagct tgttttaatt ttttggcaat ttgttggtca taaataaaag
    10501 cgttgacttc gaaattcaat gtgaaactgc gatggtccat attagctgtt cccacacttg
    10561 caatttcatc atctataaca agtgtttttg agtgtaaaaa gccattgtcg tagtgaaata
    10621 ctttaacacc ggcatctaat aaggatgctg cattttttaa agtagcccaa aaaacaaacg
    10681 gatggtcagg tttattagga atcatgatat tgacatcaac accacctaat gccgcaattt
    10741 taatagaatc taaaaaggct tgatcaggta tgaaataggg agattgaata taaatcgatt
    10801 ttttagcaga tgaaatcatt ttcaaatagc cgtatttaat ctgttcccat tcttcgtcag
    10861 gaccactaga agctatttga acgccaattg ttccaccaga atttacatct gggaaataac
    10921 gatcatcata ggagatgtgg tcacgtgtgg cttgtgaatt ccaatctaga ataaatcgta
    10981 attgcaatgc attcactgca tccccgacaa ttcgtaaatg cgtatctcgc caatagccga
    11041 atttttttga tttacctaag tactcatcac caacattaaa accaccaaca tatccaattt
    11101 gcccatctat tacaacaatt tttcgatggt ttcgattgtt catacgcaag ttaattaaag
    11161 gtaattttga tgggaaaaat gcttcagcat gtccaccttt attgcgaaac gggcgtaagc
    11221 cttttttacg cagtccacga gaacccatgt catcataaag aattttaact tctacacctt
    11281 gttccgcttt tttaccaagt tcatttaaaa tggtacgacc taattcatca ttttgaataa
    11341 tatagtactg aaaatgaata taatcagtag cattacggat gtcttgtatt aggtcatcaa
    11401 atttttcttg gccgtctgtg tatattttta aatcgttgtc tgttgttaaa aatgctgcgt
    11461 tattatataa caacatttga atcatttctt taaattttac aatttgataa ttggaatttg
    11521 aaaagttttc attttttaaa gcagctaatt gctcatcaac gattaactct aatccttttt
    11581 tatcttcctt atcaattttg aaaatttggt cacgttgaat ttgtcgtcct aatagtaagt
    11641 ataaaatgaa gccgaataaa gg
//
LOCUS       DAMQWL010000080        11488 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.080, whole genome shotgun sequence.
ACCESSION   DAMQWL010000080 DAMQWL010000000
VERSION     DAMQWL010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 11488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11488
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.080"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(78..1775)
                     /locus_tag="PF788_001899"
     CDS             complement(78..1775)
                     /locus_tag="PF788_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDG6304158.1"
                     /translation="MKQLHPNEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPD
                     DNLLGIDYVIPDYTYLVQNQDKIVGLFITHGHEDHIGGVPFLLKQLNIPIYGGPLALG
                     LIRNKLEEHHLLRTAKLNEINEDSVIKSKHFTISFYLTTHSIPETYGVIVDTPEGKVV
                     HTGDFKFDFTPVGKPANIAKMAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKI
                     FRNCKGRIIFATFASNIYRVQQAVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPP
                     ETFIEPNKINTVPKHELLILCTGSQGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPI
                     PGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGE
                     YRMLKAHGETGVECGVEEDNVFIFDIGDVLALTHDSARKAGRIPSGNVLVDGSGIGDI
                     GNVVIRDRKLLSEEGLVIVVVSIDFNTNKLLSGPDIISRGFVYMRESGQLIYDAQRKI
                     KTDVISKLNQNKDIQWHQIKSSIIETLQPYLFEKTARKPMILPVIMKVNEQKESNNK"
     gene            complement(1775..1993)
                     /locus_tag="PF788_001900"
     CDS             complement(1775..1993)
                     /locus_tag="PF788_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent RNA polymerase auxiliary subunit
                     epsilon family protein"
                     /protein_id="HDG6304159.1"
                     /translation="MAVFKVFYQHNRDEVIVRENTQSLYVEAQTEEQVRRYLKDRNFN
                     IEFITKLEGAHLDYEKENSEHFNVEIAK"
     gene            complement(2022..2144)
                     /locus_tag="PF788_001901"
     CDS             complement(2022..2144)
                     /locus_tag="PF788_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304160.1"
                     /translation="MNDMMNLVINQIVIKLHYRDDWNEFIDIYSNTILLGLTIN"
     gene            complement(2474..3025)
                     /locus_tag="PF788_001902"
     CDS             complement(2474..3025)
                     /locus_tag="PF788_001902"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDG6304161.1"
                     /translation="MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNS
                     QDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQE
                     AYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLN
                     GVMFYDHIDKDHPLQPHTDAVEV"
     gene            3390..4016
                     /locus_tag="PF788_001903"
     CDS             3390..4016
                     /locus_tag="PF788_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkyA family protein"
                     /protein_id="HDG6304162.1"
                     /translation="MKFGKTIAVVLASSVLLAGCTTDKKEIKAYLKQVDKIKDDEEPI
                     KTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSE
                     QDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLN
                     QNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVGKEKQDVDQFK"
     gene            4187..5299
                     /gene="pdhA"
                     /locus_tag="PF788_001904"
     CDS             4187..5299
                     /gene="pdhA"
                     /locus_tag="PF788_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002467471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HDG6304163.1"
                     /translation="MAPKLQAQFDAVKVLNDTQSKFEMVQILDENGNVVNEDLVPDLT
                     DEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILP
                     GYRDVPQIIWHGLPLTEAFLFSRGHFKGNQFPEGVNALSPQIIIGAQYIQAAGVAFAL
                     KKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAA
                     ETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMA
                     GDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEA
                     DNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKEKESK"
     gene            5303..6280
                     /locus_tag="PF788_001905"
     CDS             5303..6280
                     /locus_tag="PF788_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017637695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HDG6304164.1"
                     /translation="MAQMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGL
                     QKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTR
                     FRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLIS
                     SIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESM
                     KAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAE
                     LSERAILSLEAPIGRVAAADTIYPFTQAENVWLPNKNDIIEKAKETLEF"
     gene            6371..7663
                     /locus_tag="PF788_001906"
     CDS             6371..7663
                     /locus_tag="PF788_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HDG6304165.1"
                     /translation="MAFEFRLPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKS
                     VVEIPSPVSGTVEEVMVEEGTVAVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKE
                     EAPAEQAPVATQTEEVDENRTVKAMPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDA
                     YLNGGAPTASNESAASATSEEVAETPAAPAAVTLEGDFPETTEKIPAMRRAIAKAMVN
                     SKHTAPHVTLMDEIDVQALWDHRKKFKEIAAEQGTKLTFLPYVVKALVSALKKYPALN
                     TSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKARDG
                     KLTADEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPV
                     LALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLMEG"
     gene            7667..9073
                     /gene="lpdA"
                     /locus_tag="PF788_001907"
     CDS             7667..9073
                     /gene="lpdA"
                     /locus_tag="PF788_001907"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009383646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDG6304166.1"
                     /translation="MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLG
                     GVCLNVGCIPSKALLHASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGG
                     VEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQTYNFKNGIIATGSRPIEIPNFKFG
                     KRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQ
                     MTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRP
                     NTDELGLEELGVKFADRGLLEVDKQSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAE
                     AIDGQAAEVDYIGMPAVCFTEPELATVGYSEAQAKEEGLAIKASKFPYAANGRALSLD
                     DTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLG
                     EMTMEAAEKAIGYPIHTM"
     gene            9241..9516
                     /locus_tag="PF788_001908"
     CDS             9241..9516
                     /locus_tag="PF788_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0223 family protein"
                     /protein_id="HDG6304167.1"
                     /translation="MEYEYPIDLDWSNEEMISVINFFNHVEKYYESGVTAGDFMGAYK
                     RFKEIVPAKAEEKQIFNTFEKSSGYNSYKAVQDVKTHSEEQRVTAKK"
     gene            9660..10199
                     /locus_tag="PF788_001909"
     CDS             9660..10199
                     /locus_tag="PF788_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304168.1"
                     /translation="MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSM
                     ETFLNIIEVLGTTPSEFFKDSENEKVLYKKEEQVIYDEYDEGYILNWLVSKSNEYDME
                     PLILTLKPGASYKNFNPSESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRL
                     SNESNNETRILIVATASYL"
     gene            10212..11306
                     /locus_tag="PF788_001910"
     CDS             10212..11306
                     /locus_tag="PF788_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6304169.1"
                     /translation="MEPLLSLKSVSKSYDDLNILDDIDIDIESGYFYTLLGPSGCGKT
                     TILKLIAGFEYPDSGEVIYQNKPIGNLPPNKRKVNTVFQDYALFPHLNVYDNIAFGLK
                     LKKLSKTEIDQKVTEALKLVKLSGYEKRNINEMSGGQKQRVAIARAIVNEPEILLLDE
                     SLSALDLKLRTEMQYELRELQSRLGITFIFVTHDQEEALALSDFLFVLKDGKIQQFGT
                     PTDIYDEPVNRFVADFIGESNIVEGRMVRDYVVNIYGQDFECVDMGIPENKKVEVVIR
                     PEDISLIKAEEGLFKATVDSMLFRGVHYEICCIDNKGYEWVIQTTKKAEVGSEVGLYF
                     DPEAIHIMVPGETEEEFDKRIESYEEVDNA"
     gene            11299..>11488
                     /locus_tag="PF788_001911"
     CDS             11299..>11488
                     /locus_tag="PF788_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304170.1"
                     /translation="MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNY
                     QQIFTTKYLKMFAYSILYA"
BASE COUNT         4083 a         1708 c         2131 g         3566 t
ORIGIN      
        1 catatataaa gaaaaagcta ctaacaatgg gtggtgagtt taattaaaac ttcacttcaa
       61 agttagtagc tttttgatta tttattgttt gattcttttt gttcgtttac cttcataatg
      121 actggtaaaa tcattggttt tctagctgtt ttttcaaata aataaggttg taatgtttca
      181 atgatagaag atttaatctg atgccattga atatctttat tttgatttaa cttactaata
      241 acatcagttt tgattttgcg ttgtgcatca taaattaatt gacctgattc cctcatatat
      301 acaaatcctc gagaaataat gtctggacca gaaagtaatt tatttgtatt aaaatcaata
      361 ctaacaacaa cgataactaa accttcttca gataatagct tacggtctct tattacaaca
      421 ttaccgatat caccgatacc actaccatca acaagtacat taccagatgg aatgcgacca
      481 gctttacgtg ctgaatcgtg tgttaaagct aagacatctc caatatcaaa gatgaagaca
      541 ttatcttctt caacgccgca ttcaacacca gtctcaccat gtgcttttaa catacggtat
      601 tcaccatgaa taggtaagaa atatttcggc ttgattaatc gaagcattaa ttgttgatca
      661 ccttgagaac catgccctga agtatggatg ttagaaatct tgctatggat aacatctgca
      721 ccagctttat acaaggaatt aatagttctg ttaatacttt ttgtattacc tgggataggt
      781 gatgaactaa atacaacggt atcttcaggt ataattttaa tttgcttatg agtaccatta
      841 gcaattctag ataatgctgc cattggttca ccttgtgaac cagtacatag tatcaataac
      901 tcatgcttcg gtacggtatt aattttatta ggttcaataa atgtttcagg tggtgcttta
      961 atataaccaa gttccatacc tattttaata ttgttttcca tcgaacgacc gaacgtaaca
     1021 attttacggt tatttttgat agcagcttca actgcttgtt gaactcggta aatattagaa
     1081 gcgaaggtag caaatataat acgaccttta caattacgga agatcttatc tacgttttga
     1141 ccaacttcac gttcgcttaa agtaaaatca ggcacaagtg aatttgttga gtctgaaagt
     1201 aaacatagaa cgccttcttc gcctaattga gccattttag caatgtttgc tggtttgcct
     1261 acaggtgtaa aatcaaattt aaagtcaccg gtatgaacta cttttccttc aggtgtatct
     1321 acgatgacgc cataagtttc aggaatacta tgtgtagtta agtagaaaga aatcgtaaag
     1381 tgcttagatt taatcacact gtcctcattg atttcattta gtttagcagt acgtaataaa
     1441 tgatgttctt caagtttatt acggattaaa cctaatgcta aaggaccacc ataaataggt
     1501 atattaagtt gttttaatag gaagggcaca ccgcctatat ggtcttcgtg accatgtgtt
     1561 ataaataggc caacaatttt atcttggttt tgaactagat atgtgtagtc aggtataaca
     1621 taatcaatcc ctaataagtt atcatcaggg aatttgatac ctgcatcgat aatgacaatt
     1681 tcgtctttat actcaactgc ataagtattt ttaccgattt cacctagacc tccaagtgca
     1741 tatacaccta cttcatttgg atgtaattgt ttcattattt agcaatctcc acattaaagt
     1801 gttctgagtt ttctttttcg taatctaaat gtgcgccctc taatttagtg ataaattcga
     1861 tattaaaatt acgatctttc aagtaacgac gtacttgttc ttctgtttga gcttcaacat
     1921 aaagtgattg tgtattttca cgcacaatta cctcgtctct gttatgttga taaaaaactt
     1981 taaatactgc catgttaaaa attcctccta agaatgtttg tttaatttat tgttaaccct
     2041 agtaaaatcg tattggagta tatatcgata aattcattcc aatcatctct ataatgtaac
     2101 ttaataacga tttggttaat aactaggttc atcatgtcgt tcattttaaa aaattagtga
     2161 aataacacta aaatttcagt taaatcttat tttacatgat gaatgataat aaataaagca
     2221 gtttatctca ctagaaatct aagtatttcg aataaatgtg cagttctatt tattaaaata
     2281 aatgtagaga ttataaatta atgttaagaa agaattaaag gattttatat gaaacggtaa
     2341 aatttaaatg aggggataaa aagtttggta gaaaggtgaa tatatttaac tgttgtttat
     2401 tcgaaaaagt tgtaaaagga aaagcttagg acatcatatt tatcctaagc tttgataatt
     2461 agaaaaatgt gttttaaact tctactgcat ctgtatgtgg ttgtaatggg tgatctttgt
     2521 caatgtgatc atagaacatt acaccattta aatggtcaat ttcatgttgg aaaacaattg
     2581 ctggatatcc ttttagtcgt aattgtatat cattaccttc gatgtctttg gctttaattg
     2641 taattctatt atgacggtga actagaccag caacattatc atcgacacta aggcaacctt
     2701 caccagttgg taaataagct tcttgaacgc tatgacttac aatttttggg ttcacaagca
     2761 tatagtcata agatttgcca ctgccatcat ctggtattaa aacagcaatc atacgtttag
     2821 aaatattaat ttgaggtgca gccaaaccaa cgcctgaacg taaaccatat cgtttcgcga
     2881 tttcctcatc ttgactattt actaaaaact ctctcatggc gattaatgtt tctttttctt
     2941 ctttagttaa tggtaattct aactcagctg ctttttgacg caaagttgga tgaccatctc
     3001 taatgatgtc tttcattgtt aacatatatt gcaccttcct tattttaatt tgttttagtt
     3061 gaatgacagt aaaaaggttg ttaagatact catacatttt tatgtgtaaa tatctacaaa
     3121 gttaaccaac tactgccaat gtttatttta gatagtatat gtaaattttc agatatgcta
     3181 attgcttaaa aaatgattaa agtgttggtt tcaagcaatg atactttaga aatttattta
     3241 tcatcttgac tttaaaaatt atattataaa tgacgtaact gtcaacagat atacttagta
     3301 atgaagatgt gtaatgtaat tgtttaaaat tgatttccaa gcagatttta tttatcattt
     3361 aatttaaata gcaagtggag gtacaagtaa tgaaatttgg aaaaacaatc gcagtagtat
     3421 tagcatctag tgtcttgctt gcaggatgta ctacggataa aaaagaaatt aaggcatatt
     3481 taaagcaagt ggataaaatt aaagatgatg aagaaccaat taaaactgtt ggtaagaaaa
     3541 ttgctgaatt agatgagaaa aagaaaaaat taactgaaga tgtcaatagt aaagatacag
     3601 cagttcgcgg taaagcagta aaggatttaa ttaaaaatgc cgatgatcgt ctaaaggaat
     3661 ttgaaaaaga agaagacgca attaagaagt ctgaacaaga ctttaagaaa gcaaaaagtc
     3721 acgttgataa cattgataat gatgttaaac gtaaagaagt aaaacaatta gatgatgtat
     3781 taaaagaaaa atataagtta cacagtgatt acgcgaaagc atataaaaag gctgtaaact
     3841 cagagaaaac attatttaaa tatttaaatc aaaatgacgc gacacaacaa ggtgttaacg
     3901 aaaaatcaaa agcaatagaa cagaactata aaaagttaaa agaagtatca gataagtata
     3961 caaaagtact aaataaggtt ggtaaagaaa agcaagacgt tgatcaattt aaataattaa
     4021 tataatacag atggtaggaa acaactaata cagttcctat tatctgtatc tttttttatt
     4081 aaaacagaac tttttcaaat ggtttaacag tcccatttat ttgtggtaca attagtaagg
     4141 ataaaatgaa tttctataca attatgggaa aggtatggtg aattgaatgg ctcctaagtt
     4201 acaagcccaa ttcgatgcag taaaagtttt aaatgatact caatcgaaat ttgaaatggt
     4261 tcaaattttg gatgagaatg gtaacgtcgt aaatgaagac ttagtacctg atcttacgga
     4321 tgaacaatta gtggaattaa tggaaagaat ggtatggact cgtatccttg atcaacgttc
     4381 tatctcatta aacagacaag gacgtttagg tttctatgca ccaactgctg gtcaagaagc
     4441 atcacaatta gcgtcacaat acgctttaga aaaagaagat tacattttac cgggatacag
     4501 agatgttcct caaattattt ggcatggttt accattaact gaagctttct tattctcaag
     4561 aggtcacttc aaaggaaatc aattccctga aggcgttaat gcattaagcc cacaaattat
     4621 tatcggtgca caatacattc aagctgctgg tgttgcattt gcacttaaaa aacgtggtaa
     4681 aaatgcagtt gcaatcactt acactggtga cggtggttct tcacaaggtg atttctacga
     4741 aggtattaac tttgcagcag cttataaagc acctgcaatt ttcgttattc aaaacaataa
     4801 ctatgcaatt tcaacaccaa gaagcaagca aactgctgct gaaacattag ctcaaaaagc
     4861 aattgctgta ggtattcctg gtatccaagt tgatggtatg gatgcgttag ctgtatatca
     4921 agcaactaaa gaagcacgtg accgcgcagt tgcaggtgaa ggtccaacat taattgaaac
     4981 tatgacatat cgttatggtc ctcatacaat ggctggtgac gatccaactc gttacagaac
     5041 ttcagacgaa gatgctgaat gggagaaaaa agacccatta gtacgtttcc gtaaattcct
     5101 tgaaaacaaa ggtttatgga atgaagacaa agaaaatgaa gttattgaac gtgcaaaagc
     5161 tgatattaaa gcagcaatta aagaggctga taacactgaa aaacaaactg ttacttctct
     5221 aatggaaatt atgtatgaag atatgcctca aaacttagca gaacaatatg aaatttacaa
     5281 agagaaggag tcgaagtaag ccatggcaca aatgacaatg gttcaagcga ttaatgatgc
     5341 gcttaaaact gaacttaaaa atgaccaaga tgttttaatt tttggtgaag acgttggtgt
     5401 taacggcggt gttttccgtg ttactgaagg actacaaaaa gaatttggtg aagatagagt
     5461 attcgataca cctttagctg aatcaggtat tggtggttta gcgatgggtc ttgcagttga
     5521 aggattccgt ccggttatgg aagtacaatt cttaggtttc gtattcgaag tatttgatgc
     5581 gattgctgga caaattgcac gtactcgttt ccgttcaggc ggtactaaaa ctgcacctgt
     5641 aacaattcgt agcccatttg gtggtggcgt acacacacca gaattacacg cagataactt
     5701 agaaggtatt ttagctcaat ctccaggtct aaaggttgtt attccttcag gcccatacga
     5761 tgcgaaaggt ttattaattt cttctattag aagtaatgac ccagtcgtat acttagagca
     5821 tatgaaattg tatcgttcat tccgtgaaga agtacctgaa gaagaatata caattgacat
     5881 tggtaaggct aatgtgaaaa aagaaggtaa tgacatttca atcatcacat acggtgcgat
     5941 ggttcaagaa tcaatgaaag ctgcagaaga acttgaaaaa gatggttatt ctgttgaagt
     6001 aattgactta cgtactgttc aaccaatcga tgttgacaca attgtagctt cagttgaaaa
     6061 aactggtcgt gcagttgtag ttcaagaagc acaacgtcaa gctggtgttg gtgcagcagt
     6121 tgtagctgaa ttaagtgaac gtgcaatcct ttcattagaa gcacctattg gaagagttgc
     6181 agcagcagat acaatttatc cattcactca agctgaaaat gtttggttac caaacaaaaa
     6241 tgacatcatc gaaaaagcaa aagaaacttt agaattttaa tacattttaa aagttaacga
     6301 agttagcgta ttttagtctc attgattaaa atgaaatgtt taatttacga aatcttagga
     6361 gggcaaaaac gtggcatttg aatttagatt acccgatatc ggggaaggta tccacgaagg
     6421 tgaaattgta aaatggtttg ttaaagctgg agatactatt gaagaagacg atgttttagc
     6481 tgaggtacaa aacgataaat cagtagtaga aatcccatca ccagtatctg gtactgtaga
     6541 agaagttatg gtagaagaag gtacagtagc tgtagttggt gacgttattg ttaaaatcga
     6601 tgcacctgat gcagaagata tgcaatttaa aggtcatgat gatgattcat catctaaaga
     6661 agaacctgcg aaagaggaag cgccagcaga gcaagcacct gtagctactc aaactgaaga
     6721 agtagatgaa aacagaactg ttaaagcaat gccttcagta cgtaaatacg cacgtgaaaa
     6781 aggtgttaac attaaagcag tttctggatc tggtaaaaat ggtcgtatta caaaagaaga
     6841 tgtagatgca tacttaaatg gtggtgcacc aacagcttca aatgaatcag ctgcttcagc
     6901 tacaagtgaa gaagttgctg aaactcctgc agcacctgca gcagtaacat tagaaggcga
     6961 cttcccagaa acaactgaaa aaatccctgc tatgcgtaga gcaattgcga aagcaatggt
     7021 taactctaag catactgcac ctcatgtaac attaatggat gaaattgatg ttcaagcatt
     7081 atgggatcac cgtaagaaat ttaaagaaat cgcagctgaa caaggtacta agttaacatt
     7141 cttaccttat gttgttaaag cacttgtttc tgcattgaaa aaatacccag cacttaacac
     7201 ttcattcaat gaagaagctg gtgaaatcgt tcataaacat tactggaata tcggtattgc
     7261 agcagacact gatagaggat tattagtacc tgttgttaaa catgctgatc gtaagtctat
     7321 tttccaaatt tcagatgaaa ttaatgaatt agctgttaaa gcacgtgatg gtaaattaac
     7381 agccgatgaa atgaaaggtg ctacatgcac aatcagtaat atcggttcag ctggtggaca
     7441 atggttcact ccagttatca atcacccaga agtagcaatc ttaggaattg gccgtattgc
     7501 tcaaaaacct atcgttaaag atggagaaat tgttgcagca ccagtattag cattatcatt
     7561 aagctttgac cacagacaaa ttgatggtgc aactggccaa aatgcaatga atcacattaa
     7621 acgtttatta aataatccag aattattatt aatggagggg taaaacatgg tagttggaga
     7681 tttcccaatt gaaacagata ctatagtaat cggagcaggt cctggtggat acgttgcagc
     7741 aattcgtgca gctcaattag gacaaaaagt aacaatcgtt gagaaaggta atcttggtgg
     7801 tgtttgctta aacgtaggat gtattccttc aaaagcatta ctacatgctt ctcaccgttt
     7861 tgttgaagca caacattctg aaaacttagg tgttattgct gaaagtgttt ctttaaactt
     7921 ccaaaaagtt caagaattca aatcatcagt tgttaataaa ttaactggtg gtgttgaagg
     7981 cttacttaaa ggtaacaaag ttaacatcgt taaaggtgaa gcatatttcg tagataacaa
     8041 tagcttacgt gttatggacg aaaagagcgc acaaacatac aactttaaaa atggaatcat
     8101 tgcaacaggt tcaagaccaa ttgaaattcc taatttcaaa ttcggtaaac gtgttatcga
     8161 ctcaacaggt gctttaaact tacaagaagt accaggtaaa ttagttgtag ttggtggagg
     8221 atacattgga tcagaattag gtacagcatt tgctaacttt ggttcagaag taaccatcct
     8281 tgaaggtgct aaagatatct taggtggctt cgaaaaacaa atgacacaac ctgttaaaaa
     8341 aggtatgaaa gaaaaaggtg ttgaaatcgt tactgaagct atggctaaat cagctgaaga
     8401 aacagataac ggagttaaag ttacttatga agctaaaggc gaagagaaaa caatcgaagc
     8461 tgattatgta ttagtaactg taggtcgtcg tccaaacaca gacgaattag gcctagaaga
     8521 attaggtgtt aaattcgctg accgtggatt attagaagtt gataaacaaa gccgtacgtc
     8581 tatcagcaat atctatgcaa ttggtgatat cgttccaggt ttaccacttg ctcacaaagc
     8641 tagctatgaa gctaaagttg ctgctgaagc aattgatggt caagctgctg aagttgatta
     8701 cattggtatg ccagcagtat gctttactga accagaatta gctacagttg gttattcaga
     8761 agcgcaagct aaagaagaag gtttagcaat taaagcttct aaattcccat atgcagcaaa
     8821 tggtcgtgca ttatcattag atgatactaa cggatttgtt aaacttatta cacttaaaga
     8881 agatgatact ttaatcggtg ctcaagtagt tggtactggt gcatcagata ttatctctga
     8941 attaggttta gcaattgaag ctggtatgaa tgctgaagat atcgcattaa caatccatgc
     9001 acatccaaca ttaggtgaga tgactatgga agcagcagaa aaagctatcg gatacccaat
     9061 ccatacaatg taataactga ttatctataa agattcagtc attaaaagct gtagcatatg
     9121 ctacggcttt tttgttttag gtaaagtaat gtaaggaaat tgatttgaga tatcgttaac
     9181 atgtgacatg catgttatac tagcgatgct aacaaaagaa ttgaaatgga gggttcaaca
     9241 atggaatatg agtatccaat tgatttagac tggagtaatg aagagatgat ttcagtgata
     9301 aatttcttta atcatgtaga gaagtattat gaatccggcg tgacggcagg cgactttatg
     9361 ggtgcatata aaagatttaa agaaattgtg cctgctaaag cagaggaaaa acaaattttt
     9421 aatactttcg aaaaaagtag tggctataat agttacaaag cagttcaaga tgtaaaaact
     9481 cactctgaag aacaaagagt aacagctaaa aaataattcg ttcgaaatta acacaattta
     9541 ataggaattt ttctttaaaa ctattgctaa taaagctata ttttgatacc tttatcaagt
     9601 gttaaacaaa atgtttgata aaagtaaact taatatagct tttttaggtg gaaaaataaa
     9661 tgaacatagg taataaaatt aaaaatctta gaagaattaa aaatttaacg caagaagaac
     9721 ttgctgaacg tacagactta tcgaaaggct acatttcaca aatagaaagt gaacatgcct
     9781 caccaagtat ggaaactttc ttaaatatta tagaggtgtt aggaacgacg ccaagtgaat
     9841 tttttaaaga cagtgaaaat gaaaaagtat tatacaagaa ggaagaacaa gttatttatg
     9901 atgagtatga tgaaggttat atattaaatt ggttagtttc aaagtcaaat gaatatgata
     9961 tggagccatt aatattaact ttaaagcctg gagcatcata taaaaatttt aatccatcag
    10021 agtctgatac gtttatttat tgtatgtcag gtcagataac acttaattta ggcaaagaga
    10081 tatatcaagc acaagaagaa gacgttttgt attttaaagc acgagataat catcgtttgt
    10141 caaacgaatc aaacaatgaa acacgaatac ttattgtagc gacagcttca tatttatagg
    10201 ggggatctta tttggaaccg ttattatcat taaaatcagt tagtaaaagc tatgatgatc
    10261 ttaatatctt agatgacata gatattgata ttgaatcagg atacttttat acattattag
    10321 gtccttcagg ttgtggtaaa acaacaattt taaaattaat tgcagggttt gaatatcctg
    10381 acagtggtga agtgatttat caaaacaaac caattggtaa tttaccacca aataaacgta
    10441 aagtgaatac agtctttcaa gattatgcat tatttccaca cttaaacgtc tatgataata
    10501 tcgcttttgg tttgaaatta aaaaaattat caaaaaccga aattgatcaa aaagtaactg
    10561 aggcattaaa attagtaaaa ctttcaggtt atgaaaaaag aaatattaat gaaatgagtg
    10621 gcggacaaaa gcaacgtgtt gcaattgcac gtgctatcgt aaatgaacca gaaatattat
    10681 tgttagatga atctttatcc gcattagatt tgaaattgcg tactgaaatg caatatgaat
    10741 tacgagaatt gcaatctaga ttaggtatta catttatatt tgtaacacat gatcaagaag
    10801 aagcgttagc attaagtgac tttctttttg tattaaaaga tgggaaaatt caacaatttg
    10861 gcacaccaac agatatatat gacgaaccag tgaatcgatt tgtagctgat tttattggag
    10921 aatctaatat tgttgaaggg cgcatggtta gagattatgt cgtgaatatt tatgggcaag
    10981 atttcgaatg tgtcgatatg ggtattcctg aaaataaaaa agtagaagtc gttattcgac
    11041 cagaagatat atcattaatc aaagctgaag aaggattatt taaagcaact gttgattcta
    11101 tgttatttag aggggtccac tatgaaatat gttgtataga caataaaggt tatgaatggg
    11161 taatacaaac gactaaaaaa gctgaagtag gcagtgaagt tggtctttat tttgatcctg
    11221 aagccattca tattatggtt cctggagaaa cagaagaaga atttgataaa cgtattgaaa
    11281 gctatgagga agtagacaat gcgtaatact aataaatttc tcttaatccc gtatttacta
    11341 tggatggtta tatttattat tgtaccagtt gtattactca tttatttttc atttttagat
    11401 atcaatggac attttagttt cacgaattat caacaaattt ttactacaaa atatttgaaa
    11461 atgtttgcat attcaatttt atatgccg
//
LOCUS       DAMQWL010000081        11094 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.081, whole genome shotgun sequence.
ACCESSION   DAMQWL010000081 DAMQWL010000000
VERSION     DAMQWL010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 11094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11094
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.081"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(357..1109)
                     /locus_tag="PF788_001912"
     CDS             complement(357..1109)
                     /locus_tag="PF788_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-dependent peroxidase"
                     /protein_id="HDG6304171.1"
                     /translation="MSQAAETLDGWYSLHLFYAVDWASLRIVPKDERDALVTEFQSFL
                     ENTATVRSSKSGDQAIYNITGQKADLLLWFLRPEMKSLNHIENEFNKLRIADFLIPTY
                     SYVSVIELSNYLAGKSDEDPYENPHIKARLYPELPHSDYICFYPMNKRRNETYNWYML
                     TMEERQKLMYDHGMIGRKYAGKIKQFITGSVGFDDFEWGVTLFSDDVLQFKKIVYEMR
                     FDETTARYGEFGSFFVGHIINTNEFDQFFAIS"
     gene            1277..2263
                     /gene="pta"
                     /locus_tag="PF788_001913"
     CDS             1277..2263
                     /gene="pta"
                     /locus_tag="PF788_001913"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDG6304172.1"
                     /translation="MADLLNVLKDKLSGKNVKIVLPEGEDERVLTAATQLQATDYVTP
                     IVLGDETKVQSLAQKLDLDISNIELINPATSELKAELVQSFVERRKGKATEEQAQELL
                     NNVNYFGTMLVYAGKADGLVSGAAHSTGDTVRPALQIIKTKPGVSRTSGIFFMIKGDE
                     QYIFGDCAINPELDSQGLAEIAVESAKSALSFGMDPKVAMLSFSTKGSAKSDDVTKVQ
                     EAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAEKKAPGAKLQGDANVFVFPSLEAG
                     NIGYKIAQRLGGYDAVGPVLQGLNSPVNDLSRGCSIEDVYNLSIITAAQALQ"
     gene            2266..3102
                     /locus_tag="PF788_001914"
     CDS             2266..3102
                     /locus_tag="PF788_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014532577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase family protein"
                     /protein_id="HDG6304173.1"
                     /translation="MDLASKYFNGVNWRYIDHSSGLEPMQSFAFDDTFCESVGKDISD
                     NVVRTWIHQHTVILGIHDSRLPFLKDGIDYLTNEIGYNAIVRNSGGLGVVLDQGVLNI
                     SLMFKGQTETTIDEAFTVMYLLISKMFENENVDIDTMEIEHSYCPGKFDLSIDGKKFA
                     GISQRRVRGGIAVQIYLCVEGSGSERALMMQTFYEHALKGEVTKFKYPEIEPSCMASL
                     ETLLNKTITVQDVMFLLLYAIKDLGGVLNMTPITQEEWQRYDTYFDKMIERNKKMIDQ
                     MQ"
     gene            3689..4609
                     /gene="mvk"
                     /locus_tag="PF788_001915"
     CDS             3689..4609
                     /gene="mvk"
                     /locus_tag="PF788_001915"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HDG6304174.1"
                     /translation="MTRKGYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEAL
                     ESGNYSSIKSDVYDGMLYDAPDHLKSLVNRFVELNNITEPLAVTIQTNLPPSRGLGSS
                     AAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSGKPVWFQKG
                     HAETLKTLSLDGYMVVIDTGVKGSTRQAVEDVHKLCEDPQYMSHVKHIGKLVLRASDV
                     IEHHNFEALADIFNECHADLKALTVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLL
                     LAKDLPTAKNIVKAVEKAGAAHTWIENLGG"
     gene            4614..5597
                     /gene="mvaD"
                     /locus_tag="PF788_001916"
     CDS             4614..5597
                     /gene="mvaD"
                     /locus_tag="PF788_001916"
                     /EC_number="4.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HDG6304175.1"
                     /translation="MIKSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTE
                     TKVTFNDQLTQDQFWLNGEKVSGKELEKISKYMDIVRNRAGIDWYAEIESDNFVPTAA
                     GLASSASAYAALAAACNQALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGYSDE
                     TSYAVPLESNHFEDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLA
                     EAKAAIQDKDFKRLGEVIEENGLRMHATNLGSTPPFTYLVQESYDVMALVHECREAGY
                     PCYFTMDAGPNVKILVEKKNKQQIIDKLLTQFDNNQIIDSDIIATGIEIIE"
     gene            5610..6686
                     /locus_tag="PF788_001917"
     CDS             5610..6686
                     /locus_tag="PF788_001917"
                     /EC_number="2.7.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomevalonate kinase"
                     /protein_id="HDG6304176.1"
                     /translation="MIQVKAPGKLYIAGEYAVTEPGYKSVLIALDRFVTATIEETDQY
                     KGTIHSKALHHNPVTFSRDEDSIVISDPHAAKQLNYVVTAIEIFEQYAKSCDIAMKHF
                     HLTIDSNLDDSNGHKYGLGSSAAVLVSVIKVLNEFYDMKLSNLYIYKLAVIANMKLQS
                     LSSCGDIAVSVYSGWLAYSTFDHEWVKHQIEDTTVEEVLIKNWPGLHIEPLQAPENME
                     VLIGWTGSPASSPHFVSEVKRLKSDPSFYGDFLEDSHRCVEKLIHAFKTNNIKGVQKM
                     VRQNRTIIQRMDKEATVDIETEKLKYLCDIAEKYHGASKTSGAGGGDCGITIINKDVD
                     KEKIYDEWTKHGIKPLKFNIYHGQ"
     gene            6863..7204
                     /locus_tag="PF788_001918"
     CDS             6863..7204
                     /locus_tag="PF788_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1450 domain-containing protein"
                     /protein_id="HDG6304177.1"
                     /translation="MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGR
                     RKTFTFVNNRPLAALTEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKVEQDRKL
                     KEKLEKRKAQQ"
     gene            complement(7256..8578)
                     /locus_tag="PF788_001919"
     CDS             complement(7256..8578)
                     /locus_tag="PF788_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-containing oxidoreductase"
                     /protein_id="HDG6304178.1"
                     /translation="MKTYDLIVIGFGKAGKTLAKYAASTGQHVAVIEQSPKMYGGTCI
                     NIGCIPSKTLVHDGLEGKSFEASYNRKNDVVNALNNKNYHLLADDNNIDVLDFKAQFK
                     SNTEVNLLDQHDDIVDSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNISYQP
                     KHLVIVGGGYIALEFASMFANLGSKVTVLERGESFMPREDQDVVAYGITDLENKGIAL
                     HTNVETTELSSDNHHTTVHTNVDNFEADAVLLAIGRKPNTDLALENTDIELGDRGEIK
                     VNAHLQTTVPHIYAAGDVKGGLQFTYISLDDYRIIKSALYGNQSRTTDNRGSVPYTVF
                     IDPPLSRVGLTSKEAAAQHYDYTEHQLLVSAIPRHKINNDPRGLFKVVINNENNMILG
                     ATLYGKQSEELINIIKLAIDQNIPYTVLRDNIYTHPTMAESFNDLFNF"
     gene            complement(8565..9005)
                     /locus_tag="PF788_001920"
     CDS             complement(8565..9005)
                     /locus_tag="PF788_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006189740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HDG6304179.1"
                     /translation="MNLEFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTT
                     QLVDLKMIDTIRGKDGGYLANDQSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIA
                     RNIATTMSHYQQDEQNIIINFYNGKTIKDVIEDIQKEDLCHENI"
     gene            9063..9164
                     /locus_tag="PF788_001921"
     CDS             9063..9164
                     /locus_tag="PF788_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304180.1"
                     /translation="MCQYLCLKSVELGVVIVMIYCLKVDALTVRLHN"
     gene            9630..11039
                     /locus_tag="PF788_001922"
     CDS             9630..11039
                     /locus_tag="PF788_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDG6304181.1"
                     /translation="MSIDMYLDRSRNQASSVGNLSQTMNSNYDALEKAITQFINDDAL
                     KGKAYTSAKQFFSTVLIPLSTSMKTLSDLTKQACDNFVSRYTSEVDSISLKESELEED
                     IRSLSQQITRYENLNNNLKKHASDNQQAISSNQQIIRTLGQQKHELEEKLRKLREFNQ
                     KSPEIFKEVEEFQKIVQQGLTQAQNFWNFSTNQFNIPSGKELDWAKASHEKYLKVAMG
                     KIEHKAEKETLNKADFAVIKAYAKEHPEDDIPKSILKYINDNKDSIKRDIGLDITSTL
                     LEQGGINASKFGVFINTAGGVKGPAGPNSFVEVKRTSGNVFIENGSKFAKGGKYLGKG
                     VAGVGFGIGMYDDLANDDKTFGEALSHNGMTLAAGSAGTAVGAGLATFVLGSNPVGWV
                     ILAGLAMSTVFALGTDLIYQNNIFGLKDKVDWVGHKIDNSIDVVKKTTEKSMDSVGNA
                     VSEAKNIISNHINPMKWAW"
BASE COUNT         3916 a         1584 c         2131 g         3463 t
ORIGIN      
        1 ttcgacaaaa atatgtttca aatatttcaa ataggttaaa ataatattag ttaaccatta
       61 caaaaattgt atagagtagc gactgtataa tttctattga ggttaacgtt tatatgtagt
      121 gatagtagtt aaagttctcc caaggaagac tactcgggta cactttgcta tgagcaaagt
      181 gtactttgtt attgataata cattagcaca tatatataag tttaaacata cagatttcaa
      241 ctatttacca aatcacgtct tatgtatacg ggaatatact gaagataaac gaaaaattcc
      301 aagcttaaac cgataagctt ggaatttttt tattaattta taaacgtacc aatgtattaa
      361 gaaatcgcaa agaattgatc gaattcgttt gtgttaataa tatgtcctac aaagaaacta
      421 ccgaattcac cgtatcgtgc tgttgtttca tcaaagcgca tttcgtatac aatttttttg
      481 aattgtaata cgtcatctga gaacaatgtt acgccccatt cgaaatcatc aaaccctaca
      541 gaaccagtaa taaattgttt gattttgcca gcatattttc taccaatcat accatggtca
      601 tacattaatt tttggcgttc ttccatagtt aacatgtacc agttataagt ttcattacga
      661 cgtttgttca ttggatagaa acaaatataa tcagaatgtg gtaattctgg gtataatctt
      721 gctttgatat gagggttctc ataaggatct tcatcagatt taccagctaa ataattgctc
      781 aattcaatga ctgatacata tgaatatgta gggattagga agtcagcaat gcgcaatttg
      841 ttaaattcat tttcaatatg atttaaagac ttcatttcag gacgtaagaa ccataataac
      901 aaatctgctt tttgaccagt tatattataa atagcttgat caccagattt tgatgatctt
      961 acagttgctg tattttctaa aaatgattga aattcagtga caagtgcatc gcgttcgtcc
     1021 tttggaacta tacgtaatga tgcccaatca actgcataaa ataaatgtag actataccaa
     1081 ccatctaatg tttcggctgc ttgactcatg tttatcgctc cttttcaaaa atcatcagtt
     1141 ctttataaat tttatcataa agcaaagggg taacgataaa attatgatta caaattggtg
     1201 acgtggcatt atgaaataaa atggcgtata attataccgt gaatgattaa taagatttat
     1261 attacaggag gacattatgg ctgatttatt aaatgtatta aaagacaaac tttctggtaa
     1321 aaacgttaaa atcgtattac ctgaaggaga ggacgaacgt gttctaacag ctgcaacaca
     1381 attacaagca acagattatg ttacaccaat cgtgttaggt gatgagacta aggttcaatc
     1441 tttagcgcaa aaacttgatc ttgatatttc taatattgaa ttaattaatc ctgcgacaag
     1501 tgaattgaaa gctgaattag ttcaatcatt tgttgaacga cgtaaaggta aagcgactga
     1561 agaacaagca caagaattat taaacaatgt gaactacttc ggtacaatgc ttgtttatgc
     1621 tggtaaagca gatggtttag ttagtggtgc agcacattca acaggcgaca ctgtgcgtcc
     1681 agctttacaa atcatcaaaa cgaaaccagg tgtatcaaga acatcaggta tcttctttat
     1741 gattaaaggt gatgaacaat acatctttgg tgattgtgca atcaatccag aacttgattc
     1801 acaaggactt gcagaaattg cagtagaaag tgcaaaatca gcattaagct ttggcatgga
     1861 tccaaaagtt gcaatgttaa gcttttcaac aaaagggtct gctaaatcag acgacgtgac
     1921 aaaagttcaa gaagctgtca aattagcaca acaaaaagct gaagaagaaa aattagaagc
     1981 aatcattgat ggcgaattcc aatttgatgc tgcgattgta ccaggtgttg ctgagaaaaa
     2041 agcgccaggt gctaaattac aaggtgatgc aaatgtcttt gtattcccaa gtttagaagc
     2101 tggtaatatt ggttacaaaa ttgcacaacg tttaggtgga tatgatgcag ttggtccagt
     2161 attacaaggt ttaaattctc cagtaaatga cttatcacgt ggctgctcaa ttgaagatgt
     2221 atacaatctt tcaattatta cagcagcgca agccttacaa taacgatgga tttagcgagt
     2281 aaatatttta atggcgtcaa ctggcgatat atcgatcatt cttctggatt agaacctatg
     2341 caatctttcg cattcgatga tacattttgc gaaagtgtgg gcaaagatat atcagataat
     2401 gttgtgcgta cttggattca tcaacatact gttattcttg gtattcatga ttcaagattg
     2461 ccgtttttaa aagatggcat tgattattta acgaatgaga ttggttataa tgccattgtt
     2521 agaaattctg gtggcttagg tgtcgttcta gatcaaggtg tattaaatat atcgctgatg
     2581 ttcaaaggac aaacagaaac aacgattgat gaagcgttta ctgtgatgta cctcttaatt
     2641 agcaaaatgt tcgaaaatga gaatgttgat attgatacga tggaaattga acattcttat
     2701 tgcccaggaa aatttgactt aagtatcgat ggtaagaaat ttgcaggcat atcgcaacga
     2761 agagttagag gcggtattgc tgtacaaatt tatctttgtg ttgaaggctc tggttcagaa
     2821 cgtgcattga tgatgcaaac attttatgaa catgctttaa aaggtgaagt gactaaattt
     2881 aaatatcctg aaattgaacc atcttgtatg gcctcattag agacattgct taacaaaacg
     2941 attactgttc aagatgtaat gtttttacta ttatatgcaa tcaaagatct tggcggtgta
     3001 ttaaatatga cgccaattac tcaagaagaa tggcaaagat acgatacgta ttttgataaa
     3061 atgattgaaa gaaacaagaa aatgatagat caaatgcaat agttaaatat ttaacagccc
     3121 ctttcaagtt atcgtttggg gctgttattt ttgaaagtat ccataaaaag cataaatatg
     3181 ttattgacct aatatttaaa ttgaacatca ttaaattaaa agtaatgata tgatggaaat
     3241 aataaattta ataagaaaat ttcatgtttt acgtattaaa tagattgaga atagggtata
     3301 tataatgcgt atgactatga aagaaacgac cttctattga aatgttctaa tactttagta
     3361 gtaaatctat atattccaat tattatttgt agtattatag ttagggtgga aaattataaa
     3421 ttgtagggct attttataaa aagataaaga atctgaaata tcactcgata agatttaaac
     3481 tttgaagtaa acgaaagtta gttttatact aatcaagtta agtcaaatat aaattcaaaa
     3541 taaagattat acataatatg aataatgtga gataaagact gcaatgaaat ttaacgagaa
     3601 tgcgtatgca acttagaata tgatgtcttt tactaataaa taaaaataat gaatcaagta
     3661 taggataaat ataaaaggtg atattgacat gacaagaaaa ggatatgggg aatcgacagg
     3721 taagattatt ttaataggag aacatgctgt tacatttgga gagcctgcta ttgcagtacc
     3781 gtttaacgca ggtaaaatca aagttttaat agaagcctta gagagcggga actattcgtc
     3841 tattaaaagc gatgtttacg atggtatgtt atatgatgcg cctgaccatc ttaagtcttt
     3901 ggtgaaccgt tttgtagaat taaataatat tacagagccg ctagcagtaa cgatccaaac
     3961 gaatttacca ccatcacgtg gattaggatc gagtgcagct gtcgcggttg cttttgttcg
     4021 tgcaagttat gattttttag ggaaatcatt aacgaaagaa gaactcattg aaaaggctaa
     4081 ttgggcagag caaattgcac atggtaaacc aagtggtatt gatacgcaaa cgattgtatc
     4141 aggcaaacca gtttggttcc aaaaaggtca tgctgaaacg ttgaaaacgt taagtttaga
     4201 cggctatatg gttgttatag atactggtgt gaaaggttca acaagacaag cagtagaaga
     4261 tgttcataaa ctttgtgagg accctcagta catgtcacat gtaaaacata tcggtaagtt
     4321 agttttacgt gcgagtgatg tgattgaaca tcataacttt gaagccttag cggatatttt
     4381 taatgaatgt catgcggatt taaaggcgtt gacagttagt catgataaaa tagaacaatt
     4441 aatgaaaatt ggtaaagaaa atggtgcgat tgctggaaaa cttactggcg ctggtcgtgg
     4501 tggaagtatg ttattgcttg ccaaagattt accaacagcg aaaaatattg taaaagctgt
     4561 agaaaaagct ggtgcagcac atacttggat tgagaattta ggaggttaat gcgttgatta
     4621 aaagtggcaa agcacgtgca catacgaata ttgcacttat aaaatattgg ggtaaaaaag
     4681 atgaagcact aatcattcca atgaataata gcatatctgt tacattagaa aaattttaca
     4741 ctgaaacgaa agtcactttt aacgaccagt taacacagga tcaattttgg ttgaatggtg
     4801 aaaaggttag tggcaaagaa ttagagaaaa tttcaaaata tatggatatt gtcagaaata
     4861 gagctggcat cgattggtat gcagaaattg aaagcgacaa ttttgtacca acagcagcag
     4921 ggttggcttc atcggcaagc gcatatgcag ctttagcagc agcttgtaat caagcgctag
     4981 acatgcagct gtcagataag gatttatcga gattggcgcg aattggttcg ggttctgcgt
     5041 cgcgtagtat ttatggtgga tttgcagaat gggaaaaagg gtatagtgat gagacgtcat
     5101 atgccgttcc acttgaatcg aatcattttg aagatgacct tgccatgata tttgttgtga
     5161 ttaatcaaca ttctaaaaag gtacctagtc gatatggtat gtcattgaca cgaaacacat
     5221 caaggtttta tcaatattgg ttagatcata ttgatgaaga tttagctgaa gcaaaagcag
     5281 cgattcaaga caaagatttt aaacgccttg gtgaagtaat tgaagaaaat ggtttgcgta
     5341 tgcatgccac gaatctagga tcaacaccgc cgttcacata tcttgtgcaa gaaagttatg
     5401 atgtcatggc gcttgttcac gaatgccgag aagcggggta tccgtgttat tttacaatgg
     5461 atgcgggacc taatgtgaaa atacttgtag aaaagaaaaa caagcaacag attatagata
     5521 aattattaac acagtttgat aataaccaaa ttattgatag tgacattatt gccacaggaa
     5581 ttgaaataat tgagtaagga agagataaaa tgattcaggt caaagcaccc ggaaaacttt
     5641 atattgctgg agaatatgct gtaacagaac caggatataa atctgtactt attgcgttag
     5701 atcgttttgt aactgctact attgaagaaa cagaccaata taaaggtacc attcattcaa
     5761 aagcattaca tcataaccca gttacattta gtagagatga agatagtatt gtcatttcag
     5821 atccacatgc agcaaaacaa ttaaattatg tggtcacagc tattgaaata tttgaacaat
     5881 acgcgaaaag ttgcgatata gcgatgaagc attttcatct gactattgat agtaatttag
     5941 atgattcaaa tggtcataaa tatggattag gttcaagtgc agcagtactt gtgtcagtta
     6001 taaaagtatt aaatgaattt tatgatatga agttatctaa tttatacatt tataaactag
     6061 cagtgattgc aaatatgaag ttacaaagtt taagttcatg cggagatatt gctgtgagtg
     6121 tatatagtgg atggctagcg tatagtactt ttgatcatga atgggttaag catcaaattg
     6181 aagatactac ggttgaagaa gttttaatca aaaactggcc tggattgcac atcgaaccat
     6241 tacaagcacc tgaaaatatg gaagtactta tcggttggac tggctcaccg gcgtcatcac
     6301 cacactttgt tagcgaagtg aaacgtttga aatcagatcc ttcattttac ggtgacttct
     6361 tagaagattc acatcgttgt gttgaaaaac ttattcatgc ttttaaaaca aataacatta
     6421 aaggtgtgca aaagatggtg cgtcagaatc gtacaattat tcaacgtatg gataaagaag
     6481 ctacagttga tatagaaact gaaaagctaa aatatttgtg tgatattgct gaaaagtatc
     6541 acggcgcatc taaaacatca ggcgctggtg gtggagactg tggtattaca attatcaata
     6601 aagatgtaga taaagaaaaa atttatgatg aatggacaaa acatggtatt aaaccattaa
     6661 aatttaatat ttatcatggg caataaatga tttgataggg gagcaatcat ctaatttaat
     6721 tagaagataa atgctccatt ttttattgtc agccgtgtta cgtatcttga aaaaaatatt
     6781 aaaaagagta aaatagatag agttaacgaa aaaattaatg aaatcgacga tatagatatg
     6841 ataaagaaag gtgggtagca atatgaaaaa tacattcctt atttgtgatg aatgtcaggc
     6901 agtcaatata agaacgttac aaaagaagtt ggaaaaatta gatcccgatg ctgaaatcgt
     6961 gataggttgt caatcttatt gtggacctgg acgccgaaaa acattcactt ttgttaataa
     7021 ccgcccactg gctgcgctta ctgaagaaga attaatcgaa aaagtttctc aacaattaaa
     7081 gaaaccacgt gatcctgaag aagaagagcg tttaagaaaa cgacatgaag aacgtaaacg
     7141 tcgtaaagta gaacaagata gaaagcttaa agaaaaatta gaaaagcgaa aagcacaaca
     7201 ataaagcctg atggcagcat cattcaatgc gtgccaccag gtttttatgt tttgtctaga
     7261 aattaaataa atcattaaat gattcggcca tcgtaggatg cgtataaata ttatctcgta
     7321 atacggtata tggaatgttt tgatcaatcg caagtttaat tatattaatt aattcttcag
     7381 attgcttacc atataatgta gcacctaaaa tcatattatt ttcattatta atgactactt
     7441 taaataaacc tcttggatca ttgttaattt tatgacgagg tatagcactt actaaaagtt
     7501 gatgttcagt gtaatcataa tgttgagcgg cagcttcttt actagttaat ccaacacgtg
     7561 ataatggtgg atctataaat actgtataag gcacgctgcc tctattgtca gtcgtacgtg
     7621 actgattacc atataacgct gatttgataa ttcgataatc atctaaagat atatacgtaa
     7681 attgaagtcc gcctttaaca tcacctgcag cataaatatg cggcacagtt gtttgaagat
     7741 gagcattgac tttaatttcg cctctgtcgc ctaattcgat atcagtattt tctaaagcta
     7801 aatccgtatt cggtttgcgc ccgatagcca aaagtactgc atcagcctca aagttatcaa
     7861 cgttggtatg gactgttgta tgatgattgt cagatgacaa ttcagtcgtt tcaacatttg
     7921 tatgcaatgc aatgccttta ttttctaagt cagtaatacc atatgcaacg acatcttgat
     7981 cttcgcgtgg cataaatgat tcgccacgtt ctaatactgt taccttacta cctaaattcg
     8041 caaacattga agcaaattct aaggcgatat aaccgccacc tacaataacg aggtgcttag
     8101 gttgatagct aatgtttaat aaacctgtcg aatcgaagac gtgtttagct tgatcaaggc
     8161 ctttaatgtt aggaatgaca gaggtagcac cggtattaat aatgatatga ggtgcagtaa
     8221 tactatcgac gatatcgtca tgttgatcta ataaattcac ttcagtatta gatttaaact
     8281 gcgctttaaa atccagtaca tcaatgttgt tatcgtctgc taataagtgg taatttttat
     8341 tgtttagcgc attgacaaca tcgtttttac ggttataact tgcttcaaaa gatttgcctt
     8401 ctaatccatc atgtacaagt gtcttcgaag gtatacatcc tatgtttata caagtgcctc
     8461 catacatttt cggagattgt tcgataactg cgacgtgttg acctgttgat gcagcgtatt
     8521 tcgctaaagt tttaccagct ttcccaaatc ctattacaat taaatcatat gttttcatga
     8581 cataaatcct ccttttgaat gtcttcaatg acatctttga ttgtttttcc attataaaaa
     8641 ttaataatga tattctgttc gtcttgctga taatgtgaca tggtagttgc aatattacga
     8701 gcaatttgac agtgactgcc ttcgtcgcca gtaaatagac gtgtgtggtg ttctttctct
     8761 aagacaaaat gtttatataa tgttgctaga gagacatcag cactttgatc atttgctaaa
     8821 taaccgccat ctttacctcg tattgtgtca atcattttta aatcgacaag ttgagtcgtc
     8881 acgcgtcgta attgaacagg atttaaacaa gttaattctg ctaatgaact actattgaat
     8941 ttttctgaat gatgcttagt taaaaaagct aatacatgca cggcaatgtt aaattctaaa
     9001 ttcaatgttt ctcacctcat aattgtaact gtattagtta caattaaaaa tcattttgct
     9061 caatgtgtca atacttatgt ttgaaaagtg ttgaattagg tgtggttatt gtgatgattt
     9121 attgtttgaa agttgatgca ttaacggtga gattgcacaa ttgaaatttt aattatgtat
     9181 gaactgatag atatgaaatg aatattgaaa atgagagcaa taaaattttg aatgatgatg
     9241 ttgtgtgatt gtataaactt attcgtattt tagatacgtt ttgatatttc gcatgatgag
     9301 gaaatacttt taacaactga tgacatattt taatagtgaa tatattttga gatattaata
     9361 tatttaatgt taaggatgtt gtcgcaataa aattaaaata ttgaaagata atttttattg
     9421 attaattgcg aatatacaaa gacaccatta tatccatatg ctaaaataag aaaaaaggcg
     9481 acatgttatc tcaatttacc tgcatctaga ctcctttaca taagaaataa tcatcgccga
     9541 gttttaaaat tttacaactt tgtagatgta aaaagcattt gattttaaat agtttgaaaa
     9601 tcatatattt ttgaaaaagg agcatgccga tgagtattga catgtattta gacagatctc
     9661 gaaaccaagc ttcaagtgtg gggaatttga gtcaaacaat gaattcaaat tatgatgcgt
     9721 tggaaaaagc aattactcaa tttattaatg atgatgcgct taaagggaaa gcgtatacgt
     9781 cagctaagca attttttagt acggtgttaa ttccattatc aacaagtatg aaaacattga
     9841 gtgatttaac gaagcaagct tgcgataatt ttgtgtcacg ttatacgagt gaggttgata
     9901 gcatatcttt aaaagaatca gagcttgaag aagatatcag atcattaagt caacaaatta
     9961 cgcgatatga aaatttgaat aacaatttga aaaagcatgc ttccgataat cagcaagcca
    10021 tttcatcgaa ccaacaaata atacgaacat taggtcaaca aaaacatgaa ttagaagaga
    10081 agctacgcaa attgcgtgag tttaatcaaa aatcaccaga aatatttaaa gaagttgaag
    10141 aatttcaaaa aattgtccaa caaggactta cccaagcgca gaatttttgg aacttttcaa
    10201 caaatcaatt taatattcct tcaggtaaag aacttgattg ggccaaagca agtcatgaaa
    10261 aatatttgaa agttgctatg gggaaaattg aacataaagc agagaaagaa actttaaata
    10321 aagcagactt tgctgttata aaggcatatg ccaaagaaca tccagaagac gatatcccga
    10381 aaagtatatt gaaatatata aatgacaata aagacagtat taaaagagat ataggattag
    10441 atattacgtc aacactttta gagcaaggcg gtataaatgc aagtaaattc ggtgtattta
    10501 tcaatacagc aggtggagtg aaaggcccag caggtccaaa ttcatttgtg gaagtcaaac
    10561 gtacatcagg taatgtgttt atagaaaatg gtagtaaatt tgcaaaaggc ggaaaatacc
    10621 taggtaaagg tgttgctggt gtaggatttg gtataggtat gtatgatgac cttgcaaatg
    10681 atgataaaac atttggagag gcgttgtcgc ataatggtat gacgcttgca gctggatctg
    10741 cagggacagc agttggagct ggattagcga cttttgtttt aggaagtaat ccagtaggat
    10801 gggtgatttt agcaggtttg gctatgagta cagtatttgc attaggaaca gatttaattt
    10861 atcaaaataa tatttttgga ttaaaagata aagtagactg ggtagggcat aaaatcgata
    10921 atagtataga tgttgttaaa aaaactacag aaaaatccat ggatagtgtt gggaatgctg
    10981 ttagtgaagc taaaaatatt attagcaatc atataaatcc aatgaaatgg gcgtggtgag
    11041 ttttgctttt taatattaag gttattaata aaaatccgag atataaagtc gttc
//
LOCUS       DAMQWL010000082        11064 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.082, whole genome shotgun sequence.
ACCESSION   DAMQWL010000082 DAMQWL010000000
VERSION     DAMQWL010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 11064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11064
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.082"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..252)
                     /locus_tag="PF788_001923"
     CDS             complement(<1..252)
                     /locus_tag="PF788_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDG6304182.1"
                     /translation="MNILFAITGIAFALFVAFLFSFDRKKIDFKKTLIMIFIQVLIVL
                     FMMNTTIGLTILTALGSFFEGLINISKAGINFVFGDIQNK"
     gene            complement(263..1186)
                     /locus_tag="PF788_001924"
     CDS             complement(263..1186)
                     /locus_tag="PF788_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HDG6304183.1"
                     /translation="MANLQKYIEYSREVQQARENNQPIVALESTIISHGMPYPQNVEM
                     ATTVEQIIRNNGAIPATIAIIDGKIKIGLESEDLEILATSKDVAKVSRRDLAEVIAMK
                     CVGATTVATTMICAAMAGIQFFVTGGIGGVHKGAEHTMDISADLEELSKTNVTVICAG
                     AKSILDLPKTMEYLETKGVPVIGYQTNELPAFFTRESGVKLTSSVETPERLADIHLTK
                     QQLNLEGGIVVANPIPYEHALSKAYIEAIINEAVVEAENQGIKGKDATPFLLGKIVEK
                     TNGKSLAANIKLVENNAALGAKIAVAVNKLL"
     gene            complement(1161..2279)
                     /locus_tag="PF788_001925"
     CDS             complement(1161..2279)
                     /locus_tag="PF788_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HDG6304184.1"
                     /translation="MSDSEKEILKRIKDNPFISQRELAEAIGLSRPSVANIISGLIQK
                     EYVMGKAYVLNEDYPIVCIGAANVDRKFYVHKNLVAETSNPVTSTRSIGGVARNIAEN
                     LGRLGETVAFLSASGQDSEWEMIKRLSTPFMNLDHVQQFENASTGSYTALISKEGDMT
                     YGLADMEVFDYITPEFLIKRSHLLKKAKCIIVDLNLGKEALNFLCAYTTKHQIKLVIT
                     TVSSPKMKNMPDSLHAIDWIITNKDETETYLNLKIESTDDLKIAAKRWNDLGVKNVIV
                     TNGVKELIYRSGEEEIIKSVMPSNSVKDVTGAGDSFCAAVVYSWLNGMSTEDILIAGM
                     VNAKKTIETKYTVRQNLDQQQLYHDMEDYKNGKFTKVY"
     gene            complement(2622..3653)
                     /locus_tag="PF788_001926"
     CDS             complement(2622..3653)
                     /locus_tag="PF788_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000364852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDG6304185.1"
                     /translation="MDLLIGTLFLFLVLVIFTLFTYKAPNGMRAMGALANAAIATFLV
                     EAFNKYVGGEVFGIKFLEELGDAAGGLGGVAAAGLTALAIGVSPVYALVIAAACGGMD
                     LLPGFFAGYMIGYVMKYTEKYVPDGVDLIGSIVILAPLARLIAVLLTPVVNSTLIRIG
                     DIIQSSTNTNPIIMGIILGGIITVVGTAPLSSMALTALLGLTGVPMAIGAMAAFSSAF
                     MNGTLFHRLKLGDRKSTIAVSIEPLSQADIVSANPIPIYITNFFGGAIAGLIIAMSGL
                     INDATGTATPIAGFLVMFGFNHPTTIVIYGVVMAIVGALAGYLGSIVFKKYPIVTKQD
                     MINRGAVDA"
     gene            complement(3861..4538)
                     /locus_tag="PF788_001927"
     CDS             complement(3861..4538)
                     /locus_tag="PF788_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6304186.1"
                     /translation="MLKFENVTKSFKDGNRNIEAVKDTNFEINKGDIIALVGPSGSGK
                     STFLTMAGALQTPTSGHILINNQDITTMKQKALAKVRMSEIGFILQATNLVPFLTVKQ
                     QFTLLKKKNKNVMSNEDYQQLMSQLGLTSLLNKLPSEISGGQKQRVAIAKALYTNPSI
                     ILADEPTAALDTENAIEVIKILRDQAKQRKKACIIVTHDERLKAYCDRSYHMKDGVLN
                     LENETVE"
     gene            complement(4551..5600)
                     /locus_tag="PF788_001928"
     CDS             complement(4551..5600)
                     /locus_tag="PF788_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDG6304187.1"
                     /translation="MFLAWNEIRRNKLKFGLIIGVLTMISYLLFLLSGLANGLINMNK
                     EGIDKWQADAIVLNKDANQTVQQSVFNKKDIENKYKKQATLKQTGEIVSNGHQKDNVL
                     VFGVEKSSFLVPSLIEGHKATKDNEVLADETLKNKGFKIGDTLSLSQSDEKLHIVGFT
                     ESAKYNASSVIFTNDATIAKINPRLTGDKINAVVVRDTNWKDKKLNQELEAVSINDFI
                     ENLPGYKPQNLTLNFMISFLFVISATVIGIFLYVMTLQKTSLFGILKAQGFTNGYLAN
                     VVISQTVILALFGTAFGLLLTGVTGAFLPDAVPVKFDVLTLLVFAIVLMIVSVLGSLF
                     SILTIRKIDPLKAIG"
     gene            complement(5849..6739)
                     /locus_tag="PF788_001929"
     CDS             complement(5849..6739)
                     /locus_tag="PF788_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDG6304188.1"
                     /translation="MNKISKYIAIASLSVAVTVSAPQTTNSTAFAKSSAEVQQTQQAS
                     IPASQKANLGNQNIMAVAWYQNSAEAKALYLQGYNSAKTQLDKEIKKNKGKHKLAIAL
                     DLDETVLDNSPYQGYASIHNKPFPEGWHEWVQAAKAKPVYGAKEFLKYADKKGVDIYY
                     ISDRDKEKDLKATQKNLKQQGIPQAKKSHILLKGKDDKSKESRRQMVQKDHKLVMLFG
                     DNLLDFTDPKEATAESREALIEKHKDDFGKKYIIFPNPMYGSWEATIYNNNYKASDKA
                     KDKLRKNAIKQFDPKTGEVK"
     gene            7323..8630
                     /gene="brnQ"
                     /locus_tag="PF788_001930"
     CDS             7323..8630
                     /gene="brnQ"
                     /locus_tag="PF788_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDG6304189.1"
                     /translation="MKKQVIISGLMLFSLFFGAGNLIFPPMLGHTAGQNMWIGMLGFA
                     LTGILLPFITVIVVAFYDEGVESVGNRIHPWFGFIFAVVIYMSIGAFYGIPRAANVAY
                     EIGTRHILPVHNQWTLIIFAAIFFAIVYWISLNPSKIVDNLGKLLTPLLLLMVALLSI
                     AVIFNPESALSAPKDKYITHPFISGSLEGYFTMDLVAALAFSVVIVNGYKFKGLTDRM
                     KILKYVCFSGLIAAILLGMIYFALAYVGASTAPGNFKDGTDILTYNSLRLFGSFGNLV
                     FGMTVILACLTTCIGLVNACATFTKKHVPKFSYKIFALIFSIIGFLFTTLGLEMILKI
                     AVPLLTLIYPVSIALVLISFANMFSTFRFSWAYRLATVITLIISILQILNSFNLLHGV
                     ILKSFMMLPLADIDLAWLVPFMLFAIIGFIIDVFIRRPKQATT"
     gene            8867..9691
                     /locus_tag="PF788_001931"
     CDS             8867..9691
                     /locus_tag="PF788_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HDG6304190.1"
                     /translation="MKEKHIKWDKIFYGDDWVNNVVETIRTKDILQSVYLKRYLLRAM
                     MAGFIIGIITVFVLSVKATHEPDLPPGIVNMASAITFSFALVLILFTNSELLTSNFMY
                     FTVGLYYKVIKPTRVLKIFLLCFAGNILGAAILFSFMRFSNVMTPDMLNQLSAVIEHK
                     TLSTGFVSILMKAIFANFFINISLVIAMQIDDVLAKMFVMMFGVTIFAFMGYEHVVYN
                     SCLFMGGLIYQVDTLHFIPAISNIAAAFIGNYIGGGLIIGLFYAYLNDHHQFYKNN"
     gene            complement(9907..10305)
                     /locus_tag="PF788_001932"
     CDS             complement(9907..10305)
                     /locus_tag="PF788_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HDG6304191.1"
                     /translation="MEKSIKIMTIIGIVVQGLATVFSLLLMVLAASGVMTTDVSTTVN
                     GEVDPVDAETAAAIFTVLFLSLFIFGIISIILGAIGMFKASKNKKMSGILLIIGAVIS
                     GNIITFALWLISGIKLLTNNKPKDEISDLS"
     gene            complement(10458..10832)
                     /locus_tag="PF788_001933"
     CDS             complement(10458..10832)
                     /locus_tag="PF788_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4467 domain-containing protein"
                     /protein_id="HDG6304192.1"
                     /translation="MKRILVVFLMLAIILAGCSNKGEKYQKDIDKVYKEQNQMNKIAS
                     KVQNTIKTDIKQEDSNTHVYKDGKVIVIGIQLYKDREKMYYFAYEIKDGKAEINREID
                     PIKYMKDHKADYEDENVEVEKD"
BASE COUNT         3411 a         2049 c         1587 g         4017 t
ORIGIN      
        1 tttattttgt atatctccaa aaacaaaatt tatgcctgct ttactaatat ttattagccc
       61 ttcaaaaaat gaacctagtg cagttaaaat tgtcaaacca atcgttgtgt tcatcataaa
      121 taacacgatc aacacttgaa taaatatcat tattaacgtc tttttgaagt ctattttttt
      181 acgatcaaaa ctgaataaaa acgcaacaaa tagtgcaaat gctatccctg tgatagcgaa
      241 taaaatattc atgtatcatc acctacaata atttattaac agcgacagca attttagcac
      301 ccaacgccgc attgttttca acaagtttta tatttgctgc taaactttta ccattcgttt
      361 tttctacaat tttccctaac aagaacggtg tggcgtcctt acctttaata ccttgatttt
      421 ccgcttcaac aacagcttca tttatgattg cctcaatata tgcttttgat aaggcatgct
      481 catatggaat tggattagca acaacaatgc caccttcaag atttaactgc tgttttgtta
      541 aatgaatgtc agcaagtcgt tctggcgttt caaccgaact tgttaactta acaccgcttt
      601 cgcgagtgaa gaatgctggc aattcattcg tttgatatcc aataactgga acgccttttg
      661 tttctaaata ctccatcgtc ttaggtaagt ctaaaattga tttggcacct gcacagataa
      721 cagtgacatt tgttttagac agttcttcta agtctgctga aatgtccatc gtatgttctg
      781 cacctttatg gacgccccca atacctcctg taacaaaaaa ttgaatacca gccattgcag
      841 cacatatcat cgtcgtcgct acagtagtag caccaacaca cttcatcgca ataacttctg
      901 ctaaatccct tctagatact ttagcaacgt ctttactagt tgccagtatt tctaaatctt
      961 cgctttctaa accaatttta attttgccat ctataatggc tatggttgct ggaatggcac
     1021 cattattcct gataatttgc tctactgttg ttgccatttc aacattttgt gggtacggca
     1081 taccatgcga aataattgtt gattctaatg ctacaatcgg ttgattgttc tcccgtgctt
     1141 gctgaacttc tcgagaatac tcaatatact tttgtaaatt tgccattttt ataatcctcc
     1201 atatcgtgat aaagttgctg ttgatctagg ttttgcctaa ctgtatattt cgtttctatc
     1261 gttttctttg cgttaaccat accagcaatt aatatatctt cagtagacat cccatttaac
     1321 cagctataca ctactgcagc acagaatgaa tcgcctgcac ctgtaacatc tttcacacta
     1381 tttgatggca taactgactt aatgatttct tcctcaccac ttcgataaat gagttctttc
     1441 acgccatttg tcacaataac atttttaaca cctaaatcat tccagcgttt agcagctatt
     1501 tttaaatcat cagtagattc tatttttaaa tttaagtatg tttctgtttc atctttattc
     1561 gtgataatcc aatcaatagc atgtaatgaa tcaggcatat ttttcatttt tggggaagaa
     1621 accgtggtga taactaattt gatttgatgt ttcgtggtat aggcacataa gaagtttaat
     1681 gcctctttgc ctaaattcaa atctacaata atgcacttag cctttttcaa taagtgtgaa
     1741 cgcttaatta aaaattcagg cgtaatgtag tcaaacactt ccatatctgc taagccatat
     1801 gtcatgtcgc cttctttact aattaaagct gtatatgaac ctgtactcgc attttcaaat
     1861 tgttgaacat gatccaaatt cataaatggt gtggacaatc gtttaatcat ttcccattca
     1921 ctatcttgtc cactagcaga taaaaaagcg accgtttcgc caagcctacc taagttctca
     1981 gcaatatttc ttgctacgcc accaatagag cgtgttgacg ttacaggatt tgatgtttct
     2041 gcaactaaat ttttatgcac ataaaactta cgatctacat tcgctgcgcc aatacaaaca
     2101 ataggataat cttcatttaa aacatatgcc tttcccataa catattcctt ttgtattaat
     2161 cctgaaataa tgtttgctac gctgggtcta gataatccaa ttgcctcagc aagttcacgt
     2221 tgtgaaataa acggattatc tttaattctt tttaaaattt ctttctcaga atcgctcata
     2281 acatccctcc tcatattgac ttaaaatact tgaatcagtg aatttacaaa aatatcgtag
     2341 catgctgtta tttctgttgt aaacgcttac atttaccgtt atatcaatga tatttgttta
     2401 taaaatacgc ataatttcgt aaaaagtaag ttcattccat cgtgtaaaag gtacttgaga
     2461 aaatgataaa tgtttataca gtatgatatt tgtcgacaat aaattatgac atttttatgt
     2521 cttgtatttt tctataaaaa aacgtgactc attatcgact gttacatcga ctgaatcacg
     2581 ttactatgtt ttatttgttt ttactattca atatgatgat gctatgcgtc tactgcacct
     2641 cgattaatca tgtcttgctt agtaacaatt ggatattttt taaatacaat tgaaccaaga
     2701 taacctgcaa gcgcacctac aatcgccatt actacaccat aaatcacaat tgtcgtcgga
     2761 tgattaaatc caaacataac taaaaatcct gcaatcggtg tagctgtacc tgtcgcatcg
     2821 ttaattaaac ctgacatagc aataattaaa ccagcaatcg caccaccaaa gaaatttgta
     2881 atatagattg gaattggatt ggctgataca atatctgctt gtgataaagg ttcaatactt
     2941 actgcaatcg tagacttacg atcacctaat tttaagcgat ggaatagcgt cccattcata
     3001 aatgccgaac taaatgctgc catggcacca atagccatag gtacacccgt taaacctaat
     3061 aatgctgtca atgccattga actcaatggc gctgtgccga caaccgtaat aataccacct
     3121 aaaatgatac ccatgataat tggattcgta ttcgtactac tttggataat atcaccaatt
     3181 cgaatcaatg tactattcac tactggcgtt aataatactg caataagacg agctaatggc
     3241 gctaagatga caatcgatcc aattaagtcg acaccatccg gcacatattt ctctgtatat
     3301 ttcatcacat atccaatcat ataacccgca aagaaacctg gtaataaatc cataccaccg
     3361 cacgcggctg ctataactaa tgcatatact ggtgacacac cgatagctaa tgctgttaat
     3421 ccagcggcag cgacaccacc tagacctccc gcagcgtctc ctagctcttc taaaaattta
     3481 ataccgaata cttcgccacc aacatattta ttaaatgctt ccactaaaaa tgttgcgatt
     3541 gctgcattag ctaatgctcc catggcacgc ataccattag gcgctttata tgtaaataat
     3601 gtaaaaatca ctaagaccaa aaataaaaat aaagtaccta tcaataaatc cataaccatt
     3661 gacccccatt acgataattt tatattcaat ccccatattt aaatattgaa tacttagagg
     3721 ccattttact acaaaaaata ttatatttca cggaatattt ctgattttcg ataataatta
     3781 ttattaattg aatgtgaaag tttattcaaa taatacataa acataaaaat accggcacat
     3841 gatgtaccgg cttaataaaa ctattctact gtttcatttt caagattaag gacgccatct
     3901 ttcatatgat atgaacgatc acaatatgct ttaagtcgtt catcatgtgt aacaataata
     3961 catgctttct ttctttgttt ggcttgatca cgtagaattt taatgacttc aatcgcattt
     4021 tcagtatcta acgccgcggt aggttcatcc gctaaaataa tcgacggatt cgtatataac
     4081 gctttggcta tcgccacacg ttgtttctga ccacctgaaa tttctgaagg taacttatta
     4141 agcaatgaag ttagacctaa ttgtgacata agttgctgat agtcttcatt agacataaca
     4201 ttcttatttt tctttttcaa taatgtaaat tgttgcttta ccgttaaaaa tggtacaagg
     4261 tttgtagctt gtaaaataaa acctatttca gacattctaa cttttgccaa tgctttttgc
     4321 ttcattgtcg taatatcttg gttattgatt aaaatgtgcc cagatgtcgg tgtttgtaaa
     4381 gcacctgcca tagttagaaa tgtactttta ccagagccag aaggtccaac caatgctata
     4441 atatcacctt tatttatctc aaaatttgta tctttaaccg cttcaatgtt acgattccca
     4501 tctttaaatg actttgttac attttcaaat ttcaacattt gctacacctc ctacccaatc
     4561 gcctttaacg gatctatttt tctaattgtt aaaatggaga ataaacttcc taatacagag
     4621 acaatcatta acacaattgc aaatacgagc aatgttagta catcgaattt gacaggtact
     4681 gcatcaggta aaaatgcacc tgtaacgcct gttaacagta agccaaatgc cgtaccaaat
     4741 agtgctaata tgaccgtctg cgaaattacc acattcgcca aatagccatt cgtaaatcct
     4801 tgagctttta atatgccaaa taaactcgtc ttttgtaatg tcatgacata taggaaaatg
     4861 cctataactg tagctgaaat gacaaataag aatgaaatca taaagtttaa tgttaagttc
     4921 tgtggtttat aacctggtaa attttcaata aagtcattaa tacttaccgc ttcaagctct
     4981 tggtttaatt ttttgtcttt ccaatttgta tcacgtacaa caactgcatt aattttatct
     5041 ccagtcaatc taggattgat cttggcaatg gtagcgtcat tcgtgaaaat gactgatgac
     5101 gcattatatt ttgcactttc tgtaaaacct acgatatgca atttttcatc tgattgagat
     5161 agtgataatg tgtcaccaat tttaaatcct ttatttttaa gcgtttcatc agctaacact
     5221 tcattatctt tagtcgcttt atgcccttct attaaactcg gaactaaaaa tgatgacttt
     5281 tcaacaccga acactaaaac attgtctttt tgatggccat tagacacaat ttcccctgtt
     5341 tgcttcaaag tagcttgctt cttgtattta ttttcaatat ctttcttgtt aaaaacagat
     5401 tgttgcacag tttgattggc atctttattt agaacaatgg catctgcttg ccacttatca
     5461 atgccttctt tattcatatt gataagacca ttcgccaatc cagataataa aaatagcaag
     5521 taactaatca tcgttaacac accaataatt agtccaaact tcaatttgtt gcgccgtatt
     5581 tcattccaag ctaaaaacat gcatttctct ccctactact atgatttaaa cattgtttat
     5641 attcttagat gcacgtacgt cgtgttgcgc tctgtaatgt tatacataca cttatccttc
     5701 attatacccg aactttttat attaaaagca aatttatgga aaatgcaatt aattgtctat
     5761 tatttttgta cggtacattt aaaattaagg atcaatttaa aaacgcctac atataccttt
     5821 aagtacatgt agacgtccaa ttcatatatt atttaacttc gcctgtttta ggatcgaatt
     5881 gcttaatagc atttttacgt aatttatctt ttgctttgtc acttgcttta tagttattgt
     5941 tgtaaatcgt agcttcccaa ctaccataca ttgggttagg gaaaatgata tatttcttac
     6001 cgaaatcgtc tttatgtttt tcaattaatg cttcacgaga ttcagctgta gcttcttttg
     6061 gatctgtaaa gtctaataaa ttatctccaa atagcatgac aagtttatga tccttttgaa
     6121 ccatttgtct gcgtgattct ttactcttat catctttacc ttttagtaaa atatgactct
     6181 tcttagcttg agggatacct tgttgtttta agttcttttg tgttgccttt aaatcttttt
     6241 ctttatctct atcagaaata tagtagatat cgacaccttt tttgtcagca tatttcaaga
     6301 attcttttgc gccatagaca ggtttagctt tagcagcttg tacccattca tgccaacctt
     6361 ctgggaaagg tttattatgt attgatgcat agccttgata tggagaatta tctaaaactg
     6421 tttcatctaa atccaaagca atagctaact tatgtttacc tttattcttt ttaatctctt
     6481 tatctaactg tgtctttgca ctgttataac cttgtaaata taatgctttt gcttcagctg
     6541 aattttgata ccaagccact gccataatat tttgattacc aagattcgcc ttttgtgatg
     6601 ctggtataga agcttgttgc gtttgttgaa cttcagcaga acttttggca aacgctgtag
     6661 aatttgtcgt ttgtggtgct gaaactgtaa ccgctaccga taatgatgct attgcaatat
     6721 actttgaaat tttattcatc ttatcacctc atgattaata tttaaaatac agttaaaatt
     6781 ataaatgcat ttatttaata ttgctatact atgaaaagat atttaatatt atttcttgaa
     6841 aagctaacaa atatgtgaac atttcatata agcatgattt aatgggagac ctatcacatg
     6901 agagagattt gtgatttatc acgtaataaa cttaaattca tttgagtgac taggccttcc
     6961 tatcagacat attcactcat ccacgtatca ttatgtgtac agtgtgctat ctcttattta
     7021 cctattggaa caaccataaa ctcatccata gtttaccttt tataaatagc agtcctcact
     7081 catacaattt ctcataaaaa tcacaacgct ccaacgtatt tccaacttac tttcacctat
     7141 tttaattcat aaaaacgaca ctttaattgt cattatccaa taatagcaag acgttattat
     7201 tgcaatcttt tttataaaat aatagaatca tagtattgtc atttaaagat aaagtaagaa
     7261 cgtttttatt tttcagattt tttaaattat tatgaatatc tagttttagg aaggaaatta
     7321 cattgaaaaa acaagttatt atttcgggcc tcatgttatt ttcactattt tttggagccg
     7381 gaaatttaat attcccgccc atgcttggcc atacagcggg tcaaaatatg tggattggta
     7441 tgctaggctt tgcccttaca ggcatattac tcccctttat tactgttatt gttgttgcat
     7501 tttatgatga aggtgttgaa agtgtaggca atcgtataca tccatggttc gggtttattt
     7561 ttgctgtcgt gatttacatg tctatcggag cattttacgg tattccacgt gctgcaaatg
     7621 tcgcgtacga aattggtaca agacacattt tacctgtgca taaccaatgg actttaatta
     7681 tattcgcagc aatctttttt gccatcgttt actggattag tttaaatcca tcgaaaatcg
     7741 ttgataattt aggtaaatta ttaacaccgt tattactatt aatggtcgct ctattaagta
     7801 ttgctgtcat tttcaaccct gaatctgcac taagtgcacc taaggataaa tatataacac
     7861 atcctttcat ttcaggaagt ttggaaggct attttacaat ggatcttgtt gctgcgttag
     7921 ctttttccgt agtcattgtc aatggctata agtttaaagg cctcacagat cgcatgaaaa
     7981 ttttaaaata tgtctgcttt tcaggtctta ttgcagccat attacttgga atgatttact
     8041 ttgcacttgc atacgttggg gcatcaacag ctccaggaaa ctttaaagat ggtacagata
     8101 tattgacgta caactcatta cgattatttg gttcgttcgg taacctcgta tttggaatga
     8161 cggttatcct tgcatgccta acaacatgta taggactcgt caatgcttgc gccacattta
     8221 ctaagaaaca cgtacctaag ttttcttata aaatattcgc acttattttc tctatcatag
     8281 ggttcttatt tacaacactt ggtttagaaa tgattttaaa aattgctgtc ccattattga
     8341 ctttaatata tcccgtgtcg attgcacttg tactcatatc atttgctaac atgtttagca
     8401 cattcagatt cagttgggcc tatcgactcg caactgttat tacattgatt atttcaattt
     8461 tacaaatact aaatagtttc aacttattac acggtgttat tttgaaatcg tttatgatgt
     8521 tacctttagc agatatcgat ttagcttggc ttgtaccatt catgctcttt gctattatcg
     8581 gtttcataat cgatgtattt atacgccgtc cgaaacaagc gacaacttaa taaatgctca
     8641 ctgcctagta atgattgacc catcgttact aggctttttt atatgaaatt catgactttt
     8701 cagtgatacc gtctgtctat tgattatttt aaaataaatg atttgttaaa aaatcctagc
     8761 tgttattcaa aaatattagt ttttaaaatt aattttgtga aattattcac aaataaggca
     8821 attcatagta tactctgatt aacaaatgaa aagtgaggat gtcattgtga aggagaaaca
     8881 tattaaatgg gataagattt tttatgggga cgactgggta aataacgtag tcgaaacgat
     8941 aagaacaaaa gatatattac aaagcgttta tttaaaacgt tatttattac gcgcgatgat
     9001 ggcaggattt attatcggga ttattacggt cttcgtatta tcagttaaag caacacacga
     9061 accagattta ccgccaggca ttgtgaatat ggccagtgcc attacattca gctttgcgtt
     9121 agtactcatt ttatttacaa actccgaact actaaccagt aacttcatgt actttactgt
     9181 aggcctgtat tataaagtaa ttaaaccaac tagagtattg aaaatatttt tattatgctt
     9241 tgcaggaaat attttaggtg ctgctatttt atttagtttc atgcgttttt caaatgtaat
     9301 gacgccagat atgttaaatc agttatcagc agttatagag cataaaacgt tgtctactgg
     9361 ttttgtaagt atattaatga aagcgatctt cgccaatttc tttatcaata tttcattagt
     9421 tattgccatg caaattgacg atgtactcgc aaaaatgttt gtcatgatgt tcggtgttac
     9481 catattcgcc tttatgggtt atgaacacgt cgtttacaac agttgcttat ttatgggtgg
     9541 tttaatttat caagttgata cattgcactt cataccagct atttcgaata tcgctgcggc
     9601 ttttatcggt aactatattg gaggcggact cattataggt ttattctatg cttacttgaa
     9661 tgatcatcat caattttata aaaataatta actatatttg aacaatgcgt tagtcgatgc
     9721 ctttaatatt tagaagtgca ttgtctaacg tattttttta aagttcgtca atgattttta
     9781 tccgatgcta tgagcattat caaatacaaa atgctctctt aaaagcagtt attgactgaa
     9841 aatctacttc taagagagca ctttatttaa ttacttaaga aatcttgaaa tttcaatata
     9901 cgatgtttat gataagtcgc ttatttcatc tttaggcttg ttattagtaa gtagtttaat
     9961 accactgatt aaccataaag caaatgtaat tatgttacca cttattacag ctccaataat
    10021 caacaatata ccactcattt ttttgttttt agatgcttta aacataccga ttgcacctaa
    10081 aataattgaa atgattccaa atatgaatag ggataagaat aatacagtga aaattgctgc
    10141 tgctgtttct gcatcaactg ggtcaacctc accattaact gttgttgaca catctgtagt
    10201 cattacacct gatgctgcta aaaccatcaa tagtaaacta aataccgttg ctaaaccctg
    10261 aacaacaatt cctattattg tcattatttt gatcgatttt tccattgtct tactccttta
    10321 ttattattat ttacaaactt gcgtttgtgt tcttatatat aaatgtttaa atttatatcg
    10381 tgtttatttt aaaaattatt gtcgctaaag ctcatttact ttttgaaact ggttaaaagt
    10441 tttaaagaaa gcctatgtta atctttttcc acttctacat tttcatcttc ataatctgct
    10501 ttatggtctt tcatatactt aattgggtct atttctctat taatctctgc cttaccatct
    10561 tttatttcat atgcgaaata atacattttt tcacgatctt tatataattg aataccaata
    10621 acaatgactt taccatcttt ataaacatgt gtattactgt cttcttgttt aatgtctgtt
    10681 ttaatagtgt tttgtacttt cgaggcaatt ttattcattt gattctgttc tttgtacact
    10741 ttatcaatat ctttttgata cttttcacct ttattagaac aacctgccaa tataattgct
    10801 aacattaaaa atactaccaa tattcttttc atcatttttc tccttagatg gctgtcattt
    10861 tccacacact acaatactga taatatgctt tatcattgtg atgtttgaac aatgttttgc
    10921 caattgttat caacttaaaa ttcgtttaaa tgtttgacgc aagattttga ttaattatga
    10981 tattaaagtc ttcttaatat aaacatctat ttcagtgtta atttacaact atctactgaa
    11041 aattatgtca tcataataaa ttat
//
LOCUS       DAMQWL010000083        10743 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.083, whole genome shotgun sequence.
ACCESSION   DAMQWL010000083 DAMQWL010000000
VERSION     DAMQWL010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 10743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10743
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.083"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            61..1050
                     /gene="ccpA"
                     /locus_tag="PF788_001934"
     CDS             61..1050
                     /gene="ccpA"
                     /locus_tag="PF788_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HDG6304193.1"
                     /translation="MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRL
                     NYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSIISNSDNDP
                     EKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
                     FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSG
                     AESYKEGVKAFAKMKGNLPDAILCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRL
                     VEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPHRIEYRGTTK"
     gene            complement(1148..2317)
                     /locus_tag="PF788_001935"
     CDS             complement(1148..2317)
                     /locus_tag="PF788_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin utilization protein AcuC"
                     /protein_id="HDG6304194.1"
                     /translation="MQQHSSKTAYVYSDKLLQYRFHDQHPFNQMRLKLTTELLLNANL
                     LSPEQIVQPRIATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHM
                     HRHSATIVGGALTLADLIMSGKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYLA
                     KEYNQRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGY
                     GHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTL
                     HSLYEIPYFVKYLADSYTNGKVIMFGGGGYNIWRVVPRAWSHVFLSLIDQPIQSGYLP
                     LEWINKWKHYSSELLPKRWEDRLNDYTYVPRTKEISEKNKKLALHIASWYESTRQ"
     gene            complement(2342..2974)
                     /locus_tag="PF788_001936"
     CDS             complement(2342..2974)
                     /locus_tag="PF788_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDG6304195.1"
                     /translation="MNHLKTYQSEDYYIHDKQFVIEGPLTHEDLKALTFDAHLTAFRD
                     AEDQYKALLEITTLPEGRIYVARQDQLIVGYVTFHYPDEIERWSTGKLPYLIELGAIE
                     VSINFRQLQLAEKLIQLSLSTPEFENYIVITTEYYWHWDLKNSKLDVFDYKKLMQRLM
                     ATGGLEIFATDDPEITSHPANCLMARIGKNITLEQQQAFDDIRYMNRFFF"
     gene            3143..4849
                     /gene="acsA"
                     /locus_tag="PF788_001937"
     CDS             3143..4849
                     /gene="acsA"
                     /locus_tag="PF788_001937"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HDG6304196.1"
                     /translation="MKVEVYKGAQGKHNLKDYEETYNTFDWKDVEQAFSWSETGKMNM
                     AYECIDRHVDQGLGDKIALNYKDEHRKESYTYKDMQRLSNKAANVLSEHAEVDKGDRV
                     FIFMSRTPELYFALLGVLKIGAIVGPLFEAFMEKAVADRLENSEAKVLITNKALLPRV
                     PVDKLPNLKKIVVVDEDVEDNYIDFISLMETASDEFDIEWLKSDDGLILHYTSGSTGQ
                     PKGVLHVQQAMLVHYISGKYVLDLQEDDVYWCTADPGWVTGTSYGIFAPWLNGATNCI
                     AGGRFSPEQWYSMIEDFKVTIWYTAPTALRMLMSAGDDIVEKYDLSSLRSILSVGEPL
                     NPEVIKWAKKVYGLTVLDTWWMTETGGHMIVNYPTMDVKLGSMGKPLPGIQAAIIDDA
                     GNELPPNRMGNLAIKKGWPSMMYRIWKNPEKYKSYFIGDWYVSGDSAYKDEDGYFWFQ
                     GRVDDVIMTAGERVGPFEVESKLVEHEAVAEAGIIGKPDPVRGEIIKAFVALRKGYEP
                     TDELKEEIRIFVKEGLSAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELNLDAGDLST
                     ME"
     gene            5289..6956
                     /locus_tag="PF788_001938"
     CDS             5289..6956
                     /locus_tag="PF788_001938"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HDG6304197.1"
                     /translation="MTHLSDLDIANQSTLQPIKDIAASVGISEDALEPYGHYKAKIDI
                     NKITPRENKGKVVLVTAMSPTPAGEGKSTVTVGLADAFHELNKNVMVALREPALGPTF
                     GIKGGATGGGYAQVLPMEDINLHFNGDFHAITTANNALSAFIDNHIHQGNELGIDQRR
                     IEWKRVLDMNDRALRHVNVGLGGPTNGVPREDGFNITVASEIMAILCLSRSIKDLKDK
                     ISRITIGYTRDRKPVTVADLKVEGALAMILKDAIKPNLVQSIEGTPALVHGGPFANIA
                     HGCNSILATETARDLADIVVTEAGFGSDLGAEKFMDIKVREAGFDPAAVVVVATIRAL
                     KMHGGVAKDNLKEENVEAVKAGIVNLERHVNNIKKFGVEPVVAINAFIHDTDAEVEYV
                     KSWAKENNVRIALTEVWKKGGKGGVDLANEVLEVIDQPNSFKPLYELELPLEQKIEKI
                     VTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEIT
                     IRELEAKTGAGFIVALTGAIMTMPGLPKKPAALNMDVTDDGHAIGLF"
     gene            7252..9939
                     /gene="harA"
                     /locus_tag="PF788_001939"
     CDS             7252..9939
                     /gene="harA"
                     /locus_tag="PF788_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haptoglobin-binding heme uptake protein HarA"
                     /protein_id="HDG6304198.1"
                     /translation="MNKHHPKLRSFYSIRKSTLGVASVIVSTLFLITSQHQAQAAENT
                     NTSDKISENQNNNATTTQPPKDTNQTQPATQPANTAKNYPAADESLKDAIKDPALENK
                     EHDIGPREQVNFQLLDKNNETQYYHFFSIKDPADVYYTKKKAEVELDINTASTWKKFE
                     VYENNQKLPVRLVSYSPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDYTKLV
                     FAKPIYNDPSLVKSDTNDAVVTNDQSSSVASNQTNTNTSNQNTSTINNANNQPQATTN
                     MSQPAQPKSSTNADQASSQPAHETNSNGNTNDKTNESSNQSDVNQQYPPADESLQDAI
                     KNPAIIDKEHTADNWRPIDFQMKNDKGERQFYHYASTVEPATVIFTKTGPIIELGLKT
                     ASTWKKFEVYEGDKKLPVELVSYDSDKDYAYIRFPVSNGTREVKIVSSIEYGENIHED
                     YDYTLMVFAQPITNNPDDYVDEETYNLQKLLAPYHKAKTLERQVYELEKLQEKLPEKY
                     KAEYKKKLDQTRVELADQVKSAVTEFENVTPTNDQLTDLQEAHFVVFESEENSESVMD
                     GFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKNNSRTLIFPYIP
                     DKAVYNAIVKVVVANIGYEGQYHVRIINQDINTKDDDTSQNNTSEPLNVQTGQEGKVA
                     DTDVAENSSTATNPKDASDKADVIEPESDVVKDADNNIDKDVQHDVDHLSDMSDNNHF
                     DKYDLKEMDTQIAKDTDRNVDKDADNSVGMSSNVDTDKDSNKNKDKVIQLNHIADKNN
                     HTGKAAKLDVVKQNYNNTDKVTDKKTTEHLPSDIHKTVDKTVKTKEKAGTPSKENKLS
                     QSKMLPKTGETTSSQSWWGLYALLGMLALFIPKFRKESK"
     gene            10070..10162
                     /locus_tag="PF788_001940"
     CDS             10070..10162
                     /locus_tag="PF788_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304199.1"
                     /translation="MKIILLLFLIFGFIVVVTLKSEHQLTLFSI"
     gene            complement(10142..>10743)
                     /locus_tag="PF788_001941"
     CDS             complement(10142..>10743)
                     /locus_tag="PF788_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HDG6304200.1"
                     /translation="SSPNVIKALTSSEDTLFYKHDGILPKAILRAMIQDIFNTDQSSG
                     GSTITQQLVKNQVLTNEKTYSRKANELRLAIRLEHLLSKDEIIYTYLNIVPFGRDYNG
                     ANISGIASASYSLFGIPPKDLSIAQSAYLIGLLQSPYGYTPYEKDGTLKSDKDLKYSI
                     QRQHYVLKRMLIEDQITEKEYNDALKYDIKSHLLNRKKR"
BASE COUNT         3881 a         1594 c         2019 g         3249 t
ORIGIN      
        1 tatgaaaatg aaatgaaaac atgttattat aatgaataaa acgtttacaa ggaggaaatt
       61 atgacagtta ctatatatga tgtagcaaga gaagcgcgtg tctctatggc cacagtgtcg
      121 cgtgttgtta atgggaacca aaatgttaaa gcagaaacta aaaataaagt taacgaagtc
      181 attaagcgtt tgaattatcg tccaaatgct gttgctagag gtttagctag taaaaagaca
      241 acaacagtag gtgtgatcat tccagatata tctaatatct attattcaca acttgctcgt
      301 ggacttgaag atattgcaac aatgtataaa tatcactcaa ttatttcaaa ttcagataac
      361 gatcctgaaa aggaaaaaga aatttttaat aacttattaa gtaaacaggt tgatggtatt
      421 attttccttg gtggtacaat tactgaagaa atgaaagaat tgataaatca atcatctgta
      481 cctgtagtag tatcaggaac aaatggtaag gatgcacata tagcatcagt taatattgat
      541 tttactgaag ctgcgaaaga aattacggga gaattaattg aaaaaggcgc taaatcattt
      601 gctttagtag gtggagaaca ttctaaaaaa gctcaagaag atgttttaga aggtttaact
      661 gaagtgttaa ataaaaatgg ccttcaatta ggtgatacat tgaattgttc tggtgctgaa
      721 agttataaag aaggcgtaaa agcttttgcc aaaatgaaag gcaatttgcc agatgccatt
      781 ttatgtatca gcgacgaaga agcaattggt attatgcata gtgcaatgga tgctggtatt
      841 aaagttccag aggaattaca aattattagt ttcaataata cacgattagt tgagatggtt
      901 agaccacaac tttctagtgt tattcaacca ttatatgata tcggtgcagt agggatgcgc
      961 ttattaacaa aatatatgaa cgatgaaaag atagaagaac caaatgtagt tttacctcac
     1021 agaattgaat accgaggaac tacaaaataa attcacaaaa ttaggcattc atctaacgac
     1081 ccaaattata tgggtgttgg aagaatgcct tttatttatc ttttaaaatc gttgcagatt
     1141 aggttactta ttgacgagta gattcgtacc aactcgctat atgtaaagct aattttttat
     1201 ttttttcact aatttctttt gtgcggggga cataggtata atcatttaaa cgatcttccc
     1261 atcttttagg taataattca gatgaataat gtttccattt attaatccat tctaacggta
     1321 aataaccact ttgaattggt tgatcaatta aacttaagaa tacatgactc catgcacgtg
     1381 gtacgactct ccaaatattg tagcctccgc caccaaacat aattaccttt ccattcgtat
     1441 aagaatcagc taaatatttt acaaaatatg gaatttcata taatgaatgt aacgtacaat
     1501 ttagatgagt tagtggatca cgataatgta tatcgacacc atttacgctt agaataatat
     1561 caggtttaaa actctttacg acaggctcaa ctgttaattt aaaacactcc aaaaatgatg
     1621 catcttctgt atacggttca agtgggacat ttacagtgtg tccatagccg atatcttcac
     1681 cgcgctcagt atagtgacca gagcctggga aaagaaattt tccggtttca tggatagaat
     1741 aagtagtaac atggttatcg gcatagaaac tccattgtgt accatctcca tgatgtgcat
     1801 cggtatctat gattaaaacg cgttgattgt attctttagc taagtattgt gcggtaattg
     1861 caatatcatt gtatatacaa aaaccacttg ctcgaccagg ttgagcgtga tgcaaaccac
     1921 cacctaagtg acaaccattt aatactttgc ctgacataat aagatctgct aaagttaaag
     1981 cgcctccaac aattgtggca ctatggcggt gcatatgctt aaattgacca ttctcttcat
     2041 catttaatcc atatttctta gcctcatctt cactgataat gccatgtgaa gcatgcttaa
     2101 tagcttcgac gtaatcatat ttatgaatta acattaattc gtcatctgtt gcaattctag
     2161 gttgtactat ttgttctgga gacaataaat ttgcattcaa aagtagctct gttgttaatt
     2221 ttaaacgcat ttgattgaag ggatgttggt catgaaatcg atattgtaat aacttatctg
     2281 aataaacata tgcagttttt gatgaatgtt gttgcatata atccctccga tattccaaaa
     2341 attaaaagaa aaaccgattc atataacgaa tatcatcaaa cgcttgttgc tgttctaatg
     2401 taatgttttt gccaattctt gccattaaac aattagctgg atgacttgtt atttctggat
     2461 catctgtagc gaatatttca agtccaccag ttgccattaa ccgctgcatt aattttttat
     2521 agtcaaatac atctaacttt gaatttttta aatcccaatg ccagtaatat tctgtagtta
     2581 taacgatata attctcgaat tctggtgtag aaaggctaag ttgtatcagc ttttctgcaa
     2641 gttgtaattg cctaaaattg atgctgactt caattgcccc caattcgatt aaatatggaa
     2701 gcttacctgt agaccagcgc tcaatttcat caggatagtg gaaagtgaca taacccacaa
     2761 tgagttgatc ttggcgagca acataaattc taccttctgg taatgttgta atttctaaca
     2821 aagctttata ctgatcttca gcatctctaa atgcggttaa atgcgcatcg aaagtaagcg
     2881 ctttcaaatc ttcgtgtgtt aaaggacctt caataacaaa ttgcttgtca tgaatgtaat
     2941 aatcttcgga ttgatacgtc tttaaatgat tcatattttc aactcctcaa tcgacgtcgt
     3001 gattgtatta aattcattat atagaaaatt tacaataatt aatactagaa aaaggataaa
     3061 agtaaaaatt ttgaataatt agaaatgtta tgtataatat tgagaaagaa agcgttttca
     3121 cataacaaag ggggagtttc aaatgaaagt cgaagtttat aaaggagcgc aaggtaaaca
     3181 taaccttaaa gattatgaag aaacatataa tacttttgat tggaaagacg tagaacaagc
     3241 attttcttgg agtgaaactg gaaaaatgaa catggcatat gaatgcatag atcgccatgt
     3301 agatcaagga ttaggggata aaatagcgtt aaattacaaa gatgagcaca gaaaagaatc
     3361 gtatacttat aaagatatgc aacggttatc taataaagca gcgaatgttt tgtctgaaca
     3421 tgcagaagtt gacaaaggtg acagagtatt tatatttatg tcgcgtacac ctgaactata
     3481 ttttgcgttg ttaggtgttt taaaaattgg tgcaattgtt gggccgttat ttgaagcatt
     3541 tatggaaaag gcagttgcgg atagattaga gaacagtgaa gctaaagtgt taattactaa
     3601 taaggcattg ttacctcgag tacctgtaga taaattacca aacttgaaaa aaattgttgt
     3661 cgtagatgag gatgtagaag acaattacat agacttcatt agtttgatgg aaactgctag
     3721 cgatgaattt gacattgaat ggttaaagtc ggatgatggt ttgattttac attatacatc
     3781 aggttctact gggcaaccta aaggtgtatt gcatgttcaa caagcaatgt tagtgcacta
     3841 tatttctgga aaatatgtat tagatttaca agaagatgat gtttattggt gtacagcaga
     3901 tccaggttgg gttacaggaa catcttatgg tatttttgca ccatggttaa atggcgctac
     3961 aaattgtata gctggtggtc gcttttcgcc agaacagtgg tatagtatga ttgaagattt
     4021 taaagtgacg atttggtata cggcaccaac agctttaaga atgttaatga gtgctggtga
     4081 cgatattgtt gagaaatatg acttgtcatc gttacgttcg attctatcag taggtgagcc
     4141 tttaaatcct gaagttataa aatgggcgaa aaaagtatac ggtttaacgg tgttagatac
     4201 ttggtggatg acagaaacag gtggacatat gattgttaac tatccaacga tggacgtcaa
     4261 gcttggctca atgggcaaac cattacctgg tattcaagct gcaattatcg atgatgcagg
     4321 gaatgaatta ccaccaaatc gaatgggcaa ccttgctata aaaaaaggct ggccatcaat
     4381 gatgtatcgt atctggaaga atccagaaaa atataaatca tattttattg gagactggta
     4441 tgtatctggt gattcggcat ataaagatga agatggttac ttctggttcc aaggacgtgt
     4501 tgatgatgta attatgacag ctggtgaacg agttggacca tttgaggttg agtctaaatt
     4561 ggttgaacac gaagcagttg ccgaagcagg aattattggt aaacctgatc cggttcgcgg
     4621 tgaaataatt aaggcgtttg ttgcactgag aaaaggatat gaaccaacag acgaattaaa
     4681 agaagaaatt cgtatatttg ttaaagaagg tttgtcggca catgcagcac cacgtgaaat
     4741 cgaatttaaa gataaattac ctaaaacacg gtcaggtaaa attatgagac gtgtattaaa
     4801 agcttgggaa ttaaatttag atgctgggga tttaagtaca atggaataat gacatgaatg
     4861 ttattgaaga tttttttcga agaataaagg gtgacaacat atttcatgtc aatgtttaaa
     4921 taatcgttta ctttacgata agcaatataa agaactgtta acttgtgtca tatcatttcg
     4981 tagaaagcat ttgaaaatga tgacataaca ataatggcat atctttatat tgctttttat
     5041 ttttaatatg atctttggaa gatgattatt ttaaataata gaaaaatata gttatcaata
     5101 gtatcaagcg ctaaaagttg tataatacaa aactttaata agtgaattta ttgcaaaaat
     5161 gaaagcgcta acccgattta gtcgacaagt ttttaacagt tcgttattat atgaatgtaa
     5221 gtaaaaattt cttagctaca acttacatat tataaatgca taaattaaac aaaaaggggc
     5281 gaaaaaagtt gactcattta tcagatttag atattgcgaa tcaatcaaca ctacaaccaa
     5341 ttaaggatat tgctgcatca gtaggtattt cagaggatgc attagaacct tatggtcatt
     5401 acaaagctaa aatcgacatt aataaaatta cgccaagaga aaacaaaggg aaagttgttt
     5461 tagtaactgc gatgagccca acaccagctg gtgaaggtaa atcaacggtt acagttggtt
     5521 tagctgatgc attccatgag ttaaataaaa acgttatggt tgcattaaga gagcctgctt
     5581 taggaccaac atttggtatc aaaggtggtg cgactggtgg tggttatgcg caagtcttac
     5641 ctatggaaga tatcaactta catttcaacg gagatttcca tgcgattaca actgcaaata
     5701 atgcattgtc tgcgtttatc gataatcata ttcaccaagg taacgaatta ggaatcgatc
     5761 aaagacgtat tgagtggaaa cgtgtattag atatgaatga tcgtgcactt agacatgtaa
     5821 acgttgggtt aggtggacct acaaatggtg taccacgtga agatggcttt aatattacag
     5881 tagcgtctga aattatggcg attttatgtt taagtagaag tattaaagac ttaaaagata
     5941 aaattagtcg tattactatt ggttacacta gagatcgcaa gccagttaca gttgcagatt
     6001 taaaagtgga aggtgcactt gcaatgattt taaaagatgc aataaaacca aacttagtac
     6061 aatcaattga agggacacct gcattagttc atggtggacc atttgcgaat atcgcacacg
     6121 gttgtaactc aattttagca actgaaacag cacgtgattt agctgatatc gttgtaacgg
     6181 aagctggatt tggttcagac ttaggcgctg aaaaattcat ggacattaaa gtgcgtgaag
     6241 caggatttga tccggcagct gtcgttgttg ttgcgacaat tcgtgcgtta aaaatgcatg
     6301 gtggtgtagc gaaagataat ttaaaagaag aaaatgtaga agcagtaaaa gcaggaattg
     6361 ttaatttaga gcgtcatgtt aataatatta aaaaattcgg tgtagaaccg gttgttgcaa
     6421 ttaatgcatt tatacatgat accgatgcag aagtagaata tgtaaaatct tgggctaaag
     6481 aaaataacgt acgaattgcc ttaactgaag tttggaaaaa aggtggtaaa ggtggcgttg
     6541 acttagcaaa tgaagtatta gaagtcattg atcaacctaa ttcatttaaa cctttatatg
     6601 aattagaatt accattagag caaaagattg aaaagattgt gactgaaatc tatggcggtt
     6661 caaaagtaac gtttagcagt aaagcgcaaa aacaattaaa acaatttaaa gaaaatggtt
     6721 gggataatta cccagtatgt atggcgaaaa cacaatattc attctcagat gatcaaacgt
     6781 tgttaggtgc accatcagga tttgaaatta caattcgtga attagaagcg aaaacaggtg
     6841 caggatttat cgtagcgttg acaggtgcaa tcatgactat gcctggttta cctaaaaaac
     6901 cagcagcatt aaacatggat gttactgatg atggtcatgc aattgggtta ttctaataaa
     6961 tcatgtcaat tgtttaataa agataagtaa atagtttaat agaccggact gttggagatg
     7021 cattatttca gcagttcggt tttttgctgt gctaaaaata gattcaattt ggcgaatcta
     7081 acgacaatgt ttgaaggtgg ttaattaatg tatatgaaga taaaaagtgg gcttgaagaa
     7141 taggaaagcg atgcaatgaa tattccatat taaaaaaaaa taataaaata ggttgcaata
     7201 tttaattggg atgcgctaca attaacacta ataataggag ttgttaacaa catgaacaaa
     7261 catcacccaa aattaaggtc tttctattct attagaaaat caactctagg cgttgcatcg
     7321 gtcattgtca gtacactatt tttaattact tctcaacatc aagcacaagc agcagaaaat
     7381 acaaatactt cagataaaat ctcggaaaat caaaataata atgcaactac aactcagcca
     7441 cctaaggata caaatcaaac acaacctgct acgcaaccag caaacactgc gaaaaactat
     7501 cctgcagcgg atgaatcact taaagatgca attaaagatc ctgcattaga aaataaagaa
     7561 catgatatag gtccaagaga acaagtcaat ttccagttat tagataaaaa caatgaaacg
     7621 cagtactatc actttttcag catcaaagat ccagcagatg tgtattacac taaaaagaaa
     7681 gcagaagttg aattagacat caatactgct tcaacatgga agaagtttga agtctatgaa
     7741 aacaatcaaa aattgccagt gagacttgta tcatatagtc ctgtaccaga agaccatgcc
     7801 tatattcgtt tcccagtttc agatggcaca caagaattga aaattgtttc ttcgactcaa
     7861 attgatgatg gagaagaaac aaattatgat tatactaaat tagtatttgc taaacctatt
     7921 tataacgatc cttcacttgt aaaatcagat acaaatgatg cagtagtaac gaatgatcaa
     7981 tcaagttcag tcgcaagtaa tcaaacaaac acgaatacat ctaatcaaaa tacatcaacg
     8041 atcaacaatg ctaataatca accgcaggca acgaccaata tgagtcaacc tgcacaacca
     8101 aaatcgtcaa cgaatgcaga tcaagcgtca agccaaccag ctcatgaaac aaattctaat
     8161 ggtaatacta acgataaaac gaatgagtca agtaatcagt cggatgttaa tcaacagtat
     8221 ccaccagcag atgaatcact acaagatgca attaaaaacc cggctatcat cgataaagaa
     8281 catacagctg ataattggcg accaattgat tttcaaatga aaaatgataa aggtgaaaga
     8341 cagttctatc attatgctag tactgttgaa ccagcaactg tcatttttac aaaaacagga
     8401 ccaataattg aattaggttt aaagacagct tcaacatgga agaaatttga agtttatgaa
     8461 ggtgacaaaa agttaccagt cgaattagta tcatatgatt ctgataaaga ttatgcctat
     8521 attcgtttcc cagtatctaa tggtacgaga gaagttaaaa ttgtgtcatc tattgaatat
     8581 ggtgagaaca tccatgaaga ctatgattat acgctaatgg tctttgcaca gcctattact
     8641 aataacccag acgactatgt ggatgaagaa acatacaatt tacaaaaatt attagctccg
     8701 tatcacaaag ctaaaacgtt agaaagacaa gtttatgaat tagaaaaatt acaagagaaa
     8761 ttgccagaaa aatataaggc ggaatataaa aagaaattag atcaaactag agtagagtta
     8821 gctgatcaag ttaaatcagc agtgacggaa tttgaaaatg ttacacctac aaatgatcaa
     8881 ttaacagatt tacaagaagc gcattttgtt gtttttgaaa gtgaagaaaa tagtgagtca
     8941 gttatggacg gctttgttga acatccattc tatacagcaa ctttaaatgg tcaaaaatat
     9001 gtagtgatga aaacaaagga tgacagttac tggaaagatt taattgtaga aggtaaacgt
     9061 gtcactactg tttctaaaga tcctaaaaat aattctagaa cgctgatttt cccatatata
     9121 cctgacaaag cagtttacaa tgcgattgtt aaagtcgttg tggcaaacat tggttatgaa
     9181 ggtcaatatc atgtcagaat tataaatcag gatatcaata caaaagatga tgatacatca
     9241 caaaataaca cgagtgaacc gctaaatgta caaacaggac aagaaggtaa ggttgctgat
     9301 acagatgtag ctgaaaatag cagcactgca acaaatccta aagatgcgtc tgataaagca
     9361 gatgtgatag aaccagagtc tgacgtggtt aaagatgctg ataataatat tgataaagat
     9421 gtgcaacatg atgttgatca tttatccgat atgtcggata ataatcactt cgataaatat
     9481 gatttaaaag aaatggatac tcaaattgcc aaagatactg atagaaatgt ggataaagat
     9541 gccgataata gcgttggtat gtcatctaat gtcgatactg ataaagactc taataaaaat
     9601 aaagacaaag tcatacagct gaatcatatt gccgataaaa ataatcatac tggaaaagca
     9661 gcaaagcttg acgtagtgaa acaaaattat aataatacag acaaagttac tgacaaaaaa
     9721 acaactgaac atctgccgag tgatattcat aaaactgtag ataaaacagt gaaaacaaaa
     9781 gaaaaagccg gcacaccatc gaaagaaaac aaacttagtc aatctaaaat gctaccaaaa
     9841 actggagaaa caacttcaag ccaatcatgg tggggcttat atgcgttatt aggtatgtta
     9901 gctttattca ttcctaaatt cagaaaagaa tctaaataat taactaaata tagcatatgt
     9961 atgattaact ttgtagacaa tgtgaaagca attaatttat aaactattga ttggtttaat
    10021 ggctttcctt tagagtaaat aaaaagaaca gcagtgagaa attttctaat tgaaaataat
    10081 cttactgctg tttttaatat ttggattcat tgttgtggtt actttaaaaa gtgagcatca
    10141 attaacgctt ttttcgattt aacaaatgtg atttaatatc atattttaat gcgtcgttgt
    10201 attctttttc agtgatttga tcttcgatta acatacgctt taatacataa tgttgtcttt
    10261 gaatactata tttcaaatct ttatccgatt ttaacgttcc atctttttcg tagggtgtat
    10321 agccatatgg gctttgcaac aaaccgataa ggtatgcaga ttgtgcaatt gataaatctt
    10381 ttggtggaat accaaataga ctatatgaag cggatgcaat tccggaaata ttagcgccat
    10441 tataatctct accgaaggga actatattta aatatgtata tataatttca tcttttgaga
    10501 gtaggtgttc taatctaatt gctaggcgaa gttcatttgc ttttctacta tatgtttttt
    10561 cgttggtaag aacttgattt ttaacaagtt gttgtgtaat tgtgctacca cctgaacttt
    10621 gatcagtatt aaaaatatct tgtatcattg ctcttaaaat cgcctttggt aagatgccat
    10681 catgtttata aaataaagtg tcttcagatg acgttaatgc tttaatgaca tttggacttg
    10741 atg
//
LOCUS       DAMQWL010000084        10669 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.084, whole genome shotgun sequence.
ACCESSION   DAMQWL010000084 DAMQWL010000000
VERSION     DAMQWL010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 10669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10669
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.084"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(90..3263)
                     /gene="carB"
                     /locus_tag="PF788_001942"
     CDS             complement(90..3263)
                     /gene="carB"
                     /locus_tag="PF788_001942"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDG6304201.1"
                     /translation="MPKRNDIKTILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYRV
                     ILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTGLNMAIQL
                     HESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIVNTVEQAFKFKE
                     QVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKSIAGFKEIEY
                     EVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVSLKVIRALG
                     IEGGCNVQLALDPHSFDYYIIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEM
                     LNPITGTSYAAFEPTLDYVISKIPRFPFDKFEKGERELGTQMKATGEVMAIGRTYEES
                     LLKAIRSLEYGVHHLGLPNGESFDLDYIKERISHQDDERLFFIGEAIRRGTTLEEIHN
                     MTQIDYFFLHKFQNIIDIEHQLKEHQGDLEYLKYAKDYGFSDKTIAHRFNMTEEEVYQ
                     LRMENDIKPVYKMVDTCAAEFESSTPYYYGTYETENESIVTDKEKILVLGSGPIRIGQ
                     GVEFDYATVHAVWAIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINL
                     EKPKGVVVQFGGQTAINLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQP
                     QGKTATSPEEALANAAEIGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEH
                     PVLVDRYLTGKEIEVDAICDGETVIIPGIMEHIERAGVHSGDSIAVYPPQTLTEDELA
                     TLEDYTIKLAKGLNIIGLINIQFVIAHDGVYVLEVNPRSSRTVPFLSKITDIPMAQLA
                     MRAIIGEKLTDMGYQEGVQPYAEGVFVKAPVFSFNKLKNVDITLGPEMKSTGEVMGKD
                     TTLEKALFKGLTGSGVEVKDHGTVLMTVSDKDKEEVVKLAQRLNEVGYKILATSGTAN
                     KLAEYDIPAEVVGKIGGENDLLTRIQNGDVQIVINTMTKGKEVERDGFQIRRTTVENG
                     IPCLTSLDTANALTNVIESMTFTMRQM"
     gene            complement(3256..4356)
                     /gene="carA"
                     /locus_tag="PF788_001943"
     CDS             complement(3256..4356)
                     /gene="carA"
                     /locus_tag="PF788_001943"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDG6304202.1"
                     /translation="MQSKRYLVLEDGSFYEGYRLGSDNLTVGEIVFNTAMTGYQETIS
                     DPSYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASAHPSNFRQQKTLHDVL
                     ELHQIPGIAGVDTRSITRKIRQHGVLKAGFTDRKEDIDQLVKHLQQVELPKNEVEIVS
                     TKTPYVSTGKDLSVVLVDFGKKQNIVRELNVRGCNVTVVPYTTTAEEILAMAPDGVML
                     SNGPGNPEVVECAIPMIQGILGKIPFFGICLGHQLFALSQGASSFKMKFGHRGANHPV
                     KNLETGKVDITSQNHGYAIDIDSLKSTDLEVTHLALNDGTVEGLKHKTLPAFSVQYHP
                     EANPGPSDSNYLFDDFVAMMTNFKEKERHINA"
     gene            complement(4358..5632)
                     /locus_tag="PF788_001944"
     CDS             complement(4358..5632)
                     /locus_tag="PF788_001944"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HDG6304203.1"
                     /translation="MKLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIID
                     AKGHFVSPGFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEH
                     FEALQKLIDDNAQVRVLPYASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMM
                     YEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVLL
                     AEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMN
                     PPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLY
                     THFVKNGDWTLQQLVDYLTIKPCETFNLEYGTLKENGYADLTIIDLDSEQEIKGEDFL
                     SKADNTPFIGYKVYGNPILTMVEGEVKFEGDK"
     gene            complement(5650..6531)
                     /locus_tag="PF788_001945"
     CDS             complement(5650..6531)
                     /locus_tag="PF788_001945"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HDG6304204.1"
                     /translation="MNHLLSMEHLSTDQIYKLIQKASQFKSGERQLPNFEGKYVANLF
                     FENSTRTKCSFEMAELKLGLKTISFETSTSSVSKGESLYDTCKTLESIGCDLLVIRHP
                     FNNYYEKLANINIPIANAGDGSGQHPTQSLLDLMTIYEEYGYFEGLNVLICGDIKNSR
                     VARSNYHSLKALGANVMFNSPNAWIDDSLEAPYVNIDDVIETVDIVMLLRIQHERHGL
                     AEETRFAADDYHQKHGLNEVRYNKLQEHAIVMHPAPVNRGVEIQSDLVEASKSRIFKQ
                     MENGVYLRMAVIDELLK"
     gene            complement(6559..7866)
                     /locus_tag="PF788_001946"
     CDS             complement(6559..7866)
                     /locus_tag="PF788_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HDG6304205.1"
                     /translation="MQNDEMFERTVKPVLDVNEKPQPAQWAFLSLQHLFAMFGATVLV
                     PFLTGLPISAALLASGIGTLLYILITKAQIPAYLGSSFAFITPIITGLSTHSLGDMLV
                     ALFMSGVMYVIIGILIKLSGTAWLMKLLPPVVVGPVIMVIGLSLAPTAVNMAMYENPG
                     DMKGYNISFLIVAMITLLVTIVVQGFFKGFLSLIPVLVGIIVGYVVAIFMGIVKFDAI
                     MSAKWIDFPHIYLPFKDYVPSFHLGLVLVMIPIVFVTVSEHIGHQMVLNKIVGRNFFE
                     KPGLDKSIIGDGVSTMFASIIGGPPSTTYGENIGVLAITRIYSIYVIGGAAVIAIVLA
                     FIGKFTALISSIPTPVMGGVSILLFGIIAASGLRMLVESKVDFANNRNLVIASVILVV
                     GIGNLVFNLKEIGINLQIEGMALAALSGIILNLILPKEKKQNN"
     gene            complement(8084..8611)
                     /gene="pyrR"
                     /locus_tag="PF788_001947"
     CDS             complement(8084..8611)
                     /gene="pyrR"
                     /locus_tag="PF788_001947"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDG6304206.1"
                     /translation="MSERIIMDDAAIQRTVTRIAHEILEYNKGTDNLILLGIKTRGEY
                     LANRIQDKIHQIEQQRIPTGTIDITYFRDDIEHMSSLTTKDAIDIDTDITDKVVIIID
                     DVLYTGRTVRASLDAILLNARPIKIGLAALVDRGHRELPIRADFVGKNIPTSKEETVS
                     VYLEEMDQRNAVIIK"
     gene            complement(9010..9927)
                     /locus_tag="PF788_001948"
     CDS             complement(9010..9927)
                     /locus_tag="PF788_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDG6304207.1"
                     /translation="METYEFNITDKEQTGMRVDKLLPELNNDWSRNQIQDWIKAGLVV
                     ANDKVVKSNYKVKLNDHIVVTEKEVVEADILPENLNLDIYYEDDDVAVVYKPKGMVVH
                     PSPGHYTNTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDIAHRGLVE
                     QLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDDGKEAVTHFNVLEH
                     FKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKYGPKKTLDIGGQALHAGLIGFEH
                     PVTSEYIERHAELPQDFEDLLDTIRKRDA"
     gene            complement(9927..10418)
                     /gene="lspA"
                     /locus_tag="PF788_001949"
     CDS             complement(9927..10418)
                     /gene="lspA"
                     /locus_tag="PF788_001949"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDG6304208.1"
                     /translation="MHKKYFIGTSILIAVFVVIFDQVTKYIIATTMKIGDSFEVIPHF
                     LNITSHRNNGAAWGILSGKMTFFFIITIIILIALVYFFIKDAQYNLFMQVAISLLFAG
                     ALGNFIDRILTGEVVDFIDTNIFGYDFPIFNIADSSLTIGVILIIIALLKDTSNKKEK
                     EVK"
BASE COUNT         3284 a         2070 c         1559 g         3756 t
ORIGIN      
        1 ttaagaaatt cattaaaata atgaggctgt aatataaact tctttaagta aatggttaat
       61 tacagcccca ccgatacagt ttgattgatt tacatttgac gcattgtaaa tgtcatactt
      121 tcaattacat tcgttaaggc gttagctgta tctaaagatg tcaaacatgg aataccattt
      181 tcaactgtag tacgtctaat ttggaagcca tccctttcta cttctttacc tttagtcatt
      241 gtatttataa cgatttgaac atcaccattt tgaatacgtg ttaataaatc attttcgcca
      301 ccaattttgc ctactacttc tgcaggtatg tcatactcag ctaatttatt agctgttcca
      361 gacgttgcta aaattttata gccaacttca tttaagcgtt gtgccaattt aacaacttcc
      421 tctttatctt tgtcactgac ggtcattaat actgtaccgt gatctttaac ttcaacgcca
      481 ctacctgtta accctttgaa taacgccttt tctaatgtag tatctttccc catcacttca
      541 cctgttgact tcatttcagg tcctaaagta atatcaacat ttttcaattt attaaaacta
      601 aatactggtg ctttcacaaa gacaccctca gcatatggtt gaaccccttc ttgataaccc
      661 atatctgtta gtttttcccc aatgattgct cgcatagcta attgtgccat tggaatatca
      721 gtaattttac ttaagaatgg taccgttcta ctagaacgtg gatttacttc taaaacatac
      781 acaccatcgt gagctataac gaattgaatg ttgattaagc caatgatgtt taaaccttta
      841 gctaatttta tagtatagtc ctcaagtgtt gctaactcgt cttctgtcaa agtttgtggt
      901 ggatatacag cgattgagtc accactatgc acaccagcac gttcaatatg ttccatgatt
      961 cctggaataa tgaccgtttc tccatcacaa atcgcatcaa cttcaatttc tttaccagtt
     1021 aaatatctat cgactagtac cggatgttcc ggactcgctt ttacagcctg ggtcatatag
     1081 ttttctaact ctttgtcatt gtctacaatt tccattgcgc gaccacctaa tacataagaa
     1141 ggtcttacta caaccggata tccgatttct gcagcattcg ctaatgcttc ctcaggtgat
     1201 gtagctgttt tcccttgtgg ctgtggcacg ttaatttttc ttaatagtgc ttcaaattct
     1261 tttctatctt cagcacgatt tagattttct agtgaagtac caagtatttt aacaccatgt
     1321 ttagccaatt tgtctgctaa attaatcgct gtttgtcctc caaattgtac aacgacacct
     1381 ttaggttttt ctaaattaat gatattcatc acatcttctt cagttaaagg ttcaaagtat
     1441 aatttgtcag aaattgagaa gtctgttgaa actgtttctg gattgttatt cacaattatc
     1501 gcttcgtacc ctgctttttg aattgcccaa acggcgtgaa ctgtcgcata gtcaaattct
     1561 acaccttggc cgattcgaat tggtccagag cctaatacta agattttttc tttgtcagta
     1621 actatggatt cattttcagt ttcgtatgta ccataataat atggtgttga agattcaaat
     1681 tcagctgcgc aagtatcaac catcttgtaa acaggtttaa tatcattttc catacgcaat
     1741 tgatatactt cttcttccgt catattaaag cgatgcgcta ttgttttatc actaaatcca
     1801 taatcttttg catatttaag atattctaaa tcaccttgat gctcttttaa ttgatgctca
     1861 atatcaataa tgttttggaa cttgtgtaag aagaagtaat caatctgagt catattatga
     1921 atttcttcta atgttgtgcc tcttctaatt gcttcgccga tgaaaaataa tcgttcatca
     1981 tcttggtgtg aaatacgttc tttaatataa tcaagatcga agctttcacc atttggtaat
     2041 cctaagtgat gcacaccata ctcaagtgat cgaattgctt ttaacaatga ttcttcgtaa
     2101 gttcgaccaa tggccataac ttcacctgtt gctttcattt gtgtgccaag ctctcgttct
     2161 cctttttcaa atttatcaaa aggaaatctt ggtatttttg aaatcacata gtctaaagtt
     2221 ggttcaaacg ctgcataaga tgttcctgta attggattta acatttcatc taatgttaga
     2281 ccaaccgcga ttttagcagc taattttgca ataggatatc ctgttgcttt tgaagctaac
     2341 gctgatgaac gtgatacacg cggatttact tctataatat aataatcgaa tgaatgggga
     2401 tctaatgcta attgaacatt acaaccacct tcgataccta aagctcgaat aacttttaat
     2461 gaaacatcac gtaacatttg atactcaaca tctgataatg tttgactagg agccacaaca
     2521 attgaatcgc ctgtatgaat accaactgga tcaatatttt ccatgttaca tacaacgatg
     2581 gcattatcgt ttttatcacg cattacttcg tattcgattt ctttaaaacc tgcgatagat
     2641 ttttctaata aacattgcgt tgctggacta taatgaagac catttgagac gatttcatgt
     2701 aattcttcat cattatgaca aataccgcct ccggtaccac ccatcgtaaa tgccggtcta
     2761 acaattagcg ggtatcccac ttgctctttg aatttaaagg cttgctctac tgtatttaca
     2821 atgtcactct ctggtacagg aacgtttaaa tcattcatta atgttctaaa catttcacgg
     2881 tcttctgctt gttgaattga tgttagctca gttcctaata attggacgtt attatcttga
     2941 agcacaccac tttcgtgtag ttgaatcgcc atgtttaaac ctgtttgacc acctaaagtt
     3001 ggaagtaaag cgtcaggttg ctctttacgt ataattcgcg ctataaaatc atgagttaac
     3061 ggttcgatat atactttatc cgcaatttcc ttatcagtca tgattgtcgc tggatttgaa
     3121 tttacaagaa taactcgata tccctcttct tttaaagcta gacatgcttg tgttccagca
     3181 taatcaaatt cagctgcttg acctatgata attggcccag accctattac taaaattgtt
     3241 ttgatatcat tacgtttagg cattgatatg acgctccttt tccttaaaat tagtcatcat
     3301 tgctacaaaa tcatcaaata gatagtttga atctgacggt cctggatttg cttcaggatg
     3361 gtattgaaca gaaaatgctg gtaatgtttt atgttttaaa ccttctacag taccatcatt
     3421 taatgcaaga tgagtaactt ctaaatcagt actttttaac gaatctatat ctattgcata
     3481 tccatggttt tgactcgtaa tatcaacttt tccagtctct aaatttttaa ctggatggtt
     3541 cgcaccacga tgaccaaact tcattttaaa tgagcttgct ccttgagata atgcaaaaag
     3601 ttgatgtcct agacagatac caaagaacgg aattttccct aaaattcctt gaatcattgg
     3661 aatcgcacat tctacaactt caggattacc tggtccgttt gatagcataa cgccatctgg
     3721 agccattgct aaaatttctt cggcagtagt tgtatatggt acaactgtga cgttacaacc
     3781 tctgacgttt aattctcgaa caatattttg cttcttacca aagtctacaa gtacgacact
     3841 tagatcctta cctgtcgaaa catacggtgt tttagtcgaa acgatttcta cttcgttttt
     3901 aggtaattct acttgttgta aatgtttgac aagttgatca atatcttctt ttcgatcagt
     3961 aaaaccagct tttaacacac cgtgttgtcg aattttacgc gtaatacttc ttgtatcaac
     4021 acctgcaatc cctggaattt gatgcaattc taaaacgtca tgaagtgtct tttgctgtct
     4081 aaaattactt ggatgcgcac tcgcttcttt cactacaata ccgtttaatg taggtactaa
     4141 tgattcaaaa tcgtctctat tgataccata attaccgatt aatggatacg taaaagtaat
     4201 gatctgacct gtatatgatg gatctgaaat agtttcttga taacctgtca tcgctgtatt
     4261 aaatacaatt tctcctacag ttaagttatc agatcctaaa cggtagcctt cgtaaaaaga
     4321 accgtcttct aacactagat aacgtttgct ttgcatatta tttatccccc tcaaatttaa
     4381 cttcgccttc aaccattgtt aagatcggat ttccataaac tttatagccg ataaatggtg
     4441 tattatctgc ttttgataag aaatcttctc ctttaatttc ttgttcacta tctaaatcaa
     4501 tgattgttaa atctgcataa ccattttctt ttaatgtgcc gtattctaaa ttaaatgtct
     4561 cacatggttt aattgttaag taatctacta attgttgtaa tgtccaatca ccatttttta
     4621 caaaatgcgt atataataat gggaatgctg tttcactacc aacaattccg aatggtgctt
     4681 tttccattgg ttgtgctttt tcatcacgtg catgtggtgc atggtctgtt gcgatacagt
     4741 caattgtacc gtctagtaac ccttctaaca aagcctctct atcttcagta cttctcaatg
     4801 gtggattcat tttataaatg gcattattac caggaatatc atcttctgtt aacaataaat
     4861 ggtgtggtgt aacttcagct gtaacatgaa tgcctgcgcg tttagcgtca cgaatgactc
     4921 taacactttc tttagtagaa acatgacata catgataatg acaacctgct gcttcagcta
     4981 atagtacatc tcttgcgatt tgaacagatt cacaaatgtt tggaatacct ggtataccta
     5041 actctttact gcgtttccct tcatgcattg caccaccata gattaatgaa ttatcttcac
     5101 agtgtgctac gatggctttg tttacttttg cagcttcaat catgccttca tacatcatgc
     5161 ttgcagtttg tactcctaca ccgtcatctg taaacgcaaa ggcaccttct tttactagtg
     5221 ctgggaaatc aaccaattct ttacctaatt gacgtgttgt aattgaagca taaggtaata
     5281 cacgtacttg agcattgtca tcgattaatt tttgtaaagc ttcaaaatgt tctacagaat
     5341 ctggtaccgg tcttgtgtta ggcattggac atacagttgt aaatccgcct ctagcagcag
     5401 ctttagtacc agtttcaatt gtctctttat attcaccacc aggttcacgt aaatgaacat
     5461 gaacatcgac aaatccaggt gacacaaagt gacctttcgc atctatgatg tcaacaccat
     5521 tgcttggttc aattgcaggt gcaatttgtt taattacctt accatcaatt aaaatatctg
     5581 cttgttgtaa ttcgccattt tgtaatactt taccgttttt aattaatttc atcattttcg
     5641 tccccttacc tattttaata attcatcaat gactgccatt cttaagtaaa cgccattttc
     5701 catttgctta aaaattcttg attttgaagc ttctactaaa tcgctttgta tttctactcc
     5761 tctattcaca ggtgccggat gcataacaat agcatgttct tgtaatttgt tatagcgtac
     5821 ttcatttaag ccatgctttt gatgataatc atctgctgca aatctagttt cttctgcaag
     5881 cccatgcctt tcatgttgaa ttcttaataa cataactata tctactgttt ctataacatc
     5941 atctatattt acataaggtg cttctaaaga atcatcaatc caagcatttg ggctattaaa
     6001 cattacgttt gcacctaatg cttttaaact atggtaatta ctacgtgcga cacgtgaatt
     6061 tttaatgtct ccacaaatca atacattcaa gccttcaaaa tatccatatt cttcatatat
     6121 cgtcattaaa tcaagtaaac tttgtgttgg atgttgtcca ctaccatcac cagcattcgc
     6181 aattgggatg ttaatattcg ctaatttttc atagtagtta ttaaacggat gtctaatgac
     6241 taataaatca cagccaatac tttctaaagt tttacatgtg tcatataaag attcaccttt
     6301 tgaaacagat gatgttgatg tttcaaagct aatcgttttt aaccctagct taagttctgc
     6361 catttcaaaa ctacattttg ttcgagtaga attttcaaag aataaatttg cgacatattt
     6421 cccttcaaag tttggtagtt gacgttcacc agatttaaat tgacttgcct tttggataag
     6481 tttgtatatt tgatctgtag ataaatgttc cattgataat aaatgattca taaaagcgcc
     6541 ctccttaatt tgtaaatctt aattgttttg ttttttctct ttaggtaaga ttaagttcaa
     6601 aataattcct gaaagtgcag ctaatgccat cccctcaatt tgaaggttga taccaatttc
     6661 ttttaagtta aatactaaat taccgatacc tacaactaaa attacagaag ctataactaa
     6721 atttcgattg ttcgcaaaat ctactttgct ttcaactaac attcttaagc cacttgctgc
     6781 aataataccg aaaagtaata tagatactcc tcccataact ggtgtaggta tagaagaaat
     6841 taatgcagtg aacttaccaa tgaatgctaa aacaattgct ataactgctg caccaccaat
     6901 gacgtaaata ctgtatattc tggtaatcgc taatacaccg atattttcac cgtatgttgt
     6961 acttggtggt ccaccaataa tactggcaaa cattgtagaa acaccatcac caatgattga
     7021 tttatcaagt cctggctttt caaagaagtt tctacctacg attttattca ataccatttg
     7081 gtgcccaata tgttcactta ctgttacgaa cacaatcgga atcattacaa gtacaagtcc
     7141 taagtgaaat gaaggtacat aatctttaaa tggcagataa atatgaggga aatctatcca
     7201 ttttgctgac ataattgcat caaatttcac aatccccata aaaatcgcta ccacataacc
     7261 tacgataata cctacaagaa ctggaattaa agataggaat cctttaaaaa atccttgaac
     7321 gactattgtt acaagcaagg ttatcattgc aacaattaag aaactgatat tgtaaccttt
     7381 catatctcca ggattttcat acattgccat attgactgca gtaggcgcta agcttaaacc
     7441 aattaccatg atgactggtc caacaacaac tggtggtaat aatttcatta accatgctgt
     7501 cccacttaat ttgattagaa tcccgatgat gacgtacata acaccactca tgaataatgc
     7561 tacaagcatg tctcctaagc tatgcgtact taatcccgtg ataattggcg tgataaatgc
     7621 aaagctagat cccaagtatg ctggtatttg cgccttcgtt attaagatat aaagtaatgt
     7681 accgattccc gaagctagta acgctgctga tattggtagt cctgttaaga atggtactag
     7741 tactgttgcg ccaaacatcg caaataaatg ttgtaagctt aaaaatgccc attgcgctgg
     7801 ttgtggtttt tcatttacat ctagtacggg ttttactgtt cgttcaaaca tttcatcatt
     7861 ttgcataata ttcatttcct ccgataataa aaaaatctct ttacatcagt atatgtaaag
     7921 agacaaaaag tgtgacaagt tgctacaagt cattttcgtc catagaaatt gacttatagt
     7981 tgtcgaacat gagggtatta ttagataaac aagcatatga aaacttattt atcattcaac
     8041 tcccccacct ttttcagtct ctcgtactga attaaaaggg gtattattta attataactg
     8101 catttctttg atccatttct tctaaataga cacttaccgt ttcctcttta gaagtaggta
     8161 tatttttacc aacaaaatct gctcgaattg gtaactcacg atgtcctcga tcaaccaaag
     8221 cagctaaacc aattttaata ggtctagcat ttagcaaaat agcatcaagt gaagcacgaa
     8281 ccgttcgacc agtatacagc acatcgtcaa taatgatgac tactttatct gtaatatctg
     8341 tgtcgatgtc tattgcgtct tttgtcgtaa gtgatgacat gtgctctata tcatctctaa
     8401 agtatgtaat atcaattgtt ccagtaggta tacgttgttg ctcaatttga tgaattttat
     8461 cttgtatacg attcgctaaa tattcacctc ttgttttgat acctaaaaga attaaattat
     8521 cagtaccttt gttatactcc aaaatttcgt gagcgattct cgtcactgta cgttgtattg
     8581 cggcatcatc cattatgata cgttcagaca tattctcacc ctttcaaaat ttagaaacaa
     8641 aaaacctcat gtctttaata tcgacatgag gtttagtata tacaatcagc ctatttacat
     8701 agaagaatcg tagtattact acttattctt gcatatgtga aagtgttatg atcattttag
     8761 tatatatcta tattttcatg tctttgacgt ctctctggac gctcaattaa agactcttta
     8821 tgttgtactt aaactgttat aaggataata ctaatcaggc gctttgtcaa tctatattga
     8881 aaaattaacc atactcagta aaaatgttaa ccttaatcta ttttataatg tgttttcatt
     8941 taaaaaaacg aaaacgataa acacttatag tttacataat aatgttatcg taattatagc
     9001 acgacacaat tatgcatctc tttttcgaat tgtatctaat aaatcttcaa agtcttgtgg
     9061 taattcagca tgtctttcaa tatattcact tgttactgga tgttcgaatc caataagtcc
     9121 agcatgtaga gcttgaccac caatatccaa tgtctttttc ggtccatact ttggatcacc
     9181 aactaatggg aagccaatat atttcatgtg aacacggatt tgatgcgtac gtcctgtttc
     9241 aagttgacat tcaacaagcg tataatcttt aaaatgttct agtacgttaa aatgtgtcac
     9301 tgcttcctta ccatcatcaa caacagccat agattgacga tcatttttgt ttctaccaat
     9361 tggcgcatcg attgtaccgt aatcatgagg aatattcccg tgaactaaag cgatatattt
     9421 tcttttaaca gatttatcca ttaattgttc tacaagccca cgatgagcaa tatcattttt
     9481 agcaaccatt aataaaccag aagtatccat atctatacgg tgaacaatac ctggacgaat
     9541 ttctccatta atacctgaca aatttttaat ttgatacatt aaaccattaa ctaatgtatt
     9601 ggtataatgc cctggtgatg gatgaactac catgcctttc ggtttatata caactgcaac
     9661 atcgtcatct tcataataaa tatctaaatt taaattttca ggtagaatat cagcttcaac
     9721 cacttctttt tcagtgacaa ctatatgatc attaagtttc actttataat tagatttaac
     9781 aactttatcg tttgcaacga ctaaacctgc tttaatccaa tcttgtatct ggttacgaga
     9841 ccaatcatta tttaattcag gcagcaactt atctacacgc atacctgttt gttctttatc
     9901 tgtaatgtta aattcataag tctccattac ttaacctcct tctccttttt attggaagta
     9961 tcctttaata aggcaataat aattaatatt acaccaattg ttaaacttga atctgcgata
    10021 ttaaatattg gaaaatcata accaaaaata tttgtatcaa taaagtcaac aacttctcct
    10081 gttaaaattc tatcaataaa gtttccaagt gcacctgcaa aaagtaaact aatagcaact
    10141 tgcataaaca aattatattg agcatcttta ataaagaaat atactaaggc tattaatata
    10201 ataatggtaa taataaagaa aaatgtcatt tttccactca atattcccca tgcagcacca
    10261 ttatttcgat gtgatgttat gtttaaaaag tgcggtatca cttcaaatga atctccaatt
    10321 ttcattgtag tagctataat atatttagta acttggtcaa atataacgac aaatactgct
    10381 attaaaatgg aagtgccaat aaaatatttt ttgtgcattt tcgttcctcc aatcaatcgt
    10441 ccatgagaca actctttata ttatagctta cacctgctaa taaaaaaagt aagcatatta
    10501 cattaaatct aatgttacta actcaatact tgataaacta ctatgttttg acattaaata
    10561 tgaacttaat tattcattta tcatatttaa gatgacatta aaaattagga aagcaggctg
    10621 gaacataaat ccctaaaaag acagtagtaa gatattttct aattaaaaa
//
LOCUS       DAMQWL010000085        10284 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.086, whole genome shotgun sequence.
ACCESSION   DAMQWL010000085 DAMQWL010000000
VERSION     DAMQWL010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 10284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10284
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.086"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..128
                     /locus_tag="PF788_001950"
     CDS             <1..128
                     /locus_tag="PF788_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDG6304209.1"
                     /translation="VRHYQLDELLNIIDACAETDYKLKSSYMDKQLILELFILSL"
     gene            complement(173..424)
                     /locus_tag="PF788_001951"
     CDS             complement(173..424)
                     /locus_tag="PF788_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDG6304210.1"
                     /translation="MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNAD
                     NKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK"
     gene            770..2593
                     /gene="lepA"
                     /locus_tag="PF788_001952"
     CDS             770..2593
                     /gene="lepA"
                     /locus_tag="PF788_001952"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDG6304211.1"
                     /translation="MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRD
                     MQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMI
                     GLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISS
                     IRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDD
                     SRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLE
                     FEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCVLRDGSEVT
                     VDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVN
                     IVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFI
                     VHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGG
                     DISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE"
     gene            3156..4280
                     /locus_tag="PF788_001953"
     CDS             3156..4280
                     /locus_tag="PF788_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDG6304212.1"
                     /translation="MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMS
                     TAKYRILKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQL
                     LEKYGVKRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNTGIKSISLDLMYHLPK
                     QTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLL
                     MSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPV
                     NHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFG
                     QTINNLKEKELIVEKNDVIALTNRGKVIGNEVFEAFLIND"
     gene            4380..5357
                     /gene="hrcA"
                     /locus_tag="PF788_001954"
     CDS             4380..5357
                     /gene="hrcA"
                     /locus_tag="PF788_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcription repressor HrcA"
                     /protein_id="HDG6304213.1"
                     /translation="MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRN
                     EMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQY
                     DVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVE
                     HVHLASDIPFNNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMN
                     NHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKI
                     GNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW"
     gene            5389..6015
                     /gene="grpE"
                     /locus_tag="PF788_001955"
     CDS             5389..6015
                     /gene="grpE"
                     /locus_tag="PF788_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDG6304214.1"
                     /translation="MTNKDESVEKNTESTVEETNVKQNIDDSVEQAEESKGHLQDEAI
                     EETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQ
                     AQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEG
                     EAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ"
     gene            6084..7916
                     /gene="dnaK"
                     /locus_tag="PF788_001956"
     CDS             6084..7916
                     /gene="dnaK"
                     /locus_tag="PF788_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDG6304215.1"
                     /translation="MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKN
                     GETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAE
                     SYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDK
                     DEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKEN
                     GVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFE
                     ELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKG
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSK
                     SQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDK
                     NGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNE
                     ADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQ
                     ELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK"
     gene            8052..9191
                     /gene="dnaJ"
                     /locus_tag="PF788_001957"
     CDS             8052..9191
                     /gene="dnaJ"
                     /locus_tag="PF788_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDG6304216.1"
                     /translation="MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADE
                     KFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFS
                     SFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPG
                     TSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKT
                     VKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKL
                     NVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDI
                     KVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE"
     gene            9195..10133
                     /gene="prmA"
                     /locus_tag="PF788_001958"
     CDS             9195..10133
                     /gene="prmA"
                     /locus_tag="PF788_001958"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDG6304217.1"
                     /translation="MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPED
                     KYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNVQFSEQI
                     IAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTT
                     SMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRR
                     NHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIK
                     EKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE"
     gene            10135..>10284
                     /locus_tag="PF788_001959"
     CDS             10135..>10284
                     /locus_tag="PF788_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDG6304218.1"
                     /translation="MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFN
                     DQTVYL"
BASE COUNT         3871 a         1406 c         1969 g         3038 t
ORIGIN      
        1 aagtaagaca ttatcaactt gatgaattat tgaatattat agatgcttgt gcggaaactg
       61 attataaact taaatcatct tatatggata aacagttaat actggaatta ttcattctat
      121 ctttataaaa aataaaagtt caagcatgcg cttgaacttt tatttaaaaa gattatttat
      181 ttgcagtcat taattgtgat ttaatacggt cagctttgtt tgaatgtatt aaattacttt
      241 gagcagcttt gtctactaac ttaactgcta agcttactaa ttcattttta ttatcagcgt
      301 tatttgaaac agctgtttta gcgtttttaa ctgctgtacg cattgcactc ttttgtgaaa
      361 tgttgcgtgc ttcagctttt tcagttgttt ttacacgttt aattgcagat ttgatatttg
      421 ccatttctgt cacctcctaa aagtgagttc atcttatcaa aattttattt gattacaaca
      481 agaaatattt taacaaaagt ctaaccgttg tgcaatcatt tatttgatgg ggttagctta
      541 aaattttgca gatttaataa attgtgttgg aaacacaatc aatacgtttt ataattataa
      601 gtacgtaatt aacatattaa catatcgcaa gtatgtattt aaataaagat tgttataatt
      661 tcaaagttca tccaagatta tggcgtttgc atttacctat taaaaacgtt attatatcaa
      721 agatgcgaaa gataatacgg gtttatttta tgaaagtgag aaggataaaa tggataatga
      781 gcaacgctta aaaagaagag agaatataag gaatttctcg attatagcac atattgacca
      841 cggaaaatct acattggctg atagaatttt agaaaatacc aaatcagttg aaacaagaga
      901 tatgcaagat cagttactag attcaatgga tttagaaaga gaacgtggta ttacaatcaa
      961 attaaacgca gtacgtttaa agtacgaagc taaagatgga aatacttata cattccattt
     1021 aatcgatacg cctggacacg tcgattttac atatgaagtg tcacgttctt tggcagcttg
     1081 tgagggcgcg attttagtag tagatgcggc tcaaggtatc gaagcacaaa cattagcaaa
     1141 tgtttattta gcattagata atgagttaga gttattgcct gttattaaca aaattgattt
     1201 acctgctgca gaacctgaac gcgtgaaaca agaaattgaa gatatgatag gtttagacca
     1261 agacgatgtt gttttagcaa gtgctaaatc taacattgga attgaagaga tactagagaa
     1321 aatagttgaa gttgtgccag ctccagatgg tgacccagaa gcaccactaa aagcgttaat
     1381 atttgattct gagtatgatc catatagagg ggtaatttca tcgataagaa ttgtggacgg
     1441 tgttgttaaa gccggagata aaattcgaat gatggccact ggtaaagagt tcgaagtaac
     1501 agaagttgga attaatacac ctaagcagct tccagttgat gaattaacag ttggtgatgt
     1561 tggttatatt attgcaagta ttaaaaatgt tgatgattct agggttggtg acaccatcac
     1621 attagctagt agacctgcat cagaaccatt gcaaggttat aagaaaatga atccaatggt
     1681 atattgcgga ctgttcccaa tagataacaa aaattataat gatttaagag aagcattaga
     1741 aaaattacaa ttgaatgatg catcattaga atttgagcct gaatcgtcac aagcattagg
     1801 ttttggttat agaactggtt tcttaggtat gttacacatg gaaataattc aagaaagaat
     1861 tgaaagagaa tttggtattg aattaattgc aactgcacca tctgtaattt atcaatgtgt
     1921 tttaagggac ggttcagaag tgacggttga taacccagca caaatgccag atcgtgataa
     1981 aattgataaa atatttgagc catatgttcg tgcaactatg atggttccaa atgactatgt
     2041 cggtgcagta atggaattat gtcaacgtaa acgtggacaa tttataaata tggactattt
     2101 agatgatatt cgtgtaaata ttgtttatga attaccttta gctgaagttg tatttgattt
     2161 cttcgatcaa cttaaatcta atactaaagg atatgcatca tttgattatg aattcatcga
     2221 aaataaagaa agtaatttag tcaagatgga tattttatta aatggtgata aagtggatgc
     2281 gctaagcttc atagttcata gagattttgc atatgaacgt ggtaaagcat tagttgaaaa
     2341 acttaaaacg ttaattccaa gacagcaatt tgaagtacct gtacaggctg caataggaca
     2401 aaaaattgta gcgcgtacaa atattaaatc aatgggtaaa aacgttttag ctaaatgtta
     2461 tggcggtgac ataagccgta aacgtaaatt acttgaaaaa caaaaagcag gtaaagctaa
     2521 gatgaaagca gttggtaatg ttgaaattcc acaagatgct ttcttggctg tattgaaaat
     2581 ggatgatgaa taattttaaa aaatcaatta acaatttaca atgaataaag tttaataact
     2641 aaaaagaggg agcctaggat aaattaacgt cctgggcttt acaatgttat attggcagcc
     2701 atcgacagag ttaaaatgag cttataacaa tggggcccca acacagaagc tgacgaaaag
     2761 tcagcttact ataatgtgca agttggggtg gggccccaac atagagaatt tcgaaaagaa
     2821 attctacagg caatgcaagt tggggtggga cgacgaaata aattttgcga aaatatcatt
     2881 tctgtcccac tcccttatgc atgagtttta ctcatgtaat tttattttta aggacatatt
     2941 acatctggct aatgtgtaag agccactaca taataaatca ttagtggttc tttattattt
     3001 ctatctcact ccctctaaac aagaataaat attaaaatga atcgatatat tagacaatca
     3061 ttgattaaac gttaaagtta aaagtaagaa taattgcaga tagtccaaca ggatatagcc
     3121 gattggataa aaagtctgag aagcggggca ttaaaatgac ggtacaaagt gcatatatac
     3181 atattccatt ttgtgtaaga atatgtacat attgtgattt caataaatat tttatacaga
     3241 atcaacctgt agatgagtac ttagatgcac taatcacaga aatgtctaca gcaaaatata
     3301 ggatcttaaa gaccatgtat gtaggtggcg gcacaccaac ggccctttct attaatcagt
     3361 tggaaagatt acttaaagca atacgtgata cgtttacaat cacaggcgag tatacatttg
     3421 aagcaaatcc tgatgagtta actaaagaga aagtccaact attagagaaa tatggagtaa
     3481 aaaggatttc aatgggcgtt caaacattca agccggagtt attgtctgtt ttaggtagaa
     3541 cgcacaatac tgaagatatt tacacttcgg tgttaaatgc taaaaacaca ggtattaaat
     3601 caatcagttt agatttaatg tatcatttac cgaaacagac gattgaagat tttgaacaaa
     3661 gtttagatct agctttagat atggatattc aacatatttc gagttacggc ttaatacttg
     3721 aacctaaaac ccaattttat aatatgtata gaaaaggctt gctcaaactt cctaatgagg
     3781 atttaggtgc tgacatgtat cagttgctga tgtctaagat agaacaatct cctttccatc
     3841 aatacgaaat atctaatttt gcattagatg gccatgaatc agaacataat aaggtttact
     3901 ggtttaatga ggaatattat ggatttggag caggtgcaag tggttatgta gatggtgtgc
     3961 gttatacgaa tatcaatcca gtgaatcatt atatcaaagc tataaataaa gaaagtaaag
     4021 caattttagt atcaaataaa ccttctttga ctgagagaat ggaagaagaa atgtttcttg
     4081 ggttgcgttt aaatgaaggt gtgagtagta gtaggttcaa aaagaagttt gaccaatcta
     4141 ttgaaagtgt ctttggtcaa acaataaata atttaaaaga gaaggaatta attgtagaaa
     4201 agaacgatgt gattgcactt acaaatagag ggaaagtcat aggtaatgag gtttttgaag
     4261 ctttcctaat aaatgattaa aaaaattgaa atttcgagtc tttaacattg acttactttg
     4321 accaatttga taaattataa ttagcacttg agataagtga gtgctaatga ggtgaaaaca
     4381 tgattacaga taggcaattg agtatattaa acgcaattgt tgaggattat gttgattttg
     4441 gacaacccgt tggttctaaa acactaattg agcgacataa cttgaatgtt agtcctgcta
     4501 caattagaaa tgagatgaaa cagcttgaag atttaaacta tatcgagaag acacatagtt
     4561 cttcagggcg ttcgccatca caattaggtt ttaggtatta tgtcaatcgt ttacttgaac
     4621 aaacatctca tcaaaaaaca aataaattaa gacgattaaa tcaattgtta gttgagaatc
     4681 aatatgatgt atcatcagca ttgacatatt ttgcagatga attatcaaat atatctcaat
     4741 atacaacttt agttgttcat cctaatcata aacaagatat tatcaataat gtacacttga
     4801 ttcgtgctaa tcctaattta gttataatgg ttatcgtatt ttcatcaggt catgttgagc
     4861 atgtacatct tgcttcagac ataccgttta ataatgacaa actaaataca atatcaaatt
     4921 ttgttacaaa caaactaact gagtttaatc agaatttaca agatgatatt gtctcttttg
     4981 ttcaatcaga gcaggaagaa atttttatca ataaattgtt aaatacgatg aataatcata
     5041 tttctaatca aagtaatagc atttatatgg gtggaaaggt taaacttatt gatgcattga
     5101 atgaaagtaa tgtatcttca attcagccca ttctacaata tatagaatca aatagaattg
     5161 cagaattatt acaagatata tcttcaccaa atattaatgt aaaaattggt aatgaaattg
     5221 atgacagctt aagtgatatt tcaattgtaa caagtcaata tcattttgat gaaacgttaa
     5281 aaggtcaaat cgctgtgatt ggacctacag ctatgcatta tcaaaatgtc attcaattat
     5341 taaatagaat ttggtaatga tggattagaa agtattggag gacagaaaat gacaaataaa
     5401 gacgaatcag ttgaaaaaaa cactgaatca acagttgaag aaacaaacgt caaacaaaat
     5461 attgatgatt cagttgaaca agctgaagaa agtaaaggtc atttacaaga tgaagcaata
     5521 gaagaaacgt ctgacgagaa tgttattgaa gaaatagatc caaaagatca aaaaattaat
     5581 gaacttcaac aattagcaga tgaaaacgaa gagaaatatt taaggctcta cgctgagttt
     5641 gaaaattata agcgtagaat tcaaaaagaa aatgaaataa acaaaacata tcaagcacaa
     5701 cgtgtgttaa cagatatttt accagcaata gacaatatag aacgtgcact tcaaattgaa
     5761 ggtgatgatg agacttttaa atctcttcaa aaaggtgtac aaatggtgca tgaaagtttg
     5821 attaacgcac taaaagataa tggtcttgaa gttattaaaa ctgaaggtga agcatttgat
     5881 ccaaatattc accaagctgt agttcaagat gataaccctg attttgaatc tggcgaaatc
     5941 actcaagaac tacaaaaagg atacaagctt aaagatagag tattaagacc atcaatggtc
     6001 aaagtaaacc aataacttaa atttggcgaa aagacattgt ttaaaattaa attaatttaa
     6061 tgattaaatg gaggaatttt attatgagta aaattattgg tatagactta ggtacaacaa
     6121 attcatgtgt aacagtatta gaaggcgatg agccaaaagt aattcaaaac cctgaaggtt
     6181 cacgtacaac accatctgtt gtagctttca aaaatggaga aactcaagtt ggtgaagtag
     6241 caaaacgtca agctattaca aacccaaaca ctgttcaatc tattaaacgt catatgggta
     6301 ctgattataa agtagatatt gaaggtaaat catacacacc acaagaaatc tcagctatga
     6361 ttttacaaaa cttaaaaaat acagctgaaa gctatttagg tgagaaagtt gacaaagctg
     6421 taattacagt acctgcatac tttaacgatg ctgaacgtca agcaactaaa gatgctggta
     6481 aaattgctgg tttagaagtt gagcgtatca ttaatgaacc aacagctgca gcattagcat
     6541 atggtttaga caaaactgat aaagatgaaa aagttcttgt ttttgactta ggtggcggta
     6601 catttgacgt atctatccta gaattaggtg acggtgtatt cgaagtacta tcaacagccg
     6661 gtgacaacaa acttggcggt gatgattttg accaagtaat tattgactac ctagttgcag
     6721 aattcaaaaa agaaaatggc gtagacttat ctcaagataa aatggcatta caacgtttga
     6781 aagatgctgc tgaaaaagct aaaaaagact tatcaggtgt atcacaaact caaatctcat
     6841 taccatttat ctcagctggt gaaaacggtc cattacactt agaagtaaac ttaactcgtt
     6901 ctaaatttga agaattatca gattcattaa ttagaagaac aatggaacct acacgccaag
     6961 caatgaaaga cgctggctta acaaactcag atatcgatga agttatctta gttggtggat
     7021 caactcgtat tccagcagta caagaagctg tcaaaaaaga aatcggtaaa gagcctaaca
     7081 aaggagtaaa cccggacgaa gtagtggcaa tgggagctgc aatccaaggt ggcgttatca
     7141 caggtgacgt taaagacgta gtattattag acgtaacacc actatcttta ggtattgaaa
     7201 ttttaggtgg acgtatgaat acgttaattg aacgtaacac tacgattcct acatctaaat
     7261 ctcaaatcta ttcaacagca gtagataatc aaccatcagt agatgtacac gtattacaag
     7321 gtgaacgtcc aatggctgcg gataataaaa cacttggtag attccaattg actgatattc
     7381 caccagctga acgtggtaaa cctcaaattg aagtaacgtt tgatatcgat aaaaacggta
     7441 ttgtaaatgt aactgcaaaa gacttaggta caaataaaga acaaagaatt acaattcaat
     7501 caagttcttc attatcagac gaagaaatcg accgtatggt aaaagatgct gaagttaacg
     7561 ctgaagcaga taaaaaacgt cgtgaagaag tagacttaag aaacgaagct gacagtctag
     7621 tattccaagt tgaaaaaact ttaactgatt taggcgaaaa tatcggtgaa gaagataaaa
     7681 aatctgctga agagaaaaaa gacgctctta aaactgcttt agaaggtcaa gatatagaag
     7741 atattaaatc taaaaaagaa gaacttgaaa aagtgattca agaattatca gcaaaagtat
     7801 atgagcaagc ggctcaacag caacaacaag cacaaggtgc taatgctggt caaaacaatg
     7861 atagtactgt agaagatgct gaatttaaag aagtaaaaga cgacgacaaa aaataattaa
     7921 acaatacaat tagaatgttg tcatgatctg aaaagtcaaa gtcaatagaa cattggcttt
     7981 ggctttttat ttggatagta tgacatatta cgttaaacta tatgagttaa ttaagaaaag
     8041 gagagatagc tgtggccaaa agagattatt atgaagtttt aggcattagt aaggatgctt
     8101 caaaagatga aatcaaaaaa gcgtatcgaa agctttcgaa aaaatatcat ccagatatta
     8161 acaaagaaga aggtgcagat gaaaagttta aagaaatttc tgaagcctat gaagttttaa
     8221 gtgatgataa taaacgcgca agctatgatc aatttggaca tgatggtcca caaggttttg
     8281 gtggacaagg attcaatggc tctgactttg gcggttttag tggcttcggt ggcggcggtt
     8341 ttgaagatat ctttagctct ttcttcggtg gcggcagaca aagagatcca aatgcaccgc
     8401 aaaaaggtga tgatcttcag tatacaatga cattaacatt tgaagaagcg gtatttggta
     8461 caacaaaaga aatttcaatc cgtaaagatg taacatgcga aacatgtcat ggtgatggtg
     8521 caaagcctgg aacaagtaaa aagacttgta gttactgtaa tggcgctggt catgtagctg
     8581 tagaacaaaa cacaatttta ggtagagttc gtactgaaca agtttgtcct aaatgtaatg
     8641 gaagtggtca agaatttgaa gaagcttgtc caacatgtca cggaaaaggt actgaaaata
     8701 aaacagttaa attagaagtg aaagtacctg aaggtgtcga caatgaacaa caaattagat
     8761 tagctggtga aggctctcca ggcgtgaatg gaggacctgc tggtgattta tacgtagtat
     8821 ttagagttaa accatctgaa acatttaaac gtgatggtga tgatatttat tacaaattaa
     8881 atgttagctt cccacaagca gctttaggcg atgaaataaa aataccaaca ttaaataatg
     8941 aagttatgtt aacaatccct gctggtacac aaacaggtaa gcaattccgc ttaaaagaaa
     9001 agggtataaa aaatgttcat ggctatggat acggagattt atatgttgat attaaagtag
     9061 taacgcctac taaattaaca gatagacaaa aagaactaat gaaagaattt gcccaattaa
     9121 atggtgaaga aattaatgaa caaccttcga attttaaaga tagagcaaaa agattcttta
     9181 agggagaata aagtatgaac tggacagagc tttcaattat tattaatcat gaagcagtag
     9241 aattggctac caatatactt gaaaatcatg gatcaaatgg tgtcgtgata gaagattcag
     9301 atgatttaat taaccaacca gaagataaat acggtgaaat ttacgctttg aaaaaagagg
     9361 attatccaga taagggagta agattgaaag cctattttaa tgaaatgact tatgatgata
     9421 agttgcgaca gcaaattaaa gatgagttat taaatttaga tgaacttgat caacataacg
     9481 ttcaattcag tgagcaaatt attgcagaga cggattggga aaatgaatgg aaaaactatt
     9541 tccatccatt ccgagcgtcg aagaagttca caatagttcc tagttgggaa acatatgcta
     9601 aagaagcgga tgaagagctt tgcattgagc tcgacccagg tatggctttt ggaacaggtg
     9661 atcatccgac tacaagtatg tgtttgaagg caatagaaac atatgtattg ccacagcatt
     9721 cagtaattga tgttggtact ggctcaggta tattaagtat tgcaagtcat ctaatcggtg
     9781 taaaacgtat taaagcgttg gatattgatg aaatggcagt gagtgtagct aaagaaaact
     9841 tcagaagaaa tcattgtgaa acgttaattg aagctgttcc aggtaactta ttgaaagacg
     9901 aaacagaaaa atttgatatt gtaatagcaa atattttagc gcatattatt gatgaaatga
     9961 ttgaagatgc ttataatact ctaaatgaag gcggttattt tattacttct ggtattataa
    10021 aagagaagta tgaaggtata cagtcacata tggagcgtgt aggttttaaa attatttcag
    10081 aacaacatga caacggttgg gtttgtcttg ttggccagaa agtgagtgaa taatgtgcaa
    10141 cgttatttca tagaccaaaa cgctgatgta agtcagcgtt tttttattac aaaaaaagaa
    10201 gatattcatc atataacaaa tgtaatgaga tatgatgttg gtagtaaaat tattttaact
    10261 tttaatgatc aaacagttta ttta
//
LOCUS       DAMQWL010000086        10130 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.087, whole genome shotgun sequence.
ACCESSION   DAMQWL010000086 DAMQWL010000000
VERSION     DAMQWL010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 10130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10130
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.087"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..432
                     /locus_tag="PF788_001960"
     CDS             <1..432
                     /locus_tag="PF788_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HDG6304219.1"
                     /translation="ASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE
                     QFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRS
                     RNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE"
     gene            435..1358
                     /locus_tag="PF788_001961"
     CDS             435..1358
                     /locus_tag="PF788_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDG6304220.1"
                     /translation="MTELLVTPKSLSHMETLIDLGADAFVIGEQKFGLRLPGEFNRQQ
                     MTEAVALAHKNDKKVYAAVNGLFHNYHLDAVEDYINFLHEIRVDRIIFGDPAVVMYVK
                     AQENPIPLHWNAETLVTNHFQCNYWGKRGASRAVLARELNLDEIINIKENSNVEIEVQ
                     VQGMTCMFQSKRMLLGNYYTFQDRQMKIERRNDEQSLLLYDEERQNNYPVYEDYNGTH
                     IMSPNDICLIEELAPFFEAGIDSFKIDGILQTEEYINVVTEQYRQAIDLYNEDPEIYE
                     DEKFMLMDPIEEIQPDHRPFDEGFLYKQTVY"
     gene            1370..2638
                     /locus_tag="PF788_001962"
     CDS             1370..2638
                     /locus_tag="PF788_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006190454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDG6304221.1"
                     /translation="MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLG
                     GQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKT
                     GATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGA
                     MEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLE
                     VDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATV
                     VSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSK
                     KSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNS
                     LDAARHPLQIVQIKVDRPIYPNNMMRKEIG"
     gene            2638..3261
                     /gene="udk"
                     /locus_tag="PF788_001963"
     CDS             2638..3261
                     /gene="udk"
                     /locus_tag="PF788_001963"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDG6304222.1"
                     /translation="MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKD
                     QKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFK
                     PKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQY
                     LSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ"
     gene            3289..3765
                     /gene="greA"
                     /locus_tag="PF788_001964"
     CDS             3289..3765
                     /gene="greA"
                     /locus_tag="PF788_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDG6304223.1"
                     /translation="MENQKQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGD
                     LSENSEYDAAKDEQGFIEQDIQRIEHMLRNALIIEDTGDNNVVKIGKTVTFVELPGDE
                     EESYQIVGSAESDAFNGKISNESPMAKALIGKGLDDEVRVPLPNGGEMNVKIVNIQ"
     gene            4091..4825
                     /gene="pxpB"
                     /locus_tag="PF788_001965"
     CDS             4091..4825
                     /gene="pxpB"
                     /locus_tag="PF788_001965"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001617363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDG6304224.1"
                     /translation="MDVRFINEQTIMIYFENKISEETYRNVTAMVRWIREKEILEIQD
                     IVPSYRAVLIYFDEQAITSSKLIENLELNKFNEKNVHAVNQTNRIIKIPVQYGGTYGP
                     DIEEVAKHNRITVEQVIEKHTSKPYLIYMLGFMPGFPYLGGLDEQLHTPRRNQPRLKI
                     HAGSVGIANNQTGLYPSDSPGGWQIIGRTPLKVFSSEREPMSMYEAGEWIQFYAIDEQ
                     KFIQIERDISDGNFNVDDWVVIENVN"
     gene            4815..5825
                     /locus_tag="PF788_001966"
     CDS             4815..5825
                     /locus_tag="PF788_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000023326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDG6304225.1"
                     /translation="MSIKILQPGLFSTVQDLGRIGYEHIGFSGAGAMDQFSFKVAQSL
                     INNDGPAIEYTLIGPTIQFNTQNTFVITGGSINASLNNKTISMNSVILAEKGDILKIG
                     AITKGARGYLTFGHSINVPSIAESYATHTRSSIGGFKGRKLLADDVITVKINNDFKEN
                     IGKTIHLQDDLLPENNIIHILQGPQFEAFSEEARAKIVNHPYLITEQSDRMGYRLEGD
                     SVAPINQADIISEPVALGSVQVPNDGQPIILLNDKQTIGGYTKIATVCKFDLPKLAQM
                     KPQDTIQFKWISFQEAVDKNREQMSLFNEILKSHQKTPIFDTSSLRHTSKKLATILKG
                     DL"
     gene            5827..6276
                     /locus_tag="PF788_001967"
     CDS             5827..6276
                     /locus_tag="PF788_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit"
                     /protein_id="HDG6304226.1"
                     /translation="MNIEKIEQIIKLVKENDVKKFKYKNFEDEIEIDFTDSNHLAAHS
                     NQSNQSMNNNDLTASKANDNSDVSTNDYHDIKSPMIGTFFLQDSKELTEPIVNVGDKV
                     NKGDIIGYVEAMKVLNEVTTDVAGEITEIVADHGTNVEYDQVLVRIK"
     gene            6290..7651
                     /locus_tag="PF788_001968"
     CDS             6290..7651
                     /locus_tag="PF788_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDG6304227.1"
                     /translation="MLRCLIANRGEIAVRIIRACREYGIETVAVYAKGDEQSLHVHLA
                     DQAICIGEANALDSYLNIDRIISAAQITGANAIHPGYGFLSESTKFAQTVEEQGIAFI
                     GPTKKTMEMMGDKITARQTVHHAGVPVIPGSNGAVNHVSEIENLAKDIGYPVVIKAAS
                     GGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDRVYVEAFIPVAKHVEVQVMGDGQD
                     NYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQICNDAVKVARAANYRSAGTIEFL
                     VTDTAHYFIEMNARIQVEHTVTEMRAERDLVAAQLYLLEHNHLPFSQSDIQFNGHVIE
                     ARINAENPEKKFQPTPGKVTALHLPQGFNVRVDSLLYHGYQVSPYYDSLVAKVIVKSH
                     DRASAIDKLKVTLDEMVIDGFSTTADFLYAVLNYPLYRDGDAKDVDIKFLEKHQIVKG
                     VEL"
     gene            7651..8403
                     /gene="pxpA"
                     /locus_tag="PF788_001969"
     CDS             7651..8403
                     /gene="pxpA"
                     /locus_tag="PF788_001969"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDG6304228.1"
                     /translation="MRVDLNCDLGEAFGNYSFGGDHQIIPLITSANVACGFHAGDENV
                     MNETVKLAKAHNVAVGAHPGLPDLKGFGRRNIDISNDEIYNLMIYQLGALQGFCRIHQ
                     VKINHVKPHGALYQMGAKDREIANVIAQAVYDFDPSLVLVGLANSYLISEAKNVGLIT
                     ASEVFADRRYEDDGQLVSRKESDAVITDTDEALKQVLKMVKENKVISKNNKEVTLQAD
                     TICVHGDGEHALLFVSKIREILMKEGIDIQSL"
     gene            8416..9645
                     /locus_tag="PF788_001970"
     CDS             8416..9645
                     /locus_tag="PF788_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDG6304229.1"
                     /translation="MGRNLKLKKESDFEFTKNHKRLLLGSVFLMATSAIGPAFLTQTA
                     VFTSQFFASFAFAILLSIIIDIGAQINIWRILVVTGLRGQEISNKVVPGLGTVISILI
                     AFGGLAFNIGNIAGAGLGLNAIFGLDVKWGAAITAIFAILIFVSKSGQKIMDVVSMIL
                     GIVMILVVAYVMFVSNPPYGDAFVHTFAPEHPMKLVLPIITLVGGTVGGYITFAGAHR
                     ILDSGIKGKQYLPFVNQSAIAGILTTGIMRTLLFLAVLGVVVTGVTLSSENPPASVFE
                     HAIGPIGKNIFGIVLFAAAMSSVIGSAYTSATFLKTLHKSLNERSNLIVIVFIVISTM
                     IFLFIGKPISLLIIAGAINGWILPITLGAILIASKKKSIVGDYKHPNWMFIFGIVAVL
                     VTILTGIFSFKEVLQLF"
BASE COUNT         3617 a         1394 c         2001 g         3118 t
ORIGIN      
        1 gcttctatat ctgatgacat tcatgtcaca acgatagagc gtaatgaaac gatgattcaa
       61 tatgctaaac aaaatttagc tacttatcat tttgaaaacc aggttcgaat tattgaaggt
      121 aatgctttag agcaatttga aaatgtaaat gacaaagttt atgatatgat atttattgat
      181 gcagcaaaag cgcaatcaaa gaaatttttt gaaatatata caccactttt aaagcaccaa
      241 ggtctcgtaa ttacagataa tgttttatat cacggttttg tatcggatat tgggattgtt
      301 agatcgagaa atgtaagaca aatggttaaa aaggttcaag attataatga gtggttaata
      361 aagcaaccag gatatacaac gaatttttta aatatagacg atggattagc gatttcaatt
      421 aaaggagaat gactatgaca gaattacttg tcacacccaa gtcattaagc catatggaaa
      481 cacttattga tttaggtgca gatgcttttg taattggcga gcaaaagttt ggtttaagac
      541 ttccagggga attcaataga caacaaatga cagaggctgt cgcattagct cacaaaaacg
      601 ataaaaaagt atatgcggca gtgaatggat tatttcataa ttatcattta gatgctgtag
      661 aagattatat taatttttta catgaaatac gagttgacag aattattttc ggggatccag
      721 cagtagtaat gtatgtgaag gcgcaagaaa atccaatacc acttcattgg aatgcagaga
      781 cgttagtaac taatcatttt caatgtaatt actggggtaa aagaggcgca tcaagagctg
      841 tcttagcacg tgagctgaat ttggatgaaa ttattaatat aaaagaaaat tcaaatgtgg
      901 aaattgaggt gcaagttcaa ggaatgactt gtatgtttca atcaaagcgt atgctactag
      961 gcaattatta tacgttccaa gatcgccaaa tgaaaattga acgtcgcaat gatgaacaat
     1021 ctttattact ttatgatgaa gaaagacaaa ataattaccc agtttacgaa gattacaatg
     1081 gtacgcacat tatgtcacca aacgacattt gtttaattga agaattagca ccattttttg
     1141 aggcgggtat agattcattt aaaatcgatg gtattctaca aacggaagaa tatattaatg
     1201 tggtaacgga acagtatcgt caagcgatag atttgtacaa tgaagatcct gaaatctatg
     1261 aagatgagaa atttatgttg atggatccaa ttgaagaaat tcaacctgat catcgaccat
     1321 ttgacgaagg tttcttatat aaacaaacag tatattaagg aggttaatca tgaagacaat
     1381 agaagagatt aaatcaactc ctaaaacagt tatgaagaaa ccagaattat tagcacctgc
     1441 tggaaactta gaaaagttaa aaatagcagt acattatggc gctgatgccg tatttttagg
     1501 tggtcaagaa tatggattac gttcaaatgc tgataatttc acgatggaag aaatagctga
     1561 aggtgttgaa tttgcgaacc gttacggtgc caaaatttat gttacgacaa atattattgc
     1621 acatgatgag aatattgaag gtctagaatc atatttgcgt aatttggaaa agactggtgc
     1681 gacaggtatc attgttgcag atcctttaat tatcgaaaca tgtaaagaag ttgcgccaaa
     1741 acttgaaatt catttatcta ctcaacaatc actttctaat tacaaagctg tagaatattg
     1801 gaaagaagaa ggattggatc gtgttgtatt agcacgtgag accggcgcga tggaaatgcg
     1861 tgaaatgaag gaaaaagtag atattgaaat cgaagcattt attcatggtg ctatgtgtat
     1921 cgcctattca ggtagatgta cattaagtaa tcatatgact gcaagggatt ccaacagagg
     1981 cggttgctgt caaagttgcc gttgggatta tgaattatta gaagttgatg ataatggtga
     2041 acttgatgtt ttttataatc aaggtgaagt tacaccgttt gcgatgagtc ctaaagattt
     2101 aaaattaatc gaatcaattc ctcaaatgat ggatattggt gtggactcat taaaaattga
     2161 aggacgtatg aagtcaattc attatattgc aacagttgtc tcagtatatc gtaaagtcat
     2221 tgatgcgtat gcggcagatc ctgacaactt taagattaat ccggaatggt taatagagtt
     2281 agataaatgt gcaaatagag acactgcacc agcattcttt gagggaacac ctggttatga
     2341 agaacagatg tttggtcaac aacaatctaa aaaatcacca tttgattttt gtggtttggt
     2401 attagactat aatgaagata caaaaattgc gactattcaa caacgaaata actttaaacc
     2461 aggtcaagaa atagaattct ttggtccaga aattgaaaca tttacacaag tagtagaagc
     2521 aatttatgat gaagaaggta acagcttaga cgcggcgcgc catccattac aaatcgttca
     2581 aattaaagtg gatcgcccga tatatccaaa caacatgatg agaaaggaaa ttggctaatg
     2641 aaagctacta caatcattgg catagctggt ggatctggct caggaaaaac aactgtaact
     2701 aacgaaatta tgaaaaactt agaaggtcat agtgtcgctt tacttgctca agattactat
     2761 tataaagatc aaaagcactt gactttcgac gagcgcctag aaaccaatta tgaccatcca
     2821 tttgcattcg ataatgattt attaattgaa aatcttaaag acttgaaaaa tggtaaagca
     2881 gtagaagtac cgacatatga ttatgctagt catacaagaa gtgacattac cattgatttt
     2941 aaacctaaag atgttattat cgtagaaggc attttcgctt tagaaaataa ggtattacgt
     3001 gatatgatgg atgttaaaat atatgttgat acagatgcag acttgagaat attacgccgt
     3061 ttaacacgag atactaaaga gcgtgggcgt tcaatggact ctgttatcaa tcaatattta
     3121 agtgttgtta gacctatgca tgaccaattt attgaaccga ctaagaaata tgctgatata
     3181 attattcctg aaggtgggag caataaagtt gcaatagata ttatgacaac aaaaattcag
     3241 tctttagtta gcaagcaata gtataattca gtaaaggaag atgacaatat ggaaaatcaa
     3301 aagcaatatc caatgactca agaaggtttt gaaaaattag agcgtgaact tgaagaatta
     3361 aaaacagtta agcgtcctga agttgtagag aaaattaaag ttgcacgttc atttggtgac
     3421 ttatcagaga actctgagta tgatgcagca aaagatgaac aaggattcat cgaacaagat
     3481 attcaaagaa ttgagcatat gttaagaaat gcattaatca ttgaagatac tggagataac
     3541 aacgttgtta aaattggtaa aacagtaacg tttgtagaat taccaggtga tgaagaggaa
     3601 agttatcaaa tcgttggttc agctgaatca gatgcattta atggtaagat ttcaaatgaa
     3661 tcaccaatgg ctaaagcgtt aattggtaaa ggtttagatg atgaagttcg tgttccacta
     3721 cctaatggtg gcgaaatgaa cgtaaaaatt gttaatatcc aataaatgat caaatagatt
     3781 atttaattgc gcgattgaag tgtgttaatg atacttcggt cgtgcttttt tatattcaaa
     3841 atcaaaaaat cggacagatg aaaagtaaaa attttccatc agaccgaatg atagcagaac
     3901 ctaaattagt gtaagagtta caatattaac tactccattt taaaaaagca aaatatttcc
     3961 gagaaaacaa attgattatc atttgttatt gtatgcgatt tgaattactt attaaacaac
     4021 ttgtgcttct caatgataca atgaaaaggt attcaatact ggtttattgc aatacaaagg
     4081 gggatttaaa gtggatgtaa gatttattaa cgagcagaca attatgattt attttgaaaa
     4141 taaaatatcc gaagagacat atcgtaatgt cacagcaatg gtacggtgga tacgagaaaa
     4201 agaaatatta gaaattcaag atattgtccc ttcgtatcga gcagttctaa tatattttga
     4261 tgaacaagct ataacatctt ctaaattaat tgaaaattta gaacttaaca aatttaatga
     4321 aaaaaatgtt catgctgtga atcaaaccaa tcgtattatt aaaatacctg ttcaatatgg
     4381 tggtacatat ggaccagata ttgaagaagt agcaaagcat aatcgaataa ctgttgagca
     4441 agttattgaa aaacatacaa gtaaacctta tttaatatat atgctaggat ttatgccagg
     4501 atttccatac ttaggcggac ttgatgaaca actacataca cctagacgta atcagccaag
     4561 gttaaaaatt catgcaggtt ctgtaggtat tgcgaataat caaacaggac tatatccatc
     4621 agattctcct ggcggatggc aaattattgg acgcacaccg ttaaaagtat ttagcagcga
     4681 gcgtgaacca atgtcaatgt acgaagcagg agaatggata caattttatg caatagatga
     4741 acagaaattt atacaaatcg aaagagatat atcagatggc aactttaatg ttgatgactg
     4801 ggtggtgatt gaaaatgtca attaagattt tacaaccagg tctcttttca acggtacaag
     4861 atctaggaag aataggttat gaacatattg gattttcagg cgcaggtgcc atggatcaat
     4921 ttagttttaa ggttgcgcag tcattaatta acaatgatgg tccagcgatt gaatatactt
     4981 tgattggtcc taccattcaa tttaatacgc aaaatacatt tgttataacc ggtggtagta
     5041 ttaatgcttc gctaaataat aaaactatat caatgaattc tgtcatatta gctgagaaag
     5101 gtgacatttt aaaaataggt gctataacca aaggtgcacg cggttatctt acttttggtc
     5161 attctatcaa cgtaccttct attgctgaaa gttatgcaac acatacccga agcagtatag
     5221 gaggattcaa aggtagaaag ttattagctg atgatgtaat aacagtgaaa ataaataatg
     5281 actttaaaga aaacattgga aagacgattc atttacagga cgatttattg ccagaaaata
     5341 atattataca cattcttcaa ggacctcaat tcgaggcatt ttctgaagag gctagagcga
     5401 aaattgtaaa tcatccatat ttaattactg aacaatcaga ccgtatgggc tatcgtttgg
     5461 aaggtgacag cgttgcacca attaatcaag cagatatcat ttctgaaccg gttgctcttg
     5521 gtagtgttca ggtaccaaat gatggtcaac ctattattct gcttaatgat aaacaaacga
     5581 taggtggtta taccaaaatt gcaactgtat gcaaatttga tctgccaaag ttagcacaga
     5641 tgaaaccaca agatacaatt caatttaaat ggatatcatt ccaagaagct gtagataaga
     5701 atcgggaaca aatgtctctg tttaatgaaa ttcttaagag tcatcaaaag actccaattt
     5761 ttgatacatc tagcttgcga catacttcga aaaaattagc aacaatttta aaaggggatt
     5821 tgtaaaatga atattgaaaa aatcgaacaa ataatcaaat tagtgaagga aaatgatgtt
     5881 aagaaattta aatataaaaa ttttgaagat gaaatagaaa ttgacttcac tgactcgaat
     5941 catttggctg cacacagtaa tcaatcaaat caaagtatga acaataatga tttgacagct
     6001 tcaaaagcga atgataactc cgatgtttcg acaaatgatt atcatgacat taaatcacca
     6061 atgataggta cattcttttt acaagatagt aaagaattaa ctgaaccaat tgtgaatgtc
     6121 ggtgacaaag ttaacaaggg agatattata ggatatgttg aagcgatgaa agtattaaac
     6181 gaggtaacaa cagatgttgc tggagaaatt actgaaatag tagctgatca tggcacaaat
     6241 gttgaatacg accaagtttt ggtacgtatt aagtaaaggg ggtaagtaaa tgcttcgttg
     6301 tttaattgcg aacagaggtg aaattgctgt aaggattata agagcttgca gagaatatgg
     6361 gattgaaact gtagcagttt atgcaaaagg ggacgagcaa agcttgcatg tacatttagc
     6421 agatcaagct atatgtattg gggaagctaa tgctttagat agttatttaa atattgaccg
     6481 catcatatct gctgcacaaa tcactggtgc taatgcaatt cacccaggat atggcttttt
     6541 atcagaatca acaaaatttg ctcaaaccgt tgaggaacaa ggcatagcgt ttatagggcc
     6601 tactaaaaaa acgatggaaa tgatggggga taaaataaca gcaagacaaa cagttcatca
     6661 tgcaggtgtt cctgtgattc caggatcaaa tggtgctgtg aatcatgtgt ctgaaattga
     6721 gaatcttgcc aaagacatcg gttatccagt tgttatcaaa gctgccagtg gcggtggtgg
     6781 taaaggtata cgtattgtaa agaaagctga agatttagaa aaggcattta aagaagctaa
     6841 aagtgaagga aaaaaatact ttgatgatga tcgtgtttat gttgaggctt ttatacctgt
     6901 tgcaaaacat gttgaagttc aagttatggg agatgggcag gataattatg tacatttagg
     6961 ggaacgtgat tgttctgtac aacgtaaaaa tcaaaaatta atcgaagaat ctccttgtgc
     7021 agcattaact gaagaaagac gacaacaaat atgtaacgat gctgttaaag ttgcacgtgc
     7081 agcaaattat agaagtgcag gtacgattga atttttagta actgataccg cacattactt
     7141 tattgaaatg aatgctcgaa tacaagttga acatactgtt acagagatgc gagcagaacg
     7201 tgatttggtt gcagcacaac tgtatttatt ggaacataat catttacctt tttcacaaag
     7261 cgatattcaa tttaatggtc atgtgataga agcgagaata aatgccgaaa atcctgaaaa
     7321 gaaatttcaa ccaacaccag gtaaagtgac agcgttacat ttacctcaag gctttaatgt
     7381 gcgagtcgat tctttactat atcacggtta tcaagtttca ccatattatg attctttagt
     7441 agctaaagta attgtaaaat ctcatgatag agcttcagca attgataagt tgaaagtcac
     7501 cttagatgaa atggtgatag atggattttc tacaactgcc gattttttat atgcagtttt
     7561 aaattatcca ctatatcgtg atggagatgc aaaagatgtt gatattaaat ttttagaaaa
     7621 acatcaaatt gttaaagggg tggaattata atgcgagttg atttgaattg tgatttaggc
     7681 gaagcatttg gaaattattc ctttggtggt gatcatcaaa ttattccgtt aattacaagt
     7741 gcgaatgttg cttgtggttt tcacgctggt gatgaaaatg taatgaatga aacggtaaaa
     7801 cttgccaaag cacataatgt tgcagtaggt gcacatcctg gtttacctga tttgaaaggc
     7861 tttggcagac gaaatataga tatctctaac gacgagattt ataatttgat gatttatcaa
     7921 ttaggtgcat tacaagggtt ttgtcgcatt catcaagtta aaattaatca tgttaaaccg
     7981 catggtgcat tgtatcagat gggtgcaaaa gacagagaaa tagcaaacgt tatagcacaa
     8041 gctgtttatg actttgatcc atcactagtg ttagtaggat tagcaaattc atatctaatt
     8101 tcagaagcaa agaatgtcgg attaattaca gcttctgaag tgtttgctga tagacgatac
     8161 gaagatgatg ggcagctcgt tagtagaaaa gaaagtgatg ctgtgattac tgatactgac
     8221 gaagcactta agcaggtttt aaagatggtg aaggaaaata aagttatttc aaaaaacaat
     8281 aaggaagtaa cgttacaagc agatacaatt tgtgtgcatg gtgatggaga acatgcatta
     8341 ttatttgttt cgaaaattag agaaatttta atgaaagaag gcattgatat tcaatcctta
     8401 tagggggcta aaaaaatggg gagaaattta aagcttaaaa aagaaagtga ctttgaattc
     8461 acaaaaaatc ataaaaggtt attattaggt tctgtatttt tgatggcaac ttctgcaatt
     8521 gggccagcat ttttaacgca aacagcagta tttacatcac aattttttgc aagtttcgca
     8581 tttgccatat tactgtctat catcattgac attggtgcac aaattaatat atggcgcata
     8641 ttagttgtaa ctggtttaag aggtcaagaa atatcaaata aagttgttcc tgggcttggt
     8701 actgttatct caatattgat tgcatttggt ggtctagctt ttaatattgg taatattgct
     8761 ggtgccggtt taggtttaaa tgcaattttt ggattagatg taaaatgggg cgcagctatt
     8821 actgcaatct ttgcaatatt aatctttgta agtaaaagtg gccaaaaaat tatggacgtt
     8881 gtttcaatga ttcttggtat tgtgatgatt ttagttgtgg catatgtgat gtttgtttct
     8941 aatccacctt atggtgatgc ttttgtgcat acatttgcgc cagaacatcc aatgaaatta
     9001 gtcttgccca tcattacgtt agttggtgga actgtaggtg gttatattac ctttgcaggt
     9061 gcacatcgta tattagactc tggcattaaa ggtaagcaat atttaccatt tgtaaatcaa
     9121 tcagcaattg ctggtatttt aactacaggt attatgagaa cgttactatt cctagcggta
     9181 ttaggagttg ttgtaacagg tgtgacacta agttctgaaa atccaccagc gtcagttttt
     9241 gaacacgcaa ttggaccaat tggaaagaat atttttggta ttgtgttatt tgctgcagct
     9301 atgtcatcag taattggctc agcatacaca agcgcaacat ttttaaaaac acttcataaa
     9361 tcacttaacg aaagaagtaa tttaattgtg attgtgttta tcgttatttc aacaatgatt
     9421 ttcttattta ttggaaaacc aatcagcctt ttaattatag caggcgcgat aaatggatgg
     9481 attttaccta ttacgttagg tgcaattttg attgcaagta aaaagaaatc aattgttggt
     9541 gattataaac acccaaattg gatgttcatc tttggtatcg ttgcagtact tgttacaata
     9601 ttgacaggta tattctcatt caaagaagta cttcagttat tttaaaagac atttcgacta
     9661 atagcatcac tgtaaatgtt gttagtatta ggcaagatat attttgattt ccggtgattc
     9721 atttataaag cataattaga tatattttaa gggagagtgg tgcatgacaa atgtactgct
     9781 ctttttgttg tgtatcagta ttgtgatgtt ttaatgagaa tattatatga atcattatga
     9841 aatttaataa aaataaaaga aatgattatc attttttctt atatactgtt aaacggtttg
     9901 gaatttttag gtatacactg tattggttga tataactcaa ctaataattg cgaacagagt
     9961 atttcaaatt gaaaagtatt atgagcgtga tacataatca aaattgtagg ctcaagaacc
    10021 actacataat aaaccataag cggttcttta tcatttatgt ctcgctctca aatgtaaatt
    10081 aataattgtt ttgggggagt ttgaagttaa atatttaaca ggatttattt
//
LOCUS       DAMQWL010000087         9670 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.088, whole genome shotgun sequence.
ACCESSION   DAMQWL010000087 DAMQWL010000000
VERSION     DAMQWL010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9670
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.088"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            191..406
                     /locus_tag="PF788_001971"
     CDS             191..406
                     /locus_tag="PF788_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001036301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304230.1"
                     /translation="MNKKSEGLDIIIPRIFRRDHASVESLTENERRLRKEILGSIKKG
                     DYSYLEINKVFYALDRELQYRANNNKL"
     gene            431..694
                     /locus_tag="PF788_001972"
     CDS             431..694
                     /locus_tag="PF788_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDG6304231.1"
                     /translation="MPKIIVPPTPENTYRGEEKFVKKLYATPTQIHQLFGVCRSTVYN
                     WLKYYRKDNLGVENLYIDYSPTGTLINISKLEEYLIRKHKKWY"
     gene            706..867
                     /locus_tag="PF788_001973"
                     /pseudo
     CDS             706..867
                     /locus_tag="PF788_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500084.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1270 domain-containing protein"
     gene            960..1277
                     /locus_tag="PF788_001974"
     CDS             960..1277
                     /locus_tag="PF788_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304232.1"
                     /translation="MAENIKTEQHYYTKDFSGYRNEEDNFVANQELTVTITLNEYRKL
                     IEIKAVKDKEEDTYRGKYFAEERKNEKLEKENIKLKNKIYELQNEEDNEEDEENEEEV
                     NND"
     gene            1270..1572
                     /locus_tag="PF788_001975"
     CDS             1270..1572
                     /locus_tag="PF788_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000163432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2482 family protein"
                     /protein_id="HDG6304233.1"
                     /translation="MTKKYKDMTQEEVKDLLSEKSGELYELAKEIKGESKFDILLFSS
                     IGVIDGDYLAGSSSVIGHTFDLASLLDSTKSYKDIVNVLQMCKSQKFHGIDDNKEG"
     gene            1577..1837
                     /locus_tag="PF788_001976"
     CDS             1577..1837
                     /locus_tag="PF788_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000291481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1108 family protein"
                     /protein_id="HDG6304234.1"
                     /translation="MYYKFGEIKNKIISFNGFEFKVSAMKKHDGISIQIKDMNNIPLK
                     SFHVVDLSELYFATDAMRDVINEWIEENTDEQDRLINLVMKW"
     gene            1851..2213
                     /locus_tag="PF788_001977"
     CDS             1851..2213
                     /locus_tag="PF788_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304235.1"
                     /translation="MAILEDIFEELKLLNNNLRVLNTELSTVDSSIVQEKVKEAPMPK
                     EETAQLESIEEVKETSADLTKDYVLSVGKEFLKKADTSDKKEFRNKLNELGADKLSTI
                     KEEHYEKIVDFMNARINA"
     gene            2210..3376
                     /locus_tag="PF788_001978"
     CDS             2210..3376
                     /locus_tag="PF788_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2800 domain-containing protein"
                     /protein_id="HDG6304236.1"
                     /translation="MKLDHSNRAHAKLSASGAKQWLNCPPSIKASEGIADKSTVFAEE
                     GTFAHELSELYFSLKYEGLTQFEFNKAFQNYKRNQYYSEELREYVEEYVANVEEKYNE
                     ALSRDNDVIALFETKLDLGKYVPESFGTGDVIIFSGGVLEIIDLKYGKGIEVSAIDNP
                     QLRLYGLGAYELLSLMYDIHTIRMTIIQPRIDNFSTEELPISRLLQWGADFVKPLARL
                     AYNGGGEFKAGSHCRFCKINHSCRTRAEYMQNVPQKPPHLLSDEEIAELLYKLPDIKK
                     WADEVEQYALNQAKENDKNYPGWKLVEGRSRRMITDTKAMLEKLVEAGYKPEDITETK
                     LLSITNLEKLIGKKAFSKITEGFIEKPQGKLTLATESDKRPAIKQSAEDDFDKL"
     gene            3402..3959
                     /locus_tag="PF788_001979"
     CDS             3402..3959
                     /locus_tag="PF788_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2815 family protein"
                     /protein_id="HDG6304237.1"
                     /translation="MKAKVLNKTKVITGKVRASYAHIFEPHSMQEGQESKYSISLIIP
                     KSDTSTIKAIEQAIEAAKEEGKVSKFGGKVPANLKLPLRDGDTEREDDVNYQDAYFIN
                     ASSKQAPGIIDQNKIRLTDSGTVVSGDYIRASINLFPFNTNGNKGIAVGLNNIQLVEK
                     GEPLGGASAAEDDFDELDTDDEDFL"
     gene            4027..5979
                     /locus_tag="PF788_001980"
     CDS             4027..5979
                     /locus_tag="PF788_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HDG6304238.1"
                     /translation="MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAI
                     DMTKVDNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV
                     NSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE
                     KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGAN
                     VLDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATG
                     KAKKMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLT
                     KHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFS
                     AIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELA
                     LGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRK
                     THHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLK
                     TYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETI
                     MNKPVDWAKGLNLNSDGFTSPFYMKD"
     gene            5992..6177
                     /locus_tag="PF788_001981"
     CDS             5992..6177
                     /locus_tag="PF788_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3113 family protein"
                     /protein_id="HDG6304239.1"
                     /translation="MQHQAYINASVDIRIPTEVESVNYNQIDKEKENLADYLFNNPGE
                     LLKYNVINIKVLDLEVE"
     gene            6177..6578
                     /locus_tag="PF788_001982"
     CDS             6177..6578
                     /locus_tag="PF788_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PVL family protein"
                     /protein_id="HDG6304240.1"
                     /translation="MARRKVIRVRIKGKLMTLREVSEKYHISPELLRYRYKHKMRGDE
                     LLCGRKDSKSKDEVEYMKSQIKDEEKEREKIRKKAILNLYQRNVRAEYEEERKRRLRP
                     WLYDGTPQKHSRDPYWFDVTYNQMFKKWSEA"
     gene            6578..6835
                     /locus_tag="PF788_001983"
     CDS             6578..6835
                     /locus_tag="PF788_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HDG6304241.1"
                     /translation="MSIISNRKVDMNETQDNVKQPAHYTYGDIEIIDFIEQVTAQYPP
                     QLAFAIGNAIKYLSRAPLKNGHEDLAKAKFYVDRVFDLWEG"
     gene            6838..7038
                     /locus_tag="PF788_001984"
     CDS             6838..7038
                     /locus_tag="PF788_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304242.1"
                     /translation="MATQKQVDYVMSLQEQLELEDCEKYTDEQVKAMSHKEVSNVIEN
                     YKTSIRNEELYYECMSFGLPNC"
     gene            7053..7295
                     /locus_tag="PF788_001985"
     CDS             7053..7295
                     /locus_tag="PF788_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304243.1"
                     /translation="MTDSARKERLNQFFGSKRYLYQDNERVAHTHVVNGTYYFHGHIV
                     PGWQSVKKTFDTAEELEIYIKQHGLEYEEQKQLTLF"
     gene            7310..7558
                     /locus_tag="PF788_001986"
     CDS             7310..7558
                     /locus_tag="PF788_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1024 family protein"
                     /protein_id="HDG6304244.1"
                     /translation="MNNREQIEQSIISASAYNGNDTEGLLKEIEDVYKKAQAFDEILE
                     GLPNAMQDALKEDIGLDEAVGIMTGQVVYKYEEDQEND"
     gene            7551..8087
                     /locus_tag="PF788_001987"
     CDS             7551..8087
                     /locus_tag="PF788_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HDG6304245.1"
                     /translation="MTNTLTIDQLQELLQIQKEFDDRIPTLNLRDSKIAYVVEFFEWF
                     NTLETFKNWKKKPGKPLDVQLDELADMLAFGLSIANQVGVSSEEIKEAIESSFKNSEF
                     HNMFNFKDKEFAQDAVVSTPQIIFKEFYPDQLAIVIAIDIAFNLYSIDQLIDAYKKKM
                     KRNHERQDGTADAGKGYV"
     gene            8124..8330
                     /locus_tag="PF788_001988"
     CDS             8124..8330
                     /locus_tag="PF788_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1381 domain-containing protein"
                     /protein_id="HDG6304246.1"
                     /translation="MTQYLVTTFKDSTGRKHTHITKAKSNQRFTVVEAESKEEAERKY
                     EAQVKRDAVIKVGQLFENIRECGK"
     gene            8327..8530
                     /locus_tag="PF788_001989"
     CDS             8327..8530
                     /locus_tag="PF788_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000141180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304247.1"
                     /translation="MTEVKIKTISDRVYYTTTDLASDDYINLVMNLVIEDFLPVKDVF
                     NNEVWVKRDEIESFTFIKEANDD"
     gene            8523..8759
                     /locus_tag="PF788_001990"
     CDS             8523..8759
                     /locus_tag="PF788_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000608273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304248.1"
                     /translation="MINIPKMKFPKKYTEIIKKYKNKAPEEKAKIEDDFIKEIKDKDS
                     EFYSPTMANMNEYELRAMLRMMPSLIDTGDDNDD"
     gene            8752..9138
                     /locus_tag="PF788_001991"
     CDS             8752..9138
                     /locus_tag="PF788_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000592210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304249.1"
                     /translation="MIKKLKNMDGFDIFIVGILSLFGIFALLLVITLPIYTVASYQHK
                     ELHQGTITDKYNKRQDKEDKFYIVLDNKQVIENSDLLFKKKFDSADIQARLKVGDKVE
                     VKTIGYRIHFLNLYPVLYEVKKVDKQ"
     gene            9135..9287
                     /locus_tag="PF788_001992"
     CDS             9135..9287
                     /locus_tag="PF788_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000595263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDG6304250.1"
                     /translation="MIKQILRLLFLLAMYELGKYVTEQVYIMMTANDDVEAPSDYEKI
                     RAEVSW"
     gene            9355..9555
                     /locus_tag="PF788_001993"
     CDS             9355..9555
                     /locus_tag="PF788_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1514 family protein"
                     /protein_id="HDG6304251.1"
                     /translation="MWIVISIVLAIFLLILLSSISHKMKTIEALEYMNSYLFKQLVKN
                     NGVEGLEDYENEVERIRKRFKS"
BASE COUNT         3754 a         1298 c         1944 g         2674 t
ORIGIN      
        1 aatgatgtgt agagttttgc tttcagcatc ttttatatgt tcttgtactt taataacttc
       61 accattaatt aaatgtaaat ctaaagaagt aacgatttct ttatctaaat attgagtgag
      121 caatctctta tgtatactta tcacctcctt aggttgataa caacattata cacgaaaggt
      181 ggaacaacaa atgaacaaaa aatcagaagg gttagacata atcataccaa ggattttcag
      241 aagagatcat gcgtcagtag aatctttaac agaaaatgaa cgtcgactaa gaaaggaaat
      301 attaggaagt attaaaaaag gtgattacag ctacttagaa ataaacaaag ttttctatgc
      361 attagataga gaacttcaat acagagcgaa taataacaaa ctttaacatt tatcgaaagg
      421 agtgatagag atgccaaaaa tcatagtacc accaacacca gaaaacacat atagaggcga
      481 agaaaaattt gtgaaaaagt tatacgcaac acctacacaa atccatcaat tgtttggagt
      541 atgtagaagt acagtataca actggttgaa atattaccgc aaagataatt taggtgtaga
      601 aaatttatac attgattatt caccaacagg cactctgatt aatatttcta aattggaaga
      661 gtatttgatc agaaagcata aaaaatggta ttaggaggat attaaatgag cgacacatat
      721 aaaagctaat taatagcagt actgtgcttc acagtcttag cgattgtgct tatgccattg
      781 ctgtacttca ctacagcatg gtcaattgcg ggattcgcaa gtatcgcaac attcatatac
      841 tacaaagaat acttttatga agaataaaaa aactgctact tgcgtcaaca agtaacagtg
      901 acaaacattt atcaaaatat acaacttaat taaatcaaaa tatacggagg tagtcaacta
      961 tggctgaaaa tattaaaact gaacaacatt attacactaa agatttctca ggatacagaa
     1021 atgaagaaga taactttgta gcaaatcaag aattgacagt aacaatcaca ttgaacgagt
     1081 acagaaaact tattgaaata aaggctgtta aagataaaga agaagatact tacagaggta
     1141 agtattttgc ggaagaaaga aaaaacgaaa aattggaaaa agaaaatata aaactaaaaa
     1201 acaaaattta tgaattacaa aacgaagaag ataacgagga ggacgaagaa aacgaggagg
     1261 aagtcaacaa tgactaaaaa atataaagac atgactcagg aagaagtaaa agacttatta
     1321 tctgaaaaaa gcggagaatt gtatgaatta gcgaaagaaa ttaagggaga aagtaaattt
     1381 gatattttgc ttttctcatc aataggagtt atcgacggag attatttagc aggttcaagt
     1441 tctgtgattg gtcatacttt cgatcttgct tccttattgg atagcactaa gagttataaa
     1501 gacattgtca atgttctcca aatgtgtaaa tcacaaaaat ttcacggtat tgatgataac
     1561 aaggagggct aaaacaatgt attacaaatt tggtgagata aaaaataaaa ttatcagctt
     1621 taacgggttt gaatttaaag tgtctgcgat gaaaaaacat gacggtatca gtatacaaat
     1681 caaggatatg aataatattc cacttaaatc atttcatgtt gtagatttaa gcgaactata
     1741 ttttgcgacg gatgcaatgc gtgacgttat aaacgaatgg attgaagaga acacagatga
     1801 acaggacaga ctaattaact tagtcatgaa atggtaggag gatttaatca atggcaatat
     1861 tagaagatat ttttgaagaa ttaaaactat taaataacaa tttacgtgtg ttaaacactg
     1921 aactatcaac agtagattca tcaattgtac aagagaaagt taaagaagca ccaatgccaa
     1981 aagaagaaac agctcaactg gaatcaattg aagaagttaa ggaaacttct gctgatttaa
     2041 ctaaagatta tgttttatca gtaggaaaag agttccttaa aaaagcagat acttctgata
     2101 agaaagaatt tagaaataaa cttaacgaac ttggtgcgga taagctatct actatcaaag
     2161 aagagcatta tgaaaaaatt gttgatttta tgaatgcgag aataaatgca tgaagctaga
     2221 tcactcaaat agagctcatg caaagcttag tgcaagtgga gcaaaacaat ggctaaactg
     2281 cccaccgagt attaaggcaa gtgaaggtat tgcagataaa agtacagttt ttgccgaaga
     2341 aggtacattc gcccatgagt taagtgagtt atatttcagc cttaaatatg aaggcctaac
     2401 acagtttgag tttaataagg cttttcaaaa ttataagaga aatcaatatt acagcgaaga
     2461 attgcgtgaa tatgtggaag agtatgtagc taatgtagaa gaaaaatata acgaagcttt
     2521 gagtagggat aatgatgtaa tagctttatt tgaaacaaaa ttagatttag gtaaatacgt
     2581 ccctgaatct tttggaactg gtgatgtcat tatattttca ggtggtgtac ttgaaattat
     2641 tgaccttaaa tatggtaaag gcattgaagt ttcagctata gataatcctc aacttagatt
     2701 atatggcttg ggcgcatatg aactgcttag tttaatgtat gacattcata caattcgcat
     2761 gactatcata caacctcgaa tagataactt ttctactgaa gagttaccaa tatcaagatt
     2821 acttcaatgg ggagccgatt ttgttaaacc attagccaga cttgcttata acggtggagg
     2881 agagtttaaa gcaggtagtc attgtagatt ctgtaagata aatcattcat gtagaacacg
     2941 tgcagaatac atgcaaaatg tgcctcaaaa gccaccacat ttgttaagtg atgaagagat
     3001 tgcagaactt ttatataaac tgcctgatat caaaaaatgg gctgatgaag tagaacaata
     3061 tgcactaaat caagcgaaag aaaatgataa aaactatcct ggttggaagc ttgtagaagg
     3121 tcgttcacga agaatgataa ctgatacaaa agcaatgctt gaaaagttag ttgaagcggg
     3181 ttataaacct gaagatatta cagaaaccaa gttacttagc attacgaatt tagaaaaatt
     3241 aattggtaaa aaagcatttt ctaaaattac agagggtttt atagaaaagc cgcaaggtaa
     3301 attaacactt gctaccgagt cggataaacg accagctata aagcaatctg ctgaagatga
     3361 ttttgacaaa ctataaaaat ttaaaaggac ggtatataaa catgaaagca aaagtattaa
     3421 ataaaactaa agtgattaca ggaaaagtaa gagcatcata tgcacatatt tttgaacctc
     3481 acagtatgca agaagggcaa gaatcaaagt attcaatcag tttaatcatt cctaaatcag
     3541 atacaagtac gataaaagcc attgaacaag ctatagaagc tgctaaagaa gaaggaaaag
     3601 ttagtaagtt tggaggcaaa gttcctgcaa atctgaaact tccattacgt gatggagata
     3661 ctgaaagaga agatgatgtc aattatcaag acgcttattt tattaacgca tcaagcaaac
     3721 aagcacctgg tattattgac caaaacaaaa ttagattaac ggattctgga actgttgtaa
     3781 gtggtgatta tattagagct tcaattaatc tatttccttt caacacaaat ggtaataagg
     3841 gtatcgcagt tggattgaac aacattcaac ttgtagaaaa aggcgaacct cttggcggtg
     3901 caagtgcagc agaagatgat ttcgatgaat tagacactga tgatgaggat ttcttataag
     3961 tcaataggtg gggttttagc cccactttaa ttttaaagaa attgaggtgt caagaatttg
     4021 agatttatga atatagatat tgaaacatat agcagtaatg atatttcgaa atgtggtgcc
     4081 tataaataca cagaagctga agatttcgaa attttaatta tagcttattc aatagatggt
     4141 ggagcgatta gtgcgattga catgactaaa gtagataatg agcctttcca cgctgatttt
     4201 gagacgttta aaattgctct ttttgatcct gctgtaaaaa agtatgcatt caatgctaat
     4261 ttcgaaagaa cttgtcttgc taaacatttt aataaacaga tgccacctga agaatggatt
     4321 tgcacaatgg ttaattcaat gcgtattggc ttacctgctt cgcttgataa agttggagaa
     4381 gttttaagac tacaaaacca aaaagataaa gcaggtaaaa atttaattcg ttatttctct
     4441 ataccttgta aaccaacaaa agttaatgga ggaagaacaa gaaacttgcc tgaacatgat
     4501 cttgaaaaat ggcaacaatt tatagattac tgtattcgag atgtagaagt agaaatgacg
     4561 attgctcata aaattaaaga ctttccagta actgcaattg aacaagcata ttgggttttt
     4621 gaccaacata taaacgacag aggtattaag ctttctaaat cattgatgtt aggagctaat
     4681 gtgctcgata agcagagtaa agaagaattg cttaatcaag ctaaacatat aacaggttta
     4741 gaaaatccta atagtcctac acaattattg gcttggttaa aggatgacca aggattagat
     4801 atacctaatt tacaaaagaa aacggttcag gagtacttaa aagaagcaac aggaaaagct
     4861 aaaaaaatgc tagaaattag attgcaaatg tctaaaacca gtgtgaaaaa atacaacaaa
     4921 atgcatgaca tgatgtgcag tgatgaacgg gtaagaggtc tgtttcaatt ttacggtgcc
     4981 ggtactggaa gatgggcagg tagaggtgta caacttcaga atttaacaaa gcattatatt
     5041 tcagatactg aattagaaat agcaagagat cttattaaag aacaacgttt tgacgattta
     5101 gatttattac tcaatgttca tcctcaagac ttattaagtc aattagttag gacgacattt
     5161 actgctgaag aaggtaatga actagcagta agtgattttt ctgcaataga ggcaagagtc
     5221 atagcatggt atgcaaaaga acaatggcgt ttagatgtgt tcaacacaca cggaaagata
     5281 tatgaagcat cggcttctca aatgtttaat gtcccggtag aaagcataac taaaggcgac
     5341 cctctcagac aaaagggaaa agtgtccgaa ttagctttag gttatcaagg tggcgctgga
     5401 gctttaaaag cgatgggcgc attggaaatg ggcattgaag aaaatgaatt acaaggttta
     5461 gttgatagtt ggcgtaacgc aaatcctaac atagttaatt tttggaaggc ttgccaagag
     5521 gctgcaatta atactgtgaa atcccgaaag acgcatcata cgcatggagt tagattttat
     5581 atgaaaaaag gttttctaat gattgaactg cctagtggaa gagctttagc ttatccaaaa
     5641 gcttcagttg gtgaaaatag ttggggtagt caagttgttg aatttatggg cttagatctt
     5701 aaccgtaaat ggtcaaagtt aaaaacgtat ggtgggaagt tagtcgagaa tattgttcaa
     5761 gcaactgcaa gggatttact tgcgatttct atagctaggc ttgaagcatc aggttttaaa
     5821 atagttggac atgtccatga tgaagtaatt gtagaaatac ctagaggttc aaatggactt
     5881 aaggaaatcg aaactatcat gaataagcct gtcgattggg caaaaggatt gaatttgaat
     5941 agtgacggat ttacttctcc gttttatatg aaggattagg agtgtgattg aatgcaacat
     6001 caagcttata tcaatgcttc tgttgacatt agaattccta cagaagtcga aagtgttaat
     6061 tacaatcaga ttgataaaga aaaagagaat ttggcggact atttatttaa taatccaggt
     6121 gaactattaa aatataacgt tataaatatc aaggttttag atttagaggt ggaatgatgg
     6181 ctagaagaaa agttataaga gtgcgtatca aaggaaaact aatgacattg agagaagttt
     6241 cagaaaaata tcatatatct ccagaacttc ttagatacag atacaaacat aaaatgcgcg
     6301 gcgatgaatt attgtgtgga agaaaagact caaaatctaa agatgaagtt gaatatatga
     6361 agagtcaaat aaaagatgaa gaaaaagaga gagaaaaaat cagaaaaaaa gcgattttga
     6421 acctatacca acgaaatgtg agagcggaat atgaagaaga aagaaagaga agattgagac
     6481 catggcttta tgatggaacg cctcaaaaac attcacgtga tccgtactgg ttcgatgtca
     6541 cttataacca aatgttcaag aaatggagtg aagcataatg agcataatca gtaacagaaa
     6601 agtagatatg aatgaaacac aagacaatgt taaacagcct gcgcattaca catacggcga
     6661 cattgaaatt atagatttca tcgaacaagt tacggcacag tatccaccac aattagcatt
     6721 cgcaataggt aatgcaatca aatacttgtc tagagcaccg ttaaagaatg gtcatgagga
     6781 tttagcaaag gcgaagtttt acgtcgatag agtgtttgac ttgtgggagg ggtaacgatg
     6841 gcaacgcaaa aacaagttga ttacgtaatg tcattacagg agcaactgga attagaagac
     6901 tgcgaaaaat atacagacga acaagttaaa gcaatgagtc ataaagaagt tagcaatgtg
     6961 attgagaact ataagacaag cataaggaat gaagaactat attacgaatg catgtcgttt
     7021 ggactgccta attgttaaaa ggagtgacga ccatgacaga tagcgcacgt aaagaacgct
     7081 taaaccaatt tttcggctct aaaagatatc tgtatcagga taacgaacga gtggcacata
     7141 ctcatgtagt aaatggcacg tattactttc atgggcatat cgtgccaggt tggcaaagcg
     7201 ttaaaaagac atttgatact gctgaagagc tcgaaatata tataaagcaa catggtttgg
     7261 aatacgagga acagaagcaa ctaactttat tttagaggag atggaaatga tgaataaccg
     7321 cgaacaaatt gaacaatcaa ttatcagtgc tagtgcgtat aacggcaatg acacagaggg
     7381 attactaaaa gagattgaag acgtgtataa gaaagcgcaa gcgtttgatg aaatacttga
     7441 aggtttacct aatgctatgc aagatgcact caaagaagat attggtcttg atgaagcagt
     7501 agggattatg acggggcaag tggtctataa atatgaggag gatcaggaaa atgactaata
     7561 cattaacaat tgatcagtta caagagttat tacaaataca aaaggagttc gacgatagaa
     7621 taccaacgct gaacttacga gatagcaaaa tagcatatgt agttgaattc tttgaatggt
     7681 ttaatacatt ggaaacgttt aagaactgga agaagaaacc aggtaagccg ttagatgttc
     7741 agttagatga attagcggac atgttggcgt ttggattgag tattgcgaat caagtaggag
     7801 tgtcatcaga agagataaaa gaagcgattg aatcaagttt taaaaatagt gaatttcaca
     7861 acatgtttaa ttttaaagat aaagaatttg ctcaagacgc agttgttagc acaccacaga
     7921 taatattcaa agaattttat cctgaccaat tggcaattgt aatagcgata gacatagctt
     7981 tcaacttata ttctatcgac cagctcattg acgcatacaa aaagaaaatg aaaaggaatc
     8041 atgaaagaca agatggaaca gcagacgcag gaaaaggata cgtgtaaaga catcttagat
     8101 cgagtcaagg aggttttggg gaagtgacgc aatacttagt cacaacattc aaagattcaa
     8161 caggacgcaa gcatacacac ataactaaag ctaaaagcaa tcaaaggttt acagttgttg
     8221 aggcagagag taaagaagaa gctgagcgca aatacgaggc acaagttaaa agagatgcag
     8281 ttattaaagt gggtcagtta tttgaaaata taagggagtg tgggaaatga cggaggttaa
     8341 aattaaaact atttcagata gagtttatta cacaacaaca gatctagctt ctgacgatta
     8401 tattaatctt gttatgaatc tagtgattga ggattttctt ccggtcaaag atgtgttcaa
     8461 caatgaagta tgggttaaaa gagatgagat tgaatcattt acatttatta aggaggcaaa
     8521 cgatgattaa catacctaaa atgaaattcc cgaaaaagta cactgaaata atcaaaaaat
     8581 ataaaaataa agcacctgaa gaaaaggcta agattgaaga tgattttatt aaagaaatta
     8641 aagataaaga cagtgaattt tacagtccta cgatggctaa tatgaatgaa tatgaattaa
     8701 gggctatgtt aagaatgatg cctagtttaa ttgatactgg agatgacaat gatgattaaa
     8761 aaacttaaaa atatggatgg gttcgacatc tttattgttg gaatactgtc attattcggt
     8821 atattcgcat tgctacttgt tatcacattg cctatctata cagtggctag ttaccaacac
     8881 aaagaattac atcaaggaac tattacagat aaatataaca agagacaaga taaagaagac
     8941 aagttctata ttgtattaga caacaaacaa gtcattgaaa attccgactt attattcaaa
     9001 aagaaatttg atagcgcaga tatacaagct aggttaaaag taggcgataa ggtagaagtt
     9061 aaaacaatcg gttatagaat acacttttta aatttatatc cggtcttata cgaagtaaag
     9121 aaggtagata aacaatgatt aaacaaatac taagactatt attcttacta gcaatgtatg
     9181 agttaggtaa gtatgtaact gagcaagtgt atattatgat gacggctaat gatgatgtag
     9241 aggcgccgag tgattacgaa aaaatcagag ctgaagtttc atggtaatag ctattatcat
     9301 ttttgaatta attatattaa tgtgtttagc aatagcactg gaggtgttgt aaatatgtgg
     9361 attgtcattt caatcgtttt agctatattt ttattgatct tgttaagtag catttctcat
     9421 aagatgaaaa ccatagaagc attggagtat atgaattctt atcttttcaa gcagttagta
     9481 aaaaataatg gtgttgaagg tttagaagat tatgaaaatg aagttgaacg aattagaaaa
     9541 agattcaaaa gctaaagagg gggctaaagc cctctccagg attaaaagaa gcggatattt
     9601 tttatttcgt ttttgtaaat taaaactaat ttatgtgaaa ttgtctttga agtcttgata
     9661 attaagaagg
//
LOCUS       DAMQWL010000088         9644 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.089, whole genome shotgun sequence.
ACCESSION   DAMQWL010000088 DAMQWL010000000
VERSION     DAMQWL010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9644
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.089"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(379..1125)
                     /locus_tag="PF788_001994"
     CDS             complement(379..1125)
                     /locus_tag="PF788_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HDG6304252.1"
                     /translation="MPIEYFTHQFEEITYLSDDLQVKALMMTPHHEVNRIVVYLRGGK
                     GQVGRVRAGRLMQFSDSQTLVIGPYYRGNNGSEGKDEFYRGDLNDVTQLLRLLHDKYP
                     HAFIHMVGFSRGGLQGLLTFQDLPVTSYTIWGGVSDIDLMYEERVDLRGMLRRMIGHP
                     KKDRAAYEARQAIPNINENSPPILIVHGGKDQQVGIHHAYYLADQLELKGATHETFYQ
                     MAEGHVPRPPAMVETLTYIKEFMNQVESHS"
     gene            complement(1130..1603)
                     /gene="ytkD"
                     /locus_tag="PF788_001995"
     CDS             complement(1130..1603)
                     /gene="ytkD"
                     /locus_tag="PF788_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase YtkD"
                     /protein_id="HDG6304253.1"
                     /translation="MKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNL
                     RGIEFPGGKRERGESSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFI
                     EVESLVSKNDYLETAGPVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT"
     gene            1669..1926
                     /gene="yidD"
                     /locus_tag="PF788_001996"
     CDS             1669..1926
                     /gene="yidD"
                     /locus_tag="PF788_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDG6304254.1"
                     /translation="MKKIFLAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAF
                     KGLYLGIRRILKCHPLHKGGFDPVPLKKDKSASKHSHKHNH"
     gene            complement(1923..2924)
                     /gene="menC"
                     /locus_tag="PF788_001997"
     CDS             complement(1923..2924)
                     /gene="menC"
                     /locus_tag="PF788_001997"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDG6304255.1"
                     /translation="MKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAY
                     FGECNAFQTDWYDHETIASVKHVIEQWFEDNRNKSFETYEAALKLVDSLENTPAARAT
                     IVMALYQMFHVLPSFSVAYGATASGLSNKQLESLKATKPTRIKLKWTPQIMHQIRVLR
                     ELDFHFQLVIDANESLDRQDFTQLQLLAREQVLYIEEPFKDISMLDEVADGTIPPIAL
                     DEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYG
                     LSRYFTAMLARKGDYPGDVTPAGYYFEQDVVAHSGILKEGRLEFRPPLVDITQLQPY"
     gene            complement(2929..4407)
                     /gene="menE"
                     /locus_tag="PF788_001998"
     CDS             complement(2929..4407)
                     /gene="menE"
                     /locus_tag="PF788_001998"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDG6304256.1"
                     /translation="MDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY
                     QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMKSIDVQLIFCTLP
                     LELRGFQIVSLDDIEFAGRDITTNSLLDNTMGIQYETSNETVVPKESPSNILNTSFNL
                     DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS
                     VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQK
                     ILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANV
                     DVKIKNPNKEGHGELMIKGANVMNVYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIY
                     DRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK
                     AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYRG"
     gene            complement(4566..5021)
                     /locus_tag="PF788_001999"
     CDS             complement(4566..5021)
                     /locus_tag="PF788_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4909 domain-containing protein"
                     /protein_id="HDG6304257.1"
                     /translation="MKICLMLYLLIFLSSCSTNNKIVGQRFEIQQHNETIGSIYFSAD
                     YAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYL
                     IENLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN"
     gene            5324..5974
                     /locus_tag="PF788_002000"
     CDS             5324..5974
                     /locus_tag="PF788_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HDG6304258.1"
                     /translation="MKITYKYRGDLPLNTENNKNQNQSVKNSERRGMLKGCGGCLISF
                     ILLIILLSACSMMFSNNDNSTNNQSSKTQLTQKDENKNEDKPEEKSETATDEDLQSTE
                     EVPANENTENNQHEIDEITTKDQSDDDINTPNVAEDKSQDDLKDDLKEKQQSSNHHQS
                     TQPKTSPSTETNTQQSFANCKQLRQVYPNGVTADHPAYRPHLDRDKDKRACEPDKY"
     gene            6055..7050
                     /locus_tag="PF788_002001"
     CDS             6055..7050
                     /locus_tag="PF788_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4352 domain-containing protein"
                     /protein_id="HDG6304259.1"
                     /translation="MSNQFKSEEERRQWEQFQAFQNQQNQQNQQYGQKKSKKGWFWGC
                     GGCLVLFILIIIGISACTAGITGNLGGNSSKETNKTHKIGETVKNGDLEVTVNSVETM
                     KSVGPSLAPTNAKGIFVVADVTIKNKGKEALTIDSSMFKLKSGDKTFEADNTGSMSAN
                     QSDNGSIENSFFLQRINPDSTAQGKIVFDVSENIANAKDKKLEVISSLFSVKKITFDL
                     SDAKKTSKAKKDKQDTEVAVASSNSDNVSYEASATTPATTSSADTDSEDSEKSSKDED
                     KQNASKSDKSSVEKSESNEETAPVEPMPHSKPTTSEAPPSQNIHNEDSMYDASTE"
     gene            7126..7752
                     /locus_tag="PF788_002002"
                     /pseudo
     CDS             7126..7752
                     /locus_tag="PF788_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500421.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7793..8137
                     /locus_tag="PF788_002003"
     CDS             7793..8137
                     /locus_tag="PF788_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3969 family protein"
                     /protein_id="HDG6304260.1"
                     /translation="MITFENIQQLEKYTLMTMHGLFNQLKLGIISIENAEHTLFTPYM
                     LETLSSLGVKDSIVDLIHKGTELEDFAAFNLSIEDTVTVCLQRTEELLKQYKNVEFND
                     KILINWRIIQEK"
     gene            8235..8786
                     /locus_tag="PF788_002004"
     CDS             8235..8786
                     /locus_tag="PF788_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304261.1"
                     /translation="MEKNEYIAKYNEYSQLLDATYSQAVAYLLSKYGAVTDDYYKEKS
                     YTRFLNGEIKSISKGKYTRASEGLYCHHISEDKFQNLSDLRFISKFKYSYDVQKKENL
                     VYCDLIEHLILHAIITKESHGQFGVAGLCQMIKPTVIDWYIGEYNPKPAWMQATKARA
                     YLPGILVEKLLIKIDDMLKGIEI"
     gene            complement(9004..9573)
                     /locus_tag="PF788_002005"
     CDS             complement(9004..9573)
                     /locus_tag="PF788_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000864138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HDG6304262.1"
                     /translation="MKVIEKVHYEDILESKIVRLFQAFIKDKMDQLFITSEHFAIDID
                     KLLFQLNLNVRYIKMEGNTSGYLSGRTIYINNNHSINNTRFSIARELGRYLFKNTDLM
                     RDSNDNSLKNLHEMIYESDVNQFSVDLLMPKKQIEALVYNFYEVNNINLSSGLSEKER
                     NKLLNLISTKLEVSKVAAGLRLYNLGIHI"
BASE COUNT         3322 a         1743 c         1488 g         3091 t
ORIGIN      
        1 acattaaata gcatctcctc gtgttgatta ttttggttgg ctgaccaata tttattctag
       61 cacgtagaga tgcatttttt gtgacaatgg tagaaccttt tctgaaccat acgcatagcg
      121 tatgattttc tttttacaat taaagagcca accgttgtta tagtctaaca atggttggct
      181 cctcttattt tatgtgctaa aaatttatag gcaattttat tacaacaatg tacatttaag
      241 gtgaccttca tgccaaaatc gcatcactca tttaatggaa gcagcacgtc ttcatataaa
      301 gtaccgatcc ctaattcaac gcatgtagta ccacatcttc aaagcttgat agttcccatg
      361 cgcacaccac gtttcatact agctatgcga ctcaacttgg ttcataaact ctttaatata
      421 agtcaatgtt tcaaccatcg ctggtggtct tggcacatgt ccttctgcca tttgataaaa
      481 tgtttcatgc gtggcacctt ttaactctag ttggtccgct aaataatacg catgatgaat
      541 accaacttgc tggtctttcc ctccatgtac aattaatatt ggcggactgt tttcattaat
      601 gtttggaatc gcttggcgtg cctcatatgc cgctcgatct tttttcggat gaccaatcat
      661 tcttcgtagc atgcctctta aatcgacacg ttcttcatac attaaatcaa tatctgagac
      721 accaccccag attgtataac ttgttactgg taagtcttga aatgtcaaca atccttgtaa
      781 accacctcgc gaaaaaccaa ccatgtggat aaatgcatgt ggatatttat catgtagcaa
      841 ccttaataat tgcgtcacat catttaaatc gccacggtaa aattcgtctt tgccttcact
      901 cccattgtta cctcggtagt atggcccaat cactaaagtt tgactatctg aaaattgcat
      961 taatctacct gcgcgcacac gtcctacttg acctttgcca cctcgcaaat aaactacaat
     1021 gcgatttact tcatgatgtg gtgtcatcat taaagctttt acttgtaagt catctgacaa
     1081 atatgtaatt tcttcgaatt gatgcgtaaa atattcaatt ggcattcgtt tacgtttgat
     1141 aaaacccaag tgattgcacc ctctctacgc attttaaaat ggtactatct tgcagtaaga
     1201 aactccgttg tgcgagttca atatcattga tacagttaaa caacactggc cctgctgttt
     1261 ctaaataatc gttcttgctt accaatgatt caacttcgat aaaatataca tcttttacaa
     1321 aatcagtttg atcatgtgtt tcaatggtat attgtgctat gtaataaata tttttaactt
     1381 tggcgcctgt ttcttcatat aattcacgtg taactgcttc agcactactt tccccgcgtt
     1441 cccttttacc accaggaaat tcaatccccc gtaaattatg tttggtaaaa agcaattgat
     1501 ttttaaacgt tggaatagct agcacatgat tgccatctgc tatctcatta tcctttttaa
     1561 atgtcaaatt aacttgacga ttatctttat ccctaaactt cacgcgcatc acatccctac
     1621 attgtatgtt aatataatag ttaattacta tcgttggagg cattaattat gaaaaagata
     1681 ttcttggcga tgattcattt ttatcaacgt ttcatttcgc cactcactcc accaacttgt
     1741 cgtttttatc caacatgttc agagtacact agagaagcga ttcaatacca cggtgctttc
     1801 aaaggccttt atttaggtat ccgtcgtatt ttaaaatgtc atccgcttca taaaggcggc
     1861 tttgaccctg ttccgttaaa aaaagacaag tcagcaagca agcattcaca taaacataac
     1921 cattaatatg gttgtaattg agttatatcc actaaagggg ggcgaaattc gagtcgcccc
     1981 tcttttaata tgcctgaatg cgccaccaca tcttgttcaa aataataacc tgctggtgta
     2041 acatctcctg gataatcacc tttacgagca agcatcgctg taaaatagcg gcttaaacca
     2101 tattcgtaca tgccgccaat aaccactttt gcaccatgac ttttcaaagt atcaattgcc
     2161 gtttgcactt tatcaatgcc acctagacga aatggtttta atacaacaac tttcacattg
     2221 tataattcta tcaaattaat tatgtccaac aacgatgttg ccttttcatc aagggctatt
     2281 ggaggtattg ttccatccgc tacttcatca agcatggaga tatctttaaa tggctcttcg
     2341 atataaagaa cctgttcacg cgctaataac tgtaactgtg tgaaatcttg acgatccaag
     2401 gactcatttg catctataac caattgaaag tgaaagtcta attcccgtaa cactctaatt
     2461 tgatgcatga tttgaggcgt ccattttaat ttaattctgg tcggctttgt tgcttttaat
     2521 gactctagtt gtttatttga taagccgctc gctgtcgctc catatgctac tgaaaatgaa
     2581 ggcagtacat gaaacatttg atacaatgcc atgacaatag ttgcccttgc agcaggcgta
     2641 ttttccaatg aatctactaa ttttagtgct gcttcatacg tttcaaatga tttatttcta
     2701 ttatcttcga accattgctc aattacatgt ttcactgagg caattgtttc atgatcatac
     2761 caatctgttt gaaaagcgtt acattccccg aaatatgcat ttcctttgtc atcaatcaat
     2821 tcgataaaca aacaatcacg atgcgttaaa gtgactttcg gtgttacaat ttgtgactta
     2881 aatggctcac tatatttata aaaatgcaaa gctgtcaact tcatcaaatc atcctctata
     2941 caacttattt ctttgtaatt tacctgttga tgtataaggt aaagtatcaa ccttttcaaa
     3001 gtgtttcggt actttatatt tcgctaaatg ttgtgataaa tatgcaatca attgtgcctt
     3061 tgaaatgtca ctttcactga caaaatataa tttaggcact tggccccaag tatcatcagg
     3121 atgccctaca catactgcgt cactgatacc tggaaattgc ttcgctaccg tttcaatttg
     3181 atatggataa atattttcac cgccactaat aattaaatct ttacgtcggt cataaatcat
     3241 gacataacct tcatgatcta tttcagcaat gtcacccgta ttaaaataac cattttcaaa
     3301 cgtacccgtt aaatctgttg gatacaaata tacattcatc acattggcgc ctttaatcat
     3361 taattctcca tgaccttctt tattaggatt tttaattttt acgtcaacat tggcacttgg
     3421 catccctaca gtgtcaggac gtgcatgcaa catttccggt gttgctgtta aaaattgcga
     3481 acatgtctca gtcataccaa atgaattata aattggcagg ttatattgta atgccgtctc
     3541 tatcatagtg gcagataatt tagcaccgcc gagtaatatt ttttgtaaat tataaggttc
     3601 atgtaaacct tgttgcataa gccaatttaa agtttgtggc acaagcgaaa tgtgcgtgat
     3661 tcgttcattt ttaatcatcg ttaaaatttg ttcggcattg aatttatcaa caatgcgcac
     3721 agtaaaacct tcaataacag ctcttaaaag tacactgaga cccgaaatat gataaatcgg
     3781 caagacagat agccaattag tgtcacgatc aaatcccaag ctctctttac atccgattgc
     3841 actggcataa tgattacgaa acgtttgtgg caccgctttt tgagggcccg ttgtccctga
     3901 tgtaaacata atcgatgcaa tgtcatctaa attaaatgat gtatttaata tgttggacgg
     3961 cgactctttc ggcaccacag tttcattcga tgtttcatat tggataccca ttgtgttgtc
     4021 caacaaactg ttcgttgtaa tatcccttcc agcgaattca atatcatcca gcgatacaat
     4081 ttgaaaccct cgtaattcca gtggcaaggt acaaaaaatc aattgtacat cgattgactt
     4141 catctgattc gtcatctcat taggtgtcaa ccttgtatta atcatcgcaa tttcaatatt
     4201 tgccaaccaa catgcatgta ttaaaatgat cgattgaatc gaattatcta tgtatagccc
     4261 aacacgagat tgttgataag ccttgagtct tttagccaat agactcgctt cacagtataa
     4321 attttgataa gtataagatt cttgaccgtc tgttatcgca atatgatgtc cattttgttg
     4381 tgcttgttta tataaccaaa agtccatgcg ttattcctcc aaaatcattt acattataat
     4441 tataacgatt ttatgacatt ctagcagtgg ttatgtttaa aaatataaaa aagtagacga
     4501 attgatgcat tgatatgatt gttataatgc tcaatacata tcgttatatc attcgtctac
     4561 tattatcagt tatttttatt taattttagt gtcattctgt cattttgatg tggtgattta
     4621 cccattgttg ccacatcatc tgcaatgtca attggtatac ggttcatgtc ttgtaatgca
     4681 cttaaatgga atacttcatc atctaaattt tcaatgagat atacataata tgttaccttg
     4741 tcctttttat attttaacgt tttccaaaag tccggcttgc aattcaatac attatccgga
     4801 atatattcaa taaataagta acgtttgctg cctactttgt ctatgaaata ttttgcagtg
     4861 cctttttcta tacctcttat atgtgcatag tctgctgaaa agtaaatact acctattgtt
     4921 tcattatgtt gttgtatttc aaatcgttgg cctactattt tattatttgt gctacaacta
     4981 cttaaaaaaa tcagtagata tagcattaaa catattttca tccccttgaa ttttaaaaac
     5041 tttttcaaaa gcaacacctc taaaaataaa tacaatatat tatagcaaat agaaattatt
     5101 attttgttaa attatgttgt catgttcgtg tcattttgag tcgtaataca actttacaat
     5161 tattaaatta acacttctac aatccaaaaa tatttttaaa gttttgaaaa aaattaaagt
     5221 atttccacta ctaatttggt aaaatatgat tatgtgatat agtgaaagcg ttttacactt
     5281 aataactccc tcttaaatgc atccaggttt tatgtagtaa atcatgaaaa taacatataa
     5341 atatagagga gatttacctt tgaatacaga gaacaacaag aatcaaaacc aatctgttaa
     5401 aaattctgaa agacgcggca tgttaaaagg atgcggcggt tgccttattt cttttatttt
     5461 attaataatc ttattatcag cctgttcaat gatgtttagt aataatgaca attccactaa
     5521 taatcaatca tcaaaaacgc aattaactca aaaagatgaa aataaaaatg aagataagcc
     5581 tgaggaaaaa tcagaaacag caacagatga ggatttacaa tcaaccgaag aagtacctgc
     5641 aaatgaaaat actgaaaata atcaacatga aattgatgaa ataacaacaa aagatcaatc
     5701 agacgatgat attaacacac caaacgttgc agaagataaa tcacaagacg acttgaaaga
     5761 tgatttaaaa gaaaagcaac aatcaagtaa ccatcatcaa tccacgcaac ctaagacctc
     5821 accatcaact gaaacaaaca cgcaacaatc atttgctaat tgtaagcaac ttagacaagt
     5881 atatccgaat ggtgtcactg ccgatcatcc agcatatcga ccacatttag atagagataa
     5941 agataaacgt gcatgtgaac ctgataaata ttaaacaaca agcgaattga attcaaattg
     6001 tatttagctt tatgcactaa tcacatagta aataatgagg gagatttttt aggcatgagc
     6061 aatcaattca aaagcgaaga agagcgaaga caatgggaac aattccaagc tttccaaaat
     6121 caacaaaacc aacagaacca gcaatacgga caaaagaaat ctaaaaaagg atggttctgg
     6181 ggctgtggtg gttgtctagt attatttatt ttaattatca tcggtatttc agcttgtaca
     6241 gctggtatta caggtaacct tggcggaaat agttctaaag aaacgaacaa aacccataaa
     6301 atcggtgaaa ctgttaaaaa tggcgacctt gaagtcactg taaattcagt ggaaactatg
     6361 aaatctgtag gaccatctct tgcaccaaca aacgctaaag gtatatttgt cgttgctgat
     6421 gtgacgatta aaaacaaagg taaagaagcg ttaacaattg atagttcaat gtttaagcta
     6481 aaatccggtg ataaaacatt tgaagcagat aatacaggtt caatgtctgc taatcaaagt
     6541 gacaatggta gtatagaaaa ttcatttttc ttacagcgta taaatccaga tagcactgct
     6601 caaggtaaaa ttgttttcga tgtgtcagaa aacatagcca acgcaaaaga taaaaaatta
     6661 gaagttattt ctagtttatt tagcgtcaag aagattacat ttgatttatc cgatgctaaa
     6721 aaaacatcaa aagctaaaaa agacaagcaa gatacagaag tagctgttgc gagttcaaat
     6781 agcgataatg taagttatga agcttcggct actacacctg ctacaacttc tagtgcggat
     6841 actgattctg aagatagcga aaagtctagt aaagatgagg ataagcagaa tgcgtctaaa
     6901 agtgataaat ctagtgtaga aaaaagtgaa tctaatgagg aaactgctcc tgtagagccc
     6961 atgccccata gcaaacctac cactagtgaa gcaccaccta gccaaaatat tcacaatgaa
     7021 gatagcatgt acgacgcttc aacagaataa aatttcaggg tagctcggct acccttcttt
     7081 tacggaaaaa ttaattatac ataatcaaat caaggagata aaaaaatgaa attcaaagct
     7141 atcgttgcaa tcacattatc attgtcacta ttaactgcct gtggtgctaa tcaacataaa
     7201 gaaaatagta gtaaatcaaa tgacactaat aaaaagacgc aacaaactga caacactaca
     7261 cagtcaaata cagaaaagta aatgacacca caagaagccg aagatatagt tcgaaacgat
     7321 tacaaagcaa gaggcgttaa tgaatatcaa acattaaatt ataaaacaaa tcttgaacga
     7381 agcaatgaac atgaatatta tgttgaacat ctagtccgcg atgcagttgg cacaccatta
     7441 aaacgttgtg ctattgttaa tcgacacaat ggcacaatta ttaatatttt tgatgatatg
     7501 tcagaaaaag acaaagaaga atttgaagca tttaaaaaga gaagccctaa atacaatcca
     7561 ggtatgaaca atcatgatga aacagatggt gagtcagaag acattcaaca tcatgacatt
     7621 gataataaca aagcaattca aaatgacata ccagatcaaa aagtcgacga taaaaatgat
     7681 aaaaatgctg ttaataaaga agaaaaacat gataatgggg caaataattc tgaagaaact
     7741 aaagttaaat aatggcatac tttgattaat cgtaattttt aggagaaacg ctatgataac
     7801 atttgagaat atacaacaac ttgagaaata caccttaatg actatgcatg gtctttttaa
     7861 tcaacttaaa ctcggcatta tttcaatcga aaacgcagag catacgcttt ttacacctta
     7921 tatgttggaa acgctctctt ccctaggcgt gaaagacagc attgtcgatt taattcataa
     7981 agggactgaa ttagaagact ttgcggcatt taatttatca attgaagaca cagttacagt
     8041 ctgtttacaa agaactgaag aactattaaa acaatacaaa aatgtggaat tcaatgacaa
     8101 aatattaatc aattggcgta ttatacaaga gaaatagaca tataaaagtc gaatgtaact
     8161 acgtgagtat tgattttatt ctttgtaaat tacaagcatt tcatattata aagtttgaaa
     8221 agaggtatat tgaaatggag aaaaatgaat atatagctaa atataatgaa tatagtcaat
     8281 tattagacgc tacatactcg caagctgtag catacctttt aagtaaatat ggcgctgtaa
     8341 ccgatgatta ttataaagaa aaatcataca cgcgattttt aaatggagaa atcaaaagta
     8401 tttcaaaagg aaaatacact agagctagcg aaggattata ttgccatcat ataagcgagg
     8461 acaaattcca aaatctatct gatctaagat tcatttccaa atttaagtac tcatacgacg
     8521 ttcaaaagaa agaaaactta gtgtactgtg atctaatcga gcatttaatt ttacatgcaa
     8581 ttattacaaa agaatcccat ggccaatttg gtgtagctgg attatgtcaa atgatcaaac
     8641 caacagtcat tgattggtac attggcgaat ataatccaaa accagcatgg atgcaagcca
     8701 ccaaagcacg tgcctatttg cctggaatat tagtagagaa attactcatt aaaattgacg
     8761 atatgttaaa aggaatagaa atataagatt tccttgagtc tagataaatg attaatgtag
     8821 atttattttt tgctgttgag attttgttat agatgtttaa acctgtaatt aaatatattt
     8881 tataaaatag accacgcata cctatctata aacggacaat gtttataaat gagtttgcat
     8941 ggtcttgaat tgtattaaat ttcttttggt tttaataaat cgactagatt ttcacaatat
     9001 ttatcaaata tgtattccta aattatacag ccttaatcca gcagctactt tcgaaacttc
     9061 caacttagtt gatataaggt tcaatagttt gtttcgttct ttttcagata aaccagaact
     9121 taaattgata ttattgactt cataaaaatt atagactaat gcctctattt gctttttagg
     9181 cataagtaag tcgactgaaa actgatttac gtcgctttca taaatcattt catgtaaatt
     9241 ctttagacta ttatcgttac tatctctcat taagtctgta tttttaaata aataacggcc
     9301 caattcacga gctattgaaa atcttgtatt attaatcgag tgattattat taatatagat
     9361 tgttcttcca cttaaataac ccgaagtatt accctccatt ttaatatatc taacatttaa
     9421 attaagttga aataatagct tgtctatgtc aatagcaaag tgttcagaag taataaaaag
     9481 ttgatccatt ttgtccttta taaatgcctg aaataatcga actatttttg attctaaaat
     9541 atcttcataa tgaactttct caataacttt caattgattc cccaccctaa ctaaaaaaat
     9601 cgaacctaca tcatttaata aatttataac tataggtgta aaca
//
LOCUS       DAMQWL010000089         9528 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.090, whole genome shotgun sequence.
ACCESSION   DAMQWL010000089 DAMQWL010000000
VERSION     DAMQWL010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9528
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.090"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            200..1096
                     /gene="xerC"
                     /locus_tag="PF788_002006"
     CDS             200..1096
                     /gene="xerC"
                     /locus_tag="PF788_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDG6304263.1"
                     /translation="MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLEL
                     NTFEYRDARNYLSYLYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKK
                     EKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFY
                     ANGVTVLGKGSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGV
                     RYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHV
                     SNQQLRKVYLNAHPRAKKENET"
     gene            1093..1638
                     /gene="hslV"
                     /locus_tag="PF788_002007"
     CDS             1093..1638
                     /gene="hslV"
                     /locus_tag="PF788_002007"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDG6304264.1"
                     /translation="MSNTTLHATTIYAVRHNGKAAMAGDGQVTLGQQVIMKQTARKVR
                     RLYEGKVLAGFAGSVADAFTLFEKFETKLQQFSGNLERAAVELAQEWRGDKQLRQLEA
                     MLIVMDKDAILVVSGTGEVIAPDDDLIAIGSGGNYALSAGRALKRHASHLSAEEMAYE
                     SLKVAADICVFTNDNIVVETL"
     gene            1704..3107
                     /gene="hslU"
                     /locus_tag="PF788_002008"
     CDS             1704..3107
                     /gene="hslU"
                     /locus_tag="PF788_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HDG6304265.1"
                     /translation="MDTAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLL
                     DEESKQEISPKNILMIGPTGVGKTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVES
                     MVRDLVDVSVRLVKAQKKSLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGG
                     AIPNFGQNNEDEEEPPTEEIKTKRSEIKRQLEEGKLEKEKVRIKVEQDPGALGMLGTN
                     QNQQMQEMMNQLMPKKKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGI
                     IFIDEIDKVATNNHNSGQDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAF
                     HVSKPSDLIPELQGRFPIRVELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNF
                     TDEAITRLAEIAYQVNQDTDNIGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVD
                     DKLKSISTNKDLSAFIL"
     gene            3132..3905
                     /gene="codY"
                     /locus_tag="PF788_002009"
     CDS             3132..3905
                     /gene="codY"
                     /locus_tag="PF788_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HDG6304266.1"
                     /translation="MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSR
                     RGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLMEVKQTESNIDIDNVLTVFPPEN
                     RELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
                     EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIV
                     NALRKLESAGVIESRSLGMKGTFIKVKKEKFLDELEKSK"
     gene            3956..4048
                     /locus_tag="PF788_002010"
     CDS             3956..4048
                     /locus_tag="PF788_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304267.1"
                     /translation="MAVVNEMTLMIMLKSFLYFCLIFNQIDISH"
     gene            4247..5014
                     /gene="rpsB"
                     /locus_tag="PF788_002011"
     CDS             4247..5014
                     /gene="rpsB"
                     /locus_tag="PF788_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDG6304268.1"
                     /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQ
                     KTVKKVDEAYNFLKQVSEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLLT
                     NYKTISKRIKRISEIEKMEEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQA
                     LFVVDPRKERNAIAEARKLNIPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMA
                     DAILEGQQGVSNEEVAAEQNIDLDEKEKSEETEATEE"
     gene            5048..5161
                     /locus_tag="PF788_002012"
     CDS             5048..5161
                     /locus_tag="PF788_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304269.1"
                     /translation="MGDKILMLITFFKKKIEANYKYSIRVLAILPIIMLKS"
     gene            5196..6077
                     /locus_tag="PF788_002013"
     CDS             5196..6077
                     /locus_tag="PF788_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDG6304270.1"
                     /translation="MATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREK
                     GIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQELVKEIANQVLD
                     TKAETVEALMETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMG
                     GRIGVLTVVEGSTDEEAARDVAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEG
                     KPENIVEKMVEGRLRKYLQEICAVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEG
                     MEKREENFADEVKGQMK"
     gene            6214..6936
                     /locus_tag="PF788_002014"
     CDS             6214..6936
                     /locus_tag="PF788_002014"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000057332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDG6304271.1"
                     /translation="MAQISKYKRVVLKLSGEALAGEKGFGINPVIIKSVAEQVAEVAK
                     MDCEIAVIVGGGNIWRGKTGSDLGMDRGTADYMGMLATVMNALALQDSLEQLDCDTRV
                     LTSIEMKQVAEPYIRRRAIRHLEKKRVVIFAAGIGNPYFSTDTTAALRAAEVEADVIL
                     MGKNNVDGVYSADPKVNKDAVKYEHLTHIQMLQEGLQVMDSTASSFCMDNNIPLTVFS
                     IMEEGNIKRAVMGEKIGTLITK"
     gene            6955..7509
                     /gene="frr"
                     /locus_tag="PF788_002015"
     CDS             6955..7509
                     /gene="frr"
                     /locus_tag="PF788_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDG6304272.1"
                     /translation="MSDIINETKSRMQKSIESLSRELANISAGRANSNLLNGVTVDYY
                     GAPTPVQQLASINVPEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVP
                     ALTEERRKERVKDVKKIGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQ
                     KATDNSIKEIDQMIADKEKDIMSV"
     gene            7882..8652
                     /locus_tag="PF788_002016"
     CDS             7882..8652
                     /locus_tag="PF788_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HDG6304273.1"
                     /translation="MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKM
                     PRIKGHYEGMQTIKKITRVASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKT
                     FLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVH
                     SIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSY
                     SEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE"
     gene            8659..9441
                     /locus_tag="PF788_002017"
     CDS             8659..9441
                     /locus_tag="PF788_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDG6304274.1"
                     /translation="MKVRTLTAIIALIVFLPILLKGGLVLMIFANILALIALKELLNM
                     NMIKFVSVPGLISAVGLIIIMLPQHAGPWVQVIQLKSLIAMSFIVLSYTVLSKNRFSF
                     MDAAFCLMSVAYVGIGFMFFYETRSEGLHYILYAFLIVWLTDTGAYLFGKMMGKHKLW
                     PVISPNKTIEGFIGGLFCSLIVPLAMLYFVDFNMNVWILLGVTLILSLFGQLGDLVES
                     GFKRHFGVKDSGRILPGHGGILDRFDSFMFVLPLLNILLIQS"
BASE COUNT         3547 a         1304 c         1866 g         2811 t
ORIGIN      
        1 taaaaggcaa tgaaataata aatggcaagg ctattaataa agacttttag taattaattt
       61 aaaaaagagg tattctaatt aacaggtttt ccgattagtt acaattattt aattctcaaa
      121 agatttagaa ttgattatca aattactgta agccctttgc tgtatatgct acaattctta
      181 ttgatggagg gtaaatgtat tgaatcatat tcaagatgcg tttttaaata cattgaaagt
      241 tgaacggaat ttttcggaac acacattgaa atcatatcaa gatgacttaa ttcagtttaa
      301 tcaattttta gaacaagaac atttagagtt gaatactttt gaatacagag atgctagaaa
      361 ttatttgagc tatttatatt caaatcattt gaaaagaaca tctgtttctc gtaaaatctc
      421 aacgttaaga actttctatg aatattggat gacgcttgat gagaacatta ttaatccatt
      481 tgttcaatta gtacatccga aaaaagaaaa atatcttccg caattctttt acgaagaaga
      541 aatggaagcg ttattcaaaa ctgtagaaga ggacacttca aaaaatttac gggatcgagt
      601 tattcttgaa ttgttgtatg ctacaggcat ccgtgtttcg gaattagtaa atattaaaaa
      661 acaagatata gatttttacg cgaatggtgt taccgtatta ggaaaaggga gcaaagagcg
      721 ctttgtaccg tttggtgctt attgtagaca aagcatcgaa aattatttag aacatttcaa
      781 accaattcag tcatgcaatc atgattttct tattgtaaat atgaagggtg aagcaatcac
      841 tgaacgcggt gtacgatatg ttttaaatga tattgttaaa cgaacagcag gcgtaagtga
      901 gattcatccc cacaagctca gacatacatt tgcaacgcat ttattgaatc aaggtgcaga
      961 cctaagaaca gtacaatcgt tattaggtca tgttaatttg tcaacaactg gtaaatatac
     1021 acacgtatct aaccaacaat taagaaaagt gtatctaaat gcacatcctc gagcgaaaaa
     1081 ggagaatgaa acatgagtaa tacaacatta catgcaacaa caatttatgc tgtaagacat
     1141 aatgggaaag cagctatggc tggagatggg caagtaacgc ttggtcaaca agtcatcatg
     1201 aaacaaacgg caagaaaagt gcgacgttta tatgaaggta aagtgttagc tggtttcgca
     1261 ggtagtgtag cagatgcgtt tacgttattt gaaaaattcg aaacaaaatt acaacagttt
     1321 agtggtaact tagaaagagc tgctgttgaa ttggcacaag aatggcgagg cgataaacaa
     1381 ttacgtcaat tagaagctat gctaattgta atggataaag atgctatttt agttgtcagt
     1441 ggaactggcg aagttattgc tccagatgat gaccttatcg ctattggatc aggaggcaac
     1501 tacgcattaa gcgcaggacg tgcattgaaa cgccatgcat cgcatttgtc tgctgaagaa
     1561 atggcatatg agagcttgaa agtagcggct gatatttgtg tctttaccaa cgataatatt
     1621 gttgtcgaaa cactataata atcagagcac gataaataat tacgagcaat taattttagt
     1681 taaaagacgg aggaatgaaa ttaatggata cagctggaat aagattaact ccaaaagaaa
     1741 tcgtatctaa attaaatgaa tacatcgttg gacaaaatga tgctaaacgt aaagtggcaa
     1801 ttgccctacg taatcgatac agaagaagtt tattagatga ggaatcaaag caagaaattt
     1861 cacctaaaaa tattttgatg attggaccaa ccggcgttgg taaaactgaa attgcaagaa
     1921 gaatggccaa agttgtcggc gcgccattta taaaagtaga agctactaaa tttactgagg
     1981 taggttatgt aggacgagat gttgaaagta tggttagaga tcttgttgat gtttcagtaa
     2041 gattagtcaa ggcgcagaaa aaatcattgg tacaagatga agcaacagct aaggccaatg
     2101 aaaaacttgt taagttatta gttccaagta tgaaaaagaa agcgtctcaa acgaataatc
     2161 ctttagagtc acttttcgga ggtgcaattc caaatttcgg acaaaataac gaagatgaag
     2221 aagaaccacc tactgaggaa attaaaacaa aacgttctga aattaagaga cagctagaag
     2281 aaggcaaact tgaaaaagaa aaggtaagaa ttaaagtcga acaagatcct ggtgctttag
     2341 gtatgctagg tacaaatcaa aatcagcaaa tgcaagagat gatgaatcaa ttaatgccta
     2401 aaaagaaagt tgagcgagaa gttgctgttg agacggcaag gaaaatctta gctgatagtt
     2461 atgcggatga actaattgat caagaaagcg ctaaccaaga agcgcttgaa ttagcagaac
     2521 aaatgggtat catctttata gatgaaatcg acaaagttgc gacgaataat cataatagtg
     2581 gtcaagatgt ctcaagacaa ggtgttcaaa gagatatttt acctatactt gaaggtagcg
     2641 ttattcaaac caaatatggt actgtgaata ctgaacatat gctgtttata ggtgctggag
     2701 ctttccatgt atctaagccg agtgacttga taccagaatt gcaaggtcgt tttccgatta
     2761 gagttgaact tgatagttta tcggtagaag attttgtaag aattttgaca gaaccaaaat
     2821 tgtcattaat taaacaatat gaagcattgc ttcaaacaga agaagttact gtaaacttta
     2881 ccgatgaagc aattactcgc ttagctgaga ttgcttatca agtaaatcaa gatacagaca
     2941 acattggtgc acgtcgactt catacaattt tagaaaagat gctagaagat ttatcattcg
     3001 aagcaccaag tatgccgaat gcagttgtag atattacccc acaatatgtt gatgataaat
     3061 taaaatcaat ttcaacaaat aaagatttaa gtgcatttat tctataaaaa tatacaaaag
     3121 gagaaaaatt catgagctta ttatctaaaa cgagagagtt aaacacgtta cttcaaaaac
     3181 acaaaggtat tgcggttgat tttaaagatg tagcacaaac gattagtagc gtaactgtaa
     3241 caaatgtatt tattgtatcg cgtcgaggta aaattttagg atcgagtcta aatgaattat
     3301 taaaaagtca aagaattatt caaatgttgg aagaaagaca tattccaagt gaatatacag
     3361 aacgattaat ggaagttaaa caaacagaat caaatattga tatcgacaat gtattaacag
     3421 tattcccacc tgaaaacaga gaattattca tagatagtcg tacaactatc ttcccaattt
     3481 taggtggagg ggaaagatta ggtacattag tacttggtcg agtacatgat gattttaatg
     3541 aaaatgattt ggtactaggt gaatatgctg ctacagttat tggtatggaa atcttacgtg
     3601 agaagcatag tgaagtagaa aaagaagcgc gcgataaagc tgctattaca atggcaatta
     3661 attcattatc ttattctgaa aaagaagcga ttgaacatat ctttgaagaa cttggcggta
     3721 cggaaggcct attaatcgca tcaaaagttg cagatagagt tggtattact agatctgtaa
     3781 ttgtaaatgc actacgtaaa ttagaaagtg ctggtgtaat tgaatcacgt tctttaggaa
     3841 tgaaaggtac tttcattaaa gttaaaaaag aaaaattctt agatgaatta gaaaaaagta
     3901 aataagtcga tgagtctggg acataattca atgtcctagt cgtgacgatg ttatcttggc
     3961 ggtagtcaat gaaatgactt tgatgattat gttgaagtca tttctttatt tttgtctaat
     4021 tttcaatcaa attgatattt cacattaact tgatagaatt acctttaaat ttatggaaaa
     4081 atgcttgaaa aacatttgct ttagacacgg cattatgtta tatttatttt cggctataaa
     4141 gccaatacac acatatcaaa cgtgattgtg taaagggtgc aatatttata tattgtcttt
     4201 acaatagttt gctatggagg taattaacca ataggaggaa tttataatgg cagtaatttc
     4261 aatgaaacaa ttactagaag cgggtgttca cttcggtcac caaacacgtc gttggaaccc
     4321 aaaaatgaaa aaatatatct tcactgagag aaatggtatt tatatcatcg acttacaaaa
     4381 aacagtgaaa aaagtagacg aggcatacaa cttcttgaaa caagtttcag aagatggtgg
     4441 acaagtctta ttcgtaggaa ctaaaaaaca agcacaagaa tcagttaaat ctgaagcaga
     4501 acgtgctggt caattctaca ttaaccaaag atggttaggt ggattattaa ctaactataa
     4561 aacgatctca aaacgaatca aacgtatttc tgaaattgaa aaaatggaag aagatggttt
     4621 attcgaagta ttacctaaaa aagaagtagt agaacttaaa aaagaatacg accgtttaat
     4681 caaattctta ggcggaattc gtgatatgaa atcaatgcct caagcattat tcgtagttga
     4741 cccacgtaaa gagcgtaatg caattgctga agctcgtaaa ttaaatattc ctatcgtagg
     4801 tatcgttgac actaactgtg atcctgacga aattgactac gttatcccag caaacgacga
     4861 tgctatccgt gcggttaaat tattaactgc taaaatggca gatgcaatct tagaaggtca
     4921 acaaggcgtt tctaatgaag aagtagctgc agaacaaaac atcgatttag atgaaaaaga
     4981 aaaatcagaa gaaacagaag caactgaaga ataatcaact gttgaatctg acttagatat
     5041 agtttaaatg ggtgataaga tattaatgct tatcaccttt tttaaaaaga aaatcgaggc
     5101 aaattacaaa tattcaatta gagtattggc aatcttgcct ataataatgc taaaatcata
     5161 atatataaaa tgataactta ttggaggaat aatgaatggc aactatttca gcaaaacttg
     5221 ttaaagaatt acgtgaaaaa actggcgcgg gtatgatgga ttgtaaaaaa gcgctaactg
     5281 aaactgatgg tgacatcgat aaagcgattg actacctacg tgaaaaaggt attgctaaag
     5341 cagctaaaaa agcagaccgt attgcggctg aaggtttagt acatgtagaa actaaaggta
     5401 acgacgcagt tatcgttgaa atcaactctg aaacagactt tgttgctcgt aacgaaggtt
     5461 tccaagagtt agttaaagaa atcgctaatc aagtattaga tacaaaagct gaaactgttg
     5521 aagctttaat ggaaacaact ttaccaaatg gtaaatcagt tgatgaaaga attaaagaag
     5581 caatttcaac aatcggtgaa aaattaagtg ttcgtcgttt tgctatcaga actaaaactg
     5641 ataacgatgc tttcggcgct tacttacaca tgggtggacg cattggtgta ttaacagttg
     5701 ttgaaggttc aactgacgaa gaagcagcaa gagacgttgc tatgcatatc gctgcaatca
     5761 accctaaata tgtttcttct gaacaagtta gcgaagaaga aatcaaccac gaaagagaag
     5821 ttttaaaaca acaagcatta aatgaaggta aaccagaaaa catcgttgaa aaaatggtgg
     5881 aaggacgttt acgtaaatac ttacaagaaa tttgtgctgt agatcaagac ttcgttaaaa
     5941 accctgatgt aacagttgaa gctttcttaa aaacaaaagg tggaaaactt gttgacttcg
     6001 tacgctatga agtaggcgaa ggtatggaaa aacgcgaaga aaactttgcg gatgaagtta
     6061 aaggacaaat gaaataatct gtcataaagt aaaacaagga agaagacacc tttaatgttg
     6121 ctttattaaa atgtaaatca ttctaataaa acgacaactg tgtcttcttt acttgtatat
     6181 gttacatata ttcacgatag agaggataag aaaatggctc aaatttctaa atataaacgt
     6241 gtagttttga aactaagtgg tgaagcgtta gctggagaaa aaggatttgg cataaatcca
     6301 gtaattatta aaagtgttgc tgagcaagtg gctgaagttg ctaaaatgga ctgtgaaatc
     6361 gcagtaatcg ttggtggcgg aaacatttgg agaggtaaaa caggtagtga cttaggtatg
     6421 gaccgtggaa ctgctgatta catgggtatg cttgcaactg taatgaatgc cttagcatta
     6481 caagatagtt tagaacaatt ggattgtgat acacgagtat taacatctat tgaaatgaag
     6541 caagtggctg aaccttatat tcgtcgtcgt gcaattagac acttagaaaa gaaacgcgta
     6601 gttatttttg ctgcaggtat tggaaaccca tacttctcta cagatactac agcggcatta
     6661 cgtgctgcag aagttgaagc agatgttatt ttaatgggca aaaataatgt agatggtgta
     6721 tattctgcag atcctaaagt aaacaaagat gcggtaaaat atgaacattt aacgcatatt
     6781 caaatgcttc aagaaggttt acaagtaatg gattcaacag catcctcatt ctgtatggat
     6841 aataacattc cgttaactgt tttctctatt atggaagaag gaaatattaa acgtgctgtt
     6901 atgggtgaaa agataggtac gttaattaca aaataaattt agaggtgtaa aataatgagt
     6961 gacattatta atgaaactaa atcaagaatg caaaaatcaa tcgaaagctt atcacgtgaa
     7021 ttagctaaca tcagtgcagg aagagctaat tcaaatttat taaacggcgt aacagttgat
     7081 tactatggtg caccaacacc tgtacaacaa ttagcaagca tcaatgttcc agaagcacgt
     7141 ttacttgtta tttctccata cgacaaaact tctgtagctg acatcgaaaa agcgataata
     7201 gcagctaact taggtgttaa cccaacaagt gatggtgaag tgatacgtat tgctgtacct
     7261 gccttaacag aagaacgtag aaaagagcgc gttaaagatg ttaagaaaat tggtgaagaa
     7321 gctaaagtat ctgttcgaaa tattcgtcgt gatatgaatg atcagttgaa aaaagatgaa
     7381 aaaaatggcg acattactga agatgagttg agaagtggta ctgaagatgt tcagaaagca
     7441 acagacaatt caataaaaga aattgatcaa atgattgctg ataaagaaaa agatattatg
     7501 tcagtataaa actaatatac aatgacatat taaaatgcca gtattaaacg ataatgtaac
     7561 atttaaaatg ggcatgttta attaaatcaa agatgcatgt gataatttaa attcacaatg
     7621 agcataaaaa tggtgtttaa acaagttaat taaacatata ctttataaat aataggcatt
     7681 aggtatattg ctataataaa gttatgtaat ttttaacctc agtatgtatg tcacatttct
     7741 ggtgtaaact gtaccgagtc agactttggt acagtttttt tatttgctta ttcaatgcat
     7801 taaatgagta tgataaaatg ataatgattg tttagtaact tatactatat gacagagatg
     7861 atcaggctcg gaggaaagac catgtttaaa aagctaataa ataaaaagaa cactataaat
     7921 aattataatg aagaattaga ctcgtctaat atacctgaac atatcgctat tattatggat
     7981 ggtaatgggc gatgggctaa gaagcgaaaa atgcctagaa ttaaaggtca ttacgaaggt
     8041 atgcaaacaa taaaaaaaat tactagggta gctagtgata ttggtgttaa gtacttaact
     8101 ttatacgcct tttccactga aaattggtca agacctgaaa gtgaagtaaa ttatattatg
     8161 aatttgcctg tcaatttctt aaagacattc ttaccggaac taattgaaaa aaatgtcaaa
     8221 gttgaaacaa ttggatttac tgataagttg ccaaaatcaa cgatagaagc aattaataat
     8281 gctaaagaaa agacagctaa taataccggc ttaaaattaa tatttgcaat taattatggt
     8341 ggcagagcag aacttgttca tagtattaaa aatatgtttg acgagcttca tcaacaaggt
     8401 ttaaatagtg atatcataga tgaaacatat ataaacaatc atttaatgac aaaagactat
     8461 cctgatccag agttgttaat tcgtacttca ggagaacaaa gaataagtaa tttcttgatt
     8521 tggcaagttt cgtatagtga atttatcttt aatcaaaaat tatggcctga ctttgacgaa
     8581 gatgaattaa ttaaatgtat aaaaatttat cagtcacgtc aaagacgctt tggcggattg
     8641 agtgaggagt agtatagtat gaaagttaga acgctgacag ctattattgc cttaatcgta
     8701 ttcttgccta tcttgttaaa aggcggcctt gtgttaatga tatttgctaa tatattagca
     8761 ttgattgcat taaaagaatt gttgaatatg aatatgatta aatttgtttc agttcctggt
     8821 ttaattagtg cagttggtct tatcatcatt atgttgccac aacatgcagg gccatgggta
     8881 caagtaattc aattaaaaag tttaattgca atgagcttta ttgtattaag ttatactgtc
     8941 ttatctaaaa acagatttag ttttatggat gctgcatttt gcttaatgtc tgtggcttat
     9001 gtaggcattg gttttatgtt cttttatgaa acgagatcag aaggattaca ttacatatta
     9061 tatgcctttt taattgtttg gcttacagat acaggggctt acttgtttgg taaaatgatg
     9121 ggtaaacata agctttggcc agtaataagt ccgaataaaa caatcgaagg attcataggt
     9181 ggcttgttct gtagtttgat agtaccactt gcaatgttat attttgtaga tttcaatatg
     9241 aatgtatgga tattacttgg agtgacattg attttaagtt tatttggtca attaggtgat
     9301 ttagtggaat caggatttaa gcgtcatttc ggcgttaaag actcaggtcg aatactacct
     9361 ggacacggtg gtattttaga ccgatttgac agctttatgt ttgtgttacc attattaaat
     9421 attttattaa tacaatctta atgctgagaa caaatcaata aacgtaaaga ggagttgctg
     9481 agataattta atgaatctca gaactccttt tgaaaattat acgcaata
//
LOCUS       DAMQWL010000090         9363 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.091, whole genome shotgun sequence.
ACCESSION   DAMQWL010000090 DAMQWL010000000
VERSION     DAMQWL010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9363
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.091"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            123..575
                     /gene="argR"
                     /locus_tag="PF788_002018"
     CDS             123..575
                     /gene="argR"
                     /locus_tag="PF788_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDG6304275.1"
                     /translation="MPKKSVRHIKIREIISNEQIETQDELVKRLNDYDLNVTQATVSR
                     DIKELQLIKVPIPSGQYVYSLPNDRKFHPLEKLGRYLMDSFVNIDGTDNLLVLKTLPG
                     NAQSIGAILDQINWEEVLGTICGDDTCLIICRSKEASDEIKSRIFNLL"
     gene            591..2270
                     /gene="recN"
                     /locus_tag="PF788_002019"
     CDS             591..2270
                     /gene="recN"
                     /locus_tag="PF788_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDG6304276.1"
                     /translation="MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQ
                     LIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHILKNMDIDVDEDFLLVKREIFSSG
                     KSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
                     KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIK
                     RIQNSEKLSLALNNAHMTLTDENAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFY
                     YILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKDISELIAYQEKLNNE
                     INKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKD
                     ANLEISFKKLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVK
                     SRGQTAILFDEVDSGVSGQAAQKMAEKMRDIAEYIQVICISHLPQVASMSDHHLLISK
                     SSKDDRTTTQVQELISDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR"
     gene            2421..3842
                     /gene="lpdA"
                     /locus_tag="PF788_002020"
     CDS             2421..3842
                     /gene="lpdA"
                     /locus_tag="PF788_002020"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDG6304277.1"
                     /translation="MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCL
                     HKGCIPTKSLLKSAEVFQTVKQAAMFGVDVKDANVNFENMLARKEDIINQMYQGVKHL
                     MQHNHIDIYNGTGRILGTSIFSPQSGTISVEYEDGESDLLPNQFVLIATGSSPAELPF
                     LSFDHDKILSSDDILSLKTLPSSIGIIGGGVIGMEFASLMIDLGVDVTVIEAGERILP
                     TESKQASQLLKKSLSARGVKFYEGIKLSENDINVNEDGVTFEISSDIIKVDKVLLSIG
                     RKPNTSDIGLNNTKIKLSTSGHILTNEFQQTEDKHIYAAGDCIGKLQLAHVGSKEGVV
                     AVDHMFEGNPIPVNYNMMPKCIYSQPEIASIGLNIEQAKAEGMKVKSFKVPFKAIGKA
                     VIDSHDTNEGYSEMVIDQSTEEIVGINMIGPHVTELINEASLLQFMNGSALELGLTTH
                     AHPSISEVLMELGLKAESRAIHV"
     gene            3858..4850
                     /locus_tag="PF788_002021"
     CDS             3858..4850
                     /locus_tag="PF788_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HDG6304278.1"
                     /translation="MIDYKSLGLSEEDLKVIYKWMDLGRKIDERLWLLNRAGKIPFVV
                     SGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTFLSAFGKKDDVNSGGK
                     QMPSHFSSRAKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFH
                     EGLNFAGVHKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLA
                     MYKAMKEARDRAISGQGSTLIEAVTSRMTAHSSDDDDQYRTKEERETLKKADCNEKFK
                     KELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVEEAYAFVYEEGSLN"
     gene            4850..5833
                     /locus_tag="PF788_002022"
     CDS             4850..5833
                     /locus_tag="PF788_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HDG6304279.1"
                     /translation="MAKLSYLEAIRQAQDLALQQNKDVFILGEDVGRKGGVFGTTQGL
                     QQKYGEDRVIDTPLAESNIVGTAIGAAMVGKRPIAEIQFADFILPATNQIISEAAKMR
                     YRSNNDWQCPLTIRAPFGGGVHGGLYHSQSIESIFASSPGLTIVIPSTPYDAKGLLLS
                     SIESNDPVLYFEHKKAYRFLKEEVPEEYYTVPLGKADVKREGEDLTVFCYGLMVNYCL
                     QAADILAADGINVEVVDLRTVYPLDKETIIDRAKHTGKVLLVTEDNLEGSIMSEVSAI
                     IAEHCLFDLDAPIMRLAAPDVPSMPFSPVLENEIMMNPEKILNKMRELAEF"
     gene            5846..7120
                     /locus_tag="PF788_002023"
     CDS             5846..7120
                     /locus_tag="PF788_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HDG6304280.1"
                     /translation="MEITMPKLGESVHEGTIEQWLVSVGDHIDEYEPLCEVITDKVTA
                     EVPSTISGTITEILVEAGQTVAIDTIICKIETADEKTNETTEEIQAKVDEHTQKSTKK
                     ASATVEQTSTAKQNQPRNNGRFSPVVFKLASEHDIDLSQVVGSGFEGRVTKKDIMSVI
                     ENGGTTAQSDKQVQTKSTSVDTSSNQSSEDNSENSTIPVNGVRKAIAQNMVNSVTEIP
                     HAWMMIEVDATNLVNTRNHYKNSFKNKEGYNLTFFAFFVKAVADALKAYPLLNSSWQG
                     NEIVLHKDINISIAVADENKLYVPVIKHADEKSIKGIAREINTLATKARNKQLTAEDM
                     QGGTFTVNNTGTFGSVSSMGIINHPQAAILQVESIIKKPVVINDMIAIRNMVNLCISI
                     DHRILDGLQTGKFMNHIKQRIEQYTLENTNIY"
     gene            7471..7908
                     /locus_tag="PF788_002024"
     CDS             7471..7908
                     /locus_tag="PF788_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HDG6304281.1"
                     /translation="MDMNFDLYMNGVVEQARNEIESAGYEQLTTAEDVDKVLKQDGTT
                     LVMINSVCGCAGGIARPAASHALHYDVLPDRLVTVFAGQDKEATQRAREYFEGYAPSS
                     PSFALVKDGKITEMIERHQIEGHDVMNVINQLQTLFNKYCEER"
     gene            7922..8902
                     /locus_tag="PF788_002025"
     CDS             7922..8902
                     /locus_tag="PF788_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HDG6304282.1"
                     /translation="MLKLNPYKIGFRTIKTAVGMTLGVIISKLLGLDNYASSAILVVL
                     CIKHTKVHSLQAIISRLVSCFLVLFLGSAIFSLLGQSPIVLGIIVLLFIPLTVVLKVQ
                     EGVITSCVILLHVFNAKSIDAHLIVNETLLLLIGLSIAFTMNLMMPSLDKQLDEYKCK
                     IEQQIADIFSKYSYICEKYEDTIAIEFEVLLLNIKKAKSIAFRDVKNHFVRNENSYYH
                     YFDMREEQVELLMRMKPLIESICHKDPLLNDVASLLKEIGLNVNSNDYTAMRLHNLYE
                     TRLKLDELPLPTTHKALNSRASIIQILNELEEYLQIKSQFGSLKMHSEVA"
     gene            complement(9029..9208)
                     /gene="prli42"
                     /locus_tag="PF788_002026"
     CDS             complement(9029..9208)
                     /gene="prli42"
                     /locus_tag="PF788_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stressosome-associated protein Prli42"
                     /protein_id="HDG6304283.1"
                     /translation="MLVISSQVKSFISYVVIINTKVIHLEAHKMQNKVLRIIIIVMLV
                     SVVLALLLTSIIPIL"
BASE COUNT         3459 a         1280 c         1777 g         2847 t
ORIGIN      
        1 taaatagata accaagatag ataaaccatg tttacccttt ttacgtaaag gtgtttagta
       61 gtcgtaaatc agtgcatgtg ttaaaataaa tgtataaata ttcgtaatca gaggtgttta
      121 ctgtgcccaa aaaatcggtt aggcatataa aaattagaga aattatttca aatgaacaga
      181 tagagacaca agatgaatta gttaaacgat taaacgatta tgatttaaat gtcactcaag
      241 caactgtttc tcgtgatatt aaagaactac aacttattaa agtacctata ccttcaggtc
      301 aatatgttta tagtttacca aatgatagaa aattccatcc tttagaaaaa ttgggacgtt
      361 atttaatgga ttcctttgtt aatatagatg gtactgataa tttacttgtt ctaaaaacat
      421 tacctggtaa tgcacaatct attggagcta tattagacca aatcaattgg gaagaagtac
      481 taggcacaat ttgtggtgat gatacttgtt taattatttg tcgaagcaaa gaggcaagtg
      541 atgaaatcaa gtcaagaatt ttcaatttgt tataaggatg cgatgagttt atgttacaaa
      601 ccttatcaat caagcaattt gctattattg aagaattaga aattcaattt tctgatggtt
      661 taactgtttt aagtggtgaa acgggttcag gtaaatcaat tattatagat gcaattggac
      721 aattaattgg aatgagagct tcatctgatt ttgtaagaca tggtgaaaaa aaggctgtca
      781 tcgaaggtat atttgatatt gacgagagta aagatgctat acatatattg aaaaatatgg
      841 atattgatgt agatgaagat tttttattag ttaaacggga aattttcagc tctggtaaaa
      901 gtctttgtaa aattaataat caaacagtta ctttacaaga tttacgaaaa gttatgcaag
      961 aattattaga tattcatggc caacatgaaa cgcagtcttt gttgaaacaa aaataccatt
     1021 taacattatt ggataattac gcagaatcac gttatcaaga tttgttggat aaatatcacc
     1081 aaacttttca aaattataaa gccaaaaagc aagagttaga agatttagaa tcagcagacc
     1141 aagcattgct acagcgttta gatttaatga aattccaatt agaagaattg tctgaagcac
     1201 atctaaaaga aggcgaaata gagcaacttg aaatagatat taaacgcatt caaaactctg
     1261 aaaaattaag cttagcgctt aataacgcac atatgacatt aacggatgaa aatgctatca
     1321 ctgatcgttt atatgaacta agcaaccatt tgttaacaat aaacgatata gttccaaaca
     1381 aatatgacaa attaaaagaa gatattgatc aattttacta cattttagaa gatgcaaaac
     1441 atgagttata tgatgaaatg gctaatacag aattcgacga acaagtgtta aacgagtatg
     1501 aatctcgtat gaatttgctg aataatttaa aacgtaaata tggaaaagat atttcagaat
     1561 taatcgcata tcaagaaaag cttaataatg aaatcaataa aattgaaaac tatgaacaaa
     1621 gtacatcgca gttacgagaa gaaataaatg cattgtataa tcaagttata gaggttggac
     1681 aagcgttatc aaagcagcgt cgtatagtcg ctagggagtt aagagaccac attgtatcgg
     1741 aaattcaaaa cttacaaatg aaagacgcaa atcttgagat ttcatttaaa aaattagaag
     1801 aaccgaatat tgatggaatc gaatttgtag aatttttaat cagtccaaat aaaggggaac
     1861 cattaaaaag tttaaataaa attgcgtcag gtggagaact ttctagaatt atgttagcgt
     1921 taaaaagtat ttttgttaaa tcgagaggtc aaactgcaat tttattcgat gaggttgact
     1981 caggtgtatc tggacaagct gcacaaaaaa tggcagagaa aatgcgagat atagcagaat
     2041 atatacaagt tatttgtatc tctcacttac cacaagttgc atcgatgagc gaccatcatt
     2101 tattaatttc gaaatcatca aaagatgatc gtacaacaac acaagttcaa gagttaatta
     2161 gcgatgataa agtagatgaa attgcacgaa tgatttcagg tgcaagtgtt actgatttaa
     2221 ctcgagaaaa tgcaagagaa atgatacaac acaatcaaag acgtagataa tttccaaagt
     2281 gtgttgaata ctcatttatg gatttattta tgtgcattca aactaaatag acaatcatgt
     2341 aaaataggta attaatggac atgaaaacta tgtattaata aattttcaat ggatatatat
     2401 cattagttag gagtaagaac atgtcagaga aacaatatga tttagtcgtt ctcggtggag
     2461 gtactgcagg atatgttgct gcgatacgtg cgtctcaatt aggtaaaaaa gtggcaatag
     2521 tggaacgaca actattagga ggtacttgtc tccataaagg ttgtattcct actaaatcgc
     2581 tgcttaaatc tgctgaagta tttcaaacag taaaacaggc agcaatgttt ggcgttgatg
     2641 tcaaagatgc taatgttaat tttgaaaata tgttggcacg aaaagaagac attattaatc
     2701 aaatgtatca aggtgtaaag catttaatgc aacacaatca cattgacatt tataatggca
     2761 cgggacgtat tctaggtaca tctatatttt cacctcaaag tggcacaatt tctgtcgaat
     2821 atgaagatgg tgaatcagac ttattaccca accaatttgt attaattgca actggttctt
     2881 cgcctgcaga gttgccattc ttatcatttg atcatgataa aattttatct agcgatgata
     2941 tattatcatt aaagacgtta ccatcaagta ttggtattat tggtggtggt gttatcggaa
     3001 tggaatttgc atcattgatg atagatttag gtgttgacgt aacagttata gaagcaggtg
     3061 aaagaatttt accaactgaa agtaaacaag cttcacaact attaaaaaaa tcattgtcag
     3121 cacgtggtgt taaattctat gagggaataa aactttctga aaatgatata aatgttaacg
     3181 aagatggtgt tacgtttgaa atttcctcag acataattaa agtagataaa gtgttgctat
     3241 cgattggtag aaaacctaac acatcagata ttggtttaaa caacactaaa ataaaacttt
     3301 caacatcagg acatatttta acgaacgaat ttcaacaaac tgaagataaa catatttatg
     3361 cagctggtga ttgtatagga aaattacaat tggcacatgt tggatcaaaa gaaggtgttg
     3421 tggctgttga tcatatgttt gaggggaacc caatcccagt aaactataac atgatgccta
     3481 agtgtattta ttcacaacct gaaattgctt ctatcggttt aaacattgaa caagcaaagg
     3541 cagagggaat gaaagttaaa agttttaaag taccatttaa agcaattggt aaagcagtga
     3601 ttgatagcca tgacacaaac gaagggtata gcgaaatggt gattgatcaa tcaactgaag
     3661 aaattgtggg tattaatatg attggtccac atgtaacaga attgattaat gaggcatcac
     3721 tgttacagtt catgaatggc tcggcattag aattaggact aacaacacac gcacatcctt
     3781 ccatctctga agtgttgatg gaattaggat tgaaagcaga aagtagagct attcacgtat
     3841 aaataggagg atttaacatg attgattata aatcattagg ccttagcgaa gaagacctaa
     3901 aagtaatata taaatggatg gatttaggta gaaaaataga tgaaagactg tggttattga
     3961 accgtgcagg taaaattcca tttgttgtaa gtggtcaagg acaagaagca actcagattg
     4021 ggatggcata cgcattagaa gaaggtgata ttacagcgcc ttattataga gatctagctt
     4081 tcgttactta tatgggtatc tcagcgtatg atacgttttt atcagcgttt ggaaagaaag
     4141 acgatgttaa ctctggtgga aaacaaatgc catcacactt tagtagtaga gctaagaata
     4201 ttttgtctca aagttcaccg gtagcaactc aaatacccca tgctgttggt gctgctttag
     4261 ctttaaaaat ggatggtaag aagaaaattg caacagcaac tgttggtgaa ggtagctcaa
     4321 accaaggtga cttccatgaa ggtttaaact tcgcgggtgt acacaaactt ccttttgtat
     4381 gtgtcattat aaataataaa tatgcaattt cagtacctga ttcattacaa tacgcagctg
     4441 aaaaattatc ggatagagca cttggttacg gtatacatgg tgaacaagta gatggtaatg
     4501 atccattagc aatgtataaa gcgatgaaag aagcaagaga tcgagctatt tctggtcaag
     4561 gttcaacttt gattgaagca gtaacaagtc gtatgacagc tcattcatca gatgatgacg
     4621 accaatatcg tacgaaagaa gagcgtgaaa cgcttaaaaa agcagactgc aatgaaaagt
     4681 tcaaaaaaga gttgctttca gctggcatta tcgatgatgc ttggttggca gaaatagaag
     4741 cggagcataa agacatcatc aataaagcga caaaggctgc tgaagacgcg ccatatccaa
     4801 gtgtcgaaga agcctatgca tttgtgtacg aagaagggag tcttaactaa tggctaaatt
     4861 atcttattta gaggcgatac gccaggcaca agacttagca ttacaacaaa ataaagatgt
     4921 gtttattctt ggtgaagatg ttggtagaaa aggtggcgta tttggtacta ctcaaggact
     4981 gcaacaaaaa tatggtgaag acagagttat cgatacgcca ttagctgagt caaatattgt
     5041 tggaactgcc attggtgcag ctatggtagg taaaagacca attgcagaaa ttcaatttgc
     5101 agattttatt ttacctgcga caaatcaaat tattagtgaa gctgcgaaaa tgcgttatcg
     5161 ttcaaataat gattggcaat gcccattaac gattcgtgca ccatttggtg gcggtgttca
     5221 cggaggacta tatcattcac aaagtattga aagtatattt gcttcatcgc caggtttaac
     5281 aattgttatt ccttccacac cgtatgatgc taaagggctt ttattatcat ctatcgaatc
     5341 aaatgatcca gtattgtact ttgagcataa aaaagcttat cgtttcttaa aggaagaagt
     5401 gccagaagaa tattacactg tacctttagg aaaagcagat gtgaaacgtg aaggtgaaga
     5461 tttaacagta ttttgttatg gattaatggt caattattgt ttacaagcag cggatatttt
     5521 agctgcagac ggtatcaatg ttgaagtcgt tgatttacga actgtttatc cattagataa
     5581 agaaacaatt attgatcgtg ctaaacatac aggtaaagtt ttacttgtaa ctgaagataa
     5641 tttagaaggt agtattatgt cagaagtgtc agcgattatt gcagagcatt gcttgttcga
     5701 tttagatgca ccaatcatgc gtttagctgc tccagatgta ccatctatgc cattttctcc
     5761 tgtattagaa aatgaaatta tgatgaatcc agaaaaaatc ttaaataaaa tgcgtgaatt
     5821 agcagaattc tagggaggga aagtcatgga aataacaatg cctaagttag gtgagagtgt
     5881 tcatgaaggc accattgaac aatggttagt ttctgttggt gatcatattg atgaatatga
     5941 accattatgt gaagttatta cagataaagt gacagctgaa gtcccttcca cgatatcagg
     6001 aacaattaca gaaattttag ttgaagcggg gcagacagta gctattgata caattatctg
     6061 taaaattgaa actgctgatg aaaagacaaa tgaaacaact gaagagatac aagcaaaagt
     6121 ggatgagcat actcagaaat ctactaaaaa agctagtgca acagtggaac agacatctac
     6181 tgctaaacaa aatcaaccac gtaataatgg tcgcttttca cctgttgtat ttaaactcgc
     6241 ttcagagcat gacattgatt tatcacaagt tgtaggtagt ggatttgaag gtcgtgtaac
     6301 taagaaggat ataatgtcag ttattgaaaa tggtggtacc acagctcaat ctgacaaaca
     6361 agttcaaaca aaatcaacat cagtagatac atcaagtaac caatcatctg aagacaatag
     6421 tgaaaacagc acaataccag taaatggtgt gcgtaaagca attgcgcaaa atatggttaa
     6481 tagtgtaaca gagattccac atgcatggat gatgattgaa gtagatgcta caaatcttgt
     6541 gaatacgaga aatcattata aaaacagctt taaaaataaa gaaggatata atctaacgtt
     6601 ctttgctttc tttgtaaaag ctgtagcaga tgctttaaaa gcatatcctt tattaaatag
     6661 tagctggcaa ggaaatgaaa ttgtcttaca taaagacatt aatatttcaa ttgctgttgc
     6721 tgatgaaaat aaattatacg tacctgtgat taagcatgca gacgaaaagt caatcaaagg
     6781 tatagctaga gaaattaata ctttagcaac gaaagcgcgt aataagcaat tgacagctga
     6841 agatatgcag ggcggtacat ttacggtaaa taatactggt acatttggtt cagtatcatc
     6901 aatgggtatt ataaatcatc cacaagcagc gattttacaa gtagaatcaa tcattaaaaa
     6961 gccagtagta attaatgata tgattgcaat tcgtaacatg gttaatttat gtatttcaat
     7021 tgatcatcgt attttagatg gtttacaaac aggtaaattt atgaatcata ttaaacagcg
     7081 tatcgaacag tatactttag aaaatacaaa tatatattag tgataacata gatgcatcta
     7141 tcgacaactt gttttatctt gttcttgtcg atggatgtat tattttttgg cactaaaata
     7201 tgtgcaatat attcaaaaaa gataaagaac aataatcaac atggttgaat gcatttttgc
     7261 agtaaagtca aaataagaca tcatacttga aacatattaa tgaaaacatg tgaacaaatt
     7321 agttaccatg attttaagca caataatgtt tggtatattg ttaaaattgt gtctaaatat
     7381 aggtgtgatt cagattagtt tattgaacaa tatgttatta attagtagaa tgaggatagt
     7441 ttaaatataa agggataggt gattgaactt atggacatga atttcgattt atacatgaac
     7501 ggtgttgtag aacaagcaag gaatgaaatt gaatctgcgg gatatgagca attaactact
     7561 gcagaagatg ttgacaaagt tcttaaacaa gatggtacaa cactagttat gatcaattct
     7621 gtatgtggtt gtgcaggtgg tatcgcaaga ccagcagcat cacatgcttt acattatgac
     7681 gtattacctg atcgtctagt gacagtattt gctggacaag ataaagaagc gacacaaaga
     7741 gcgcgtgaat acttcgaagg ttatgcgcct tcaagtccgt catttgcatt agtaaaagat
     7801 ggaaagatta cagaaatgat tgaaagacat caaatcgaag gtcatgatgt gatgaacgta
     7861 attaatcaat tacaaacatt attcaataaa tattgtgaag aaagataaga ggcgctaacc
     7921 catgttaaag ttaaatcctt acaagattgg atttagaaca ataaaaacag cagtgggtat
     7981 gactttaggt gtaattatta gtaagctgtt aggtttagat aattatgctt caagcgccat
     8041 attagtcgta ttatgtatta aacatacaaa agtacattcg ctacaagcga ttatttcaag
     8101 attagtatca tgttttttag tattgttttt aggttcagca atatttagtt tattaggtca
     8161 gagtccaatt gtactcggta ttatcgtatt gttatttata ccattaactg tcgtattaaa
     8221 agtacaagaa ggtgtcatta cgagttgcgt tatattactt catgttttta atgcaaaatc
     8281 aattgatgca catttaattg ttaatgaaac attattactg ttaattggac taagcattgc
     8341 atttacaatg aatttaatga tgccaagttt agacaaacaa ctagacgaat acaaatgtaa
     8401 aattgagcaa caaattgctg atatttttag taaatatagt tatatttgtg aaaaatatga
     8461 agataccatt gcgattgaat ttgaagtgtt acttttaaat attaaaaagg cgaagtctat
     8521 cgcgttccga gatgttaaaa atcattttgt tagaaacgaa aattcatact atcattattt
     8581 tgatatgcga gaagagcaag tggaattgtt aatgagaatg aaaccgctca tcgaaagtat
     8641 ctgtcataaa gatccgcttt taaatgatgt tgcgtcactg ctgaaagaaa ttggtctaaa
     8701 tgtgaatagt aatgactata cagcaatgcg tttacacaat ttgtatgaga cgcgtttgaa
     8761 attggatgaa ctgccattgc caacaacaca caaagcgctt aactcgagag caagtattat
     8821 tcaaatatta aatgaattag aagaatattt acaaatcaaa tcgcaatttg gttcattgaa
     8881 aatgcatagt gaagtagctt aaaaaataat ccatccgtat gagccatgtt tgaaagtaat
     8941 cgttgcaata cgataactta ttaatacatg cgtttataat ggatggattt ttaattgtat
     9001 gattttgtat aggtagttga gatatagttt ataaaattgg aatgatactc gttaataaca
     9061 atgctaatac aactgataca agcataacga taatgataat tcttaaaact ttattttgca
     9121 ttttgtgtgc ctccaaatga ataacctttg tattaataat tacgacataa gatataaaac
     9181 ttttaacttg agacgatata actagcaatc atcataaagg aatataataa aaaacatgag
     9241 taagtttgct tatgtcattt tcctcattat acgatatctt tgaaaaatca atcaatatat
     9301 ttttgacaaa gcttagtttg agttacaata attatatata ataaattgaa aataatatga
     9361 cac
//
LOCUS       DAMQWL010000091         9316 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.092, whole genome shotgun sequence.
ACCESSION   DAMQWL010000091 DAMQWL010000000
VERSION     DAMQWL010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9316
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.092"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..179
                     /locus_tag="PF788_002027"
     CDS             <1..179
                     /locus_tag="PF788_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000711814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ArgR family transcriptional regulator"
                     /protein_id="HDG6304284.1"
                     /translation="LNNYVLIKTSPGFAQSISYYIDQLQMKEILGIIGGNDTLMILTS
                     SNEIAEFVCYQLFP"
     gene            448..1683
                     /gene="arcA"
                     /locus_tag="PF788_002028"
     CDS             448..1683
                     /gene="arcA"
                     /locus_tag="PF788_002028"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HDG6304285.1"
                     /translation="MVQGPIQVNSEIGKLKTVLLKRPGKELENLVPDHLSGLLFDDIP
                     YLKVAQEEHDKFAQTLRDEGIEVVYLEKLAAESITEPEVRENFINDILTESKKTILGH
                     ETEIKEFFSKLSDQELVNKIMAGVRKEEIQLETTHLVEYMDDRYPFYLDPMPNLYFTR
                     DPQASIGRGMTINRMYWRARRRESIFMTYILKHHPRFKDKDVPVWLDRNSPFNIEGGD
                     ELVLSKDVLAIGISERTSAQAIEKLARNIFKDANTSFKKIVAIEIPNTRTFMHLDTVL
                     TMIDYDKFTVHAAIFKEENNMNIFTIEQNDGKDDIKITRSSKLRETLAEVLEVEKVDF
                     IPTGNGDVIDGAREQWNDGSNTLCIRPGVVVTYDRNYVSNQLLRDKGIKVIEITGSEL
                     VRGRGGPRCMSQPLFREDI"
     gene            1769..3190
                     /gene="arcD"
                     /locus_tag="PF788_002029"
     CDS             1769..3190
                     /gene="arcD"
                     /locus_tag="PF788_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine-ornithine antiporter"
                     /protein_id="HDG6304286.1"
                     /translation="MDENKLGKTSLIGLVIGSMIGGGAFNIISDMGGQAGGLAIIIGW
                     IITAIGMISLAFVFQNLTNERPDLDGGIYSYAQTGFGDFIGFSSAWGYWFAAFLGNVA
                     YATLLMSAVGNFFPIFKGGNTLPSIIIASILLWGVHFLILRGVETAAFINSIVTVAKL
                     IPIFLVIICMIVVFNFSTFKSGFYGMTSGSVGVFSWGDTMAQVKSTMLVTVWVFTGIE
                     GAVVFSGRAKSKKDVGTATVIGLISVLVIYFLMTVLAQGVIQQNQISKLANPSMAQVL
                     EHIVGHWGSVLVNIGLIISVLGAWLGWTLLAGELPFIVAKDGLFPKWFAKENKNKAPV
                     NALIITNILVQLFLISMLFTDSAYQFAFSLASSAILIPYTLSAFYQVKYTIQNKSKAN
                     LKQWIIGIIASIYTIWLVYAAGLDYLLLTMLLYIPGLLVYSYVQRDNNKHLTKLDYTL
                     FIFIIVLAIIGIVRLITGNISVF"
     gene            3232..3921
                     /locus_tag="PF788_002030"
     CDS             3232..3921
                     /locus_tag="PF788_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002485352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDG6304287.1"
                     /translation="MYEENIYIKNSEYEFDNNLKQLASYLNIPVSIVRPYKEDLTLYQ
                     YKKGQVIYHSTDQIKFVYFLVNGCILHESSNITGDNYLRLSKDENIFPMNFIFNETPA
                     PYEICTALTDCKILTLPKDLLEYLCRKHNEIFESLFKKLNETIQFQVEYIMALRANSA
                     KERIERILQILCLSIGDDNGEFYELKQIMTVQLISNLSGLNRKTTGEIIRELKIENII
                     YQDKRNWIIKK"
     gene            3959..4957
                     /gene="argF"
                     /locus_tag="PF788_002031"
     CDS             3959..4957
                     /gene="argF"
                     /locus_tag="PF788_002031"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDG6304288.1"
                     /translation="MKNLRNRNFLTLLDFTQKEMEFLLNLSEDLKRAKYAGIEQQKMK
                     GKNIALLFEKDSTRTRCAFETAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYD
                     GIEYRGFSQRVVEDLAKYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKPYNEINFTY
                     VGDGRNNVANALMQGAAIMGMTFHLVCPKELNPTDELLNRCNDIADKNGGEILITDDI
                     DEGVKGSDVIYTDVWVSMGEPDEVWEKRIKLLEPYRVTKELMKKTGNPHTIFEHCLPS
                     FHDTETIIGKQIQEKYGLTEMEVTNEVFESEQSVVFQEAENRAHTIKAVMVATLGE"
     gene            4977..5906
                     /gene="arcC"
                     /locus_tag="PF788_002032"
     CDS             4977..5906
                     /gene="arcC"
                     /locus_tag="PF788_002032"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002498813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HDG6304289.1"
                     /translation="MSKIVVALGGNALGQSPKEQLDLLKSTSKSLVSLIDKGYEIVIS
                     HGNGPQVGSINLGLNYAAEHKQGPPFPFPECGAMSQAYIGYQMQESLQNELHSMGIDK
                     QVVTLVTQVQVASDDSAFNNPTKPIGLFYTKEQADKFTKEKGYTFVEDSGRGYRRVVP
                     SPQPISIVELDSIETLITHGTLVIAAGGGGIPVIKENEVYTGVDAVIDKDKTSALLAA
                     HLQSDQLIILTAVDHVYINYGKENQRGLDEVSVDEMKKHISDGQFAKGSMLPKVEAAL
                     QFLEKNTKGSVLITSLAGLGDALDGKIGTLIKN"
     gene            complement(6006..7006)
                     /locus_tag="PF788_002033"
                     /pseudo
     CDS             complement(6006..7006)
                     /locus_tag="PF788_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558285.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            7038..7207
                     /locus_tag="PF788_002034"
                     /pseudo
     CDS             7038..7207
                     /locus_tag="PF788_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004399387.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
     gene            7814..8164
                     /locus_tag="PF788_002035"
     CDS             7814..8164
                     /locus_tag="PF788_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002502216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304290.1"
                     /translation="MKTTTQELKQYMTRLFQLSNNETWECETLEEAAENILPKRFIND
                     SPLAHLILETYTYYNNELHELSIYPFLMYSNNQLISIGYLDHFDMDFLYLTDTKNTII
                     DERHLLKEGGNNHE"
     gene            8251..8562
                     /locus_tag="PF788_002036"
     CDS             8251..8562
                     /locus_tag="PF788_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002505017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304291.1"
                     /translation="MKINRYITRGISEQLSLDLQILLWNMVKDRDNQLNTDYLHIFKL
                     QEDDNMLSITHEQEQPAYKLEYHYTNYIKNQNALPKKVYVIREDDVDAFYYVMLLPEE
                     Y"
     gene            8578..9081
                     /locus_tag="PF788_002037"
     CDS             8578..9081
                     /locus_tag="PF788_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012086592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1643 domain-containing protein"
                     /protein_id="HDG6304292.1"
                     /translation="MNTIKSTIHTEAIFSDDEQHRYLLKKIWDDKKPACTVITMYLHL
                     DGVLSLDLTTVLILNQLANSEQYGAVYLVNLFSNIKTPENLKHIKEPYDEHTDIHLMK
                     AISESDTVILAYGAYAKRPVVIDRVEQVMEMLKPHKKKVKKLINPVTNEVMHPLNPKA
                     RQKWTLK"
     gene            9095..>9316
                     /locus_tag="PF788_002038"
     CDS             9095..>9316
                     /locus_tag="PF788_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304293.1"
                     /translation="MNHDNTIQSNWRTVASCLASQNYISIVKGLVHHFTAIDDEEILD
                     KIYEEFINDDSITTVLNNDLQTIINHYLSK"
BASE COUNT         3362 a         1375 c         1590 g         2989 t
ORIGIN      
        1 cgctaaataa ctatgtctta ataaaaacat ctcctggctt tgctcaaagt ataagttatt
       61 acatagatca attacaaatg aaagaaatat taggaattat tggaggtaac gatactttga
      121 tgattttgac ttcttcaaat gaaatagcag aatttgtttg ttatcaatta ttcccttaaa
      181 aattaaatga ttatattaat aggaatgatt actaatacaa aaaaatgagt aaaaaatctt
      241 tttgcttgaa taagataagg ttttaacaat gagatttttc aaattattca ctattatata
      301 gtacaaaata catattcata caaaattttg cattgaataa atctatatat gtgaaaaccc
      361 tccctaaaca attgtgaatt aaatcacacg atgttttttg aaagcgtttt ataatgtgaa
      421 tgtaataaag caaaggagga atttgaaatg gtacaaggac ccattcaagt aaatagtgaa
      481 ataggcaaat tgaaaactgt gttgttaaaa agaccaggaa aagaattaga aaatttagta
      541 cctgatcatt taagtggttt attattcgat gatattccct acttaaaagt tgcacaagaa
      601 gagcatgaca aatttgctca aactttgaga gatgaaggaa tcgaagtagt ttatttagaa
      661 aaacttgcag cagaatctat tactgagcca gaagtacgcg agaacttcat aaacgacata
      721 ttaacagaat ctaaaaagac aatattaggt catgaaactg aaattaaaga attcttttca
      781 aagttatctg accaagaact tgtaaataaa atcatggctg gcgtacgtaa agaagaaatt
      841 caacttgaaa caacccattt agtagaatat atggatgata gatatccatt ttacttagat
      901 ccaatgccca acctttattt tacaagagat ccccaagctt caattggtag aggaatgaca
      961 attaacagaa tgtattggag agcacgacgt agagaatcta tttttatgac atatatactg
     1021 aaacatcatc caagatttaa agataaagat gtaccagtat ggttagatcg taactcacca
     1081 tttaatattg aaggtggaga tgaattagta ttatcgaaag atgttttagc tattggtata
     1141 tcagaacgta catcagctca agcaatagaa aagttagcac gtaatatttt caaagatgca
     1201 aacacaagtt ttaaaaaaat cgtagctatt gaaataccta atacacgtac atttatgcac
     1261 ctagatacag tactaactat gattgactac gataagttta cagtacatgc agcaatattt
     1321 aaagaagaaa ataatatgaa tatatttacc atagaacaaa atgatggtaa ggacgatata
     1381 aaaattactc gttctagcaa gttacgtgaa acacttgctg aagttttaga agtagaaaaa
     1441 gtggacttta ttccaacagg taatggcgac gttattgatg gtgcacgtga acaatggaat
     1501 gatggctcaa acacattatg tattcgacca ggggttgtgg tgacatacga tcgcaactat
     1561 gtatcaaacc aacttttacg cgacaaagga attaaagtga ttgaaattac tggtagtgaa
     1621 cttgtacgtg gacgcggagg cccaagatgt atgagtcagc cgttatttag agaagatatt
     1681 taaatttgaa aggtggtaaa agtcacaagt aattcattca ttaaatcaaa taacaagatt
     1741 tttaccacct ttattagggg agattaatat ggatgaaaat aaattaggta aaacttcctt
     1801 aattggttta gtcataggct ctatgatagg cggtggtgca ttcaatatca tctcagatat
     1861 gggtggccaa gctggtggac ttgcaataat tatcggttgg ataataactg ctattggtat
     1921 gatttctctt gctttcgtat ttcaaaattt aacaaatgag cgaccagatc ttgatggagg
     1981 aatttatagt tatgctcaaa cagggtttgg agattttatt ggtttttcaa gtgcttgggg
     2041 atattggttt gcagcatttc taggtaatgt ggcttatgca accctattaa tgtcagctgt
     2101 gggtaacttt ttccctatat ttaaaggagg taacacactt ccaagtatta tcatagcatc
     2161 aattttatta tggggtgtac attttttaat acttagaggt gtagaaactg cagcgtttat
     2221 aaatagtatt gttacagtag ctaaattaat acctatattt ctagttatta tatgcatgat
     2281 agttgtattc aacttcagta cttttaaatc cggtttttat ggtatgacta gtggaagtgt
     2341 tggcgttttt agttggggag atacaatggc acaagtaaaa agtactatgt tagtaactgt
     2401 atgggtattc acagggattg aaggagccgt tgtcttttct ggacgtgcaa agtctaaaaa
     2461 ggatgtagga actgctaccg ttattggttt gatttctgtg ctagtcattt atttcttaat
     2521 gactgtacta gcccaaggtg tcattcagca gaaccaaatt tcaaaacttg ctaatccatc
     2581 aatggcacaa gtattagaac atattgtagg tcattggggt tcagtgttag ttaatatagg
     2641 cttaattatc tctgttttag gagcttggtt aggatggaca ttactagctg gtgaattacc
     2701 attcattgta gctaaagatg gacttttccc gaaatggttt gctaaagaaa ataagaataa
     2761 agctccggtc aacgctttaa ttattactaa tatattagtt cagttatttt taattagtat
     2821 gttgtttaca gatagtgcct atcagtttgc gttttcactt gcatcaagtg caatcttaat
     2881 tccatataca ctcagtgctt tttaccaggt taaatatact attcaaaata aatctaaagc
     2941 taatttaaaa caatggataa taggaattat tgcatctatt tacacaattt ggttggttta
     3001 tgcagctgga ttagattatt tactattaac gatgttgtta tatatacctg gattactcgt
     3061 atacagctac gtacaaaggg ataataacaa acatttgaca aaattggatt atacgttatt
     3121 catattcatc attgtacttg caataatagg aatagttcgt ttgattacag gtaatatttc
     3181 tgtattttaa gttatgattt aaactaagta atttttaagg ggtttatagt tatgtatgaa
     3241 gaaaatattt atattaaaaa ttcagaatat gaatttgata ataatcttaa acaattagca
     3301 tcatacttaa atattcctgt tagtattgtt agaccttata aagaggattt aacactttat
     3361 caatataaaa aaggacaagt catatatcat tcaactgatc aaataaaatt tgtatacttt
     3421 ttagtaaatg gttgtatttt acatgaatct tctaatatta ctggtgacaa ttatttaaga
     3481 ttaagtaaag acgaaaatat atttccaatg aacttcatat ttaatgaaac ccctgcacca
     3541 tatgaaatat gtacagcttt gacagattgt aaaatattaa ctttaccgaa agatttactt
     3601 gagtatttat gtagaaagca taatgaaata tttgaaagtc tcttcaagaa acttaatgag
     3661 actattcaat ttcaagtaga atatattatg gcgttaagag ctaattcagc taaagaaaga
     3721 attgaaagaa tactacaaat tttatgcctt tcaattgggg atgataatgg agaattctat
     3781 gaattaaaac aaattatgac tgttcaatta ataagtaatt tatctggact taacagaaaa
     3841 actactggtg aaataatcag agaattaaaa atagaaaata ttatatatca agataaaaga
     3901 aattggatta taaaaaaata acatgaataa aatattaatt gaaaaggaga tattcaaaat
     3961 gaaaaattta agaaatagaa actttttaac tttgttagac ttcacacaaa aagaaatgga
     4021 atttttactt aatttatctg aagatcttaa acgcgcaaaa tatgcaggaa tagaacaaca
     4081 aaaaatgaaa ggtaaaaata tcgctctact ttttgaaaaa gattcaacac gcactcgatg
     4141 tgcatttgaa acagcggctt atgatcaagg tgcacatgta acataccttg ggccaacagg
     4201 ttctcaaatg ggtaaaaaag agtctaccaa agatactgct cgtgttttag gtggaatgta
     4261 tgatggcata gaatatcgtg gattctcaca aagagtagtt gaggatttgg caaaatattc
     4321 tggcgttccc gtatggaatg gtttaacaga tgaagatcat cctacacaag tacttgctga
     4381 ttttttaaca gctaaagaag tattgaaaaa accatataat gaaattaact tcacatatgt
     4441 tggagatgga cgtaataacg ttgcaaatgc cttaatgcaa ggagcagcaa tcatgggcat
     4501 gactttccat cttgtatgtc ctaaagaact aaatccaact gatgaattat taaatcggtg
     4561 taatgatata gctgacaaaa acggtggtga aatccttata actgatgata ttgatgaagg
     4621 tgtcaaagga tctgatgtaa tttacacaga tgtttgggta tctatgggtg aacctgatga
     4681 agtttgggaa aaacgtatca aattattaga accataccgt gtaactaaag aattaatgaa
     4741 aaaaacaggt aatccacata caatttttga acattgctta ccatcattcc atgatactga
     4801 aacaataatc ggtaaacaaa ttcaagaaaa atatggtcta actgaaatgg aagtaacaaa
     4861 tgaagtattt gaaagtgaac aatcagttgt tttccaagaa gcagaaaata gagcacatac
     4921 aataaaagca gtcatggtag caacattagg agagtaaatg aaaggaggat ataaatatgt
     4981 ctaaaatcgt cgtagctttg ggtggtaacg ctttaggaca atcgcctaaa gaacaattag
     5041 atttattaaa aagtacatct aaatctctag taagtttaat cgataaagga tacgaaattg
     5101 taattagtca tggtaatggt ccacaagttg gaagtattaa cttaggttta aattatgcgg
     5161 cggaacacaa acaaggtcct ccttttcctt tccctgaatg tggtgctatg agtcaagctt
     5221 atattggcta tcagatgcaa gaaagtttac aaaacgaact tcattcaatg ggcatagata
     5281 aacaagttgt tacgctagta acacaagttc aagttgcaag cgatgattct gctttcaata
     5341 accctactaa accaattgga ttattttata caaaagagca ggctgataaa tttacgaaag
     5401 aaaaaggtta tacttttgta gaagattctg gacgcggcta tcgtcgcgtt gtcccttccc
     5461 cacaacctat aagtatagtt gagttagata gtatagaaac attaatcact catggaacac
     5521 tagttatcgc tgccggcggt ggtggaattc cagtaattaa ggaaaatgaa gtttatacag
     5581 gtgttgatgc agttattgat aaagataaaa cgagtgcttt attagcagca catttacaat
     5641 ctgatcaatt aatcatatta actgctgtgg accatgttta cattaactat ggaaaagaaa
     5701 accaaagagg tctcgatgaa gtgtctgtgg atgaaatgaa aaaacatatc tctgatggtc
     5761 aatttgctaa aggaagtatg cttccaaaag ttgaagctgc acttcaattt cttgaaaaaa
     5821 atactaaagg cagtgttttg attacatctc tagcaggatt aggggacgct ttagacggta
     5881 aaataggaac attaattaag aattgaaatt ataatacttt agttcaatta cctttataaa
     5941 caaaagagcc tataatccta gggcactgaa cccttaaaac gggaacttaa taaaaacacc
     6001 atgttctagg ctattaattc tctgtatttt acaggggata agtagcctag tttttgttga
     6061 attcgattat tattattatt attattgttt ttaatgtact tttcgacaat atctattaca
     6121 atgtgattag agtgattaag ctcattattg atgtaaaaag tttcagactt tagcgaggaa
     6181 tggaaacttt ctatcggggc gttatcggca ggtgttccct ttcgggacat acttctgata
     6241 atgccttttt cttcgcacaa ttgataataa gcataagatg tataaacgct gccttgatca
     6301 ctatgtaata tacaaccctc aggtatatcg atttgattta atgtatcatt aactaaactt
     6361 tggtcttgtt tatcatctat tttatacgcc acaatttctc cgttataaat atccattatc
     6421 gaagataaat acaacataga atgaccaaat ggtaaataag taatatcggt tgttaatact
     6481 tccattggac aactcgcttt aaattgtctt tgtaataaat tgtccgtttt ataatacggt
     6541 ttacctattt ttgtcatctt tttaggtcta actcggcagt tcaaatgatg cttctgcatc
     6601 attctctgta ctctcttatg attaattggt gatgtataac attgattaat caatgctgta
     6661 atcttacgat aaccgtaggt atagtggtta gctttacata attcaataac tttttgtgtt
     6721 acggtatcat ttttatgggt tttgtttttc catcggtaat atgttgattt aggtatgttt
     6781 aatactttta gtagcaattt gattgaatat tttactttta attgatccac taaatctatg
     6841 actactgttg gtaccacttc ctttccaata ccttgtactt ttttaaaata tccaattcta
     6901 tatcttttct cttattttct aattttaatt gttctacttc tgacagctct tctaatcctt
     6961 taccgtaggt atattgttta ccaacttgtt gtgaaaatct atatgctagt tttggtaaaa
     7021 ctgaggaagg acgctggata gctaagaatg cccataatta tggatttatt ataagatatc
     7081 ctaaaaacaa agaaagcatc acaggatatc aatatgaacc ttggcattta cgttatttag
     7141 gaaaaagaag gcgacaaaag tgtacaaatc tggtgaaaca ttagagggat ttgtaggctt
     7201 aaaatgatca atttaaaata atcgaaactt caactacctt attatcgacg aagtgtattc
     7261 cagcacttcg tctttatttt taccgcaaac attatacctt actatttaat aaatctattt
     7321 tatatctaca tacttcctct ttctttttct aaaaattttt gagaattctc tttatcaatt
     7381 tcaataacac ttatctaatg aaacagtcat tgtcgtaatt ttttcataac tacacgaggc
     7441 ttatattgaa attgctaaag aacatcccac gatgattttt tatcgggaaa ggaatgggat
     7501 ttgcagatta gaagaagcag aaggattgtg caagcacaat cccaaaatcc cgttattctt
     7561 tataaataaa taatatatat aaggaagcag agaccccacc ctatcatcaa tacttataaa
     7621 taatgagttg attgttcgtc aaaataggcg gaatttcggg atttccttgt cataccaagg
     7681 tttgtagcgg ttttttatat ggaattttct catattgtca acgggatcag taataaatga
     7741 caaatcaaat atatattatc tcaatgatgt atatgaagta catcactatc acactatcta
     7801 gggaggcaat gatatgaaaa caactactca agaactcaaa caatatatga ctcgcttatt
     7861 ccaattatct aacaatgaaa catgggaatg tgaaacactg gaggaagcgg cagaaaatat
     7921 tctacccaaa cgttttatta atgattcccc acttgcacat cttatacttg aaacttatac
     7981 ctactataat aatgagctac atgaactaag tatctatcca tttctaatgt attctaataa
     8041 ccaactcatc agtattggtt atctggatca ttttgatatg gactttctat acctcacaga
     8101 tactaaaaat acgattatcg atgaacgtca tttactaaaa gaaggaggga ataaccatga
     8161 ataattggat caaagtggca caaatatctg ttacagtcat taacgaagtg attgacatca
     8221 tgaaagaaaa gcaaaatgga ggaaaatagt atgaaaatca atcgatacat cacaagaggc
     8281 attagtgaac aactatctct agaccttcaa atcttacttt ggaacatggt aaaagatcga
     8341 gacaatcaac ttaatacaga ttacctacac attttcaaac tacaagaaga tgataatatg
     8401 ttgtcaatta cacatgaaca agaacaaccc gcatacaaat tggaatatca ctatacaaac
     8461 tatataaaaa atcaaaatgc attacctaag aaagtctacg tcatccgaga agatgatgta
     8521 gacgcttttt attatgtgat gcttttgcca gaagaatact aaaggaagtg acgatatatg
     8581 aatacaatca aaagtacgat acacacagaa gcgatattta gcgatgatga acaacatcgc
     8641 tacttactca aaaagatatg ggatgacaag aaaccggctt gtactgtgat aacgatgtat
     8701 cttcatttag atggtgtatt atcactcgat cttactacgg ttctcatcct caatcaatta
     8761 gctaattctg agcaatatgg cgctgtttat ctcgttaatc ttttctctaa tattaaaaca
     8821 ccagagaacc ttaaacatat caaagagcct tatgatgagc acacagatat acacttaatg
     8881 aaagcaatta gtgaaagtga cacagtcatt cttgcttatg gtgcctatgc gaagcgacca
     8941 gttgttatcg accgtgtcga acaagtgatg gaaatgttaa aacctcataa aaagaaagta
     9001 aaaaagctca taaatccagt aacgaacgaa gttatgcatc cactcaaccc taaagcacgt
     9061 caaaaatgga cactaaagta aaggagtatt atctatgaac catgacaaca ctatacaatc
     9121 caattggcga acggttgcta gttgtttagc atcacaaaat tacatttcaa tagtaaaagg
     9181 tctggtgcat catttcacag ccatcgatga cgaggaaata cttgataaaa tctatgaaga
     9241 gtttataaat gatgactcta ttacaacggt acttaacaat gatttacaaa caattattaa
     9301 tcattatcta tcaaaa
//
LOCUS       DAMQWL010000092         9308 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.093, whole genome shotgun sequence.
ACCESSION   DAMQWL010000092 DAMQWL010000000
VERSION     DAMQWL010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9308
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.093"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..3443
                     /locus_tag="PF788_002039"
     CDS             <1..3443
                     /locus_tag="PF788_002039"
                     /EC_number="6.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate carboxylase"
                     /protein_id="HDG6304294.1"
                     /translation="KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKAD
                     ESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFI
                     GPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATS
                     GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHG
                     NIVHLFERDCSVQRRHQKVVEVAPSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFL
                     VSGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITT
                     LGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLV
                     KLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETP
                     ELFNIQPSLDRGTKTLEYIGNVTINGFPNVEKRPKPDYELASIPTVSSSKIASFSGTK
                     QLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKD
                     GFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNV
                     IHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKISEGTICYTGDILNPERS
                     NIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHD
                     TSGNGLLTYKQAIDAGVDIIDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGME
                     SLSHYWSTVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERFDEVKD
                     MYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVSFFKG
                     EIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFEKVRELLEEEQQGPVTEQDII
                     SYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETIS
                     EPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVK
                     VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKATD
                     "
     gene            complement(3583..4494)
                     /locus_tag="PF788_002040"
     CDS             complement(3583..4494)
                     /locus_tag="PF788_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000467197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme A synthase"
                     /protein_id="HDG6304295.1"
                     /translation="MFGKKNLKWLGVVATLMMTFVQLGGALVTKTGSADGCGSSWPLC
                     HGALIPEFFPIDTIIELSHRAVSALSLLMVLWLVITAWKHIGYIKEIKPLSIISVGFL
                     LLQALIGAAAVIWQQNDYVLALHFGISLISFSSVFLITLIIFSIDQKYEADELYIKKP
                     LRRLTWLMAIIIYCGVYTGALVRHADASLAYGGWPLPFHDLVPHSEQDWVQLTHRIMA
                     FIVFTIIMITYIHAVKNYPNNRTVHYGYTAAFILVILQVITGALSIMTNVNLIIALFH
                     ALFITYLFGMTTYFIMLMLRSVRSDKQ"
     gene            4934..5845
                     /locus_tag="PF788_002041"
     CDS             4934..5845
                     /locus_tag="PF788_002041"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HDG6304296.1"
                     /translation="MSKEHTLSQNISRVNFKELQQIIKMGLVQGNLIPAFAGAWLAVV
                     MTNHSFLSSIPQILLMLFGSTLIMGGACALNNYYDQDIDRIMPSKQNRPTVNNRITDQ
                     NLLLLSFGMMLVGEICLFLLNIPSGVLGLMGIVGYVSYYSIWSKRHTTWNTVIGSFPG
                     AVPPLIGWVAIEGQISLTAIALFLVVFCWQPIHFYALAIKRKDEYALANIPMLPSVKG
                     FKRTRVSMFIWLIILLPVPLLLINLGVVFVVLATLLNLGWIALGLTTFKKNSDQTKWA
                     TQMFIYSLNYLVIFFVLAVIVSLLTLI"
     gene            5870..6331
                     /locus_tag="PF788_002042"
     CDS             5870..6331
                     /locus_tag="PF788_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HDG6304297.1"
                     /translation="MGVPILPTISTTCIVISAILIAIGWRLIWKREINKHKNVMLAAA
                     VFALTFFLIYASRTIFIGNTAFGGPASIKKYYTIFLFFHINLATIGGILGLVQIITAF
                     KDKYNVHRKFGPFASVIWFCTAITGVAVYLLLYVLYPGGETTSLIKATFGH"
     gene            6658..7695
                     /locus_tag="PF788_002043"
     CDS             6658..7695
                     /locus_tag="PF788_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499615.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HDG6304298.1"
                     /translation="MKKLIIRVVGVLFLVGFLIYLFYSPRLKFDVLENPNKGNKVNRS
                     EQVNKSNNHAENPKPKEGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSY
                     YIVSTKREEIVSVYATGEKVNVSPLKIGQHSAEIFNHTSINPEPSFKVDGKKYEFELS
                     DEDLKTQTLIKYGDIYAQVYSDQQSKKVLSVRFLTKEMLADIEPYQLNSNSTSEEHNK
                     RPVEQNPNQLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTE
                     DALRGQLDKNHVTYKTTAQNVGYAFNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVM
                     RDYYSLIFLEK"
     gene            7711..8145
                     /locus_tag="PF788_002044"
     CDS             7711..8145
                     /locus_tag="PF788_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF family regulator"
                     /protein_id="HDG6304299.1"
                     /translation="MINEASLAILDDIDELADMIVASDIYASFEQAKQALENNDEAHL
                     LYQSFLKSKEKYDEVMRFGKYHPDYKKVMLETRQRKRAYEMLDVVMHYKAREMALQHL
                     IDEVVTKIAYAVSEHVKIETGNPFFQTSHSGCATGGSCNCSL"
     gene            complement(8208..9134)
                     /locus_tag="PF788_002045"
     CDS             complement(8208..9134)
                     /locus_tag="PF788_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDG6304300.1"
                     /translation="MKKVNRNILNAVLVGAGFLSSLLMINKNKVITKKQTIPAFFKGN
                     APYIFAHRGGMALRPEQTQLAFDYAKQLGVDGFETDVRLTKDQQLIVFHDATVDRTTN
                     GSGKVSAHTLAELKKLDAAYHFKDINGLTPYRGHAHTAILTFDELLKQYPDMYINVDL
                     KDAPESYEGSIAPQIMFDTIAENQAFDRVLVTSFYKEQIVRFNKIAQGSVAIGASQQE
                     VTEAFLKYHLLGGRYYQPLAQTFQMPTHFKGIDLTSSRFIKWLNDMNIIPGYYGVNSI
                     NLMNDLYQKGAHTIVTDRPDLAQQFKQTIPNK"
BASE COUNT         3232 a         1385 c         1708 g         2983 t
ORIGIN      
        1 taaaaaagtt acttgttgct aaccgtggag aaattgcaat tcgtatattc agagcggcgg
       61 cagaattaga catcagcaca gttgcaattt attcgaatga agacaaaagt tcattacata
      121 gatataaagc agatgaatcc tatttagttg gaagtgattt aggtcctgct gaaagttatt
      181 taaatattga gcgtatcatt gatgtagcaa aacaagcgaa tgtggatgcg attcatcctg
      241 gctatggatt tttaagtgaa aatgaacaat ttgcgcgtcg ttgtgcagaa gaaggaatta
      301 aatttattgg tcctcattta gaacatttag atatgtttgg agataaagtt aaagctcgta
      361 caacggctat caaggcagat ttaccagtta ttcctggtac agacggtcca attaaatcat
      421 atgaattagc aaaagaattt gcagaagaag ctggtttccc gctaatgatt aaagccacaa
      481 gtggtggcgg cggtaaaggt atgagaatcg ttcgtgaaga aagtgaatta gaagatgctt
      541 tccatagagc aaaatcagaa gctgaaaaat catttggtaa tagtgaagtt tacatagaaa
      601 gatacattga taatccaaag catattgaag tacaagtcat aggtgacgaa catggaaata
      661 tcgtacactt atttgaacgt gattgttcag tacaacgtcg tcatcaaaaa gttgtagaag
      721 ttgcaccatc agttggatta tcatcaacat tacgtcaacg tatttgtgat gctgcaattc
      781 aattgatgga aaatattaaa tatgtcaatg caggtactgt tgaatttcta gtatctggtg
      841 acgaattctt ctttatagaa gttaaccctc gtgtacaagt agagcataca attacagaga
      901 tggtaacagg aattgatatt gttaagacac aaattttagt tgcagcaggt gccgatttat
      961 ttggtgaaga gattaatatg ccgcaacaaa aagatattac aacattaggc tatgccatcc
     1021 aatgtcgtat tacaacagaa gatccgttaa atgatttcat gccggatact ggaacaatca
     1081 ttgcttatcg ttcaagcggg ggctttggtg tacgtcttga tgctggagat ggtttccaag
     1141 gtgctgagat atcaccttat tatgattcat tactcgtaaa attatctaca cacgcgatat
     1201 catttaaaca agcagaagaa aaaatggtac gctcattacg agaaatgcgt attcgtggtg
     1261 ttaaaactaa tattccattc ttaattaatg taatgaagaa taaaaagttc acaagtggtg
     1321 attacacaac taaatttatt gaagaaacac cagaactttt caacattcag ccgtctctag
     1381 atagaggtac taaaacatta gaatatatag gtaatgtaac aattaatggt ttcccaaatg
     1441 ttgagaaacg tccgaaacca gactatgaat tagcatcaat tccaactgta tcttcaagta
     1501 aaatcgcttc atttagtggt acgaaacaat tgcttgatga agtaggtcca aaaggtgtag
     1561 ctgaatgggt taaaaagcag gatgatgtct tactaacaga tacaaccttt agagatgcac
     1621 accaatcatt attagctaca cgagttagaa ctaaggatat gattaatatc gcatccaaaa
     1681 cagcggacgt atttaaagat ggtttctcac tagaaatgtg gggcggtgct acatttgatg
     1741 tggcatataa tttcttgaag gaaaacccat gggaacgact tgaacgtcta cgtaaagcta
     1801 ttccaaatgt attattccaa atgttgttac gtgcttcaaa cgcagttggt tataaaaact
     1861 atcctgataa tgttattcat aaattcgtac aagaaagtgc taaagcaggc atagatgtct
     1921 ttagaatttt cgattcatta aactgggtag atcaaatgaa agttgccaat gaagcagtac
     1981 aagaagcggg caaaatctca gaaggtacta tttgttatac aggtgacatt ttaaatcctg
     2041 agcgatcaaa catttatact ttagagtatt atgtcaaact agctaaagag ttagaacgtg
     2101 aaggtttcca tattttagcg attaaagata tggcaggctt attaaaacct aaagccgctt
     2161 acgaattgat tggtgagtta aaatcagctg tagatttacc aattcatctt cacactcatg
     2221 atacaagtgg taatggttta ttaacataca aacaagcaat agatgctggt gtcgatatca
     2281 ttgatactgc tgttgcttca atgagtggtt taacaagtca gccaagcgcc aattcgttat
     2341 attatgcatt aaatggcttc ccacgccacc ttagaactga tattgaaggt atggagtcac
     2401 ttagtcatta ttggtcaact gtacgtactt attattcaga ctttgaaagt gatatcaaat
     2461 caccgaatac tgaaatttat caacatgaaa tgcctggtgg acagtattcg aatttaagtc
     2521 aacaagctaa aagtttaggt ttaggcgaaa gatttgatga agtcaaagat atgtatcgca
     2581 gagtgaattt cttatttggt gatatcgtaa aagtaacacc atcgtctaaa gtagttggtg
     2641 atatggcact ttatatggta caaaatgatc ttgatgaaca atccgtgatt acagatggct
     2701 ataaattaga tttcccagaa tcagtagtgt cgttcttcaa aggtgaaata ggacaacctg
     2761 taaatggttt taataaagat ttacaagcgg ttattttaaa aggccaagaa gcactaacag
     2821 ctcgtccagg tgaatatcta gagccagttg attttgaaaa agtccgtgag ttgcttgaag
     2881 aagagcaaca aggtcctgtt acggagcaag atattattag ttatgtacta tatccaaaag
     2941 tatatgaaca atatattcaa actagaaatc aatacggaaa cttatcgtta cttgatacgc
     3001 ctacattctt ctttggaatg cgtaatggtg aaacagtaga aatcgaaatc gataaaggta
     3061 aacgattaat tattaaacta gaaacgatta gtgaaccaga tgaaaatggt aatagaacga
     3121 tttactatgc gatgaatggt caagcgagac gtatttacat taaagatgaa aatgtgcata
     3181 caaatgcgaa cgttaagcca aaagcagata agagtaatcc aagtcatatc ggtgctcaaa
     3241 tgccaggttc agtaactgaa gtcaaggtta gtgtaggtga aactgtgaaa gctaatcagc
     3301 cgttgctaat tactgaagct atgaaaatgg aaacaacaat tcaagcacca tttgacggtg
     3361 tgattaaaca agtaactgta aataatggtg acacaatagc gacaggcgat ttattaatcg
     3421 aaattgaaaa agcaactgac taaaatgatt aaaataaaac gagattacac aacaattgac
     3481 gtgtaatctc gtttttacat ggcttaggtt taattttaaa tattgatata aaaaaccgta
     3541 attttaatgg gcgtgccatt aaaattacgg tttgcttttt tgttattgct tgtcacttct
     3601 tactgatcgt aacattagca tgataaagta tgttgtcata ccaaataaat aagtgataaa
     3661 taatgcatgg aaaagtgcga ttatcaggtt aacatttgtc ataatagata atgcacctgt
     3721 gataacttgt aatataacaa gtataaatgc agctgtataa ccataatgaa cagtacggtt
     3781 atttggataa tttttaacag cgtgaatata agtaatcata ataatcgtaa acactataaa
     3841 agccatgata cgatgcgtga gttgaaccca atcttgttct gaatgtggta caagatcgtg
     3901 gaatggcaat ggccaaccac catatgctaa acttgcatcc gcatgtctca ctagtgcacc
     3961 agtataaaca ccacaataaa tgatgattgc cattaaccat gttaaacgtc ttaatggctt
     4021 tttgatatat aattcgtcag cttcatattt ttgatctata gagaaaataa tcaatgttat
     4081 taaaaataca gatgagaaac tgattaatga tataccaaag tgcaatgcta aaacgtaatc
     4141 gttttgttgc caaataacag cagcagctcc gattaatgct tgcaataata agaatccaac
     4201 actaatgatt gataaaggtt taatttcttt aatatagcct atatgtttcc atgcagtgat
     4261 aactaaccat aagaccatta ataaagacaa agctgaaacg gctctatgac ttaactcaat
     4321 aatcgtatca ataggaaaga attctggaat caacgcacca tgacatagtg gccaagaaga
     4381 accacaacca tcagctgatc cggttttggt aactaaggct ccaccaagtt gtacaaatgt
     4441 catcattaac gttgctacga cacctaacca ttttaaattc tttttgccaa acaatttata
     4501 caccccatca taaaaaaacg catcactgag aattagaatt aatagccgga tttgagatga
     4561 tactataaat agacctgatt gtaggatatg aaaagatggg atccaacgca ggaaatatga
     4621 tttaatttta caagtattgt atgtggacga cataaaaaga acttaatcgt aatgattttt
     4681 ttattgggat aattatgtaa tccacgttta ctcaaatttg aagcttaaat attaatctct
     4741 tttagatgca tgattctact tattaaaatt ttctaacata tacattatag caataaatta
     4801 aatgttattt gtgtcacaaa attgacattt tctcttgtcg ttaatttgtc acaatttaat
     4861 tttattaaac ctagtctttt tatgcaatct aagatatcat aatcttatat gaacaaattt
     4921 aaggaggggg attatgagca aagagcatac tttgtcacaa aatattagca gagttaactt
     4981 caaagaattg caacagataa ttaaaatggg acttgttcaa ggtaacttaa ttccggcttt
     5041 tgcgggcgca tggctagcag ttgtaatgac aaatcattcc ttcttatcat caatacctca
     5101 aattttatta atgctatttg gatctacttt aattatgggt ggcgcatgtg cgttaaataa
     5161 ttattacgac caagatattg atcgtattat gcctagtaaa caaaatagac caactgtaaa
     5221 taatagaatt acagatcaaa atttattact attaagtttt ggtatgatgt tagttggaga
     5281 aatttgtttg tttttattga atataccatc aggcgtactt ggtcttatgg ggattgtagg
     5341 ttatgtgtct tattactcaa tatggtctaa aagacataca acatggaaca cagtgattgg
     5401 gagttttcct ggagcagtac caccactaat tggatgggtt gcaattgaag gacaaattag
     5461 tttaacagcg attgcgctgt ttttagttgt attttgttgg caaccaattc atttttatgc
     5521 cttagctatt aaacgtaaag atgaatatgc acttgcaaat attccaatgt taccatcagt
     5581 taagggcttt aaacgtacac gtgtcagtat gtttatctgg ttgattattt tattgccagt
     5641 acctttatta ctaataaatt taggtgtcgt attcgtagtg ttagctacat tattaaattt
     5701 aggatggatt gcattaggtt taacaacatt taagaaaaat tcagatcaaa caaaatgggc
     5761 aacacaaatg tttatatatt cactaaatta tttagtgatc tttttcgtgt tagctgtgat
     5821 tgtttcatta cttactttga tctagattaa ttaagttagg atgaaaaata tgggcgttcc
     5881 aattttacca acgattagta cgacatgtat tgtcattagt gcaattttaa ttgccattgg
     5941 ttggagactt atttggaaaa gggaaataaa taaacacaaa aatgttatgt tagctgcagc
     6001 tgtttttgct ttaacttttt tcttaatcta tgcaagtaga acgattttta tcggtaatac
     6061 agcatttggc ggaccagcat caattaagaa atattatacg attttcttat ttttccacat
     6121 taatttagca acaattggtg gtattctagg cctagttcaa attattactg catttaaaga
     6181 taaatataat gtacaccgca aattcgggcc attcgcttca gttatatggt tctgtactgc
     6241 aattacaggt gtagcagttt acttattatt atatgtatta tatccaggtg gagaaacgac
     6301 atcactgatt aaagcaacat ttggtcatta atatgcttat acaaatgata ctaatctgat
     6361 aaggcaattt gttttatcag gttttttgat gaagaatagt cggacagttg atggtattca
     6421 tttgatacct taactgtcca tttttttata catattttaa tcttaataat gaaattcaac
     6481 ctgaaaacat aaagataggt tatgatatag agtgtaggga aaatctttat gacgttaaaa
     6541 ttatgcctga agatgatttt gttttatcga aacgacacag ttatgtcagt gttgaaaatt
     6601 tgctaattaa tgtgttgttt tttacaatag tattaatact ttttaggtgg ttgattgatg
     6661 aaaaagttaa ttataagagt cgtcggtgta ttatttttag ttggattttt aatatatctt
     6721 ttttattcac cgagattaaa atttgatgta ttagagaacc cgaataaagg taataaagta
     6781 aatagatctg aacaggtgaa taaatcaaat aaccatgctg aaaatccaaa gcctaaagaa
     6841 ggtgttggta catgggtagg taaagatatt aaagtgctta cttctaaatt tggacaagca
     6901 gatcgtgtct acccttttag agatggttac aaaaattatg tgtttaaaga caaaaacagt
     6961 tattacattg tttcaactaa acgtgaagaa atcgtttcag tgtatgctac aggtgagaaa
     7021 gtcaatgtta gtccgttaaa aataggacaa cattctgcag aaatttttaa tcatacaagt
     7081 attaatccag aaccgtcctt taaagttgat ggtaaaaaat atgaatttga actttcagat
     7141 gaagatttaa aaacacaaac actgattaaa tatggcgaca tatatgcaca agtgtattct
     7201 gatcaacaat cgaaaaaggt gctaagtgta cgatttttaa caaaagaaat gttagcagat
     7261 attgaacctt atcaattaaa ttctaattct acgtcagaag agcataataa gcgtccagtt
     7321 gagcaaaatc caaatcaatt aatttctctt tatgaagtaa cgaatgaaat gagaaaatta
     7381 aaaggattaa aaccattgaa aatcaatagc gatttagcac atattgcatc taataactta
     7441 tatgaagcga cctctaatgg ttctgatagt gttgaattta cagaggacgc attaagaggg
     7501 caattagata aaaatcacgt tacttataaa acaactgctc aaaatgttgg ttatgcgttt
     7561 aatgatgtac caacattaat ccatagttgg atgaattcag atatacatcg atctcgtcta
     7621 ttaaattcaa aatacgatga gatgggtgga gatgtaatga gagattatta ttcactaatt
     7681 ttcttagaaa aataacaatg aggggtattt atgattaatg aagcttcact agcgatatta
     7741 gatgatattg atgaactagc tgatatgata gttgcatcag atatttatgc atcatttgag
     7801 caagctaaac aggcgctcga aaacaatgac gaagcacatt tactttatca atcattttta
     7861 aaatcaaaag agaaatatga tgaagtaatg cgattcggga aatatcatcc tgattataag
     7921 aaagttatgt tagagacaag acaacgcaaa agagcatatg agatgcttga cgttgtgatg
     7981 cattacaaag ctagggaaat ggcacttcaa catttaatag atgaagttgt tacgaaaatt
     8041 gcgtacgctg tttcagaaca tgtcaaaata gaaacaggta atccattctt tcaaacatca
     8101 catagtggtt gtgcgacggg cggatcctgt aattgttcat tataaaaaac atcgagtcag
     8161 aaaaaggtgg ttattgaaac cactaactag catctgactc gatgttttta tttattcggg
     8221 attgtttgtt tgaattgttg tgctaaatct ggtcgatctg tcacaatcgt gtgtgcacct
     8281 ttttggtata aatcattcat cagatttata ctatttacgc cataatagcc tggaatgata
     8341 ttcatatcat ttaaccattt gataaaacga gatgaagtca aatcaatgcc tttaaaatga
     8401 gtaggcattt ggaacgtttg tgctaatggt tggtagtacc taccacctaa taaatgatat
     8461 tttaaaaatg cttctgtaac ttcctgttgg ctagcaccaa ttgcgacgga tccttgtgca
     8521 attttattaa aacgaacgat ttgttcttta taaaaacttg tcacaagaac gcggtcaaat
     8581 gcttgatttt ctgcaattgt atcaaacata atttgtggtg cgattgagcc ttcataggat
     8641 tcaggagcat cttttaagtc tacgtttata tacatatcag gatattgctt cagcaactca
     8701 tcgaaggtta gtatagctgt gtgtgcatga ccacgatatg gtgttagtcc attgatatct
     8761 ttgaagtgat aagctgcgtc taatttcttt aattctgcta atgtatgggc actaactttt
     8821 ccagagccgt tcgtcgttct atcaacagtt gcgtcatgaa aaacgataag ctgttgatct
     8881 tttgtgagtc tcacatctgt ttcaaagcca tcaacgccta attgtttagc atagtcaaat
     8941 gcaagttgcg tttgctctgg tcttaaagcc ataccaccgc gatgcgcaaa tatatatggt
     9001 gcattgcctt tgaaaaaagc agggatggtt tgctttttag taatcacttt atttttattg
     9061 atcattaata gactacttaa aaatccagca ccgactagta ccgcatttaa aatgtttctg
     9121 tttacttttt tcataaaaaa ttcctcctcg tttactttta tagcttaaca aattcatagt
     9181 tctgactaca gcgaaatgtg tggttaatca tatagtgatg ctcttgagaa ttgaattaat
     9241 ataatgatgt ttaatataat ctaaatacat ttatcgagca attacataag acataattaa
     9301 ggtagctt
//
LOCUS       DAMQWL010000093         9222 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.094, whole genome shotgun sequence.
ACCESSION   DAMQWL010000093 DAMQWL010000000
VERSION     DAMQWL010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9222
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.094"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..825)
                     /locus_tag="PF788_002046"
     CDS             complement(<1..825)
                     /locus_tag="PF788_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000613248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP synthase"
                     /protein_id="HDG6304301.1"
                     /translation="MIPTLEEIIDKYGNLVDYLKFDVTVEVYEDLLLLRSLSDLNEHQ
                     KMDRVSFIKKHLNSNFDYLLDDTEFRSINKIYSNLNIMTHINSQNNNFKRNPFINEEQ
                     LKSLLAIKKVDAHMSYDSNITSKALAEINKTQKRLVTKIDTLYNQSKKENEYVRLGEK
                     ISYTKLENHWKYLYNEIQFYNLNNQLISYVALEQEYAWAFLNELFYLIELYLKAFKGQ
                     KKTDYEFGKKLNEFIQSYVIILLIDIRLPVVRLYIIRDIVDTCEGEKDNYKRITLIE"
     gene            964..1254
                     /locus_tag="PF788_002047"
     CDS             964..1254
                     /locus_tag="PF788_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001036438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304302.1"
                     /translation="MNKKSKQQEKLYNFIIAKSFQQPVGSTFTYGELRKKYNVVCSTN
                     DQREVGRRFAYWIKYTPGLPFKIVGTKNGSLLYQKIGINPCNNSTPSKGGDC"
     gene            1254..3041
                     /locus_tag="PF788_002048"
     CDS             1254..3041
                     /locus_tag="PF788_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001573627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF927 domain-containing protein"
                     /protein_id="HDG6304303.1"
                     /translation="MSYTLFEIGPFALDSFGWKETIPPKKDGDSEKVVRMASPIIVNA
                     RFSDPITGVEKLIITNNNGKKDIFESDILTTRNLPSLIKYGYSINEKYIRSLSYALQL
                     MRDRLPLSELYEGVGILETPFGYLISLDKVLKSIQFNQSSPSYPIVDSAYDLTPKGTF
                     DNWFNMYIDEVKGHLLLELAVIFGISALVTSFLKHKHEIEFAGILFSFTGQSSTGKST
                     AAALAVSVAGNPTKGNETLFRSWNATRNALEGYLSNNYGIPIVFDELSSTTLRDTTGL
                     LYSIAEGQGRQRSNVHGEVKTPKNWGTSVISTSEYSIFNDSAQNDGLRVRTIEINEQF
                     TTNATNADNIKKAVALNYGHVLPLVAKYLINREDEVIQWFYKEVDWFEAKLKDETNNT
                     GIRMFKRYAVITTSAKILGRVLSTDIDIANIRDYFIDYHTHTVSERSLADKAIDVIIQ
                     FVAQNRGKFSDEGALKNMFENYGLISLKDDHIEVKIIANVFKQMLNNHQFQDVNNVVN
                     ALRDKGFILADRGRQTTKRSVKDNSGKKQSLVFYHLKLDVEFASILGLTKDKSLLQNW
                     TPSNDNKAAKELFKSANEGIGPSGVHEDF"
     gene            3275..4624
                     /locus_tag="PF788_002049"
     CDS             3275..4624
                     /locus_tag="PF788_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000815654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDG6304304.1"
                     /translation="MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQ
                     SGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVH
                     DGYFDMDQAFDRLKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH
                     NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYC
                     GRVNNQYGQFDNMFPSIVSTSIYEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLT
                     NMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKI
                     KSAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSING
                     HQIQHIIQNIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA"
     gene            4646..6274
                     /locus_tag="PF788_002050"
     CDS             4646..6274
                     /locus_tag="PF788_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001186610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDG6304305.1"
                     /translation="MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFE
                     VKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLH
                     KQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
                     LPLGYDKIPDSKHELMINQHEANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPF
                     SISSITYILANPFYIGKIQFAKYKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQ
                     MRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNF
                     RNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDI
                     AYKQQQYDEVQIKINNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNE
                     DKTLFDAKEISKLLQHIFHDIKHIEKSRLKALYLSVIDRIDIKKDGNHKKQFYVTLKL
                     NNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI"
     gene            6796..7146
                     /locus_tag="PF788_002051"
     CDS             6796..7146
                     /locus_tag="PF788_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002502216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304306.1"
                     /translation="MKTITQELKQYITHLFQLSNNEAWECEALEEAAENILPERFIND
                     SPLVHLTLETYTYYNDELHELSIYPFLMYANNQLISVGYLDHFDMDFLYLTDTQNIII
                     DERHLLKQGGQDHE"
     gene            7233..7544
                     /locus_tag="PF788_002052"
     CDS             7233..7544
                     /locus_tag="PF788_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002505017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF960 domain-containing protein"
                     /protein_id="HDG6304307.1"
                     /translation="MKINRYITRGINESIPLDLQILLWHMVEKKDNQPHTDYLHIFKL
                     QEDENILSITHEQEQPTYKLEYHYTNYEKNQNALPKKVYVIREDDVDAFYYVMLLPEE
                     Y"
     gene            7559..8065
                     /locus_tag="PF788_002053"
     CDS             7559..8065
                     /locus_tag="PF788_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001092170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1643 domain-containing protein"
                     /protein_id="HDG6304308.1"
                     /translation="MNTIKSTIHTEAIFSDDEQHRYLLKKTWDEKKAACTVITMYPHL
                     DGVLSLDLTTVLILNQLANSERYGAVYLVNLFSNIRTPENLKHIKNPYDEHTDIHLMK
                     AISESDTVILAYGAYAKRPVVIDRVEQVMEMLKPHKKKVKKLINPVTNEIMHPLNPKA
                     RQKWILKS"
     gene            8117..9222
                     /locus_tag="PF788_002054"
                     /pseudo
     CDS             8117..9222
                     /locus_tag="PF788_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002494449.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
BASE COUNT         3462 a         1585 c         1442 g         2733 t
ORIGIN      
        1 ttctatcagt gtaattcttt tgtaattatc tttttctcct tcacatgtat ctacaatgtc
       61 tctaataata tataatctaa caacaggtaa tcgtatatct ataagtaaaa taatgacata
      121 tgattgaata aattcgttta attttttccc aaactcataa tctgttttct tttgtccttt
      181 aaatgccttc aaatacaatt ctatcaaata aaatagttca tttaaaaaag cccaagcata
      241 ttcctgttct aatgcaacat aactaatcaa ttgattatta agattataaa actgaatctc
      301 attatataaa tatttccaat gattctccaa ttttgtatac gatatttttt ctcctaaccg
      361 tacatattca ttttcttttt ttgactgatt atagagtgtg tctatctttg taactaatct
      421 tttttgcgtt ttgtttattt ctgccaatgc ttttgaagta atatttgaat cataactcat
      481 atgtgcatct actttcttta tcgcgagtag tgatttcaat tgttcttcat ttataaatgg
      541 attacgttta aaattattat tttgactatt gatatgcgtc atgatattta aattactgta
      601 aatcttattg atacttctaa actcagtatc atctaataaa taatcgaaat ttgagtttaa
      661 atgttttttt ataaatgaaa ctctatccat cttttgatgt tcatttaaat cgcttaaact
      721 tcttaataac aacaaatctt cataaacctc aactgttaca tcaaatttca aataatcaac
      781 taagtttcca tacttatcaa taatttcttc tagcgtaggt atcaatatat accccccctc
      841 cccatttttt gttccgcgtc taatcataat gcttcattta tgcttattat agcaatcaat
      901 tgaagatagt ttaacctata tgatattgat tgactcctta aaaattattg gaggaatttt
      961 aaaatgaata agaaatctaa gcagcaagaa aagctttata attttataat tgctaaatct
     1021 tttcaacaac cagttggaag tacgttcact tatggtgaat taagaaagaa atataatgtg
     1081 gtttgtagca cgaatgatca acgtgaagta ggacgtcgtt ttgcttactg gattaagtac
     1141 acgccaggat taccatttaa aattgtagga acaaaaaatg gcagtttatt atatcagaaa
     1201 atagggataa acccatgcaa taatagcacg ccttcgaaag gaggtgattg ctaatgagtt
     1261 acacattgtt tgaaattggc ccatttgctt tagattcctt cggttggaaa gaaacgatac
     1321 cacctaaaaa agatggtgac agtgaaaaag tggttagaat ggctagccct attattgtta
     1381 atgcaagatt ttctgatcca attactggtg ttgaaaagtt gattattact aacaacaatg
     1441 gtaaaaaaga catttttgag tctgatatct taacaacacg aaacttacct tctttaatta
     1501 aatatggcta cagtattaac gagaagtata ttagatcatt gagttatgcc ttgcaattga
     1561 tgcgagatag attaccactt tctgaattat atgagggtgt aggtatacta gagacacctt
     1621 ttggctactt gatatcgcta gataaagttc tcaaatctat tcaatttaat cagtcctcac
     1681 cttcataccc tattgtagat agtgcttatg acttaactcc taaaggtaca tttgataatt
     1741 ggtttaacat gtatattgac gaggttaaag gtcatcttct tttagaattg gcagtcatat
     1801 ttgggatttc tgccttagtg acaagttttc tgaagcataa acatgaaatc gaatttgcag
     1861 gaattctctt tagttttaca ggtcaatcct caaccggtaa gtcaaccgca gctgctttag
     1921 ctgtatcagt cgctggtaac cctaccaaag gtaatgaaac tctttttaga agttggaatg
     1981 ccacacgaaa cgcacttgaa ggttatttga gtaacaatta tggcattcct atagtatttg
     2041 atgagctttc atctacgaca cttagagata ccacgggttt gttatattcc atcgctgaag
     2101 gtcaaggtcg tcaacgttca aacgttcatg gagaagttaa aacgcctaag aattggggta
     2161 cttctgtcat ttcaacgtca gaatacagta tttttaatga ttcagctcaa aacgatggat
     2221 tacgtgtaag aaccatcgag attaatgaac aattcactac aaatgcgacc aatgctgaca
     2281 atattaaaaa agctgtagca ctaaactatg gtcatgtttt accgttagta gctaaatatc
     2341 ttataaatcg tgaagatgaa gttattcaat ggttttacaa ggaagtagat tggtttgaag
     2401 ctaaattgaa agatgaaaca aacaatacag gtattcgtat gtttaagcgt tatgcagtca
     2461 ttacaacatc tgcgaaaata ttaggtcgtg ttttatctac agatattgat atcgctaata
     2521 taagagacta ctttattgat tatcatactc atacagtctc tgaacgctca ttagctgata
     2581 aagctattga tgtcatcatt caatttgtgg cacaaaacag aggtaagttt tcagatgaag
     2641 gtgctttgaa aaatatgttt gagaactatg gattaatctc attaaaagat gaccatatcg
     2701 aagtaaaaat aattgcgaac gtttttaaac agatgctaaa caatcatcaa tttcaagatg
     2761 ttaataatgt tgtcaacgcc ttaagagata aaggtttcat attagctgac cgtggacgcc
     2821 aaacaactaa aagaagtgtc aaagataata gcggtaaaaa acaatcactt gtattttacc
     2881 atctaaaatt agatgtagag tttgcatcta tcctcggatt aactaaagat aagtcgttac
     2941 ttcaaaattg gacaccgtca aatgataaca aagctgcgaa agaacttttt aaatccgcta
     3001 atgaagggat aggcccttca ggagttcacg aagatttcta attgtcttta tcatacaact
     3061 gtgaagcatc aaactgaata atcgacgtat tgaagataga acaaataacg gagtgaaaaa
     3121 catggatgaa cttatcgaga tattagccga tttggtaatt gaagaaatca atcaaacaaa
     3181 tgactaatat ggacgcccaa catctcattg atgttgggct tatatatcaa ttcatccata
     3241 aatatatatt atcactgtga aaggaggagc cgatatgaaa caagtcatag gctatttacg
     3301 tcaaagtacg atgaaacaac aatctcttgc agcacagaaa caagctatcg aagcaatagc
     3361 cgaaaaacat catattcaac atatcaactt ttatagcgac aaacaatcag gtcgcaaaga
     3421 taatcgtagt gggtatcgac aaataacaca attaattcaa caaggacagt gtgacatatt
     3481 atgctgttat cgtcttaata ggttgcatcg taatctgaaa aatgcattaa aactcatcaa
     3541 attatgtcaa acgtaccatg ttcatatctt aagcgtacat gatggttact ttgatatgga
     3601 tcaagctttc gaccgactca agcttaatat cttcatcagt ttagccgaac ttgaatcgga
     3661 taacattgga gaacaagtca gaaatgggct tcaagaaaaa gcaaagcaag gtcgattgat
     3721 tacaacacat gcaccttttg gttacgaata tcacaacgga acattcatca tcaatcaaaa
     3781 tgagtcacca acggtaaagg ctgtattcaa ttattacatt aaaggtcatg gttataagaa
     3841 aattgcacag ttattagaag aagataacac gtatatcaat cgacaaccct atcaagttcg
     3901 taacattatc atcaatccta attattgtgg tcgtgtcaac aatcaatatg gccaattcga
     3961 caatatgttt ccttctattg tttccacaag tatatatgag caagcgcaga gacttcgatt
     4021 gcaaaaacaa accaaacaga caccttcgga taatcaactc aaacaaaaaa tcaaatgccc
     4081 atgttgtaat gcaacactta caaatatgac cattagaaaa aagaatcata cattacgtta
     4141 ctacgtctgt cctaaaaaca tgaatgcttc acgctttgtc tgtgatttta aaggcatcaa
     4201 tgcacaaaca cttgaagata aagtattaga agtgtgccga gacttttatc aaaatcaacg
     4261 catctacaca aaaattaaaa gtgcgattga caaacgcatc aaaagacaaa gaaacataga
     4321 aaaacatcac acattgactc aagaacaact gatagaaaag ttggcacaag gcatcattga
     4381 tgcagaaacg ttcagagagc aaacacaatc attacgtcaa caaccgcaac gcactacatc
     4441 tatcaatggg catcaaatac aacacatcat tcaaaatatt attcaaaaac gtttcacgtt
     4501 aaacatattg tacccctata ttgaaaccat tcacattacg aaagataaaa atcttatagg
     4561 aatctatttc aaaaatgaac cactcaatat tgtcaatcaa accatgcaat catcgattgc
     4621 ataaatgaag aaaggatgta acataatgca acaacttaaa acaaaacgtg tcggtatcta
     4681 tgtacgtgta tcaacagaaa tgcaaagcac agaaggttat agtatcgacg gacaaatcaa
     4741 tcaaatcaaa gaatactgtg acttccatca ttttgaagtt aaagatatat acgctgaccg
     4801 tggtatttca ggtaaatcta tgaacagacc tgagctccaa cgtatgttga aagatgcaaa
     4861 agaaggcaat atcgactgtg ttatggtata caaaacaaac cgattagctc gtaatacatc
     4921 tgatcttctc aaaattgtcg aagatttaca caaacaaaat gtcgaatttt tcagtttgtc
     4981 agagcgtatg gaagtcaata cttcttctgg taaactcatg ttacagatac ttgcgagttt
     5041 ctcagaattc gaacgtaata acattgtcga gaacgtattt atgggtcaaa cgagacgtgc
     5101 ccaagaaggc tattatcaag gcaatttacc actaggttat gacaaaatac cagatagtaa
     5161 acacgagcta atgattaacc aacatgaagc taatattgta aaatatatat tcgagtgcta
     5221 tgccaaagga catggctatc gtaaaattgc caatgcattg aatcacaaag gatatgtcac
     5281 taaaaagggg aaacctttca gtattagttc aatcacatac atcttagcta accctttcta
     5341 tatcggcaaa attcaatttg cgaaatacaa agattggagt gaaaaacgtc gtaaagggct
     5401 gaatgataaa ccagtgatag ctgaaggtaa gcattccccc attattaatc aagatttatg
     5461 ggataaagta caaatgcgta agaaacaagt cagtcaaaaa ccccaagtcc atggcaaagg
     5521 aacgaatctg cttacaggca ttattcactg tccccaatgt ggcgcaccta tggcagcaag
     5581 caataccacg aatactctta aagacgggac taagaaacgt attcgttact attcatgtag
     5641 taattttcgg aacaagggtt ccaaagtatg ttcggcaaac agtgtaagag ctgatgtgat
     5701 tgaagattat gtgatgaagc aaatacttga aatagtcaaa agtgataaag tcattcaacg
     5761 cgtagtaaca cacgtcaatc aagaaaatca agttgatggc gctgcacttc atcacgatat
     5821 tgcttataag caacaacaat atgatgaagt acaaatcaaa ataaataact tgattaaaac
     5881 catcgaggat aatccggact taacatcagt aatcagacca agtattcaaa aatatgaaaa
     5941 gcaactcaat gacattacga atcaaatcaa ccaactcaaa aatcaacaaa atgaagataa
     6001 gactttattt gatgccaaag aaatcagtaa actattacaa cacatctttc atgatattaa
     6061 gcacatagaa aaatctcgac tcaaagcatt gtatctatca gtgattgatc gcattgatat
     6121 taaaaaagat ggtaatcata aaaaacaatt ctatgtcaca ctcaaactta ataacgaaat
     6181 cattaaacaa cttttcaata ataaacaact cgacgaagtg catctcagca cttcgtcttt
     6241 atttttgccc caaacactat atcttactat ttagctaata gaatcattgt tataacaata
     6301 attttcacta tattctttcg cttattttat ctaactattt tcaagaattg ctctttatca
     6361 atttcaataa cacttatcta atgaaacagt tattgtcgta attttttcat aactatacaa
     6421 tgcttatatt gaaattgcta aagaacatcc cacaatgatt ttttatcggg aaatgattgg
     6481 gatttgcaga ttcgaagaaa cagaaggatt gtgcaagcac aatcccaaaa tcccgttact
     6541 ttttataaat aaataatata tataaggaag cagagacaca accctatcat caatacttat
     6601 aaataatgag ttgattgttt gtcaaaatag gcggaatttc aggatttcct tggcatacca
     6661 acgtttgtag cgggttttta tatggaattt tctcttattc ccaccgggat tcgtaataaa
     6721 tgacaaatca aatatatatt atctcaatga tgtatatgaa ctacatcact attacactat
     6781 ctaggaggca ataatatgaa aaccatcact caagaactca aacaatatat aacccaccta
     6841 ttccaactat ctaataacga agcttgggaa tgtgaagcgc tggaggaagc agcagaaaat
     6901 attctaccgg aacgttttat taatgattct ccactggtac atctcacact cgagacttat
     6961 acctactata atgatgaact acatgagcta agtatctatc catttctaat gtatgccaat
     7021 aaccaactca tcagtgtcgg atacttagac cattttgaca tggactttct gtaccttaca
     7081 gatactcaaa atatcattat tgatgaacgt catttactaa aacaaggagg tcaggaccat
     7141 gaataattgg atcatagttg ctcaattatc cgtcacagtt atcaacgaaa tcatcgacat
     7201 catgaaagaa aagcagaagg gagggaaata gcatgaaaat caatcgatac atcacaagag
     7261 gaattaatga aagtattcca ctagaccttc aaatcttact ttggcacatg gtagaaaaaa
     7321 aagataacca gcctcataca gattacctac acatttttaa attacaagaa gatgagaata
     7381 tactctcaat cacacatgaa caagaacaac ccacatacaa attggaatat cactatacaa
     7441 actatgaaaa aaatcaaaat gcattaccta agaaagtcta cgtcattcgt gaagatgacg
     7501 tggacgcttt ttattatgtg atgcttttac cagaagaata ctaaaggaag tgacgatgat
     7561 gaatacaatc aaaagtacga tacacacaga agccatattt agcgatgatg aacagcaccg
     7621 ctatttactc aagaaaacat gggatgaaaa gaaagctgca tgcacagtga taacgatgta
     7681 tcctcattta gacggtgtat tatcactcga tctcacaact gttcttatcc tcaaccaatt
     7741 agccaattca gaacgatacg gtgctgtata tcttgtaaat ctattctcta atattagaac
     7801 acccgaaaac ctcaaacata tcaaaaatcc atacgatgag cacactgata ttcatttgat
     7861 gaaagcgatt agtgaaagtg acacagtgat tcttgcttat ggtgcctatg cgaagcgacc
     7921 agttgttatc gaccgtgtcg aacaagtgat ggaaatgtta aaacctcata aaaagaaagt
     7981 aaaaaagctc atcaatccag taacaaatga aattatgcat ccactcaacc ctaaggcacg
     8041 tcaaaaatgg attttgaaat catagcaaat acatggaggt caatatggaa acaaaacaaa
     8101 tcaacatcgt tttactgtaa atgatattgt tgaaacaatt cctgacaatg aattcgacga
     8161 attcagacat caccgtggtg caacttcgta ccatcctaaa atgatgttaa aagtgattct
     8221 atatgcctac acacaatctg tattctcagg tcgtaaaata gaaaaaatgc ttaatgatag
     8281 catccgaatg atgtggctat cacaaaatca aaaaccttct tataaaacaa ttaatcaatt
     8341 tagagtaaat ccaaaagtag atgctttatt agaatcttta tttattcaat tttacagtca
     8401 gtgtgtaaaa caaaatctta tagatgataa agctattttt attgatggta caaaaattga
     8461 agcaaatgcc aatcgatata catttgtatg gaaaaagagt attcaaaacc atgaatcaaa
     8521 gatgaatgag gattctaaag ccctctacca tgaattggta accaataaaa tcataccgga
     8581 aattaaagaa gatcatgata atgaattaac aaaagaagaa atagatttga ttggtagtca
     8641 cttagataaa gaaatcgaag atttaaacca acatatcaac aatgaaaaat gtactaaaac
     8701 aagaaaacaa atacgtctca aaagaactaa aatcaaaaaa tacaaaaagc aaatcaatga
     8761 ttattttgag cgaaagtatc gatacgaatt tcaaaaatct attttaaagg atagaaatag
     8821 ttattctaag acagattatg atgcgacatt tatgagaatg aaagaagatc acatgaaaaa
     8881 tggacaactt aagccagggt ataatttaca aatagcaaca aattcccaat ttgttttatc
     8941 ttataatgtg tatcaaaatc caacggatac tagaacgatg attccatttt taaattcaat
     9001 tcaagagacc tacggtcatt tacctgaata tattgtagct gatgcaggtt atggtagtga
     9061 atcaaattat aaggcaatta tagatgactt taatcgaacg ccactcataa catatggaat
     9121 gtttataaaa gataaaacta aaaaatataa aagtgacatc tttaatactc aaaattggaa
     9181 ctatgacgaa attaatgacg aattcatttg tccgaataat aa
//
LOCUS       DAMQWL010000094         9078 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.095, whole genome shotgun sequence.
ACCESSION   DAMQWL010000094 DAMQWL010000000
VERSION     DAMQWL010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9078
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.095"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(181..855)
                     /locus_tag="PF788_002055"
     CDS             complement(181..855)
                     /locus_tag="PF788_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001124447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304309.1"
                     /translation="MAQIKNYITQDDGTTTVVIEGAELGDKETLLLDNGYKVECDLRI
                     EDPFKITDKQRRKIFALCNDIESHTGQPRDYMRHLFQEYVTVLYGYDKSISLSDCTRM
                     QANQIIEVTLDWIFHNDIPLSYKTSDLLKQDKSFLYWSTINRNCVICGKPHAELAHYE
                     AVGRGMNRNKMNHYDKHVLALCREHHNQQHAMGVKSFDDKYHLHDSWLKVDGRLNKML
                     KGEKNE"
     gene            complement(867..1301)
                     /gene="ssb"
                     /locus_tag="PF788_002056"
     CDS             complement(867..1301)
                     /gene="ssb"
                     /locus_tag="PF788_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDG6304310.1"
                     /translation="MINRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGER
                     EADFINVVVFKKQAENVERYLSKGSLAGVDGRLQTRSYENKDGQRVFVTEVVADSVQF
                     LEPKSNNQQQNNSYNAPQNRQQNNPFANANGPIEIADDDLPF"
     gene            complement(1301..1924)
                     /locus_tag="PF788_002057"
     CDS             complement(1301..1924)
                     /locus_tag="PF788_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000139726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1071 domain-containing protein"
                     /protein_id="HDG6304311.1"
                     /translation="MTEQTLFEQLNSKNVNDHTEQKNGLTYLAWSYAHQELKKIDPNY
                     TVKVHEFPHPDISTENYFVPYLATPEGYFVQVSVTVKDSTETEWLPVLDFRNKSLAKG
                     SATTFDINKAQKRCFVKASALHGLGLYIYNGEELPSASDNDITELEERINQFVNLSQE
                     KGRDATIDKTMRWLKISNINKLSQKQIAEAHQKLDAGLKQLDSEEKQ"
     gene            complement(1917..2138)
                     /locus_tag="PF788_002058"
     CDS             complement(1917..2138)
                     /locus_tag="PF788_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2483 family protein"
                     /protein_id="HDG6304312.1"
                     /translation="MKQTVTYLIKHKDENLFITNRPTEVNDTVKYSTDMRDAREFDGL
                     DKTVIDMSKHKAIKKTVTETIEYEEVEHD"
     gene            complement(2148..2408)
                     /locus_tag="PF788_002059"
     CDS             complement(2148..2408)
                     /locus_tag="PF788_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1108 family protein"
                     /protein_id="HDG6304313.1"
                     /translation="MYYEIGEIIRKNIHVNGFDFKLSILKGHMGISIQVKDMNNVPIK
                     HAYVVDENDLDMASDVFNQAIDEWIEENTDEQDRLINLVMRW"
     gene            complement(2502..2663)
                     /locus_tag="PF788_002060"
     CDS             complement(2502..2663)
                     /locus_tag="PF788_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1270 domain-containing protein"
                     /protein_id="HDG6304314.1"
                     /translation="MSNIYKSYLVAVLCFTVLAIVLMPFLYFTTAWSIAGFASIATFI
                     FYKEYFYEE"
     gene            complement(2656..2877)
                     /locus_tag="PF788_002061"
     CDS             complement(2656..2877)
                     /locus_tag="PF788_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500570.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304315.1"
                     /translation="MIKNSLQAKELAVILSVSKSKAGQIIRELNKELEDEGYIAIRGR
                     IPVQLARKKSPYHDLSDQRIMEELKKENE"
     gene            2948..3601
                     /locus_tag="PF788_002062"
     CDS             2948..3601
                     /locus_tag="PF788_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001803402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304316.1"
                     /translation="MNNINLTQRQLDLIKKNQAILSKLPVEAYAKAANTMNNSYVMNA
                     LEIQSTVNNVMNSIRINQSKLSNWASYMHQVTKNHPMFKSNLFSNEVLNSFIKSTSIP
                     KNDILKMSYALRNLNVDVANSSTFIKSINPAHPVEQKQHESNNYSGKKIVDIMHINHS
                     SLGFINASSVGVSGNAIWDFLLKFINNEPINTPFYISVLFIAYFCYLLTSFSNSNDD"
     gene            complement(3611..3754)
                     /locus_tag="PF788_002063"
     CDS             complement(3611..3754)
                     /locus_tag="PF788_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000939501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304317.1"
                     /translation="MLQKFRIAKEKNKLKLNLLKHANSNLETSNNPELLRAVAELLKE
                     INR"
     gene            complement(3770..4522)
                     /locus_tag="PF788_002064"
     CDS             complement(3770..4522)
                     /locus_tag="PF788_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001148641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HDG6304318.1"
                     /translation="MQALQTKSNIGEMFNIQEKENGEIAISGRELHQALEVKTRYNDW
                     FERMINYGFEENIDYTALTQKRVTAQGNAINYLDHALTLDTAKEIAMIQRSEPGKRAR
                     QYFIQVEKAWNSPEMIMQRALKIANNTINQLETKIERDKPKIVFADAVATTKTSILVG
                     ELAKIIKQNGINIGQRRLFEWLRQNGFLIKRKGVDYNMPTQYSMERELFEIKETSITH
                     SDGHTSISKTPKVTGKGQQYFVNKFLGETQTT"
     gene            complement(4524..4709)
                     /locus_tag="PF788_002065"
     CDS             complement(4524..4709)
                     /locus_tag="PF788_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000933364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304319.1"
                     /translation="MLNLKELREEKGITRYQLAKLTELQNSTIRSIETEVKNPGFLTV
                     KKICDALQVDIANVKEK"
     gene            5154..5636
                     /locus_tag="PF788_002066"
     CDS             5154..5636
                     /locus_tag="PF788_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015977661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304320.1"
                     /translation="MEFIQSTLFSNVVAFLALGLSAYSIFYTRSQNKFSFVISDLNFY
                     YENNFVELNFVVANDSSRTHTLEELIFLDKNKNVLTPINVVLESDEYSSFGIYNPSYL
                     HAPIDKQLDKPEVMIANSSSEFLYKFELEPAFIKIVSNQRINKLKKYKLISTDSYEHN
                     "
     gene            complement(5737..5916)
                     /locus_tag="PF788_002067"
     CDS             complement(5737..5916)
                     /locus_tag="PF788_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000438352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304321.1"
                     /translation="MEQTIKQFLEFRKQFTPAQWHEINRIIDGQFSKKAAELQLDDQD
                     VEVIKNIITQQKIMK"
     gene            complement(5930..6166)
                     /locus_tag="PF788_002068"
     CDS             complement(5930..6166)
                     /locus_tag="PF788_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002469095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304322.1"
                     /translation="MPIDTKLLKSKMALKEHNIKTLSEEIGVNRDTLSNMIHGRTKPS
                     YPVINGIYFALELTPQEGRDIFFNEDLRKKKVLT"
     gene            6318..6632
                     /locus_tag="PF788_002069"
     CDS             6318..6632
                     /locus_tag="PF788_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012991010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304323.1"
                     /translation="MCFSKRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLK
                     NDTIESIATALNVNPAYLMGWVEENDDEVQHRAAHLEGELTDDEWQRVLDYADYIRSK
                     RK"
     gene            6645..7106
                     /locus_tag="PF788_002070"
     CDS             6645..7106
                     /locus_tag="PF788_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000525002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin"
                     /protein_id="HDG6304324.1"
                     /translation="MGLYEETLIQHDYIEIREADVLPDNLDGVWLGDLILIKRGLSDR
                     EKAGILFEELAHNKLTYGDIADYSNFNNRKFENYARRHGFISAVPLREIVEAHNYGVR
                     NLYELSEYLQLSEEYILEAIEQYKKIYGIGTHYGEYSITFEPLRVFKYKEI"
     gene            7290..7811
                     /locus_tag="PF788_002071"
     CDS             7290..7811
                     /locus_tag="PF788_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001102446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304325.1"
                     /translation="MNVPNSDIDIRPMLSNLQFYIGQTGKTDHDPLLDFSLLYEHAEL
                     GVRFTLSGLDRINNPYSDKNELYLMILLYDKVGGIGFDLRNFWTLKLNSETMKKSYET
                     IQFTLYKFEPNNRSYDFTNIYQQLKILVLPEEVDKEKIDKETFMNWMTWSQHNEILST
                     KIPIYHRKEINND"
     gene            7804..8274
                     /locus_tag="PF788_002072"
     CDS             7804..8274
                     /locus_tag="PF788_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000183249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304326.1"
                     /translation="MTNLMPTPHEEFLKRRFPNNNVPVNFNLDTENQKDDIMELNEND
                     DSGGGNMGNYVTRDEFNNSMREFKDEMRAMRTDMNNNMNSLRSELNTNINNLRIETQN
                     SISKLPSNFDVKNMLLENNKELEREAKQNRNTIISWTIGIVGLGFTIAKGFGWI"
     gene            8344..>9078
                     /locus_tag="PF788_002073"
     CDS             8344..>9078
                     /locus_tag="PF788_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HDG6304327.1"
                     /translation="MPVYKDGNTGKWYFSIRYKDVYGNNKRKMKRGFERKKDAKLAES
                     EFIQNVKYGYSDNQPFEYIFFDRLKNENLSARSIEKRTTEYNTHIKERFGNIPIGKIT
                     TTQCTAFRNYLLNDAGLSVDYARSVWAGFKAVINYAKKHYKLLYDPTLSVTPIPRTKP
                     QAKFITREEFDEKVEQITNDTSRQLTRLLFYSGLRIGEALALQWKDYDKIKGEIDVNK
                     KINLSNRKIEYNLKKESSKGIIPVPNL"
BASE COUNT         2762 a         1510 c         1547 g         3259 t
ORIGIN      
        1 cctgtattga gtatgacaag gggtacattg aaattacctc ttttggcaaa gcatttgcca
       61 aatgttgttt ttaatatcta gaaaatggtt ttcctacagc ttttttataa tttctaacat
      121 tcctaatctc ttccgccaag atgacgatta ggagtgctat ttttattact cttagtctat
      181 tcattcattt ttctctcctt tcaacatttt gtttaatctt ccatcaactt ttagccacga
      241 gtcatgcaag tgatatttat catcaaacga cttaacgccc atcgcatgtt gctggttgtg
      301 atgttcacga cataacgcta atacatgttt gtcatagtga ttcatcttgt ttctgttcat
      361 gcctctaccg actgcttcat aatgcgctaa ttcagcgtga ggctttccgc atattacaca
      421 gttgcggttg atagttgacc agtataagaa tgatttatct tgtttcagca agtcgcttgt
      481 tttgtagcta agcggtatgt cattgtgaaa tatccaatcg agtgttacct cgataatttg
      541 attcgcttgc atccgtgtac agtcacttaa cgaaatgctc ttgtcgtagc catacagaac
      601 cgttacatat tcttggaaca aatgcctcat atagtcacgc ggttgccctg tgtggctctc
      661 tatgtcgtta caaagcgcaa atatttttct tcgttgcttg tctgttattt tgaacgggtc
      721 ttcgattcgt aaatcacatt cgactttgta gccgttatct agtaataacg tttctttgtc
      781 tcctagctcg gcaccctcga taacgaccgt tgttgtgccg tcatcttgag tgatataatt
      841 tttgatttga gccatttaat cacgtcctag aacggtaaat catcatcagc aatttctatt
      901 ggaccattag cattagcgaa cggattattt tgttgtctat tctgtggtgc gttatatgaa
      961 ttgttctgtt gttggttgtt actcttcggt tctaagaatt gaacactgtc cgctactact
     1021 tctgtcacaa atacacgttg cccgtctttg ttttcgtagc tacgtgtttg tagtcgtccg
     1081 tctacacctg ccagcgaccc tttagaaagg tatctttcaa cattttcagc ttgtttcttg
     1141 aacactacta cgtttataaa gtctgcttca cgctcgcctt gagcattcgt aaatgttctg
     1201 tttactgcta atgtgaatgt ccctacattt acgccgtttg gtgtgcttct tagttctggg
     1261 tcttttgtta agcgtcctac taatactgtt ctgttaatca ttattgtttc tcctcgctat
     1321 ccaattgttt taatcccgca tctaattttt ggtgtgcttc tgcgatttgt ttttgactca
     1381 atttattaat gttagagatt tttagccatc tcatcgtttt gtcgatagtt gcatctcgac
     1441 ctttttcttg agataagttc acaaactgat taatacgctc ctctagttct gtaatatcat
     1501 tgtcacttgc acttggaagt tcctcgccgt tgtagatata taaacctaac ccgtgtaaag
     1561 ccgaagcttt aacgaaacat cgtttttgcg ctttgttgat atcaaaagtt gttgcactac
     1621 ctttagcaag cgatttattt ctaaagtcta atactggaag ccattcagtt tcagtactat
     1681 ctttcacagt cacagatacc tgtacaaagt agccttctgg tgtagccaaa taaggtacaa
     1741 aatagttttc tgtgctaata tccggatgtg gaaactcgtg cacttttact gtgtagttag
     1801 ggtcaatctt ttttaactct tgatgtgcat atgaccatgc tagataagtt aatccgtttt
     1861 tttgttctgt atgatcattc acgtttttac tgttcaactg ttcgaataat gtttgttcag
     1921 tcatgttcta cctcctcgta ctcaatagtt tctgtcactg ttttcttgat tgctttgtgc
     1981 ttagacatat caataacagt tttgtctagt ccgtcgaatt ctcttgcgtc tcgcatatca
     2041 gttgaatact tcactgtatc gttcacttcg gttggtcggt ttgtaataaa tagattttca
     2101 tctttatgct tgattagata agttacagtc tgcttcatag cgacctccta ccatctcatg
     2161 actaagttaa ttagtctgtc ctgttcgtct gtgttctctt caatccattc atctattgct
     2221 tggttaaata cgtctgatgc catatctaag tcattctcat ctacgacata agcatgttta
     2281 attggtacgt tgttcatatc tttaacttgt attgatatgc ccatatgacc ttttaaaatg
     2341 gatagcttaa aatcgaatcc gttaacatga atatttttgc gtatgatttc gcctatttcg
     2401 taatacatct tgacttcctc cgtttttcgt tttatattga acacgaatta attttgttaa
     2461 tcgtttgtca ctgttacttg ttggcgcaag tagcagtttt tttattcttc ataaaagtat
     2521 tccttataaa atatgaatgt cgctatgctt gcgaatcctg caattgacca cgctgtagtg
     2581 aagtatagaa acggcataag tacaatcgct aagactgtga agcatagtac tgctactagg
     2641 tagcttttat aaatgttact cattttcttt tttcaactcc tccattattc tctggtctga
     2701 taagtcgtga taaggggatt ttttcctagc taattggact ggtattctgc ctcgtatcgc
     2761 aatgtatcct tcatcttcaa gctctttatt cagttctctt attatttgtc ctgctttgga
     2821 tttagaaaca gataaaatta ccgcaagttc tttagcttgc aaactatttt ttatcatatc
     2881 tttttctcct ttttattttt gtgttgtgta taatttagtt atctcctagt gaaaggaggt
     2941 gataattatg aataatataa atctcactca acgacagtta gatttaataa agaaaaatca
     3001 agctatcttg tctaaattgc ctgtcgaagc ttacgctaaa gccgcaaata ctatgaataa
     3061 ttcgtatgtt atgaacgctc tggaaattca atcgacggtt aataatgtta tgaatagcat
     3121 tagaattaac caatcgaaat tatctaattg ggcttcctat atgcatcaag taactaagaa
     3181 tcatccaatg ttcaaatcta atttattttc taatgaggtt cttaatagtt ttataaaatc
     3241 tacgagcatt cctaaaaacg atattttgaa aatgtcttat gctcttagaa atttgaatgt
     3301 cgatgtagct aatagttcta cctttattaa atccatcaat cctgcccatc cagtagagca
     3361 aaaacaacat gaaagcaata attacagcgg taaaaaaatt gtcgacataa tgcatattaa
     3421 tcactccagt ttaggtttta ttaatgctag ttctgtaggt gtaagcggta atgctatttg
     3481 ggacttttta ttaaagttta ttaataacga accaataaat actccttttt atatttcggt
     3541 actttttata gcgtattttt gctatctatt aaccagtttt tcaaattcaa atgatgatta
     3601 gttgtcggat ttatcgatta atctctttaa gcaactctgc aactgctcgc aacagttcag
     3661 ggttgttact tgtttctaaa ttactgtttg catgttttag taaattaagt tttaatttat
     3721 ttttttcttt agcgattcta aatttttgta acatttgttg aacctccttt taagttgttt
     3781 gagtttcacc taaaaactta ttaacaaagt attgttgtcc tttgcctgtt acttttggcg
     3841 tcttactaat tgatgtgtga ccgtctgaat gtgtaattga tgtttcttta atttcgaata
     3901 actcacgttc cattgagtac tgtgtaggca tgttataatc cacacccttg cgtttaataa
     3961 ggaatccgtt ttgacgtaac cactcaaaca atctgcgttg cccgatgttt ataccgtttt
     4021 gtttaatgat ctttgctaac tctccaacta aaattgatgt cttagtagta gctactgcat
     4081 ctgcaaatac aatttttggt ttatcacgtt caatctttgt ttctaattga ttgattgtgt
     4141 tgttagcaat ttttaaagca cgttgcataa tcatttctgg gctattccat gctttttcca
     4201 cttggatgaa atattgtctt gcacgtttac cgggttcact gcgttgaatc attgcaatct
     4261 cttttgcagt gtctagtgtg agtgcgtggt ctaaataatt aatagcgtta ccttgagctg
     4321 ttactctttt ttgagtaaga gctgtataat caatattttc ttcaaagcca taattaatca
     4381 ttctttcaaa ccaatcgtta tatcttgtct taacttctaa tgcttgatga agttctcgac
     4441 cacttattgc gatttctcca ttttcttttt cttgaatatt gaacatttct ccgatgttcg
     4501 attttgtttg taatgcttgc attctatttc tcctttacat tagcgatatc aacttgtagt
     4561 gcatcgcata ttttttttac tgtgaggaaa ccggggtttt taacctctgt ttcgatagat
     4621 cgaattgtcg agttttgtaa ttccgttagc ttcgctagtt gatagcgtgt tatccccttt
     4681 tcttctctca attcttttaa gttcagcatc ttaccactcc ttattgtcca taacgatatt
     4741 tcgttatata attaatccaa ccccactaca ttgggaggtg atttccttgc ttatgcgagg
     4801 ttttaaatca tcctgtggtt ttataggtta gtaagtctaa attagaacat cgtttgttgt
     4861 gttccacagt caaccaagag acgttaacta gggtatgcgt actagaaggt agtaactttt
     4921 aggacgctag actttgacgg aaaacctaag caccatacag ggctggggac gataccagca
     4981 aaaattgtgc tgttagtcgt agtaattaga accgaacaaa atttccgtaa cacatacctt
     5041 ctacgacaag gtgtgtgttt tttattggaa acaacatgtt tgtaatgctt gcataatatt
     5101 tatgctcctt tcgtgtataa tgttgttatc aaatatttaa ggtggttatt cttatggaat
     5161 tcatacaatc tactttgttt tcaaacgttg tagcttttct agctttaggt ctatctgcat
     5221 actcaatttt ttatactcgt tctcaaaata agttcagttt tgttattagc gatcttaatt
     5281 tctactatga aaataatttt gtagaattaa attttgtcgt cgctaatgac tcgtctagaa
     5341 ctcatacttt agaagaatta atatttttag ataaaaacaa aaatgtttta acacctatta
     5401 acgtagtatt ggaatctgat gaatattcat ctttcggtat atataatcca agttatttgc
     5461 atgctccaat cgataaacaa ttagataaac cagaagttat gatagctaat tcgtcatcag
     5521 agtttttata taaattcgaa ttagaacctg cgtttataaa gattgtttct aatcaacgaa
     5581 taaacaaact taaaaagtat aagttaatct ctaccgattc ttacgagcat aattaatatc
     5641 gctaaattca tgaaaaagtg aattgctagt agtgtgttgg tcagcatcat tttgtatctt
     5701 cctttcgtga tttttgaata acttttattc aaattgttac ttcataatct tttgttgagt
     5761 aataatattt ttaataacct caacatcttg gtcgtcgagt tgtagctcgg cggctttttt
     5821 actaaattgt ccgtcaataa ttctgttgat ttcatgccac tgtgcgggtg tgaattgctt
     5881 tctaaattct aaaaattgtt tgattgtttg ttccatttgt tgttcctcct taagttaaaa
     5941 ctttcttttt gcgtaagtct tcgttaaaaa aaatatctct tccttcttga ggtgtcaatt
     6001 ctaacgcaaa ataaatacca tttattaccg ggtaggatgg ttttgttctc ccgtgtatca
     6061 tgttagataa agtatctcta ttgacaccaa tttcttcaga aagggttttg atgttatgtt
     6121 ctttcaaagc cattttagat ttcaaaagtt tagtatctat aggcatttct tttcaccacc
     6181 tttcgcatta cgtaagtaat cttatcatga tgttacaaaa gaggtcaagc attttacgaa
     6241 agttttttag aaaaatattg caaatgccga aagttttcct tataatagaa ctatcaagta
     6301 aaaggagctg tattacgatg tgcttttcaa aaagaatgaa acaatcaaga gaaaaacaag
     6361 gtatgacttt ggccgaacta ggaagaaaaa ttggtaaaac tgaagctact gtacaacgtt
     6421 atgaaagcgg aaatatcaaa aatctaaaaa acgatactat agaaagtata gctactgcat
     6481 taaatgttaa tcctgcgtat ttaatggggt gggttgaaga aaacgatgat gaagtacaac
     6541 atcgtgcagc tcatcttgaa ggagaattga cagatgacga atggcaaaga gttttagatt
     6601 atgcagatta tataagaagc aaacgtaagt aaaggatgta tcagatggga ttatatgaag
     6661 aaactttaat acaacatgat tatattgaaa taagagaggc tgatgtgctt ccagataatt
     6721 tagacggggt atggttagga gatttaattt tgataaagcg tggtttatca gatagagaaa
     6781 aagcaggaat tctcttcgaa gaattagcgc ataataaact tacatacggt gatatagccg
     6841 attactcgaa tttcaacaat cgcaagttcg aaaattacgc aagacgacac ggctttatct
     6901 cagcagtccc gttacgcgaa attgttgaag cgcacaatta cggtgtacgt aatttatatg
     6961 agttgtctga gtatctacaa ttaagcgaag aatacatatt agaagcaata gaacaatata
     7021 aaaagatata tggtattgga actcactatg gcgagtattc tattacattt gagccgttga
     7081 gagtttttaa atataaggaa atataaacaa aggagaaatg aaaatgagaa aatataattt
     7141 tgataaattc ttcttatata tggcggtact gtcattacca atagtcatat tttttccatt
     7201 aatgttaagc atcccaatca tcttttttat tttttcaata agaaagaagg aagattaata
     7261 gtgcctgtgt ggcgtgagga ggaaatagaa tgaacgttcc aaatagcgat attgatatac
     7321 gccctatgtt aagcaattta caattttaca taggtcaaac aggaaaaaca gaccatgacc
     7381 cattattaga tttctcttta ctatatgagc atgcagaact aggcgtgcgc tttacattaa
     7441 gtggtttaga tagaattaat aatccatata gtgataaaaa cgaattatat ttgatgattc
     7501 ttttgtatga taaagtcgga ggtattggtt ttgatttacg taatttttgg acattaaagt
     7561 taaatagtga aaccatgaaa aaatcatatg aaactattca attcacacta tataagttcg
     7621 aaccgaataa tagaagttat gattttacta atatctatca acagttaaag atattagttt
     7681 tgccagaaga agttgataaa gagaaaatcg ataaagaaac atttatgaac tggatgacgt
     7741 ggtcgcaaca caatgaaata ttaagtacaa aaatacctat atatcatcgt aaggagataa
     7801 ataatgacta acttaatgcc tactccacat gaagagtttt taaaaagaag atttccgaac
     7861 aataatgttc cggttaactt caatttagat actgaaaacc agaaagatga tataatggaa
     7921 ttaaatgaaa acgatgattc cggaggtggt aatatgggca attacgtaac aagagacgaa
     7981 ttcaataata gtatgagaga gttcaaagat gagatgcgtg ctatgagaac tgacatgaac
     8041 aataatatga acagtttacg ttctgaattg aatacaaata tcaataattt acgtatcgaa
     8101 acgcaaaatt ctattagtaa gctaccaagt aattttgatg taaaaaatat gttgctagaa
     8161 aataataaag aattagaaag agaagcaaaa caaaacagga ataccattat aagttggact
     8221 attggtattg ttggtttagg attcacaata gctaaaggtt ttggttggat ataatttaat
     8281 gatttttagg gtagcccgcc tacccttatt attttttgcc aattttgagg agggagaagt
     8341 aaaatgccag tatataagga tggtaataca ggtaaatggt atttttccat tagatataaa
     8401 gatgtatacg gtaataacaa acgaaaaatg aagcgtgggt ttgaacgtaa gaaagatgcc
     8461 aaactagctg aaagcgaatt tatacaaaat gttaaatatg gatactcgga caatcaaccc
     8521 tttgaatata tattttttga tcgtttaaaa aatgaaaatc tttctgcacg ctcaatagaa
     8581 aagcgaacta cagaatataa tactcacata aaagaaaggt tcggaaatat ccctattggc
     8641 aaaatcacta ctacgcaatg tactgctttc aggaattatt tgttaaacga tgcaggtctt
     8701 tctgttgact atgcacgatc tgtgtgggca ggttttaaag cagttatcaa ttacgccaaa
     8761 aagcattaca agctcttata cgaccccaca ttatcggtaa ctcctattcc cagaacaaaa
     8821 ccacaagcta aatttatcac tcgtgaagaa tttgatgaaa aagtagaaca aatcacaaat
     8881 gatacttctc gtcagctaac tagactgtta ttttattctg gtcttagaat aggagaagct
     8941 ttagctttgc agtggaaaga ttacgataaa ataaaaggcg aaattgacgt aaataagaaa
     9001 atcaatttaa gtaatagaaa aattgaatat aatctaaaaa aagaaagctc taaagggata
     9061 atacctgtac caaattta
//
LOCUS       DAMQWL010000095         9003 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.096, whole genome shotgun sequence.
ACCESSION   DAMQWL010000095 DAMQWL010000000
VERSION     DAMQWL010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 9003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9003
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.096"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(247..1083)
                     /locus_tag="PF788_002074"
     CDS             complement(247..1083)
                     /locus_tag="PF788_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HDG6304328.1"
                     /translation="MDEQQWTGQLDLTVFFDGNRSVSRDIFFEKALKVIRPVYLNQST
                     IPTFYIVNVGGGYLDGDRYRMNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLK
                     DNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHL
                     INEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYET
                     ISSYSNTFDCRVAISQLPTHGFAVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLR
                     KY"
     gene            complement(1083..1697)
                     /gene="ureG"
                     /locus_tag="PF788_002075"
     CDS             complement(1083..1697)
                     /gene="ureG"
                     /locus_tag="PF788_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HDG6304329.1"
                     /translation="MANPIKIGIGGPVGAGKTQLIEKVVKRLSKEMSIGVITNDIYTK
                     EDEKILVNSGVLPESRIIGVETGGCPHTAIREDASMNFAAIDELLERHDDIELIFIES
                     GGDNLAATFSPELVDFSIYIIDVAQGEKIPRKGGQGMIKSDFFVINKTDLAPYVGASL
                     EQMAEDTKVFRGKRPFTFTNLKTDEGLDEVIDWIERDTLLKGLS"
     gene            complement(1710..2399)
                     /locus_tag="PF788_002076"
     CDS             complement(1710..2399)
                     /locus_tag="PF788_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreF"
                     /protein_id="HDG6304330.1"
                     /translation="MIDHTHLRLFQFCDSQFPTGAFSHSFGLETYIQRNIIHDDHTFI
                     AWLKMFLQEQLTYSDGLAMRLVYDALENDDTQKVLHIDKLMFVQNLPKETRVGAKQMG
                     TRMVKLALELYNSPWIAWYHQQMQDKKAKLNPAICFTMLGHHLGVDIETIIDYYLYQN
                     VSSLTQNAVRAIPLGQTAGQKIVTHMIPYIEGTRKQIFELKEADFGMTAPGLELNQMA
                     HENVNVRIFIS"
     gene            complement(2392..2844)
                     /gene="ureE"
                     /locus_tag="PF788_002077"
     CDS             complement(2392..2844)
                     /gene="ureE"
                     /locus_tag="PF788_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreE"
                     /protein_id="HDG6304331.1"
                     /translation="MIVEEIQGNIANLSNSEKQKHVEKVYLENSDLVKRIQRVVTDHG
                     TEIGIRLKQPIDLQYGDILYADDHNMIIVDVNSEDLLVIQPRTLQEMGDIAHQLGNRH
                     LPAQFTETEMLVQYDYLVEDLLKSLGIPYVREDRKVNKAFRHIGHSHD"
     gene            complement(2857..4572)
                     /gene="ureC"
                     /locus_tag="PF788_002078"
     CDS             complement(2857..4572)
                     /gene="ureC"
                     /locus_tag="PF788_002078"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002447295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HDG6304332.1"
                     /translation="MSFKMTQNQYTSLYGPTVGDSIRLGDTNLFAQIEKDYAVYGEEA
                     TFGGGKSIRDGMAQNPRVTRDDVNVADLVISNAVIIDYDKVVKADIGIKNGYIFAIGN
                     AGNPDIMDNVDIIIGSTTDIIAAEGKIVTAGGIDTHVHFINPEQAEVALESGITTHIG
                     GGTGASEGSKATTVTPGPWHIHRMLEAAEGLPINVGFTGKGQATNPTALIEQINAGAI
                     GLKVHEDWGATPSALSHALDVADEFDVQIALHADTLNEAGFMEDTMAAVKDRVLHMYH
                     TEGAGGGHAPDLIKSAAFSNILPSSTNPTLPYTHNTVDEHLDMVMITHHLNAAIPEDI
                     AFADSRIRKETIAAEDVLQDMGVFSMISSDSQAMGRVGEVITRTWQVAHRMKEQRGPL
                     DGDFEHNDNNRIKRYIAKYTINPAITHGISEYVGSIEPGKLADIVLWDPIFFGVKPEL
                     VVKGGLINSAVNGDANGSIPTSEPMKYRKMYGQYGGNLTSTSMTFVSKTAYENGINRA
                     LNLKRMVRPVKNIRQLSKADMKNNSATPKLDVDPQTYEVYVDGEKITSNAATELPLTQ
                     RYFLF"
     gene            complement(4569..4979)
                     /locus_tag="PF788_002079"
     CDS             complement(4569..4979)
                     /locus_tag="PF788_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HDG6304333.1"
                     /translation="MIPGEIITKSTEVEINNHHPETVIEVENTGDRPIQVGSHFHFYE
                     ANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAGKRKIFGFRGMVNGPID
                     ESRVYRPTDENDEYAGVFGDNGAENVNKKGGKRS"
     gene            complement(4993..5295)
                     /locus_tag="PF788_002080"
     CDS             complement(4993..5295)
                     /locus_tag="PF788_002080"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HDG6304334.1"
                     /translation="MHFTQREQDKLMIVVAAEVARRRKARGLKLNHPEALALISDELL
                     EGARDGKTVAELMSYGRQILNKEDVMDGVEHMITDIEIEATFPDGTKLITVHHPIV"
     gene            5555..6460
                     /gene="yut"
                     /locus_tag="PF788_002081"
     CDS             5555..6460
                     /gene="yut"
                     /locus_tag="PF788_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016266007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HDG6304335.1"
                     /translation="MKIIDVLLKNISQVVLISNKWTGLFILIGLFVADWTIGLAAIVG
                     SIIAYTFARFINYSEAEINDGLAGFNPVLTAIALTIFLDKSGLDIVITMIATLLTLPV
                     AAAVREVLRPYKVPMLTMPFVIVTWFTILLSGQVKFVDTSLKLMPQNIETVNFSNNDR
                     IHFIQSLFEGFSQVFIEASVIGGVCILIGILIASRKATLLAVIASLLSFIIVALLGGN
                     YDDINQGLFGYNFVLMAIALGYTFKTAINPYISTFLGVLLTVVVQLGTTTLLEPFGLP
                     ALTLPFIIVTWILLFAGIKHDKVDA"
     gene            6677..7831
                     /locus_tag="PF788_002082"
     CDS             6677..7831
                     /locus_tag="PF788_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDG6304336.1"
                     /translation="MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPY
                     KNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSFLGELDGATALSIGWHVSVVGQI
                     YEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGV
                     KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLIL
                     NDVKVPLKHLVETEKSKAPNGWILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIA
                     TLPTVQQNLGKMETLLLCARQFLWSTAKGYQQYKDDSQIRNPTSASKVMVMNQGLEVI
                     DLAMRIVGAKSLEMNRPLQRYYRDMRAGLHNPPMEDAAYTNIAKSITDTF"
     gene            8045..8953
                     /locus_tag="PF788_002083"
     CDS             8045..8953
                     /locus_tag="PF788_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDG6304337.1"
                     /translation="MKKLLLPLIIMLLVLAACGNQGEKNNKAETKSYKMDDGKTVDIP
                     KDPKRIAVVAPTYAGGLKKLGANIVAVNQQVDQSKVLKDKFKGVTKIGDGDVEKVAKE
                     KPDLIIVYSTDKDIKKYQKVAPTVVVDYNKHKYLEQQEMLGKIVGKEDKVKAWKKDWE
                     ETTAKDGKEIKKAIGQDATVSLFDEFDKKLYTYGDNWGRGGEVLYQAFGLKMQPEQQK
                     LTAKAGWAEVKQEEIEKYAGDYIVSTSEGKPTPGYESTNMWKNLKATKEGHIVKVDAG
                     TYWYNDPYTLDFMRKDLKEKLIKAAK"
BASE COUNT         2997 a         1456 c         1564 g         2986 t
ORIGIN      
        1 acaaaaagca aatattcaaa aactgatttc agaattagaa gaatacatta aaaattaaat
       61 caaggttaat tgcgtttaat aacattgaac gataacaatt tattaaaacg aagttattta
      121 ttcagcattg ggacataaaa ttaacttaaa atttaaatat tgaagatgct ttaattaaag
      181 ttaaagacta gccatacctt atttcagctt attaagcttg aaacaaggta cactagtctt
      241 tttattttaa tattttctta gaaaatcaag tttacgatca taaatatttt ctgcgatata
      301 gctttggatg gttccaagta ttttctctat aatttgtgtg cgataagcaa aaattctaac
      361 tgcaaaacca tgtgtaggca attgagaaat agcaacacga caatcgaatg tattgctata
      421 agaactaatg gtttcataaa ctgaatcgat tagtttttgg ttaacatctt cgtgtatgaa
      481 gtaagcagag ccataatgag agtaatgttc catataacct atttcattga tcgattgttt
      541 attaggattc aataataaat tatcatatgt gactaactca tcttcaatat aaatttcatt
      601 tattaaatgc atatattgat acttgaaggc ttcgccagtt tttgaataac caggagttaa
      661 aatatcagta taaaataatg aactagaatt attgagattg aacgtattgt gttgataaaa
      721 tttagcattt tcatatgcga tgattggatc agcgacatat tctaaatatg cgttatcttt
      781 caaattaaaa gtttgatact gctcaacatg attggaaggt gtcttgtata tttttgttgc
      841 accttgagat gtcaatgtca ctttagcgtt atcttcgaca ttcacattca tacggtaacg
      901 atctccatct aaatagccac cacctacatt tactatataa aatgtaggaa tggtagattg
      961 atttagataa actggacgta tcactttaag tgctttttca aagaaaatat ctcttgatac
     1021 tgatcgattg ccatcgaaaa acactgttaa atcaagttgc ccagtccatt gttgttcatc
     1081 cattatgata atcctttgag taaagtgtcg cgttcaatcc aatcgataac ttcatccaaa
     1141 ccttcgtcgg tttttaagtt agtaaaagta aatggacgtt taccacgaaa tactttagta
     1201 tcttcagcca tttgttctaa tgatgcacct acatagggag ctaaatcagt tttgttaatt
     1261 acaaagaaat ctgacttaat cataccttga ccacctttac gtggaatctt ttcaccttga
     1321 gcaacatcga taatatatat tgaaaagtca acaagttctg gactaaatgt tgctgctaag
     1381 ttatcgccac cagattctat gaaaattagt tctatatcgt catgacgttc taataattcg
     1441 tctattgctg caaagttcat agatgcatct tcacgaatcg cagtatgagg acatccacca
     1501 gtttcaacac caatgatacg actttcaggt agaactcctg aatttactaa tatcttttcg
     1561 tcttcttttg tatatatatc atttgtaata acgccgatac tcatttcttt tgaaagacgt
     1621 tttacaactt tttcaattaa ttgtgtttta cctgcaccta caggaccacc aataccaatt
     1681 ttaatcggat ttgccacaat tataacctcc tatgatatga aaattctaac attgacgttc
     1741 tcatgcgcca tttgatttag ttctaaacca ggcgctgtca tgccaaaatc tgcttctttt
     1801 aattcgaaaa tctgctttct tgttccttct atataaggaa tcatgtgagt aactatcttt
     1861 tgaccagcag tttgtccaag tggaatagca cgaacagcat tttgagttaa acttgaaaca
     1921 ttttgatata aatagtaatc aataatcgtt tcaatatcta cacctaaatg atggcctagc
     1981 atagtaaaac aaatagctgg atttaacttt gctttcttat cttgcatttg ttgatgatac
     2041 caagcaatcc atgggctatt ataaagttct aaagccaatt taaccatgcg agtccccatt
     2101 tgttttgcac caacacgtgt ttctttaggt aagttttgaa caaacatcag tttatctatg
     2161 tgtaatactt tttgtgtatc atcattttcc aatgcatcat aaactaaacg catggctaaa
     2221 ccatcagaat aggtaagttg ctcttgtaaa aacattttta accaagcaat aaaagtatga
     2281 tcgtcatgaa ttatatttcg ttgaatatat gtttcaagac caaatgaatg actgaaagca
     2341 cctgttggaa actgtgaatc acagaactga aataatctta agtgtgtatg atcaatcatg
     2401 agaatgccct atatgtctga aagccttatt aactttacgg tcttctcgaa catatgggat
     2461 gcctaaactt tttaataaat cttcaactaa ataatcatat tgtactagca tttcagtctc
     2521 tgtaaattgt gctggcaaat gacgatttcc taattgatgg gctatatctc ccatttcttg
     2581 caatgttctt ggttgaatca ctaaaagatc ttctgaatta acatccacaa taatcatatt
     2641 atggtcatct gcgtataaaa tatctccata ttgtaagtca ataggttgtt ttaaacgaat
     2701 gcctatttca gtgccatggt ctgtaacgac tctttgaata cgtttaacaa gatctgaatt
     2761 ttcaaggtat actttttcga cgtgcttttg tttttctgaa tttgacaaat tggcaatatt
     2821 gccttggatt tcttcaacaa tcattctatg ttcctcctag aataagaagt atctttgagt
     2881 taatggtaac tcagttgctg cattacttgt aattttttct ccatctacat atacttcata
     2941 tgtttgtgga tcaacgtcta atttaggtgt tgcactgtta tttttcatat ctgctttaga
     3001 taattgtcta atatttttaa ctggacgcac catgcgtttt aaatttaatg cacgattgat
     3061 accattttca taagcagttt tagacacgaa tgtcattgac gtacttgtaa ggtttccgcc
     3121 gtattgacca tacattttac ggtacttcat cggttcagat gtaggtatag aaccatttgc
     3181 atcgccattt acggcagagt taattaatcc gccctttaca actaattcag gtttaacccc
     3241 aaagaaaatt gggtcccata agacaatgtc agctagtttg cccggctcga tagatcctac
     3301 atattcagaa ataccatgtg taattgctgg gttaattgta tatttagcga tataacgttt
     3361 gatgcgatta ttatcattat gttcaaaatc accatctaaa ggaccacgtt gttctttcat
     3421 gcgatgtgct acttgccatg ttcgtgtaat tacttcacct acacggccca ttgcttgtga
     3481 atcggaacta atcatactga atacacccat atcttgcaga acatcttctg ctgcaatcgt
     3541 ttctttacga atacgtgaat ctgcgaatgc gatatcttca ggaatagccg catttaaatg
     3601 gtgagtaatc attaccatat ctaaatgttc atctacagta ttatgtgtat aaggcaaagt
     3661 tggatttgta gatgaaggta aaatatttga aaatgcagcg gatttaatta aatcaggcgc
     3721 atgaccgcca ccagcacctt cagtatggta catatgaagt acacggtctt taacagcagc
     3781 cattgtgtct tccataaatc ctgcttcatt taaagtatct gcatgtaatg caatttgaac
     3841 atcaaattca tcagcaacat ctaatgcatg actcaaagca gatggtgttg caccccagtc
     3901 ttcatgtact tttaatccaa ttgctccggc attgatttgt tcaatgagtg cagttggatt
     3961 tgttgcttgt cctttacctg taaaaccgac attaatcggt aaaccttcgg cagcttctaa
     4021 cattctatga atatgccatg gacctggagt tacagttgtt gctttagaac cttctgaagc
     4081 accagtacca ccaccaatat gagtcgtaat accactttct aatgcgacct ctgcttgttc
     4141 aggattaata aaatgaacat gagtatcaat accaccagca gtgacgattt taccttcagc
     4201 ggcaatgata tctgttgttg aacctataat aatgtcgaca ttatccatta tatctgggtt
     4261 gccggcatta cctatggcga aaatataacc atttttaatg cctatatcag ctttaaccac
     4321 tttatcgtaa tcgataataa cggcattaga aatgacaagg tctgcaacgt tcacgtcatc
     4381 acgtgttaca cgaggatttt gcgccatacc gtctctaata gatttaccac caccaaaagt
     4441 agcttcttca ccataaaccg catagtcttt ttctatttga gcaaatagat tcgtatcacc
     4501 taaacgaatg gaatctccaa cagttggacc gtataagctc gtatattgat tttgcgtcat
     4561 tttaaagctc atgatctttt tcctcctttt ttattcacgt tttcagcacc gttatctccg
     4621 aatacacctg catattcatc attttcatca gttgggcgat agacacgtga ctcatcgata
     4681 ggaccattga ccataccacg aaaaccaaaa attttacgtt tgccagcata ttcaactaat
     4741 tgaacttctt ttttatcccc aggttcaaat cgaacagctg ctccagctgg aatatctaaa
     4801 tgttttccat atgccatttc acgttcgaaa tctaatgctg catttgcttc ataaaaatga
     4861 aaatgtgagc ccacttgaat tggtcgatct cctgtatttt caacttcgat aactgtttca
     4921 ggatgatggt tattaatttc aacctctgta ctttttgtaa taatttctcc tggtatcatt
     4981 tgactgcctc ctttaaacaa tagggtgatg tactgtgatt aacttagtac catcggggaa
     5041 cgtagcctcg atttcgatat ctgtaatcat gtgttcgaca ccatccatga catcttcttt
     5101 gtttagaatt tgtctaccat aactcattaa ctctgcaacg gtcttaccat cgcgtgcacc
     5161 ttctaataat tcatcgctga ttaaagctaa tgcctcagga tgatttagtt tcaaaccacg
     5221 tgctttacga cgacgtgcaa cttccgccgc cactacaatc attaatttgt cttgctctcg
     5281 ttgtgtaaaa tgcaaattaa aacccccaat ttcatattag atacaattta caaaatttat
     5341 attaatccta attgttgtga taaacaagta atatacaaag ttcaatgtgt aattagaaaa
     5401 ttatattttt agcatatccg atattgaagc aaacaatcta atcgaaaaca aatagtggaa
     5461 tatatttatg taaaaaccaa aatagttttt aatataactt ttcatagaat agtagtatat
     5521 taatgagtaa tgattcaaag gaaaggtgaa agatttgaag ataatagatg tgcttttgaa
     5581 aaatatatct caggttgtgt taattagtaa taaatggaca ggattattta tcttaatagg
     5641 attatttgta gccgattgga caattggatt agcggctatt gtaggtagca tcatcgccta
     5701 tacttttgcg cgttttataa attatagtga ggcagagatt aatgatgggt tagctggatt
     5761 taatccagtg ctaactgcca ttgcgttaac aatcttttta gataagtcag gattagatat
     5821 tgttataaca atgatagcaa ctttattaac gttaccagtt gctgctgcag tgagagaagt
     5881 tttaagacca tataaagttc cgatgctgac gatgcctttt gtcattgtga cttggtttac
     5941 aattttactt tcaggacagg ttaaatttgt agatacatcg ttaaagttaa tgcctcaaaa
     6001 cattgaaacg gttaatttta gcaacaatga tagaatacat ttcattcagt cattatttga
     6061 aggattcagt caagtattta tcgaagcgag tgtaattggt ggcgtatgta ttttaatcgg
     6121 catattgata gcatcaagaa aagcaacact cttagctgtt atagctagtt tgttaagctt
     6181 tatcattgta gctctattag gtggtaatta tgatgatatt aatcagggat tattcggtta
     6241 taactttgta ttaatggcaa tcgcactagg atatacattt aaaacagcga ttaaccctta
     6301 tatttcgact tttttaggtg tgttattaac agtagtggtg caactaggta caacaacatt
     6361 gcttgaaccg tttggcttac ctgcattaac attgccattt attatcgtga catggatttt
     6421 attatttgct ggtattaaac atgacaaagt agatgcttga tagttaaatc aaacctaata
     6481 ttgtttgaat atcaccttaa actatacagc gaattgtata gtttaaggtg tatttttatg
     6541 gataaaatta agtgcatact taatcgaatt atcagttttc ttttaattgt tcacagcacg
     6601 ttccttttta tttttaaagt cgagtgttaa actaggaata aataatttat attgtgtgtt
     6661 gtgtggggtg actaatatga atgatatgga taattccttt ttaataacaa cggaaattca
     6721 aagaaaatgg attgaaaaat tcaaagtaat tagagataca tttaaggcta aagctgaata
     6781 taatgatcaa catagccaat ttccatataa aaatattgaa tggttaatta aagaaggtta
     6841 tggaaaatta acgttaccaa aagcatatgg tggtgaaggt gcgaccatag aagacatggt
     6901 tattttgcaa tcatttttag gcgaacttga tggtgccaca gcattatcta ttggttggca
     6961 tgtgagtgtc gtaggacaaa tttatgaaca gaaattatgg tctcaagata tgttggagca
     7021 atttgctgtt gaaattaata atggtgcatt agttaataga gcagttagtg aagctgaaat
     7081 gggtagtcca acaagagggg gaagaccaag tacacatgct gttaaagctg atgatgggta
     7141 tattttaaat ggtgtgaaga catatacatc aatgagtaaa gcactaacac atattattgt
     7201 tgctgcttat atagaagaat tagaaagtgt tggttttttc ttagtagaca ggaatttgcc
     7261 tggtgttgaa attgccgata attgggacgt attaggtatg cgagcgacag aaagtcatga
     7321 tttaatatta aatgatgtaa aagtaccatt aaaacattta gtggaaacag agaaaagtaa
     7381 agcgccaaat ggttggatat tgcatatacc aagctgttat ttaggtatag cacaagctgc
     7441 tagaaattat gctgtagact ttgcaatcca acatagccct aatagtattg aaggaacgat
     7501 tgcaacattg ccaactgtgc aacaaaattt agggaaaatg gaaacgctat tgttatgtgc
     7561 gagacaattt ttatggagta cagcaaaagg gtatcaacaa tataaagatg acagtcagat
     7621 aagaaatcca acaagtgcga gtaaagtgat ggtaatgaat caagggcttg aagtgattga
     7681 tttagcgatg agaatagttg gtgctaaaag cttagaaatg aatcgaccat tacaacgtta
     7741 ctatcgtgac atgcgtgcag gattacacaa tccacctatg gaagatgcag catatacaaa
     7801 tattgctaag agtattacag atacatttta aattttaaaa ggtaaatcga tcgttgattg
     7861 gcataaagag atgaaatttg acgttcggat ttaccctttt tttgtgggga tttataggga
     7921 tgttaagata ttttgttaaa ttttttgcga aaataaaaaa taaataacac tagctattgt
     7981 aaatgtatat gcaatcttgt ataatttttg aatgattgat aatcattttc aataggagga
     8041 aattatgaaa aaactattat taccattaat aattatgtta ttagtgttag ctgcgtgtgg
     8101 gaaccaaggt gaaaaaaata acaaagctga aactaaatct tataaaatgg acgatggcaa
     8161 aacggtagat attccgaaag accctaaacg cattgcagta gttgcgccaa catatgctgg
     8221 tggacttaaa aaattaggtg caaacattgt agctgtaaat caacaagtcg atcaaagcaa
     8281 agtattaaaa gataaattta aaggtgttac aaaaattggt gatggcgatg tagaaaaagt
     8341 tgctaaagaa aagccagatt taattattgt atactctact gacaaagata ttaaaaaata
     8401 tcaaaaagta gcaccaacag tagttgttga ctataataag cataaatatt tagaacaaca
     8461 agaaatgtta gggaaaattg ttggtaaaga agataaagta aaagcttgga agaaagattg
     8521 ggaagaaaca actgctaaag acggtaaaga aattaaaaaa gcaattggac aagatgcaac
     8581 agtgtcattg tttgatgaat ttgataaaaa attatacact tacggcgata actggggtcg
     8641 tggtggagaa gtattatatc aagcatttgg tttgaaaatg caaccagaac aacaaaagtt
     8701 aactgcaaaa gcaggttggg ctgaagtgaa acaagaagaa attgaaaaat atgctggtga
     8761 ttacattgtg agtacaagtg aaggtaaacc tacaccagga tacgaatcaa caaacatgtg
     8821 gaagaatttg aaagctacta aagaaggaca tattgttaaa gttgatgctg gtacatactg
     8881 gtacaacgat ccttatacat tagatttcat gcgtaaagat ttaaaagaaa aattaattaa
     8941 agctgcaaaa taattcagct atataagtta gtgaaatgag agtctgaaac atatcaatct
     9001 ttt
//
LOCUS       DAMQWL010000096         8944 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.097, whole genome shotgun sequence.
ACCESSION   DAMQWL010000096 DAMQWL010000000
VERSION     DAMQWL010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 8944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8944
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.097"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(134..1144)
                     /locus_tag="PF788_002084"
     CDS             complement(134..1144)
                     /locus_tag="PF788_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HDG6304338.1"
                     /translation="MTSLKERDYFFDNARAILILLVVFGHMLQPYTSGDKYLSALYLV
                     IYSFHMPTFLFISGYFAKNIDKPYYLEKISKRLIVPYMIFFAFFSIYYFLTGKSDELQ
                     LDPFNPVFALWFLITLFFFHVILVIVRRFNPYKVLSVSIIISIGAGFSDNIDSYLSIS
                     RTIVFFPIFYLGYIFTKKHTAIFKNKKLIPVSIITFILFFIVYVIHPINADWLLGSSP
                     YTSLENEGQSIFSPFKRLILYGIILIAMTAFLNLMSTKKKLYTYIGSRTLYVYLLHGL
                     IIGIVRGFEWYPFDNPISLMTYLYLISISVIIVYVLSTNFVCKWTNPIINLQRPSQFK
                     DS"
     gene            1297..1716
                     /locus_tag="PF788_002085"
     CDS             1297..1716
                     /locus_tag="PF788_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDG6304339.1"
                     /translation="MYKQLEKLITLTNNDLNLVNRRFGQRTDIKSEQLELLRILFNYD
                     RLSQYDLTMKISREQSIVSRWIKKLVLKGYITSQQSSEDLRCKELILTDQARTLISQI
                     NNARCELIEARCQCLSEVELDNLNQLLDKLNQRRISL"
     gene            1743..1853
                     /locus_tag="PF788_002086"
     CDS             1743..1853
                     /locus_tag="PF788_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304340.1"
                     /translation="MSLCTQQKLNHELQAKVAVIVKIDGKQSPLFLLVYV"
     gene            complement(1923..5693)
                     /locus_tag="PF788_002087"
     CDS             complement(1923..5693)
                     /locus_tag="PF788_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HDG6304341.1"
                     /translation="MAKKFNYKLPSMVALTLVGSAVTAHQVQAAETTQDQTTNKNVLD
                     SNKVKATTEQAKAEVKNPTQNISGTQVYQDPAIVQPKTANNKTGNAQVSQKVDTAQVN
                     GDTRANQSATTNNTQPVAKSTSTTAPKTNTNVTNAGYSLVDDEDDNSENQINPELIKS
                     AAKPAALETQYKTAAPKAATTSAPKAKTEATPKVTTFSASAQPRSVAATPKTSLPKYK
                     PQVNSSINDYIRKNNLKAPKIEEDYTSYFPKYAYRNGVGRPEGIVVHDTANDRSTING
                     EISYMKNNYQNAFVHAFVDGDRIIETAPTDYLSWGVGAVGNPRFINVEIVHTHDYASF
                     ARSMNNYADYAATQLQYYGLKPDSAEYDGNGTVWTHYAVSKYLGGTDHADPHGYLRSH
                     NYSYDQLYDLINEKYLIKMGKVAPWGTQSTTTPTTPSKPTTPSKPSTGKLTVAANNGV
                     AQIKPTNSGLYTTVYDKTGKATNEVQKTFAVSKTATLGNQKFYLVQDYNSGNKFGWVK
                     EGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGNQTFKASKQQQI
                     DKSIYLYGSVNGKSGWVSKAYLVDTAKPTPTPTPKPSTPTTNNKLTVSSLNGVAQINA
                     KNNGLFTTVYDKTGKPTKEVQKTFAVTKEASLGGNKFYLVKDYNSPTLIGWVKQGDVI
                     YNNAKSPVNVMQTYTVKPGTKLYSVPWGTYKQEAGAVSGTGNQTFKATKQQQIDKSIY
                     LFGTVNGKSGWVSKAYLAVPAAPKKAVAQPKTAVKAYTVTKPQTTQTVSKIAQVKPNN
                     TGIRASVYEKTAKNGAKYADRTFYVTKERAHGNETYVLLNNTSHNIPLGWFNVKDLNV
                     QNLGKEVKTTQKYTVNKSNNGLSMVPWGTKNQVILTGNNIAQGTFNATKQVSVGKDVY
                     LYGTINNRTGWVNAKDLTAPTAVKPTTSAAKDYNYTYVIKNGNGYYYVTPNSDTAKYS
                     LKAFNEQPFAVVKEQVINGQTWYYGKLSNGKLAWIKSTDLAKELIKYNQTGMTLNQVA
                     QIQAGLQYKPQVQRVPGKWTDANFNDVKHAMDTKRLAQDPALKYQFLRLDQPQNISID
                     KINQFLKGKGVLENQGAAFNKAAQMYGINEVYLISHALLETGNGTSQLAKGADVVNNK
                     VVTNSNTKYHNVFGIAAYDNDPLREGIKYAKQAGWDTVSKAIVGGAKFIGNSYVKAGQ
                     NTLYKMRWNPAHPGTHQYATDVDWANINAKIIKGYYDKIGEVGKYFDIPQYK"
     gene            complement(5921..6355)
                     /locus_tag="PF788_002088"
     CDS             complement(5921..6355)
                     /locus_tag="PF788_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6304342.1"
                     /translation="MFSKVNNQKMLEDCFYIRKKVFVEEQGVPEESEIDEYESESIHL
                     IGYDNGQPVATARIRPINETTVKIERVAVMKSHRGQGMGRMLMQAVESLAKDEGFYVA
                     TMNAQCHAIPFYESLNFKMRGNIFLEEGIEHIEMTKKLTSLN"
     gene            complement(6510..6980)
                     /locus_tag="PF788_002089"
     CDS             complement(6510..6980)
                     /locus_tag="PF788_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499548.1"
                     /note="Essential protein for resistance to osmotic stress
                     from salt; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotic stress response protein"
                     /protein_id="HDG6304343.1"
                     /translation="MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHR
                     ENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMK
                     SLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL"
     gene            complement(7028..8245)
                     /locus_tag="PF788_002090"
     CDS             complement(7028..8245)
                     /locus_tag="PF788_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenyl-teichoic acid--peptidoglycan
                     teichoic acid transferase"
                     /protein_id="HDG6304344.1"
                     /translation="MNKFLKYFLILLALVLIVVPIVFATLLFKTSQDAFESSQDSKNA
                     NRQSNLRDNKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQI
                     RMLSIPRDTISYIPKVGYYDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFV
                     EAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRG
                     QRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVEIK
                     TAQLKGKDDMLNGIYYYHPSVESIQKYANLLRKDLELSPINDKNDFLDQRVINHYGSL
                     IPLTPLDNSLLRKEQNDTTDKDKTSNENSDSTNNSDSSNQQQPATDQNSNQNQGGTQQ
                     APQASNNQNGVVN"
     gene            8696..>8944
                     /locus_tag="PF788_002091"
     CDS             8696..>8944
                     /locus_tag="PF788_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methicillin resistance protein FmtA"
                     /protein_id="HDG6304345.1"
                     /translation="MKFNKVKLVIHACVLLFIIISIALIFHRLQTKTHSIDPIHKETK
                     LSDNEKYLVDRNKEKVAPSKLKEVYNSKDPKYKKIDKYL"
BASE COUNT         2821 a         1369 c         1452 g         3302 t
ORIGIN      
        1 catactttta aagcaaaaaa gggtaaatta cttaagcttt atttgaaaaa cgaaaaatgt
       61 ctaaatacac tgtagtaact acttttcaaa atgaataaag tggttacagt taatgtactt
      121 agacagtata aaattatgaa tctttaaact gtgatggtct ttgtaaatta attattggat
      181 ttgtccattt acaaacaaag tttgtagata atacatatac gatgattaca gatatactta
      241 ttaaataaag ataagtcatt aatgatatag gattatcgaa tgggtaccat tcaaatcctc
      301 taacaatgcc aataattaaa ccatgtaata aatatacgta tagcgtacga ctaccaatat
      361 aagtatataa ttttttcttt gttgacatta aatttagaaa cgcagtcatt gcgattaata
      421 taattccata taatataagt cgtttaaaag gactgaatat actctgtcct tcattttcaa
      481 gtgaagtata tggtgaactt cccaataacc aatctgcatt gataggatga atcacgtaaa
      541 cgataaaaaa caaaataaag gtaatgatag atactggtat tagtttttta tttttaaaaa
      601 tagccgtatg ttttttggtg aaaatgtaac ctagataaaa tattgggaaa aatacgattg
      661 tccttgaaat gcttaagtag ctatcgatgt tatctgaaaa acctgctcca atagatataa
      721 taattgaaac tgatagcact ttatatggat taaatcttct aactattact aaaatgacat
      781 gaaagaaaaa tagcgtgatc aaaaaccata acgcaaatac tgggttaaaa ggatcaagtt
      841 gtaattcgtc acttttacct gttaagaaat aataaattga aaagaatgca aaaaatatca
      901 tataaggtac tatcaaacgt tttgaaattt tttctaaata gtatggttta tcaatatttt
      961 tcgcgaaata accagatata aacaaaaatg ttggcatatg gaaactataa ataactaggt
     1021 ataatgctga taaatattta tcgccactag tgtagggttg taacatatgt ccaaatacga
     1081 ctaataatat taaaattgct cttgcgttgt caaaaaaata atctctctct tttaatgaag
     1141 tcatatttta tctcctttat gtccataaga ctcttactaa tttattatat tttgtattag
     1201 ttatgcaaca aatttgtcta ttgtgtcgaa tagtattgta aaaattataa aaaaagcata
     1261 taatattata aataatatgt agtggagtag aacaacatgt ataaacaact tgaaaaactt
     1321 attacactga ctaacaatga cttaaactta gtgaatagaa gatttggaca acgcacggat
     1381 atcaaatctg aacagctaga acttctccgt attttattta attacgatcg cttatcacag
     1441 tatgatttga cgatgaagat tagcagggaa caatctatag tttcaaggtg gattaagaaa
     1501 ttagttttga aagggtacat cacaagtcaa caatctagcg aagatttaag atgtaaagaa
     1561 ttaattttga ctgatcaagc acgtacatta atttcacaaa taaataatgc acgttgcgaa
     1621 ttgattgaag caagatgtca atgtttatcg gaagtcgaat tagacaattt aaatcaatta
     1681 cttgataagt taaatcaacg acgcatatcg ttgtaacacg acaatagcaa acacataatt
     1741 tagtgtcgtt gtgcacacaa caaaaattga atcatgaatt acaagcaaaa gtagcggtga
     1801 ttgttaaaat tgatggtaaa caatcaccgc tatttttgct tgtgtatgta taaaaaaggg
     1861 atcaaaggtc atcccccatg attgatagtg ggggatgact tttgatccta tgttcatgtt
     1921 gcttatttat attgtgggat gtcgaagtat ttgccgactt cgccaatttt atcatagtag
     1981 cctttgatga ttttagcatt gatgttagcc caatctacat ctgtagcata ttggtgtgtt
     2041 cctggatgtg caggattcca tctcattttg taaagtgtat tttgaccagc ttttacatat
     2101 gagttgccga tgaatttagc accaccaacg attgcttttg atactgtgtc ccaaccagct
     2161 tgtttagcat atttaatacc ttcacgtaaa ggatcgttat catatgcagc aataccaaat
     2221 acgttatggt atttcgtgtt tgagttagtt acaactttgt tgttcactac atctgcacct
     2281 ttcgctaatt gagaagtacc gttacctgtt tctaataggg catgtgagat aagataaact
     2341 tcattaatgc catacatttg agcagctttg ttaaatgcag caccttggtt ttctaataca
     2401 cctttacctt ttaagaattg attaatttta tcaatagaaa tattttgtgg ttggtctaag
     2461 cgtaagaatt gatattttaa tgctggatct tgagctaaac gcttcgtatc cattgcatgc
     2521 ttaacatcat taaagttagc atctgtccac ttacctggta cacgttgtac ttgtggttta
     2581 tattgtaaac cagcttgtat ttgagcaact tggtttaatg tcatacctgt ttgattatac
     2641 ttaattaatt ctttagctaa atcagttgat ttaatccatg ctaatttacc gttagataat
     2701 ttaccatagt accaagtttg tccattaatg acttgttctt taacaactgc gaatggttgt
     2761 tcattaaatg cttttaatga gtatttagct gtatcagaat ttggtgttac atagtaataa
     2821 ccattaccat ttttaattac ataagtgtag ttataatctt tggcagctga tgtagttggt
     2881 ttcacagcgg ttggtgcagt taaatctttt gcatttaccc aaccagtgcg gttattaata
     2941 gtaccgtata aataaacatc tttgcctaca gatacttgtt tcgttgcatt aaatgtacct
     3001 tgagcaatgt tattgcctgt taaaatgact tggtttttag taccccaagg aaccattgat
     3061 aagccgttat ttgatttatt aacagtatat ttttgagtcg ttttaacttc tttgcctaag
     3121 ttttgaacat ttaagtcttt tacattgaac caacctaatg ggatgttatg gcttgtattg
     3181 tttaataata catacgtttc attaccatga gcacgctctt ttgttacata gaacgtacgg
     3241 tctgcatatt tcgcaccgtt tttcgctgtt ttttcataaa cagaagcacg aataccagtg
     3301 ttgtttggtt taacttgagc aatcttgcta actgtttgag tcgtttgtgg tttagtaaca
     3361 gtataagctt ttacagctgt ttttggttgt gctactgctt ttttaggtgc agcaggtaca
     3421 gctaaatatg ctttacttac ccaaccagat ttaccattta cagttccaaa taaatagata
     3481 gatttatcaa tttgttgttg cttagtcgct ttaaaagttt ggttacctgt accagaaact
     3541 gcaccagctt cttgtttata agtgccccaa ggtactgaat ataatttagt gcctggtttt
     3601 actgtatatg tttgcattac atttacaggt gattttgcat tgttataaat aacgtcacct
     3661 tgtttaaccc aaccaattaa agttggacta ttgtaatctt taactaagta gaatttgttt
     3721 ccacctaaac ttgcttcttt tgttacagca aatgtttttt gaacttcttt cgttggctta
     3781 ccagttttgt cataaactgt agtgaataag ccattgtttt tagcattaat ttgagcaaca
     3841 ccgtttaatg atgaaactgt taatttatta tttgttgtag gtgttgatgg cttaggtgtt
     3901 ggtgtaggcg taggtttagc agtatcaact aaatatgctt tacttaccca accagattta
     3961 ccattcacag agccatataa ataaattgat ttatcaattt gttgttgctt tgaagcctta
     4021 aatgtttggt ttccagagcc agacacacta ccagcaactt gtttagatgt accccaaggt
     4081 actgtataaa gtttcgtacc aggtttgatt gaatatgatt gatttacatt tacaggtgat
     4141 ttagctgtgt tgtaaaccac atcgccttct ttaacccaac caaatttatt accagaattg
     4201 taatcttgaa caagatagaa tttttgatta cctaatgtag ctgttttaga tacagcaaat
     4261 gttttttgaa cttcattagt tgctttacca gttttgtcgt atacagtagt atataaacca
     4321 ctatttgttg gtttgatttg tgcgacacca ttgtttgcag caactgttaa tttaccagtt
     4381 gatggtttcg acggtgttgt tggttttgat ggtgtagtag gggtagttgt agattgcgta
     4441 ccccatggcg ccactttacc catttttatt aaatattttt cattaattaa gtcatataat
     4501 tgatcataac tataattatg acttcttaaa tatccatgtg gatcggcatg gtcagtacca
     4561 cctaaatatt tacttacagc gtagtgagtc catactgtac catttccatc atactcagca
     4621 ctgtctggtt ttaaaccata atattgtaat tgtgtagctg catagtcagc atagttattc
     4681 attgaacgtg caaatgaagc atagtcgtgt gtgtgtacga tttcaacatt gatgaatcta
     4741 gggttaccga ctgcaccgac accccaagat aagtaatccg ttggtgctgt ttcgattata
     4801 cgatccccat caacaaatgc atgtacgaat gcgttttgat agttattttt catataacta
     4861 atttcaccat ttatcgtcga acgatcatta gctgtatcat gaactacgat accttcagga
     4921 cgacctacgc cgttacggta tgcgtattta gggaagtaag atgtataatc ttcttcaatt
     4981 ttaggtgctt ttaagttatt tttacgaatg taatcgttaa ttgaagagtt tacttgtggt
     5041 ttatattttg gcaaactcgt ttttggtgtt gcagcaactg atcttggttg tgctgaagcg
     5101 ctaaaagtag ttactttagg tgtcgcttca gttttagctt taggtgctga tgtagttgca
     5161 gctttaggtg ctgcggtttt atattgcgtt tcaagagctg caggtttagc agctgattta
     5221 attaattctg gattaatttg attttctgaa ttatcatctt catcatcaac taaactataa
     5281 ccagcatttg taacattagt gttagtttta ggtgctgtag tgcttgttga ctttgcaaca
     5341 ggctgcgtat tatttgtagt cgctgattga ttagcacgag tgtcaccatt tacttgtgca
     5401 gtatcaactt tttgacttac ttgagcattg cctgttttgt tatttgctgt ttttggttgg
     5461 acaatagcag ggtcttgata tacttgagtg ccagaaatgt tttgcgttgg attttttacc
     5521 tcagcttttg cttgttcagt agttgcttta actttattac tatctaaaac gtttttatta
     5581 gtagtttgat cttgtgtcgt ctcagctgct tgaacttgat gtgcagtgac tgctgaacct
     5641 acaagcgtta atgcaaccat tgatggtagt ttgtaattga attttttcgc cattctattt
     5701 attactccta acatttatta attattacta acattatagt acctgtttta tatacctgtg
     5761 cgtatttaac caatttgtaa tatactctta atttacattt tcactgtaaa aaaatgaaaa
     5821 aaattttgaa tctcaatggt gacgtgacaa atcaaataga attgatgtca atttaagaat
     5881 tggtttatta caaatgtttc taaaatagat acaacttttt ttaattaagc gaggttaact
     5941 tttttgtcat ttcaatatgc tcgatgcctt cctcaagaaa tatattacct ctcattttaa
     6001 agtttaaact ttcataaaat gggatagcat gacattgggc attcatagta gctacgtaaa
     6061 aaccttcatc tttagctaat gattctacag cttgcataag cattctaccc attccttgtc
     6121 cacgatgtga tttcatcaca gctactcgtt ctattttgac agttgtttca ttaatagggc
     6181 gtattcgagc agtggcaact ggctgtccat tatcatatcc aatgaggtga atagattcag
     6241 attcatattc atcaatttca ctttcctcag ggacgccttg ttcttctaca aacactttct
     6301 ttcttatata gaagcaatct tctaacatct tttgattgtt tacttttgaa aacataaaat
     6361 tcctccacat cctaacaaaa tcatttacat ttaatttact aataataaca tagaataacg
     6421 attgttattt tcctcaaaaa taattagaca taaaaaagct ataaagatga ttgttgtgaa
     6481 tcatctttat agctaattaa ttattaatgt tatagtgctt cttttctaat aattgctgta
     6541 tattgccaaa agattcgcat ttgagcaata ttccaattat tcattcccat tgtaaatcct
     6601 gaaggcttaa atatattcac atcagttact tctaaagctg ctgcaactaa atattgtaat
     6661 ggaatgctaa gtgatttcat tgtttcggta atgccatttt catcatatac ccatgaaaat
     6721 ggtaactctg attcgaaaac atcaacacta ttgaaaattt caggtagggc taaaatataa
     6781 catgcaccat ctacaatagg attgtcgata ctatttttgt aataaattag gagtgcttca
     6841 tagttttctc gatgctcatg attgacgtaa aaaaattcac ttctaaaatg agccatatct
     6901 tggctatgaa tgatttgttg ttctaacata ttaaacatgc catttatatt tgcaatcttt
     6961 tcgtatgttt ttctactcat gtatgatgct cctttcataa atagtaaatg ttaatcgtca
     7021 tataatatta atttacaaca ccattttggt tatttgaagc ttgtggcgct tgttgtgtgc
     7081 caccttgatt ttgatttgag ttttgatctg tagcaggttg ttgttgattg ctggaatcac
     7141 tgttattagt tgaatcactg ttctcgttag atgtcttatc tttatctgtc gtatcatttt
     7201 gttcttttct caataaacta ttatctaaag gcgttaatgg tattaatgaa ccataatgat
     7261 taatgacacg ttgatctaag aaatcatttt tatcattaat aggtgataat tctaagtctt
     7321 tacgaagtaa gtttgcatat ttttgaatgc tttcaacact tggatgataa tagtaaatac
     7381 catttaacat atcatcttta ccttttaatt gcgcagtttt aatttcaaca tcatttgtta
     7441 agtacatttt tgctaaagct ttaatttcag agttagttaa attatgcttt gcatttttac
     7501 ctacaatttg aatcacgtta tcaagtttat caatagaatc aacttcctgt gctttttgga
     7561 ataaaatctt aattaattcc atttgacgtt gtccacgttt taagtctgaa tcatgatgtc
     7621 tagttctagc aactgctaaa gcctcatcac catttaattt ttggtaccct tttttaattt
     7681 taatcttacc agtatcatct gtgttaggtt catttaagtc gtatggcaca tcatagtata
     7741 tgccaccaag ctcatttaca gcctcgacaa atgctttcat attgactctc acataataat
     7801 caacaggtac attcatggta gcttctaccg aatccattgc ggcaattgga ccaccatatg
     7861 catgtgcatg ggtaatctta tcgtaatagc caactttagg aatgtagctg atagtatcac
     7921 gtggaatact aagcattcta atttgatgtt ttgattgatt aaaagtagtt aaaatcatag
     7981 cgtctgatct agagtgttca gcatcctgtc ctttttttct tcttccatcg ttatcatcga
     8041 tacctaagaa aagaatagag ataggttgtt cttcgggatt gactttatta tctcttaagt
     8101 tggattgacg attagcattt ttgctgtctt gagaagattc gaatgcatct tgggacgttt
     8161 taaaaagtaa cgtagcgaag actattggaa caacaatgag aaccaatgct agaaggatca
     8221 aaaagtattt taaaaattta ttcatgattg atgctcctat attaaatttt tgttaaatca
     8281 taatcataat tttaaaatat aattagttga acgatattta tacaacttca ttactaatac
     8341 attatagcct taaattgtag tactttatag taaaaaatac aaatgttatg tcaaagttcc
     8401 ttgtaatttg aatgttttgt taaaatcaaa aagcattttt aaaaatataa tgcgacttta
     8461 gtatgatgtc ttaaaaaatt taaaggcgta atataaattc gagtgattta tacaaagtga
     8521 taaggtataa ttaattttgt tgtatagata acatattaga aaaacttatt actatgtagc
     8581 gtaaagcata aatgaatgat aagttaattt ttgtaagttg tattattagg catctaggtt
     8641 caaattttta acgatttaaa tatataaaat gaatacattg tgaggcaatt atcaaatgaa
     8701 atttaataaa gtaaaactag ttatacatgc gtgtgtacta ttatttatca ttatttctat
     8761 agcgttaatt tttcatcgat tacagacgaa gacacattct atagacccaa tacataagga
     8821 aacaaaatta tcagacaatg aaaaatattt agtggatcgt aataaggaaa aggttgcgcc
     8881 gtctaaacta aaagaggtat ataatagcaa ggatcctaaa tataagaaaa ttgacaagta
     8941 ttta
//
LOCUS       DAMQWL010000097         8794 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.098, whole genome shotgun sequence.
ACCESSION   DAMQWL010000097 DAMQWL010000000
VERSION     DAMQWL010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 8794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8794
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.098"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            41..982
                     /locus_tag="PF788_002092"
     CDS             41..982
                     /locus_tag="PF788_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDG6304346.1"
                     /translation="MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHW
                     ADDDQDTSDLAYEASLKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGK
                     VASMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKITDLTDRSTAVLFGDG
                     AGAVIIGEVSDGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDAS
                     TRVVEKANLTSDDIDLFIPHQANIRIMESARERLGISKDKMSVSVNKYGNTSAASIPL
                     SIDQELKNGKIKDDDTIVLVGFGGGLTWGAMTIKWGK"
     gene            994..2238
                     /gene="fabF"
                     /locus_tag="PF788_002093"
     CDS             994..2238
                     /gene="fabF"
                     /locus_tag="PF788_002093"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HDG6304347.1"
                     /translation="MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDT
                     EPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRI
                     GVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGA
                     TVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIET
                     ACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE
                     GEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVNS
                     TKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVPNEAQDLDITY
                     AMSNSLGFGGHNAVLVFKKFEA"
     gene            complement(2293..2664)
                     /locus_tag="PF788_002094"
     CDS             complement(2293..2664)
                     /locus_tag="PF788_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3899 domain-containing protein"
                     /protein_id="HDG6304348.1"
                     /translation="MLKKWLGMALITPILTFIIWLFNSHTIITYLNILFYVSLIIFIS
                     IFLILLVQEGIFDATSYGFRRLKYQMSSSKKKKSISDDPFFNPQEVKKEHYFVSTWII
                     PLLLINILYFIMTIVLSLILV"
     gene            2907..3833
                     /locus_tag="PF788_002095"
     CDS             2907..3833
                     /locus_tag="PF788_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304349.1"
                     /translation="MGKYIFKRFIYMLISLFIIITITFFLMKLMPGSPFNDAKLNAEQ
                     KEILNEKYGLNDPVATQYLHYLKNVVTGDFGNSFQYHNQPVWDLIKPRLLPSFEMGLT
                     AMFIGVILGLILGVAAATKQNSWVDYTTTVISVIAVSVPSFVLAVLLQYVFAVKLRWF
                     PVAGWEGFSTAVLPSLALSAAVLATVARYIRAEMIEVLSSDYILLARAKGNSTMRVLF
                     GHALRNALIPIITIIVPMLASILTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMAIT
                     LLFSTLFIVSIFIVDILYGVIDPRIRVQGGKK"
     gene            3833..4903
                     /locus_tag="PF788_002096"
     CDS             3833..4903
                     /locus_tag="PF788_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304350.1"
                     /translation="MAENKNNLSINDDHSNAAMTHTSDAIASSDFIIRELDLNQEPEM
                     QRESKNFWQDAWAQLKRNKLAVVGMIGLIIIVIFAFIGPVINKHDYAEQNVEHRNLPA
                     KIPVLDKVPFLPFDGKDADGKDAYKAANAKENYWFGTDQLGRDLWTRTWKGAQISLFI
                     GVVAAMLDIFIGVVYGAISGFFGGRVDTIMQRILEVIASIPNLIVVILFVLIFEPSIW
                     TIILAMSITGWLGMSRVVRGEFLKLKNQEFVMASKTLGASKFKLIFKHILPNTLGAIV
                     VTSMFTVPSAIFFEAFLSFIGIGVPAPQTSLGSLVNDGRAMLLIYPHELFIPAMILSL
                     LILFFYLFSDGLRDAFDPKMRK"
     gene            4920..6002
                     /locus_tag="PF788_002097"
     CDS             4920..6002
                     /locus_tag="PF788_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6304351.1"
                     /translation="MTERILEVNDLHVSFDITAGEVQAVRGVDFYLNKGETLAIVGES
                     GSGKSVTTKAITKLFQGDTGRIKKGEILFLGEDLAKKPENELIKLRGKDISMIFQDPM
                     TSLNPTMQIGKQVMEPLIKHKNYSKAQAKKRALEILNLVGLPNAEKRFKAYPHQFSGG
                     QRQRIVIATALACEPKVLIADEPTTALDVTMQAQILDLMKELQQKIDTAIIFITHDLG
                     VVANIADRVAVMYGGQMVETGDVNEIFYDPKHPYTWGLLSSMPDLSTTNDTPLLAIPG
                     APPDLLHPPKGDAFARRSQYALDIDFKVEPPWFKVSPTHFVKSWLLDARAPKVELPEL
                     VKQRMKPMPNNYEKPLKVERVSFNEK"
     gene            5992..6933
                     /locus_tag="PF788_002098"
     CDS             5992..6933
                     /locus_tag="PF788_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDG6304352.1"
                     /translation="MKNDEVLLSIKNLKQYFNAGKKNEVRAIENISFDIYKGETLGLV
                     GESGCGKSTTGKSIIKLNDITSGEILYEGIDIQKIRKRKDLLKFNKKIQMIFQDPYAS
                     LNPRLKVMDIVAEGIDIHHLATDKRDRKKRVYDLLETVGLSKEHANRYPHEFSGGQRQ
                     RIGIARALAVEPEFIIADEPISALDVSIQAQVVNLLLKLQRERGITFLFIAHDLSMVK
                     YISDRIAVMHFGKIVEIGPAEEIYQNPLHDYTKSLLSAIPQPDPESERSRKRFSYIDD
                     EANNHLRQLHEIRPNHFVFSTEEEAAQLRENKLVTQN"
     gene            6952..8607
                     /locus_tag="PF788_002099"
     CDS             6952..8607
                     /locus_tag="PF788_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6304353.1"
                     /translation="MTRKFRTLILILIATIALSGCANDDGIYSDKGQVFRKILSSDLT
                     SLDTSLITDEISSEVTAQTFEGLYTLGKGDKPVLGVAKAFPEKSKDGKTLKVKLRSDA
                     KWSNGDKVTAQDFVYAWRKTVDPKTGSEFAYIMGDIKNASDISTGKKPVEQLGIKALN
                     DETLQIELEKPVPYINQLLALNTFAPQNEKVAKKYGKNYGTAADRAVYNGPFKVDDWK
                     QEDKTLLSKNQYYWDKKNVKLDKVNYKVIKDLQAGASLYDTESVDDAVITADQVNKYK
                     DNKGLNFVLTTGTFFVKMNEKQYPDFKNKNLRLAIAQAIDKKGYVDSVKNNGSIPSDT
                     LTAKGIAKAPNGKDYASTMNSPLKYNPKEARAHWDKAKKELGKNEVTFSMNTEDTPDA
                     KISAEYIKSQVEKNLPGVTLKIKQLPFKQRVSLELSNNFEASLSGWSADYPDPMAYLE
                     TMTTGSAQNNTDWGNKEYDQLLKVARTKLALQPNERYENLKKAEEMFLGDAPVAPIYQ
                     KGVAHLTNPQVKGLIYHKFGPNNSLKHVYIDKSIDKETGKKKK"
BASE COUNT         3146 a         1267 c         1703 g         2678 t
ORIGIN      
        1 atacctggta ttaaaaattt tattaagaag gtgttcaact atgaacgtgg gtattaaagg
       61 ttttggtgca tatgcgccag aaaagattat tgacaatgcc tattttgagc aatttttaga
      121 tacatctgat gaatggattt ctaagatgac tggaattaaa gaaagacatt gggcagatga
      181 tgatcaagat acttcagatt tagcatatga agcaagttta aaagcaatcg ctgacgctgg
      241 tattcagccc gaagatatag atatgataat tgttgccaca gcaactggag atatgccatt
      301 tccaactgtc gcaaatatgt tgcaagaacg tttagggacg ggcaaagttg cctctatgga
      361 tcaacttgca gcatgttctg gatttatgta ttcaatgatt acagctaaac aatatgttca
      421 atctggagat tatcataaca ttttagttgt cggtgcagat aaattatcta aaataacaga
      481 tttaactgac cgttctactg cagttctatt tggagatggt gcaggtgcgg ttatcatcgg
      541 tgaagtttca gatggcagag gtattataag ttatgaaatg ggttctgatg gtacaggtgg
      601 taaacattta tatttagata aagatactgg taaactgaaa atgaatggtc gagaagtatt
      661 taaatttgct gttagaatta tgggtgatgc atcaacacgt gtagttgaaa aagcgaattt
      721 aacatcagat gatatagatt tatttattcc tcatcaagct aatattagaa ttatggaatc
      781 agctagagaa cgcttaggta tttcaaaaga caaaatgagt gtttctgtaa ataaatatgg
      841 aaatacttca gctgcgtcaa tacctttaag tatcgatcaa gaattaaaaa atggtaaaat
      901 caaagatgat gatacaattg ttcttgtcgg attcggtggc ggcctaactt ggggcgcaat
      961 gacaataaaa tggggaaaat aggaggataa cgaatgagtc aaaataaaag agtagttatt
     1021 acaggtatgg gagccctttc tccaatcggt aatgatgtca aaacaacatg ggagaatgct
     1081 ctaaaaggcg taaatggtat cgataaaatt acacgtatcg atactgaacc ttatagcgtt
     1141 cacttagcag gagaacttaa aaactttaat attgaagatc atatcgacaa aaaagaagcg
     1201 cgtcgtatgg atagatttac tcaatatgca attgtagcag ctagagaggc tgttaaagat
     1261 gcgcaattag atatcaatga aaatactgca gatcgaatcg gtgtatggat tggttctggt
     1321 atcggtggta tggaaacatt tgaaattgca cataaacaat taatggataa aggcccaaga
     1381 cgtgtgagtc catttttcgt accaatgtta attcctgata tggcaactgg gcaagtatca
     1441 attgacttag gtgcaaaagg accaaatggt gcaacagtta cagcatgtgc aacaggtaca
     1501 aattcaatcg gagaagcatt taaaattgtg caacgcggtg atgcagatgc aatgattact
     1561 ggtggtacag aagcaccaat tactcatatg gcaattgctg gtttcagtgc aagtcgagcg
     1621 ctttctacaa atgatgacat tgaaacagca tgtcgtccat tccaagaagg tagagatggt
     1681 tttgttatgg gtgaaggtgc tggtatttta gtaattgaat ctttagaatc agcacaagct
     1741 cgaggtgcca atatttatgc tgagatagtt ggctatggta ctacaggtga tgcttatcat
     1801 attacagcgc cagctccaga aggtgaaggt ggttctagag caatgcaagc agctatggat
     1861 gatgctggta ttgaacctaa agatgtacaa tacttaaatg cccatggtac aagtactcct
     1921 gttggtgact taaatgaagt taaagctatt aaaaatacat ttggtgaagc agctaaacac
     1981 ttaaaagtta actcaacaaa atcaatgact ggtcacttac ttggtgcaac aggtggaatt
     2041 gaagcaatct tctcagcgct ttcaattaaa gactctaaag tcgcaccgac aattcatgcg
     2101 gtaacaccag atccagaatg tgatttggat attgttccaa atgaagcgca agaccttgat
     2161 attacttatg caatgagtaa tagcttagga ttcggtggac ataacgcagt attagtattc
     2221 aagaaatttg aagcataact ataaaaatct tcagtaacgt tgttttagtt actgaagatt
     2281 ttttcagttt ctttatacta agatgagcga cagcacaatc gtcataataa aatataaaat
     2341 atttattaat aataagggga ttatccatgt agaaacaaag taatgctctt tttttacctc
     2401 ttgtgggttg aaaaatggat catcagagat agacttcttc tttttcgaag atgacatttg
     2461 atactttaat cttctaaaac cataacttgt cgcatcaaaa atgccttctt gtacaagtaa
     2521 aatcaaaaat atgctaataa aaataattaa tgaaacataa aacaatatat ttaaatatgt
     2581 aatgatagta tggctattaa aaagccatat aataaacgtt aatattggcg ttattagtgc
     2641 cattccaagc cattttttca acatttgatc actcccactt atagaaaact cttacgcata
     2701 gtttacatta aaatcagaca ttgaggaatg attttttaat ttcttcagct ttattgaaat
     2761 tctaaaatca atcattcttc attagtttaa agcaaaaaaa tattgatata tagtaaatat
     2821 tgtatatata atattagtta agatttcaga aaattttgaa gggaatggaa atttagaaat
     2881 cggaatttgt tagaggaggg gattagatgg ggaaatatat tttcaaacga tttatttata
     2941 tgcttatttc tttatttatt attattacaa ttacattttt cttaatgaaa ttaatgccag
     3001 gttcgccatt taacgatgct aaattaaatg ctgaacaaaa agaaatttta aatgaaaaat
     3061 atggattaaa tgatcctgta gctacgcagt atttacatta tttaaaaaat gttgttacag
     3121 gcgattttgg taattcattc cagtatcata atcaacctgt gtgggatttg attaaaccga
     3181 gactactacc ttcttttgaa atgggtctta cagcaatgtt catcggtgtg atactgggac
     3241 ttattttagg tgttgcagca gctactaaac aaaattcttg ggttgactat acaactacag
     3301 ttatttcagt tattgcagta tctgtaccat cttttgtact tgctgtactt ttacaatatg
     3361 tatttgcagt taaattaaga tggttcccag tagctggatg ggaaggtttt tcgaccgcgg
     3421 tattaccgtc acttgcatta tctgcagctg ttttagcaac tgtcgccaga tacataagag
     3481 cagagatgat agaggtatta agttcagact atattttatt agcgagagct aaaggtaatt
     3541 cgacaatgcg tgtacttttt ggacatgcac ttagaaatgc tttaattcca attattacaa
     3601 ttatcgttcc catgttagca agtattttaa caggcacttt aacaattgaa aatatttttg
     3661 gagttcctgg attaggggat caattcgtac gttcaattac aacaaatgat ttctcagtaa
     3721 tcatggcaat cacactatta tttagcacac tgtttatcgt ttctattttt attgtagata
     3781 ttttgtacgg tgtgatagat ccacgaattc gtgttcaagg aggtaaaaaa taatggctga
     3841 aaataaaaac aatttgtcga ttaacgacga tcattctaat gcagctatga cgcatacctc
     3901 tgacgctatc gcatcatctg attttattat tagagaatta gatttgaatc aggaacctga
     3961 aatgcaacga gaaagcaaaa acttttggca agatgcttgg gctcagttaa aacgaaataa
     4021 gttagctgtt gtcggtatga taggtttaat tatcattgta atatttgctt ttatcggtcc
     4081 agttataaat aaacatgatt atgctgaaca aaatgtagaa catagaaatc ttccggcaaa
     4141 aatacctgta ttagacaaag ttccattttt accttttgat ggtaaagatg cagatggcaa
     4201 ggatgcttat aaagcagcaa atgctaaaga aaattattgg tttggtactg atcagttggg
     4261 tcgagattta tggacaagaa catggaaagg tgctcaaatt tcattgttta tcggtgttgt
     4321 tgcagcgatg ttagatattt ttattggtgt tgtatatggt gcgatttctg gattcttcgg
     4381 tggacgtgtc gatacgatta tgcaacgtat acttgaagtc atagcatcta ttccgaattt
     4441 aattgtcgta attttatttg tattaatttt tgaaccatcc atttggacaa ttatattggc
     4501 tatgtctatc acaggctggt taggcatgag cagagttgta cgtggagaat ttttaaaatt
     4561 aaaaaatcaa gagtttgtca tggcttcgaa aacattgggg gcttcaaaat tcaaattgat
     4621 atttaagcat attttaccta atacattagg tgctatcgtg gttacatcaa tgtttacagt
     4681 acctagtgct attttcttcg aagcattttt aagtttcatt ggtataggtg tacccgcacc
     4741 tcaaacatcg ttagggtcat tagtaaatga tgggcgcgca atgttattaa tttatccaca
     4801 tgaattattt ataccagcaa tgattttaag tttattaatt ctattctttt acttatttag
     4861 tgatggatta cgtgatgcat ttgatccgaa aatgcgtaaa taaaaagggg gcatagcata
     4921 tgactgaaag aatattagaa gtaaatgatt tgcatgtttc ctttgatatt acagcagggg
     4981 aagtgcaggc agtgagaggc gtagattttt atttgaacaa aggggaaaca ttggcaattg
     5041 ttggtgaatc aggttcaggt aaatctgtaa caacaaaagc aattacaaaa ttattccaag
     5101 gggacacagg aagaattaaa aagggagaaa ttttattttt aggggaagat ttagcaaaaa
     5161 aacctgaaaa tgagttgatt aaattacgtg gcaaagatat ttcaatgatc tttcaagatc
     5221 caatgacatc tttaaaccca acgatgcaaa ttggtaaaca agtcatggaa ccattaatta
     5281 agcacaaaaa ttatagtaaa gcacaagcta aaaagcgcgc attggaaata ctaaatcttg
     5341 taggtttacc aaatgcagaa aaaagattta aagcatatcc tcatcaattt tcaggtggac
     5401 aaaggcaaag aattgttatt gcaaccgcat tagcttgtga acctaaagtg ctcattgctg
     5461 atgaaccaac gactgcatta gacgtaacga tgcaggcaca aattttagat ttaatgaaag
     5521 aactacaaca aaaaatcgat acagcaatta tttttataac gcatgattta ggggttgttg
     5581 cgaatattgc tgatagagtg gcagttatgt atggtggtca aatggttgaa acaggagatg
     5641 ttaacgaaat attttatgat ccaaagcatc catatacatg gggattatta tcgtcaatgc
     5701 ctgatttatc aacaacaaat gacacaccat tactagcgat tcctggagcg ccacctgatt
     5761 tattacaccc acctaaaggt gatgcatttg cgagacgtag tcaatatgca ttagatattg
     5821 attttaaagt agaaccaccg tggtttaaag tttcaccgac acattttgtg aaatcttggt
     5881 tattagacgc acgtgcacca aaagttgaac tacccgagct ggtaaaacaa cgtatgaaac
     5941 cgatgcctaa taattatgaa aaaccactca aggtagaaag ggtgtcgttc aatgaaaaat
     6001 gatgaagtgc tattatctat taaaaattta aagcaatatt ttaacgcagg aaagaaaaac
     6061 gaagtgagag cgattgaaaa tatttcgttt gatatataca aaggggaaac attaggttta
     6121 gtaggagaat cggggtgtgg taaatctaca actggtaaat caattattaa acttaatgat
     6181 attacaagtg gagaaatttt gtatgagggt attgatatac aaaagattcg taaacgtaaa
     6241 gatttgctta aatttaataa aaagatacag atgatttttc aagacccata tgcgtcttta
     6301 aatcctaggt taaaagtaat ggatatagta gctgaaggta ttgatatcca tcatttagca
     6361 actgataagc gtgaccgaaa aaaacgtgtc tatgatttac ttgaaactgt tggattaagt
     6421 aaagaacatg ccaatcgcta tcctcatgaa ttttcaggtg gacaacgcca acgtattgga
     6481 attgcccgtg cattagccgt tgaaccagaa ttcattatcg cggacgaacc aatatcggca
     6541 ttggatgttt caatccaagc tcaagtagtt aatttattat taaaattaca acgtgaaaga
     6601 gggattacgt tcctatttat agctcatgat ctatcaatgg tgaagtatat ttcagatcgt
     6661 attgcagtca tgcattttgg gaaaatagtt gaaattggac cggcagaaga aatttatcaa
     6721 aatccattac acgattatac taagtcttta ttatcagcca ttccacaacc tgatcctgaa
     6781 tcagaacgca gtcgcaaacg atttagttat attgatgatg aagcaaataa tcatttaaga
     6841 caattacatg aaattagacc gaatcacttt gtctttagta ctgaagaaga agcggcacaa
     6901 ctacgagaaa ataaattggt gacacaaaat taaggggaag ggggaaatgc aatgacgaga
     6961 aaatttagaa cacttatttt aattttgatt gctacaattg cattaagtgg ttgtgctaat
     7021 gacgatggta tttattcaga taaaggtcaa gtattcagaa aaattttgtc atcagactta
     7081 acatcccttg atacatcatt aataacggat gaaatatctt ctgaagtgac tgcgcaaaca
     7141 ttcgaaggtt tatacacatt aggaaaaggt gacaaaccgg tgttaggtgt tgcgaaagct
     7201 tttcctgaaa agagtaaaga tggtaaaact ttaaaggtta aattaagaag cgatgctaaa
     7261 tggagcaatg gtgacaaagt gactgcacaa gactttgttt atgcttggag aaaaacagtt
     7321 gaccctaaaa caggttctga atttgcatac attatggggg acattaaaaa tgcgagtgat
     7381 attagtactg gtaagaaacc tgtagagcaa ttaggtatca aagcattaaa tgatgaaaca
     7441 ttacaaattg aattagaaaa gccggttcca tatattaatc aattattagc acttaatacc
     7501 tttgcacctc aaaatgaaaa agttgccaaa aaatatggta aaaattacgg tacggcagct
     7561 gatagagcgg tatacaatgg tccatttaaa gttgatgatt ggaaacaaga agataaaacc
     7621 ttactatcta aaaatcagta ttattgggat aaaaagaatg taaaattaga taaagtgaat
     7681 tataaagtta ttaaagactt acaagccggt gcatcattgt atgatactga atcagtagat
     7741 gacgcagtta ttactgcaga tcaagtaaat aaatataaag acaacaaagg attaaacttt
     7801 gtgttaacga ctgggacatt ttttgtaaaa atgaatgaaa aacaatatcc tgattttaaa
     7861 aacaaaaatt taagattggc tatcgcacaa gcaatagata aaaaaggata cgttgattca
     7921 gtgaaaaaca atggctcaat tccttccgat acactaacag ccaaaggaat tgcgaaagcg
     7981 cctaatggca aagattatgc gagtaccatg aattcgcctt taaaatataa tcctaaagaa
     8041 gcaagagcgc actgggacaa agctaaaaaa gagttaggta aaaatgaagt gacattttca
     8101 atgaacacag aagatacacc agatgcaaaa atatctgctg aatatatcaa atcgcaagtt
     8161 gagaaaaatt taccaggagt tactttgaaa attaagcaat taccgtttaa acaaagagta
     8221 tcactagaac tgagtaacaa ttttgaagca tcacttagtg gttggtctgc agattaccct
     8281 gatcctatgg cttatttaga aacaatgacc acaggtagcg cacaaaataa tacagactgg
     8341 ggtaataaag aatatgatca attacttaaa gtagcaagaa ccaaattggc acttcaaccg
     8401 aacgaacgat atgaaaactt gaaaaaagca gaagaaatgt tcctaggaga tgcaccggta
     8461 gcaccaattt atcaaaaagg tgttgcacat ttaacaaatc ctcaagtaaa aggattaatt
     8521 taccataaat ttggtccaaa taactcactt aaacatgtat atattgataa atcgatagat
     8581 aaagaaacag gtaagaagaa aaaataatat gctttgtaaa ttaggctgga gacatatctc
     8641 cagtcttttt gtgttggata aaaactttgg gaataaaaat ttaaaataag tcgtttttta
     8701 aattactgaa attgattaaa tgcataaata actgaatatt ctaaaaataa acttgtaata
     8761 attttttcta tgagtaaact aaaaagaaaa aatt
//
LOCUS       DAMQWL010000098         8749 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.099, whole genome shotgun sequence.
ACCESSION   DAMQWL010000098 DAMQWL010000000
VERSION     DAMQWL010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 8749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8749
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.099"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(853..1296)
                     /locus_tag="PF788_002100"
     CDS             complement(853..1296)
                     /locus_tag="PF788_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6304354.1"
                     /translation="MSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITN
                     HDDYFLLLLIKENKIIGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLADS
                     EEFSKRLNCKAITLNSGNRNERLSAHKLYSDNGYVSNTSGFTKQL"
     gene            complement(1461..1838)
                     /locus_tag="PF788_002101"
     CDS             complement(1461..1838)
                     /locus_tag="PF788_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001797573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304355.1"
                     /translation="MFISLAIWSINSMGNKQCISLNLLLSDDTFAVISVMTTLGTAIL
                     GGIAPSIYGIFTSPIDKKSSFRAISDWEQEQRNNVKDLMMLLPFTLLSILIVIFIFQF
                     AYSKLFNTIAIIIFIIILVVMFF"
     gene            complement(2156..2746)
                     /locus_tag="PF788_002102"
     CDS             complement(2156..2746)
                     /locus_tag="PF788_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDG6304356.1"
                     /translation="MSELTAKQARFVNEYIRTLNVTQSAIKAGYNANSAHVTACRLLK
                     KPHIKQYIQEQKDKIIDENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSG
                     KVQLVYNEHVELIEVPIKPSDSLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGG
                     DEGLDKAVKDVSNDNPNHTVIVDDIPLEDYESIRFL"
     gene            complement(2743..2955)
                     /locus_tag="PF788_002103"
     CDS             complement(2743..2955)
                     /locus_tag="PF788_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island family protein"
                     /protein_id="HDG6304357.1"
                     /translation="MTDDNVNDHIIKNHIEMIVDRLATDKEFYIFDSLIQGLSYQDIS
                     SALDCSEQSVILWYETILDKIVGVIK"
     gene            3016..3562
                     /locus_tag="PF788_002104"
                     /pseudo
     CDS             3016..3562
                     /locus_tag="PF788_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002476300.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(3657..5273)
                     /gene="groL"
                     /locus_tag="PF788_002105"
     CDS             complement(3657..5273)
                     /gene="groL"
                     /locus_tag="PF788_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500736.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDG6304358.1"
                     /translation="MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFT
                     APLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEG
                     LKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYI
                     SEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYI
                     LVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKA
                     PGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGD
                     GDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKL
                     RIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQ
                     IAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVA
                     AMFLTTEAVVASIPEKNNDQPNMGGMPGMM"
     gene            complement(5349..5633)
                     /gene="groES"
                     /locus_tag="PF788_002106"
     CDS             complement(5349..5633)
                     /gene="groES"
                     /locus_tag="PF788_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDG6304359.1"
                     /translation="MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGT
                     GRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE"
     gene            5808..6551
                     /locus_tag="PF788_002107"
     CDS             5808..6551
                     /locus_tag="PF788_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDG6304360.1"
                     /translation="MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIY
                     IQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIV
                     LTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGN
                     RIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNG
                     FVVIFQLLNPEALKKATEQANFIYHIFIP"
     gene            complement(6576..7829)
                     /locus_tag="PF788_002108"
     CDS             complement(6576..7829)
                     /locus_tag="PF788_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304361.1"
                     /translation="MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTN
                     LNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPST
                     DSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDNPKPNPDPKPDP
                     NKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNAS
                     DGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEV
                     TDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGE
                     IGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMM
                     VVFSIMLFLFVKRNKKKNKNESQRR"
     gene            8026..8652
                     /locus_tag="PF788_002109"
     CDS             8026..8652
                     /locus_tag="PF788_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDG6304362.1"
                     /translation="MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHA
                     VKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSY
                     GTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYN
                     PLVDEMTSNEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK"
BASE COUNT         2791 a         1595 c         1203 g         3160 t
ORIGIN      
        1 aataactatc catctttaat aagaaatgaa ctagtgtttt aatctattac attaaaaaaa
       61 ctacctaaac aggtagtttt ttatttattt taggccgatt aaatgtctta tgtctttaat
      121 taagtaaaat gcacaagtac acctttaaaa agatttactc aaaactaaac tatacctagt
      181 taaccgcttg tgattaagaa attttaaatg tggtttcttt taattatgtc aaccacccat
      241 aaggatttta atcaagcact cattcattcc tgcactcgca atatgcatta cttatagaag
      301 tggatgcact ctcatattat ggcaatacca taactcccgc accataatga tttaaatacc
      361 attatgaatc tcaattacaa attagcacat aaaaaagacg cctcccataa gtctagtcac
      421 caaatggaaa acgtctcgta attaaaatat atttgcgtgc attctaattt gtacttagaa
      481 tacatcatac tcgttcataa tgtaattttc taattagtca aaactatata cagttttaca
      541 tcattcccgg cattatgcac taataaaaac ttactttaat acacgcttta aagattatta
      601 aatcagcgtt ttaattttta gacaacgcta ttatttttag tttttcaatt ctattatgtc
      661 ataattatgt cactcaaaaa ctgttttcca acattgattt attgttggaa aatctcgaaa
      721 atctagtcta tttctccaac aatcgaagaa ttatgccctt ttttctccct ttaaataagt
      781 cataatacga ggcatacatg caacatttac aataaaatat gttcctacat cgtattatac
      841 gaatgctcac acttatagtt gtttagtaaa cccagatgta ttgctaacat acccattatc
      901 actatatagt ttatgtgcag atagtctttc atttctatta ccactattta gtgttattgc
      961 tttacaattc aaccgtttag aaaattcttc agaatcagct aataatctct ttccataacc
     1021 ttttttccta aattcagaat gtataacaaa cgcaaggatt ctcatatact ctgcattttt
     1081 ttcgtaaaac atcattttac acataccact taaaccaatt attttatttt cttttatcaa
     1141 aagcagtagg aagtaatcat catgattcgt tattttcttt agtctctttt ttaaatcatt
     1201 ctcatttgtt ggataaccta gatcatcata taatttacat agttgattta atttttcaaa
     1261 atcactgtta ttaaacaatc ttgtaattat gctcatataa cccaccctaa aaatattatg
     1321 tacctattgt tacatacaat agatacgcaa aatcatttct cactgcaaat caggacgttt
     1381 ctcagcgtaa acaaatcatt tctattcttt tgaaaaatat ctgcatatct tcacagtaat
     1441 tttataacag attaataaaa ttaaaaaaac ataacaacaa gtattataat aaatattata
     1501 atagctatcg tattaaatag tttagaatat gcaaactgaa aaataaaaat cacaattaaa
     1561 atactaagta atgtaaatgg taatagcatc atcagatctt taacattatt tctttgttct
     1621 tgctcccaat cgctaatagc cctaaaacta ctttttttat ctataggcga tgtaaaaata
     1681 ccatatattg aaggtgctat acctcctaaa atagcagttc ccaaagttgt cattactgaa
     1741 attactgcga aagtatcatc cgaaagcaat aaattcaaac taatgcattg tttattaccc
     1801 atcgaattta ttgaccaaat agctagagaa ataaacaacc caaaatttaa aataaatgat
     1861 atagtaatag caattgttta caaaacacga aatttttcat ttttatttat attatccatt
     1921 tttctccctt tttcttaaat cattttatta tatattacaa taatcaatct gaaatgttga
     1981 tgtaatttga aaaaaatatc atacttttac tcctgaaaac ctccctaaat catcaatatg
     2041 aaaatcagta ttaggatatt gcgtttacaa ctcttttaaa tctcactcat tcttctcatc
     2101 gtcttaaccg atactatcaa taaatactgg caacaccata aaatatatac ccaatttata
     2161 aaaacctaat tgactcataa tcttctaacg gtatatcatc cacaatcaca gtatgattag
     2221 gattatcgtt agatacatct ttcactgcct tatctaaccc ctcatcacct ccgtcccatt
     2281 caccaatatt aatgaatata ggtacattac cgtttatatc atgcttatct gtaaataatt
     2341 tatgatattt acccaacata tcacgagctt ttaaactatc actaggtttt attggtacct
     2401 ctatcagttc aacatgttca ttatagacta attgtacttt gccactttgt ggattttctt
     2461 tatattctcc acgcttgact acaacttctt tcgtttctgt ttcatcaccg actgccgcat
     2521 tcgttagcac atgtaataac tcttttgcgg ttaatacatt ctcatctata atcttatctt
     2581 tttgttcttg tatatattgc ttgatgtgcg gctttttcaa taacctacac gctgtcacat
     2641 gtgcgctatt tgcgttatat cctgctttta tggcactttg tgttacattc agtgttctaa
     2701 tatactcatt cacaaaacgt gcttgctttg cagttaactc actcatttta tcacccccac
     2761 aattttatct aatatggttt cataccataa tattacagat tgttctgaac aatctaaggc
     2821 actactaata tcttgataac taagtccttg tataagggag tcaaaaatat aaaactcttt
     2881 atcggtcgct aatctgtcaa caatcatttc tatgtgattc tttataatat gatcattgac
     2941 attatcgtct gtcatcaatt cgtcagaatc ttcatcacct attaaaaaga aatcatcagt
     3001 atttatttca tcatcgcccc gttaactagc tttgaagtct ttagcacact tgcatatacc
     3061 ggctgtcgtg ctggcgagat actagcattg aagtggtctg atattgattt tgaaaacaac
     3121 acgattagta ttactaaaac atattacaat ccaaataata acaagaagaa atatcagata
     3181 cttcccccta aaactgaaag ttctatcggt aagatttccg ttgacccaaa tgtaataaag
     3241 gtgttgcgtg attataagat aaacgttcaa aataattgga aaaacgaatt atataatgat
     3301 aaccattgta atgaaaaaac tatcaatgtg gatacaaacc attatgtcac gtaccagcat
     3361 actcaaaaat atctctacgc actcattcag atacacacat tgcgcattgc tcatagaatc
     3421 aggtgtacac attaaagaaa tacaagaacg attacggcat aaagatatca ataccactat
     3481 gaatatctat gctaaaatca caaattcata caaaaaagac gcctcccata agtttagtca
     3541 ccaaatggaa gacgtctcgt aattaaaata tatttgcgtg cattctaatt tatacttaga
     3601 atgaatcata ctcgtgcata atgtaatttt ctagttagtc aaaactataa acagttttac
     3661 atcattcctg gcatgccacc catgttaggt tggtcattat ttttttctgg aattgatgct
     3721 acaaccgctt cagtcgttaa gaacattgct gcaacacttg cagcatgttg taatgctgag
     3781 cgtgttactt tagttggatc aacgatacct tcttctaaca tattaaccca ctcgtttgta
     3841 gcagcgttaa aaccaacacc cggctctgcg tttttcaaac gttctacaat aacagaacct
     3901 tctaatcctg cattttcagc aatttgacga actggtgcag ttaatgcttt aagtacaata
     3961 tttacacctg tttcaatgtc accttcagct tcaatttcac ttactttttg gtaaacattt
     4021 actaatgcag taccaccacc tgcaacaata ccttcttcaa ctgctgcacg tgtagaattt
     4081 aatgcatctt caatacgtaa tttacgttct ttaagctctg tttcacttgc tgcacctact
     4141 ttgataactg caacaccacc tgctaattta gctaagcgct cttgtaattt ttcacgatca
     4201 aagtcagatt cagtttcttc aatttgagat ttcaattggc taacacgtgc atcaatgctg
     4261 ttttcgtcac cgtcaccatc aacaacagtg gtattatctt tagttacttc tactttactt
     4321 gcagtaccta acatatcaat tgatgcatct tttaaatcta agcctaaatc atcagtaatc
     4381 acttgcgcac cagttaaaat agctaaatct tcaagcatcg cttttctacg atcaccaaaa
     4441 ccaggtgctt ttactgcaac agctgtaaat gtgccacgca tacggtttag cacgatattt
     4501 gttaatgcat cgccttcaac ttcatcagct acaattaaga ttggacgatt agattgaacc
     4561 acttgttcta ataaaggtaa gatatcttgg aaagacgaga ttttcttatc tgttactaaa
     4621 atgtatgggc gttctaattc agcaaccatt ttatctgaat cagtaaccat atacggtgat
     4681 tgataaccac gatcaaattg cataccttca accacttcta gttcagtgtt tagtccattt
     4741 gattcttcaa ttgtaatgac accatcgtta cctacttttt ccatagcttc agaaatataa
     4801 cgtccaattt cttcatctgc tgctgaaatc gcacctactt gcgcaatttc atttttattt
     4861 tcaacttttt gagaattttc atgtaacgct tcaacagcaa ctttaactgc tttgtcgata
     4921 ccttgtcgta aaccaactgg gttcgcacca cttgtaacat ttttcaagcc ttcttgaatc
     4981 attgcttgag ctaatactgt tgcagttgtc gtaccgtcac cagcaatttc atttgtctta
     5041 tttgcgactt cttgaactag tttagccccc atattttcat atggatcttc taattcgatt
     5101 tctttagcaa tcgtcacacc atcattcgta attaaaggtg ctgtaaactc tttatctaat
     5161 acaacattac gtcctttagg accaatcgtt actttaactg catttgcaag ttggtcaaca
     5221 ccacgtaaca ttgcttgacg tgcatcttca gagaatttca attgtttaac cataaatgat
     5281 aaacctccat ttgtttagtt gtgtttcatt ttcgttctat ttaatttatt tatgaattaa
     5341 gttctgtatt attcaataac tgctaaaata tcttcttcat ttaataccag atatgtttca
     5401 ttatctcgtt taacttctgt accagcatat tgttggaaca cgacacggtc cccttctttc
     5461 acttcaggag tcactcttgt accatcattt aataggcgtc cagttcctac tgcaacgata
     5521 acgccttcgt ttgatttttc tttagcacta tcagttaaaa caataccact tttagttgtt
     5581 tgttcttgtt cttttttctc aataatcaca cgatttccaa ttggttttag catgattgtt
     5641 cctccttaaa aaacctaaag tttagcactt aacattaaag agtgctaaca tacatttata
     5701 ataatcaaat ttggtcaaaa tttcaagtca taacctttta attaagtttt gtaacttcaa
     5761 gttatttacg ataaaataaa ttataaacaa atatttggag gaaaattatg acaagattat
     5821 gggcatcatt gctaactgtt attatttata tattgtctca atttttaccg cttctcattg
     5881 taaaaaaatt accatttgta caatatagtg gcatagaact gactaaagca gtcatttaca
     5941 tacaacttgt tctattttta atcgccgcca cgacgattat tttaattaat ttaaaaatta
     6001 aaaatccaac aaaattagaa ttagaagtta aagaacctaa aaaatatatc attccatggg
     6061 cattgcttgg atttgcattg gtaatgattt atcaaatggt agtgagcatt gtattaacgc
     6121 aaatttatgg tggacaacaa gtaagtccta atacagaaaa gctaattatt attgctcgaa
     6181 aaatacctat atttatcttc tttgtatcta ttattggtcc tttattagaa gaatatgtat
     6241 tcagaaaagt aatctttgga gaattattta atgcgattaa aggtaatcgt atcgtggcat
     6301 ttattattgc tacaacagta agttcattaa tatttgcatt agcacataat gatttcaaat
     6361 ttattccagt ttattttggt atgggtgtca ttttttcatt agcatatgtt tggacaaaac
     6421 ggcttgctgt tccaattatt atccatatgt tacaaaacgg atttgtcgtt atattccaat
     6481 tacttaatcc tgaggctttg aaaaaagcca cggaacaagc gaattttata tatcacattt
     6541 ttattccata ataaaaaaaa cgaatcacac acggattatc gtcgctgtga ttcgttttta
     6601 tttttctttt tatttcgctt tacaaataag aatagcatga ttgaaaatac caccatcata
     6661 gaacatacaa ttgctagcca acttttacta tatgcagttg acgcactttt cttattatct
     6721 tcttgttttt taactactgt aaaatcgtct ttttcatgcg gttcaaatga gcgttgtttt
     6781 gaatccggct tatcttcggg ctttttcaaa tctggcattg atccaatttc accagtaatt
     6841 aatgcgagta cttgttcatc taaattacga tagtaccttt ctgatttcaa tggattgaaa
     6901 tattggaatc taaagtaatt cgattgctgt tgtaatccat ttaaatatgc atttccgctg
     6961 aaattttgtt ttcgaataat attataaatg tcttcatcag taacttctcc ataatctttg
     7021 cccaacttat taatttgatt taaaatatac ggattatact tgtaagcccc atttgccaag
     7081 gctaaaaatc gttgggatac aaaatcatta ccagtaggat tttgtgagtt tccttgattc
     7141 ccatttggtt gccattgacc ttgattagat ccatctgaag catttgggtt ccatgtcccc
     7201 ccatttttcg agccaccaga atgattggaa tccccaggtt gatcgggatc tggtgacggg
     7261 ttaggatttg gcttattagg gtctggtttt ggattcggat ttggctttgg tttatctgga
     7321 tctggttttg gatccggatt tggcttatta gggtctggtt ttggatctgg atttggtttc
     7381 gggttatctg gatctggttt tggatccgga tttggctttg gtttatctgg gtctggtttt
     7441 ggatccggtt ttggtttcgg gttatctgga tctggtttag gattcggact tgggttttgg
     7501 ttatttgggt ctggttttga atctgtactt gggttttggt tgtttgagtc tggcttcaca
     7561 ttattcgaat caggattagc atcacgacta ttcgaacctg ttccttcatt acccgtttga
     7621 tttgattcgt gaggtgtccc agtctcatta ttattcattt cactatttac tgatggtgaa
     7681 gttatattat gattcaaatt agtagttggt ttttctccat ttaagttatc ctttgcttca
     7741 actgtgtgcg ttgcaagccc taaactacta ctacttaaaa ttaaaatact tgttgaaagt
     7801 aacattttct taaaccaatg atatgacatt tcacgagaca cctccctttt tcatgtaagt
     7861 attaatctaa gtataataaa tatgcgttga aaatgcattt atatttggaa tttgaaaatg
     7921 aatattaata ttcttgaaat tttcgtaaat attgctttac aagtacgagt ataaatttta
     7981 tacttagtct attaagtatt ctttactaaa gaaggagcaa taattatggg cttatttaaa
     8041 aaagataaaa aagcaatgac ttttgacaat gcaatggaag aaagacgttc aatatataat
     8101 ttgaaagatt cgatatcaat tagcgatgac gaattagaat caatgattgc acatgcagtt
     8161 aaacatgttc cttcatcatt taattctcaa tcaactagaa ttgttctctt gttaaatgac
     8221 aacaataata aattttggga taacacaaaa gcaattttaa aagaagtcat gggagagaat
     8281 cgtgatttcg agccaactga acaaaaaatt gataacttca aacattcata cggtacaatt
     8341 ttgttttatg aagatcaaga tgttgtaagt ggtttacaag aacaaatgcc aaactactat
     8401 gataattttg caatatggtc aactcaaaca aatgccatgc atcaatttgc aatttggact
     8461 gcattagcta ctaaaggcat aggtgcttca ttacaacact ataatccact tgttgatgag
     8521 atgacttcaa atgaatttaa tattcctaaa agttggaaac ttattgctca aatgccattt
     8581 ggtgatattc gtgaagctgc tggcgaaaaa acatttaatc cagtggaaga tcgtttcgta
     8641 ataaaaaaat aatcaatata ttgttaggaa tgggacagaa atgataaaga atcattagtt
     8701 attcattatg tagtagttct tacacattag ccgctgctaa tgtgcactt
//
LOCUS       DAMQWL010000099         8658 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.100, whole genome shotgun sequence.
ACCESSION   DAMQWL010000099 DAMQWL010000000
VERSION     DAMQWL010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 8658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8658
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.100"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(15..437)
                     /locus_tag="PF788_002110"
     CDS             complement(15..437)
                     /locus_tag="PF788_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HDG6304363.1"
                     /translation="MSETIFGKILTGEIPSFKVYEDDYVYAFLDISQVTKGHTLLIPK
                     KASANIFETDEETMKHIGAALPKVANAIKRAFNPDGLNIIQNNGEFADQSVFHIHFHL
                     IPRYENDIDGFGYKWETHEDILDNDAKQQIAEQIQAQF"
     gene            571..1311
                     /locus_tag="PF788_002111"
     CDS             571..1311
                     /locus_tag="PF788_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6304364.1"
                     /translation="MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTT
                     IKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYIPESPVIYEELTLEEHIEMTAMA
                     YDIDRDETMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
                     FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLE
                     ALRQQTGLHNQTLDDIYIHVTQGGDVHA"
     gene            1304..2527
                     /locus_tag="PF788_002112"
     CDS             1304..2527
                     /locus_tag="PF788_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304365.1"
                     /translation="MRNQATTLFNKRLHALRKEKNYYNKFIFNGHFMVFLLILLGAFI
                     FGYGEWLKHIPTNINFSLIAAVIVALTSIFPMRPLLKEADKIFLLPFEKHMSQFMRHA
                     ILYSYFARILIQLIIVIVMFPLFYNINQHNVAFYICFGVSALIFPYVGLRLRWQWYQS
                     GLKTWQVNLISFITFALTYYLLLAPKWYIAFVMVALPVLIEFLVKKYKPGFLYPWEKM
                     IAIEHRHHMNYYKFVNMFTDVKHLKESAVRRSYLDILLPVPKGSKFNSNAMYLFLFIR
                     SFIRGRDAFNIIFRLVIIAVLLMVWLSYPLVTAIIGCLFVYIILLQMAQFYSQQAYGL
                     WPQVWPVPEEKVIKGYEQFLYRLMFVICTVFAVTFIIKHMTLFYVVLIFYIVGLLTIR
                     SIIKKLKYQETLLRD"
     gene            complement(2651..3154)
                     /gene="traP"
                     /locus_tag="PF788_002113"
     CDS             complement(2651..3154)
                     /gene="traP"
                     /locus_tag="PF788_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction protein TRAP"
                     /protein_id="HDG6304366.1"
                     /translation="MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGE
                     TVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKS
                     YRLLRPAKGTTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFER
                     YLYPIKE"
     gene            3317..3427
                     /locus_tag="PF788_002114"
     CDS             3317..3427
                     /locus_tag="PF788_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304367.1"
                     /translation="MIKCQFYDIYLLKIRTNERYDNIDKNDFNLGGLYGA"
     gene            3417..4454
                     /gene="hemE"
                     /locus_tag="PF788_002115"
     CDS             3417..4454
                     /gene="hemE"
                     /locus_tag="PF788_002115"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDG6304368.1"
                     /translation="MVHNKNNTILKMIKGEETSHTPVWFMRQAGRSQPEYRKLKEKYS
                     LFDITHQPELCAYVTHLPVDNYHTDAAILYKDIMTPLKPIGVDVEIKSGIGPVIHNPI
                     KTIQDVEKLSQIDPERDVPYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSK
                     NYNFTKAMMYRDEATWFALMNHLVDVSVKYVTAQVEAGAELIQIFDSWVGALNVEDYR
                     RYIKPHMIRLISEVKEKHDVPVILFGVGASHLINEWNDLPIDVLGLDWRTSINQAQQL
                     GVTKTLQGNLDPSILLAPWNVIEERLKPILDQGMENGKHIFNLGHGVFPEVQPETLRK
                     VSEFVHTYTQR"
     gene            4512..5435
                     /gene="hemH"
                     /locus_tag="PF788_002116"
     CDS             4512..5435
                     /gene="hemH"
                     /locus_tag="PF788_002116"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDG6304369.1"
                     /translation="MTKKMGLLVMAYGTPYKESDIEPYYTDIRHGKRPSEEELQDLKD
                     RYEFIGGLSPLAGTTDDQADALVSALNKAYADVEFKLYLGLKHISPFIEDAVEQMHND
                     GITEAITVVLAPHYSSFSVGSYDKRADEEAAKYGIQLTHVKHYYEQPKFIEYWTNKVN
                     ETLAQIPEEEHKDTVLVVSAHSLPKGLIEKNNDPYPQELEHTALLIKEQSNIEHIAIG
                     WQSEGNTGTPWLGPDVQDLTRDLYEKHQYKNFIYTPVGFVCEHLEVLYDNDYECKVVC
                     DDIGANYYRPKMPNTHPLFIGAIVDEIKSIF"
     gene            5459..6859
                     /locus_tag="PF788_002117"
     CDS             5459..6859
                     /locus_tag="PF788_002117"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HDG6304370.1"
                     /translation="MTKSVAIIGAGITGLSSAYFLKQQDPNIDVTIFEASNRPGGKIQ
                     SYRKDGYMIELGPESYLGRKTIMTELAKDIGLEQDIVTNTTGQSYIFAKNKLYPIPGG
                     SIMGIPTDIKPFVTTKLISPLGKLRAGFDLLKKPTQMQDGDISVGAFFRARLGNEVLE
                     NLIEPLMGGIYGTDIDKLSLMSTFPNFKEKEEAFGSLIKGMKDEKNKRLKQRQLYPGA
                     PKGQFKQFKHGLSSFIEALEQDVKNKGVTIRYNTSVDDIITSQKQYKIVYNDQLEEVY
                     DGVLVTTPHQVFLNWFGQDPAFDYFKTMDSTTVATVVLAFDEKDIENTHDGTGFVIAR
                     TSDTDITACTWTSKKWPFTTPEGKVLIRAYVGKPGDTVVDDHTDNELVSIVRRDLSQM
                     MTFKGDPEFTIVNRLPKSMPQYHVGHIQQIRQIQAHIKQTYPRLRVTGASFEAVGLPD
                     CITQGKVAAEEVIAEL"
     gene            7182..7736
                     /locus_tag="PF788_002118"
     CDS             7182..7736
                     /locus_tag="PF788_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDG6304371.1"
                     /translation="MTDVIIVHSMHGNSRNHWYQWLEHNLTLEGYDVTLFNFESPEAK
                     TVDQWIEAMTKQINVRKKDTYFVTHGLGSITALKYIEMIDQPIEGFFSIAGFKEDAEN
                     IDLDIDLSNVTIDYDNIKKKVDNFYGLSSKNDKYVSYKETQRLMNALEGNLRIVEDGG
                     HFLEEDGFETFTALQDRMQDYMTR"
     gene            8208..8281
                     /locus_tag="PF788_002119"
     tRNA            8208..8281
                     /locus_tag="PF788_002119"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8242..8244,aa:Met,seq:cat)
     gene            8303..8378
                     /locus_tag="PF788_002120"
     tRNA            8303..8378
                     /locus_tag="PF788_002120"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8336..8338,aa:Asp,seq:gtc)
     gene            8395..8467
                     /locus_tag="PF788_002121"
     tRNA            8395..8467
                     /locus_tag="PF788_002121"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8428..8430,aa:Phe,seq:gaa)
     gene            8481..8556
                     /locus_tag="PF788_002122"
     tRNA            8481..8556
                     /locus_tag="PF788_002122"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8514..8516,aa:His,seq:gtg)
     gene            8572..8645
                     /locus_tag="PF788_002123"
     tRNA            8572..8645
                     /locus_tag="PF788_002123"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8604..8606,aa:Gly,seq:tcc)
BASE COUNT         2959 a         1237 c         1648 g         2814 t
ORIGIN      
        1 gattaagcat acatttaaaa ttgtgcttga atttgttcag caatttgttg ttttgcatcg
       61 ttatctaaaa tgtcttcatg tgtttcccac ttataaccaa atccatcaat atcattttcg
      121 tatcgaggaa ttaagtggaa atgaatatga aatacagatt gatctgcaaa ctcaccatta
      181 ttttgaataa tgtttaaacc atcaggatta aatgcacgct taatagcatt tgctacttta
      241 ggtaatgctg caccgatatg tttcattgtt tcttcatcag tttcaaagat attagcagaa
      301 gcttttttag gaattaataa cgtatgtcct ttagtaactt gtgatatatc taaaaaggca
      361 tagacataat cgtcttcata tactttaaag ctaggaattt ctccagttaa aattttgccg
      421 aaaattgttt ctgacatgat gactacactc cttttcaact agtattacca ttcattataa
      481 cattgtcgct aaaaattcga tattaggaca tgtgtattta atatgagcat tttataattt
      541 ttggtacaat ataagtcatg gaggtgcctt atgacagtta aagtagaaca gcttacaggt
      601 ggatatggaa aacgccctgt aattaaagat ataaattttg aattaaacaa aggcgaaatt
      661 gttggactta ttggccttaa tggcgctggt aagagtacaa cgattaaaca tatgctagga
      721 ttgcttacac ctatggaagg atctctatca atttcagata tcaacattaa tgatgacata
      781 gaggcttata gaagaaagtt atcttatatt ccggaatcac cggttattta tgaagaactc
      841 acattagagg aacacattga gatgacagca atggcatatg atattgatcg tgatgaaacg
      901 atgaatcgag caatgccatt attaaagaca ttccgtttag aaaatgagtt gaaagttttt
      961 ccgagtcatt tttctaaggg gatgaaacaa aaagtcatga ttatttgtgc gtttatcgtt
     1021 aatcccgaat tgtatattat agacgaacca ttccttggcc tagatccatt aggaattcaa
     1081 tccatgttag atttaatggt tgaaaagaaa aacgaaggta gaaccgttct aatgagtaca
     1141 catattttag caacagctga acgttactgt gatcgtttta tcatactaga cgaaggtgaa
     1201 gtcgttgcat ttggagattt agaagcattg agacaacaaa ctggcttaca taatcaaaca
     1261 ttagacgata tatatattca tgtgacgcaa ggtggagatg tacatgcgta accaagctac
     1321 cacattattt aataaaagat tacatgccct tcgtaaagag aaaaattatt ataataagtt
     1381 tatatttaat ggtcatttca tggtcttttt acttattttg ctgggtgcat ttatttttgg
     1441 atatggtgaa tggttaaaac atattccaac gaatatcaat ttttcattaa tagcagcagt
     1501 gattgttgcg ttgacatcta tttttccaat gcgaccactg ttaaaagaag cggataaaat
     1561 ctttttatta ccatttgaaa aacacatgtc tcaatttatg cgtcatgcga ttttatatag
     1621 ttactttgcg cgcatattaa tccaactcat tattgttatt gtaatgttcc cgttgtttta
     1681 caatattaat caacataatg tggcatttta tatttgtttt ggagtcagtg cattaatttt
     1741 tccatatgtt ggtttacgct taagatggca atggtatcaa tcgggactta aaacatggca
     1801 agttaattta atatcattca tcacctttgc tctaacatat tacttactat tagctccaaa
     1861 atggtacatc gcatttgtga tggttgcttt gcctgtgtta atagaatttt tagttaaaaa
     1921 atataaacca ggctttttgt atccttggga gaaaatgatt gcaatcgaac atcgacatca
     1981 tatgaattat tataaatttg ttaatatgtt caccgatgta aaacatttga aagaatctgc
     2041 agtcagaaga agttatctag atatactttt accagttcca aagggtagta aatttaactc
     2101 taatgcgatg tatttattct tatttattag aagctttata agagggagag acgcatttaa
     2161 tattatcttt aggttagtaa ttattgcagt tttattaatg gtttggttat catatccatt
     2221 agtgacagca attattgggt gtttatttgt atatattata ttgttacaaa tggcacaatt
     2281 ttattcacag caagcatatg gcttatggcc tcaagtgtgg cctgtacctg aagagaaggt
     2341 aatcaaaggg tatgaacagt ttttatatag attaatgttt gttatttgta ctgtgtttgc
     2401 agtgacattt attataaaac atatgacgtt attctatgtt gtactcattt tctatattgt
     2461 aggtttatta acgattagaa gtattattaa aaagttgaaa tatcaggaaa cattattacg
     2521 agactaaaaa acttccattg gcatgtatgt tgtaaaggtg catgtaatgt tgaacgccaa
     2581 atgatacggc gttcagatta cattagcatc tatacgttaa cagcataacc aatggaagtt
     2641 ttcttcgaat ctattctttt attgggtata gatatctttc aaaataactt gaatgttgtc
     2701 cgcttgaacc aaagtaatga cttaatgcgt cttttgaaaa atggtcatta aaggcatcag
     2761 attgcttaaa gtcttcgtat gcatgtcgat cagcaaatcc gaaataaatt ttgtatgttg
     2821 tacctttagc aggtcttaac aaacgatagc ttttaaagcc accaaagttt ctgaaattat
     2881 cgtctacact aatcagtttc ttttcaagtt gatatgcatg atcttctgtt gatggaatga
     2941 agattgcaca atagaaatga tgttcactga attcaccaat ttctttaata acttcatata
     3001 ttgaaggtga ttttaaaaca gtctcaccat cagtttcttc aaaaataact gaagtatctg
     3061 atgctgaaaa ttggaatagt tgatgggtcg ggttattgat ttttatctga tgtaaaaatc
     3121 cataagtgcc ataagatgta tatagtttct tcatatgaaa ggtccccctt atgtttttat
     3181 ttattatacg atgataaact agtcattacc actattaata attgattaaa attactataa
     3241 tgaatcttgc gagatattta gaagtaatga tacaaaataa tggactttag aatttaaatt
     3301 tacaataaat agttctatga ttaaatgtca gttttatgac atttatttat tgaaaatacg
     3361 aacgaatgag cgatatgata atatagataa gaatgatttt aatttaggag gcctttatgg
     3421 tgcataataa aaacaataca attttaaaaa tgatcaaagg tgaagaaaca tcacatacac
     3481 ctgtttggtt tatgcgacaa gctggccgtt cgcaaccaga atatcgaaaa ttgaaagaaa
     3541 aatattcact attcgatatt acacatcagc cggagttgtg cgcttatgta acacatttac
     3601 cagttgataa ttatcataca gatgcagcaa ttttatacaa agatattatg acaccattaa
     3661 agccaattgg tgtcgatgta gaaattaaat cgggtattgg tccagtgatt cataatccaa
     3721 tcaaaacaat tcaagatgtt gagaaacttt ctcaaataga ccccgaacga gatgtaccat
     3781 atgtattaga tacaattaaa cttttaacag aagaaaagtt aaatgtgccg ctaataggat
     3841 ttactggggc accatttaca ttagcgtcat atatgattga aggcggacca tcgaaaaatt
     3901 acaattttac aaaagcgatg atgtatagag atgaagcaac atggtttgct ttaatgaatc
     3961 atttagttga tgtatctgtt aaatatgtaa cagctcaagt cgaagcaggt gccgaattga
     4021 ttcaaatttt cgattcatgg gtaggtgcat taaatgtcga ggattacaga cgttacatta
     4081 aaccacatat gattcgatta atcagtgagg ttaaagaaaa acatgatgtg ccggtaattt
     4141 tattcggtgt aggtgccagt catttaatca atgaatggaa tgatttaccg attgatgtat
     4201 taggcctaga ttggagaacg tctattaatc aggctcaaca attaggcgtt actaaaacat
     4261 tacaagggaa tttagatcca tcaattttat tagcaccatg gaatgtcatt gaagagagat
     4321 tgaaaccaat attagatcaa ggtatggaga acggtaaaca catctttaat ttaggacacg
     4381 gtgtattccc agaagtgcaa ccagagacgt tacgtaaagt aagcgaattc gtacacacat
     4441 atacacaaag ataatcatag ttttacattg aagcacatga aagataattc atttaaagga
     4501 aggtattatc aatgactaaa aaaatgggat tattagttat ggcttatggc acaccttata
     4561 aagaaagtga catagagcca tattatacag atattagaca tggtaaacgt ccatctgaag
     4621 aagaacttca agatttgaaa gatagatatg aatttatagg tggtttatca ccattagcag
     4681 gtacaacaga tgaccaggct gatgcgctag tttcagcatt aaataaagca tatgcagatg
     4741 ttgaatttaa actatactta ggattaaaac acatttcacc atttatcgaa gatgcggttg
     4801 aacaaatgca caatgatggc attactgaag caatcacggt agtactagca ccacattatt
     4861 cttcattttc agtaggatca tatgacaaac gtgctgatga agaagctgca aaatatggta
     4921 ttcaacttac acatgtgaaa cattattatg aacaacctaa atttattgaa tattggacga
     4981 ataaagtcaa cgaaacatta gctcaaatac cggaagagga acataaagac acggtattag
     5041 ttgtttcggc acatagtttg ccaaaaggtt taatcgaaaa gaataatgat ccatatccac
     5101 aagaactaga acatactgcg cttttaatta aagaacaatc taatattgaa catatcgcga
     5161 ttggttggca atctgaaggt aatacaggta caccttggtt agggccagat gtacaagatt
     5221 taacacgtga tttatatgaa aaacatcagt ataaaaactt tatatatacg ccagtaggtt
     5281 ttgtatgtga gcatttagag gtgctttatg acaatgatta tgaatgtaaa gtagtttgcg
     5341 atgatattgg tgcgaattat tatcgtccaa aaatgccgaa tacacatcca ttatttatcg
     5401 gtgcaattgt tgatgaaatc aagtctatat tttaatgacg aaagaagcgt gaaacgttgt
     5461 gactaaatca gtggctatta taggagcggg gataacaggt ttatcaagtg catatttttt
     5521 aaaacagcaa gatcctaata ttgatgtaac catctttgaa gcatcgaatc gtccgggggg
     5581 aaagattcaa tcgtatcgta aagatggtta tatgattgaa ctagggcctg aatcttattt
     5641 aggtagaaaa acgattatga cagaattagc gaaagatatt ggattagaac aagatattgt
     5701 tacaaatacg actggacaat catatatttt tgcgaaaaat aaattatatc cgattccagg
     5761 tggttcaatt atgggtattc caacagatat taaaccattt gttactacaa aattaatatc
     5821 gccacttggt aaattaagag cagggtttga tttattaaaa aaacctactc aaatgcagga
     5881 tggtgacatt tctgttggtg catttttcag agcaagatta ggtaatgagg tacttgagaa
     5941 tttaatagag cctttaatgg gtggtattta tggtaccgat attgataaat taagtttgat
     6001 gagtacgttt cctaatttta aagaaaaaga agaggcattc ggaagtctga taaaaggtat
     6061 gaaggatgag aaaaataagc gtctgaaaca aagacaatta tatcctggcg caccgaaagg
     6121 acaattcaaa caatttaagc atggtttaag ctcatttatt gaagcattag aacaagatgt
     6181 taaaaataaa ggtgtgacaa tacgctacaa tacgtcagtg gatgatataa ttacatctca
     6241 aaaacaatat aaaattgttt acaatgatca actagaagaa gtgtatgatg gcgtattagt
     6301 aacgacacca catcaagtgt ttttaaattg gttcggacaa gatccagcat ttgattactt
     6361 taaaacgatg gatagtacga ctgttgcaac tgttgtattg gcatttgatg aaaaagacat
     6421 tgaaaatacc catgatggta ctggcttcgt aattgcgaga acgagtgata cagacattac
     6481 cgcatgtact tggacatcga aaaaatggcc atttactaca ccggaaggta aggttttgat
     6541 tcgtgcgtat gtaggtaaac caggtgatac tgtggttgat gatcatacag ataatgaatt
     6601 agtatcgatt gtacgtagag atttaagtca aatgatgaca tttaaaggtg atcctgaatt
     6661 tacaattgtc aatcgtttgc cgaaaagtat gccacagtac catgtcggtc atattcaaca
     6721 aattagacag attcaagcac atattaaaca aacatatcca cgacttagag taactggtgc
     6781 atcttttgaa gcggttggac tacctgattg tattacgcaa ggtaaagttg ctgctgaaga
     6841 agtaatcgca gagttgtaag ttaattgttg gatggtgttg gtgtaggtgc gacgccttta
     6901 gataatgttt gatgaaatat agtcattttt aagttatata atggtggaag taatgtgtaa
     6961 atatagatac tttcagcggg aattattttt gtgaaattga agcagagaca aaggtttagc
     7021 tgtttttgaa tgatattgaa atgatgacaa tacactttaa ttagaaatgt cactttgcga
     7081 tataacattt ctaattaagg tgtttttatt ttacaattat aggtaatcag tcattttttt
     7141 aaaaatagaa aagaagtagt aagttgaaag gagagaatga gatgacagat gtaattattg
     7201 tacattctat gcatggaaat agtagaaatc attggtatca gtggttggag cataacttaa
     7261 ctttagaagg atatgacgta acattattta attttgaatc ccctgaagcg aagacagtgg
     7321 atcagtggat tgaagctatg acgaaacaaa ttaatgtacg caaaaaggat acatattttg
     7381 taacacatgg tttaggttca atcacagctt taaaatatat tgaaatgatt gatcagccga
     7441 ttgaaggctt tttcagtata gcgggcttta aagaagatgc agaaaatata gatttagata
     7501 ttgatttaag taatgtaacc attgattacg ataatattaa aaagaaagtt gacaattttt
     7561 acggattgag ttctaaaaat gacaaatacg tttcatataa agagacccag cgtttaatga
     7621 atgcattaga ggggaacttg cgaatcgtgg aagatggagg gcacttctta gaagaggatg
     7681 gcttcgaaac atttacagcg ttgcaagatc ggatgcaaga ttacatgaca cgatagttag
     7741 tgtatgggtt gtgttatgtt gtgtcagtag gtagctgctg attttgaaaa attgttgtaa
     7801 ttgaggcgtc aagcaatgtc ttagggctac aatgttatat tggtagtcgc tgactgaaag
     7861 aatatgcggt gtaacaagct tttataattt ctttttcaga aggtataggc gttgtaaact
     7921 ttataactcc tatacctttt taaatgcttt aacactattt atgacaacta ttagacactt
     7981 atatgataaa agggaataag aagcgttttt ttacacaaaa aactttgaaa atgtcgttga
     8041 cgtacactac aaaaatgaat atactaatat ttgtgttcaa cagagaacat gttgctacga
     8101 tatttaagta attatttaag agataacatt taaattaaat tcaaaaagtt cttgacttta
     8161 ggtttttgat tatggtatat taattaggta attcaaaata atattagcgc gggatagagc
     8221 agttcggtag ctcgtcgggc tcataacccg aaggtcggtg gttcaaatcc gcctcccgca
     8281 atacatagtt tttaatttaa taggtctcgt agtgtagcgg ttaacacgcc tgcctgtcac
     8341 gcaggagatc gcgggttcga ttcccgtcga gaccgccatt attattacca ttacggttca
     8401 gtagctcagt tggtagagca atggattgaa gctccatgtg tcggcagttc gactctgtcc
     8461 tgaaccattc ttaattcatg gcggttgtgg tgaagtggtt aacacatcgg attgtggttc
     8521 cgacattcga gggttcgatc cccttcagcc gccccataat cgtttacatt agcgggtgta
     8581 gtttaatggc aaaacctcag ccttccaagc tgatgttgtg ggttcgattc ccatcacccg
     8641 ctccattatt ttctatta
//
LOCUS       DAMQWL010000100         8273 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.101, whole genome shotgun sequence.
ACCESSION   DAMQWL010000100 DAMQWL010000000
VERSION     DAMQWL010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 8273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8273
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.101"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..173)
                     /locus_tag="PF788_002124"
     CDS             complement(<1..173)
                     /locus_tag="PF788_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015063485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HDG6304372.1"
                     /translation="MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHH
                     STVYRWVQEYAPI"
     gene            complement(843..1421)
                     /locus_tag="PF788_002125"
     CDS             complement(843..1421)
                     /locus_tag="PF788_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000690624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDG6304373.1"
                     /translation="MKIGYARVSTGLQNLNLQEDRLNTYGCEKIFNDHMSGSKSKRPG
                     LDKAIEFARSGDTIVVWRLDRLGRNMEDLITLVNELNERGVSFHSLEENITMDKSSST
                     GQLLFHLFAAFAEFERNLILERSSAGRIAARARGRYGGRPEKLNKQDLNLLKTLYDNG
                     TPIKTIAEQWQVSRTTIYRYLNKLEAKENKNK"
     gene            complement(1685..2065)
                     /gene="blaI"
                     /locus_tag="PF788_002126"
     CDS             complement(1685..2065)
                     /gene="blaI"
                     /locus_tag="PF788_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001284656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillinase repressor BlaI"
                     /protein_id="HDG6304374.1"
                     /translation="MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKT
                     IRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNF
                     AKNEELNNKEIEELRDILNDISKK"
     gene            complement(2055..3812)
                     /gene="blaR1"
                     /locus_tag="PF788_002127"
     CDS             complement(2055..3812)
                     /gene="blaR1"
                     /locus_tag="PF788_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactam sensor/signal transducer BlaR1"
                     /protein_id="HDG6304375.1"
                     /translation="MAKLLIMSVVSFCFIFLLLVFFRYILKRYFNYSLNYKVWYLTML
                     AGLIPFIPIKFSFIKFNNVNNQAPTVESKSHDLNHNINTTKPIQEFTTDIHKFNWDSI
                     DNICTVIWIVLVIILSFKFLKALLYLKYLKKQSLYLNENEKNKIDTILFNHQYKKNIV
                     IRKAEAIQSPITFWYGKYIILIPSSYFKSVIDKRLKYIILHEYAHAKNRDTLHLIIFN
                     IFSIIMSYNPLVHIVKRKIIHDNEVEADRFVLNNINKNEFKTYAESIMDSVLKTPFSN
                     KNILSHSFNGKKSLLKSRLINIKEADLKKQSKLILIFICIFTFFIMIIQSQFLMGQSL
                     TDYNYKKPLQSDYQILDESKNFGSNSGSFVMYSMKKDKYYIYNEKESRKRYSPDSTYK
                     IYLALFGLDRHIISDKNSRMSWNHKHYLFESWNKEQDLNTAMQNSVNWYFERISNQIP
                     KNYTAAQLKQLNYGNENLGSYKSYWMEDSLKISNLEQVIVFKNMMEQNNHFSKKAKNQ
                     LSSSLLIKKNEKYELYGKAGTGIVNGKYNNGWFVGYVITNHDKYYFATHLSDGNPSGK
                     NAELISEKILKGMGVLNDQ"
     gene            3919..4764
                     /gene="blaZ"
                     /locus_tag="PF788_002128"
     CDS             3919..4764
                     /gene="blaZ"
                     /locus_tag="PF788_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-hydrolyzing class A beta-lactamase
                     BlaZ"
                     /protein_id="HDG6304376.1"
                     /translation="MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALN
                     TKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEK
                     YVGKDITLKELIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIEL
                     NYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKKNKNFLLDLMFNNKNGDTLIKDGVPK
                     DYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKS
                     VMKEF"
     gene            complement(5290..5709)
                     /locus_tag="PF788_002129"
     CDS             complement(5290..5709)
                     /locus_tag="PF788_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000418034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDG6304377.1"
                     /translation="MELDNCINYLLSTSQNRVFKHFKSLLSPYNITPAEYGVLNCLIN
                     SNLNTPKAIGNTLNLEPSTISGILDKMSKKDLITRQTDNENRRTVLINSTNKAKDLWP
                     TLEKKAYQLNNHYFANLTNEETVVFKKILLKINKTTF"
     gene            5833..6804
                     /locus_tag="PF788_002130"
     CDS             5833..6804
                     /locus_tag="PF788_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000481285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDG6304378.1"
                     /translation="MFNAVVVRKSASNVSYKVEKVDESHLSKGDVLVKVVYSSINYKD
                     MLALQYKGGVIRDYPMIPGIDFAGIVESSSNDKFKEGDNVLVTGYDVGVTHTGGFSEY
                     AQVPGEWIVPIPQEMSIKESMVYGTAGFTAALSIFELEKYGMNIKSQPEILVSGATGG
                     VGSVAIQILHKIGYENITAIVRKEKQIEIAKKLGAKQVIIIEDDNKPLKKGIFDYFLD
                     TVGSNVTLYGLKRLNYQGVATVCGNVAGNSLNANILPFILRGIKLIGIDSVYVDHNIR
                     EDIWSKLANEWNIGNSLLYNEIGFEEFYKTIDQLLKGQHLGRTILKV"
     gene            complement(6976..7068)
                     /locus_tag="PF788_002131"
     CDS             complement(6976..7068)
                     /locus_tag="PF788_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002495832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Fst family toxin"
                     /protein_id="HDG6304379.1"
                     /translation="MLIIFVHIIAPVISGCAVAYYTYWLSKRNK"
     gene            complement(7225..7572)
                     /locus_tag="PF788_002132"
     CDS             complement(7225..7572)
                     /locus_tag="PF788_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020366422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304380.1"
                     /translation="MSYENTCDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKK
                     LKIILSLIKEDELCVCDISLILKMSVASTSHHLRLLYKNEVLDFYKDGKMAYYFIKDD
                     EIREFFSKNHEGF"
     gene            complement(7591..8208)
                     /gene="cadD"
                     /locus_tag="PF788_002133"
     CDS             complement(7591..8208)
                     /gene="cadD"
                     /locus_tag="PF788_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cadmium resistance transporter CadD"
                     /protein_id="HDG6304381.1"
                     /translation="MIQTVVAAAVLYIATAVDLLVILLIFFARAKTRKEYRDIYVGQY
                     LGSIILILVSLFLAFVLNYVPEKWILGLLGLIPIYLGIKVAIYDDCEGEKRAKKELNE
                     KGLSKLVGTVAIVTIASCGADNIGLFVPYFVTLSVTNLLLTLFVFLILIFFLVFTAQK
                     LANIPGIGEIVEKFSRWIMAIIYIALGLFIIIENDTIQTILGFIF"
BASE COUNT         2943 a         1206 c         1087 g         3037 t
ORIGIN      
        1 aaaattgggg catattcttg aacccaacgg tagaccgttg aatgatgaac gtttacacca
       61 cgttccctta atatttcaga tatatcacga taactcaatg catatcttag atagtagcca
      121 acagctacag tgataacatc cttgttaaat tgtttatatc tgaaatagtt catacagaag
      181 actccttttt gttaaaatta tactataaat tcaactttgc aacagaacct catttactat
      241 atgggcatct ctttcattat taatacaaag ctttgtatct ccgatattag gcaaaggtgt
      301 aaacgaatta ggtgatacta taggattcaa cattatatta atcgtttctt taataatgat
      361 tatcttctta ttttttataa atcgtagtaa aaatatctcc tatgattata taaaagttca
      421 aagaggtgaa gccaatgaat aaattagaaa aatggtcttt ggtatttatt atttttacat
      481 ttctctcttc attagcactt ttatatttca aatataattt tagttcggtt atgccagtcc
      541 taagtctttc tattttaact atactaatat tgttgacgag tattattact gtagtttcag
      601 ttaatgatga agatacttaa aacgttcatt agtgaaacag gtattatatt aaaaaagcgt
      661 acgaatttgt acgctttttt cttgtgttat tattaaaatc tcataacagg aaaatattat
      721 gagattttag acgctgtcag aacgtctctt ttacatcgag tgacattgaa tcaaagtctt
      781 tgtatgttaa tgatatataa aattatttag tagattcatt atagtaagct agattagttg
      841 ctctacttgt ttttattctc ttttgcctct aatttattga gataacgata aatagttgta
      901 cgtgaaactt gccactgctc tgcaattgtt ttaattggcg taccattatc ataaagtgtc
      961 ttaagtaagt ttaaatcttg tttatttaat ttttcaggtc tacctccata tcggcctcta
     1021 gcacgtgctg caattcgacc ggctgatgat cgctctaaaa ttaaattacg ttcaaactct
     1081 gcaaatgctg cgaataaatg aaataataat tgtcctgtag aacttgattt atccatcgtt
     1141 atattttctt ctaaactatg aaaactcaca cctcgttcgt taagttcatt aactaacgtg
     1201 attaaatcct ccatgttccg tcctagtcta tctaatctcc aaacaacaat cgtatctcct
     1261 gacctcgcaa attcaattgc tttatctaaa ccaggtcgct tactttttga accactcata
     1321 tggtcattaa atatcttttc acaaccatat gtatttaatc gatcctcctg taaattcaaa
     1381 ttttgtaatc cagttgaaac tcttgcataa cctattttca aaatacagac ctcctatata
     1441 cacctttagt gtaccataac ttgattacga ggtcttttgt gaacatagat tttttgttgg
     1501 gtttttgaac acataattct atgtaatact tacttattta gacaaaaaac aagagtgtac
     1561 agaaaatggt tattttctgg acactctcat ctttaataat atattttaaa tgtcattaac
     1621 aaaactaatt taataagagt caagtatggt ttacatatgt attatgtttg aaacatacct
     1681 ctaattactt tttactaata tcatttaaaa tgtctcgcaa ttcttcaatt tctttgttat
     1741 ttaattcttc atttttcgca aaattcagca ctaaactttt catatcccct ccatacagtt
     1801 tattaagaaa ggttttagca gttttcattt taatatcgtc ttctttaata tttgatgagt
     1861 aaaaataaat attttctgat ttgtatcgtt ttataatctc ttttttatat agtcttgtga
     1921 ttaatgttct aatcgtttta tcactaactt ctttatattt ttgaatttca actacaattt
     1981 cattagctga tactgatttt ttatcccata ttatattcat aacatcccat tcagccatag
     2041 atatttcaac ttgcttattg gtcatttaaa acacccattc cttttaatat tttttcactt
     2101 attaattcag catttttccc agacgggttt ccatctgata aatgtgtagc aaaataatac
     2161 ttatcatgat ttgtaattac gtaacctaca aaccacccat tattatactt cccgtttact
     2221 atacctgtac ctgctttccc atacagttca tacttttcat ttttcttaat caataatgaa
     2281 gaagataatt gattctttgc ttttttacta aaatggttat tttgttccat catattttta
     2341 aaaactatta cttgttcaag attagatatt ttcaaactat cttccatcca atagctttta
     2401 taacttccca aattttcatt accataattt aattgcttga gttgagccgc agtatagttc
     2461 tttggtattt gattactaat acgttcgaag taccaattaa ctgaattttg cattgctgta
     2521 tttaaatctt gttccttatt ccaagactcg aaaagataat gtttatgatt ccatgacata
     2581 cgtgaatttt tatcacttat aatatgacgg tcaagtccaa acagtgctaa ataaattttg
     2641 taagttgaat caggagaata tctttttcta ctttcttttt cattataaat atagtatttg
     2701 tctttcttca tgctgtacat aacgaaagat ccactatttg aaccaaaatt tttactttca
     2761 tctaaaattt ggtaatcgct ttgtaagggc tttttataat tataatcagt taaggattgc
     2821 cccattaaaa actggctttg aattatcatg ataaaaaaag taaaaataca aataaaaatt
     2881 agaattaatt ttgactgctt tttcagatcg gcttctttta tattaattaa tctacttttg
     2941 agtaatgatt ttttaccatt aaatgaatgg cttaatatat ttttgttgga aaatggggtt
     3001 tttaatacgg agtccataat agattccgca taagttttaa attcattttt gttaatatta
     3061 ttaaggacaa atctatcggc ttctacttca ttgtcatgaa ttatctttct ttttacaata
     3121 tgtactaatg gattgtaact cataataata gagaagatat taaagataat taaatgtaaa
     3181 gtatctctat ttttagcatg agcatattca tgcagtatta tatattttag tcttttatca
     3241 attacacttt taaaatatga actaggaatc aaaataatat atttcccata ccaaaaagtt
     3301 attggagatt gaatagcctc tgcttttcga atcacaatat tttttttata ttgatggttg
     3361 aaaagtatcg tatctatttt atttttttca ttttcgttta gataaagtga ctgtttcttt
     3421 aaatatttaa gatataataa ggctttcaaa aatttaaaac ttaaaataat aactaaaact
     3481 atccaaataa ctgtgcagat attatcaatt gaatcccaat taaacttatg gatatctgtt
     3541 gtgaactctt gaataggttt ggtggtattt atgttatggt tcaaatcgtg tgacttactt
     3601 tcaactgtgg gcgcttgatt attcacatta ttaaatttta taaaagagaa tttaattggg
     3661 ataaaaggaa ttaatccagc aagcatagtt agataccaaa ctttataatt taaactataa
     3721 ttaaaatagc gttttaatat gtacctaaaa aatactaaca atagaaatat aaaacaaaag
     3781 cttactacgc tcattattag taatttagcc attttgacac cttctttcaa atatttataa
     3841 taaacaattg acatcaatat tacaattgta atattattga tttataaaaa ttacaactgt
     3901 aatatcggag ggtttatttt gaaaaagtta atatttttaa ttgtaattgc tttagtttta
     3961 agtgcatgta attcaaacag ttcacatgcc aaagagttaa atgatttaga aaaaaaatat
     4021 aatgctcata ttggtgttta tgctttaaat actaaaagtg gtaaggaagt aaaatttaat
     4081 tcagataaga gatttgccta tgcttcgact tcaaaagcga taaatagtgc tattttgtta
     4141 gaacaagtac cttataataa gttaaataaa aaagtacata ttaacaaaga tgatatagtt
     4201 gcttattctc ctattttaga aaaatatgta ggaaaagata tcactttaaa agaacttatt
     4261 gaggcttcaa tgacatatag tgataataca gcaaacaata aaattataaa agaaatcggt
     4321 ggaatcaaaa aagttaaaca acgtctaaaa gaactaggag ataaagtaac aaatccagtt
     4381 agatatgaga tagaattaaa ttactattca ccaaagagca aaaaagatac ttcaacgcct
     4441 gctgctttcg gcaagacttt aaataaactt atcgcaaatg gaaaattaag caaaaaaaat
     4501 aaaaatttct tacttgattt aatgtttaat aataaaaacg gagacacttt aattaaagat
     4561 ggtgttccaa aagactataa ggttgctgat aaaagtggtc aagcaataac atatgcttct
     4621 agaaatgatg ttgcttttgt ttatcctaag ggccaatctg aacctattgt tttagtcatt
     4681 tttacgaata aagacaataa aagtgataag ccaaatgata agttgataag tgaaaccgcc
     4741 aagagtgtaa tgaaggaatt ttaatattct aaatgcataa taaatactga taacatctta
     4801 tagtttgtat tatattttgt attatcgttg acatgtataa ttttgatatc aaaaactgat
     4861 tttcccttta ttattttcga gatttatttt cttaattctc tttaacaaac tagaaatatt
     4921 gtatatacaa aaaatcataa ataatagatg aatagtttaa ttataggtgt tcatcaatcg
     4981 aaaaagcaac gtatcttatt taaagtgcgt tgcttttttc tcatttataa ggttaaataa
     5041 ttctcatata tcaagcaaag tgacaatagc attttacaag tattttttat tgttcgatta
     5101 gggtaaacct aaataataca taaattatat tacaatatgt ttattataga ggctaaagta
     5161 tcttagaaat ttggatagta ggtttttcgg gaataaaagt atagttggct ttaatatata
     5221 attaagctaa gctatcattt atatttactc gattataatt cgcacttcaa cttttttata
     5281 acgtaaaaat taaaacgtag ttttatttat ctttagtaat atctttttaa acactacagt
     5341 ttcttcatta gttaaattag cgaagtaatg attattaagt tgataggctt tcttttctaa
     5401 tgttggccat aagtcttttg ctttatttgt actgtttatt agcacagttc ttctattttc
     5461 attatcagtt tgacgtgtta ttagatcctt tttggacatc ttatctaata ttccagatat
     5521 tgttgaaggt tctaaattta aagtattacc aatcgcttta ggtgtattca aattactatt
     5581 aatcaagcaa ttcaaaacac catattctgc tggagtaata ttatagggac ttaataaact
     5641 tttaaaatgt ttaaaaactc tattctgaga agtactcaac aaataattta tacaattatc
     5701 taattccaca actaaaacct ctcttaaatc attagtattg actcgcttat catatcatga
     5761 taagttttgt aggaaaatag ttttgcaaca aaaacatact tctacaaaac aattgtgaaa
     5821 gaaggctaat aaatgttcaa tgcggtagta gtgagaaaaa gtgcatcaaa tgttagttat
     5881 aaagtagaaa aagttgatga atctcattta tcgaagggtg atgtattagt aaaagtggta
     5941 tactcttcaa taaattataa ggatatgcta gctttacaat ataaaggcgg tgtaattaga
     6001 gattatccta tgattcctgg tatagatttt gcaggtattg ttgaatcaag ttcgaatgat
     6061 aagtttaaag aaggcgataa tgtattagtt actggttatg atgttggcgt gacacataca
     6121 ggtggatttt cagaatatgc acaagtgcct ggagagtgga ttgttcctat tccccaagaa
     6181 atgtctatta aagagtctat ggtatatggc acagccggtt ttacggcagc attatcaatt
     6241 tttgaactag aaaaatatgg aatgaatatc aaatcacaac ctgaaatttt agtgtctggg
     6301 gctacaggtg gtgtgggcag tgttgctata caaattttac ataaaattgg atatgaaaat
     6361 atcactgcta tcgtaagaaa agaaaagcaa atagaaatcg caaaaaaatt aggtgcaaaa
     6421 caagtaataa taattgaaga tgataataaa ccgcttaaaa aaggtatttt tgattatttc
     6481 ttagatacag tggggagtaa tgtaacatta tacggtttaa aacgtctaaa ttatcaaggt
     6541 gttgctactg tatgtggaaa tgtagcagga aattcactta acgctaatat attaccgttt
     6601 attcttagag gtattaaatt aattggcatt gattctgtat atgttgatca taatatccgt
     6661 gaagatatat ggagtaagtt agcaaatgaa tggaatatag gaaattcact tctatacaat
     6721 gaaattggat ttgaagaatt ctataaaacg atagatcagc ttttaaaagg acaacattta
     6781 ggaagaacta ttttaaaagt ataagtgtga gtattcatta atacatttac tattaattca
     6841 atcattttgc atttctctac taaccagtgt tataatttat ataacgaaaa tgattaacaa
     6901 ttaatgcacc aatccccaca ctattgcagt agtgtgggga ttttttcgat gctggcttat
     6961 aaagtcgcct attaattatt tgttgcgttt actaagccaa taagtataat acgcaacagc
     7021 acagccactg atgactggtg ctatgatgtg aacgaaaatg attagcaaag taatgcacct
     7081 cctctcttcg tcaattgacg cctgagagat aggcgactct attattatac catctgtgaa
     7141 tatacaagca tatctacttc cgataagtcg tcttatgtta tataactttg ttttttatag
     7201 tatcaagaca agaagaaact cgtttcaaaa accctcatga tttttagaga aaaactctct
     7261 tatttcatcg tctttaataa aataatatgc catctttcca tctttataaa aatcaagtac
     7321 ctcattttta tataaaagcc ttaaatgatg tgaagttgaa gcaacactca ttttcaatat
     7381 caaagaaata tcacaaacac acaactcatc ttctttaatc aaagataata tgattttcaa
     7441 tttcttctca tcacaaattt tttctaaaat gttaagtaat ttcttagatt tatcatcttc
     7501 taaaaaactt aaagcattgt taactttatc ctcatgtaca cagatcacat cacaagtatt
     7561 ttcataactc atataaaatc acaccctaaa ttaaaatata aatcctaaaa ttgtttgaat
     7621 agtgtcattt tcaataataa taaataaacc taaagctata taaataatag ccataatcca
     7681 acgactaaat ttctcaacaa tttctccaat tcctggaata ttagctaatt tttgtgcagt
     7741 aaacaccaag aagaaaatta aaattaaaaa gacaaacaga gtaagtaata aattagtaac
     7801 acttaatgtc acaaaatacg gaacaaataa accaatatta tcggcgccac aacttgctat
     7861 cgtaacaatt gcaaccgtac caactaattt agacaatcct ttttcattca attctttttt
     7921 agctctcttt tctccttcac aatcatcata aatagccact ttaattccaa gataaattgg
     7981 tattaaaccc aataaaccta atatccactt ttctggaaca taatttaata caaaagctaa
     8041 aaacaaacta actaatatta aaataataga ccctaaatat tgaccaacat aaatatctct
     8101 atattctttt ctagtctttg ctctagcaaa aaatattaat aaaattacta ataaatcaac
     8161 tgctgtagca atataaagaa cagcagcagc aacaaccgtt tgaatcataa tacacctcat
     8221 tcaaaaatat ttttgaatgt attataactt atatttttaa ataatcatag gtg
//
LOCUS       DAMQWL010000101         8076 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.102, whole genome shotgun sequence.
ACCESSION   DAMQWL010000101 DAMQWL010000000
VERSION     DAMQWL010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 8076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8076
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.102"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            127..942
                     /locus_tag="PF788_002134"
     CDS             127..942
                     /locus_tag="PF788_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002491360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase"
                     /protein_id="HDG6304382.1"
                     /translation="MHYIKFIESKDNTKLYMKVNDIQDAKANIIIAHGVAEHLDRYDE
                     ITAYLNEAGFSVIRYDQRGHGRSEGKRAFYSNSNEIVEDLDAIINYVKSNFEGKVYLI
                     GHSMGGYTVTLYGTKHPNTVNGIITSGALTRYNNKLFGNPDRNISPDTYIENNLSEGV
                     CSDLEVMEKYKLDDLNAKQISMGLVFSIMDGVRYLKDNAQQFTDNILILHGKEDGLVS
                     YVDSLQLYQEIGSAHKSLHIYDRLEHEIFNESSYNRTIFNEVIEWLETELTYN"
     gene            1264..2442
                     /locus_tag="PF788_002135"
     CDS             1264..2442
                     /locus_tag="PF788_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016913246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HDG6304383.1"
                     /translation="MSKRSSVVAHYKNGKFQKEFFIQNNKNGYNYLLKYLNDLDHPQL
                     IFESTGIYSRGMERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTL
                     KQTGSLPIHELIFFELRERARFHLEIENEQNRLKFQILELLHQTFPGLERLFSSRYSI
                     IALNIAEIFTHPDVVLDIDKDVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNV
                     DRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMI
                     IGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNII
                     RGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
                     "
     gene            2702..3394
                     /locus_tag="PF788_002136"
     CDS             2702..3394
                     /locus_tag="PF788_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002490836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDG6304384.1"
                     /translation="MTKTYDVWWQKGQESDDDMARDHQEAWERTIKMLDTSDIEGKTI
                     LDVGCNQGGFLRQLYDTTPFKKGVGIDLARLSLEKAETLKGQRPLTYYLTDKPQETKH
                     VFDTAVSTSVLYLIEDIPQHAKDLKEVLKPGGVYYASFADLTNNPSRQFMDDTINQYG
                     ATPSQNHSLKHIVDSFVDAGFEVAVMKEHVPDVIDLTHYSDFYLSPNDYLQTLYEESF
                     LIKASVKEGTEK"
     gene            3391..4944
                     /locus_tag="PF788_002137"
     CDS             3391..4944
                     /locus_tag="PF788_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000747558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6304385.1"
                     /translation="MRKCVLMTVAASATLLLAGCGNGQKEDKDVTVSLPTEAKADKLD
                     AQGYDAAMPVYSAVYDALVKYDKDKGIKAGLADKWSVDESGKVYEFHLKKNVKFSDGS
                     ALDAKDVKFSIDRAKAMNKDSTVETLKKLDKVVVKNEHVVQIRLKSPSNQVLNELTQV
                     RPLRIMSPHSVEDGKVNGKFEKAIGTGAFVVDKTGKEKTTMKPNKYFDNGHPVNYHLA
                     FQTIEDGDSRNSAVQSGSVDISGGALGMLSDEQIKQDKKNKNLTIEDRPSTVSHFMAF
                     NPKNDVLNQRTIREAISKSIDAKDIAGKSVNGLFQKNVQFVTKNNQQPHDYDMKAAER
                     LLKSEGYHKNDDGIFEKNGKPLSFNLVIQTAEFPNWKDKAEKVQRQLKQAGIKLNVKT
                     LDSQSYYDTLWTKKDYDLIFYRTYSDALMPYNFISSVFKNNDGQPGVLADDETLTKQL
                     DDFPSTVSKEDQQCSFDDIFKHFNQQYYGVPIAYPNETFVVSDKVKQFKFSGLTDAPI
                     DYKALKVNE"
     gene            4947..5903
                     /locus_tag="PF788_002138"
     CDS             4947..5903
                     /locus_tag="PF788_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304386.1"
                     /translation="MLKRTIKFILYLIVSSFIIFILVEKTSGNPAILYLQRHGYTSIT
                     QDNIEAAQHQLGLGQHVLLRYIDWVGHALTGNLGYGFSTNEAVTAMIMEAIVPTLVLI
                     IVSSCIMLPFGYIVGYFVGTRPHTRYANGIRGFAQVMTSMPEYWLAILFIYYLGVRWQ
                     LLPFVGSDSWQHFVLPIFTIVVIEGCHILLMTAHLITQTLDQDAYQLAQLRHFSLKAR
                     IIVQIKEIFAPLMTISINSIIHLIGKAVILEVIFSMSGIGKLLINAINQRDYPLIQGI
                     VIFIIVFIMLMNYLGDVIILKNEPRLRRRHTQQSGNEKRGTM"
     gene            5903..6670
                     /locus_tag="PF788_002139"
     CDS             5903..6670
                     /locus_tag="PF788_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002469402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304387.1"
                     /translation="MKKYQTYIAIGSLLSLMVVLITYGLMQDTQHLNPLESPNGQHWL
                     GTDQLGRDFLVRLIVGSLVTLSLTGIVILLSVCMGLIFGLIAGIERRWLDQIIMFVAD
                     MLLAIPSFIIALVILSLVSNSMIGLILALTIGWIGRYLRYFRNLTRDIQKRPFVQYAR
                     LSGNSTFKTTVTHVIPHLLSSIFALVTADFGKMMLSISGLAFLGLGIKPPTPELGTIL
                     FDGKSYFNGAPWLFFFPGVLLGGFALLCQIINKKITQ"
     gene            6637..7404
                     /locus_tag="PF788_002140"
     CDS             6637..7404
                     /locus_tag="PF788_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002504387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6304388.1"
                     /translation="MSNYQQKNNAVNTVVNVNQLSILDQEKVLLKDVDLTVTKGAFHC
                     IIGESGSGKSLLTRTILGMKQSQLCYQGDIDIDLTQTDAVFQDVQSNMFQNITLAKHF
                     QYIYEANRTHLTKQRIKEDVLQMMQLLGLRQGEQLLERYPFELSGGMAQRVAFIMSLI
                     RRPNYLFLDEPTSALDQENIKKFMHYLLRAQERYQMTIVFITHDINLVKDCATHISIM
                     QQGKLIENGEAASILTKPTHNYTKKLITIAHRRQPYA"
     gene            7397..8032
                     /locus_tag="PF788_002141"
     CDS             7397..8032
                     /locus_tag="PF788_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002490830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDG6304389.1"
                     /translation="MLKIERLTKYIDTQLIFKEISCTINDQHLLISGESGCGKSTLAK
                     IIAGLDTDYQGELYLNGRLRESYTSKEWMKHIQYVPQYQRDTLNQRKTVLATLLEPLK
                     NYKVNKQRYTSSIEAVLDQCNLPHDILNHKVSTLSGGQFQRVWIAKALILEPEILILD
                     EATTNLDVINEEAILQMLISLKMTQLIIISHDTYVLSQFEGIQLQLNKLNN"
BASE COUNT         2842 a         1247 c         1540 g         2447 t
ORIGIN      
        1 taaaaaacat gggcttaaag ggttaattta tatagtatta ctgcaaacat tgatttgggt
       61 caaaaattag gggtattaaa aaaatgaatg aatcataatt ttatcaagct gattggagag
      121 gttaaaatgc attatataaa atttattgag tcaaaagata atacaaaact ttatatgaaa
      181 gtgaatgata ttcaagatgc aaaagcgaat atcattatag ctcatggtgt ggcagaacat
      241 ttagatcgtt atgatgagat aacagcatat ttaaatgaag cgggttttag tgttattaga
      301 tatgatcaaa gagggcatgg tcgttctgaa ggcaagcgtg ccttttatag caatagtaat
      361 gaaattgtcg aagatttaga tgcgataata aattatgtga agtcaaactt tgaaggtaaa
      421 gtttacttaa tcggtcatag tatgggtggt tatacagtca ctttatatgg aacgaaacat
      481 ccaaatacag tgaatggtat tataacttct ggagcattaa cacgttataa taataaacta
      541 tttggcaatc ctgatagaaa catatcacct gatacttata tagaaaacaa tttaagtgag
      601 ggggtatgtt ctgatttaga ggtaatggaa aaatataaac ttgatgattt gaatgcgaaa
      661 caaatctcta tggggctcgt cttttcaata atggatggtg ttaggtattt gaaagacaat
      721 gctcaacaat ttacagataa tattttgata ttgcatggca aggaagatgg gctagtaagc
      781 tatgtagatt ctttacagct ttatcaagaa ataggatcag cacataaatc attacacatc
      841 tatgatcgtt tggagcatga aatatttaat gaaagttctt ataatagaac tatttttaac
      901 gaagttattg aatggcttga aacggaatta acttataact aaaacagtat agttccgtgt
      961 atttgattat aagaaattat gaggatatta aacatactaa gattagctat gaagaaatct
     1021 atgacgatag attttttcat agctattttt tatagttata gagaggagta gactgtccag
     1081 actcttggat tttaaatccg taaaaaaaac aagtcagctt tactctcacc ttttgaaatt
     1141 cgtttgtagt atgttgggtt cttgaaaccg tgtataggaa aatgaaatga gaaaggttaa
     1201 gtaaagtttt tagcttctca actattcaaa ggaggttttt ttatcgatta cttaggtgtt
     1261 gatattagta aaaggagtag tgtagttgca cattataaaa atggaaaatt ccaaaaagag
     1321 tttttcatcc aaaataataa aaatggctac aattatttac tcaagtattt gaatgactta
     1381 gaccacccac aactcatttt tgaatctaca ggtatctatt caagaggtat ggaacgattt
     1441 tgttgtgtaa atcaaattaa ctatattcaa atgaatccgt tagaagccaa atttaaaacg
     1501 agcgctctaa gatcatggaa aactgatcag gcagatgctc ataagcttgc ttgtttagga
     1561 ccgacgctca aacaaacagg cagcttacct atacatgagt taatattctt tgaattaaga
     1621 gaacgtgccc gttttcatct agaaatcgag aatgaacaaa atcgacttaa atttcagatt
     1681 cttgaattac tccatcaaac attccctggt ttagaaagat tatttagtag tcgatattca
     1741 atcattgcac tcaacatcgc agaaattttt actcatccag acgtggttct tgatatcgac
     1801 aaggatgtac ttattacaca tatattcaat tctacagata agggaatgtc aatggataaa
     1861 gctacaaaat atgcacttca attaagagtg attgctcaag aaagctatcc taatgtcgat
     1921 agacattcct ttctagtcga aaaattacgc ttacttattc aacaattaaa acaatctatt
     1981 catcatctca aacaattaga tgatgccatg attcaattag cacaacaact cgattatttt
     2041 gaaaatattc attcgatacc tggtattggt aagctaagca cagctatgat tattggggag
     2101 attggtgata ttaagcgatt taaatcaaat aaacaactca acgcttttgt aggcattgat
     2161 atcaaacgat atcaatcagg tcatacacac tgtagagata ccatcaacaa gcgtggtaat
     2221 aaaaaagcga gaaaactttt attttgggtg attatgaata taataagagg gcagcatcat
     2281 tatgacaatc atgtcgtcga ttattactac aaactaagaa agcagcctaa tgagaaacct
     2341 cataagactg ccatcattgc ttgtataaat cgattattaa aaacgattca ttatctggta
     2401 atgaatcata aattgtacga ttatcaaatg tcaccacatt agccaaacgt acaattaaat
     2461 atattttaat accttattca aaaaattaaa atgaacggtt tagttaagta atgcttattt
     2521 taattataag tacttgacta atcgtaagaa agagcctagg acataaatca atgtctcgcg
     2581 accacagctt aatttttggt gttcattcat gactttaaaa aatccttatt gcataaatgt
     2641 acatagtgta gtactattca aaacgtaatt attacgattt gaattaagcg aggagaatga
     2701 aatgactaag acttatgacg tttggtggca aaaaggtcaa gaatcagatg atgatatggc
     2761 acgagaccat caagaagctt gggagagaac aataaaaatg cttgatacat ctgacatcga
     2821 agggaaaacg attttagatg tgggatgtaa tcaaggcgga tttttacgac agttatacga
     2881 tacaacaccg tttaaaaaag gtgttggcat agatttagca cgtttatctt tggaaaaggc
     2941 agagacatta aaaggacaac gtccacttac atactattta acagataaac cgcaagaaac
     3001 gaagcacgtg tttgatacgg cagtaagtac gtctgtcttg tacttaatag aagatattcc
     3061 gcaacatgca aaagatttaa aagaggtatt gaaaccaggc ggtgtttatt acgcttcatt
     3121 cgcggattta actaataacc caagtcgtca gtttatggat gacacgatta atcaatatgg
     3181 tgcaacacct tctcagaatc actctctaaa acatatcgtt gatagctttg tggatgcagg
     3241 atttgaagtt gcagtaatga aagagcatgt acctgacgtg attgatttaa cacattatag
     3301 cgatttttat ttatcaccga atgattattt acaaacacta tatgaagaat cgtttttaat
     3361 aaaagcaagt gtgaaagaag gtactgagaa atgaggaaat gtgtattaat gacggtagca
     3421 gcaagtgcta cgctcttatt ggcaggttgt ggcaatggtc aaaaagaaga taaagatgtt
     3481 acggtatcgc tacctactga agcaaaggcg gataaacttg acgcgcaagg ctatgatgca
     3541 gcgatgcccg tttatagtgc agtgtatgat gcattagtta aatatgataa agataagggt
     3601 attaaagcag gtttagcaga taaatggagc gttgatgaat cagggaaagt ttatgaattc
     3661 catttgaaaa agaatgttaa attctcagat ggttcagcat tagatgctaa ggacgtgaaa
     3721 ttctcgattg atcgtgcgaa agcgatgaac aaagattcga ctgtagaaac gttaaaaaaa
     3781 ttagataagg tcgttgttaa aaatgagcac gtggtccaaa ttagattgaa atctccttca
     3841 aatcaagtgt taaatgaatt aacacaagtg agaccgttgc gtattatgag tccacattca
     3901 gtagaagatg gtaaagtaaa cggtaaattt gaaaaagcga ttggaacagg tgcatttgtt
     3961 gttgataaaa ctggtaaaga aaaaacgaca atgaagccaa ataaatattt tgacaacggt
     4021 cacccagtca attatcatct tgcattccaa acgattgaag atggggactc aagaaattct
     4081 gcagtacaaa gtggttctgt agatatttct ggtggtgctt taggtatgct ctcagacgaa
     4141 caaatcaaac aagataagaa aaataagaac ttaacgattg aagatagacc tagcacagta
     4201 agtcacttta tggcatttaa ccctaaaaat gatgtattaa atcaacgcac aattcgtgaa
     4261 gcgataagta agagcatcga tgcgaaagac attgcgggca aatctgtaaa tggtctgttc
     4321 cagaagaacg tacaatttgt gactaaaaat aatcaacagc cacacgatta tgatatgaaa
     4381 gcggctgaaa ggttacttaa atcagaagga tatcataaaa acgatgacgg catctttgaa
     4441 aagaatggca aacctttatc atttaactta gtcattcaaa ctgcagagtt cccaaattgg
     4501 aaagataaag ctgaaaaagt gcaacgtcag cttaaacaag ccggtattaa gttaaatgtg
     4561 aaaacgttag attcacaatc atactatgat acattatgga cgaaaaaaga ctatgatttg
     4621 attttctata gaacgtattc agatgcatta atgccttaca actttataag ttcagtgttt
     4681 aaaaataatg atggtcaacc aggggtgtta gctgatgatg aaacattaac gaaacagcta
     4741 gacgatttcc catcaaccgt atcaaaagaa gaccaacagt gttcatttga tgacatattt
     4801 aaacacttta atcaacaata ctatggtgtg ccaattgctt atccaaatga gacgtttgta
     4861 gtgagtgata aagtaaaaca attcaaattc tctggactta cggatgcacc aattgattat
     4921 aaagcgttga aagttaatga atagcaatgc tcaaacgtac aattaaattc atactttatt
     4981 taatcgtaag ttcgtttatt atcttcattt tagttgagaa gacatctggt aatccagcga
     5041 ttctgtatct acaacgtcat ggttatacgt cgattacgca agacaatatt gaagcggcac
     5101 aacatcaact tggcttagga caacatgtgt tactaagata tatcgattgg gttggacatg
     5161 cactcacggg caacttagga tacggcttta gtacgaacga agcagttacc gctatgataa
     5221 tggaagccat cgtgccgacg cttgtgctaa tcattgtctc tagttgtatc atgttgccat
     5281 ttggctatat tgttggttac ttcgttggga cgcgtccgca tacacgttac gctaatggaa
     5341 ttcgtggatt cgcccaagtg atgacctcaa tgccagaata ctggttagct attttattca
     5401 tttattattt aggcgtacgt tggcaattgt taccatttgt aggtagtgat tcatggcaac
     5461 actttgtgct gccaatcttc acaattgttg ttatagaagg gtgtcatatc ttattgatga
     5521 cagcacatct gattacacaa acgttagatc aagatgcgta tcaactggcg cagttaagac
     5581 atttttcgtt aaaagcgcgt atcatcgtac aaattaaaga gatatttgca ccactaatga
     5641 cgatttcaat taacagtatc attcatttaa ttggaaaagc cgtaatacta gaagtcatct
     5701 tcagcatgtc tggtataggt aaattgttga ttaatgctat taaccaacga gattatccac
     5761 tgattcaggg cattgtcatc tttatcattg tctttattat gctaatgaat tatttaggcg
     5821 atgtgattat tttgaagaat gaacctagac ttcgacgacg tcatacccag cagtcaggca
     5881 atgagaaaag aggtacgatg tgatgaaaaa atatcaaacg tacatcgcaa taggttcact
     5941 attgagtttg atggttgtat taattacgta tggtttaatg caagacacgc aacatttgaa
     6001 cccacttgag tcacctaatg gacaacattg gttgggtacc gatcaattag gcagagactt
     6061 cttagtaaga ctgattgtcg gtagtcttgt cacattgagt ttaacaggca tagtgattct
     6121 attaagcgtt tgtatgggac ttatctttgg cttaattgca ggcatagaaa gacgatggtt
     6181 agatcaaatc atcatgtttg ttgccgatat gttgctggct attccgtcat ttattatcgc
     6241 attagtcatc ttaagtttag taagtaactc catgataggt ttgatacttg ctttaacgat
     6301 tggatggata ggacgttatt tacgttactt cagaaattta acgcgagata ttcaaaaacg
     6361 tccatttgtt caatatgcac gattgagtgg gaactcaaca ttcaaaacga cagtaacaca
     6421 tgtgattcca catttattaa gtagtatatt cgctttggta acggctgact ttggcaaaat
     6481 gatgctcagc atatctggac ttgcttttct aggactaggt attaaaccgc cgacgcctga
     6541 gttaggaaca attctttttg atgggaaaag ttatttcaac ggcgcaccgt ggctcttctt
     6601 cttccctggt gtattgttag gaggtttcgc cttattatgt caaattatca acaaaaaaat
     6661 aacgcagtaa atacggtagt caacgtcaat caattatcga ttttagatca agagaaagta
     6721 ttgttaaagg atgttgattt gacagtaact aaaggtgcat ttcattgcat tataggtgaa
     6781 agtggcagtg ggaaatcact gttaacaaga acaatacttg gaatgaaaca atcacaatta
     6841 tgttatcaag gagatattga catcgattta actcaaacag atgcagtgtt tcaagatgtt
     6901 caaagtaata tgtttcaaaa tataacatta gctaagcatt tccaatacat ttatgaagcc
     6961 aatcgcacac atctcactaa acagcgtatt aaggaagatg tcttacagat gatgcaatta
     7021 cttggtttaa gacaagggga acaattgctt gagcgttatc ccttcgaact tagtggaggt
     7081 atggcacaac gtgtcgcctt tataatgtca ttaattagac gtccgaacta cttattttta
     7141 gatgaaccaa cgagtgcact tgatcaagaa aatattaaaa agtttatgca ttaccttctt
     7201 agggcacagg agcgctacca aatgaccatt gtttttatca cacatgatat taacttagtg
     7261 aaagattgtg ccacacatat tagtattatg cagcaaggta aattgataga aaatggtgag
     7321 gccgcgtcga tcttaactaa gccgacacat aattacacga aaaaattaat tacgattgca
     7381 catcggagac aaccttatgc ttaaaataga gagattaacc aaatatatag acacgcaact
     7441 gatatttaaa gagatatcat gtacaattaa cgaccagcac ttactcataa gtggggagag
     7501 tggttgtggt aaatccacat tagccaagat tatcgctggc ttagatacgg attatcaggg
     7561 cgaattatat cttaatgggc gcttacgtga atcttatacg tctaaagagt ggatgaagca
     7621 catccaatat gtacctcaat atcaacgtga tactttaaat cagcgtaaaa cggtattagc
     7681 tacattatta gaaccactta agaattataa ggtaaataaa cagcgttata catcaagcat
     7741 tgaagcagtg cttgatcagt gtaatttacc acacgatata cttaatcata aagtttcgac
     7801 attaagtggt ggccaatttc aacgcgtctg gatagctaaa gctttaatat tagaaccaga
     7861 gattctcata ttggatgaag ctacaaccaa cttagatgtc attaatgaag aagctatact
     7921 tcaaatgttg atttccttaa agatgacaca attaatcatt atttcacatg atacatacgt
     7981 cttaagccaa tttgaaggaa ttcagttaca gctaaataaa ttgaataatt aagatcacaa
     8041 atcttaatat ggtgaatatt taatggtacc taaaaa
//
LOCUS       DAMQWL010000102         7934 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.103, whole genome shotgun sequence.
ACCESSION   DAMQWL010000102 DAMQWL010000000
VERSION     DAMQWL010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7934
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.103"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            371..772
                     /locus_tag="PF788_002142"
     CDS             371..772
                     /locus_tag="PF788_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDG6304390.1"
                     /translation="MDIPKITTFLMFNNQAEEAVKLYTSLFEDSEIITMAKYGENGPG
                     DPGTVQHSIFTLNGQVFMAIDANSGTELPMNPAISLFVTVKDTIEMERLFNGLKDEGA
                     ILMPKTNMPPYREFAWVQDKFGVSFQLALPE"
     gene            complement(1035..2732)
                     /locus_tag="PF788_002143"
     CDS             complement(1035..2732)
                     /locus_tag="PF788_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HDG6304391.1"
                     /translation="MAYDGLFTKKMVESLQFLTTGRVHKINQPDNDTILMVVRQNRQN
                     HQLLLSIHPNFSRLQLTTKKYDNPFNPPMFARVFRKHLEGGIIESIKQIGNDRRIEID
                     IKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKIIEGFKHLTPNTNHYRTVMPGFNY
                     EAPPTQHKINPYDITGAEVLKYIDFNAGNIAKQLLNQFEGFSPLITNEIVSRRQFITS
                     STLPEAFDEVMAETKLPPTPIFHKNHETGKEDFYFIKLNQFNDDTVTYDSLNDLLDRF
                     YDARGERERVKQRANDLVRFVQQQLYKYQNKLAKLIEEYEQSKNKDTEQLYGELITAN
                     IYRIKQGDKEVTALNYYTNEEVVIPLNPTKSPSANAQYYYKQYNRMKTRERELQHQIQ
                     LTKDNIDYFSTIEQQLHHISVHDIDEIRDELAEQGFMKQRKNQTKKKKAQIQLQHYVS
                     TDGDDIYVGKNNKQNDYLTNKKAKKTHTWLHTKDIPGSHVVIFNDAPSDTTIKEAAML
                     AGYFSKAGNSGQIPVDYTLIKNVHKPSGAKPGFVTYDNQKTLYATPDYELIQKMKQS"
     gene            3007..3630
                     /gene="gmk"
                     /locus_tag="PF788_002144"
     CDS             3007..3630
                     /gene="gmk"
                     /locus_tag="PF788_002144"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDG6304392.1"
                     /translation="MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQ
                     MREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFL
                     EIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEM
                     MNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAKYRKMILEAKK"
     gene            3630..3848
                     /locus_tag="PF788_002145"
     CDS             3630..3848
                     /locus_tag="PF788_002145"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDG6304393.1"
                     /translation="MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHS
                     FKPVGRALEEIADGKIRPVISSDYYGKE"
     gene            4064..5263
                     /gene="coaBC"
                     /locus_tag="PF788_002146"
     CDS             4064..5263
                     /gene="coaBC"
                     /locus_tag="PF788_002146"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDG6304394.1"
                     /translation="MKKILLAVTGGIAAYKAIDLTSKLTQSGYEVRVMLTNHAQKFVT
                     PLAFQAISRNAVYTDTFIEENPSEIQHIALGDWADAIIVAPATANTIAKLSVGIADDL
                     VTSTLLATETPKFIAPAMNVHMYENKRTQQNINILKEDGYHFIEPGSGFLACGYVAKG
                     RMEEPLQIVSVIDAHFQNSNRLANSSFQDKRALVTAGPTIEVIDPVRFVSNRSSGKMG
                     YAIAEALRNRGAIVTLVAGPTTLEDPKDIEVIHVQSAEEMFEQVTSRFDEQDIVVKAA
                     AVSDYTPVDVLEHKMKKQDGDLSVSFKRTKDILKYLGEHKTSQYLIGFAAETEDIENY
                     AQQKLRKKNADVIISNNVGDMSIGFSSDDNELTMHFKNNEKVNIKKGKKVVLAAQILD
                     ELETRWQ"
     gene            5263..7671
                     /gene="priA"
                     /locus_tag="PF788_002147"
     CDS             5263..7671
                     /gene="priA"
                     /locus_tag="PF788_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDG6304395.1"
                     /translation="MIAKVIVDVASKSVDYKFDYIIPEQLESVIQPGVRVIVPFGPRT
                     IQGYVMEVTAEPDAQLDVSKLKKIIEVKDIQPELTSELIALSEWMGSTHVIKRISMLE
                     VMLPSAIKAKYKKAFKMKDDIELPSALLQKFDKHGYYYYKDAQKNNDIQLLMKLLKDD
                     IVEEKTILTQNITKKTKRAVRVIEGYHPDEVLAKLEKVIKQYDLYAYLSEEQHKTIFL
                     TDIEDMGFSKSSLDGLIKKGYVEKYDAVVERDPFKDRVFEQESKQQLTEDQYKAYEAI
                     KAKIVSQEQETFLLHGVTGSGKTEVYLQTIEDVLSQGKQAMMLVPEIALTPQMVLRFK
                     RRFGDDVAVLHSGLSNGERYDEWQKIRDGRARVSVGARSSVFAPFKNLGLIIIDEEHE
                     STYKQEDYPRYHAREIAQWRSEYHHCPVILGSATPCLESYARAEKGVYHLLSLPNRVN
                     QQALPEIDIVDMREELSEGNRSMFSKDLREAIQLRLDRQEQVVLFLNRRGYASFMLCR
                     DCGYVPQCPNCDISLTYHKTTDLLKCHYCGYQETPPNQCPNCESEHIRQVGTGTQKVE
                     ELLQQEFEDARIIRMDVDTTSKKGAHEKLLTEFEKGNGDILLGTQMIAKGLDYPNITL
                     VGVLNADTMLNLPDFRASERTYQLLTQVAGRAGRHEKAGQVIIQTYNPDHYSILDVQK
                     NDYLTFYRQEMEYRKLGKYPPYYYLINFTISHKEMKKVMVASQHVHKILLQHLTEKAL
                     VLGPSPAALARINNEFRFQILVKYKSEPGLLQAIQFLDDYYHEKFIKEKLALKIDIDP
                     QMMM"
BASE COUNT         2770 a         1150 c         1441 g         2573 t
ORIGIN      
        1 tagcttttat tatataaaaa atttattagc ggataattaa ctttattaaa atccaaccaa
       61 ttaagaatac gagtaatagg actaatactg gaatcacata atgtaacata acgtccctcc
      121 tttaacttaa ttttaattgt aatcaaattt gacaataagt caaaacatta atacctatga
      181 taagtatcat ttattaacat atgtatcata tttttaatct tgcgtaattt ttatcgttaa
      241 ctatgtgatt taatcaacag gccaataaga cgtttgtcat tcgtgcacat aacggtacga
      301 cgcgcttttg tcattttaat tatgttaaga taatagtagt tatagaagtt caatctatag
      361 gaggcatagc atggatattc caaaaatcac gacattttta atgtttaata accaagctga
      421 agaagctgtt aaactataca caagcttatt tgaagatagt gagattataa caatggctaa
      481 gtatggtgaa aatggacctg gtgatcccgg gactgtacaa cactcaatat ttacattaaa
      541 tggacaagta ttcatggcga ttgatgctaa tagtggcaca gaattaccaa tgaatcctgc
      601 gatttcatta tttgttacag taaaagatac tattgaaatg gaacgactat ttaatggatt
      661 aaaagatgaa ggtgccattt taatgccaaa aacgaatatg ccaccataca gagagtttgc
      721 ttgggttcaa gataagtttg gagtaagttt tcaattagca ttacctgagt aaaaggattc
      781 gcacagcgtt gaatgataaa gaaacacttt ttcttatgca tgcgttttac ctatgtattt
      841 ctattttaag tacacattag cattttagtt tcactcattt ttaaaatcac aaagataatt
      901 tgtaacttaa atgatgatac gttatttaaa aacacgatac ttcgtttcaa tgaacgcatt
      961 aaataataaa taaacacctc accataagaa aggactactt tcttttgtga ggtgtttatt
     1021 tgtcgacaac ttgattatga ttgtttcatt ttttgaataa gttcataatc aggtgtagca
     1081 tacaaagttt tttgattgtc atatgttaca aacccaggct ttgcacctga tggtttatgc
     1141 acatttttaa ttaatgtata atcaacaggt atttgtccag aattaccagc ttttgaaaag
     1201 tatcctgcta acatagccgc ttccttgatt gtcgtatcac ttggtgcatc attaaatata
     1261 acgacatgtg aaccaggaat atcttttgtg tgtaaccatg tgtgagtttt tttagctttt
     1321 ttatttgtta aataatcatt ttgcttgtta ttcttaccaa catatatatc gtcgccatca
     1381 gttgatacat aatgttgtaa ttgaatctgc gctttctttt tcttagtttg atttttacgc
     1441 tgtttcataa agccttgttc tgctaattca tctctaattt catcaatgtc atggacagaa
     1501 atatgatgta attgttgttc gattgttgaa aaataatcta tattgtcttt cgtcaattga
     1561 atttgatgtt gtaattcacg ttctctcgtt ttcatacgat tatattgttt ataataatat
     1621 tgagcatttg ctgatgggga ttttgtagga tttaaaggaa tgacaacttc ttcattcgta
     1681 taataattca atgccgtcac ttctttatcg ccttgcttaa ttcgatatat attagcagtg
     1741 atcaattcac catataactg ttcagtatct ttatttttag actgctcata ttcttcaatc
     1801 aacttcgcta atttattttg atatttgtac aactgctgtt gaacaaatcg aactaaatca
     1861 ttcgcacgtt gtttaacgcg ttcacgttcg ccacgcgcat cataaaaacg atcaagcaaa
     1921 tcatttaatg aatcgtatgt aactgtatca tcattaaatt gatttaactt tataaaatag
     1981 aaatcctctt tacctgtttc atgattttta tgaaaaatag gagtaggtgg taacttggtt
     2041 tctgccatta cttcgtcaaa tgcttctggt aatgttgatg aagtaataaa ttgacgacga
     2101 ctaacgattt cattcgtaat taaagggcta aatccttcaa actgattcaa taattgttta
     2161 gcaatattac ctgcgttaaa atcgatatat ttcaacacct ctgcacctgt aatatcatac
     2221 ggatttattt tgtgctgagt aggtggtgct tcataattaa atcctggcat tactgtacga
     2281 tagtgattcg tatttggtgt taagtgttta aatccttcaa ttattttgcg attttcatct
     2341 actaaaatta agttactatg tttacccata atctcaagga tgacagtgcg gtaaatagta
     2401 tcgccaattt catctttact ctttatatcg atttcaatgc gacgatcatt accaatttgc
     2461 ttaatcgatt cgataatacc accttctaag tgttttctaa aaacacgcgc aaacatgggt
     2521 ggattaaatg gattatcata ttttttagta gtcaattgta atcttgaaaa gtttggatgg
     2581 attgacaata acaattgatg gttttgtcta ttttgacgta caaccattag tatcgtgtca
     2641 ttatcaggtt gattgatttt gtgaacgcgt cctgttgtta aaaattgtag agactcaacc
     2701 attttctttg taaataagcc atcataagcc ataatttatc ttccaccttc ttcatatcat
     2761 tcgtttcatt ttaacatgat tgtaactttt cagtatagtt attgaaccat acattatgcc
     2821 atacatttta cattatctaa aagtttgcaa ttcaatttat ttaattaaaa ttaatcgtgc
     2881 aatataacga tattgttaga cttaatagaa attatggcat gcaatttcaa atatgctata
     2941 caatataaag aacaatgtga tatcatattt aaataataga agattagctt agagaggtcg
     3001 taaggcatgg ataatgaaaa aggattgtta atcgttttat caggaccatc tggagtaggt
     3061 aaaggtactg ttagaaaacg aatatttgaa gatccaagta catcatataa gtattctatt
     3121 tcaatgacaa cacgtcaaat gcgtgaaggt gaagttgatg gcgtagatta cttttttaaa
     3181 actagggatg cgtttgaagc tttaatcaaa gatgaccaat ttatagaata tgctgaatat
     3241 gtaggcaact attatggtac accagttcaa tatgttaaag atacaatgga cgaaggtcat
     3301 gatgtatttt tagaaattga agtagaaggt gcaaagcaag ttagaaagaa atttccagat
     3361 gcgctattta ttttcttagc acctccaagt ttagaacact tgagagagcg attagtaggt
     3421 agaggaacag aatctgatga gaaaatacaa agtcgtatta acgaagcgcg taaagaagtt
     3481 gaaatgatga atttatacga ttacgttgta gttaatgatg aagtagaact tgcgaagaat
     3541 agaattcaat gtattgtaga agctgagcac ttaaaaagag agcgcgtaga agctaagtat
     3601 agaaaaatga ttttggaggc taaaaaataa tgttaaatcc acctttaaac caattaacgt
     3661 cacaaattaa atcaaagtat ttaattgcaa caactgcagc gaaaagagcg cgtgaaattg
     3721 atgaacaacc tgaaactgaa ttattaagtg aatatcattc atttaaacca gttggtagag
     3781 cgttagaaga aattgctgac ggtaaaattc gccctgttat ttcaagtgat tattatggta
     3841 aagaatagtt tcgaccatta aaaatatgtg aagctagacg tacatcaaat acgtcaaggc
     3901 atatccaaat caaacgcacc tatgtaggtg tgttttttta gtttatccaa tgattgatgt
     3961 tataataata ctaaatttgt atctataaaa aagtaatgag catttgtgcg catatgatga
     4021 tgtaaagcgt aaatgtcata gtgatattta agggagattg aatatgaaga aaatattatt
     4081 agccgttaca ggtggcattg cggcatataa agcaattgat ttgacaagta agttaacaca
     4141 atctgggtat gaagttcgcg ttatgttaac gaatcacgca caaaaatttg tgacaccatt
     4201 agcatttcaa gcaataagtc gaaatgctgt ttatacagat acttttatag aagaaaatcc
     4261 ttcagaaata cagcatattg cattaggtga ttgggcagat gcaatcattg ttgcacctgc
     4321 aacggcaaat acaattgcaa aattgagtgt aggtattgct gatgatttgg tgacatcaac
     4381 gttgctagca acagagacac cgaaatttat tgcgcctgct atgaatgtgc atatgtatga
     4441 aaataaacgt acgcagcaaa atattaatat tttaaaagaa gatgggtatc attttatcga
     4501 accaggaagc ggatttctag catgtggtta tgttgctaaa ggacgtatgg aagaaccgct
     4561 tcaaatcgtt tctgtaattg atgctcattt tcaaaatagt aatcgtttag ctaatagttc
     4621 atttcaagat aaacgcgcat tggttacagc aggaccaact attgaagtta tcgatccagt
     4681 cagatttgta tccaatcgtt cttctggaaa aatgggctat gcaatagctg aagcattgcg
     4741 aaatcgagga gctatcgtga cgttagttgc tggtcctaca acactagagg atccaaaaga
     4801 tattgaagtt attcatgttc aaagtgctga agaaatgttt gaacaagtga caagccgatt
     4861 tgacgaacaa gatattgttg taaaagcagc agccgtatct gactatacac cggttgatgt
     4921 attagaacat aagatgaaaa agcaggatgg tgatttgtca gtatctttta aacgtactaa
     4981 agacattctt aaatatttag gtgaacataa aacatcacag tatttaatag gctttgcagc
     5041 agagactgaa gatattgaaa attatgcaca acaaaaatta cgcaagaaaa atgcagatgt
     5101 gattatttca aataatgttg gggatatgtc tatcggattt agttctgatg ataatgaatt
     5161 gacaatgcat tttaaaaata atgaaaaagt aaatatcaag aaaggaaaaa aagtagtatt
     5221 agctgcacaa attttagatg aactagaaac taggtggcaa taatgatagc gaaagtcata
     5281 gtcgatgtcg cgtcgaagag cgttgactat aaatttgatt atataattcc cgaacaactc
     5341 gaatctgtca tccaacctgg tgtgcgtgta attgtacctt ttggaccaag aacgattcaa
     5401 ggttatgtaa tggaagtaac agcagaacct gatgcacaac ttgacgtttc gaagttaaaa
     5461 aaaatcatag aagtgaaaga tatacaacca gaattaacat cagaattaat agctttaagt
     5521 gagtggatgg gttcaactca tgtcattaaa cgtatttcta tgctagaagt gatgcttccg
     5581 agtgctatta aagcgaagta taaaaaagca tttaagatga aagatgacat agagctacct
     5641 tcagctttat tacaaaaatt tgataagcat ggttactatt attataaaga tgcgcaaaaa
     5701 aataatgata ttcaattgct tatgaagttg ttaaaagatg atatcgttga agaaaaaacg
     5761 attctcacac aaaatataac taaaaaaacc aagcgtgctg ttcgtgtcat tgaagggtat
     5821 catcctgatg aagtattagc taagttggag aaagttatta aacaatacga tttgtatgct
     5881 tacttgtctg aagaacaaca taaaacaata tttttaactg atattgagga tatgggcttt
     5941 tcaaaatcca gtttagatgg acttatcaaa aaaggttatg ttgaaaaata tgacgcggtt
     6001 gttgaaagag acccatttaa agatcgtgtt ttcgaacaag aatcaaaaca gcaattaaca
     6061 gaagaccaat ataaagcata tgaagcgatt aaagctaaaa ttgtaagcca agagcaagaa
     6121 acatttttac ttcatggtgt gacgggatca ggtaaaacag aagtatattt acaaacgata
     6181 gaagatgttt taagccaagg aaaacaggcg atgatgttag ttcctgaaat cgctctaaca
     6241 ccgcaaatgg ttttacgctt caaacgtcga tttggtgatg acgttgctgt attacattct
     6301 ggcttatcta atggggaacg ttatgatgaa tggcaaaaaa ttagggatgg tcgtgcgaga
     6361 gtaagtgttg gtgcaaggtc aagtgtgttc gcacctttca aaaatttagg gttaatcatc
     6421 attgatgaag aacatgaatc tacatataaa caagaagatt atccgagata tcacgctaga
     6481 gaaattgccc aatggcgaag tgaatatcat cactgtccag tcattttagg aagtgcaaca
     6541 ccatgtcttg aaagttatgc acgagctgaa aaaggcgttt atcatttgct atcattacca
     6601 aacagagtga accaacaagc tttacctgaa attgatatag tagacatgcg tgaagaattg
     6661 agtgaaggta atcggtcaat gttttcaaaa gatttacgtg aagccataca attaagatta
     6721 gatcgacagg aacaagttgt tttattttta aatcgacgtg gttatgcatc gtttatgtta
     6781 tgtcgggatt gtggatatgt accgcaatgt ccaaactgtg atatttcatt aacgtatcat
     6841 aaaacgacag acttattaaa atgtcactat tgtggttacc aagagacgcc accgaatcaa
     6901 tgtccaaatt gtgagagtga acacattcga caagtaggta ctggtactca gaaagttgaa
     6961 gaactattgc aacaagaatt tgaagatgcg cgcataatta ggatggatgt agatacaacc
     7021 tcaaagaaag gtgcacatga aaagttattg actgaattcg aaaaaggtaa cggtgacatt
     7081 ttactaggta ctcagatgat tgcgaaagga ttagattatc caaatattac tttagttggt
     7141 gtgctgaatg cagatacaat gttaaattta cctgattttc gggcgagcga acgtacttat
     7201 caactattaa cgcaagtggc tggtagagct ggtcgtcatg aaaaggcagg tcaagtcatc
     7261 attcaaacgt ataatccaga tcattattca atattggatg ttcaaaaaaa tgattattta
     7321 acattttatc gtcaggaaat ggaatatcgt aaattaggaa agtatccacc gtattattat
     7381 ttgattaatt tcacaatctc acataaagaa atgaagaagg ttatggtagc atcgcagcat
     7441 gttcataaaa ttttattaca gcatttaaca gaaaaagcgc ttgtactagg tccatctccg
     7501 gcagcacttg cgagaatcaa caatgaattt agattccaaa ttttagtgaa atataaaagt
     7561 gaacctggat tattacaagc cattcagttt ttagatgact attaccatga aaaatttata
     7621 aaagaaaaat tagcattgaa gattgatatt gatccacaga tgatgatgta acattactaa
     7681 ttattagaaa caagttcagt atgtacgagt atttgaacca gtgtttgaat atttacttta
     7741 agtacagaaa aagggcagaa tatacaactg ttaactattt aaattagcag tttatattct
     7801 gtctttttat atggctttat aacttacgtg attttggttt gataaggaat ttattagtat
     7861 tttcatttac gaattctgat tttaatgcaa gcgccatact tactgatgaa taaaagtact
     7921 aatgattaaa caaa
//
LOCUS       DAMQWL010000103         7767 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.104, whole genome shotgun sequence.
ACCESSION   DAMQWL010000103 DAMQWL010000000
VERSION     DAMQWL010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7767
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.104"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            75..761
                     /gene="mtnN"
                     /locus_tag="PF788_002148"
     CDS             75..761
                     /gene="mtnN"
                     /locus_tag="PF788_002148"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDG6304396.1"
                     /translation="MIGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVI
                     TQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADAT
                     AFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKI
                     KKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSS
                     QTVEALVSQL"
     gene            781..1308
                     /locus_tag="PF788_002149"
     CDS             781..1308
                     /locus_tag="PF788_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HDG6304397.1"
                     /translation="MGLVRKFFMPNSYVQSIFQIDLDKLVDKGVKGIITDLDNTLVGW
                     DVKEPTERVKAWFKEANEKGITITIVSNNNESRVASFSQHLDIDFIFKARKPMGKAFD
                     KAITKMNIRPDQTVVIGDQMLTDVFGGNRRGLYTIMVVPVKRTDGFITKFNRLIERRL
                     LRHFSKKGYITWEEN"
     gene            1309..2409
                     /gene="yqeH"
                     /locus_tag="PF788_002150"
     CDS             1309..2409
                     /gene="yqeH"
                     /locus_tag="PF788_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HDG6304398.1"
                     /translation="MSDILKCIGCGAPLQSEDKNKPGFVPEHNMFRDDVICRRCFRLK
                     NYNEVQDVGLESEDFLKLLSGLADKKGIVVNVVDVFDFEGSFINAVKRIVGNKKIILA
                     ANKLDLLPKQINKRRVKEWLKRTARKYGLEADDVVLISAEKGWGIDDLLSSIANIREN
                     EDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMYDTP
                     GIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDYVSGGKRPLV
                     CFFSNDLNIHRTKTEKANDLWRNQLGDLLTPPGNPQNFDLNEVKAVRLETGKEKRDVM
                     ISGLGFITIGPGAKVIVRVPKNVDVVLRNSIL"
     gene            2423..3229
                     /gene="aroE"
                     /locus_tag="PF788_002151"
     CDS             2423..3229
                     /gene="aroE"
                     /locus_tag="PF788_002151"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDG6304399.1"
                     /translation="MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHL
                     IKEIISKKELEGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGI
                     GYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLN
                     INQISLADAEKYLAEFDIVINTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPI
                     LEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDADINSMKTAVLQQLKGE"
     gene            3233..3523
                     /gene="yhbY"
                     /locus_tag="PF788_002152"
     CDS             3233..3523
                     /gene="yhbY"
                     /locus_tag="PF788_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDG6304400.1"
                     /translation="MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRE
                     LIKVHVLQNNFDDKKELAETLSEATHSELVQVIGSMIVIYRESKDNKEIELP"
     gene            3526..4095
                     /gene="nadD"
                     /locus_tag="PF788_002153"
     CDS             3526..4095
                     /gene="nadD"
                     /locus_tag="PF788_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HDG6304401.1"
                     /translation="MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPL
                     KKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELY
                     FVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIR
                     QRVSEGKSIQVLVPKSVENYIKGEGLYEH"
     gene            4085..4669
                     /gene="yqeK"
                     /locus_tag="PF788_002154"
     CDS             4085..4669
                     /gene="yqeK"
                     /locus_tag="PF788_002154"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     YqeK"
                     /protein_id="HDG6304402.1"
                     /translation="MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVE
                     LAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEV
                     LMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISK
                     RTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD"
     gene            4670..5023
                     /gene="rsfS"
                     /locus_tag="PF788_002155"
     CDS             4670..5023
                     /gene="rsfS"
                     /locus_tag="PF788_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDG6304403.1"
                     /translation="MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNN
                     ERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEK
                     LYQDAPLESYSQVAY"
     gene            5026..5742
                     /locus_tag="PF788_002156"
     CDS             5026..5742
                     /locus_tag="PF788_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDG6304404.1"
                     /translation="MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGT
                     GSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDS
                     LNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWD
                     AVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFT
                     DFNIDEHNEDAERLFFIAKK"
     gene            5782..6468
                     /locus_tag="PF788_002157"
     CDS             5782..6468
                     /locus_tag="PF788_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDG6304405.1"
                     /translation="MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYT
                     SRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMT
                     SKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
                     GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKT
                     FDKLKSYFTT"
     gene            6560..7021
                     /locus_tag="PF788_002158"
     CDS             6560..7021
                     /locus_tag="PF788_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000439692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComE operon protein 2"
                     /protein_id="HDG6304406.1"
                     /translation="MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYN
                     GSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCT
                     KSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG"
     gene            7026..>7767
                     /locus_tag="PF788_002159"
     CDS             7026..>7767
                     /locus_tag="PF788_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001837660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC family DNA internalization-related
                     competence protein"
                     /protein_id="HDG6304407.1"
                     /translation="MLFVALSMIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPIS
                     LFLIIFSAWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEI
                     YPFFLTDKKNFDLKKIESRNCIVKGQFKVNDNKFVTLKLQSIVVQSCLESNRSNLIEK
                     HKQFIMNRIYDSGIKFPDRIMALITGDVKEVNEQFKERVKEIVIYHLLAVSGSHIAAI
                     VFLIYQPLKRLNLPLFVIKGITIIVLALF"
BASE COUNT         2828 a          975 c         1490 g         2474 t
ORIGIN      
        1 tacttgtcgt tgtagtgatt aaaatgtgat aaaataacaa atgctaggat tttttaaaag
       61 aggtgaatca aaagatgatt ggtataattg gtgccatgga agaagaagta acaatattaa
      121 aaaataaatt aacacaatta agcgaaattt cagttgcaca tgttaaattt tatactggca
      181 ttttaaaaga tagagaagta gtgattaccc aaagtggcat tggaaaagtt aatgctgcaa
      241 tttctacgac attattaatt aataagttta aaccggacgt cattattaat acaggttctg
      301 ctggagcttt agatgaaagt ttaaatgtag gtgacgttct tataagtgat gatgtaaaat
      361 atcatgatgc agacgcaaca gcatttggtt atgaatatgg acaaatacca cagatgccgg
      421 tagcatttca atcaagtaaa cctttaatag aaaaagtatc tcaagttgta caacaacaac
      481 aattaacagc taaagtaggc ttaattgtaa gtggtgatag ctttatcggt agtgttgaac
      541 aacgccaaaa aattaaaaaa gcatttccaa atgcgatggc ggttgaaatg gaagcaactg
      601 caattgcaca aacatgttat caatttaatg taccatttgt tgtagttcgt gcagtttcag
      661 acttagcaaa tggagaagcg gaaatgagct tcgaagcatt tttagaaaaa gcagctgtat
      721 catcaagtca aactgttgaa gcattagtgt ctcaattata aaaaggtaaa ggtgagttaa
      781 atgggtttag ttcgcaagtt ttttatgccg aattcatatg ttcaatcaat atttcaaatt
      841 gatttagaca agttagtgga caaaggcgtt aaaggtatta ttacagattt agataatacg
      901 ctagtaggtt gggatgttaa agaacctaca gaacgtgtta aagcatggtt taaggaagct
      961 aatgaaaaag gaatcactat tacaatcgtg tctaataata atgagtctcg tgttgctagt
     1021 tttagtcagc atttagacat cgattttatt tttaaagcga gaaagccaat ggggaaagcg
     1081 tttgataaag caataactaa gatgaatatc agaccagatc aaactgttgt tataggtgac
     1141 caaatgctta ctgatgtatt tggtggtaat cgtcgaggtc tatatacaat tatggttgtt
     1201 ccagttaaac gaactgatgg ctttattact aagtttaata gattaattga aaggcgatta
     1261 ttacgtcatt tcagtaaaaa aggttatatc acatgggagg aaaattgatt gtctgacatt
     1321 ttaaaatgta tcggttgtgg tgcgccactt caatctgaag ataaaaataa acctggtttt
     1381 gtaccagagc ataatatgtt tcgtgatgac gtgatttgca gacgttgttt ccgcttgaaa
     1441 aattataacg aagttcaaga tgtaggatta gaaagtgaag actttttaaa attattatca
     1501 ggacttgcgg ataaaaaggg tattgtcgtc aatgtcgtgg atgtatttga ctttgaagga
     1561 tcatttatta atgcagttaa acgtattgtc ggaaacaaaa aaatcatttt agcagcaaat
     1621 aaattggatt tattgccgaa acaaattaat aaacgtcgag ttaaagaatg gttaaaacga
     1681 acagcaagaa aatatggttt ggaagctgac gatgtcgtat taatttcagc tgaaaaaggc
     1741 tggggcatag acgacttatt atcatcaatt gcgaatattc gagaaaatga agatgtgtat
     1801 attgtaggga caacgaatgt tgggaaatct acattgatta ataaactgat tgaagctagt
     1861 gttggtgaaa aagatgtagt aacaacttca agattccctg gaacaacttt agatatgata
     1921 gatattcctt tagatgaaac atcatttatg tatgatacac caggtattat tcaagatcac
     1981 caaatgacgc atttagttag tgaaaaagaa ttgaaaatta ttatgcctaa gaaagaaata
     2041 aaacaacgcg tatatcaatt aaatgaggcg cagacattat tcttcggcgg tctagcgcgc
     2101 atagattatg tatcaggtgg taaacgtccg ttagtttgtt tcttttctaa tgacttgaat
     2161 atacatcgta ctaaaacgga gaaggctaat gatttatggc gtaatcaact tggcgattta
     2221 ttaacgccac ctggaaatcc acaaaatttt gatcttaatg aggtaaaggc tgttagactt
     2281 gaaacaggca aagagaaacg cgatgttatg atctctggtc taggctttat aactatagga
     2341 ccaggggcta aagtaatcgt tcgtgttcct aaaaatgttg atgttgtatt aagaaattct
     2401 attttataag gtgattaaaa aaatgaaatt tgcagttata ggaaatccta tttcacattc
     2461 cttgtcgccc gttatgcata gagcaaattt taattcttta ggattagatg atacttatga
     2521 agctttaaat attccaattg aagattttca tttaattaaa gaaattattt cgaaaaaaga
     2581 attagaaggc tttaatatca caattcctca taaagaacgt atcataccgt atttagatta
     2641 tgttgatgaa caagcgatta atgcaggtgc agttaacact gttttgataa aagatggcaa
     2701 gtggataggg tataatacag atggtattgg ttatgttaaa ggattgcaca gcgtttatcc
     2761 agatttagaa aatgcataca ttttaatttt gggcgcaggt ggtgcaagta aaggtattgc
     2821 ttatgaatta gcaaaatttg taaagcccaa attaactgtt gcgaatagaa cgatggctcg
     2881 ttttgaatct tggaatttaa atataaacca aatttcatta gcagatgctg aaaagtattt
     2941 agctgaattc gatatcgtta ttaatacaac accagcgggt atggctggaa ataacgaaag
     3001 tattattaat ttaaagcatc tttctcccaa tactttaatg agtgatattg tttatatacc
     3061 gtataaaaca cctattttag aggaagcaga gcgcaaggga aaccatattt ataatggctt
     3121 agatatgttt gtttaccagg gtgcggaaag ctttaaaatt tggactaata aagatgctga
     3181 tattaattct atgaaaacag cagttttaca acaattaaaa ggagaataac atatgcttac
     3241 tggcaaacaa aaaagatact taagaagttt agcacacaat attgatccga tttttcaaat
     3301 tggaaaaggc ggtatcaacg aaaatatgat taaacaaata gatgatacgt tagaaaacag
     3361 agaattgatt aaagtacatg tactacaaaa taactttgat gataaaaaag aattagctga
     3421 aacattaagc gaagctactc atagtgaatt agtgcaagtg attggatcta tgatagtgat
     3481 ttatagagaa tctaaagata ataaagaaat tgaattgcca taataatgaa aaagatagta
     3541 ctttacggcg gtcagtttaa ccctatccat actgcacata tgatagtagc tagcgaagta
     3601 tttcatgaat tacagccaga tgaattttat tttttaccta gttttatgtc tccattgaaa
     3661 aagcaccatg attttataga cgttcagcac agattaacaa tgatacagat gattatcgac
     3721 gagcttggtt ttggagatat ttgtgacgat gaaattaaac gtggtggtca aagttatacc
     3781 tatgacacga tcaaggcatt caaggagcaa cacaaagaca gtgagttgta ctttgttatt
     3841 gggacggatc agtataacca actagagaaa tggtatcaaa ttgaatactt aaaagaaatg
     3901 gttacttttg tagttgtaaa tcgagacaaa aatagtcaaa atgttgaaaa tgctatgatt
     3961 gcaattcaga tacctagggt agatataagt tcgacaatga ttcgacaaag agttagtgaa
     4021 gggaaatcta tccaagttct tgttcctaaa tccgttgaaa actatattaa gggggaagga
     4081 ttatatgaac attgaaaaag caaaacggct tgcaaaagag aaactgccag agaaacgtta
     4141 taatcattct ttaagagttg cagaaacagc gattaaattg gcagaaattt atgatggaga
     4201 cactagtaaa gtagaattag caggtgtatt acatgatttc tgtaaatatg atgatttagg
     4261 taaaatgtat caaattgttc gacaatacga attaggtaat gatctactga gttatggtag
     4321 tgaaatattg catggccctg tgtgtgcagc aatcatggaa catgaatatg gtatcaatga
     4381 tgaggaagta ttaatggcta tcaaatacca tactactgga cgtcaacaaa tgacaaaaac
     4441 tgaaaaactg atttttattg cagattacat cgaacctgga agaacaatcc caggagttga
     4501 tgatattcga gatatggcat acaatcaagg tagtttagat aagacaattt atgaaatttc
     4561 taaacgcaca gtactatttt taatacagaa agatattacg gtatataata agacgattga
     4621 ctgtttaaat tattataact atagtgacga aagaataaag gatgattaaa tgaattcaca
     4681 agaattatta gcaattgctg tggatgcaat tgacaataaa aaaggcgaag atacgatttc
     4741 tttagaaatg aaaggtatca gcgatatgac agattatttt gttgtaacgc acggaaataa
     4801 tgaacgacaa gttcaagcga ttgctagagc ggtgaaagaa gtagccaatg aacaaaatat
     4861 agaagtaaaa cgtatggaag gatacaatga agcgcgttgg atattaattg acttagctga
     4921 tgttgtggta catgttttcc ataaagacga aagaaattat tataatattg aaaagttata
     4981 tcaagatgca ccattagaat catatagtca ggttgcgtat taattatgtc gcaatatgca
     5041 gaaatgagcc tagtgtacga tcaattgact caagatcaac catatgaaaa atggtttgaa
     5101 attgtaaaaa atcactgcaa agatgaatca aatattttag atattggatg cggtactggt
     5161 agtttaacag ttcaattaga agctttaggt aatgttactg gtatggattt aagtgttgat
     5221 atgttgactg ttgcagctca aaaatcagca aatgtaaatt ggcttgaagg agatatgaca
     5281 tcttttgatt tgcaacaaca atttgatatc atcactattt tttgtgactc tctaaattat
     5341 ttgcaagatg aaactgcagt gattgaaaca ttcatcaatg tttatcatca tctgactgat
     5401 tcaggtgtat ttatttttga tgtacatact gtttataaaa tgatgacttt gtttaataat
     5461 caaagttata ttgatgataa aggggacatt tttttagcat gggatgctgt gcaaggagat
     5521 ttacctttaa gtgtttatca tgatatgaca tttttcattc gacatgaaga tgaaacatat
     5581 tcaagatttg atgagtctca ttttcagaga acatttgatg aaaagacata tttgtcttgg
     5641 ttagctcaag ttggttttaa acatgttgaa acatttactg attttaatat agatgaacat
     5701 aatgaagatg cagaaagatt gtttttcatt gcgaaaaaat aaaagtaaaa ccactcgctc
     5761 agacgtgtat aaagttgagg agtggtttta ttgtatcaat ttttattacg ctataaagat
     5821 tttttaactc aatggaagtt atatattcta agtgctgttg ttttaattat ggtattaatt
     5881 ggttttatat tctggagaca agatgattat acttcaagaa attttgaaaa taaagatact
     5941 gctctgaaac aaagcactag tgaaaatagt agtttgtcca aagtagaaga tgtccaggtc
     6001 aaagatggag ataattccaa aaataagggt cctgtatatg tcgatgtaaa aggtgctgtt
     6061 aaacatccta atgtttataa aatgacatct aaggatagag tagttgattt acttgataaa
     6121 gcacaattat tggaggatgc agatgtaagt caaattaatt tgtctgaaaa attaacagat
     6181 caaaaaatga ttttcatacc tcataaagga caaaagaatg ttgaaccaca aattgaagta
     6241 aacagtgtgc acgaaaaaaa tgggaacaca aataatacta aagtaaattt aaatacggca
     6301 tctgtatcag aattgatgtc tgttcctgga gttgggcaag ctaaagctaa tgcaattgtt
     6361 gaatatcgca accaacaagg tgcatttcaa gaaattgacg atttgaaaaa agtaaaaggt
     6421 tttggaagta aaacttttga taaactgaaa tcttatttca cgacataatg gattatttta
     6481 attgcaaatt ttattttttg tgattaatct tatattatta gaaaatgtta ctaaatttta
     6541 agtatggaag gtgaacatct tggaaagaat caaatgggaa gaatatttta tggcacaaag
     6601 tcatttgcta gcattacgtt caacttgtca aagattatct gtaggtgcaa cgattgttaa
     6661 ggataatcgt attattgctg gtggttataa tggctctgta gctggcgagg tgcattgtat
     6721 agatgaagga tgtttaattg aagatggaca ttgtatcaga acgatacatg cagaaatgaa
     6781 tgctttatta caatgtgcaa aacaaggtgt atctactgaa ggtgcaacaa tctatgttac
     6841 tcattttcca tgcctaaatt gtacaaagtc aattattcaa gcaggtataa agcgtatcta
     6901 ctatgcagaa gattatcata accatgaata tgcaactaaa ttactcaaac aatctggtat
     6961 tgaatttaaa aaaattccat tttcaccaga atatgttgct aaatatctga ctaaaggtta
     7021 atgttttgct gtttgtcgcg ttatcaatga ttgtaggagt gctttggaat tctagcaaag
     7081 tgctctctac atttcttttc attttacttt tgtatattac ttatcgtaaa aataaaatcg
     7141 tttatgcccc tatttctctc tttttaatca ttttctccgc atggtattta cattattcac
     7201 aacaagcaat atttaattat atcaattata ttgaacgtaa ttctcagttt aatgagcgtg
     7261 ctcaagtaat ccaaattcaa cgtcaaggta gtgacacata taaaggtagg ttgagtttaa
     7321 aaaatgaaat atatcctttc tttttaacag ataaaaagaa ttttgattta aagaaaattg
     7381 aaagtcgtaa ttgtattgtt aaaggacaat tcaaagttaa tgacaataag tttgtaactc
     7441 ttaaattaca aagtatagtt gtacaaagct gcctagaatc gaaccggtct aatttaattg
     7501 agaaacataa acagtttata atgaatcgaa tttatgattc gggtattaag tttccggatc
     7561 gtattatggc attgattact ggtgacgtaa aagaagttaa tgagcaattt aaggaacgtg
     7621 ttaaagagat agttatatat catttgctgg cagttagtgg ctcgcatata gctgcaattg
     7681 tatttttaat ttaccaacct ttaaaacgat taaatttacc tttatttgtc attaaaggaa
     7741 ttacaatcat tgtattagct ttatttg
//
LOCUS       DAMQWL010000104         7735 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.105, whole genome shotgun sequence.
ACCESSION   DAMQWL010000104 DAMQWL010000000
VERSION     DAMQWL010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7735
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.105"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..125
                     /locus_tag="PF788_002160"
     CDS             <1..125
                     /locus_tag="PF788_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500150.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="competence protein ComGF"
                     /protein_id="HDG6304408.1"
                     /translation="NITMINNVTAFTANIYYKSIIKITITVKVGTNVQTKTIYV"
     gene            222..368
                     /locus_tag="PF788_002161"
     CDS             222..368
                     /locus_tag="PF788_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304409.1"
                     /translation="MMLTAIYFSIFTFYISQYSLKLKTLYNIETDYNYKIVLLLKEGK
                     THES"
     gene            358..882
                     /locus_tag="PF788_002162"
     CDS             358..882
                     /locus_tag="PF788_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HDG6304410.1"
                     /translation="MNHDKSPIILIGFMGTGKSTIGKYVADEQNLSFIDIDSYIEEKY
                     KLTIPEIFCKHGEQYFRNLEFTCLQECINTADIIATGGGIIESEEAFNFLKNQKNIIW
                     LDCNIDIIYSRINDDPHRPNANNKTIKQLNDLYCSRNLRYNEIAFKKFDSHLLSISEI
                     YYELLNLIKASDQY"
     regulatory      869..966
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            1041..2132
                     /gene="gcvT"
                     /locus_tag="PF788_002163"
     CDS             1041..2132
                     /gene="gcvT"
                     /locus_tag="PF788_002163"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HDG6304411.1"
                     /translation="MSSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFSSIKEEHNAVR
                     YEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLV
                     IYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVSNQYGQLAIQGPKARDLIN
                     QLVDEDVTEMKMFEFKQGVKLFGANVILSQSGYTGEDGFEIYCNIDDTEKIWDGLLEY
                     NVMPCGLGARDTLRLEAGLPLHGQDLTESITPYEGGIAFASKPLIDADFIGKSVLKDQ
                     KENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRD
                     EFEMGRELLVQVRKRQLKAKIVKKNQIDK"
     gene            2152..3498
                     /gene="gcvPA"
                     /locus_tag="PF788_002164"
     CDS             2152..3498
                     /gene="gcvPA"
                     /locus_tag="PF788_002164"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HDG6304412.1"
                     /translation="MSHRYIPLTEKDKQEMLQTIGAKSIGELFGDVPSDILLNRDLNI
                     AEGEAETTLLRRLNRIASKNITKETHTSFLGAGVYDHYAPSVVDAMISRSEFYTAYTP
                     YQPEISQGELQAIFEFQTLICELTDMDVANSSMYDGMTSFAEACILAFSQTKKNKIVV
                     SKGLHYQALQVLHTYAKTRKEFEVVEIDLDGTVTDLKKLEAAVDDETAAVAVQYPNFY
                     GSIEDLEKIHSFIEDKKALFIVYANPLALGLLTPPGSFGADIVVGDTQPFGIPAQFGG
                     PHCGYFATTKKLMRKVPGRLVGQTQDDEGNRGFVLTLQAREQHIRRDKATSNICSNQA
                     LNALASSIAMSALGKQGIYDIAVQNIEHANYAKQQFIKKGFEVLDGTSFNEFVVKFDK
                     PIQQVNEELVKYNIIGGFDLGVVSDDFKNHMLIAVTELRTKDEIDTFVEKAGELND"
     gene            3491..4963
                     /gene="gcvPB"
                     /locus_tag="PF788_002165"
     CDS             3491..4963
                     /gene="gcvPB"
                     /locus_tag="PF788_002165"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HDG6304413.1"
                     /translation="MTSKSSPLIFERSREGRYAYSLPKSDIKTNSVESLLDDKFIRKN
                     KAEFPEVAELDLVRHYTELSNKNFGVDNGFYPLGSCTMKYNPKINEKVARIPGFSESH
                     PLQDEDQVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHENNGE
                     GHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNERGEVDIDDLKRVVNENTAAIMLTN
                     PNTLGIFEKNIMEIREIVHNAGGLLYYDGANLNAIMDKVRPGDMGFDAVHLNLHKTFT
                     GPHGGGGPGSGPVGVVKELASYLPKPMVIKDGDKFKYDNDIKNSIGRVKPFYGNFGIY
                     LRAYTYIRTMGATGLKEVSEAAVLNANYIKARLSKHFEIPYKQYCKHEFVLSGVRQKE
                     FGVRTLDMAKRLLDFGVHPPTIYFPLNVEEGMMIEPTETESKETLDYFIDTLISIAEE
                     AKNDPDKVLEAPHTTVIDRLDEATAARKPILKFENLKQEK"
     gene            complement(5328..5714)
                     /locus_tag="PF788_002166"
     CDS             complement(5328..5714)
                     /locus_tag="PF788_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDG6304414.1"
                     /translation="MSASLYIAIILVIAIIAYMIVQQILNKRAVKELDQNEFHNGIRK
                     AQVIDVREKVDYDYGHINGSRNIPMTMFRQRFQGLRKDQPVYLCDANGIASYRAARIL
                     KKNGYTDIYMLKGGYKKWTGKIKSKK"
     gene            5872..6702
                     /locus_tag="PF788_002167"
     CDS             5872..6702
                     /locus_tag="PF788_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase family protein"
                     /protein_id="HDG6304415.1"
                     /translation="MTETWNFINTGSKDPYYNMAMDEALLNFVSRGEIDPVIRFYTWN
                     PATLSIGYFQRLQKEIDIDKVKEKGFGLVRRQTGGRGVLHDKELTYSVIVPESHPNMP
                     STVTEAYRVISQGLLEGFKNLGFDTYFAVPKTPEERQKLKQPRSSVCFDAPSWYELVV
                     EGRKIAGSAQTRQKGVILQHGSILQDIDIDELFDMFIYKNERLKLKMKEAFVEKAVAI
                     NDISDEHITISQMEEAFEKGFKKGLNIEFKPLELTEAQLAEVEELTEKYRSDEWMFRK
                     "
     gene            complement(6766..6984)
                     /locus_tag="PF788_002168"
     CDS             complement(6766..6984)
                     /locus_tag="PF788_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304416.1"
                     /translation="MRNIIFYLVLIIAAIGLVMNLDAFIFSIVRMLISFAVIAGIIYL
                     IYYFFILTEDQRKYRKAMRKYKRNQRRK"
     gene            complement(6998..7579)
                     /locus_tag="PF788_002169"
     CDS             complement(6998..7579)
                     /locus_tag="PF788_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304417.1"
                     /translation="MKKLVSIVGATLLLAGCGSQNLAPLEEKTTDLREDNHQLKLDIQ
                     ELNQQISDSKSKIKGLEKDKENSKKTASNNTKIKLMNVTSTYYDKVAKALKSYNDIEK
                     DVSKNKGDKNVQSKLNQISNDIQSAHTSYKDAIDGLSLSDDDKKTSKNIDKLNSDLNH
                     AFDDIKNGYQNKDKKQLTKGQQALSKLNLNAKS"
BASE COUNT         2735 a         1047 c         1392 g         2561 t
ORIGIN      
        1 gaaatataac aatgattaat aatgttacag catttactgc aaatatctac tataaatcca
       61 ttattaaaat aacgataaca gttaaagtcg gtacaaatgt gcagactaaa actatttatg
      121 tataacttac tagtatttaa atgagtacta ttaaaaagga tgtgaaataa tttattaatt
      181 ttgatttata taaagaaaaa ggatatgtta cgccgttctt attgatgcta acagcaattt
      241 atttttccat tttcactttt tatatcagtc aatatagttt aaaattaaag acattatata
      301 atattgaaac tgactataac tataagattg ttttgttatt gaaagaaggg aaaacgcatg
      361 aatcatgata aatcaccaat aattttaatt ggtttcatgg gtaccggtaa atctacgatt
      421 ggtaaatacg ttgcagatga gcaaaattta tcatttattg atatagattc atatatcgaa
      481 gagaagtata agttaacaat accagaaata ttttgtaaac atggtgaaca atatttcagg
      541 aatttagagt tcacatgttt gcaagaatgt attaacactg cagatataat tgctactggt
      601 ggtggtatta ttgagagtga agaggcattt aattttttga aaaatcaaaa aaacattatt
      661 tggttagatt gtaatattga tattatatat agtcgaatca atgatgaccc acatcgacct
      721 aatgcaaata ataagacaat caagcagtta aatgacttgt attgctcgcg gaatttaaga
      781 tataatgaaa tcgcattcaa gaaatttgat agtcatttgc tatcaatttc agaaatatat
      841 tatgaattgc taaatttaat aaaagcgagt gatcagtatt agagagaata gagcgttaag
      901 actctatcgc cgaaggtgca agtaatttat tacgaaactc tcaggcaaaa ggataatact
      961 gtaacgcgtt cctgaattgg tgatttataa acagggtagc gattgctatc ctgtttttat
     1021 aattttaagg gggtatttca atgtcaagtg atttaaaaca aacaccttta tatcaaaatt
     1081 atgttgatag aggtgcaaaa attgtggaat tcggaggatg ggcgatgcct gttcaatttt
     1141 caagtattaa agaggagcat aatgctgttc gatacgaaat tggcctgttt gatgttagtc
     1201 atatgggtga aattgaagta acaggtaaag atgctagtca gtttgtgcaa tatttattat
     1261 caaatgatac tgataattta actacttcaa aagcattata tactgcttta tgtaatgaag
     1321 aaggcggtat tattgatgat ttagtaatat ataaattagc tgacgacaat tatttattag
     1381 ttgttaatgc tgctaatact gaaaaagatt ttaattggat tttaaaacac aaagagaaat
     1441 ttgatgttga agtacaaaat gtatcaaacc aatatggtca attagcaata caaggaccaa
     1501 aagctagaga tttaattaat caattagttg atgaagatgt aactgaaatg aaaatgtttg
     1561 aatttaaaca gggtgtcaaa ttatttggag caaacgtcat tttatctcag tcaggttaca
     1621 caggtgaaga tgggtttgaa atttattgta atatcgatga tactgaaaaa atttgggatg
     1681 gtttattaga gtataatgtt atgccatgtg ggttaggcgc tcgtgataca ttaagattag
     1741 aggctggatt gccattacat ggacaagatt taactgaatc aattacacca tatgaaggtg
     1801 gtatcgcttt tgcaagtaaa ccattaattg atgctgattt tattggtaaa tctgtattaa
     1861 aagatcaaaa agaaaatggt gcaccaagaa gaacagtggg attagaatta cttgaaaaag
     1921 gaattgcaag aactggttat gaagttatgg atttagatgg aaatattatt ggagaagtaa
     1981 cttcaggaac acagtctcca tcatcaggaa aatcaattgc acttgcaatg ataaaaagag
     2041 atgagtttga aatgggtaga gagttgcttg ttcaagttcg taagcgtcaa ttaaaagcga
     2101 aaattgttaa gaaaaatcaa attgataaat aattaaaaag gggtgtgcat tgtgagtcat
     2161 cgttatatac ctttaactga aaaagacaag caagaaatgt tacaaacaat tggtgcaaaa
     2221 tctataggag aattattcgg tgatgtacca agtgacattt tattaaatag agatttaaat
     2281 attgctgaag gcgaagcgga aacaacgtta cttagaagat taaatcgcat tgcaagcaag
     2341 aatatcacta aagaaacgca tacatcattt ttgggtgctg gtgtttatga tcattacgcg
     2401 ccatcagttg tggatgctat gatttcaaga tcagaatttt acacagcata tacgccatat
     2461 caaccggaaa tttctcaagg tgaattacaa gccatttttg agttccaaac tttaatttgt
     2521 gaattaacag atatggatgt agcaaattct tctatgtatg atgggatgac tagctttgct
     2581 gaagcatgta tcttagcatt tagtcaaaca aagaaaaata aaattgtagt ctcaaaaggt
     2641 ttacattatc aagcattaca agtacttcat acttatgcta agacgcgtaa ggaattcgaa
     2701 gtagtggaaa tcgatttaga tggcactgtt acagatttga aaaaattaga agcagcagtg
     2761 gatgatgaaa cagcagctgt tgcagtacaa tatccaaact tttacggttc aattgaagat
     2821 cttgaaaaga ttcatagctt tattgaagat aaaaaagcat tatttatcgt atatgcaaat
     2881 ccattagcat tgggattact tacacctcca ggttcatttg gtgcagatat tgttgtaggt
     2941 gatactcagc cattcggaat tcctgctcaa ttcggtgggc cacattgtgg atattttgca
     3001 acgacgaaaa agttaatgcg taaagtgcca ggtagattag tcggtcaaac acaagatgat
     3061 gaaggtaatc gtggctttgt attaacatta caagcacgtg aacaacatat tcgacgcgat
     3121 aaagcgacat ctaatatttg ttctaaccaa gcattaaatg ctttagcgtc atcaattgca
     3181 atgtcagcac ttggtaaaca aggtatctat gatattgcag ttcaaaatat agaacatgct
     3241 aactatgcta aacaacaatt tattaaaaaa ggttttgaag tattagatgg tacatctttc
     3301 aatgagtttg tagtcaaatt tgacaaacca attcaacaag ttaacgagga attagtgaag
     3361 tacaatatta tcggtggttt tgatttaggt gttgtttcag acgactttaa aaatcacatg
     3421 ttaatagctg taactgaatt aagaacaaaa gatgaaatcg atacatttgt agaaaaggct
     3481 ggtgagttaa atgactagta aatcaagtcc attaattttt gaaagatctc gtgaaggcag
     3541 atatgcatat tcattaccaa aaagtgatat taaaacaaat tctgttgagt cattgttaga
     3601 tgataaattt attcgtaaaa acaaagcgga gtttcctgaa gttgctgaac tagacttagt
     3661 acgtcattat actgaacttt caaataaaaa tttcggtgta gacaacggat tttatccatt
     3721 gggttcatgt acgatgaagt ataaccctaa aattaatgaa aaggttgcta gaataccagg
     3781 atttagtgaa tcacatccat tacaagatga agatcaagtt caaggttcat tagaaattat
     3841 ttatagtttg caagaagaat taaaagaaat tactggtatg gatgaggtga cattacaacc
     3901 agctgctggc gcacatggtg aatggactgc attgatgata tttaaagctt accatgagaa
     3961 taatggtgaa ggtcatcgtg atgaagtcat tgtgccagat tctgcgcatg gtacgaatcc
     4021 agcctcagct tcatttgcag gatttaaatc agttactgta aaatcaaacg aacgtggcga
     4081 agttgatatt gatgacttga aacgtgttgt aaatgaaaat acagcagcta ttatgttaac
     4141 taatccaaac actttaggta ttttcgaaaa aaatattatg gaaatccgtg aaatcgtcca
     4201 taatgctggt ggtctattat attatgatgg tgcgaattta aacgctatta tggacaaagt
     4261 tcgcccagga gatatgggat ttgatgctgt tcatttaaac ttgcataaaa catttactgg
     4321 tccacatggt ggtggcggtc ctggttcagg tccagtcggt gtagtaaaag aactagcaag
     4381 ttacttacca aagccaatgg ttattaaaga tggcgacaaa tttaaatatg ataatgacat
     4441 taaaaattct atcggacgtg taaaaccatt ttatggtaac tttggtattt acttaagagc
     4501 ttatacgtat attcgaacta tgggagcaac tggacttaaa gaggtttctg aagcagcggt
     4561 tcttaatgcg aattatatta aagcacgttt atctaaacac tttgaaatac cttataaaca
     4621 atattgtaaa cacgagtttg tgttaagtgg tgtgcgtcaa aaagaatttg gtgtacgtac
     4681 tttagacatg gctaagcgat tattagattt cggtgtacat ccaccaacaa tatacttccc
     4741 attaaatgtt gaagaaggta tgatgattga accgactgag acagagtcta aagaaacact
     4801 tgattatttt atcgatacat taattagtat tgctgaagaa gctaaaaatg atcctgataa
     4861 agtgctagaa gcaccacata caactgtgat tgatcgatta gacgaagcta cagctgctcg
     4921 taaaccaata ttaaagtttg aaaatcttaa acaggaaaaa taaagtatta aacacatatt
     4981 ccgagaatta ttattctaac tttgtatgaa gatttaagga taatggtttc aaaatcaatt
     5041 gaaaaagaca atttctattt aaacaagaaa actaaaccga agtaataact cttagggttt
     5101 ggtattattc tttcatagaa attgtctttt cattttttag attgcggtaa ttgaatcgta
     5161 ttgaaaatga gctgaacttt ctttattatg ctgaaactaa gtttaatgat cagtgaagct
     5221 agagaaatat agtaacagac tttgttaaaa aattaaaatc tgagtattgt tattgatgat
     5281 caattaacac tcagatttta ttaaatcgta tattaaattt acaaaaacta ttttttagac
     5341 tttatttttc cagtccattt tttatagccg ccttttaaca tatagatatc tgtatatcca
     5401 ttctttttca aaatacgagc ggctctatag ctagcaatcc cattggcatc acataagtat
     5461 accggttgat cttttcttaa tccttggaat cgttgcctga acattgtcat aggaatattg
     5521 cgagacccat taatgtgacc gtagtcatag tcaactttct ctctaacatc gatgacttga
     5581 gcttttctaa tcccattatg gaattcattt tgatctaatt ctttaacagc tcgcttgtta
     5641 agaatttgtt gaacaatcat ataagcaata attgctataa ctaaaattat tgcgatgtac
     5701 aaactagcac tcatcttgca tcctccctaa ttaaacgata atataattat aagactgtta
     5761 ggtcaaatta tcaaaatatt tcactaaaga attgcaatta ttattcattt agttaaattg
     5821 attaattagc gaatcaaata ttatacattt tgctgatagg agttcttgaa tatgactgaa
     5881 acttggaatt ttattaatac aggaagtaaa gacccatatt ataatatggc aatggatgaa
     5941 gcgttattaa attttgtctc tagaggtgaa attgatccag ttatacgttt ttacacatgg
     6001 aatcctgcaa cattatcaat agggtatttc caaaggctac aaaaagaaat tgatattgat
     6061 aaggttaaag agaaaggttt tggtctcgta aggcgtcaaa ctggtggccg tggggtgcta
     6121 catgataaag agttaactta cagtgtgatt gtgcctgaat cgcatccgaa tatgccttct
     6181 acagttacag aagcgtacag agtgatttca caaggattat tagaaggatt taaaaactta
     6241 ggatttgata cttattttgc ggtacctaaa acgcctgaag agcgtcaaaa attaaaacaa
     6301 cctcgaagtt cagtgtgttt tgatgcacca agttggtatg agctagttgt tgaaggccgt
     6361 aagattgctg ggagtgctca aacgagacaa aagggcgtaa tcctccaaca cggttcgatt
     6421 ttacaagata ttgatattga tgaactgttt gatatgttta tttataaaaa tgaaagatta
     6481 aaattaaaaa tgaaagaggc attcgttgaa aaagcagttg ccatcaatga tatttcagat
     6541 gaacacatta ctattagtca aatggaagaa gctttcgaga aaggttttaa gaaaggttta
     6601 aatatagaat ttaagccact tgaattaaca gaagctcaat tggcagaagt ggaagaatta
     6661 actgaaaaat atcgttcaga tgaatggatg tttagaaagt agtttttaga ataaaaaatg
     6721 gaagcacgta gactatttta cctacaagtg cttccgtttt tttatctatt ttcttctttg
     6781 atttctttta tacttacgca ttgctttgcg atatttgcgt tggtcttcag ttaagatgaa
     6841 gaaataataa atcagataaa taataccagc tattacagca aagctgatta acattctgac
     6901 gattgaaaaa ataaaggcat ctagattcat tactaatcca atcgcagcaa taataagtac
     6961 aagataaaat attatattac gcattaaaag actcctatca tgattttgca tttaagttta
     7021 attttgacaa cgcttgttgt ccttttgtaa gttgtttttt atctttattt tgatagccat
     7081 ttttaatatc atcaaatgca tgattcaaat cagagtttaa tttatcgata tttttagacg
     7141 tttttttatc atcatcacta agtgataaac catcgatagc atctttgtat gaagtgtgag
     7201 cactttgaat atcattagaa atttgattta atttcgattg aacattctta tcgcctttgt
     7261 ttttacttac atctttctca atatcgttat aggatttcaa agctttagca actttgtcgt
     7321 agtatgttga tgtaacattc atcaatttaa ttttcgtatt attagatgca gtttttttac
     7381 tgttttcttt atccttttca agccctttaa ttttagattt agaatcacta atttgttgat
     7441 taagttcttg aatatctagt ttgagttgat gattatcttc tcttaaatct gttgtttttt
     7501 cttctaatgg tgctaaattt tgtgatccac atccagctaa caataatgtt gcgccaacaa
     7561 ttgaaaccaa ttttttcatt actatctccc taaaatcaat atctattatt ttttatcctt
     7621 attatgatat tattttaatg tataaagttg aaatgcacaa acgtttcact aggaggtaat
     7681 aagatgagca gaataacaca agtgcatcgt attttagaac aaaaacattt agatg
//
LOCUS       DAMQWL010000105         7731 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.106, whole genome shotgun sequence.
ACCESSION   DAMQWL010000105 DAMQWL010000000
VERSION     DAMQWL010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7731
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.106"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..432)
                     /locus_tag="PF788_002170"
     CDS             complement(<1..432)
                     /locus_tag="PF788_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4865 family protein"
                     /protein_id="HDG6304418.1"
                     /translation="MHAMQYHVKLPSDYNMEIIRDRVRLNGYKTDGFKNLIIKAYLIS
                     QTTTNCITNTYSPLYLWRSSEGMTEFIFNGFYDNVISSFGWQNINIGVIYSMNITDSV
                     KHSLYALEEYIDIFPTLSLKEIEIKKLFRIFDNAVAEIIIYN"
     gene            523..1266
                     /locus_tag="PF788_002171"
     CDS             523..1266
                     /locus_tag="PF788_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDG6304419.1"
                     /translation="MIKLNFNDLEIFITVCEEASINKAAIKLRYAQSNISQRISKLEN
                     ELGVVLLFRNQKGAKATKAGEEFLAYSKKVLRDTETIKNKMKNNTMSILCSELLFNYL
                     SESEEIMMSNNSINFISSGNIRKAIEKNNYDKVISFIKINDSNYRLSNVDTMKVTLYS
                     NGSNYDKEALLINKDEFCPLRKITLDNKLDSQRVMEIDSLAAIINLVKQGKGKALLPM
                     TFENKRDIVQDISKIFEVNYYTYNHIMHH"
     gene            1700..2302
                     /locus_tag="PF788_002172"
     CDS             1700..2302
                     /locus_tag="PF788_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304420.1"
                     /translation="MLISLVIPVFALLVIGGIIWMIIEGIVHISKKNKAIDNFFNQVN
                     KVSETYKFATTFLFLILATAGISQFYLYYIVSAFLFWLVILTFGIAGIIFLMPYGLCF
                     LPFYKQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQ
                     AGGYAYLALAVLSTLLIVAKKATNKNKEIETVDNTNITER"
     gene            2569..5721
                     /locus_tag="PF788_002173"
     CDS             2569..5721
                     /locus_tag="PF788_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA2/NAM7 family helicase"
                     /protein_id="HDG6304421.1"
                     /translation="MSQLLNDTLSAWLLIESLSPGEVNFTAEDILSAEHFKNGAKQAQ
                     LQSFDEYFEIWNAERFIISEEKSETGELIFKFYRHCFRYNEINLKIQDIFDDYSEIHN
                     PNGTHCYGYTFNTDKHGKVIVDSIHIPMIMSALKEIEKNKNANIEEKFNDSVEKFVQK
                     VKEILADEPINEFKLKKMDKAYDEYFSVLNSKKDGLFGHYVAIEYVKDSDLPQPEFNS
                     FFISDIEKARKSPNQTLIDYIEGVEESQHIEVDENKEMFDKFLHPSRLPDGRWPSQTE
                     FRLSLMQQLAVNQITSGNERISSVNGPPGTGKTTLLKDIFAHLVVERGKELAKLNNPK
                     DAFVKTKIHETDDKYVYLLKESIAKYKMVVASSNNGAVENISKDLPKIEEIIRNPEKC
                     KFPKYEQNYANLAHELKDFAEIAEDLIGESAWGLFSGVFGKSTNINQVLSHMLKQDAN
                     DIGFAKLLQNENNRMSYNELMSEWQSHQRAFLEELRHVEMLKEESIRAYDVYKNCESF
                     SKIEQVINSEKTSIEEQVYHLDNETLRDNKEIEDLDNRINYIVKQIETLNELIKSIKE
                     SNKGFINKLKAMFNSEEDESYKDHNKEKQQLLTQQLELEKCKKNKHEDLVSKLKEKEK
                     LIKQLTKVQLQLDELNSQLQELEAYRIESKITIPEKDFWSDNNYDERQVTNLWTSDEL
                     QYRRAMLFLRAMILHKLLLIANNTTIYYAINDFKDRRKLIDANPDKVHNAWNVMHLIF
                     PVVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALYRSKKVVAVGDPIQIE
                     PVVTLESHLIDNIRKNYHVPEYLVSKEASVQSVADNANQYGFWKSDATDSNQKTWIGI
                     PLWVHRRCLKPMFTIANQIAYNNKMVLPSNITKVGKTGWYDVKGNAVQKQFVKEHGEK
                     VVGLLADDWIEAIKEGKNEPSSFVISPFSAVQQQIKRMLKQQLPTRIDIERTKINQWV
                     DKSIGTVHTFQGKEAQKVYFVIGTDNTQDGAVNWSCEKPNLLNVAVTRAKKEFYVIGD
                     MQRIQMKPFYETIFKERNVK"
     gene            5778..6260
                     /locus_tag="PF788_002174"
     CDS             5778..6260
                     /locus_tag="PF788_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304422.1"
                     /translation="MEKFNNWILNAISGSQTDKNETTEELKGAKFIILYAYSMLVLLA
                     LVISNIFIHILEPKLSITTQIIIVLILIEALIGLRFLKAYDVKRGKDKENKKNSKDFV
                     KLKSILVAILFTSLALTAGTVADIYGFTDLGNTRSDLIVWSIGGIIFGLVCYTMEDKR
                     "
     gene            6465..7451
                     /locus_tag="PF788_002175"
     CDS             6465..7451
                     /locus_tag="PF788_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylinositol-specific phospholipase C"
                     /protein_id="HDG6304423.1"
                     /translation="MKKCIKTLFLSIILVVMSGWYHSAHASDSLSKSPENWMSKLDDG
                     KHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMI
                     SVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYY
                     YNNPQYQNLFYTGSNANPTLKETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFE
                     TKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFN
                     STYNYASHINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNK"
BASE COUNT         2977 a          929 c         1352 g         2473 t
ORIGIN      
        1 attataaatt ataatttctg caactgcatt atcgaagatt ctaaacaatt ttttgatttc
       61 tatttctttt agagataaag tagggaaaat gtcgatatat tcttcaagcg cataaagact
      121 atgtttaaca gaatcggtta tgttcattga atatatcaca ccaatattta tattttgcca
      181 tccaaaagaa gaaataacat tatcataaaa tccattgaat ataaattcag tcatcccctc
      241 tgaacttctc cataaatata atggtgaata agtatttgta atgcaattag tagttgtttg
      301 acttattaaa taagctttta taattaaatt tttaaatcca tcagtcttat aaccatttaa
      361 tcgaactcta tctctaatta tttccatatt gtaatcacta ggcaacttaa catgatattg
      421 cattgcatgc atttagcata ccccctttta taaaaaggat agcaataata agtaaaatct
      481 catattatcc aattgtgata tagttatcat aaaaagtgat aggtgattaa attgaacttt
      541 aatgatttgg aaatttttat aactgtatgt gaagaagcat ctatcaataa agctgcaatt
      601 aaacttagat atgcacaatc taatatatct caaagaatta gcaagcttga aaatgaatta
      661 ggtgtagttt tgctttttag aaatcaaaaa ggtgctaagg caactaaagc aggcgaagaa
      721 ttcttagcgt atagcaaaaa agtattaaga gatacagaga ctataaaaaa taaaatgaaa
      781 aataatacta tgtctatttt atgctcagaa ctgttattta attatttatc tgagagcgaa
      841 gaaattatga tgtcgaataa ctcaattaat tttatttcta gtggaaatat tagaaaagct
      901 atagaaaaaa ataattatga taaggttatt tcattcataa aaattaacga ctcaaattat
      961 agacttagta atgttgatac tatgaaagta acgctttaca gtaatggaag taattatgat
     1021 aaagaggctt tactaataaa taaagatgag ttttgtcctt taaggaaaat aactttagat
     1081 aataagcttg attcacaacg ggtaatggaa attgattcat tggcagcaat aataaactta
     1141 gttaaacaag gaaaaggaaa ggctttatta cctatgactt ttgagaataa aagagatata
     1201 gtacaggaca tttctaagat atttgaagtt aactactata cttataatca tattatgcat
     1261 cattaattga aagttgattg agtttaaatt acaggaacga ttttaaaagt ctagtagtta
     1321 gaatgagcga tgtgacagaa aagaaattat gccttttatt ttgtaaattc gttgttttaa
     1381 agtaaaggtc cttgtagtat aggaaaaagt ggatgacttc tccgccttta ccaccctttc
     1441 aagcataatg ataactgcta aatattgatt atagcaccat tgcaaaacta atcattaatt
     1501 gtcatattca actattttga aaagtatcaa tttcacatta tcaaattatt gagtatctca
     1561 atttattgtt atacacaaac agtatttttg ttatcataga gttaataaat ataataaatt
     1621 aaacaagtaa ctttacaaaa attagaatga ttcaattcaa tcataattgt ttgaaaatag
     1681 aggtgagcag gtgaacgata tgttaattag tcttgtaatc ccagtttttg ctttgttagt
     1741 tattggtggt attatttgga tgattataga aggtatagta catatttcaa aaaagaataa
     1801 agcaattgat aactttttta accaagttaa taaagtaagt gagacatata aattcgctac
     1861 tactttttta tttctaatct tggctacggc tggtatttct caattttatc tatattatat
     1921 agtatcagcg tttctttttt ggcttgtcat acttaccttt ggcattgcag gtatcatttt
     1981 tttaatgcca tatggattat gttttctacc gttttataag caaaaaaaga aaaaacagac
     2041 atttaaaaaa tacatggttt acactacgat tggtttgtca atttgtctag gcttatctct
     2101 agttttggtt cacactacga aaatttatat ggacgaaggt ggcgtaagat actattacgg
     2161 tagttttgta atgaaacaag cgggcggtta tgcttattta gctttagcgg tactttcaac
     2221 gttgttaatt gttgcgaaaa aagctacaaa taaaaataaa gaaatcgaaa ccgtcgacaa
     2281 tacaaatata acggaaagat aattaaggga gtgctcattc aggagtgctc ttttttgatg
     2341 tccaaattta gttgcaaatg aaggcataga agaaattttt atagtcattt attggataat
     2401 gaattatggt catatcgatt aattttatta gtgaggattt tacaaacatt tgttgaataa
     2461 atatggtaat gataatatat gaatattttt gaaaaaacac taatatgatt aaattatttg
     2521 ttaaaatagc attaagtaaa aaacaaatag ggaacaaggt gggatttcat gagtcaattg
     2581 ctaaatgata cgttatcggc ttggttgtta attgaatctt taagtccagg agaagtaaat
     2641 tttacagcgg aagatatact ctcagctgaa cattttaaaa atggtgcaaa gcaagcacaa
     2701 cttcaaagtt ttgatgaata ttttgaaata tggaatgctg aacgctttat tatatcagaa
     2761 gaaaaatcag agactgggga acttatattt aaattttata gacattgctt ccgctataat
     2821 gaaattaatt tgaaaattca ggatattttt gatgattatt ctgagattca taatccaaat
     2881 gggacacact gttatggtta cacatttaac acagataaac acggcaaagt gatagttgat
     2941 tctatacata ttccgatgat tatgagtgca ttaaaagaaa ttgaaaagaa caaaaatgcc
     3001 aatatagaag aaaaatttaa tgattctgtt gaaaaatttg ttcaaaaagt aaaagaaatt
     3061 ttagcagatg aaccaattaa tgaatttaaa ttgaagaaga tggacaaagc ttatgatgag
     3121 tacttttctg tattaaattc aaagaaagat ggattatttg gacattatgt agcaatagaa
     3181 tatgtgaaag atagtgattt accacagccg gaatttaaca gcttcttcat aagtgatatt
     3241 gagaaagcaa gaaaatctcc caaccaaact ttaattgatt acattgaagg tgtagaagaa
     3301 agtcagcaca tagaagtaga tgaaaataaa gaaatgtttg acaaattttt acatccttca
     3361 cgtttgcctg atggacgatg gccatcacag actgagttta gattgtcttt aatgcaacaa
     3421 cttgctgtaa accaaattac gagtggtaat gaaagaataa gttcagttaa tgggccacca
     3481 ggtacaggta agactacttt attaaaagat atatttgctc atctagtagt tgaaagaggt
     3541 aaagagttag ctaaactaaa taatcctaaa gatgcatttg tcaaaacaaa aattcatgaa
     3601 acggatgata aatacgtata cttactaaag gaatctattg ccaaatataa gatggtagtc
     3661 gcatctagta ataatggagc tgttgaaaat atatctaaag atttaccgaa aattgaagaa
     3721 attataagaa atcccgaaaa atgtaaattc cctaaatatg aacagaatta tgcaaattta
     3781 gcacatgaat taaaagattt tgctgaaata gctgaagatt tgattggtga aagtgcctgg
     3841 ggcttatttt ctggagtttt tggtaaaagt actaatatta accaagtatt gagtcatatg
     3901 ttaaaacaag atgcgaatga tattggcttt gctaaattac tacaaaatga gaataatcgt
     3961 atgagttata acgagttaat gagtgaatgg caatcacatc aacgtgcatt tttagaagag
     4021 ttgaggcatg ttgaaatgtt aaaagaagaa tctattagag catatgatgt ttataaaaat
     4081 tgtgagtctt tctctaagat tgaacaggtt attaatagtg aaaaaacaag tattgaagaa
     4141 caggtatatc atttagataa tgaaacgtta cgagacaata aagaaataga agatttggat
     4201 aatcgaatta attatattgt taagcaaata gaaactttaa atgagttaat taaatccatc
     4261 aaagaaagca acaaaggttt tattaacaaa ctgaaagcga tgtttaattc agaagaagat
     4321 gaaagctata aagatcataa taaagagaag caacaattat taacacaaca gttagagtta
     4381 gagaaatgta aaaaaaacaa acatgaagac cttgttagca aactaaaaga aaaagagaaa
     4441 ttaattaaac aattaactaa agtacagttg caattagacg agttaaattc acagttacaa
     4501 gagttagaag catatcgtat tgagtcaaaa attacaattc cagaaaaaga tttttggagt
     4561 gacaacaatt atgatgagcg ccaagttact aatctgtgga cgagtgacga acttcaatac
     4621 agacgtgcca tgctcttttt aagagcaatg atattgcata aattattatt gattgctaat
     4681 aatacaacta tttattatgc gattaatgat tttaaagata gaaggaaatt aattgatgca
     4741 aatccagata aagtacacaa cgcatggaat gtgatgcatt taatatttcc agtagttagt
     4801 acgacgtttg caagctttaa atctatgtat gggggcatac caaaagattt catagactac
     4861 ttatttattg atgaagcagg acaagcaata cctcaagcag ctgtgggagc attatatcgt
     4921 tcaaaaaaag ttgtagctgt aggtgatccg attcaaatag aaccggttgt gactttagaa
     4981 agtcatttaa ttgataacat tcgtaaaaat tatcatgttc cggaatatct agtttctaaa
     5041 gaagcttctg tgcagtctgt tgcagacaac gccaatcaat atggtttttg gaaatctgat
     5101 gctactgata gtaatcaaaa aacctggata ggcatacctt tatgggtgca cagacgatgt
     5161 ttaaaaccta tgttcacgat agctaaccaa atcgcttata ataataaaat ggtgttgcca
     5221 agtaatatta caaaagtagg taaaacaggt tggtatgacg ttaaaggaaa cgcagttcaa
     5281 aaacaatttg tgaaagagca tggtgaaaaa gtagtgggat tattagctga tgattggatt
     5341 gaagcaatta aggaaggtaa aaatgaaccg agctcatttg taatatcgcc tttttcagca
     5401 gtacagcaac agattaaacg tatgttaaag caacaactac cgactagaat tgatattgaa
     5461 cgtacaaaaa ttaatcaatg ggtcgataaa tccattggta ctgttcatac ttttcaaggt
     5521 aaagaggctc agaaggtgta ttttgtaata ggtactgata atacccaaga tggtgctgtg
     5581 aactggtcat gcgaaaaacc aaacttgtta aacgttgcag tgacaagagc taagaaagag
     5641 ttttatgtaa ttggcgacat gcaaagaata cagatgaaac cattttatga gacgattttt
     5701 aaagaaagaa atgtaaaata acatacaaaa aagtatatag aggaagttat acattttaaa
     5761 aggagcaaaa ttgaataatg gagaaattta acaactggat attaaatgca ataagtggat
     5821 ctcaaacaga caagaatgaa acaactgaag aattaaaagg ggcaaaattt atcattttat
     5881 atgcatattc aatgctcgtt ttgcttgcgt tagtaatttc taacatattc attcacattt
     5941 tggagcctaa actatcaatc accactcaaa tcatcatcgt tttgatttta attgaagcac
     6001 taattggact gcgtttcttg aaagcgtacg atgttaagcg tggcaaagat aaagaaaata
     6061 agaaaaatag taaggatttc gttaaactaa aatcaatttt agtagcaatt ttatttacat
     6121 cattggcgct gacagcaggt actgtagctg atatatacgg tttcactgac ttaggaaata
     6181 ctagaagtga tttaatcgtt tggagcatag gtggtattat atttggcctc gtatgttaca
     6241 caatggaaga taaaagataa cgataaggag ctggcgatta taaagctagc tcctttttta
     6301 acttatatat gtaaagaact atcctaaggg tttttaatca tatgtcaata atttctataa
     6361 tacattatta aaacatcaat taaataagtt ttaaaatttt acacatattt ttatttaaaa
     6421 aagatgtata attaatgtat taaatataga aagaagttga tattatgaaa aagtgtatta
     6481 agactttgtt tttaagtatc attttagtag tgatgagtgg ttggtatcat tcagcacatg
     6541 cgtcagattc gttgagtaaa agtccagaaa attggatgag taaacttgat gatggaaaac
     6601 atttaactga gattaatata ccgggttcac atgatagtgg ctcattcact ttaaaggatc
     6661 cagtaaaatc agtttgggca aagactcaag ataaagatta ccttacccaa atgaagtcgg
     6721 gagtcaggtt ttttgatatt agaggtagag caagtgctga taatatgatt tcagttcatc
     6781 acggcatggt ttatttgcat catgaattag gaaaatttct cgatgatgct aaatattact
     6841 tgagtgctta tccaaacgaa acaattgtga tgtctatgaa aaaggactac gatagcgatt
     6901 ctaaagttac gaagacattt gaagaaattt ttagagaata ttattataat aacccgcaat
     6961 atcagaatct tttttacaca ggaagtaatg cgaatcctac tttaaaagaa acgaaaggta
     7021 aaattgtcct attcaataga atggggggta cgtacataaa aagtggttat ggtgctgaca
     7081 cgtcaggtat tcaatgggca gacaatgcga catttgaaac gaaaattaat aatggtagct
     7141 taaatttaaa agtacaagat gagtataaag attactatga taaaaaagtt gaagctgtta
     7201 aaaatttatt ggctaaagct aaaacggata gtaacaaaga caatgtatat gtgaatttct
     7261 tgagtgtagc gtctggaggc agcgcattta atagtactta taactatgca tcacatataa
     7321 atcctgaaat tgcaaaaacg attaaagcaa atgggaaagc tagaacgggt tggctgattg
     7381 ttgactatgc aggatatacg tggcctggat atgatgatat cgtaagtgaa attatagata
     7441 gtaataaata aggattcaat aatgatatta agacgagtat gaaaatagtt agattctaat
     7501 tattttcact actcgttttt attttgaaaa taagtaataa ttcaacaata ttataaattg
     7561 aacagattgt ttgtgaaatt tttgataata ttaaagtgaa aaagtgttat aaattgataa
     7621 atatatgtaa ttaacaaaaa caaataattt taaaaagaag agagttgtaa gatgatgaaa
     7681 cgattaaaca aattagtgtt aggcattatt tttctgtttt tagtcattag t
//
LOCUS       DAMQWL010000106         7604 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.107, whole genome shotgun sequence.
ACCESSION   DAMQWL010000106 DAMQWL010000000
VERSION     DAMQWL010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7604
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.107"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..1116)
                     /gene="hflX"
                     /locus_tag="PF788_002176"
     CDS             complement(<1..1116)
                     /gene="hflX"
                     /locus_tag="PF788_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDG6304424.1"
                     /translation="MAQQQIHDTKNKLEKAVLVGVHAQDDKQFNFESTMEELSSLSET
                     CQLEVLGQITQNRDRVDRKYYVGKGKIEEIQAFIEFKDIDVVITNDELTTAQSKSLNE
                     ALGVKIIDRTQLILEIFALRARSKEGKLQVELAQLDYLLPRLQGHGKSLSRLGGGIGT
                     RGPGETKLEMDRRHIRTRMNEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGK
                     SSWFNVLANEETYEKDQLFATLDPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFK
                     STLEEAKGADLLVHVVDSSHPEYRTQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHAS
                     NRPASDLPNVFVSSKNDGDKLLVKTLFIDEIKRQLTYY"
     gene            1228..1704
                     /locus_tag="PF788_002177"
     CDS             1228..1704
                     /locus_tag="PF788_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDG6304425.1"
                     /translation="METIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFTSQFEG
                     LQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEH
                     QLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL"
     gene            complement(1926..2159)
                     /gene="hfq"
                     /locus_tag="PF788_002178"
     CDS             complement(1926..2159)
                     /gene="hfq"
                     /locus_tag="PF788_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDG6304426.1"
                     /translation="MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVV
                     SLNSQGKQHLIYKHAISTYTVETEGQASTESEE"
     gene            complement(2174..3109)
                     /gene="miaA"
                     /locus_tag="PF788_002179"
     CDS             complement(2174..3109)
                     /gene="miaA"
                     /locus_tag="PF788_002179"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDG6304427.1"
                     /translation="MNKNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYK
                     HMNIGTAKVTPEEMDGIPHHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAG
                     GTGLYIQSLIYNYELEDETVTPAQLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENI
                     HPNNRQRVLRAIEYYLKTKKLLSNRKKVQQFTENYDTLLLGIEMSRKTLYSRINKRVD
                     IMLDHGLFREVQQLVEQGYESCQSMQAIGYKELIPVINGQMIYEDAVNDLKQHSRQYA
                     KRQMTWFKNKMSVHWLDKENMSLQMMLDEITTQIK"
     gene            complement(3127..4041)
                     /locus_tag="PF788_002180"
     CDS             complement(3127..4041)
                     /locus_tag="PF788_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6304428.1"
                     /translation="MTEKQFKLTVQDNTNIEVKVNFTDVDSKGIIHIFHGMAEHMERY
                     DKLAHALSKHGFDVIRHNHRGHGINIDESTRGHYDDMKRVIGDAFEVAQTVRGNVDKP
                     YIIIGHSMGSVIARLFVETYPQYVDGLILSGTGMYSLWKGLPTVKVLQLITKIYGAEK
                     RVEWVNQLVSNSFNKKIRPLRTQSDWISSNPIEVDNFIKDPYSGFNVSNQLLYQTAYY
                     MLHTSQLKNMKMLNHAMPILLVSGYDDPLGDYGKGILKLANIYRKAGIKNVKVNLYHH
                     KRHEVLFEKDHDKIWEDLFKWLNQFYKK"
     gene            complement(4191..5864)
                     /locus_tag="PF788_002181"
     CDS             complement(4191..5864)
                     /locus_tag="PF788_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDG6304429.1"
                     /translation="MALSTFKREHIKKNLRNDEYDLVIIGGGITGAGIALDASERGMK
                     VALVEMQDFAQGTSSRSTKLVHGGLRYLKQFQIGVVAETGKERAIVYENGPHVTTPEW
                     MLLPMHKGGTFGKFSTSIGLGMYDRLAGVKKSERKKMLSKKETLAKEPLVKKEGLKGG
                     GYYVEYRTDDARLTIEVMKRAAEKGAEIINYTKSEHFTYDKNQQVNGVKVIDKLTNEN
                     YTIKAKKVVNAAGPWVDDVRSGDYARNNKKLRLTKGVHVVIDQSKFPLGQAVYFDTEK
                     DGRMIFAIPREGKAYVGTTDTFYDNIKSSPLTTQEDRDYLIDAINYMFPSVNVTDEDI
                     ESTWAGIRPLIYEEGKDPSEISRKDEIWEGKSGLLTIAGGKLTGYRHMAQDIVDLVSK
                     RLKKDYGLTFSPCNTKGLAISGGDVGGSKNFDAFVEQKVDVAKGFGIDEDVARRLASK
                     YGSNVDELFNIAQTSQYHDSKLPLEIYVELVYSIQQEMVYKPNDFLVRRSGKMYFNIK
                     DVLDYKDAVIDIMADMLDYSPAQIEAYTEEVEQAIKEAQHGNNQPAVKE"
     gene            complement(6022..7518)
                     /gene="glpK"
                     /locus_tag="PF788_002182"
     CDS             complement(6022..7518)
                     /gene="glpK"
                     /locus_tag="PF788_002182"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDG6304430.1"
                     /translation="MEKYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWV
                     EHDANEIWTSVLAVMTEVINENDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAIVW
                     QSRQTQSICSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLL
                     FGTIDTWLVWKLSGKAAHITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKA
                     SSEVYGKTIDYHFYGQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGD
                     KAVKSESGLLTTIAYGIDGKVNYALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATR
                     VDSTEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVME
                     AMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLAV
                     GFWESKDDIAKNWKLEEKFDPKMDEGEREKLYRGWKKAVEATQVFKTE"
BASE COUNT         2321 a         1466 c         1056 g         2761 t
ORIGIN      
        1 ataataagtt aattgccttt tgatttcatc aataaataac gtcttaacaa gtaatttatc
       61 accatcattt ttagaagaaa caaaaacatt aggcaaatca cttgctggac gatttgatgc
      121 atgatcacat aagtcctttt tattaaaaat aactatttga gaaatatgac tcatatctaa
      181 ttgtttgatt aaatcattaa ctgtgtcata ctgcgtacgg tattcaggat ggctactatc
      241 tacgacatgt actaataaat ctgcaccttt agcctcttct aaagttgatt taaaagctgc
      301 aattaacgtc gtaggtagtt tctgtataaa accaacagta tctgaaataa ttaaattaaa
      361 tccatcattt atttgaattt gtcgtgtttt aggatctaac gttgcaaata attgatcttt
      421 ttcatacgtc tcttcatttg ctaaaacatt aaaccatgat gatttaccag catttgtata
      481 accaactaaa gctacttgaa acacctgatt ttgatttctt ttatttcgat atctttcgcg
      541 atgttcttct accgtccgca attgatgttt aatttcattc atacgagttc gaatatgtct
      601 gcgatccatc tctaacttcg tttcaccagg gcctctagtt ccaataccgc cacctaaacg
      661 agaaaggctt ttaccatggc cttgcaatct aggtaataaa taatcaagtt gtgctagctc
      721 tacttgcaat ttaccttctt tacttcttgc tcttaatgca aatatttcaa gaatcaactg
      781 agttctatca ataattttta cacctaaagc ttcatttagt gatttggatt gtgcagtcgt
      841 taattcatca tttgtgatga ctacatcaat atctttgaac tcaataaatg cttgaatttc
      901 ttcaatttta cctttaccaa cataatattt gcgatctaca cgatctctgt tttgagtaat
      961 ttgacccaac acttcaagtt ggcaagtctc tgataaagat gataattcct ccattgtaga
     1021 ctcaaaatta aattgcttat catcttgagc atgtacaccg actaagacag ctttttctag
     1081 tttattttta gtatcatgaa tttgttgctg agccatgtta tacatctcct taataaaatc
     1141 ctactcaaag tattctatca tagagtttta gtaaagacta ttacacgatt ttgtggtaca
     1201 ttttaagtaa atcgaaagga tgatacaatg gagacaattt atgattttgt agtagaaaca
     1261 aataaaggtg ttacttacaa attagatgca tataagggtg acgttatgct aattgttaat
     1321 acagctagcg aatgtggctt tacttcacaa tttgaaggtt tgcaatcatt atacgagaaa
     1381 tacaaagatc aagggtttgt aattctaggt ttcccttgta atcaatttgg tggccaagaa
     1441 cctggttcag gcgaagaagc agctcaaaac tgtaaattaa actatggtgt taccttccct
     1501 atgcatcaaa aaatagacgt aaaaggggaa catcaattac ctttatttag atatttgact
     1561 gcggcacaac acggattctt taatgagaaa atcaaatgga atttcactaa gtttttagtg
     1621 gatcgcgaag gtaacgttgt taaacgattt gcacctcaaa aaaaacctgt tcaaatcgaa
     1681 agagaaatag aaaaattatt ataaaatata ctagctcata gcaaataaaa cgcttcatat
     1741 aaagtcgtat catatattga ctcgaccttt atatgaagcg tttttattac aaacattcct
     1801 ctattgtatc ttgtcatttg aacatcattt aattgatgtc acatatgact ttatttctat
     1861 atctatttat catacttcaa acgttatgta cacgagtcat taaatcgtgc ccatatgatt
     1921 acaacttatt cttcactttc agtagatgct tgaccttcag tttctactgt ataagtgctg
     1981 atcgcatgtt tgtaaatcaa gtgttgtttg ccttgagaat ttaagcttac gacatacttg
     2041 tcgtattctt caataacacc tttcatttgg aaaccgttta gaaagaatac agttacttca
     2101 gtttggtttg ctttaaaatt ctctagtgct ttgtcttgga tgttttcgtt tgcaatcatc
     2161 tgtcggactc cttttactta atctgggttg taatctcatc taacatcatt tgaagtgaca
     2221 tattttcttt atctaaccaa tgaacactca ttttattctt gaaccatgtc atttgtcgtt
     2281 ttgcatattg gcgtgaatgt tgctttaaat cattgacagc atcttcataa atcatttgtc
     2341 cgttaatcac aggtattaat tctttatatc caatagcttg catactttgg caagattcat
     2401 agccttgttc aacaagttgt tgcacttctc taaataatcc gtgatccaac ataatatcaa
     2461 cacgtttatt tattcttgaa tataatgttt tacgcgacat ttcaatccct aataataatg
     2521 tatcataatt ttcagtaaat tgttgcactt tcttgcgatt actcaaaagt ttttttgttt
     2581 ttaaataata ttcaatagcg cgcaacactc tttggcggtt gttagggtga atattttctg
     2641 cagaaaccgc atcaaattga gctaaataat cgtgtagttg ctgattatct aaatgttcta
     2701 atgcagataa cttttgttta actatggata attgtgcagg tgtaactgtt tcatcttcta
     2761 attcataatt atatattaat gattgaatat ataagcctgt tccacctgct atgattggaa
     2821 ctttacctct attcgttata tcagtaatta aatcttctgc taatcgcttg aattcatatg
     2881 ctgaaaatgt atcatcagga ttcaagatat caattaaatg atgtggaata ccatccattt
     2941 cttcaggtgt tacttttgca gttccaatat tcatatgttt gtagacttgc atagagtcac
     3001 cgcttatgat ttcaccattg atacgcttcg cgagttcgat gctaagctct gttttacctg
     3061 aagcagttgg ccccacaatt actacaataa aaggcttatt tttattcata tttaattcca
     3121 ctttctttat tttttataaa attgattcaa ccatttaaac aagtcttccc aaattttgtc
     3181 atgatctttt tcaaataaca cttcatgacg tttatgatga taaagattca ctttaacatt
     3241 tttaatgcca gcttttctat atatattcgc caattttaaa atccctttac cataatcacc
     3301 taaaggatcg tcatatcctg aaactaataa tataggcatg gcatgattta acattttcat
     3361 attttttaat tgtgatgtat gtagcatata ataggctgtt tgatataata attgatttga
     3421 cacattaaat ccactatatg gatctttaat aaagttatct acttcaattg gattactaga
     3481 aatccaatca ctttgtgtac gtaatggacg tattttttta ttaaaactat ttgatactaa
     3541 ctggttaacc cattcaactc gtttctcagc accataaatt tttgtaatca gttgtaacac
     3601 tttaacggtt ggtaaacctt tccataatga atacatacca gtaccactta aaattagacc
     3661 atcaacatat tgcggatatg tttctacaaa caatctagct ataacggatc ccattgaatg
     3721 tccgattata atgtatggtt tatcaacatt gcctctcact gtttgcgcta cttcaaaggc
     3781 atcaccgata actcgtttca tatcatcgta atgccctctt gttgattcat caatattaat
     3841 accatgtcct cgatgattat gacgtatcac atcgaagcca tgctttgaaa gtgcatgtgc
     3901 taatttatcg taacgttcca tatgttcagc cataccatga aatatatgaa taattccttt
     3961 tgaatctaca tctgtaaaat tcactttaac ttcaatattc gtattatctt gtacagttaa
     4021 tttaaattgt ttttcagtca tcatctcaca cctttaataa caacgctttt atattcgctt
     4081 ttattattat catacattta gtgatgcata gtttcaattg actaatgtat ctcgtataaa
     4141 aaaactgatg cccttaaaac aggacaccag tttatgattg tacaaattaa ttattcttta
     4201 actgctggtt gattatttcc atgttgcgct tctttaattg cttgctcaac ttcttcagta
     4261 tatgcttcaa tttgagctgg agagtaatca agcatatctg ccataatatc gatgacagca
     4321 tctttataat ctaatacatc tttaatattg aaatacattt taccagaacg acgaactaag
     4381 aaatcgttag gtttgtatac catttcttgt tgaatactat aaacaagttc tacataaatt
     4441 tctaatggta acttgctatc atggtattga gatgtttgcg caatgttgaa caattcatca
     4501 acatttgaac catatttaga tgctaaacgt cttgcaacat cttcatcaat gccgaatcct
     4561 ttagctacat ctactttttg ctctacaaac gcatcaaagt tcttgctacc acctacatcg
     4621 ccacctgaaa ttgccagacc ttttgtatta catggactaa atgttaaacc gtagtctttt
     4681 ttcaagcgtt tagatactaa atcaacaatg tcttgagcca tgtgacgata gcctgttaat
     4741 ttaccacctg caatagttaa taaacctgat ttaccttccc aaatttcatc cttacgagag
     4801 atttcagaag ggtctttgcc ttcttcgtaa attaatggtc taattcctgc ccatgttgat
     4861 tcaatatctt catctgtaac attaacacta gggaacatgt aattaatcgc atcgattaaa
     4921 tagtctctgt cttcttgtgt agttaatggt gaagatttga tattgtcata gaatgtatct
     4981 gtagtaccta catacgcttt tccttcacgt ggaattgcaa aaatcattct tccatctttt
     5041 tcagtatcaa agtatactgc ttgacctaat gggaattttg attgatcaat aacaacatgt
     5101 acacctttag ttaaacgtaa ttttttatta ttgcgtgcat aatcaccact tctaacatca
     5161 tcaacccatg gacctgctgc attaaccact tttttagcct taattgtata attttcatta
     5221 gttaatttat ctataacttt aacaccattt acttgttgat ttttatcata agtgaagtgt
     5281 tcagatttag tatagttgat aatttctgcg cctttttcag cagcacgctt cataacttca
     5341 atagttaaac gcgcatcgtc agtacgatat tcaacatagt aaccgccgcc ttttagacct
     5401 tcttttttaa ctaatggttc tttagctaaa gtttcttttt tagataacat ttttttacgt
     5461 tcagacttct taacacctgc taaacgatca tacattccta aaccaattga tgttgagaat
     5521 ttaccaaatg ttccaccttt atgcattggt aaaagcatcc actctggagt cgtaacatga
     5581 ggcccatttt cataaacaat cgcacgttct ttaccagttt cggcaactac tccaatttgg
     5641 aattgtttta agtaacgcaa accaccatgg actaattttg tagatcttga gcttgttcct
     5701 tgtgcaaagt cttgcatttc aactaatgca actttcattc ctctttcact cgcgtctagt
     5761 gcaatacctg cacctgtaat accgccacca ataattacta aatcatattc atcatttctt
     5821 aaattctttt taatatgttc tctcttaaaa gtagacaatg ccattccaaa acgcctccta
     5881 aaaaatgtaa aaacgagaga cttgtcccac ataaacaatc cttcaattgt acatgttcga
     5941 acaaatctct cgcttctcga ttcaaatatt aacttaaatt gattgtatca caatgtttat
     6001 acaaaagtct aatctacaag tttattctgt tttaaaaact tgtgttgctt caacagcttt
     6061 tttccaacct ctatataatt tttctctttc gccttcatcc attttcggat cgaatttttc
     6121 ttctaatttc cagtttttag cgatatcatc tttactctcc cagaatccaa ctgctaaacc
     6181 tgctaaaaat gcagcaccta aagctgtagt ttcttgaatt tcaggtcttt caacagaagt
     6241 attaacaatg tctgcttgga actgcataat aaagttattt ttaactgcac caccatcgac
     6301 acgtaaactt tggacatcaa taccagagtc ttttgacatt gcttccataa cgtcacgagt
     6361 ttggtaacat agtgattcta aagttgcacg gataaagtgc tctttttcag ttccacgtgt
     6421 taaaccgaaa atcgcaccac gtgcttcaga atcccaatat ggtgttccta aacctacaaa
     6481 agctggaaca acataaacac cctcagtaga gtcaactcgt gtcgcataac tttctgattg
     6541 tggtgctgaa ttaatcattc ttaatccatc acgtaaccat tggattgctg aacccgaaac
     6601 aaagatggaa ccttcaagcg cataatttac ttttccatca ataccataag caattgttgt
     6661 taataaacca ctttcagatt taaccgcttt gtcacctgta ttcattaaca tgaagccacc
     6721 agttccatat gtgtttttca cgtcaccacg ttcgaagcaa gcttgtccaa ataatgctgc
     6781 ttgttgatca ccagctactc cagcgattgg tacttcttga ccatagaagt ggtaatcaat
     6841 tgtcttacca tatacttcac tcgaagcttt aacttctggc aacatatttt taggtactgt
     6901 aagtagttct aataactcat cgtcccattc taaatcatgg atattaaaca ttaatgtacg
     6961 actcgcattt gaataatcag taatatgcgc agcttttcct gataatttcc atactaacca
     7021 agtatcaatc gttccaaata atagatcgcc attttctgct ttttctcgtg caccttcaac
     7081 attgtctaga atccatttaa cttttgtacc tgcaaaatac ggatctaaaa gtaatcctgt
     7141 cttatctcta aatgtttgtt catatccttg ttgttttaat tctgaacaaa ttgattgtgt
     7201 ttgacgtgat tgccaaacaa ttgcgtgata aattgggcgg ccagtatgtt tgtcccaaac
     7261 aaccgttgtt tcacgttggt ttgtaatacc gatacctgca atttgatcag ctctaacatc
     7321 attttcatta attacttccg tcattacagc taacacagat gtccaaattt catttgcatc
     7381 atgttcaacc caacctgatt gtggaaaata ttgcttaaac tcacgttgtg ctacccctgc
     7441 aatttcccct ttttgattga ataaaatcgc tcttgagctt gttgttcctt ggtctataga
     7501 taaaatatat ttttccatta gtagtatctc ctttattaaa aaataatcgc taacccattg
     7561 tacaaaatct gttaaatttt ggcgaaaaaa tagcataatc catg
//
LOCUS       DAMQWL010000107         7596 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.108, whole genome shotgun sequence.
ACCESSION   DAMQWL010000107 DAMQWL010000000
VERSION     DAMQWL010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7596
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.108"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            167..511
                     /locus_tag="PF788_002183"
     CDS             167..511
                     /locus_tag="PF788_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002498160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HDG6304431.1"
                     /translation="MAVNLYDYANQLEQALRESEEYKAIKEAFANVKANEESKKLFDE
                     FRETQINFQQKQMQGEEIAEEDLQKAQEQAQAIEKDENISALMNAEQKMSQVFQEINQ
                     IIVKPLDEIYAD"
     gene            894..992
                     /locus_tag="PF788_002184"
     CDS             894..992
                     /locus_tag="PF788_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304432.1"
                     /translation="MPFDSLAVLITTEIAFPTEIFEKYQRTLQIKF"
     gene            1283..2479
                     /locus_tag="PF788_002185"
     CDS             1283..2479
                     /locus_tag="PF788_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HDG6304433.1"
                     /translation="MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDI
                     ALQQDVDFVIIAGDLFDSENRTLRAEIFLKQQFERLQNEQIFVYVCHGNHDPLSSKIS
                     SNWPDNVSVFSNKVETYEAITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHI
                     GVLHGTYSKSSVNERYTEFILEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGR
                     HFNEQGEKGCLLIEGDHLKLKTKFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQV
                     REEGKAFYRLTLVINSETLISPQDLLQVEEMITDYEENENQFVYIDELKIQYAQNDES
                     PLVNEFSAELLVDQTVFDKAMSDLYLNPRASKFLDDYGTFDHTALVNRAEEILKAEMR
                     GEQNDN"
     gene            2469..5405
                     /locus_tag="PF788_002186"
     CDS             2469..5405
                     /locus_tag="PF788_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDG6304434.1"
                     /translation="MIIKSLEIYGYGQFVQRKIEFNKNFTEIFGENEAGKSTIQAFIH
                     SILFGFPTKKSKEPRLEPRLGNQYGGKLVLILDDGLEIEVERIKGSAQGDVKVYLPNG
                     AVRDDAWLQKKLNYISKKTYQGIFSFDVLGLQDIHRNLNEKQLQDYLLQAGALGSTEF
                     TSMREVINRKKDELYKKSGKNPIINQQIEQLKQLESQIREEEAKLETYHRLVDDRDKS
                     SRRLENLKHNLNQLSKMHEEKQKEVALHDHSQEWKSLEQQLNIEPITFPEKGVDRYEK
                     ARAHKQSLERDIGLRNERLAQLKEEATQLEPVKQSDIDAFISLNQQENEIKNKEFELT
                     AIEKDIANKQRDKDELQSNIGWSETHHDVDSSEAMKSYVSEQIKNKQEQAAYIKQLER
                     SLEENKIEDNAVHSELDSVEEKIVPEETFEKKKEYSQQVIELNEKENLYSKLKERFEI
                     EQQEKQKRQKLLRTTFILLTLVGIGLTAFSFISNNMLFGIIFAVLTLVFVIGIIMSKS
                     KEVDYSEAITDEIEEIKAQLAILDENYDLDFDLDEQYRIRDHWQQALKNKDILEEKRQ
                     YIEGRLNDAKGRHDELQSTVENVKDELYLSSKISNDLIVDSISTMANIKALDQHISDL
                     NQQRQQLVQELDTFYNHAEAVTKSQFVYFNKLSLFHDVQQWLKSAEDTNEKWRINAEN
                     TKLVTNELNHLNAQLEENNKEITALFDFINVGTEEDFYQHHEDYQTYTSNLSRFNDLT
                     KYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQVSDLSAQINH
                     METDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRLPQVINEAV
                     EILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISLIKVLRP
                     YYPFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEVITLNKI
                     EEGGKR"
     gene            5402..6343
                     /gene="yhaM"
                     /locus_tag="PF788_002187"
     CDS             5402..6343
                     /gene="yhaM"
                     /locus_tag="PF788_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM"
                     /protein_id="HDG6304435.1"
                     /translation="MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGE
                     IEAKFWTATKNDMATIKPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVD
                     GAPLSPAEIQEEISHYLLDIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLS
                     YHVLTMLRIAKSICDIYPLLNKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHI
                     SIASDEVVEAARELNIEGEEIMLLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNID
                     ARMNMFEKAYKKTDKGQFTDKIFGLENRRFYNPESLD"
     gene            complement(6464..7426)
                     /locus_tag="PF788_002188"
     CDS             complement(6464..7426)
                     /locus_tag="PF788_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="foldase"
                     /protein_id="HDG6304436.1"
                     /translation="MKMINKLIVPVTASALLLGACGASATDSKENTLISSKAGDVTVA
                     DTMKKIGKDQIANASFTEMLNKILADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKAL
                     QQQGLTADKYKENLRTAAYHKELLSDKIKISDSEIKEDSKKASHILIKVKSKKSDKEG
                     LDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEK
                     ALFKLKDGEVSEVVKSSFGYHIIKADKPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAY
                     KDLLKEYDVDFKDRDIKSVVEDKILNPEKLKQGGAQGGQSGMSQ"
BASE COUNT         2789 a         1074 c         1301 g         2432 t
ORIGIN      
        1 aaattgctaa caaagaacta aagttgatta tgtcattagg tttcatttta ggtggtatta
       61 ttggattttt ccaaggtttg gttgcaatct ttgtctaaaa aagcgagatg tggtaaagta
      121 atatcgaacg ttttaataaa catcacaaca aaggagtgct ataaccatgg cagtaaattt
      181 atatgattat gcaaatcaat tagaacaagc tttaagagaa agcgaagaat acaaagcaat
      241 caaagaagca ttcgctaatg taaaagctaa cgaagaatct aaaaagttat tcgacgagtt
      301 ccgtgaaact caaattaact tccaacaaaa acaaatgcaa ggtgaagaaa ttgctgaaga
      361 agatttacaa aaagcgcaag aacaagcgca agcaattgaa aaagatgaaa acatctctgc
      421 attaatgaat gctgaacaaa aaatgagtca agtattccaa gaaatcaacc aaattatcgt
      481 taaaccatta gacgaaattt acgctgacta atattaaaat aatatttttc aatcctttaa
      541 atagaggaat agactgccga cagagtccga gactttgtgg gtagtttttt tagttttgat
      601 aacggaagtt agaggctctc tgtcaaattg ggcagatgca ttcagtaacg gaagttaggc
      661 tagtaaacgt gtcctaactt cctttttgca ttttgaagtg taaagttttc aacataatac
      721 tattagttcg gtcatgtatc ggactgatgg aaaagcgttt cacttttaat gactcattaa
      781 gaacggcctg aaaatgtttg gcgtattaag tgcaatgata gttttgacat ttagtttcta
      841 attggtcatt actgccgagc aaatctagta gagtaatcat gtaaatcttt aatgtgccat
      901 ttgattcact agcggtgtta ataactacgg aaattgcatt tccgactgaa atttttgaaa
      961 aatatcaacg tacgctacaa ataaaatttt aaactgttat aaatgtgtct caatttcata
     1021 tgttcatcga cgatatgaag cgtattatgg taaaatgaag aaataataaa cttgttaata
     1081 aataaaacat cacgatttga ctaaagcact ttattattgt gtagataata gttttttaac
     1141 gaaataaaaa tggcgactgg ttttaataaa tcagctaatg aatcactaca cctataagta
     1201 tgaatatagt gattagaatg ctttgtatag ttggattttg caaaattgat gttagaacct
     1261 ttaattaagg agatatggat gtatggttaa atttattcat tgttcggatt tacatttaga
     1321 tagtcctttc aaatctaaga gtcatataag ccctaaaatt tttgaggatg ttcaaaaaag
     1381 tgcttatgaa agttttaaaa atattgtaga tattgcatta caacaagatg ttgattttgt
     1441 aattatcgcg ggtgatttat ttgatagtga aaacagaaca ttacgtgctg aaattttctt
     1501 aaaacagcaa tttgaacgtt tacaaaatga acaaatcttt gtttatgttt gtcatggtaa
     1561 tcacgatcct ttatcatcaa agatttcatc aaactggcca gataatgttt ctgtattttc
     1621 aaataaagtt gagacgtatg aagcaattac taaatctggt gaaacaattt atattcacgg
     1681 atttagttat gaaaatagag caagttatga gaacaagatt gatgaatatc catcaagtca
     1741 aggccaaaaa ggcatacata ttggtgtctt gcatggtacg tatagtaaat cttcagttaa
     1801 cgaaagatat accgagttca ttttagaaga tttaaacagt aaattgtatc attattgggc
     1861 tttaggtcat atacatgaac gtcaacaatt aagtgatatg cctgtaatta actattcagg
     1921 taatattcaa ggtagacatt ttaatgagca aggtgaaaaa ggttgcttat taatcgaggg
     1981 tgaccactta aaattaaaga ctaaatttta tcctacacag tatattagat ttgaagaagc
     2041 aactattgaa acggataaga catctaagca aggtttatac gaggtcattc aaaactttaa
     2101 agaacaagtg agagaagaag gaaaagcctt ttatcgttta acgcttgtta ttaatagtga
     2161 gacattaatt tcacctcaag atttattaca agttgaagaa atgattacag attatgaaga
     2221 aaacgaaaat caatttgtat atattgatga gttaaaaata caatatgcac aaaatgatga
     2281 gtcaccttta gttaatgaat tttcagcgga attattagtc gatcaaactg tttttgataa
     2341 agcgatgtca gatttatatt taaatccaag ggcatctaag ttcctagacg attatggaac
     2401 attcgaccat acagcattag ttaatcgtgc tgaagaaata ttaaaagctg aaatgagagg
     2461 tgaacaaaat gataattaaa tcacttgaaa tttatggtta cggtcaattt gttcaacgta
     2521 aaattgaatt taataaaaac ttcactgaaa tttttggtga aaatgaagcg ggtaaatcga
     2581 cgattcaagc attcatccat tcgatattat ttggatttcc aactaaaaag tctaaagagc
     2641 caagactaga accacgtcta ggtaaccaat acggtggtaa attagtactt attcttgatg
     2701 atggcttaga gattgaagtt gaacgaatta aaggcagtgc tcaaggtgat gtgaaagtat
     2761 atttacctaa tggtgctgtg cgtgatgatg cttggttaca aaagaaactt aattatattt
     2821 ctaaaaagac atatcaaggt atcttttcat ttgatgtact agggcttcaa gacattcata
     2881 gaaatctaaa tgaaaaacaa ttgcaagatt atttattaca agcaggggct ttaggatcaa
     2941 ctgaattcac gtcaatgcgc gaagtgatta atcgtaaaaa agatgaatta tataaaaaat
     3001 caggtaaaaa tccgatcatt aatcaacaaa ttgagcaatt aaaacaacta gaaagtcaaa
     3061 ttcgtgaaga agaagcaaag ctagaaacat atcatcgctt agtagatgat cgagataaat
     3121 catcacgtcg attagagaat ttaaagcata atttaaatca attatcaaaa atgcatgaag
     3181 aaaaacaaaa agaggttgct ttacatgatc attcacaaga atggaagtct ctagaacaac
     3241 agttaaatat tgagccaatc acattcccag aaaaaggtgt ggatcgttac gaaaaagcac
     3301 gagcgcataa gcaatcgtta gaaagagata ttggtttaag aaatgagcgt ttagctcaac
     3361 ttaaagaaga agcgactcaa ttagagccag ttaaacaatc tgatattgac gccttcatta
     3421 gtttgaatca acaagaaaat gaaattaaaa ataaagaatt tgaacttact gcaatcgaaa
     3481 aggatattgc gaataaacaa cgtgataaag atgaattgca atcaaatatt ggttggtctg
     3541 aaacgcatca tgacgtagat agttcagagg caatgaaaag ttatgtcagt gagcaaatca
     3601 agaataaaca agaacaagct gcatacatta aacaattaga acgtagttta gaagaaaata
     3661 aaatcgaaga taatgcggtt catagcgaac tagattctgt tgaagaaaaa atagttcctg
     3721 aagagacttt tgaaaagaaa aaagaatact cacaacaagt cattgaatta aacgaaaaag
     3781 agaacttgta tagcaaattg aaagaacgtt tcgaaattga gcaacaagaa aaacaaaaac
     3841 gtcaaaaatt gttacgaaca acgtttattc ttttaacatt agtaggtatt ggtttaactg
     3901 ccttctcatt tatttcaaac aacatgttgt ttggtattat tttcgcagta ttaactttag
     3961 tatttgttat cggtatcatc atgtctaaat caaaagaagt agattatagc gaggccatca
     4021 cagatgaaat cgaagaaatt aaagcacaac tagccatttt agatgaaaat tatgacttag
     4081 attttgatct tgatgagcaa tatcgcattc gtgatcactg gcaacaagct ttgaaaaata
     4141 aagatatttt agaagagaaa cgtcagtata ttgaaggtcg tttaaatgat gcgaaagggc
     4201 gtcatgatga attacaatcg acagttgaga acgttaagga tgaattatac ttatcatcta
     4261 aaatttcaaa tgatttaatt gttgatagta tttctacaat ggcgaatatt aaagcattag
     4321 atcaacatat cagtgattta aatcaacaac gccagcaatt ggttcaagaa ttagatacat
     4381 tctacaatca tgctgaagct gttacaaaat cacaatttgt ttatttcaac aaattatctt
     4441 tattccacga tgtgcaacaa tggttgaaat cagctgaaga cacgaatgaa aaatggcgta
     4501 ttaatgctga aaataccaaa cttgttacaa atgaattaaa tcatttaaat gctcaattag
     4561 aagaaaataa taaagaaatt acagcactat tcgattttat caatgttggt actgaagaag
     4621 atttttacca acatcatgaa gattaccaaa cttatactag taatttgagt cgttttaatg
     4681 atttaactaa atatcttgag aaccaaaact attcttatga attaagttct agtttaagtg
     4741 aaaaaacaac tgcacaactt gaagaagaag atcatttatt ggctactcaa gttgacgaat
     4801 ataatgagca atatcttgaa atgcaagcac aagtcagtga tttaagtgca caaatcaatc
     4861 acatggaaac tgatacaacg cttgctaatt taagacatga atatcacagt cttaaaaatc
     4921 aacttaatga tatcgcaaaa gattgggcaa gtttaagtta tttacaaagt ttagttgatg
     4981 aacacattaa acaaattaaa gataaacgtt tgcctcaagt tattaatgaa gcggtagaaa
     5041 tattgaagca tttaacagat ggcagatata cgatgattaa ctataatgaa gattcaatta
     5101 cggttaaaca tgttaatggt caattatatg atcctgttga actaagtcaa tctacaaaag
     5161 aattacttta tgtagcttta cgtatcagtt taattaaggt actaagacca tattatccgt
     5221 tcccattaat tgttgatgat gcatttgttc attttgataa aaaacgtact gaaaaaatgt
     5281 tgaattattt acgatcatta tcagaacact atcaagtact atactttaca tgtgtaaaag
     5341 ataatattgt tccatcaaaa gaagtgatta cattaaacaa aatagaggaa ggcgggaaac
     5401 gatgagaaat atagagaatc taaatcccgg agattcagtt gatcactttt tcttagtgca
     5461 taaagctaca cagggtgtaa cagcacaagg taaagattat atgacattac atttgcaaga
     5521 taaaagtggt gaaattgaag cgaaattttg gacggctaca aaaaatgata tggcaacaat
     5581 caagcctgaa gaaattgtac atgttaaagg tgacatcata aactatcgcg gaaataaaca
     5641 gatgaaagtc aaccaaatta gactagcgac aactgaagat caattaaaaa cagaacaatt
     5701 tgtagatggt gcacctttat caccggcaga aatacaagaa gagatttctc attatttgct
     5761 agatattgaa aatgctaatt tacaacgtat cacacgtcat ttattgaaaa aatatcaaga
     5821 acgattttac acatatccag ctgctagttc tcatcatcat aactttgcga gtggcttaag
     5881 ctatcatgta ttaacgatgt tacgtattgc aaaatcaatt tgtgacattt atccattgtt
     5941 aaacaaaagt ttgttatata gtggtattat tttgcatgat attggtaaag ttagagaatt
     6001 gagtggtcct gttgcgacgt cgtatacagt cgaaggtaac ttattaggac acatctcgat
     6061 tgcgagtgat gaagtagttg aagcagctcg tgaattgaac attgaaggag aagaaatcat
     6121 gttgttaaga catatgattt tatctcatca tggtaagtta gagtatggtt ctccaaaact
     6181 gccatactta aaagaagcag aaattttatg ctatatcgat aatatcgatg ctagaatgaa
     6241 tatgtttgaa aaggcatata aaaaaactga caagggtcag tttacagata aaatatttgg
     6301 tcttgaaaat cgtagattct acaatcctga atcactcgat taagaattaa aagatatcgg
     6361 acagatgagt atactgaaac atgagctcat ctgtccgatt tttaatgcga aaaaaccgag
     6421 cggccgtggt atgatttttg aaccacggtc gctcggtttt gtgttattgg ctcatgccgg
     6481 attgtccgcc ttgtgcgcca ccttgtttaa gtttttcagg gtttaagatt ttatcttcga
     6541 caactgattt aatatcacga tctttaaagt caacatcgta ttcttttaat agatctttgt
     6601 atgcatcagt caataatttt ggattttttt gtactttctg atcgactaat ttttctttca
     6661 ggctttgttt ttcactgtta aagtctgttg gtttatcagc tttaataata tgatatccaa
     6721 agcttgattt aacaacctct gatacttcac catctttaag cttaaatagt gctttttcaa
     6781 aatctttatc agtttgtcct ttaagaacat aacctaattc gccatctttt ttagctgaac
     6841 cagtatccat tgattctttt ttagcgattt caccaaattt acttggatct tttgaaactt
     6901 ctttttgaat ttcttcagct ttttgtttcg cttctttatc atctaagcct tctttgtcgc
     6961 ttttcttaga tttaacttta attaaaatgt gtgaagcttt cttgctgtct tctttaattt
     7021 cagaatcaga gattttaatt ttatctgata gtaattcttt atgataagca gcagtacgta
     7081 aattttcttt atatttatcg gctgttaaac cttgctgttg aagggccttt tcaaatttat
     7141 ctttaccgcc gtattgcttt tgcatttttt caatttgttc gtcaatcttc ttatcattaa
     7201 ctttattttt atatttatca gctaaaattt tatttaacat ttcagtaaat gatgcatttg
     7261 caatttgatc tttaccgatt tttttcattg tatctgcaac tgttacgtct ccagctttag
     7321 aagaaattaa tgtattttct ttagagtctg tggcactagc gccacaagcg cctaataata
     7381 aagcactagc tgttaccgga acgattaatt tgtttatcat cttcatagtt gaaactcctt
     7441 tgtaagttaa tcatcgtgaa tataacatag ttttatatta tcaccaatca ataacccatg
     7501 acatcagact agagcattag gtttaggggt agaaattgat gaaaataaaa aaacaaggtc
     7561 tatatacatt tgattgtaag ctattacata gcctaa
//
LOCUS       DAMQWL010000108         7560 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.109, whole genome shotgun sequence.
ACCESSION   DAMQWL010000108 DAMQWL010000000
VERSION     DAMQWL010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7560
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.109"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(94..1077)
                     /locus_tag="PF788_002189"
     CDS             complement(94..1077)
                     /locus_tag="PF788_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001181101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator protein A"
                     /protein_id="HDG6304437.1"
                     /translation="MQNQYFTVQENYKERFYQIPKVFFTSENYKNLTNDMKIAYAILR
                     DRLNLSIKNSWVDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLENDGLLIQKRRGL
                     NKPNILYLMKPIVTERDIYKIEKEENDVEPYGEKEVRKSNVQKFENRTSRSSKIERPE
                     VRKSNTNDTDFNDIDFNDTENNDMNDLNDIKYKNEISNHSNHSNQFTHNFDDKEMLLQ
                     EFPEQLTNYLLKYDYRDLEIIKAVILKAKKSFNSRHEDMHYMLEDIEDEILTSLKRLK
                     KAIHDRGVKGQKETIKSMQAYLMQTILTELEETHALYMRRKNMKQYNIFNQ"
     gene            1503..2246
                     /locus_tag="PF788_002190"
     CDS             1503..2246
                     /locus_tag="PF788_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF536 domain-containing protein"
                     /protein_id="HDG6304438.1"
                     /translation="MKSVKKLSEELGVSKQTIFNNIKRLNIETIKQENTSFIKEDTDI
                     EKIIQRVNENKKKYGFESTTEDKQKKGSDNINFESKSDAQIVEILKNQIDTLNNQIEK
                     QESRHETTIEFYRKELQERSKLLENQQVLALESNKKIQKLENQLEKEKHLNYPFDTST
                     NTRQNVDAQEKTYTTNPVNINRDQEETKETEIQYKDISGSQSDESTQGEEAKKEDVPA
                     NLNDNDSDIEEKSEETEPKKGFWSRLFGS"
     gene            complement(2473..2658)
                     /locus_tag="PF788_002191"
     CDS             complement(2473..2658)
                     /locus_tag="PF788_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304439.1"
                     /translation="MKNRIREYRKQKGISQETLSKELKVSRQTINAIENNKYDPTLTL
                     AFKLARLFDTTVDELFS"
     gene            complement(2663..3001)
                     /locus_tag="PF788_002192"
     CDS             complement(2663..3001)
                     /locus_tag="PF788_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304440.1"
                     /translation="MNLIPFIIILIFSCLWTAITNKYLPSETLDKKGQQDRYDERQRK
                     MFIEILAKSFIWIVYCMLFTLVLKFTGLSPSIEGSWFSQYPEIFFIIVALFLMLFNYY
                     TTNKKYTSKG"
     gene            complement(3247..3855)
                     /locus_tag="PF788_002193"
     CDS             complement(3247..3855)
                     /locus_tag="PF788_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002474535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDG6304441.1"
                     /translation="MIIGYARVSSIDQNLERQLDNLKTFGVEKIFTEKQSGKSVENRP
                     VFQEALNFVRMGDRFVVESIDRLGRNYDEIIETVNYLKEKDVQLMITSLPMMNEVIGN
                     PLLDKFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSPNAKDPQ
                     KRVIYHRVVEMLEEGKAISKIAKEVNITRQTVYRIKHDKGLS"
     gene            complement(4341..5240)
                     /locus_tag="PF788_002194"
     CDS             complement(4341..5240)
                     /locus_tag="PF788_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000196697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mph(C) family macrolide 2'-phosphotransferase"
                     /protein_id="HDG6304442.1"
                     /translation="MTRHNEIIKCAEKYQLHIQPQTISLNESGLDFQVAFGKDKHGVE
                     WVLRLPRRPDVYKRTKPEKQTVDFLQKNVSFEIPKWKVHAKDLIAYPKLTGKPAATID
                     PEIQNYVWEIEHKPLPENFINTLAETLVDLHNIPEENINVQHINIKTIQEIKNDFQRR
                     MNKVKETYGVSDELWNRWKQWLENDELWPRHATMIHGDLHPGHIMVDNQANVTGLIDW
                     TEATHSDPSMDFIGHHRVFDDEGLEQLITAYGKAGGEIWPRMKEHIIELNAVFPMFIA
                     EFAMESGESAYETMALKELGMKE"
     gene            complement(5339..6805)
                     /gene="msr(A)"
                     /locus_tag="PF788_002195"
     CDS             complement(5339..6805)
                     /gene="msr(A)"
                     /locus_tag="PF788_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002447408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein Msr(A)"
                     /protein_id="HDG6304443.1"
                     /translation="MEQYTIKFNQINHKLTDLRSLNIGHLYAYQFEKIALIGGNGTGK
                     TTLLNMIAQKTKPESGTVETVGEIQYFEQLNMDVENDFNTLDGSLMSELHIPMHTTDS
                     MSGGEKAKYKLANVISNYSPILLLDEPTNHLDKIGKDYLKNILKYYYGTLIIVSHDRA
                     LIDQIADTIWDIQEDGTIRVFKGNYTQYQNQYEQEQLEQQRQYEQYISEKQRLSQASK
                     AKRNQAQQMAQASSKQKNKSIAPDRLSASKQKGTVEKAAQKQAKHIEKRMEHLEEVEK
                     PQSYHEFNFPQNKIYDIHNNYPIIAQNLTLVKGSQKLLTQVRFQIPYGKNIALVGANG
                     VGKTTLLEAIYHQIEGIDCSPKVQMAYYRQLAYEDMRDVSLLQYLMDETDSSESFSRA
                     ILNNLGLNEALDRSCNVLSGGERTKLSLAVLFSTKANMLILDEPTNFLDIKTLEALEM
                     FMNKYPGIILFTSHDTRFVKHVSDKKWELTGQSLHDIT"
     gene            7279..>7560
                     /locus_tag="PF788_002196"
     CDS             7279..>7560
                     /locus_tag="PF788_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_064305258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HDG6304444.1"
                     /translation="MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHH
                     STIYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAID"
BASE COUNT         2431 a         1153 c         1089 g         2887 t
ORIGIN      
        1 atttcttgat ttttttcgtc gtcatcagtt aaaaagtcag atgatttaac ggaatatttt
       61 gatgtctctt cgagtgttat aaaatcattt gaattattga ttaaagatat tatattgttt
      121 catgttttta cggcgcatat aaagggcatg tgtttcttca agttcagtta gaattgtttg
      181 cattaaataa gcttgcattg acttgattgt ttccttttgg cctttaactc ccctatcatg
      241 tatagctttt ttaagtcttt ttaaagaagt taatatttca tcctcaatgt cctctaacat
      301 gtaatgcata tcttcatgcc ttgaattaaa tgattttttt gctttaagaa taacagcctt
      361 tatgatttct aaatctctat aatcatattt taataaataa ttagttagtt gttctgggaa
      421 ttcttgcaat agcatttctt tatcatcaaa attatgtgta aattgatttg aatgatttga
      481 atgattacta atttcatttt tgtactttat atcattcaag tcattcatat cattattctc
      541 agtatcatta aagtcaatgt cattaaagtc agtatcatta gtgttcgatt ttcgaacttc
      601 tggacgttcg attttcgaac ttctggacgt tcgattttcg aacttctgga cgttcgattt
      661 tcgaacttcc ttctcgccgt aaggttcaac atcgttttct tctttttcta ttttgtaaat
      721 atcacgttct gtgacaatag gtttcattaa atatagaata tttggtttat ttaaaccacg
      781 tcgtttttga atgagtagac catcgttttc taaccctttt tttatttttg ttaacttttc
      841 ttttttacaa tttaagattt ccattagctt ttcatttgaa taaacaaagt aaatgttacc
      901 atcttcatca acccagctat ttttaataga taaatttaag cgatcacgta agatagcata
      961 ggctattttc atatcattag ttagattttt ataattttca ctggtaaaga atactttagg
     1021 gatttgataa aatctttctt tgtaattttc ttgcactgta aaatattgat tttgcatgac
     1081 aaaaaacctc tttccatatt ttagtttggt aagaggtaat aaaacgtttt tatttagctt
     1141 tacatttatt taatgattta ggtgcttgca ctaagatatt attcattata taatacaagt
     1201 atcgaaaatt atataaataa acagtttcta aacgttttat taccaaaccc cgactattac
     1261 cagtagttgg ggtttttgtt atattaagtt tattatagca ctttaaataa acttataaaa
     1321 gggaaaatat agctttatca agggtttata aacccttgat aaatatcata aacctttcat
     1381 aaacccttga taaaaaggtt gatggatgtt tatttttatt tattaatcac tttattatta
     1441 agcattataa gcttataata ttttatcaag ggtttataaa cattttataa agggttgatg
     1501 atatgaaaag tgtgaaaaag ttgagtgaag aattaggggt tagtaagcaa acgattttta
     1561 ataatattaa gcgattgaat atagagacaa taaaacagga aaacacttcg tttattaaag
     1621 aagataccga tatagaaaaa atcattcaaa gagtaaatga aaataaaaag aaatatggtt
     1681 ttgaaagtac tactgaagac aaacaaaaaa aagggtcgga taatattaat tttgaatcga
     1741 aaagcgatgc tcaaatagta gaaatcctta aaaatcagat tgatacttta aataatcaaa
     1801 ttgaaaaaca agaaagtcgt catgaaacaa caattgaatt ttacagaaaa gagttgcaag
     1861 aaagatcaaa attgcttgaa aatcagcaag ttctggcatt agagagtaat aaaaagattc
     1921 aaaaattaga aaatcaatta gaaaaagaaa aacaccttaa ttatcccttt gatacatcta
     1981 ctaacactag acaaaacgtt gatgcacaag aaaaaacata tactactaat cctgtaaata
     2041 ttaacagaga tcaggaagaa actaaagaaa cagagattca atataaggat atatctggaa
     2101 gtcaaagcga cgaaagtaca caaggtgaag aagcaaaaaa agaagacgtt ccagctaatc
     2161 taaatgacaa tgatagtgat atagaagaaa agagtgaaga aacggaacct aaaaaggggt
     2221 tttggagtcg tttgtttggt agctaaaata attgattagg cactaaaagt tataaaattt
     2281 tagtgtcttt tatatagtga gaacttctgg taatcatcga ttatgtaaac taaagtattt
     2341 caaataatta actgtattaa tactctcatc atgattgcgt tataaacgtt cgttattgag
     2401 acaaaattta atagtactac tacacaaaaa gagagtgcga attcgcactc tctttttgtg
     2461 ataaatgaat ggttaagaaa ataattcatc cacagttgta tcaaacaatc ttgccaactt
     2521 aaatgctaat gtcaatgtag gatcatattt attgttttct attgcattaa tagtttgcct
     2581 agacactttt aattctttac ttaaagtttc ttgagaaatt cctttttgtt ttctatattc
     2641 tctaattcta tttttcatta atttaacctt tagatgtata ttttttattt gtagtatagt
     2701 aattaaacag cataagaaat agtgctacaa ttataaagaa aatttctgga tattgagaaa
     2761 accaagatcc ttcaatactt ggtgacaaac ctgtaaattt aagcactagt gtaaataaca
     2821 tacaatatac aatccaaata aaacttttag ccagtatttc aataaacatt ttacgttgtc
     2881 tttcatcgta tcgatcttgt tgtccttttt tatctaatgt ttctgaaggt aaatatttgt
     2941 tagttatagc cgtccataaa caagaaaaaa ttaaaataat aataaaagga attaaattca
     3001 ttataacacc tcataaatgt aaaaagtatt tgacatttat gagtgtaaat atttttgata
     3061 caaatgtcaa atacttttta cattataata tattttaaaa caccttatta gtaaaacaat
     3121 tactatatag aaagctgcga actcgtactc ttttttcttg tataattatt aaaatctcaa
     3181 ttcaataata tgttatggaa tttgagacac tgtgagagac gctcatttgc attgacaatc
     3241 aatttatcaa gataatccct tatcatgttt aattctataa actgtttgtc ttgtgatatt
     3301 aacttctttc gcaatcttac taatcgcttt gccttcttct aacatttcca ccacgcgatg
     3361 ataaataaca cgtttctgtg ggtctttagc atttggtgaa taaagtaaag ggcgcccttt
     3421 atatacgcct ttttccttcg caacttgaat cccttgcgct tgtcgacgtt tactttcatt
     3481 tctctcttgt tctgaaacca ttgctaatat ttgaatgatt aaatctttca taaacttatc
     3541 cagtaatgga ttgccaatta cttcattcat cataggtaag ctggtaatca ttaactgaac
     3601 gtctttttct tttaaataat tcacagtttc aataatttca tcatagttac gtcctaaacg
     3661 atcaatagat tccacaacga atcgatctcc cattctgaca aaattgagtg cttcttgaaa
     3721 tacaggtcta ttttccactg actttcccga ctgtttctct gtaaagattt tctccacacc
     3781 aaacgtcttt aaattatcca attgtctttc taaattttga tctatcgatg atactctcgc
     3841 ataacctata atcattcatc ttcactccat aataaatata caccctaatc atacgtttta
     3901 attgttataa tttcaacaat tctttttgta tggttagggt gtactcaaag tgtacatatc
     3961 tataattaaa acttactaaa aataaatata gattttttct ttgtaacaga accgttcatt
     4021 tgaaggtcat ctctatcata aatatttaaa ttaactaaaa attttaatca tctgtttaat
     4081 acttatgaaa tgtatttacg gtaggtatta aaattgatga aatttatata agtgctttca
     4141 atgaaaatga ccgtttattt atcctcctga tttaaggagt tagaaatttc gaaaacgatt
     4201 ctttccattt gttgcatttg ttccatgtcc agatatttaa tacattatag aaaaccaaag
     4261 accatcacta attaaacgca gttttaaaat ttcatcagga ttgccttcgt ctttaaaatg
     4321 ggcctctttt aatataagtt ctactctttc atacctaact ctttcaatgc catcgtttca
     4381 tacgccgatt ctcctgattc catagcaaac tcagcgataa acattgggaa tactgcattg
     4441 agttctatta tatgctcttt cattcgtggc catatttcac ctccagcttt accgtatgct
     4501 gttataagtt gctctaatcc ttcgtcgtcg aatacacgat ggtgtcctat aaagtccatt
     4561 gatgggtcgg agtgggttgc ttcagtccag tctatgagac ctgtgacgtt tgcttggtta
     4621 tctaccatta tatgtcctgg atgtaagtcc ccatgtatca tggtcgcatg tcgaggccat
     4681 agttcgtcgt tttctaacca ttgtttccat ctgttccata attcatctga tacgccataa
     4741 gtttctttaa ctttattcat tcttctttga aagtcatttt ttatttcttg tatggttttg
     4801 atatttatat gctgaacgtt aatgttttct tctggtatgt tgtgtaaatc tacgagtgtt
     4861 tcagctaatg tgttaataaa gttttctggt aatggtttgt gttcaatttc ccatacataa
     4921 ttttgtattt ctggatctat tgtggctgcg ggtttacctg taagttttgg gtaagcaata
     4981 aggtcttttg catgtacttt ccacttcggt atttcaaatg aaacattctt ctgtaagaag
     5041 tctaccgttt gtttttcggg ttttgttcgt ttataaacgt caggtcttct tggtagtctc
     5101 aaaacccatt ctactccatg tttatctttt ccaaatgcaa cttgaaaatc aagtcccgat
     5161 tcattcaatg agattgtttg aggttggatg tgtaattgat atttttctgc acatttaata
     5221 atttcattat gtcgagtcat tttattggat ccttatttct attatatttt tcttgtgaac
     5281 gtatttttta tattgatata aatgaaccta atattcaata taaattagtg tatagttttt
     5341 aagttatatc atgaagagat tgtcctgtta attcccattt tttatctgat acatgtttaa
     5401 caaaccttgt atcatgtgat gtaaacaaaa tgattccagg atatttattc ataaacattt
     5461 ctaatgcttc taatgtttta atatctaaaa aattagttgg ttcatccaaa attaacatat
     5521 tcgctttcgt tgaaaataat actgctaacg ataatttcgt tctttcccca ccactcaaaa
     5581 cattacaaga acgatcaagt gcttcattta aacccaagtt atttaaaata gctctactga
     5641 atgattctga tgaatccgtt tcatccatta aatattgcaa taatgaaacg tcacgcatgt
     5701 cttcataagc aagttgacga tagtatgcca tttgcacttt aggagaacaa tcaattccct
     5761 ctatttggtg gtaaatagct tcaagtaaag ttgtcttacc tacaccattt gcacctacga
     5821 gcgctatatt tttgccatat ggtatttgga atcgtacttg tgttagcagt ttttgacttc
     5881 ctttaaccaa tgttagattt tgtgcaatga ttggataatt attatggata tcataaattt
     5941 tattttgtgg gaaattgaat tcatgataac tttgtggttt ttcaacttct tccaaatgtt
     6001 ccattctttt ttcaatatgc ttagcttgtt tttgagcagc cttctcaacc gtgccttttt
     6061 gttttgatgc acttaaacga tctggtgcta tacttttgtt tttttgtttt gatgatgctt
     6121 gtgccatttg ttgcgcttga tttcgtttag ctttactggc ttgggacaat ctttgttttt
     6181 cacttatata ctgttcatat tgacgttgtt gttctaactg ttcttgttca tattgatttt
     6241 gatactgtgt gtaattacct ttaaacactc ttattgtgcc atcttcttgt atatcccaaa
     6301 ttgtgtcagc aatttggtct ataagtgctc tatcatgact tactataatt aaagtaccat
     6361 agtaatattt taaaatattt ttcagataat ctttaccaat tttatccaag tgatttgtag
     6421 gttcatctaa aagtaatatc ggactataat ttgatatgac attagctaat ttatattttg
     6481 ctttttcacc accactcata ctgtcggttg tatgcatagg tatatggagt tcactcatta
     6541 aactaccgtc taacgtgtta aaatcatttt ccacatccat gttaagctgt tcaaaatatt
     6601 gaatttcgcc aaccgtttca actgttccag attctggttt tgttttttga gcaatcatat
     6661 ttagtaatgt ggttttgcca gtaccattac ccccaataag tgctattttt tcaaattggt
     6721 aagcgtaaag atgaccgatg ttaagtgatc gtaaatctgt caatttatga ttgatttggt
     6781 taaatttaat tgtatattgt tccatattta tacactcctt gtatatttaa aggacgtgta
     6841 cgcaaaaaaa tgagacaggc tactcccgtc tcattcacat tacactttca aacacttaaa
     6901 aatttattat gatgttttag tatttgaaag cgtttattat tcctatcgaa ggataaaaaa
     6961 tgacataagt catcctatga gtgtgtattg cggacaagcc tttttgaatt aatttagttt
     7021 tgtattcaaa aaggtttatt tgagtctcat agaagctgtc attttaatcc tccttcatcg
     7081 ataaaatagt aatgttaata taacattttg ttggtttttt tacaatatat ctctaagtag
     7141 aaagattata taacaaaagt ataaaaatac aattttagat tgattataca tctccttaat
     7201 ttagagtgta ctcataaaat acggttctgt tgcaaagttg aatttataat ataattttaa
     7261 caaaaaggag tcttctgtat gaactatttc agatataaac aatttaacaa ggatgttatc
     7321 actgtagccg ttggctacta tctaagatat gcattgagct atcgtgatat atctgaaata
     7381 ttaagagaac gtggtgtaaa cgttcatcat tcaacgatct accgttgggt tcaagaatat
     7441 gccccaattt tatatcaaat ttggaagaaa aagcataaaa aagcttatta caaatggcgt
     7501 attgatgaga cgtatatcaa aataaaagga aaatggagct atttatatcg tgccattgat
//
LOCUS       DAMQWL010000109         7459 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.110, whole genome shotgun sequence.
ACCESSION   DAMQWL010000109 DAMQWL010000000
VERSION     DAMQWL010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7459
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.110"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            194..514
                     /locus_tag="PF788_002197"
     CDS             194..514
                     /locus_tag="PF788_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF771 domain-containing protein"
                     /protein_id="HDG6304445.1"
                     /translation="MPHILNVTVPIPETHVLITKDEYDELIGYSLDPVWNMSDLKKKL
                     KIASDETIKDRLLFHPRFEKELRAQGIVHYPDESFNRWRFNARKMNKFVDEHFNEIYK
                     ERIK"
     gene            511..672
                     /locus_tag="PF788_002198"
     CDS             511..672
                     /locus_tag="PF788_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1270 domain-containing protein"
                     /protein_id="HDG6304446.1"
                     /translation="MSDTYKSYLLAVLCFTVLAIVLMPLLYFTTAWSIAGFASIGTFI
                     YYKEYFYEE"
     gene            767..1027
                     /locus_tag="PF788_002199"
     CDS             767..1027
                     /locus_tag="PF788_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001794769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2482 family protein"
                     /protein_id="HDG6304447.1"
                     /translation="MTKNYKDMTQDELRGLLAEKNAELFDLASEIDEETEFDVLLFSN
                     VGISNGDFTPSSHCVIGNVVDIANLLKRRAVYRDIADVIKMR"
     gene            1067..1327
                     /locus_tag="PF788_002200"
     CDS             1067..1327
                     /locus_tag="PF788_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000291506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1108 family protein"
                     /protein_id="HDG6304448.1"
                     /translation="MYYKTGDVCRKIINVDGFDFQLRVKKRAYSVEMVVLDHEGNSID
                     GLLVSDENDLYTALDILKQSVYEWIENNTDEQDKLMNLVMKW"
     gene            1336..1599
                     /locus_tag="PF788_002201"
     CDS             1336..1599
                     /locus_tag="PF788_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001638663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304449.1"
                     /translation="MRDTERNILNIFKTLFDEYTLSNQRALLEIERNHHGYLSINFLH
                     YHDSYKTNNKLVQIHEINPDSHERIKNLIIEVLRGHRKIKKGA"
     gene            1608..3551
                     /locus_tag="PF788_002202"
     CDS             1608..3551
                     /locus_tag="PF788_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000700558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDG6304450.1"
                     /translation="MKINKLTISNFAGIKEEKFNFDGKDAKIYGNNATGKTTTATALQ
                     WLLFDKGLDGSTKSFNPVPLNEKNEENYELIPTVFAEFEIDGKITTFKKESHPKYTIN
                     QKTNRKEYSRSRTKKQYINDESIKVKDYKARIDELIDEDVFKLITNPQAFNLLDWKKR
                     RSLLFEIAKPINDEDVIKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPI
                     RINQTQQNKQDVPEFDNDRYAIIKQEIEQLENERIDIQNGKEEINLRNQLADKQSELK
                     RIEDNNSASNENKIHALTNELHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKG
                     LKSDLEKAKNQKFEYLDDNVCSCCGQKLPVEQVDMAREKALQKFNASKSKELETIQTS
                     INHIISEGKKIKLIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVTQTDE
                     YKAVMLEINEINQKRSNIRKTIQDKVSGIDDKISELTQEKSEIEVSRSIEKSNKHLDD
                     VISELRNEEDRLLDEKEKYSHDLYILKEFTTTKVKMLTENINNEFEIAEFKLFNTLVN
                     GELEETCSTTVNGVEYDSGLNNASRINVGLDIINTLSKHFKVTAPIFIDNAESVTELI
                     KTESQQIQLIVNEQDKKLRMETI"
     gene            3553..4473
                     /locus_tag="PF788_002203"
     CDS             3553..4473
                     /locus_tag="PF788_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000138475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HDG6304451.1"
                     /translation="MTENNKLQTIEQQLVQEKNVSDNVLNKVRVLESQGNLELPNDYS
                     PSNAMKQAWLQISQDNKLMSCNDTSKANALLDMVTQGLNPAKNQCYFIPYGNKMQLQR
                     SYHGNVMMLKRDAGAQDVVAQVIYKGDTFKQEMGETGRIKAIKHEQDFFNIDKENIIG
                     AYCTIVFNDGRDNYIEVMTIEQIKQAWMQSSMIKDEKALQNSKTHNNFKEEMAKKTVI
                     NRAAKRYINTSTDSNIFKYAQESEQRQRKEVLDAEVEENANQEQLDFEQPVLEEAQYT
                     ELENDKPIDVSDFEEIKEPATEKESEEEPF"
     gene            4554..5171
                     /locus_tag="PF788_002204"
     CDS             4554..5171
                     /locus_tag="PF788_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001169067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDG6304452.1"
                     /translation="MKFERVQKHFKYKTRHIAGCLITHEHGDHAKYTKQFVDNGVISY
                     MTAGTQQAMNFESHRLCTIKAKQELRIGTWSILPFDIEHDANEPVAFLLQSTLGYKVL
                     YVTDTKYLKYKFNGITHMMLEVNYIYEQMQENIKNGSVHSTLANRIMESHFSLEHAIG
                     MLKANDLTRLEEIHLIHLSSQNSNAKYIKSEIQKVTGAPVYFGGL"
     gene            5172..5642
                     /gene="ssb"
                     /locus_tag="PF788_002205"
     CDS             5172..5642
                     /gene="ssb"
                     /locus_tag="PF788_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001837429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDG6304453.1"
                     /translation="MLNRTILVGRLTRDPELRTTQNGVNVASFTLAVNRTFTNAQGER
                     EADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTRNYENKEGQRVYVTEVIADSIQF
                     LEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF"
     gene            5672..6565
                     /locus_tag="PF788_002206"
     CDS             5672..6565
                     /locus_tag="PF788_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HDG6304454.1"
                     /translation="MTGWISIDRSIQNHWLFKEKRTFSKFEAWIYLLMEANHSKAKVP
                     IGNQIVTVERGQRLTSILTLSDLFNWSRFKVKTFLDLLESDGMLEVKTTSKYTLITIV
                     NYDFYQSEQGRNQHQNDIKPTSKQHQSNINPTSKQHQTNTNNNDNKDNNEKNVNNEKK
                     KTTAFDFFQDNGFGFITSYNLDDLNYYLDSFENDSDEIVTASLKIAKDRNKVTWGYAK
                     SILNTWLNANLKSIEQVRAFEKQQLESKKQNYKPFVKQSKEKTPKWLTDSTRETKTPE
                     VDENLEKDREAFIKRLNSKWE"
     gene            6572..6790
                     /locus_tag="PF788_002207"
     CDS             6572..6790
                     /locus_tag="PF788_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000338527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304455.1"
                     /translation="MDAFDKYYLFDHDGNKMFSVTPHFKDGRHLVVGLKHTKFNGRRW
                     YLDDYELKTLIDNEQMELGHQTSLFEYI"
     gene            6799..7203
                     /locus_tag="PF788_002208"
     CDS             6799..7203
                     /locus_tag="PF788_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000401967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDG6304456.1"
                     /translation="MEIEIKFNEVFNAPMGSPRPRFSTKGRYAHTYMPTKYTEHKKYL
                     QNQMPKLNLENALKIELEFYFTPPKSWSKKKKTQAIGQLKVTKPDIDNLMKTVLDACN
                     NYLWKDDNQITEITSSKRYGIEPKIIIRIEEI"
     gene            7216..>7459
                     /locus_tag="PF788_002209"
     CDS             7216..>7459
                     /locus_tag="PF788_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304457.1"
                     /translation="MARKARIVTINDKPYRFTKSEMELIESHGITAGMVSKRVKDGWE
                     LHEAMDAPEGTRLSEYREKKTIERLEQARLERKLERK"
BASE COUNT         3086 a         1130 c         1328 g         1915 t
ORIGIN      
        1 aatgatgtgt agagttttgc tttcagcatc tttcatatgt tcttgtactt taataacttc
       61 accattaatt aaatgtaaat ctaaagaagt aacgatttct ttatctaaat attgagtgag
      121 caatctctta tgcatactta tcacctcctt tcactaggag ataacaacat tatacacgaa
      181 aggaaagata gaaatgccac acattttaaa cgtaacagtt ccaatacctg aaacacatgt
      241 acttatcaca aaagatgaat atgatgagct aattggttat tcattagacc ctgtatggaa
      301 catgagtgac ttaaagaaga aattaaaaat tgcatctgat gagactatca aggacagatt
      361 actatttcat cctagatttg aaaaagaact aagagcgcaa ggaattgtgc attacccaga
      421 tgagagtttt aatcgctgga gatttaacgc aagaaagatg aataaattcg tcgatgagca
      481 tttcaatgaa atatataagg agagaataaa atgagcgaca catataaaag ctacctatta
      541 gcagtgctat gtttcacagt cttagcgatt gtgcttatgc cattgctgta cttcactaca
      601 gcgtggtcaa ttgcaggatt cgcaagcatt ggaacattca tatactacaa agaatacttt
      661 tatgaagaat aaaaaaactg ctacttgcgt caacaagtaa cagtgacaaa cgattaacaa
      721 aattaattca ttttcaatat aaaacgaaac aaggaggaag tcaaccatga ctaaaaatta
      781 taaagatatg actcaagacg aattaagggg tttattggct gaaaagaatg cagaattgtt
      841 tgatttagcg agcgaaatcg atgaagaaac tgaatttgac gttttacttt tttcaaatgt
      901 agggattagc aacggagatt ttacaccgtc gtcacattgt gtgattggga atgttgttga
      961 tattgctaat ttattgaaac gtagagctgt ttaccgagat atcgctgatg ttatcaaaat
     1021 gcgttaaaaa ttctagctat agataatgac aaggaggacg agaacaatgt attacaaaac
     1081 gggtgacgta tgtcgaaaaa taattaatgt agatggcttt gattttcaat taagagttaa
     1141 gaaacgagcg tatagcgtcg aaatggttgt tctagaccat gaaggaaatt caattgacgg
     1201 gttactagtt tctgatgaga acgatctata cacagcttta gatattttga aacaaagtgt
     1261 ttatgaatgg attgaaaata acacagatga acaggacaaa ctaatgaact tagtcatgaa
     1321 atggtaggta taagcatgag agatacagaa agaaatatat tgaatatttt taagacgtta
     1381 ttcgacgaat atactttgtc aaaccaacga gcattattgg aaattgaacg taatcatcac
     1441 ggatacttat cgattaattt cttgcactat cacgacagtt acaaaacaaa caataagctt
     1501 gtgcagatac atgaaatcaa tccagacagc catgaacgaa taaaaaattt aattatcgag
     1561 gtactaagag gtcatcggaa gattaaaaaa ggagcatgag gaaggatatg aaaataaata
     1621 aattaacaat atcgaacttt gccggaatca aagaagaaaa atttaatttt gacggtaaag
     1681 atgcaaaaat atacggcaat aatgcgactg gtaagactac aacagcaacc gcattacaat
     1741 ggttgctttt cgataaaggt ttggacggtt caaccaaatc atttaaccct gtacctttaa
     1801 acgaaaaaaa cgaagaaaat tatgagttaa ttccgactgt tttcgcagaa tttgaaatcg
     1861 acggaaaaat tacgactttt aaaaaagagt cacatcctaa atacacaata aatcaaaaga
     1921 cgaatcgcaa ggaatactca cgaagtcgaa cgaagaaaca atatatcaat gatgaatcaa
     1981 taaaagtaaa ggattataaa gctcgtattg atgaacttat tgatgaagat gtattcaagt
     2041 taattacgaa ccctcaagca tttaacttac tagattggaa gaagcgaaga agtttgttgt
     2101 ttgaaattgc taaaccaatc aatgatgagg atgtcattaa aacaaatgat gattttaaag
     2161 aactaaataa tattcttgga gatcatgaaa ttgaaacaaa gaaaaagatt cttacggaca
     2221 agataaaaca gattaacaaa gatatcaaag atattccgat acgtattaac caaacacaac
     2281 aaaataagca ggatgtacca gaattcgata atgatagata cgcaattatc aaacaagaaa
     2341 ttgagcaact tgaaaatgag cgtatagata ttcaaaacgg taaggaagaa attaatttac
     2401 gtaatcaatt agctgataaa caatcagaat tgaaacgcat agaagacaat aacagcgcaa
     2461 gtaatgagaa caaaatccat gctttaacaa atgaattaca cgttgaaaat ggaacggtag
     2521 caaaccttaa aacgagatta aagcaaaaca aacaacaaat cacgcatgaa gaaaatagac
     2581 gtaatcaatt attagaaaat cataaaggat taaaaagtga tttagaaaaa gctaaaaatc
     2641 aaaaatttga atatcttgat gacaatgtat gtagttgttg tggtcaaaag ttaccagttg
     2701 aacaagtgga tatggcaaga gaaaaagcat tgcagaaatt caatgctagc aaatcgaaag
     2761 aattagaaac aatacaaaca tctatcaatc acattatttc agaaggcaag aaaataaagc
     2821 taatcatcga gaagttagag gatgacaata ataatcttca aattaaaatc aacgaagcag
     2881 aagagcgttc agcaagaata caaaacaaaa ttaataagtt gaaaacaact cacgttgacg
     2941 ttacgcaaac tgacgaatac aaagcagtaa tgttagagat aaatgagatt aatcaaaaac
     3001 gctctaacat caggaaaact attcaagata aagtttcagg aatagatgac aaaataagcg
     3061 aacttactca agaaaaatca gaaattgaag tgtcaagatc aatcgaaaaa tcaaataaac
     3121 atctagatga tgttatttct gaattaagaa atgaagaaga cagattattg gatgaaaaag
     3181 aaaagtattc acatgacctt tatatcttaa aagaatttac aacaacaaaa gtcaaaatgc
     3241 ttactgaaaa catcaataat gaatttgaaa ttgctgaatt taagctattc aataccttag
     3301 ttaacggcga attagaagaa acatgttcca caacggttaa cggcgtcgaa tacgacagcg
     3361 gtttaaataa cgcctcaaga attaatgttg gcttagatat catcaataca ctgtcaaaac
     3421 attttaaagt tacagcgcca atatttattg ataatgctga atcagtaaca gagcttatca
     3481 aaacagaatc acaacaaatt caattgatag taaatgaaca agataaaaaa ttaagaatgg
     3541 agactatata aaatgactga aaataataaa ttacaaacta ttgaacaaca attagtacaa
     3601 gaaaagaacg tatctgacaa cgtattaaac aaagtgagag ttttagagtc acaaggcaat
     3661 ttggaattgc caaatgatta ttcaccaagt aatgccatga aacaagcatg gttacaaatc
     3721 agccaagata acaaattaat gagttgtaac gatacaagca aagcaaatgc cttattagac
     3781 atggtaacgc aaggtttaaa tccagctaaa aatcaatgct actttattcc ttacggcaac
     3841 aaaatgcagt tacaacgtag ctatcacggt aatgtaatga tgttaaaacg tgatgcaggt
     3901 gctcaagatg ttgttgctca agtgatttat aaaggcgata cattcaagca agaaatggga
     3961 gaaacaggac gtatcaaagc gattaaacac gaacaagact tctttaacat cgacaaagaa
     4021 aacattatcg gtgcgtactg cacaatcgta tttaatgatg gacgagataa ctatattgaa
     4081 gtcatgacta ttgaacaaat taaacaagca tggatgcagt catcaatgat taaagatgaa
     4141 aaagcattac aaaattctaa aacacataat aatttcaaag aagaaatggc taaaaaaaca
     4201 gttatcaata gagctgctaa acgttatatc aacacatcaa cagatagcaa tattttcaaa
     4261 tacgcacaag aatccgaaca acgtcaacgc aaagaagtgt tggacgcaga agttgaagaa
     4321 aatgcaaatc aagaacaatt ggactttgaa caaccagttc ttgaagaagc acaatacaca
     4381 gaattagaaa atgataagcc tattgatgta tctgactttg aagaaataaa agaacctgca
     4441 acagaaaaag aaagcgaaga agagccattt taattgaaac aatagcaact ggttcaagtg
     4501 gtaactgcta cgtcttaaat gatggacgta ctacgttact acttgaggca ggtataaaat
     4561 ttgaacgtgt tcaaaagcat ttcaaatata aaacaagaca tatagcaggg tgtcttatca
     4621 cacacgaaca tggtgatcat gcaaagtata caaagcagtt tgtcgacaat ggtgtaatca
     4681 gctatatgac tgctggaaca caacaagcta tgaattttga aagtcatcgc ttatgcacga
     4741 ttaaggcaaa gcaagagctg cgaataggta catggtcaat tctaccgttt gacatcgaac
     4801 atgatgctaa cgagcctgtg gctttcttat tacaaagcac actaggttat aaggttctgt
     4861 atgttactga tacaaagtat ttgaaataca aatttaatgg cattacgcac atgatgctag
     4921 aagttaatta tatctatgaa caaatgcaag aaaacataaa aaacggcagt gtgcacagca
     4981 cattagcaaa cagaattatg gagtctcatt ttagcttaga acatgctatc ggaatgttaa
     5041 aagcaaatga tttaactaga ctcgaagaaa tacatttaat tcatttaagt agtcaaaatt
     5101 caaatgcaaa atacattaaa agtgaaatac aaaaagtgac gggcgcgccc gtttattttg
     5161 gaggtttata aatgctaaac agaacaatat tagttggtcg tttaactaga gacccagaat
     5221 taagaaccac tcaaaatggt gtaaatgtag catcattcac attagcagtt aaccgtacat
     5281 ttacaaatgc acaaggcgag cgcgaggcag actttattaa tatcatcgta tttaaaaaac
     5341 aagcagagaa cgttaataaa tacctatcta aaggatcgtt ggcgggcgta gatggtaggt
     5401 tacaaacgcg gaactatgaa aataaggaag gtcaacgtgt atacgttacg gaagttattg
     5461 ctgatagtat tcaattttta gaaccgaaaa actcaaatga cactcaacaa gatttatatc
     5521 aacaacaagt acaacaaaca cgtggacaat cgcaatattc aaataacaaa ccagtaaaag
     5581 ataatccgtt tgcgaatgca aatggtccga ttgaactaaa tgatgatgat ttaccattct
     5641 aatttaaccg gtttgaaagt gaggtgtgta tatgactggt tggataagta ttgatcgctc
     5701 aattcaaaat cattggctat ttaaagaaaa gagaacattt tcaaagtttg aagcatggat
     5761 atatttactc atggaagcga atcattcaaa ggcaaaagtg cctataggaa accaaattgt
     5821 aaccgttgaa agaggacaaa gattaacatc tattttgacc ttgtctgacc tttttaactg
     5881 gtcacgattt aaagtgaaaa ccttccttga cttactcgag agtgatggaa tgttagaagt
     5941 caaaacaaca tcaaaatata cccttataac cattgtcaat tatgactttt atcaaagtga
     6001 gcagggcagg aaccaacatc aaaacgacat caaaccaaca tcaaaacaac atcagtcaaa
     6061 catcaaccca acatcaaaac aacatcaaac caacacaaac aataatgata ataaagataa
     6121 taatgaaaag aatgtgaata atgagaagaa gaagacaacc gccttcgact tcttccaaga
     6181 taacggattc ggtttcataa cttcttacaa tttagacgat ttaaattatt atcttgattc
     6241 atttgaaaat gattcagatg aaatagttac cgcatcactt aaaatcgcta aagacagaaa
     6301 caaagttact tggggatatg ctaaaagcat tttgaataca tggcttaatg caaacttgaa
     6361 atctattgaa caagtacgtg catttgaaaa gcaacaactt gaaagcaaaa aacaaaatta
     6421 taaacctttc gttaaacaat caaaagaaaa aacacccaaa tggctcacag acagcacgag
     6481 agaaacgaaa acgccggaag tagatgaaaa ccttgagaaa gacagagaag cttttattaa
     6541 gcgtctaaat agcaaatggg agtgattgaa aatggatgca tttgataaat actatctatt
     6601 tgatcatgac ggcaacaaaa tgttttcagt tacaccacat tttaaagatg gacggcattt
     6661 agttgttgga ttaaaacaca caaaattcaa tggtcgacgt tggtacttag atgattatga
     6721 attaaaaaca cttattgata atgaacaaat ggagttagga caccaaacaa gcttatttga
     6781 atatatatga gggattacat ggagatagaa attaaattta atgaagtgtt taatgcgccg
     6841 atgggctcgc ctcgaccgcg ttttagcaca aaaggtagat atgcacacac atatatgcct
     6901 acaaaatata cagaacataa aaaatattta caaaatcaaa tgccaaagct aaatctagaa
     6961 aatgcattaa aaattgaatt agagttttac tttactccac ctaaatcatg gtcgaagaaa
     7021 aagaaaactc aagcgattgg acaattaaaa gtaactaaac cagatatcga taatttgatg
     7081 aagacagttc tagacgcttg taacaattat ttgtggaaag acgataacca aattacagaa
     7141 ataactagct caaagcgtta tggaattgag cccaaaataa tcatacgaat agaagaaata
     7201 taagaggtgg ataaaatggc gagaaaagca aggattgtaa caataaatga taaaccatat
     7261 aggtttacca aatctgaaat ggaattaata gaaagtcacg gtataaccgc tggaatggtt
     7321 tctaagagag taaaagacgg ttgggaacta catgaagcaa tggacgcacc agaaggtacg
     7381 cgtttaagcg agtacagaga aaagaaaaca atagaaagac tggaacaagc tagactcgaa
     7441 cgcaaattgg aaagaaagc
//
LOCUS       DAMQWL010000110         7395 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.111, whole genome shotgun sequence.
ACCESSION   DAMQWL010000110 DAMQWL010000000
VERSION     DAMQWL010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7395
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.111"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..778)
                     /locus_tag="PF788_002210"
     CDS             complement(<1..778)
                     /locus_tag="PF788_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HDG6304458.1"
                     /translation="MEKIKIIVASDSIGETAELVARAGISQFNPKQCKNELLRYPYIE
                     SFEDVDEVIQVAKDTNAIIVYTLIKPEMKQYMSEKVAEFQLKSVDIMGPLMDLLSASV
                     EEKPYNEPGIVHRLDDAYFKKIDAIEFAVKYDDGKDPKGLPKADIVLLGISRTSKTPL
                     SQYLAHKSYKVMNVPIVPEVTPPDGLYDINPKKCIALKISEEKLNRIRKERLKQLGLG
                     DTARYATEARIQEELNYFEEIVSEIGCPVIDVSQKAIEETA"
     gene            complement(789..1412)
                     /locus_tag="PF788_002211"
     CDS             complement(789..1412)
                     /locus_tag="PF788_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001797828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304459.1"
                     /translation="MELSQRQERIIEIVKTKGPITGEQIADKLNLTRATLRPDLAILT
                     MSGFLEARPRVGYYYSGKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFL
                     EDVSTLFIINEDNDFVGVCSRKDLLRASMIGADIHKVPISVNMTRMPNVTYLEESELV
                     IYAADRMIEKEIDSIPIVRKKDNQKYEVIGRISKTTIAKLLVALYKE"
     gene            1747..3138
                     /locus_tag="PF788_002212"
     CDS             1747..3138
                     /locus_tag="PF788_002212"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HDG6304460.1"
                     /translation="MAKDMDTIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNN
                     VKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKL
                     IEDYMQDVKGDENFIADGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQG
                     VTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRT
                     REFEQMELEFFCKPGEEIEWQNYWKTFASDWLTSLNMSSENMRLRDHDEDELSHYSNA
                     TTDIEYKFPFGWGELWGIASRTDFDLRKHAEHSGEDFRYHDPETNEKYIPYCIEPSLG
                     ADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAIKIFEQ
                     LSSKFSIDFDESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPI
                     SELEAFLTEKTKF"
     gene            complement(3288..4034)
                     /gene="recO"
                     /locus_tag="PF788_002213"
     CDS             complement(3288..4034)
                     /gene="recO"
                     /locus_tag="PF788_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDG6304461.1"
                     /translation="MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGL
                     QAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDE
                     GDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQAD
                     LIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEM
                     SDIILMLYREYAGMFFKSQKLINQLKRLEQ"
     gene            complement(4062..4961)
                     /gene="era"
                     /locus_tag="PF788_002214"
     CDS             complement(4062..4961)
                     /gene="era"
                     /locus_tag="PF788_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000134760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDG6304462.1"
                     /translation="MTEHKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNK
                     IQGVMTRDDAQIIFIDTPGIHKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRG
                     DEYIIEMLKNVKTPVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVD
                     HFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRM
                     VKESEDRVHIEATIYVERDSQKGIVIGKGGKKLKEVGKRARRDIEMLLGSKVYLELWV
                     KVQRDWRNKVNFIRQIGYVEDQD"
     gene            complement(4962..5366)
                     /gene="cdd"
                     /locus_tag="PF788_002215"
     CDS             complement(4962..5366)
                     /gene="cdd"
                     /locus_tag="PF788_002215"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDG6304463.1"
                     /translation="MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNV
                     ENASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDD
                     DMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE"
     gene            complement(5377..5721)
                     /locus_tag="PF788_002216"
     CDS             complement(5377..5721)
                     /locus_tag="PF788_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDG6304464.1"
                     /translation="MKRFKYALDGLKILIQKDYKFLLHVFAMIVAIVFGLVLNINRIE
                     WIFILIAIALVLTVEALNTAIEYVVDLVTVEYHDLAKYAKDIAAFSVLIVSILAFIIG
                     LIVFLPHFIALF"
     gene            complement(5724..6191)
                     /gene="ybeY"
                     /locus_tag="PF788_002217"
     CDS             complement(5724..6191)
                     /gene="ybeY"
                     /locus_tag="PF788_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDG6304465.1"
                     /translation="MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTF
                     VDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQ
                     ANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD"
     gene            complement(6192..7139)
                     /locus_tag="PF788_002218"
     CDS             complement(6192..7139)
                     /locus_tag="PF788_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDG6304466.1"
                     /translation="MPGIIQIDDMNQSQALIGNNDEHLKAIEESFDVVIHARGQEVAV
                     KGTKIENVEKAESVLINLLKVIDLGNNITIKDVEAAIKMAHNNTIQHLLDLYDEEITK
                     DAFGKTIRAKTMGQRIYVNAMKNNDLVFGIGPAGTGKTFLAVVYAAKQLRKGAVKRIV
                     LTRPAVEAGESLGFLPGDLKEKVDPYLRPLYDGLYTVLGREQTERFIERGIIEIAPLA
                     YMRGRTLEDAFVILDEAQNTTHAQMKMFLTRLGFGSKMVVTGDQTQIDLPKGVKSGLK
                     EAVSRLHNVKGISILKLDQSDVVRHPLVSKIIEHYEGEN"
BASE COUNT         2332 a         1379 c         1042 g         2642 t
ORIGIN      
        1 ttgctgtttc ttcgattgct ttttgagaaa catcaatgac aggacatcca atttcactta
       61 cgatttcttc aaagtaattc aattcttctt gaattcgtgc ttctgttgca tatcgagctg
      121 tgtcacctag tcctaattgt tttagtcgct cttttctaat gcgatttaat ttttcttcac
      181 ttattttaag tgcgatacat ttctttggat taatatcata taagccatct ggcggtgtca
      241 cttctggtac aatcggtaca ttcataactt tgtaactctt atgcgctaaa tactgagata
      301 atggtgtctt tgaagttctc gaaataccaa gtaaaacaat atcagcttta ggtaatcctt
      361 taggatcttt accatcatca tatttaactg caaactctat cgcatcaatt ttcttgaaat
      421 atgcatcatc taatctatga acgatacctg gctcattata aggtttttct tcaaccgaag
      481 cagataataa atccattaat ggccccatga tatcgacaga cttcaattgg aattctgcta
      541 ctttctcact catatattgc ttcatttcag gtttaataag tgtataaaca atgatagcat
      601 ttgtatcttt tgcaacttga atcacttcat caacatcttc aaaagattca atatatggat
      661 atcttaataa ttcattttta cattgcttag gattgaattg tgaaatacct gccctagcaa
      721 ctaactctgc cgtttcacct atagaatctg aagctacgat aattttaatt ttttccatta
      781 cttctcacct attctttata taatgctact aataacttag ctattgttgt tttggaaatt
      841 cttccaatta cttcatactt ttgattatct ttttttctta caattggaat cgaatcaatt
      901 tctttttcaa tcattctatc tgctgcgtat atgactaatt cgctttcctc taaataagtg
      961 acattaggca tacgtgtcat atttacactg ataggtactt tatgaatatc tgctccaatc
     1021 attgaagctc ttaataaatc ttttcttgaa cacacaccaa caaaatcgtt atcttcatta
     1081 ataataaata atgtacttac atcttctaaa aaaattgtac aaatagcgtc ataaactgtt
     1141 gtattctctc ttagcacaac aggttgagac atatagtcct taacctcaaa ttgtcgaagt
     1201 ttttcattaa aaaatttgcc ttttgattta cctgaataat aatatccaac tcggggacgc
     1261 gcttctaaaa aacctgacat tgttaatatc gctaaatctg gtctaagcgt tgctcttgtt
     1321 aaattcaact tatctgctat ttgttcacca gtaatgggtc ctttagtttt aacaatttcg
     1381 atgattcgtt cttgtctttg actgagttct ataggtcttc accccttttt tattcaccta
     1441 ttattatacc gatatttctt tcatgtcaca aacacattaa ttttacttgc ctttaaataa
     1501 tctatcaatt agaataaacg tacagcgagt taaggatagt gtaagcttaa caataagatt
     1561 ggcgcaacga atcattttaa aataaaagcg agtgactaca ctaatttggg tggaaccgcg
     1621 ggttaaatac gtaacttatt ttgtattata tacaatttaa aatattaact cgtcccatgg
     1681 aagtaaagca tatttactat gctgttattt tccatggggc gttttcatgt atgaggagag
     1741 gtaattatgg caaaagatat ggatacaatt gtttcattag caaaacacag aggttttgtg
     1801 ttccctggta gtgatattta cggtggttta tcaaacacat gggattatgg tcctttaggt
     1861 gttgaattaa agaataatgt taaaaaagct tggtggcaaa aattcattac acaatcaccg
     1921 tttaacgttg gtatcgatgc tgcaatctta atgaatccaa aagtatggga agcttcagga
     1981 cacttaaaca acttcaacga cccaatgatt gataataaag atagtaaaat tcgatatcgc
     2041 gctgataaat taattgaaga ttatatgcaa gatgttaaag gtgatgaaaa cttcattgcc
     2101 gatggtttaa gttttgaaca aatgaaaaaa attattgacg atgaaggtat tgtttgtcct
     2161 gtaagtaaaa ctgctaactg gactgaaatt cgccaattca atttaatgtt taaaacattc
     2221 caaggtgtaa ctgaagattc tacaaatgaa attttcttac gtcctgaaac agcacaaggt
     2281 atttttgtaa actataaaaa cgtgcaacgt tcaatgcgta aaaaattacc atttggtatc
     2341 ggtcaaattg gtaaatcatt ccgtaatgaa atcactccag gtaacttcat tttcagaaca
     2401 agagaatttg aacaaatgga acttgaattc ttctgtaaac ctggagaaga aatcgaatgg
     2461 caaaattatt ggaaaacttt tgcaagtgac tggttaacaa gcttaaatat gagcagtgaa
     2521 aatatgcgtt tacgtgatca tgatgaagat gaattatctc attactcaaa tgcaacaact
     2581 gatattgaat ataaattccc atttggttgg ggtgagttat ggggtatcgc aagtcgtaca
     2641 gacttcgact tacgtaaaca tgctgaacac tctggtgaag atttcagata ccatgatcca
     2701 gaaacgaacg aaaaatatat tccatattgt atcgagccat cacttggtgc agatcgtgta
     2761 acattagctt tcttatgtga tgcatatgat gaagaaggcg ttgaaggtag taaagatgca
     2821 cgtacagttt tacacttcca tcctgcatta gcaccatata aagcagcgat tttaccttta
     2881 agtaagaaat tatctggcga agcgattaag atttttgagc aattaagttc taaattctca
     2941 atcgatttcg atgaatcaca atctatcggt aaaagatacc gtcgtcaaga tgaaatcggt
     3001 acaccttatt gtgtaacatt cgactttgat tcattagaag ataatcaagt tacagtacgt
     3061 gacagagatt caatggaaca agttcgtatg ccaatctcag agttagaagc tttcttaact
     3121 gaaaaaacaa aattctaatt aaaaagactt tccaccatat gtggtggcta tataatttat
     3181 aaaaagagat actggttagt aaaattgcca gtatctcttt tctattcaaa aaggtattca
     3241 aataaacaca tctatgtggc tacttgaata ccttttatta ttttatgtta ttgttccaat
     3301 ctttttaatt ggttgattag tttctgactt ttaaaaaaca tacctgcata ttcacgatat
     3361 aacattaaaa tgatatctga catttcatca ataatttctt gatggatatt caatgaattc
     3421 attttatcta tcggtaattt ttgtaataca tctaataaat atagtgtttt attcgataat
     3481 ataactgcat gtacatcttt agaagcctct tgccttgaaa tcgcaccgtc aaacttaaaa
     3541 ctataaccta ttaaatctgc ttgtgtgtca ttaccactca cagcacagcg attaaatgat
     3601 gcagtaaaac caaatcgttt catgcacttt aacataacta cgactgacat taactgtgca
     3661 gatgtacctg attctatttt ttcaagaaca aattgtaata attgatagtt atatggtgca
     3721 atgtcacctt catccattga gcgctcaata gtttcagctg ccagagcggc ataactgctt
     3781 acgtaaaggt ccatttgtaa tttataatgt tgactaataa catctacaga atttaacgtt
     3841 cccatacctc gccactgatt gtaaataaac aaaccataaa caaacaattg cgtttgcgct
     3901 tgtaaacccg tcttaacttt tttagcacgc cttgccataa gtggtacttt tgcaccatgc
     3961 tcatttaaaa tcgtgataat tttatcagat tcaccataat caactgcttt gatgataatc
     4021 cctttttggc gcattaacaa ttatcttcac cacttttaag attaatcttg gtcttcaaca
     4081 taaccaattt ggcgaataaa gttaactttg tttcgccagt ctctttgaac tttgacccat
     4141 aattctaagt aaactttaga gcctagaagc atttctatat cacgtctcgc acgttttcct
     4201 acttctttta actttttacc gccttttcca atgacaattc ctttttgcga atctctttca
     4261 acatatatag ttgcttcgat atgaacacga tcttcgcttt ctttaaccat acggtccaca
     4321 ttaacaccaa tcgcatgagg gatttcttca cttgtaagat gaaggatttt ttcacgaatg
     4381 atttcaccca ctacaaattg ttcaggatgg tctgaaattt gatcatctgg ataatattta
     4441 ggtccttcgg gtaaatacgt ctttaaaaca tcaataaaat gatcgacatt tagcccttct
     4501 aatgctgaaa taggtacaat ctctgtaaag tccatataac tttgatattc ttcaatcttt
     4561 ggcattaatt catctggatg cactaaatct attttattta atactaaaaa tactggtgtc
     4621 ttaacatttt tcaacatttc tataatatat tcatcgcctc gtccaatttc ctcattggca
     4681 ttaaccataa acatgattgc atctatctca gataatgtat ttttagcgac tttcatcata
     4741 tagtcaccta atttgtgttt aggtttatga atacctggcg tatcaatgaa tataatttgc
     4801 gcgtcatctc ttgtcataac accttgaatt ttatttctag ttgtttgagc tttatcggac
     4861 atgattgcta ttttatggcc gatcactcta ttaacaaatg ttgactttcc tacatttggt
     4921 ctacctataa ttgaaacaaa tcctgattta tgttctgtca tttattctaa atcctttcct
     4981 gaaaatccaa atggtagtaa ctctgcgact gtcatcataa ccatatctcc tttatgattt
     5041 gtcatataca caggcatatc atcatcacat aattccttca aaacttgacg acatgcacca
     5101 caaggtgatg acggtttatc tgcatctacg gttacagtta ttgattcaaa atcacctggt
     5161 ctgtatcctt gagaaattgc cgataccaaa ctagctcgtt cagcacatat cgataatgga
     5221 taagaagcat tttctacatt ggtaccataa aaagttctac cgtctttcgt ttttaaataa
     5281 gcccctactt taaattgact gtatggcgaa tatgattctt gttgtgcttt tctaacttct
     5341 tgaaaataat gaggttgata actcatatat gcctccctaa aataacgcta taaaatgtgg
     5401 taaaaatact attaaaccta taataaatgc taatattgaa actataagta cactaaaagc
     5461 cgcaatatct ttagcgtatt tagctaaatc atgatattca acggtcacta aatcgacaac
     5521 atattcaata gcagtgttta aagcttcaac agtgagaact aatgcaatag caatgagtat
     5581 aaatatccac tcaatccgat taatatttag tacgagacca aagacaatag caacaatcat
     5641 tgcaaacaca tgtaaaagaa atttatagtc tttttgaatt aagattttca gcccatcaag
     5701 tgcatattta aaccttttca taattagtct cgtgttaatc catatgcgtt taatattgta
     5761 tcttgtcgac caaacatttc cttttcatcc gcttcagtca tatgatcata acctaataga
     5821 tgcaaaaatc catgtaatgc taaaaatcct aattctcgtt caaaagaatg tccgtaattg
     5881 tttgcttgtt cttgcgctac atccgtacag ataattatat cccctaaaac acgtggtata
     5941 tcaagaccac taaaatcaat ctctggctca tcttcttcta aagcaaatga gattacatct
     6001 gtaactttat ctttatctct atatgttcga ttaatttctt gtatttcttg tttatctaca
     6061 aatgtaacag aaagctcagc atcgtcttct atatgctctt cttttttagc aaattctaat
     6121 aaatcttcaa tttgtttata ccaagcatct ttaactaagc ctgtgtgatc gctaaaatct
     6181 atcgtaaaca tttaattctc tccttcataa tgttcaatga tcttacttac caatggatgt
     6241 ctgactacat cgctctgatc taatttcaat atacttatac ctttaacgtt gtgtaaccta
     6301 ctgaccgctt ccttaagtcc acttttaaca cctttaggta aatcgatttg agtttggtca
     6361 ccagtaacta ccatttttga gccaaaacct agtcttgtta aaaacatttt catttgcgca
     6421 tgtgtcgtat tctgcgcctc atcaagaatt acaaatgcat cttctaatgt tcgtccgcgc
     6481 atatatgcaa gtggcgctat ttcgataatg cctctttcaa taaatcgctc tgtttgttca
     6541 cgcccaagaa cagtatatag accatcatat aaaggtctta aatatggatc taccttttct
     6601 ttcaaatctc ctggtaaaaa tccaagtgac tctcctgctt caacagcagg tcttgttaat
     6661 acaatacgtt taacagcacc tttacggagt tgctttgctg cataaactac agctaagaat
     6721 gtcttacctg taccagcagg acctatacca aatactaaat cattattttt catggcatta
     6781 acatatatac gttgccccat cgttttcgca cgaatcgtct taccaaatgc atctttagtt
     6841 atctcttcat catataaatc taacagatgt tgaattgtgt tattatgcgc cattttaata
     6901 gctgcttcaa catctttaat tgtaatatta ttacctaaat caataacctt cagcaaattg
     6961 attaatactg attccgcttt ttctacgttt tctatttttg tacctttaac ggcaacttct
     7021 tgtcctcttg catggatgac aacatcgaaa ctctcttcaa ttgcttttaa atgttcatca
     7081 ttatttccaa ttaaagcttg agattggttc atatcgtcta tttgtataat tccaggcata
     7141 cacgcgctcc ttttcatata tcatttatat tcattctatg atgctttaat atctacttaa
     7201 ttatatcatg caattgattg atttaaacat ctttgcattg acttactcat ttttctttaa
     7261 tttaaaataa tcatttatac ttttcacctt gtcataaaag cagattcaat tttagactaa
     7321 tcaatttttt gctgtaattt aaataactaa tatttctcga aaaattctct ttgtttttta
     7381 atttttctta acgta
//
LOCUS       DAMQWL010000111         7286 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.112, whole genome shotgun sequence.
ACCESSION   DAMQWL010000111 DAMQWL010000000
VERSION     DAMQWL010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7286
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.112"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..927
                     /locus_tag="PF788_002219"
     CDS             <1..927
                     /locus_tag="PF788_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDG6304467.1"
                     /translation="KQYLITDFRYIDQATKQAPNYEIINRKSTIIGEIKELLHQENFE
                     NVGFEGHHVSYDTYLELNKSRISLISISNTVDKIRDVKDADEIALIQKAANIVDETYE
                     YILTVVKAGMTEKELKAILESKMLELGADGPSFDTIVASGHRGALPHGVASDKIIEKG
                     DMITLDFGAYYNGYCSDITRTFAIGEPDPKLKEIYQIVLESQMKAINEIRPGMTGAEA
                     DAISRNYLESKGYGKEFGHSLGHGIGLEIHEGPMLARTIQDKLQVNNCVTVEPGVYIE
                     GLGGIRIEDDILITENGCQVFTKCTKDLIVLT"
     gene            953..1510
                     /gene="efp"
                     /locus_tag="PF788_002220"
     CDS             953..1510
                     /gene="efp"
                     /locus_tag="PF788_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDG6304468.1"
                     /translation="MISVNDFKTGLTISVDNAIWKVIDFQHVKPGKGSAFVRSKLRNL
                     RTGAIQEKTFRAGEKVEPAMIENRRMQYLYADGDNHVFMDNESFEQTELSSDYLKEEL
                     NYLKEGMEVQIQTYEGETIGVELPKTVELTVTETEPGIKGDTATGATKSATVETGYTL
                     NVPLFVNEGDVLIINTGDGSYISRG"
     gene            1984..2448
                     /gene="accB"
                     /locus_tag="PF788_002221"
     CDS             1984..2448
                     /gene="accB"
                     /locus_tag="PF788_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDG6304469.1"
                     /translation="MNFKEIKELIEILDKSTLTEINIEDTKGKVTLKKEKETEIITPQ
                     ISQMPVEAAAMPMPQAQSTDSNKTEAPKPTSDNHKTINAPMVGTFYKSPSPDEEAYVQ
                     VGDTVSNETTVCILEAMKLFNEIQAEISGEIVEILVEDGQMVEYGQPLFKVK"
     gene            2448..3803
                     /gene="accC"
                     /locus_tag="PF788_002222"
     CDS             2448..3803
                     /gene="accC"
                     /locus_tag="PF788_002222"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDG6304470.1"
                     /translation="MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIA
                     DEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFI
                     GPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATA
                     GGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYG
                     NVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFI
                     YDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHA
                     IEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNYTIPPYYDSMVAKLIIH
                     EPTRDEAIMAGIRALSEFVVLGIDTTIPFHIKLLNNDIFRSGKFNTNFLEQNSIMNDE
                     G"
     gene            3818..4180
                     /locus_tag="PF788_002223"
     CDS             3818..4180
                     /locus_tag="PF788_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HDG6304471.1"
                     /translation="MVKVTDYSNSKLGKVEIAPEVLSVIASIATSEVEGITGHFAELK
                     ETNLEKVSRKNLSRDLKIESKEDGIYIDVYCALKHGVNISKTANKIQTSIFNSISNMT
                     AIEPKQINIHITQIVIEK"
     gene            4240..4629
                     /gene="nusB"
                     /locus_tag="PF788_002224"
     CDS             4240..4629
                     /gene="nusB"
                     /locus_tag="PF788_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDG6304472.1"
                     /translation="MSRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDLDFEF
                     IHWLVSGVKGHEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMN
                     EAVELTKQFSDDDHYKFINGVLSNIKK"
     gene            4646..5983
                     /locus_tag="PF788_002225"
     CDS             4646..5983
                     /locus_tag="PF788_002225"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDG6304473.1"
                     /translation="MSDYLSVSALTKYIKYKFDQDPHLQSVLIKGELSNFKKHSSGHL
                     YFNVKDKESVISAMMFKGSASKLNFEPKEGDEVLLEARVSVFERRGNYQIYVNKMQLD
                     GIGNLYQKLEALKKKLTEEGCFDKANKKSIPKFPKKIAVLTASTGAAIRDIHSTINSR
                     FPLAEQIQISTLVQGEKAKDDIIEKIEYADSLGVDTIIVGRGGGSIEDLWNFNEEAVV
                     RAIYNCKTPIISAVGHETDFTLSDFAADIRAATPTQAAVIATPDQYELLQQIQQYQFT
                     LTRFIKKHLEQQRKHVEHLSSYYKFKQPTLLYDQQIQRRDDLEKRLKQQIQATFEQQR
                     HRLMLLQQRYNLKALLSSVNQEQQNNLQLTNQLVKLLNSKILSYKNDLKNKVENLNNL
                     SPTNTMLRGYAIVNKKDEVITSTKDLTENDQLTLTMKDGLVDAKVTKVRCNND"
     gene            5976..6206
                     /locus_tag="PF788_002226"
     CDS             5976..6206
                     /locus_tag="PF788_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDG6304474.1"
                     /translation="MTKETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSA
                     ACDTTLKNAEKKVNDLIKEEAEDVKNDESTDE"
     gene            6184..7065
                     /locus_tag="PF788_002227"
     CDS             6184..7065
                     /locus_tag="PF788_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDG6304475.1"
                     /translation="MTNLPMNKLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKR
                     IRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKV
                     YGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQS
                     EGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKD
                     DLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQF
                     NTKHLLEIVDLFYSRDH"
BASE COUNT         2782 a          988 c         1371 g         2145 t
ORIGIN      
        1 aaacaatatt tgataacaga ctttagatat attgatcaag caactaagca ggcgccaaat
       61 tatgaaatta ttaatcgtaa atctactatt attggtgaga ttaaagaatt gctacaccaa
      121 gaaaattttg aaaatgtagg ttttgagggg catcatgtaa gttatgatac ataccttgaa
      181 ttaaataaaa gccgtatatc attaataagc atttctaata ctgtagataa aattagagac
      241 gtcaaagatg ctgacgaaat tgctttaatt caaaaagcag ctaatattgt tgatgaaaca
      301 tatgaatata ttttaactgt tgtaaaagca ggcatgactg aaaaagaatt aaaggcaata
      361 ttagaaagca aaatgctaga attaggagca gatggaccat cattcgatac gattgtagca
      421 tctggtcata gaggtgcatt accacatggt gttgcaagtg ataaaattat tgaaaaaggc
      481 gacatgatta cattagattt tggcgcgtat tataacggct attgttcaga tattactaga
      541 acatttgcta ttggagaacc agatcctaaa ctgaaagaaa tatatcaaat agtacttgaa
      601 tctcaaatga aagcaattaa tgagattaga cctggcatga ctggtgcaga agctgatgcc
      661 atttcaagaa actatttaga gtcaaaaggg tatggaaaag aatttggaca ttcactagga
      721 catggtattg gtttagaaat ccatgaaggg ccaatgctgg ctcgtacgat acaagataaa
      781 cttcaagtta acaactgtgt tacagtagaa cctggtgttt atatagaagg tttgggcggt
      841 ataagaatag aagatgatat tttaattaca gaaaatggtt gtcaagtctt tactaaatgc
      901 acaaaagacc ttatagtttt aacataagcg tgtaaaatga ggaggaaact gaatgatttc
      961 ggttaatgat tttaaaacag gtttaacaat ttctgttgat aacgctattt ggaaagttat
     1021 agacttccaa catgtaaagc ctggtaaagg ttcagcattc gttcgttcaa aattacgtaa
     1081 tttaagaact ggtgcaattc aagagaaaac gtttagagct ggtgaaaaag ttgaaccagc
     1141 aatgattgaa aatcgtcgca tgcaatattt atatgctgac ggagataatc atgtatttat
     1201 ggataatgaa agctttgaac aaacagaact ttcaagtgat tacttaaaag aagaattgaa
     1261 ttacttaaaa gaaggtatgg aagtacaaat tcaaacatac gaaggtgaaa ctatcggtgt
     1321 tgaattacct aaaactgttg aattaacagt aactgaaaca gaacctggta ttaaaggtga
     1381 tactgcaact ggtgccacta aatcggcaac tgttgaaact ggttatacat taaatgtacc
     1441 tttatttgta aacgaaggtg acgttttaat tatcaacact ggtgatggaa gctacatttc
     1501 aagaggataa tctctaattt gttaacaaat agcttgtatt cactatactg atttaacgta
     1561 agatattcta aataagtctc ataaagctat tgcctaaaat gattataggt tatatgctga
     1621 tatgaggctt tttattttta aaataatttt taaaatataa aacgaatcgt ctaattggta
     1681 gtgaaaaaac atagacatga gtagaggtat atatctacat atcatattgt tgaggataaa
     1741 acataatagc taataaaaat aacattgata tgtttaactg aatgcataaa atttttaatc
     1801 aagagttaag atgagtcaat gttaagtaat aaatacacaa gtgtttttaa tttaaaatgt
     1861 ggttttatta taactttggg atagacttat aatgtcgcca gcaatatgaa catgcttgaa
     1921 ttgaagagtt gtctcaagta aaatagacgg gtagatgaaa acaaactgaa ggagtcagta
     1981 ataatgaact ttaaagaaat caaagaatta attgaaattc tggataaatc aactttaacg
     2041 gaaatcaata ttgaagatac taaaggcaaa gtgacgctta agaaagaaaa agaaactgag
     2101 attatcacgc cacaaatctc acaaatgcca gttgaagctg cggcaatgcc tatgcctcaa
     2161 gcacaatcaa ctgatagcaa taaaactgaa gctccaaagc caacttcaga taatcacaaa
     2221 acaattaatg cacctatggt aggtacattt tacaaatcgc catctccaga cgaagaagca
     2281 tatgtgcaag ttggggacac tgtttcaaat gaaacaacag tgtgtatttt agaggcaatg
     2341 aaactattta atgaaattca agcagaaatt tcaggtgaaa ttgttgaaat cttagtagaa
     2401 gacggacaaa tggtagagta tggccaaccg ttatttaagg tgaaataatg aaaaaggttt
     2461 taattgcaaa ccgcggtgaa atcgcagtta ggattattcg cgcttgtcgt gatttaggca
     2521 tccaaactgt tgcaatctat tctgaagggg ataaagatgc gctacatact caaattgctg
     2581 atgaagcata ttgcgtaggt cccactttgt ctaaagattc atatttaaat attccgaaca
     2641 tcttatctat tgcaacttct acaggttgtg atggcgttca tccgggttat ggctttttag
     2701 ctgaaaatgc tgattttgca gaattatgcg aagcatgcca attgaagttc attggaccaa
     2761 gttatcaatc tatccaaaaa atgggtatca aagatgttgc taaggcagaa atgatcaaag
     2821 ccaatgttcc agttgttcct ggtagtgacg gtttaatgaa agacgtctca gaagctaaga
     2881 aaatcgccaa aaaaattggc tatccggtca tcattaaagc tactgctggc ggtggcggaa
     2941 aaggtatccg tgttgctcgt gatgaaaaag aacttgaaac tggcttccga atgacagaac
     3001 aagaagctca aactgcattt ggtaatggtg gactttatat ggagaaattc atcgaaaact
     3061 tccgccatat tgaaatccaa attgttgggg acagctatgg taatgtaatt catttaggag
     3121 aacgtgattg tacaattcaa agacgtatgc agaaattagt ggaagaagca ccttccccaa
     3181 ttttagatga tgaaacacgt cgtgaaatgg gaaatgccgc agttcgtgca gcgaaagctg
     3241 taaattatga aaatgcggga acaattgagt ttatatatga tttaaatgat aataaatttt
     3301 attttatgga aatgaataca cgtattcaag tagaacatcc tgtaactgaa atggtaacag
     3361 gaattgattt agttaaatta caattacaag ttgctatggg tgacgtgtta ccgtataaac
     3421 aagaagatat taaattaaca ggacacgcaa ttgaatttag aattaatgct gaaaatcctt
     3481 acaagaactt tatgccatca ccaggtaaaa ttgagcaata tcttgcacca ggtggatatg
     3541 gtgttcgaat agagtcagca tgttatacta attatacgat accgccatat tatgattcga
     3601 tggtagcgaa attaatcata catgaaccga cacgagatga agcgattatg gctggcattc
     3661 gtgcactaag tgaatttgtg gttcttggta ttgatacaac tattccattc catattaaat
     3721 tattgaataa cgatatattt agaagcggta aatttaatac aaacttttta gagcaaaata
     3781 gcattatgaa tgatgaaggt taataggagg tcaatccatg gtcaaagtaa ctgattattc
     3841 aaattcaaaa ttaggtaaag tagaaatagc gccagaagtg ctatctgtta ttgcaagtat
     3901 agctacttcg gaagtcgaag gcatcactgg ccattttgct gaattaaaag aaacaaattt
     3961 agaaaaagtt agtcgtaaaa atttaagccg tgatttaaaa atcgagagta aagaagatgg
     4021 catatatata gatgtatatt gtgcattaaa acatggtgtt aatatttcaa aaactgcaaa
     4081 caaaattcaa acgtcaattt ttaattcaat ttctaatatg acagcgatag aacctaagca
     4141 aattaatatt cacattacac aaatcgttat tgaaaagtaa tgtcatacct aattcagtaa
     4201 ttaaataaag aaaaatacaa acgtttgaag gagttaaaaa tgagtcgtaa agaatcccga
     4261 gtgcaagctt ttcaaacttt atttcaatta gaaatgaagg acagtgattt aacgataaat
     4321 gaagcgataa gctttattaa agacgataat ccagatttag acttcgaatt tattcattgg
     4381 ctagtttctg gcgttaaagg tcacgaacct gtattagacg agacaattag tccttattta
     4441 aaagattgga ctattgcacg tttattaaaa acggatcgta ttattttaag aatggcaaca
     4501 tatgaaatat tacacagtga tacacctgct aaagtcgtaa tgaatgaagc agttgaatta
     4561 acaaaacaat tcagtgatga tgatcattat aaatttataa atggtgtatt gagtaatata
     4621 aaaaaataaa attgagtgat gttatatgtc agattattta agtgtttcag ctttaacgaa
     4681 atatattaaa tataaatttg atcaagatcc acatctccaa tctgtattga ttaaaggtga
     4741 gctttcaaat ttcaaaaagc attcaagtgg tcatttatac tttaatgtga aagataaaga
     4801 aagcgttata agtgccatga tgttcaaagg tagtgcttct aaattaaact tcgaacctaa
     4861 agaaggagat gaagtcttat tagaagcacg tgtttctgtt tttgaacgtc gtggaaacta
     4921 tcaaatttat gtaaataaaa tgcaattaga tggtataggg aacttatatc aaaaattaga
     4981 agcattaaag aaaaaattaa ctgaagaagg ttgttttgat aaagcgaata agaaatcaat
     5041 acctaagttt cctaaaaaaa ttgcagtttt aacagcgagt acaggtgccg caattcgaga
     5101 tatccattca acgataaata gtcgttttcc attagctgaa caaatacaaa ttagtacttt
     5161 ggttcaaggt gaaaaagcaa aagacgacat tattgaaaaa attgaatatg cagatagttt
     5221 aggtgtagat accattattg taggtcgagg cggtggatcc atagaagatt tatggaattt
     5281 caacgaagaa gctgtcgtcc gtgcaatata taattgtaag acaccgatta tatcagcagt
     5341 tggtcatgaa acagacttta cattaagtga ttttgctgca gacatcagag ctgcgactcc
     5401 aactcaagct gctgttattg caacaccaga ccaatatgaa ttgctgcaac aaatacagca
     5461 atatcagttt acattgactc gtttcatcaa gaaacattta gaacaacaac gtaaacatgt
     5521 tgaacatttg tcatcgtatt acaagtttaa acaaccaact ttattgtatg atcaacagat
     5581 acaacgtcga gatgatttag aaaagagact gaaacaacaa attcaggcaa cttttgaaca
     5641 acagagacat cgattaatgc tgttgcaaca acgttataat ttaaaagcat tactaagtag
     5701 tgttaatcaa gaacaacaaa ataatcttca attgacaaac caacttgtta aattattgaa
     5761 ttctaagata ttaagttata aaaatgattt gaaaaataaa gtagaaaact taaacaattt
     5821 aagtccaact aatacaatgt tgcgtggata tgcaattgtt aataaaaaag acgaagtcat
     5881 tacgagtact aaagatttaa cagaaaatga tcaattgaca ttaacaatga aagatggctt
     5941 agtagatgca aaagttacga aagtaaggtg taataatgac taaagaaacg caaagttttg
     6001 aagaaatgat gcaagaatta gagcaaattg ttcaaaaatt agataatgaa acagtatctt
     6061 tagaggaatc attagattta tatcaacgtg gtatgaaact atcagcagct tgtgacacaa
     6121 ctttaaaaaa tgccgaaaaa aaggtgaatg acttaataaa agaagaagct gaggatgtaa
     6181 aaaatgacga atctaccgat gaataaatta atagatgaag tcaataatga attatcggtt
     6241 gcgataaata aatcagtaat ggatactcag ctagaagaaa gtatgttgta ttcattaaat
     6301 gctggaggta aacgcatccg accagttctg ttattactca ctttagattc actaaatacc
     6361 gagtatgagt taggtatgaa gagcgcaatt gcactagaaa tgattcatac atattcactt
     6421 attcatgatg acctaccagc gatggataat gatgattatc gacgaggaaa attaacaaat
     6481 cataaagtat atggtgagtg gactgcgata ttagcaggtg atgctttatt aactaaagca
     6541 tttgaactta tttcaagtga tgatagatta actgatgaag taaaaataaa agttctacaa
     6601 cggctgtcaa tagcaagtgg tcatgttgga atggtcggcg gtcaaatgtt agatatgcaa
     6661 agcgaaggcc aaccaattga tcttgaaact ttggaaatga tacacaaaac aaaaacagga
     6721 gcattattaa cttttgcggt tatgagtgca gcagatatcg ctaatgtcga tgatacaact
     6781 aaagaacatt tagaaagtta tagttatcat ttaggtatga tgttccagat taaagatgat
     6841 ttattagact gctatggtga tgaagcaaag ttaggtaaaa aagtgggcag cgatcttgaa
     6901 aataataaaa gtacgtacgt gagtttatta gggaaagatg gcgcagaaga taaattgact
     6961 tatcatagag acgcagcagt ggatgaacta acgcaaattg atgaacaatt caatacaaaa
     7021 cacttattag aaatcgttga tttattttat agcagggatc actaaaagca aatatatcga
     7081 ttagcaacaa ttgtaaagtt tgaaatgtct caaaaggcat attcaactga cgttgtttgt
     7141 taatcgattt ttctcatgtt gaaacttaaa attatgttga agactttcat ttaaaaaata
     7201 gaattttcaa tttctatacg acaatattcg tatctgtgat atcaatgtga ttttaattaa
     7261 atatgttcaa acaattgacg cttatt
//
LOCUS       DAMQWL010000112         7255 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.113, whole genome shotgun sequence.
ACCESSION   DAMQWL010000112 DAMQWL010000000
VERSION     DAMQWL010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7255
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.113"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(244..936)
                     /locus_tag="PF788_002228"
     CDS             complement(244..936)
                     /locus_tag="PF788_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HDG6304476.1"
                     /translation="MNYSPKQGVRSHGLPHDPFKSSTVPRPIGWISTVSKDGKDNLAP
                     YSQYQNLTWDPPMVMFAANQSVLGDHERKDTVKNAEETGWFVWNMATYDLREAVNLSS
                     KALPPEEDEFNFADVTKEKCIEAPGYRVKESPVHFECEYVQTIRIPTGDPVSTVDIVI
                     GRVAQVHIDDKVILDNGKLDIKSIKPIARLGYYDYTVVNEIFEMKAPAASKEELAGLE
                     GRNFDNQSDEKI"
     gene            1172..1630
                     /locus_tag="PF788_002229"
                     /pseudo
     CDS             1172..1630
                     /locus_tag="PF788_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226788.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1617..1919
                     /locus_tag="PF788_002230"
     CDS             1617..1919
                     /locus_tag="PF788_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304477.1"
                     /translation="MRTNDHITDLDAIELSSGWNYNSKLETGKNALLSDSLLRDIKVL
                     SSNAKGDADILETELRAVINSMSQNEGKSVDALKNSTASLKNNLTKLKEQLDKTTH"
     gene            2073..2432
                     /locus_tag="PF788_002231"
     CDS             2073..2432
                     /locus_tag="PF788_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304478.1"
                     /translation="MILRYATNLKLAKELYQASKPKLQEDKGMIELFEHTFGLQKELV
                     KYVGIAEATTAALYSASFINKNISRLASLSTIGILSVAAYKHFEAGQGKKGAQHALNL
                     LGLATLSLLDTFSCNKK"
     gene            complement(2517..3128)
                     /locus_tag="PF788_002232"
     CDS             complement(2517..3128)
                     /locus_tag="PF788_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HDG6304479.1"
                     /translation="MYTFDAQSLTARENYKLLIGSIIPRPIAFVTTLNQDASVNAAPF
                     SFFNIVNNHPPMIAIAVQRAGGKRKDTALNIERTGDFVVHITDEDNVQDINETAAPLA
                     YGDSELSRTELSLLTSTTIKTPGIKDAKMRFECKLSQMILLGDVLDGADLIIGEIVTY
                     HIDDSIYEGDFKINPHALQAVSRLAGNDYAKLGGIFTIKRPEK"
     gene            complement(3207..3683)
                     /locus_tag="PF788_002233"
     CDS             complement(3207..3683)
                     /locus_tag="PF788_002233"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase"
                     /protein_id="HDG6304480.1"
                     /translation="MAVVYVAGGCLWGVEAFFATIPGIIHTEAGRANGRSSKLDGPYD
                     GYAECVKLHFDDRMLTITDIMNYLFEIIDPYSVNQQGNDIGQKYRTGLYSCVDDHLIE
                     ARQFIERRKDRDQIAVEVLPLSNYIKSAEEHQQHLEKYPEDMHMCHISKDLLNKYK"
     gene            complement(3686..4186)
                     /locus_tag="PF788_002234"
     CDS             complement(3686..4186)
                     /locus_tag="PF788_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6304481.1"
                     /translation="MVLRKVIMQDLDQIIALENIGFSPEEAATREALKLRIEQIQETF
                     IVAEKNDEVIGYINGPVIKERYISDDLFKNVSTNNSEGGYISVLGLVVAPNYQGQGIA
                     GRLLNYFETLAKNHHRHGVTLTCRESLISFYEKYGYRNEGVSESCHGGIKWYNLVKNI
                     KKDDEV"
     gene            complement(4421..5188)
                     /locus_tag="PF788_002235"
     CDS             complement(4421..5188)
                     /locus_tag="PF788_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDG6304482.1"
                     /translation="MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHL
                     HPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRS
                     KYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALS
                     QLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYS
                     NDIEALLRNASSVINDNFVYLDRPTKPGKVKSFLKWF"
     gene            complement(5185..5877)
                     /locus_tag="PF788_002236"
     CDS             complement(5185..5877)
                     /locus_tag="PF788_002236"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HDG6304483.1"
                     /translation="MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSI
                     VITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLL
                     NWSTYQDSIISTEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPP
                     VNTVTDAQLFSKFTGNVVYVVNSENNNRDEVKKGKELIEATGAKLLGVVLNRMPKDKS
                     ASYYAYYGTDES"
     gene            complement(5894..6556)
                     /locus_tag="PF788_002237"
     CDS             complement(5894..6556)
                     /locus_tag="PF788_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein
                     CapA"
                     /protein_id="HDG6304484.1"
                     /translation="MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKY
                     TASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAEL
                     NSFLKVTNQTNSQIITVSVTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAH
                     DNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQ
                     KF"
BASE COUNT         2416 a         1301 c          998 g         2540 t
ORIGIN      
        1 agttaattta caactaaacg ataaatatta tatgcaaaat acatctttaa tattaaagta
       61 ataccaatat tttttcaata aacctagtgt aatatatgtg taattctaaa agattcttct
      121 ttaaaaatat aaataccacg acatattgct ttaacatttt catttataaa gcgaaaaaat
      181 gcatcgctac taagttgaat gtttagtaag gatgcattta attcactaaa atgattaaat
      241 tacttatatc ttttcatctg attgattatc gaaatttctt ccttctaaac ctgctaactc
      301 ttctttagaa gctgcaggtg ctttcatttc aaatatctca ttcactactg tgtaatcgta
      361 atatcctaat ctggcaatag gtttaatcga cttaatgtcc aatttaccat tatcaagaat
      421 aaccttatcg tcaatatgaa cttgggcaac tcttcctata acaatatcta cggtagatac
      481 tggatctcca gttggaatac gaatcgtttg aacgtactca cattcaaaat gaactggcga
      541 ttcttttaca cgatatcctg gagcttctat acatttttcc tttgttacat ctgcaaaatt
      601 aaattcatcc tcttctggtg gcaatgcttt cgatgataaa ttaactgctt ctcttaaatc
      661 atacgttgcc atattccaca caaaccaacc tgtctcttca gcatttttca ctgtatcttt
      721 acgttcgtga tcaccaagaa cggattgatt tgctgcgaac ataaccatag gcggatccca
      781 agttaagttt tgatactgac tataaggcgc taaattatct ttcccatctt tcgatacagt
      841 agagatccac cctattggac gtggtactgt actactttta aatgggtcgt gcggtaaacc
      901 atgacttctt acaccttgtt ttggcgaata attcatacta tcttcacccc ttataagtaa
      961 ttacatttaa ggttacgccc tctttacata agcgtctaat ataaataaac aatttattta
     1021 taagtagaaa ctatatatga cgtggttgct tataatttgc gttcttgatt cgaaaaattc
     1081 agataaggat ttatacaatt aatatttatg atatcttttg taaatttaat taattatagt
     1141 tacttcaatc atgattagtt tataataata aagtgaaatt gaaaaagaca gctattatgc
     1201 gatgagcgaa aaacttcaag taaaacaaga atttaacggc gttacaaggc aatacttgaa
     1261 tttcagaaca gatagtatcg atgatctgga taagttcaaa aaagaattca aacctgttat
     1321 gcacttaaaa ggtgatgcat tcaatcaaca gttacaatct ttgattaaca aatatccaca
     1381 aatacaaaaa aatatgaaat cagagttcat tgcttattat gataaagaaa aaaatagaga
     1441 aacagtaaaa aactatgctt ggaaccttca aaaatctata aatgacatta tgcaatcata
     1501 tcctagcaca aaatttgtac agttttataa agatgatgtt tccccgtcaa tggtagatgg
     1561 aaatggccgt ttaaaatcgg atactaatgt aatttccatc gagggaggaa agtatgatga
     1621 gaacaaatga tcatataacc gatttagatg ctattgagtt aagtagcggt tggaattaca
     1681 attcgaaatt ggagactggc aaaaatgcac tactatcaga tagcctttta agagatatta
     1741 aagtattaag ttctaatgct aaaggcgacg ctgacatact agaaacagaa cttcgtgctg
     1801 taataaactc aatgtctcaa aacgaaggta aatctgttga tgcacttaaa aatagtaccg
     1861 cttctctaaa aaacaatcta accaaattaa aagagcaact cgacaaaact acacattaat
     1921 ttcatacatt ttgagtgaac agaattatat ttccatagca aacattccta aactacacat
     1981 acgttacata attgattcat ttttatagaa acgggtaaaa atgataaagt aatcatcttt
     2041 cacaaaaaat caaatattgg gaggaattaa atatgatttt gcgttacgca acgaatttaa
     2101 aacttgcgaa agagctatac caagccagta aacctaaatt gcaagaagat aagggtatga
     2161 ttgaactgtt tgaacatact tttggcttgc aaaaagaact tgtaaaatac gtcggcattg
     2221 cagaagcaac tactgctgct ttatactcag ctagctttat caataaaaac atttctcgcc
     2281 ttgcatcact atcaacgata ggcattttaa gtgtagctgc ttacaaacat ttcgaagctg
     2341 gccaaggtaa aaaaggtgca caacatgcat taaatttatt aggtcttgct actttaagtt
     2401 tactagatac attttcttgt aataaaaaat agtcttcatt ttagaagcac atactttagc
     2461 acctgtgtac ttttgattca attcataaac ggtataccgc tatagcatgt gttttattat
     2521 ttttctggtc tctttatcgt aaatattccc cctaatttag cataatcatt tccggctaaa
     2581 cgagaaacag cctgtaatgc gtgtggattg attttaaaat caccctcata aatactgtca
     2641 tcaatatgat aagttacaat ttcacctatt attaaatcag ccccatctaa tacatctcca
     2701 agcaatatca tttgcgatag tttacattcg aatctcattt tcgcatcttt aattcctggc
     2761 gtcttaatcg ttgtagatgt taaaagtgat aattctgtac gactcaactc actgtcacca
     2821 tatgctaacg gcgctgcagt ctcattaata tcttgaacat tatcttcgtc tgtaatatgc
     2881 acaacaaagt ctccagtccg ttctatattt aatgcagtat cttttctctt acctcctgca
     2941 cgttgaactg caatagcaat cattggcgga tgattattaa caatattaaa aaagctaaat
     3001 ggtgctgcat ttactgatgc atcttgattt aatgttgtaa caaaagctat aggtcgtgga
     3061 ataattgaac caattaataa tttatagttt tctctagcag ttaatgattg tgcatcaaac
     3121 gtatacataa tacctacctc ttttctaagt atatctaggt atttctccga ttttggttaa
     3181 tttaaacatc tattctcctc tgaaaatcac ttgtatttat ttagcaaatc ttttgaaata
     3241 tgacacatat gcatatcttc tggatatttt tctaaatgtt gctgatgttc ttcagcactt
     3301 ttaatgtagt tagacagcgg taagacttcc actgcaattt gatctctgtc tttacgtcgt
     3361 tcaatgaact gacgcgcttc aattaagtgg tcatctacac aactatataa acccgttcga
     3421 tacttttgtc caatatcatt tccttgttga ttcacactgt aaggatcaat gatttcaaat
     3481 aaataattca taatgtctgt aattgttaac atacgatcat cgaaatgaag tttgacacat
     3541 tcagcataac catcatacgg accgtctaat ttagagcttc ttccatttgc tcttcctgct
     3601 tctgtatgta taattccagg tattgttgca aaaaatgctt caacacccca taaacatcct
     3661 cctgctacat aaacaactgc catatttaca cctcatcatc cttttttata tttttaacaa
     3721 ggttatacca tttaataccg ccatgacatg attctgatac accttcatta cgatacccat
     3781 atttttcata aaatgaaatt aatgattctc gacatgttaa cgttacacca tgtcgatgat
     3841 gattcttagc aagagtttca aaatagttta gtaagcgacc tgcaataccc tgaccttgat
     3901 aatttggtgc tacaacaaga cctaacacac taatatagcc accttcacta ttatttgtgg
     3961 agacattttt aaataaatca tcgctaatgt aacgctcttt tatgactgga ccgttgatgt
     4021 atccaattac ttcatcattc ttttcagcta caataaaagt ttcttgaatt tgttcaattc
     4081 tcaatttcaa tgcctctcgt gttgcagctt cttccggtga aaaaccaata ttttcaagtg
     4141 caataatttg atctaagtcc tgcatgatta cttttcttaa taccataaaa acacttcctt
     4201 agccctatat atcaaaagta ataccttcat ctttatattc attattttca aactaccttc
     4261 actataaaaa acgagtcttt ttattgaaag ccattcgcct taatcaatta gacaagttgt
     4321 attatacgaa ttagtaaata atcatgatta taattcattt taagcatact caaaaagact
     4381 ggtacatgta taccagtcta attcgaaaaa atatatttag ttaaaaccat ttcaaaaacg
     4441 acttcacttt tcctggctta gtcggtctgt ctaaataaac aaaattatca ttgattactg
     4501 aactggcatt tcgaagtaat gcttcaatat cattcgaata tttcttcaat ttatgattgt
     4561 gaaataattc ttgcatcaaa aatggtcttt ggtcacatga atgtgcatct gaagctacaa
     4621 aatgagccaa attacattct ataaattgta atgataactt ttgaatgttt ttaccaaatc
     4681 caccaactaa agaactcgat gttaattgac tcagtgcccc atttgcaacc aattcatata
     4741 atatttccgg atttttggcg atacttctat ttctttcagg atgtgcaatg attggtatgt
     4801 aacctctcga ttgtatttca aaaaacaatt gttttgtata atgtggtact tcgcccgttg
     4861 gaaattcaat taataaatat ttcgaacgat taataccttg aatactacca ttatctaagc
     4921 ctttcagaat cgaatctgta attctaattt cttgcccggg aaataattta atatccaatg
     4981 cttgaacttc tggatgcgtt cttaactccg ccaatttcac aagcacttgt tgaaatgtat
     5041 tatcatatct cggatgcaaa tgatgaggtg tcgctacaat acttgttaca ccttcatcct
     5101 tagcttgctt taatagtgca atactctttt caattgtttt aggaccatca tctatatcaa
     5161 ctaatatatg gttatgaata tcaatcatga ttcatcagtc ccataatatg catagtaact
     5221 agcactttta tctttaggca ttctatttaa gactacacct aataatttag cacctgttgc
     5281 ttcaataagt tcttttcctt ttttaacttc atctctatta ttattttccg aattaactac
     5341 gtagacaaca ttgccggtaa actttgaaaa taattgcgca tctgtaactg tgttcactgg
     5401 tggcgtatcg ataattacaa agttataatt catcaataat gtgtcataca aatttgcaaa
     5461 tgcccttgat gtaattaact ctgacggatt cggtgggatt ggcccagacg tcaagacgtc
     5521 taaatcttga atttcagttg agataatact gtcttgataa gttgaccaat ttagcaataa
     5581 acttgatagg ccttcattgt ttggcaaatt aaaaatataa tgctgcgtag gtttacgcat
     5641 atccccgtct acgattagtg ttttataacc tgcttgcgca tatgcaactg ctaaatttgc
     5701 tgcaattgta gacttacctg cgcctggtgc ctctgaagtg attacaatgc tttgaactgc
     5761 actgtcagga tttgcaaaca taatatttga tcttatgcct cgaaatttct cgctaatagg
     5821 tgactttggt tgttcatgga caattaaact tgatgtactt cttcgtgtat tcgtcatggt
     5881 aattcctcgt aaattaaaat ttttgtattg aacctaaaat aggtaatcct agttgcgatt
     5941 caacatcttc ttctgtctta atacgcttat ctaataattc ttttaagaaa ataatcaata
     6001 ttgctaaaac aataccaaca ataatgctga taactaagtt gacagatact attggagata
     6061 cttttacagc attatcatgt gctgaggaaa gtatcgtaac attatcaaca ctcataattt
     6121 taggcatgtc atgagcaaaa actttagata ttttattaac aattttgtca gattcagatt
     6181 tattcccagt ggtaactgat acagtaataa tttgagagtt tgtttgattg gttactttta
     6241 aaaatgaatt caactcagct gttgaatact gaccatcaaa ttctctagat actttatcta
     6301 gaattctagg acttttgata atttccgtat atgtattaac agactgcaaa ctactttgaa
     6361 cattttggaa agctaaatca cttgaggact ttttcatgtt cactaatatt tgagtagaag
     6421 cagtatattt gtcaggcata acaaaaaagg ttaatgccgc acttactaca agacatattg
     6481 ccggtaaaat aagcaataat ttaatattct tctttagaat atttaatagt tttactaaat
     6541 caaacttttc tttcatggtt tcctccacat aatcaatcat tgtattcatt atgtatgttt
     6601 tataaatcgg acaattatat ctagtttaac gaccacaaaa catacacaac tacattttct
     6661 ctaattattt atataaatat tttatcgttt aaaattatat catgattctc taccattatg
     6721 tataacttat ttatattttt gcacaagata taatattgtc caactttaaa tatccaaacc
     6781 tattaataat aaaactagat accatcgtac tctatcatgg ctttcttata atcgagtaga
     6841 agcatcatca ttacttgatt atttgctctt tacaacaccg agcgtgcccg tactcggtaa
     6901 ttcaatacct tgcgtaaccc gtcactgtga gttgggttaa tgataataaa gcccacacct
     6961 tttaaaaaga tgtgggtaat ttatataatt tttatttaca tttttaactt ataaaaaaag
     7021 cgcctatgtc atgatttacc atcacatagg cgcttatcaa taaattatta cttattactt
     7081 tccatttcat ctaatttatg cggatttcct gtaattagat gacaacttat tcttttcagg
     7141 ggaacattac acttttataa tatgttcaaa gacaaactta accattcaca aatataaaga
     7201 ataatattat caaatcattg aacaaatcgt attttgcaac aattgatatt tatat
//
LOCUS       DAMQWL010000113         7244 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.114, whole genome shotgun sequence.
ACCESSION   DAMQWL010000113 DAMQWL010000000
VERSION     DAMQWL010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7244
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.114"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            177..1343
                     /locus_tag="PF788_002238"
     CDS             177..1343
                     /locus_tag="PF788_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304485.1"
                     /translation="MKTIHLFRIYHSFLLKKWYLIIYLLFILAALLITLTTIQHVTED
                     DNHFNIGVVDKDQSSETKLILNSIGKGSNLGKNVSIKAYDDKQAHTLLKKHKLQGYFV
                     FDKGMTKAFYKQGELPISVYTYDQQSMKSVVLSQLTDSVYQRLMRSMGGILAFQDLAP
                     KASHSDSINVMTDLLITGLNRSGAFNLEPIHLYDTGSYYAITGFLTTVFIFALSLFTV
                     LKMNQDTVLKARLKMFHFSKERLLIIRTLITWFYTMLWSIVGVVWIVFSIPNIFELYN
                     WPTLAIHLSYYVTFLILWLLLIELLTTGLLNSISKVILAIVILVLSGLTIPTIFLQHI
                     ANGVFNIQPFAVVTNQLLEIILNNYILELHPSFYLSFIALLIINLAVLVWRYRQ"
     gene            1340..2260
                     /locus_tag="PF788_002239"
     CDS             1340..2260
                     /locus_tag="PF788_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304486.1"
                     /translation="MKPYIQLVVFKQWLQYILLVTTIVIALVLIGIGYRVAHDNFKIP
                     ITIQDLDQTTASKSFVNKIKQSDYVTIKKVDEDESYIEDDVTKKEAILSMQIPKGFSQ
                     KLKENRLKETIQLYGRDDFIGGIAVEIVSSSLYEQQIPNIIYEHLEDMKQHQSIDAIN
                     KSYHKHTPESKIKFVSLTKQAQHSISISLIFAVILFVSAVQVVLHYRLNQQAALQRLS
                     QYHLSRFKLYSTYVMTHTILLLLVLLAVSLYLSQPLSLIFYLKSLLLILIYEIGIVFI
                     LFHIQTISHRLFMTFIYALAMGIVYLIIFM"
     gene            2274..2933
                     /locus_tag="PF788_002240"
     CDS             2274..2933
                     /locus_tag="PF788_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6304487.1"
                     /translation="MIEINNLSKRYRNKQIFNHLTMSFDSNRLTVLLGDNGAGKSTLL
                     RMIAGIEKANDGTINYFGEKWNQRQIQNHIGYVPQDIALFEHMTVAENIKFFKSLCKN
                     PINDTTINEYLQQLNFDDTSAKVSTLSGGNKRKINILVGLLGQPRILILDEPTVGIDL
                     KSRHDIHQLLNIMKSKCLIILTTHHLDEVEALADDIKLIGQDPFYQHVLEDKQWTYTY
                     Y"
     gene            complement(2985..3935)
                     /gene="lytM"
                     /locus_tag="PF788_002241"
     CDS             complement(2985..3935)
                     /gene="lytM"
                     /locus_tag="PF788_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine-glycine endopeptidase LytM"
                     /protein_id="HDG6304488.1"
                     /translation="MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQD
                     VSYGTYYTIDSNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANAN
                     GSGQTYVNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGN
                     GKVNYPNGTSNQNGGSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMP
                     ENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGD
                     QIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYLQSR"
     gene            complement(4261..5253)
                     /locus_tag="PF788_002242"
     CDS             complement(4261..5253)
                     /locus_tag="PF788_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="linear amide C-N hydrolase"
                     /protein_id="HDG6304489.1"
                     /translation="MCTGFTIQTLNNQVLLGRTMDYDYPLDGSPAVTPRNYRWKSRTG
                     TTGQTQYGFIGTGTDMEGFIYGDGVNEHGVAISTQYFRGYSSYGSTHKADAMNITQNE
                     IVTWILGYTTSIEDMKQQASQIHVVAVYLNDIGEVPPLHYHVSDATGHTVEVSFKEGE
                     VVIKDNPIGVLTNHPDLNWHYSNLRQYINISPYPATANLLEGVTIEPLGNEAGTFGLP
                     GGFTSTERFVRMAFMKANIAQNNDKEMDLMNAFYLLDAVNIPIGIVRPHDADNHYTMY
                     QTVINLTTRTLYIKYYGSNELVALKLTDDLINRKDMTIFKPEKHITIRKLNDNQ"
     gene            5487..6863
                     /locus_tag="PF788_002243"
     CDS             5487..6863
                     /locus_tag="PF788_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6304490.1"
                     /translation="MNNTQSSPRSNIIIAIMLSALTYWLFAQSFINIGPLVGQTYQTS
                     PAVLNLSISLTSFATGIFMVAAGDIADKIGQLRMTYMGLIISMFASLLLIISDITALL
                     IIGRILQGLSAAILLPSTVGVLNNQFKGEHLRRAISYLMISTVGGIGLAGVIGGLIAS
                     NFGWQTNFIISIVIAFIAILLLKGTPEKVSQHSHRHPFDYKGMSIFAVMIGSFTLLLT
                     QGFEQGWFSTFSIICLSIFIITTLIFIIIERRHEVPFIDFSVLRNRPFIGAFLNNFVL
                     NSGLGVTVVFFIYAQTHLGLSAAQSGLVTLPYAIVAVAMIRLGEKATLRFGGKLMLII
                     GPLFPVIGITIISMTQLLASQYVIAVIIGFVICAIGNGLVATPGLTIAIFSMPNEKVG
                     LATGLYKMSGTLGGAFGIALSTTVFSMLQLNYAPSVAATVTFIVSIVLMILGSLSAYM
                     IIPKTVKS"
     gene            complement(6940..7244)
                     /locus_tag="PF788_002244"
                     /pseudo
     CDS             complement(6940..7244)
                     /locus_tag="PF788_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277741.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         2273 a         1290 c         1179 g         2502 t
ORIGIN      
        1 aaaagatttc aatagtctat cttcaaaaga ccgtgaaaaa cttgaaaaag aaatcgaaaa
       61 aaatggcggc aaaatgtttg aatcaatttt aaaaaaggca tctaaataac taaaatataa
      121 aaataagatt ggaaggtcat cttgcctttc aatcttatca ttggaggagt ggttaaatga
      181 aaacaataca tttgtttcgc atctaccact cttttttatt gaaaaagtgg tatttgatta
      241 tctatttact atttatatta gcggcactcc ttattacatt aacgacaatc caacatgtaa
      301 cagaagatga caatcatttt aatataggtg tcgtagataa agatcaatca agtgaaacga
      361 aattaatctt aaactctatt ggtaaaggga gtaacctagg aaaaaacgtg agcattaaag
      421 catatgatga taagcaagca catactttgt taaaaaaaca taaacttcaa ggctattttg
      481 tttttgataa aggtatgacc aaggcatttt ataaacaagg cgaactacca atttcagtat
      541 atacatatga tcaacaatcc atgaaaagtg tcgtgctatc tcagctaaca gattctgttt
      601 accaacgtct tatgcgatca atgggtggca tcttagcttt tcaagactta gcaccgaaag
      661 catcacattc tgacagtatc aatgttatga ctgatttgct gattacagga ttaaaccgtt
      721 caggtgcatt taacttagaa ccgattcatt tatacgatac gggcagttat tatgcaatta
      781 caggattttt aacaacggta ttcatctttg cactatcttt atttacagtt ttgaaaatga
      841 atcaagatac tgtattgaaa gcgcgattga aaatgtttca tttttctaaa gagcgtttat
      901 taatcattcg tacgttgatt acatggtttt atactatgtt atggagtatc gttggtgtag
      961 tttggattgt gttcagtatt ccgaatatct ttgaattata taattggcca acgttagcca
     1021 ttcatttaag ctattatgtt acctttttaa tactgtggtt attactcatc gaacttttaa
     1081 caacaggctt gttgaatagt attagtaaag tcatattagc tattgtcatc ctggtgttat
     1141 ctggtttaac aatacctacg atttttttac aacatatagc aaatggtgtt ttcaatattc
     1201 aaccgttcgc agttgtaaca aatcaattgt tagaaattat tttaaacaac tacattttag
     1261 aactgcaccc tagtttctat cttagcttca tcgcactttt gataattaat ttagctgtat
     1321 tggtttggag gtatcgtcaa tgaagcctta tatacaactt gttgtgttca agcaatggtt
     1381 acaatacatc ttgctcgtaa caaccattgt catcgcactc gtacttattg gtatcggtta
     1441 ccgtgtagca catgacaact tcaaaatacc gattaccatt caagatttag accaaaccac
     1501 tgcatcaaaa tcattcgtca ataaaattaa acaatctgac tatgtaacta ttaaaaaagt
     1561 cgatgaagat gaaagctata ttgaagatga tgttactaaa aaggaagcta ttttaagtat
     1621 gcaaattcct aaaggtttct ctcaaaaatt aaaagagaac cgtttaaaag aaacgataca
     1681 gttatatggt agagatgact ttataggtgg tattgctgta gaaattgtta gtagttcatt
     1741 atatgagcag caaattccta acattattta tgaacacctt gaggatatga aacagcatca
     1801 atccatcgat gctatcaaca agtcctatca taaacataca cctgaatcta aaatcaaatt
     1861 tgtgtcgctt actaaacaag cacaacactc tatttcaatt agcttaatct ttgcggtgat
     1921 tttatttgtt agcgctgttc aagtagtact tcattatcgt ttaaaccaac aagcagcatt
     1981 gcaacgatta tcacaatatc atttaagccg tttcaaacta tatagtactt atgtaatgac
     2041 acatacgatt ttgttattgt tggtactatt ggcagttagt ctatatttgt ctcaaccact
     2101 cagcttaata ttttacttaa aatcactgtt acttatattg atttatgaga taggtatcgt
     2161 ctttatctta ttccatattc aaacaataag tcatcgatta ttcatgacat ttatatatgc
     2221 acttgctatg ggtatcgtat acttgattat tttcatgtaa aggagcgtaa ctgatgatag
     2281 aaattaataa cctttcaaag cgttaccgta acaaacagat tttcaatcat ttaactatgt
     2341 cctttgatag taatcgttta accgtattac ttggtgataa tggtgctgga aaatcaacat
     2401 tacttcgtat gattgctggt attgaaaaag ctaatgatgg aactatcaac tatttcggcg
     2461 aaaaatggaa tcaaagacaa atacaaaatc acatcggtta tgtgccacaa gacattgcgt
     2521 tatttgaaca catgacagtg gctgaaaaca ttaaattttt taaatcactt tgtaaaaatc
     2581 caattaacga tacaactatc aacgaatatt tacagcaatt aaactttgat gatacgtctg
     2641 ccaaagtatc tacattgtcc ggtgggaata aacgtaaaat taatatatta gtaggtttac
     2701 taggtcaacc tcgaattctc attttagatg aaccgacagt tggtattgat ttaaaatcta
     2761 gacatgacat ccaccaacta cttaacatca tgaaatctaa atgtttaatt atattaacta
     2821 cccatcattt agatgaagtt gaagcacttg cagatgatat caagttaatt ggccaagatc
     2881 ctttttatca acatgtttta gaggacaaac aatggactta tacctattat taaaacgaaa
     2941 aaatcccaag ctgcgtatga tatcgcaact tgggattttc tgtattatct actttgcaag
     3001 tatgacgttg ggtctactgc atattgatta ccgatgccac cagacatacg ttggaagtgt
     3061 acgtgaggcg ctgttgaatt acccgtacta cctgaatatg caatttggtc accagctttg
     3121 actttatcac cagctgaaac agttaaacga ttattatgca tataccattg gtagttatta
     3181 ctgttcgctt ctttaatcgt tacttgattg ccgccaccat agttactcca acctgcttgt
     3241 actactgtac catcagttaa tgagtaaact ggtgaatttt caggcattgc atagtcgaca
     3301 ccgtaatgcg caccaccacc gtgatattgt ccatatggtt gtagttgttt acgacttgtt
     3361 aaccagcttg cgtctttcgc atgaccacta gctgtcgctt tacttgctga tccaccattt
     3421 tgattagatg tgccattagg ataattgacc tttccattac catcatggct gttatacgct
     3481 tggttgttgt tactatgtga ataatagctc gcgtctggac ctacatttga ttgataacca
     3541 tattgattaa tatgctgttg gctttgactc gctgtgtagt cattgttatc tcctgctgtt
     3601 gctggattca catatgtttg gccgcttcca ttggcatttg cattttttgg ataacagtta
     3661 taaaaataat gcgtatgtcc ttgagcatct acgaatgtat agctatattc tttattatca
     3721 aacattgctt gattccagtt accatcaggt gtgtgatgat aatccccatt agaatcaatt
     3781 gtataataag taccataaga tacgtcttgt gattgtgttg acatttgtgt atgtgcttgt
     3841 tgggtgtttg tcgtttctgc tgcatctgct tgatgcgcca ttgtaaatgt agcgaagccc
     3901 atcgttgcaa tcgctgctgc tgttaatttt ttcatgtata aaacatcctc cattaaagtt
     3961 aaagttagtt ttcaattaaa ctgtactgca catactaaaa gaattagaca actgagtaaa
     4021 ggatttaatt ctcattttcc aactatttaa tattcccgaa atgttttact aaactcatta
     4081 cattgtcatt acaaaatagc catacattga tattaaaatg acatctctca ctgcattcgt
     4141 ttaacctttt ataaattttc aaaattaaca actaatcgtt cgtccatgtt cgcgattcaa
     4201 cgctaatgca tgatagtaat catccatcaa atcatatcaa ccaaattcca ttatcaatcg
     4261 ctattgattg tcattcaact ttctaatagt gatatgcttc tcaggcttaa aaatcgtcat
     4321 atcttttcta ttaattaaat catctgtgag ctttaatgct actaattcat tgctgccata
     4381 atacttaata tataacgttc ttgtagttaa atttattacg gtctgataca tcgtatagtg
     4441 attgtcagca tcatgcggac gtacaattcc aatcggtata tttaccgcat ctaataaata
     4501 aaatgcattc attaaatcca tttctttatc attgttttga gcaatgtttg ctttcataaa
     4561 tgccattctc acaaagcgct cagttgaagt aaatccacct ggcaatccaa atgtacctgc
     4621 ttcattgcct aaaggttcaa tcgttacacc ttccaataaa tttgctgttg ctggataagg
     4681 agaaatattg atatattgtc ttaaattact ataatgccaa tttaagtctg gatgatttgt
     4741 taagacacca ataggattat cttttataac cacttcaccc tctttaaatg aaacttcgac
     4801 tgtatgtcca gttgcatcgg aaacatgata atgcaatggc ggaacttcac cgatgtcatt
     4861 taaatataca gctacaacat gtatttggga tgcttgttgt ttcatatctt caatgcttgt
     4921 tgtatatccc aaaatccatg tcacaatttc attttgcgta atattcatcg cgtccgcttt
     4981 gtgtgttgat ccatatgaac tataacctcg gaaatattgt gttgaaatgg caacgccatg
     5041 ttcattaaca ccatcaccat aaataaaacc ttccatatct gttcctgtgc caataaagcc
     5101 atattgcgtt tggcctgtcg tgccagtgcg agatttccaa cgataatttc taggcgtcac
     5161 tgctggcgaa ccatctaatg gataatcata atccatcgtg cgtccaagaa gtacttgatt
     5221 atttaaagtt tgtattgtga atcctgtgca cattgttctc actcctctgt accttcattt
     5281 actttaatca ctttcaaata aagctgtttc acttaaacat actataaaaa atcaattata
     5341 caagcaatta attgatattc attctcaata actgtggtat gatatgtaag gaaatcatga
     5401 cttatgtgtg agtgaacgat catctataca tccgttcact tcatctcatg actttctata
     5461 tttaattttt acaaggagtg acatctgtga ataacacaca atcttcacca cgcagtaata
     5521 ttattattgc gattatgttg tctgcattaa catattggtt gtttgcacaa tcatttatta
     5581 atataggacc tctcgttggt caaacgtatc aaacctctcc tgccgtgtta aatttatcta
     5641 ttagtttaac ttccttcgcc acaggtatct tcatggtggc tgcaggtgat attgctgata
     5701 aaataggaca actgagaatg acatacatgg gtctcataat cagtatgttt gcatctcttc
     5761 tattaattat atcggacatc actgcactgc tcatcatcgg tagaatttta caaggtctat
     5821 cagcagctat cttgttacct tcaacagttg gcgtgttaaa taatcaattt aaaggagaac
     5881 atttaagacg agcgattagt tatctaatga ttagtactgt tggtggcatc ggcctagctg
     5941 gtgttatcgg cggtttaatt gcctcaaatt tcggatggca aacgaatttc atcattagta
     6001 tagtcattgc tttcattgcc atattgcttc taaaaggcac acctgaaaaa gtaagtcaac
     6061 atagccaccg tcatccattc gattacaaag gtatgtcgat tttcgctgtt atgattggta
     6121 gctttacatt attgttaaca caaggattcg aacaaggttg gtttagtaca ttttcaatca
     6181 tttgtctgag catttttatc atcactacgt tgatattcat catcatcgaa cgtcgacatg
     6241 aagtaccttt tattgatttc tcagtattac gcaaccgtcc gttcattggt gcatttttaa
     6301 ataactttgt tttaaatagc ggtctaggcg taacagtggt ctttttcata tatgctcaaa
     6361 cacaccttgg tttatcagct gcgcaatctg gacttgttac attgccatat gccattgtgg
     6421 cagttgcgat gattcgttta ggtgaaaaag caacattacg tttcggtggc aaattgatgc
     6481 tcatcattgg tccgttgttc cctgtcatcg gcatcactat tattagcatg actcaattat
     6541 tggcatcaca atatgtcatt gcagttatca ttggtttcgt catatgtgcg ataggtaatg
     6601 gtttagtcgc aacacctgga cttacgattg caattttcag tatgcctaat gaaaaagttg
     6661 gtttagctac aggattatat aaaatgagtg gtacattagg tggcgccttt ggtatagcac
     6721 taagtactac agttttcagt atgttacaac taaactatgc accaagtgta gctgcaaccg
     6781 taacatttat agtcagcatt gtattgatga tccttggctc attgtctgca tacatgatca
     6841 ttccaaaaac agttaaatct taaatataat agaagaatta tgtttcgaaa tatctttatc
     6901 actttaaaat gatatacaag aaatccaaga aaaataagcg aactgaataa ataaagattc
     6961 aattaacgca tcagtattag gattcactct aaaacgatta atagttttat aagaaggtgt
     7021 ttgatcttga gctaaccaca tcattcgaat actgtcatga agtaatttct ctattctacg
     7081 accagaaaat acagattgag tatatgcata taagatgatt tttaacatca tctttggatg
     7141 ataggatgtt gcgccacgat gatgtctgaa ttcatcgaat ttgctatcag gtatcgtttc
     7201 aacaatttca ttaacatgtc gcgaaatatc attttgagga attc
//
LOCUS       DAMQWL010000114         7208 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.115, whole genome shotgun sequence.
ACCESSION   DAMQWL010000114 DAMQWL010000000
VERSION     DAMQWL010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7208
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.115"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(1..1362)
                     /locus_tag="PF788_002245"
     CDS             complement(1..1362)
                     /locus_tag="PF788_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDG6304491.1"
                     /translation="MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILL
                     TYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGM
                     AEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIG
                     LIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVT
                     AGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGI
                     PFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFA
                     SSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNA
                     TYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAK
                     SNK"
     gene            1710..2831
                     /locus_tag="PF788_002246"
     CDS             1710..2831
                     /locus_tag="PF788_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001662816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDG6304492.1"
                     /translation="MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEE
                     VIFLLWNYRLPNEEELAHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYI
                     AHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYM
                     LRGELPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPL
                     HGGANEQVMTMLSEIGSIENVDAYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSR
                     QITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSR
                     SAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK"
     gene            2880..4148
                     /gene="icd"
                     /locus_tag="PF788_002247"
     CDS             2880..4148
                     /gene="icd"
                     /locus_tag="PF788_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDG6304493.1"
                     /translation="MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAA
                     VEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIR
                     SLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTT
                     EVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLV
                     HKGNIMKFTEGSFKQWGYDLALSEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEG
                     KIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYE
                     TGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASK
                     VVTYDFARLMDGAEEVSTSAFADELIKNLK"
     gene            4538..5242
                     /locus_tag="PF788_002248"
     CDS             4538..5242
                     /locus_tag="PF788_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6304494.1"
                     /translation="MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVES
                     EQPDLIILDVMLPKKDGIDVCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMT
                     KPFSPREVVARVKAILRRSQFVKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPK
                     EFELLLYLIERQGRVITREHMLNTVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLI
                     KTVRGLGYKLERPKEQ"
     gene            5242..6903
                     /locus_tag="PF788_002249"
     CDS             5242..6903
                     /locus_tag="PF788_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HDG6304495.1"
                     /translation="MKFHHRLMLLISSILIISFVTLGIIIHASITYVLSEKHEQALAT
                     DARSYIYLVQDNEIDKVKKIVKQQNIDLLITKHDKKVFSSGKLKAIPNSDSYIQKRDV
                     FIFNKKVNGYHVWIKGYNNDITEMHWTLWKYLILTCLVVLICLYFASRSFKRTLIRPI
                     QEVTYATQLLANGYYHIRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTT
                     IENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQVGYHGYVNTEIEQLILESFKVE
                     KPIYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLENLRREFV
                     ANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLVTDLLDLSH
                     IEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESKIAQVIT
                     NLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARS
                     RDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILKDYKE"
BASE COUNT         2604 a         1025 c         1342 g         2237 t
ORIGIN      
        1 ttatttattt gatttagcag cgatacgttt atatcttaag tacataaatg ctaaaagtat
       61 aaaccaaatc ggaataaaat aaattgcacg tcttgtatca acattaataa ataataaccc
      121 gaacacaaaa atgaagaata caaatattaa gtagcccata tatttgccac ctaatagttt
      181 gtacgtagca tttttatgta gatctgggtt tttacgacta taattgatat atgcaatgat
      241 aatcagaccc catacaacta aaaataacac tgtagagatg gtagtcacat acgtaaatac
      301 ttttgtcgca tctgggaaaa tatagtttag taatgctgcc acaagtaata atgctgatga
      361 agcaaagatt gcaacatgtg gaacgccata tttattcgtc ttagaaaagt tcggaggtgc
      421 ttgttgttga cttgataaac cgaaaagcat acggctattt gagaatatac cactgttaca
      481 tgatgaagca gcagcggtta atactacaaa attaatcaag cccgcagcaa acggaattcc
      541 gatcaatgcg aataatttta cgaatggact gttatcagga tcaacttgct gccaagggat
      601 aatagacatg ataaccgcta acgccccaac gtaaaatatt aaaattctaa tgggtacact
      661 gttaattgct tttggaattg ttttaactgg atcttttgtt tccccagctg taacaccaat
      721 catttcaatt cctacaaatg agaatagtgc catttggaaa gacataaaga atccagaagc
      781 acctttagcg aatatgccgt gttcatatag atttgtgaaa ctggcatgcc cgaattgagt
      841 tttaaatgca aatagaatca tgacgaaacc aactactatt aaaccaataa ttgtcgctat
      901 tttaatgata gagaaccaaa attctaattc tccgaaaagt cttgcgctaa gtaggttgaa
      961 tgacattaat aacagtacac aaaatagtgc acttatccag tttggaattt ctgggaacca
     1021 aaagctaaca tattttgcca cagccgttac ttcagccata cctgtaataa tccaacagaa
     1081 ccagtatgtc catccggtaa caaatcctgc aaaaggccca atatatgtat tggttacatc
     1141 tgcgaaagat ttaaattcag tattctgtat aatgatttct cctaaacctc gcataaacat
     1201 aaataacata aatcctataa tgatgtatgt taatagaatt gaagggccgg ttaatgcaat
     1261 cgtttgacca gcacctaaga ataagcctgt accaattgca ccgccaattg caattaattg
     1321 tatgtggcga ttgctcagtt ccctttgtaa tttttcagcc ataatacatc tcccttaaat
     1381 atagatatgt ttattatgca cttatattga gatatataca attattttcg gtaaaaatgt
     1441 gtaaaattcc atgttaatat actttggttt ttataatcat atataataac caattgaaaa
     1501 tttaattcta ttgtaaaatt catggattat tcacatcttg aaaaagcttt aatggtgcta
     1561 tttgtggcta ttctgtgaca tttacataga tttacaaaaa aattgttgca catataatgc
     1621 cagtttttat atttcacaaa cgaaatgcgt ttagctataa tattagttga aagccatttc
     1681 ataaagaaac agtaaagggg aaatttatca tggcagaatt acaaagaggt ttagaagggg
     1741 ttatcgcagc ggagactaaa ataagttcaa ttattgaaag tcaattgact tatgccggct
     1801 atgatattga tgatctagct gaaaatgcgc aatttgaaga agttattttc ctattatgga
     1861 actatagatt gccaaacgaa gaagagcttg ctcatctaaa agggaaatta aatcaataca
     1921 tgacattaaa tcctcgtgtg tatacacatt ttgaggagta tgttacagat cacgtgcatc
     1981 caatgacagc attacgtacg tcattatcat atattgcaca tttcgatcct gatgctgaaa
     2041 atgaatcaga tgaaaatcgt tatgaaagag caatgcgtat acaggctaaa gtagcatcat
     2101 tagttacagc gtttgctcga gtaagacaag ataaagaacc acttaagcct aatcctgact
     2161 taagttatgc ggcaaacttc ctatatatgt tacgtgggga attaccaaca gatatagaag
     2221 tagaagcctt caataaagca cttattttac acgctgatca tgagttgaac gcatctgcat
     2281 ttacggcacg ttgtgcggta tcatcattgt cagatatgta ctcaggtatt gtagcagccg
     2341 taggttctct gaaagggcca ttacatggtg gtgcaaacga acaagttatg acgatgttat
     2401 ctgagattgg gtcaattgaa aatgttgatg cttacttaga tgaaaaattt gctaataaag
     2461 ataaagtaat gggcttcggt catcgtgtat ataaagatgg tgatcctaga gcgaaatatt
     2521 taagagaaat gagccgtcaa attacgaaag acgctggtcg tgaagaatta tttgaaatgt
     2581 cagtgaaaat ggaaaaacgt atggcagaag aaaaaggatt aattcctaat gttgattttt
     2641 atagtgcgag tgtttatcac tgtatggaaa tacctcatga cttattcacg ccaatctttg
     2701 ctgtaagtcg ttctgcagga tggattgctc atattttaga acaatataaa gataatagaa
     2761 ttatgcgtcc tagagcgaaa tatattggcg aaacgaatcg taagtatatc ccgcttgaag
     2821 aaagaaaata atcaatacaa attaaaaatg aagatgtaaa atttggaggt aaaataacta
     2881 tgactgcaga aaaaattact caaggaactg aaggattaaa cgtacctaat gaaccaatta
     2941 tcccatttat tatcggtgat ggaattggac cggatatttg gaaggcagca agccgagtta
     3001 tagatgctgc tgttgagaaa gcctataatg gcgaaaaacg cattgaatgg aaagaagtgc
     3061 tagctggcca aaaagcattt gatacaactg gtgaatggtt acctcaagaa acacttgata
     3121 caattaaaga atatttaatt gctgttaaag gacctttaac aacaccaatt ggtggtggta
     3181 ttagatcatt aaatgtggct ttacgccaag aattagattt atttacttgc ttaagaccgg
     3241 tacgttggtt taaaggagta ccatcacctg ttaaacgtcc acaagatgtt gatatggtta
     3301 ttttccgtga aaatactgaa gacatttatg ctggtattga atttaaagaa ggtacaacag
     3361 aagttaaaaa ggtaattgac ttcttacaaa acgaaatggg tgcgacaaac attcgattcc
     3421 cagaaacttc aggtattggt attaaaccag tttctaaaga aggaactgag cgattagtta
     3481 gagcagctat acaatatgct atcgataata accgtaaatc agttacttta gttcataaag
     3541 gtaatattat gaaatttaca gaaggctcat ttaagcagtg gggttacgat ttagcattat
     3601 ctgaatttgg tgatcaagta ttcacttggc aacaatatga cgaaattgtt gaaaatgaag
     3661 gcagagatgc tgctaatgct gctcaagaaa aagctgaaaa agaaggcaag attatcatta
     3721 aagattctat tgctgacatt ttcttacaac aaattttaac tcgtccagct gagcatgatg
     3781 ttgtagcaac tatgaacttg aatggtgact atatttcaga tgctttagct gcacaagttg
     3841 gtggtattgg tattgcgcca ggtgcaaaca ttaattatga aacaggtcat gctatttttg
     3901 aagcaacaca tggtacagct ccaaaatatg caggtttaaa taaagtgaat ccatcttcag
     3961 taattttaag ttctgtatta atgttagaac atttaggatg gcaagaagcg gcagataaga
     4021 ttacagattc aattgaagat acaattgctt caaaagttgt tacttatgac tttgcccgtt
     4081 taatggatgg tgctgaagaa gtttctacat cagcatttgc agatgaattg attaaaaatt
     4141 taaaataagc aaaataaaat taggtgagtc tagcaacttt aattgctagg ttcgcctttt
     4201 taaatgaatt gaagttggca acaggataga aataataaag agtcaccaat gattgattat
     4261 gtagtgtttc ttacacatta gacaaagcga atatgtacat aagcttagga ataaatgagt
     4321 aaaactcatg cataggtagt gggatagaaa tgctattttt acagaattta tttcgttgtc
     4381 ccagagtaag tcatgcaaat gatagaagga aatataagaa gtattttatt tatatgtaaa
     4441 gtaatgtaaa aaatgtgtaa agataatgtg taggatgtta tttttataaa tagttcggtt
     4501 ataatgtaaa tataattata agttagggag gcataccatg tcgcaaaaag tgttggtagt
     4561 agatgacgaa cattcaatcg taacattact taaatataac ttagaaacag ctggttatga
     4621 agttgttgtc gcatttgatg gtgatgaggc tttagaaaag gtagaaagtg aacagccaga
     4681 tttaattatt ttagatgtta tgctacctaa aaaagatggc attgacgtat gtaagactgt
     4741 aagaacaaat aaaaatttag tccctatatt aatgttaacg gcgaaaaatg atgaatttga
     4801 tcgggtatta ggtttagaat taggtgccga tgactatatg actaagcctt tttcacctag
     4861 agaagttgtt gcccgtgtga aagccatttt aagacgttct caatttgtaa aagaagtaga
     4921 agagattgac gatgatatta ccatcggatc gatacgtatt agacccgatt attttgaagt
     4981 atataagcat aatgagttat tggagctaac accgaaagaa tttgaactct tgctttattt
     5041 gatagaaaga caaggcagag tcattacgag agagcatatg ttaaatacgg tatggaatta
     5101 tgaatttgca ggagactcaa gaattgttga tgtacatatc agtcatttaa gagataaatt
     5161 agaagataat cctaagaagc cacaacttat taaaactgtg cgtggcttag gctataaatt
     5221 ggaaagacct aaagaacaat gatgaagttt caccaccgct taatgttatt gataagcagt
     5281 atattaatta tcagttttgt tacattaggc attattattc acgcttccat cacatatgtt
     5341 ttatcagaaa aacacgaaca agctctagca acagatgcaa gatcatatat ttatttagtc
     5401 caagataatg agattgataa agttaaaaaa attgtaaaac agcaaaatat agatttattg
     5461 ataactaagc atgataaaaa ggtgtttagt agtggcaaac tgaaagctat cccaaatagt
     5521 gatagctata ttcaaaaaag ggacgttttt atttttaata agaaggttaa cggttatcat
     5581 gtatggatta aaggttacaa taacgatatt acagaaatgc attggacgtt gtggaaatat
     5641 cttattttga catgtttagt tgtactcatt tgtctgtatt ttgcaagccg tagttttaag
     5701 cgtacattaa tccgtcccat tcaagaagtt acttatgcaa cacaattgtt ggcaaatggt
     5761 tattatcaca tacgtgtacc tgaaagtaat gttgtagaaa ctaaagcgct ttttgtgtct
     5821 accaatgatt tagcacgacg ccttcaaaag cttaataatg agcaaaaaat tcaatccaac
     5881 cgtttaaaaa caacgattga aaatattcca agtgctattt taatgataga tcgaaatgga
     5941 aaaatcgttg ttgcaaataa agcgtattat gaacagttca acatctcgca taatattgaa
     6001 caagtaggct atcacggcta tgttaatact gaaattgagc aattaatttt agaaagtttt
     6061 aaagttgaaa aacctattta tgaacaattg gaagttgcaa taaaccaagt ccatgccaag
     6121 tactttgata tttcatgcgt tccgatttta actaggtctc aaaaaagttt gcaagggatt
     6181 ttagttgtga tgcatgatat aacaaatctg aaacaacttg aaaatctaag acgtgaattt
     6241 gtagcaaatg tttcacatga attaaaaaca cctattactt caattaaggg gtttgctgaa
     6301 acgcttattg atggtgcaaa aaatgatgcg gaatcattag acatgttttt aaacataatt
     6361 ttaaaagaat caaatcgaat agaatcttta gtaacagatc tgttagattt atcgcatatt
     6421 gagcaacata cagagttaga tacagactat atgaatttat cagatttaac gcggcgtatt
     6481 attgataata tgatgactca agccaatcaa aaaaatattt ccattcatac tgatattgaa
     6541 aaagatgtca ttgttaaagc acaagaaagt aaaattgctc aagttatcac gaatttgtta
     6601 acgaatgcaa ttaactattc ttatgaagat ggagatatta acgttcgtgt gtatcgagat
     6661 gactttcgtg tcattttcga agtacaagat tttggtatag gtattaaatt agaagaccaa
     6721 caacgtattt ttgaaagatt ttatagagta gataaagcac gaagtagaga ttctggtggg
     6781 acaggtcttg gattatcaat tacaaagcat atagtagagg cccaccaagg caatattgaa
     6841 gtgaatagtc aagttggcaa aggctcaacg ttcaaagtta ttctaaaaga ttataaagaa
     6901 taaaaattaa agtggtaaca gcgcgtgtat ttttcacgaa gttgttgctg cttttttatt
     6961 tcgttcaaat ctctattggt attaaattag agttaatgaa gtggaataaa ttcggttgtc
     7021 aattttgtca tttgtatatg tcgatttgta agttataagt aatagattgc tgtgaatcaa
     7081 gcaattttat aatatattta ttataataaa gaaattttag taacgcgctt gaaatagatg
     7141 cttaattaaa aagtaataag ttttatttga acggaaataa atcttaattt aaacacttga
     7201 atagacaa
//
LOCUS       DAMQWL010000115         7052 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.116, whole genome shotgun sequence.
ACCESSION   DAMQWL010000115 DAMQWL010000000
VERSION     DAMQWL010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7052
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.116"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            213..1196
                     /locus_tag="PF788_002250"
     CDS             213..1196
                     /locus_tag="PF788_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDG6304496.1"
                     /translation="MKKWQFVGTTALGATLLLGACGGGNGGSGNSDLKGEAKGDGSST
                     VAPIVEKLNEKWAQDHSDAKISAGQAGTGAGFQKFIAGDIDFADASRPIKDEEKQKLQ
                     DKNIKYKEFKIAQDGVTVAVNKENDFVDELDKQQLKAIYSGKAKTWKDVNSKWPDKKI
                     NAVSPNSSHGTYDFFENEVMNKEDIKAEKNADTNAIVSSVTKNKEGIGYFGYNFYVQN
                     KDKLKEVKIKDENGKATEPTKKTIQDNSYALSRPLFIYVNEKALKDNKVMSEFIKFVL
                     EDKGKAAEEAGYVAAPEKTYKSQLDDLKAFIDKNQKSDDKKSDDKKSEDKK"
     gene            1387..2313
                     /gene="pstC"
                     /locus_tag="PF788_002251"
     CDS             1387..2313
                     /gene="pstC"
                     /locus_tag="PF788_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDG6304497.1"
                     /translation="MTSSTNVKALIEKNNNKKGKHNDKIIPVILAAISAISILTTLGI
                     LITLLLETITFFTRIPITEFLFSTTWNPTGSDPKFGIWALIIGTLKITVIATIFAVPV
                     GLGAAIYLSEYASDRARRIIKPILEILAGIPTIVFGFFALTFVTPVLRSFIPGLGEFN
                     AISPGLVVGIMIVPLITSLSEDAMASVPNKIREGAYGLGATKLEVATKVVLPAATSGI
                     VASIVLAISRAIGETMIVSLAAGSSPTASLSLTSSIQTMTGYIVEIATGDATFGSNIY
                     YSIYAVGFTLFIFTLIMNLLSQWISKRFREEY"
     gene            2315..3232
                     /gene="pstA"
                     /locus_tag="PF788_002252"
     CDS             2315..3232
                     /gene="pstA"
                     /locus_tag="PF788_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDG6304498.1"
                     /translation="METTDNNRQSLVDQQLVQKHLSSRTVKNKVFKLIFLACTLLGLV
                     VLIALLTQTLIKGVSHLNLQFFTNFSSSTPSMAGVKGALIGSLWLMLSIIPLSIILGI
                     GTAIYLEEYAKNNKFTQFVKISISNLAGVPSVVFGLLGYTLFVGGAGIEALKMGNSIL
                     AAALTMTLLILPIIIVSSQEAIRAVPNSVREASYGLGANKWQTIRRVVLPAALPGILT
                     GFILSLSRALGETAPLVLIGIPTILLATPRSILDQFSALPIQIFTWAKMPQEEFQNVA
                     SAGIIVLLVILILMNGVAIILRNKFSKKF"
     gene            3279..4130
                     /locus_tag="PF788_002253"
     CDS             3279..4130
                     /locus_tag="PF788_002253"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HDG6304499.1"
                     /translation="MAQTLAQTKQISQSHTFDVSQSHHKTPDDTNSHSVIYSTQNLDL
                     WYGENHALQNINLDIYENQITAIIGPSGCGKSTYIKTLNRMVELVPSVKTAGKILYRD
                     QDIFDQKYSKEQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSL
                     RGAAIWDELKDRLHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRV
                     EELVQELKEKYTIIMVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIFSNPSNKKTED
                     YISGRFG"
     gene            4137..4778
                     /gene="phoU"
                     /locus_tag="PF788_002254"
     CDS             4137..4778
                     /gene="phoU"
                     /locus_tag="PF788_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HDG6304500.1"
                     /translation="MAIIRQRYQEQLDDLIKELRRLGANVYVSIENGIKSLSIDDRGF
                     ARQTVKNDKHINQLNYDINERVIMLITKQQPIASDLRMMISSLKIASDLERIGDNASS
                     IANIRLRTKITDDYVLTRLKTMGKLAMLMLKDLDQAFKKKDTVLIREIIERDEDIDDL
                     YSHIINATYLIDNDPFVAAQAHLAARHLERIGDHIINIAESVYFYLTGTHYEQ"
     gene            complement(4918..6732)
                     /gene="pepF"
                     /locus_tag="PF788_002255"
     CDS             complement(4918..6732)
                     /gene="pepF"
                     /locus_tag="PF788_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HDG6304501.1"
                     /translation="MSQGLPLREDVPVSETWDLVDLFKDDQQYYESIDALVQQANQFH
                     HTYATTLNSIEQINTALAELENILIALDRLSNYAELRLSVDTSNIEAQVLSAKLSTTY
                     GKIVSQLSFVESEILELPEEILQQLEESCPYQHYIKQLIKQKPFQLSASVEQVLATLS
                     PTLNSPYDLYGTTKMLDITFDSFEHDGTTYPVDYATFENDYEDNKDPEFRRKSFKSFS
                     DGIRKYQHTTAATYNMQVQQEKIEADLRGFESVIDYLLHSQEVTRDMFDRQIDMIMRD
                     LAPVMQKYAKLLQRIHGLDNMRFEDLKISVDPDYEPEISIEDSKNYIFGALSVLGDDY
                     TNMLREAYDQRWIDFAQNKGKDTGAFCASPYFTHSYVFISWTGKMAEAFVLAHELGHA
                     GHFTLAQKHQPYLESEASMYFVEAPSTMNEMLMANYLFNTSDNPRFKRWVIGSILSRT
                     YYHNMVTHLLEAAYQREVYHKVDQGESLNAPTLNEIMLNVYKQFFGDAVDMTEGAELT
                     WMRQPHYYMGLYSYTYSAGLTIGTVVSQKIKNEGQPAVDAWLETLKKGGSVSPVELAN
                     IAGVDITTEQPLKSTIQYISDLVDEVEKLTDEIEQANN"
BASE COUNT         2467 a         1092 c         1190 g         2303 t
ORIGIN      
        1 catatttaaa tttcgatgat ttttcaggaa gcattttaat tttactaatg aagcaatatt
       61 ttttagatta acaaaaatta atatttacat tttcttaaca attttttatg taacatttac
      121 agtttctaaa aatgaggtta ataattcaag gttaagataa agatgtaatc aatacaaata
      181 ctatttgttg ttcatacagg gaggatattt caatgaaaaa atggcaattt gttggtacta
      241 cagctttagg tgcaacacta ttattaggtg cttgtggtgg cggtaatggt ggcagtggta
      301 atagtgattt aaaaggggaa gctaaaggtg atggctcatc aacagtagca ccaattgtgg
      361 agaaattaaa tgaaaaatgg gctcaagatc actcggatgc taaaatctca gcaggacaag
      421 ctggtacagg tgctggtttc caaaaattca ttgcaggaga tatcgacttc gctgatgctt
      481 ctagaccaat taaagatgaa gagaagcaaa aattacaaga taagaatatc aaatacaaag
      541 aattcaaaat tgcgcaagat ggtgtaacgg ttgctgtaaa taaagaaaat gattttgtag
      601 atgaattaga caaacagcaa ttaaaagcaa tttattctgg aaaagctaaa acatggaaag
      661 atgttaatag taaatggcca gataaaaaaa taaatgctgt atcaccaaac tcaagtcatg
      721 gtacttatga cttctttgaa aatgaagtaa tgaataaaga agatattaaa gcagaaaaaa
      781 atgctgatac aaatgctatc gtttcttctg taacgaaaaa caaagaggga atcggatact
      841 ttggatataa cttctacgta caaaataaag ataaattaaa agaagttaaa atcaaagatg
      901 aaaatggtaa agcaacagag cctacgaaaa aaacaattca agataactct tatgcattaa
      961 gtagaccatt attcatttat gtaaatgaaa aagcattgaa agataataaa gtaatgtcag
     1021 aatttatcaa attcgtctta gaagataaag gtaaagcagc tgaagaagct ggatatgtag
     1081 cagcaccaga gaaaacatac aaatcacaat tagatgattt aaaagcattt attgataaaa
     1141 atcaaaaatc agacgacaag aaatctgatg ataaaaagtc tgaagacaaa aaataataag
     1201 acgcaatttc aaatgtgtct tgaaacatga ttttgatggt gaatcattat ttagagtaca
     1261 aagcttgatt tatcgagacg ctgattttga cattcagtta gtctacaagc ttatcaactt
     1321 aaaatagtgg ttcatcatta ttttacaaat ctaattattt tgggagtaat agaaagaggt
     1381 ttgattatga cttcatctac taatgttaaa gctttaatcg aaaaaaataa taataaaaaa
     1441 ggaaagcata atgacaaaat tataccagtt attttagccg caatttcagc gatttccatt
     1501 ttaacaacac taggtatatt aatcacattg cttttagaaa ccatcacttt tttcaccaga
     1561 attccaataa ctgaatttct attttctact acttggaatc ctaccggttc agaccctaag
     1621 tttggtatct gggcattgat aatagggact ttaaaaatca cagttattgc gactatattt
     1681 gcagttccag tcgggcttgg tgcagcaatt tatttaagtg aatatgcaag tgaccgtgca
     1741 cgacgcataa ttaaaccgat attagaaatt ttagcaggaa taccaacaat tgtgtttggt
     1801 ttctttgcat taacctttgt tacaccagta ttaagatctt tcataccagg tcttggagag
     1861 tttaatgcta taagtcccgg cttagttgtc ggtattatga ttgtccctct catcacaagt
     1921 ttgagtgagg atgcaatggc atctgtacca aataaaattc gagaaggtgc ctatggactt
     1981 ggagcaacta aattagaagt agcaactaaa gtcgtacttc ccgcagcaac atcaggtatt
     2041 gtagcttcaa tcgttctcgc gatttcaaga gcaattggag aaacgatgat tgtatcatta
     2101 gcggcaggta gttcgccaac agcttcatta agtttaacaa gttcgattca aacaatgact
     2161 ggatatattg ttgagatagc gacaggtgat gcaacatttg gatcaaatat ttattacagt
     2221 atttatgctg tagggttcac actatttatc tttaccttaa tcatgaattt actttctcag
     2281 tggatttcta agcgttttag ggaggagtat taatatggaa acgacagata ataatagaca
     2341 atcactcgtc gatcaacaac ttgtccaaaa acatttatca tccagaacgg ttaaaaataa
     2401 agtgttcaaa ctcatatttt tagcatgtac attattagga cttgtcgtac ttattgcgtt
     2461 gttaactcaa acattgatta aaggggtaag tcatttaaat ttacagtttt tcactaattt
     2521 ttcttcttca acaccatcta tggctggcgt taaaggcgcg ttaatcggtt cactttggtt
     2581 aatgttaagt atcattccat tatcaatcat cctaggaata ggtacagcta tatacttaga
     2641 agaatatgcg aaaaacaaca aatttactca gtttgttaaa atcagtattt ccaatttagc
     2701 tggtgtacca tcagttgtat ttgggttatt aggttatact ttgttcgttg gtggtgcagg
     2761 gattgaagcc ttgaaaatgg gtaacagtat attggcagca gcgctaacaa tgaccttact
     2821 gatattacca attattattg tttcaagtca ggaagcaatt agagctgtac ctaactcagt
     2881 acgcgaagct tcttacggct taggtgctaa taaatggcaa acgataagac gtgttgtctt
     2941 accagcagcg ttacctggta ttttaactgg attcattttg tctctttcaa gagcactggg
     3001 agaaacagcg ccacttgtgc taatcggtat accgactata ttattggcaa cacctagaag
     3061 tatattggat caattttcag cattacctat ccaaatattt acttgggcga aaatgcctca
     3121 agaagaattc cagaatgttg catcggcagg cattatcgtt ttactagtta tcttaatctt
     3181 aatgaatggc gttgcgatta ttttacgtaa caaatttagt aaaaaattct aatttaaaca
     3241 atcaatctca tttatctatt aaaaagggag ttttaaatat ggcgcaaaca cttgcacaaa
     3301 ctaaacaaat atctcaaagt catacgtttg atgtctcaca aagtcatcat aaaacaccag
     3361 atgatacaaa ctcacattct gttatatatt caacacaaaa tttagactta tggtatggcg
     3421 aaaatcatgc attacaaaat attaatttag atatttatga aaaccaaatt actgccatta
     3481 taggtccatc tggttgtggc aaatcaacat atattaaaac tttgaatcga atggttgagt
     3541 tagtaccttc tgtgaaaaca gctggtaaaa tattatatcg agatcaagac atttttgatc
     3601 aaaaatattc taaagaacaa ttacgtacaa atgtgggcat ggtctttcaa caacctaatc
     3661 catttccaaa atcaatatac gataatatta cttacggtcc aaagattcac ggtattaaaa
     3721 ataaaaaagt tcttgatgaa atcgttgaga aatcattacg tggcgctgca atttgggatg
     3781 aattaaagga taggttgcac acaaatgcat atagtttatc cggtgggcaa caacaacgtg
     3841 tttgtatcgc gcgttgttta gcaattgaac ctgaagtcat tttaatggat gaaccgacat
     3901 cagcattaga tccaatctca acattaagag tagaagagtt ggttcaagaa ctaaaagaaa
     3961 agtatacaat tattatggtt acacataata tgcaacaagc agctcgtgta tcagataaaa
     4021 ctgcattttt cttaaatggt tatgtcaatg aatatgatga tactgataaa attttctcta
     4081 acccatcaaa caagaaaaca gaagattata tttcaggaag gtttggttga tatataatgg
     4141 caataattag acaacgatat caggagcaac ttgatgattt aataaaagaa ttacgtcggt
     4201 taggtgcaaa tgtctatgtg agtattgaaa atggtataaa atcattaagt attgacgata
     4261 gaggctttgc acgacaaaca gttaaaaacg ataaacatat caatcaatta aattatgata
     4321 ttaatgagcg agttatcatg ttaattacaa agcaacagcc cattgcgagt gatttgcgta
     4381 tgatgatttc ttcattaaaa atcgcctccg atttagaaag aataggagat aatgcctcga
     4441 gtattgccaa tattcgattg cgtacaaaga ttacagatga ttatgtgtta acccgtttaa
     4501 agacaatggg taaattagct atgttaatgt taaaggactt agatcaagca tttaaaaaga
     4561 aagataccgt attaataaga gaaataattg agcgtgatga agatatcgat gacttatata
     4621 gtcatattat taacgcaacg tatcttattg ataacgatcc atttgtcgct gcacaagctc
     4681 atttagcagc aagacattta gaacgtattg gtgatcatat tattaacatc gctgaaagtg
     4741 tttattttta tttaacaggt acacattacg aacaataact taaagttatt actataaaat
     4801 cccttacgat aaatatatat ttctattatt cataaaccct caaaaaaacc aagattctca
     4861 caattagtaa tgtgaaaatc ttggtttata ttgttctact ataaattgtc tcgcatctta
     4921 gttatttgct tgctcaattt catctgttaa tttttcaact tcatcgacta aatcagaaat
     4981 atattgaatt gtagatttaa gtggctgttc tgtagtaatg tctacacctg caatgtttgc
     5041 aagttcgaca ggtgatacac taccaccttt tttcaatgtt tctaaccaag catcaacagc
     5101 tggttggcct tcatttttaa tcttttgaga aacgacagtt ccgattgtta agccagcaga
     5161 atacgtatac gaatataatc ccatatagta atgaggttga cgcatccatg ttaattcagc
     5221 accctcagtc atgtctactg catctccaaa aaattgttta taaacattta gcattatttc
     5281 atttaatgtc ggcgcattta aagattcacc ttgatctact ttgtgataca cttcacgttg
     5341 ataagcagct tctaataaat gggtaaccat attatgataa tatgttctag ataaaattga
     5401 gccaataacc caacgcttaa atcttggatt atcacttgtg ttaaataaat aattggccat
     5461 caacatttca ttcattgtag aaggggcttc aacaaagtac attgatgctt ctgattcaag
     5521 atatggttga tgtttttgag ctaatgtaaa atgacctgca tgacctaatt catgtgctaa
     5581 gacaaatgct tcagccattt taccagtcca agaaataaac acatatgaat gtgtaaagta
     5641 tggacttgca caaaatgcgc ctgtatcttt acctttattt tgtgcaaaat caatccatcg
     5701 ctgatcgtat gcttcacgta acatgtttgt atagtcatca cctaaaacac ttaacgcacc
     5761 gaaaatataa ttttttgagt cttcaattga aatctctggt tcataatcag ggtctacaga
     5821 aatcttcaag tcttcaaaac gcatgttatc taatccgtga atacgttgta aaagtttagc
     5881 atatttctgc ataactggtg ccaagtcacg cataatcata tcgatttgac ggtcaaacat
     5941 atcacgcgtt acttcttgac tatgtaataa ataatcgatg actgattcaa atccacgtaa
     6001 atcagcttca attttttctt gttgtacttg catattatat gtagccgcgg tagtatgctg
     6061 atattttcga atcccatcgc taaacgattt gaaactttta cgtctaaact caggatcttt
     6121 attatcttca taatcatttt caaacgtagc atagtcgaca gggtacgttg taccatcatg
     6181 ttcaaatgaa tcgaatgtaa tatctagcat ttttgtcgtg ccgtataaat cgtaaggact
     6241 gtttagcgta ggtgataaag ttgctaatac ttgttctacc gacgcagata attggaatgg
     6301 cttttgtttt attaactgtt taatatagtg ttgatatgga catgattctt ctaattgttg
     6361 aagtatttct tctggtaatt caagtatttc tgactctaca aatgataatt ggctaacaat
     6421 tttaccgtat gtagtagata atttagcgct caatacttgt gcctcgatat tactagtatc
     6481 tacacttaaa cgtagttctg cataattact taagcgatct aaggcaatta aaatattttc
     6541 taattcagct aaagcagtat taatttgttc gattgaattt aatgttgttg catatgtatg
     6601 atgaaattga tttgcttgtt gtactagagc gtcaatactt tcataatatt gttgatcatc
     6661 tttaaataag tctactaaat cccatgtttc tgaaacagga acatcttctc ttaaaggtaa
     6721 accttgagac atataatcac tcctttggta taatacattc attatacata attttgtctc
     6781 ctaaacgata atgttacgat ttccatgtcg caaggaacaa tgatttttct attagtagat
     6841 agaatattgc ttgaaactga ctgctattgt ttaagttttt aaaaatttat aataaaatgt
     6901 atacaaggaa agtaatgaaa taaaaggaga atgaatatga cattattcga tatgcctaat
     6961 tatttatgga tcacaacatt aataatgatt ttattaacaa tattctgttg cttagtttta
     7021 aataaatggt ttgtatctgc agtaattaca tt
//
LOCUS       DAMQWL010000116         7005 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.117, whole genome shotgun sequence.
ACCESSION   DAMQWL010000116 DAMQWL010000000
VERSION     DAMQWL010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 7005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7005
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.117"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..362)
                     /locus_tag="PF788_002256"
     CDS             complement(<1..362)
                     /locus_tag="PF788_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304502.1"
                     /translation="MKQTFITLGEGLTDLFEFMTMIEYNHQRIDKIIYFHSPQAENKK
                     SSVAIIMNPTTGNHFQAFYIMINAIKYPYPDSNKKFQMINDCAEKFDIPILGIDVQPP
                     QAFHDLSLYYNYLISVLRL"
     gene            432..974
                     /gene="rsmD"
                     /locus_tag="PF788_002257"
     CDS             432..974
                     /gene="rsmD"
                     /locus_tag="PF788_002257"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002470236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDG6304503.1"
                     /translation="MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGL
                     DLFAGSGALGIEALSRGMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRAL
                     KALSKRDIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPF
                     NMIKRYHYGLTDTLLLEKGE"
     gene            976..1458
                     /gene="coaD"
                     /locus_tag="PF788_002258"
     CDS             976..1458
                     /gene="coaD"
                     /locus_tag="PF788_002258"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDG6304504.1"
                     /translation="MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKE
                     GTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELR
                     LTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
                     "
     gene            complement(1520..2659)
                     /locus_tag="PF788_002259"
     CDS             complement(1520..2659)
                     /locus_tag="PF788_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDG6304505.1"
                     /translation="MKSVGLITEYNPFHNGHQYHINQSKKLTNADVTIAIMSGNFVMR
                     GEPAIYNKFTRAKMALSTADLVIELPATASLSSGDHFAELAVKVADYMSVDTIAFGSE
                     NNDIKTLKQLAHSINEIEQSESFSQKVKEGKSYPRIISELLEHHEALASPNNILGISY
                     LKAIAKNAKNINAISIKRENAQHHDSLIQHHQFASGTSIRTSIISQDDHWHHVVPKDI
                     QHLYVTPHITLNQIFPYLKYQIIAMTTDSLKNIYTVTEGFENRLKSNIYEATDFHHFV
                     KLLKTKRYTYTHIQRLLMNVLLNIKPTDVTSNIHAVKVLAMNDRGRQYLKHLKTAFPE
                     RQYITNINKSNAHYFTNEIKATHIYNAISGQQQTDFNTPVIQQYR"
     gene            2786..3343
                     /locus_tag="PF788_002260"
     CDS             2786..3343
                     /locus_tag="PF788_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HDG6304506.1"
                     /translation="MKWSITQLRKYQGKPFEFDQTVSFDNLKESLDLIDLSPITIQGQ
                     LTIKSTEVVADIHITGTYTMPCARTLVPVKVPLDVTTTEVFDLEGYNQYNDDQDDVDE
                     HYHIIKDGMVNLQDIVEDIVIIEKPMRAYSEQSDQMLTVGNGWEVIDEDQLDELAKQQ
                     EQDDSESRQVDPRLQKLQQLYDKEQ"
     gene            3423..3596
                     /gene="rpmF"
                     /locus_tag="PF788_002261"
     CDS             3423..3596
                     /gene="rpmF"
                     /locus_tag="PF788_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDG6304507.1"
                     /translation="MAVPKRRTSKTRKNKRRTHFKISVPGMTECPNCGEYKLSHRVCK
                     NCGSYNGEEVAAK"
     gene            complement(3750..5687)
                     /gene="isdB"
                     /locus_tag="PF788_002262"
     CDS             complement(3750..5687)
                     /gene="isdB"
                     /locus_tag="PF788_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme uptake protein IsdB"
                     /protein_id="HDG6304508.1"
                     /translation="MNKQQKEFKSFYSIRKSSLGVASVAISTLLLLMSNGEAQAAAEE
                     TGGTNTEAQPKTEAVASPTTTSEKAPETKPVANAVSVSNKEVEAPTSETKEAKEVKEV
                     KAPKETKEVKPAAKATNNTYPILNQELREAIKNPAIKDKDHSAPNSRPIDFEMKKKDG
                     TQQFYHYASSVKPARVIFTDSKPEIELGLQSGQFWRKFEVYEGDKKLPIKLVSYDTVK
                     DYAYIRFSVSNGTKAVKIVSSTHFNNKEEKYDYTLMEFAQPIYNSADKFKTEEDYKAE
                     KLLAPYKKAKTLERQVYELNKIQDKLPEKLKAEYKKKLEDTKKALDEQVKSAITEFQN
                     VQPTNEKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYW
                     KDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVD
                     KEAFTKANTDKSNKKEQQDNSAKKEATPATPSKPTPSPVEKESQKQDSQKDDNKQLPS
                     VEKENDASSESGKDKTPATKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVV
                     QTSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNKNTQENKAKSLPQTGEESNKDMTLP
                     LMALLALSSIVAFVLPRKRKN"
     gene            complement(5890..6942)
                     /gene="isdA"
                     /locus_tag="PF788_002263"
     CDS             complement(5890..6942)
                     /gene="isdA"
                     /locus_tag="PF788_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG-anchored heme-scavenging protein IsdA"
                     /protein_id="HDG6304509.1"
                     /translation="MTKHYLNSKYQSEQRSSAMKKITMGTASIILGSLVYIGADSQQV
                     NAATEATNATNNQSTQVSQATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYY
                     FQTVLNNASFWKEYKFYNANNQELATTVVNDNKKADTRTINVAVEPGYKSLTTKVHIV
                     VPQINYNHRYTTHLEFEKAIPTLADAAKPNNVKPVQPKPAQPKTPTEQTKPVQPKVEK
                     VKPTVTTTSKVEDNHSTKVVSTDTTKDQTKTQTAHTVKTAQTAQEQNKVQTPVKDVAT
                     AKSESNNQAVSDNKSQQTNKVTKHNETPKQASKAKELPKTGLTSVDNFISTVAFATLA
                     LLGSLSLLLFKRKESK"
BASE COUNT         2076 a          967 c         1253 g         2709 t
ORIGIN      
        1 agccttaaca cactaattaa ataattataa tataacgata aatcatgaaa tgcttgaggg
       61 ggctgtacat cgatacctaa aattggtatg tcgaattttt cagcacaatc atttatcatt
      121 tgaaactttt tatttgaatc tggatatgga tatttaatag cgtttatcat gatataaaat
      181 gcttggaaat gattgccagt tgtagggttc ataatgattg ctacagatga ctttttattt
      241 tcagcttgtg gtgaatgaaa atagataatt ttatcaatac gttgatggtt atattcaatc
      301 atcgtcatga attcgaacaa atctgttaga ccttcaccaa gtgtaataaa tgtttgtttc
      361 attggtttat cattctcctt tttctcaata aattatatta aataactaaa tgaattggaa
      421 gtgtgaacaa catgcgcgtc attgcaggta aacataaaag taaagcttta gaaagtatgg
      481 aaggccgtaa tacgagacca actatggata aagttaaaga aggtatcttt aatagtttat
      541 atgatgtgtc aggtataggt ttagatttat ttgcaggaag cggggcgctt ggaatagaag
      601 cactctctcg aggtatggat aaggtaatct ttgttgatca aaattttaaa gctgtaaaag
      661 ttattaaatc aaatcttgcg aatttggatt tagaggcaca atctgaagtt tataaaaata
      721 atgcagatag agctttaaaa gcattgtcaa aacgtgatat tcaatttgat gtcattttct
      781 tagatccacc ttataataaa ggtctcattg ataaagcttt aaaactaatt tcagagttta
      841 atttattgaa agaaaatggt atcatcgttt gtgaatttag caatcatgaa gaaatagatt
      901 atcaaccgtt taatatgatt aaacgttacc attatgggtt gacagacaca ttgttattag
      961 aaaagggaga atagcatgga acatacaata gcggtcattc cgggtagttt tgaccccatt
     1021 acttatggtc atttagacat tattgagaga agtacagata gatttgatga aattcatgtc
     1081 tgtgttctta aaaatagtaa aaaagaaggt acgtttagtt tagaagagcg tatggattta
     1141 attgaacaat ctgttaaaca tttacctaat gtcaaggttc atcaatttag tggtttacta
     1201 gtcgattatt gtgaacaagt aggagctaaa acaatcatac gtggtttaag agcagtcagt
     1261 gattttgaat atgaattacg cttaacttca atgaataaaa agttgaacaa tgaaattgaa
     1321 acgttatata tgatgtctag tactaattat tcatttataa gttcaagtat tgttaaagaa
     1381 gttgcagctt atcgagcaga tatttctgaa ttcgttccac cttatgttga aaaggcattg
     1441 aagaagaaat ttaagtaata aaaataacag tattttaggt ttatcatggt ttacaatcct
     1501 aaaatactgt tttcatttgt taacgatatt gctgtatgac aggcgtgttg aaatctgttt
     1561 gttgttgccc gcttattgca ttgtatatgt gtgttgcttt gatttcattt gtgaagtaat
     1621 gtgcattgct tttgttaata ttggttatat attgtctttc tgggaacgct gtttttaaat
     1681 gctttaaata ttgtctgcca cggtcgttca tcgctaatac tttaactgcg tgaatgttac
     1741 tcgtaacatc tgtaggttta atgtttaata atacattcat taacagtctt tggatatgcg
     1801 tatatgtata acgctttgtt tttagtaatt ttacaaaatg atgaaaatca gttgcttcat
     1861 aaatgttaga tttcaaacga ttttcaaaac cttcagtaac agtataaata ttttttaatg
     1921 aatctgtagt catagctatg atttgatatt tcaaatatgg aaatatttga tttaatgtta
     1981 tatgaggtgt tacgtacaag tgttgaatat ctttaggtac cacatgatgc caatgatcat
     2041 cttgactaat gattgatgtt ctaatagatg taccacttgc aaactgatgg tgttgaatta
     2101 atgaatcatg atgttgagca ttttctcgtt tgatagaaat tgcattgatg tttttagcat
     2161 ttttagcaat tgctttcagg taactaatac caagtatgtt gttaggactt gctagtgctt
     2221 catgatgctc taataattcg ctaatgatac gagggtagct tttaccttct tttacttttt
     2281 gtgaaaagga ttcagattgt tcaatttcat taatgctgtg tgctaattgc tttaatgttt
     2341 tgatatcatt attttcacta ccaaatgcaa ttgtatcgac actcatataa tctgcgactt
     2401 taactgctag ttcggcaaaa tgatcgccag atgataaact ggcagttgct ggtagttcga
     2461 taactaaatc agctgttgat aatgccattt ttgcacgagt aaacttatta tagattgctg
     2521 gttcgccacg catgacaaag ttaccactca ttattgcaat agtaacgtca gcatttgtaa
     2581 gttttttaga ttgattaata tgatattgat gcccattatg aaagggatta tattctgtga
     2641 ttaagccaac gcttttcatt tgcaattcgt cctttcggta ttcattatta atattgtaac
     2701 agaacatgat atgttaagaa aaaatcttga caacttgttc ttagaaagtt aaaataaatt
     2761 ttgtgcttgt tagaggtgaa gccatatgaa atggtcaatt acgcaattaa ggaaatatca
     2821 aggtaagcca tttgaatttg atcaaacggt gagttttgac aatttaaaag aatcattaga
     2881 tttaattgat ttatctccaa ttacaatcca aggtcagtta accattaagt caacagaagt
     2941 cgttgcggat attcacatta ctggaacgta tacaatgcct tgtgcacgta ctcttgtacc
     3001 agtaaaagtc ccactagatg taactactac agaagtattt gatttagaag ggtacaatca
     3061 gtataacgat gatcaagatg atgtagatga acactatcac attattaaag atggtatggt
     3121 taatcttcag gatattgtcg aggatatagt tattattgag aaaccaatga gagcttattc
     3181 agagcaaagt gaccaaatgt tgacagtagg taatggttgg gaagtaatcg atgaggatca
     3241 attagatgag cttgctaaac agcaagaaca agatgattca gaatcacgac aagttgatcc
     3301 aaggcttcaa aaattacaac aattatatga taaagagcaa taagtagttt aattaatgat
     3361 ataatgttgt taattaaact aacatttagt atttttcgtt tataatctaa ggaggatata
     3421 tcatggcagt accaaaaaga agaacttcta aaactagaaa aaacaaacgt cgtacgcatt
     3481 tcaaaatttc agtaccaggt atgactgaat gcccaaactg tggcgaatac aaattatcac
     3541 accgtgtatg taaaaactgt ggttcttaca atggcgaaga agtagcagct aaataatttt
     3601 agttactcaa tataaaaagt cccgcttaaa atgattgttt taagtgggac tttttatatt
     3661 gcgaaaaata attggcgaac gaggtaactg gatacctcat ccgccaatta aaatttgtta
     3721 atttaataat taaatataaa gacgatttat tagtttttac gttttctagg taatacgaat
     3781 gcaacgatgc tacttaaagc taataatgcc attaatggta atgtcatatc tttatttgat
     3841 tcttcaccag tttgtggtaa tgattttgct ttattttctt gtgtattttt attgttttgg
     3901 ctttgagtgt gtccatcatt tgtgttttta atgtttgctt tttgtaatgg agcactatct
     3961 tttgcttcgc tagaacctgc tgaagtttga acaacatctt ttgttgtttt tgatgaagca
     4021 gttgttggtt ttgcaacatt ttgagtcgta gatactacct tagttggagt tgtactactt
     4081 gattctactt cacctttagt tggttttgta gcaggcgttt tgtctttacc tgactcacta
     4141 gatgcgtcat tttctttttc aacacttggt aattgtttat tgtcatcttt ttggctgtct
     4201 tgtttttgtg attctttttc aacaggtgat ggtgttggtt tgctaggcgt agctggagta
     4261 gcttccttct tagctgagtt atcttgttgt tcttttttgt tagatttatc ggtattggct
     4321 tttgtaaatg cttctttatc aacgattctg acatggtatt gtccatcata atcaatcgtt
     4381 tttacgtgaa ctttaacgat agcatcatat agagttttac cttcaacata tgggaaaata
     4441 attgttctag tattattttt agcatctttg cttatagttc taacacgttg accttcaacc
     4501 atgaaatctt tccagtaatc gtcattagta gtttccatga ccatatattt tttgccgtta
     4561 agcatacctg ttttaatagg gtgtttaaca aaagtatcca tcatagattc gttattctca
     4621 acactttcat aaacaacata ttttgtatct tgtaaatcag tcattttttc atttgttggt
     4681 tgtacatttt ggaattcagt aatagctgat ttcacttgct catctaaagc tttctttgta
     4741 tcctctaatt tcttcttgta ctcagccttt aatttttcag gaagtttatc ttgaatttta
     4801 tttaattcat aaacttgtct ttctagtgtt ttcgcttttt tatatggcgc taataatttt
     4861 tcagctttat aatcttcttc agttttgaat ttatctgcac tgttataaat tggttgtgcg
     4921 aattccatta atgtgtaatc gtatttttct tctttgttat tgaagtgtgt tgaactaaca
     4981 attttaacag cttttgttcc gtttgataca gagaagcgaa tgtaagcata atctttaaca
     5041 gtatcgtatg atactaattt aattggcaac tttttgtcac cttcataaac ttcaaatttt
     5101 ctccaaaatt gacctgattg taatcctaat tcaatttctg gttttgaatc agtgaaaata
     5161 actctagcag gtttaacaga acttgcataa tgataaaact gttgagttcc atctttcttt
     5221 ttcatttcaa aatcaattgg acgagagttt ggtgcgctat gatctttgtc ttttattgca
     5281 gggtttttaa tcgcttctct aagttcctga ttcaaaatag gatatgtatt gttagtggct
     5341 tttgctgctg gtttaacttc ttttgtttcc ttaggggctt taacttcttt aacttcttta
     5401 gcttcttttg tttcagaagt aggggcctca acttctttat tagatactga gacagcatta
     5461 gctactggtt tagtttctgg agctttttca gatgttgttg ttggacttgc aactgcttca
     5521 gtttttggtt gtgcttctgt atttgtacca cctgtttctt cagctgctgc ttgtgcttcg
     5581 ccatttgaca ttaataataa aagtgtacta attgctacag atgcaacgcc tagtgatgac
     5641 tttctaattg aataaaatga tttaaattct ttttgctgtt tgttcatgtt gtagaaacaa
     5701 ctcctaattg tatattatca actgataatc attatcaatt gattacttgt attgtacatt
     5761 gaaatgttag ttaattgcaa cgttatttta taaaaaaata acctatgtta tagattatga
     5821 aatatctatg acataggtta aataaaattt aaaataaaaa atatattaag ttatgagtgt
     5881 gacgatgatt tatttagatt cttttctttt gaaaagtaat aaagataatg aacctaaaag
     5941 ggcaagtgtt gcgaaggcaa ctgtgctaat aaagttatca actgaagtta aaccagtttt
     6001 tggtaattct ttagctttag atgcttgttt aggcgtttcg ttatgttttg taactttgtt
     6061 agtttgttgt gatttattat cacttacagc ttgattgttg ctttcagatt tcgctgttgc
     6121 aacatcttta acaggtgttt gaactttatt ttgttcttga gcagtttgtg ctgttttaac
     6181 tgtatgagca gtttgtgttt tagtttgatc ttttgttgtg tcagtactta caactttagt
     6241 agagtgattg tcttcaactt tgcttgttgt agttacagta ggtttaactt tttcaacttt
     6301 aggttgaact ggtttagttt gctcagtagg tgttttaggt tgagctggtt ttggttgaac
     6361 cggtttaaca ttgtttggtt ttgctgcgtc agctaatgta ggaattgctt tttcaaattc
     6421 caaatgcgta gtatatctat gattgtaatt aatttgtggc acgacaatat gtactttagt
     6481 agttaagctc ttatatccag gttcaactgc aacattgatt gttctagtat ccgctttttt
     6541 attatcgtta acaacagttg ttgctaattc ttgattgttt gcattgtaaa atttgtattc
     6601 tttccagaat gatgcattgt ttaacacggt ttggaaataa tatttattat tttgtttaat
     6661 tactttacca gggtgttgca tatagtcatc catgtgtgac ttctctgaag agccatcttt
     6721 ttgcacttgg aaattaattg gttgtgatgt tgcttgagaa acttgtgtgc tttgattatt
     6781 agttgcgttc gtagcttctg ttgccgcatt gacttgttgg ctgtctgcgc ctatgtatac
     6841 aagggaacct aaaatgatag atgctgtacc cattgtaatc tttttcatag ctgatgaacg
     6901 ttgttctgat tgatacttac tgtttaaata atgttttgtc atgttgtttt cctcctaagg
     6961 atacaaatta tgtgttgtta tatgagatga ttaaccattg caatt
//
LOCUS       DAMQWL010000117         6869 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.118, whole genome shotgun sequence.
ACCESSION   DAMQWL010000117 DAMQWL010000000
VERSION     DAMQWL010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6869
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.118"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            113..1051
                     /locus_tag="PF788_002264"
     CDS             113..1051
                     /locus_tag="PF788_002264"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HDG6304510.1"
                     /translation="MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNI
                     YQSGKVMFQGNHAEAVSEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDE
                     AGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLT
                     LHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYA
                     LSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVD
                     VIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL"
     gene            complement(1222..3624)
                     /locus_tag="PF788_002265"
     CDS             complement(1222..3624)
                     /locus_tag="PF788_002265"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDG6304511.1"
                     /translation="MLISNEWLKEYVTIDDSVSNLAERITRTGIEVDDLIDYTKDIKN
                     LVVGFVKSKEKHPDADKLNVCQVDIGEDEPVQIVCGAPNVDAGQYVIVAKVGGRLPGG
                     IKIKRAKLRGERSEGMICSLQEIGISSNYIPKSFESGIYVFSEAQVPGTDALQALYLD
                     DQVMEFDLTPNRADALSMIGTAYEVAALYNTKMTKPETTSNELDLSANDELTVTIENE
                     DKVPYYSARVVHDVTIEPSPIWMQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQ
                     DAIGSQQIVVRQANEGEKMTTLDDTERELLTSDIVITNGQTPIALAGVMGGDFSEVKE
                     QTSNIVIEGAIFDPVSIRHTSRRLNLRSESSSRFEKGIATEFVDEAVDRACYLLQTYA
                     NGKVLKDRVSSGELGAFITPIDITADKINRTIGFDLSQNDIVTIFNQLGFDTEINDDV
                     ITVLVPSRRKDITIKEDLIEEVARIYGYDDIPSTLPVFDKVTSGQLTDRQYKTRMVKE
                     VLEGAGLDQAITYSLVSKEDATAFSMQQRQTIDLLMPMSEAHASLRQSLLPHLIEAAS
                     YNVARKNKDVKLFEIGNVFFANGEGELPDQVEYLSGILTGDYVVNQWQDKKETVDFYL
                     AKGVVDRVSEKLNLEFSYRRADIDGLHPGRTAEILLENKVVGFIGELHPILAADNDLK
                     RTYVFELNFDALMAVSVGYINYQPIPRFPGMSRDIALEVDQNIPAADLLSTIHAHGGN
                     ILKDTLVFDVYQGEHLEKGKKSIAIRLNYLDTEETLTDERVSKVQAEIEAALIEQGAV
                     IR"
     gene            complement(3624..4682)
                     /gene="pheS"
                     /locus_tag="PF788_002266"
     CDS             complement(3624..4682)
                     /gene="pheS"
                     /locus_tag="PF788_002266"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDG6304512.1"
                     /translation="MSEQQTMSELKQQALVDINEANDERALQEVKVKYLGKKGSVSGL
                     MKLMKDLPNEDKPAFGQKVNELRQTIQNELDERQQMLVKEKLNKQLAEETIDVSLPGR
                     HIEIGSKHPLTRTIEEIEDLFLGLGYEIVNGYEVEQDHYNFEMLNLPKSHPARDMQDS
                     FYITDEILLRTHTSPVQARTMESRHGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGL
                     VVDKNVKMSDLKGTLELLAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCN
                     VCKHTGWIEILGAGMVHPNVLEMAGFDSSEYSGFAFGMGPDRIAMLKYGIEDIRHFYT
                     NDVRFLDQFKAVEDRGDM"
     gene            complement(5063..5803)
                     /locus_tag="PF788_002267"
     CDS             complement(5063..5803)
                     /locus_tag="PF788_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HDG6304513.1"
                     /translation="MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQS
                     GIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDIS
                     KAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLP
                     VMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQ
                     NLIIPIYGKAESLNVAIAGSILLYHLKG"
     gene            complement(6043..6150)
                     /locus_tag="PF788_002268"
     CDS             complement(6043..6150)
                     /locus_tag="PF788_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304514.1"
                     /translation="MVLLAFVTTIHDTDDGRFFNEHKHANNKLLKHSLI"
     gene            complement(6187..6510)
                     /gene="isdG"
                     /locus_tag="PF788_002269"
     CDS             complement(6187..6510)
                     /gene="isdG"
                     /locus_tag="PF788_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylobilin-forming heme oxygenase IsdG"
                     /protein_id="HDG6304515.1"
                     /translation="MKFMAENRLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQTL
                     EQEDFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNEDESSPIINNKVITYDIG
                     YSYMK"
     gene            complement(6529..>6869)
                     /locus_tag="PF788_002270"
     CDS             complement(6529..>6869)
                     /locus_tag="PF788_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sortase"
                     /protein_id="HDG6304516.1"
                     /translation="GDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTT
                     TKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRI
                     VVVAKIIKVS"
BASE COUNT         2192 a         1324 c          943 g         2410 t
ORIGIN      
        1 gtatccgcaa ttaattcttt acaacataca taaatgtttc tgacgttatt atcatttatg
       61 atatgattat ttttgctaaa gacaatgaaa ttttatgaaa ggatttacac aaatggcgaa
      121 tatcgttttt aaattgtcgg ataaagacat aacgacatta atgtcacgca tttcttttga
      181 tactgagaat ttacctcaag gtatgaaagc acgtgcaaag tatcaaaata caactgtaaa
      241 tatttaccaa tcaggtaaag tcatgtttca aggtaatcat gcagaagctg tgtctgaaga
      301 acttctaccg cagcattctc aattgaatac taataaaact aaaaagaaaa atatggctaa
      361 ttcttttctt gaacaaactt taatgtatga tcaatttaac tgtattggta gtgatgaggc
      421 tggaagtggc gattactttg gtccgttgac tgtgtgtgct gctttcgtta ccaaagagca
      481 tgtccctatt ttaaaaactt tgggtgtaga tgattcaaaa aaattaaccg ataccaaaat
      541 tgtagaactt gctgagcaat tggttacttt cataccacat tcattattaa cactacacaa
      601 tgaaaaatat aatattcagc aagcaaaagg ctggactcaa gtaaaaatga aagctgccct
      661 tcataatgaa gccatcaaaa atgtacttga aaaaattgat tcgtctcaat tagactatat
      721 cgtcattgat cagttcgcaa aacgcgaagt gtatagccat tacgcattat cagatatacc
      781 acttccaaag aaaacaaaat ttgaaacaaa aggagaatcg aagtcattag ccattgcagt
      841 ggcaagcata atttctcgat acgcatttgt tacatatatg gatcaaatat caaaaaatat
      901 taatatgacg attcctaaag gtgccggtgc taaagtcgat gtaatcgccg ccaaaattat
      961 aaaaaaatac ggtctttcac gtttagatac catttcaaaa aagcatttta aaaatcgtga
     1021 aaaagcccaa aaaattttaa agcctctttg atttttaatc attagaggct tttatgcagt
     1081 tgtgcgaagc atcatctgta ttccgctgtt cctctttgac tttttaaatg cattggaacc
     1141 aaattggtga acccaaaaat aaaaccccat gttagggata tcaatctact tcagatatcc
     1201 ttatacatgg ggtttaaatc attatctaat aacagcacct tgttcaatta atgctgcttc
     1261 aatttccgct tgtacttttg aaacgcgctc atctgtcaat gtttcttctg tgtctaaata
     1321 atttaaacgt attgcaattg attttttacc tttttctaaa tgttcgccct gatatacatc
     1381 aaagacaagt gtatctttta atatattgcc accatgtgca tgaatcgttg ataataaatc
     1441 agctgctgga atattttgat ctacttctaa tgcaatgtca cgagacatgc ctgggaatct
     1501 cggaattggc tggtaattaa tgtaacctac cgacacagcc attaatgcat caaaattcaa
     1561 ctcaaaaaca tacgtacgtt ttaaatcatt atcagctgct aatattggat gtaattcacc
     1621 aataaaacca acaactttat tctctaataa gatttcagca gtacgacctg gatgtaatcc
     1681 atcaatatca gcacggcgat aactaaattc aagatttaac ttttcagata ctcgatccac
     1741 gacacctttt gctaaataga aatcaaccgt ttctttctta tcttgccatt gattgactac
     1801 ataatctcca gttaaaatac cacttaaata ttcaacttga tctggtagtt caccttctcc
     1861 attagcaaag aagacattgc cgatttcaaa taattttaca tctttatttt tgcgtgccac
     1921 attatatgat gccgcttcga ttaaatgtgg taataaactt tgacgtaatg acgcatgcgc
     1981 ttcactcatt ggcatcaata aatcaattgt ttgacgctgt tgcatcgaaa atgcagtagc
     2041 atcttcttta gaaactaacg aatacgtaat agcttggtct aatccagcac cttctaacac
     2101 ttctttaacc attctagttt tatattggcg atcagttagc tgaccactag taactttatc
     2161 gaagacaggt aacgttgatg gaatatcgtc gtatccatat atacgtgcaa cttcttcaat
     2221 taaatcttct ttaattgtaa tatctttacg acgtgatggt actagcactg taataacatc
     2281 atcatttatt tctgtatcaa accctagttg attaaaaata gtaacaatat cattttgtga
     2341 caaatcaaat ccaatagtgc gattaatttt atcagcagtg atgtcgattg gtgtaataaa
     2401 tgcaccaagt tctcctgaag acactctatc ttttagcact tttccgtttg cataagtttg
     2461 taataaataa catgcacggt cgactgcttc atctacaaat tcagtagcta ttcctttttc
     2521 aaaacgacta gatgattcac tgcgtaaatt taaacgtctt gatgtatgac gaattgaaac
     2581 tggatcaaaa atagcacctt caatcactat atttgatgtt tgttctttaa cttctgaaaa
     2641 atcgccaccc ataacaccag ctaatgcaat tggagtttgt ccattagtaa tgacaatatc
     2701 gctcgttaat aattcacgtt ctgtatcatc taatgttgtc attttttcgc cttcattagc
     2761 ttgacgaaca acaatttgtt gtgaaccaat cgcatcttga tcaaacatgt gcaatggttg
     2821 accgtattct aataacacat aatttgaaat gtcaacaaca ttattaatag gacgtatacc
     2881 cgcttttatt aagcgtgctt gcatccaaat tggcgagggt tcaattgtca cgtcgtgaac
     2941 aacacgtgca ctataatatg gtactttatc ttcattttca attgtcacag tcagttcatc
     3001 atttgcagat aaatcaagct catttgatgt tgtctctggc ttagtcattt ttgtattata
     3061 taatgctgca acttcataag cagtacctat catacttaaa gcatctgcac gattcggcgt
     3121 taaatcaaat tccattactt gatcatctaa atataaagct tgtaaggcat ctgttcctgg
     3181 aacttgggct tcactaaata cataaatgcc tgattcaaaa cttttcggta tatagttact
     3241 tgaaatacca atttcttgta acgaacaaat cataccttct gaacgttcac cgcgtaattt
     3301 ggcacgctta attttaatac caccaggcaa tctgccacct actttagcaa caatgacata
     3361 ttgtcctgca tcaacgttcg gtgcaccaca aacgatttgt acaggttcgt cttctccgat
     3421 atcaacttgg caaacattta atttatcagc atcaggatgt ttctcttttg acttaacgaa
     3481 gccgacaact aaatttttga tatcttttgt gtagtcaatt aaatcatcca cttcaatacc
     3541 tgtgcgcgta atacgttctg ccaaattact tacagaatca tcgattgtta catattcttt
     3601 caaccattca tttgatatca acattacatg tcacctctat cttctaccgc tttaaattga
     3661 tctaaaaatc tcacatcatt agtatagaaa tgacgaatat cttctatacc atatttcaac
     3721 attgcaatac ggtctggtcc cataccaaat gcaaatccag agtactctga agaatcaaaa
     3781 ccagccattt ctaatacatt aggatgtacc attccagcac ctaaaatttc aatccatcct
     3841 gtgtgtttac acacattaca accttttcct ttacatttaa aacatgacac atcaacttct
     3901 acagaaggtt cagtgaatgg gaagtaactt ggacgtaaac gaatttcacg atcagcacca
     3961 aataatttct tagctaacaa ttctaaagta cctttcaaat cactcatttt aacgttttta
     4021 tcaacaacta atccttcgat ttgtgtaaat tgatgactat gtgtcgcatc atcagagtca
     4081 cgacgataca ctttaccagg gcaaataatt ttaactggac cttgaccatg acgtgattcc
     4141 atcgtacgtg cctgcactgg tgatgtatgc gtacgtaata aaatttcatc cgtaatatag
     4201 aaactatctt gcatatcacg tgcagggtgt gatttaggta aattcagcat ttcgaagtta
     4261 taatgatctt gttcaacttc atatccattc acaatttcat aacctaaacc taagaataag
     4321 tcttcaattt cttctattgt acgtgttaat ggatgctttg aaccgatttc aatatgacga
     4381 cctggtaatg atacatcaat tgtttcttca gccaattgct tatttaattt ttctttaact
     4441 aacatctgtt gtctttcatc taattcattt tgaattgttt gacgcaattc attcactttt
     4501 tgaccaaacg caggtttatc ttcattcggc aaatccttca tcaatttcat tagtccgcta
     4561 actgaccctt ttttacctaa gtatttcact ttaacttctt gcagtgcacg ttcatcattt
     4621 gcttcattaa tatctacaag cgcttgttgt tttaactctg acattgtttg ttgttcagac
     4681 atatgtcact gacctcccta ttcgaactat tcattttcta tttatcatat ttgttgttta
     4741 actaaaaaaa gactttcatc ctcttaaaaa ataagggacg aaagtcattt ccgtggtacc
     4801 acccaaattt atgcctaagc atacacttgt ttaatattga taacggattg tctttccgac
     4861 ttaaatctct ttaagtaacc aaaaaggtga aaagacttta aataattgga ataacttgca
     4921 gtcacgatta ttctccctaa aacaattatt tatataaatg tccatgcctt tttattggtt
     4981 tatattcaat tgtgtatgca ttcacgtaga aatgttctgt taaacaatta attataatta
     5041 tatcggaaaa ctttcaacac ggtcaacctt tcaaatgata aagtaaaata ctacctgcaa
     5101 tcgctacatt taaactttca gctttaccat aaataggtat gattaaattt tgtgtagtat
     5161 gtgctaataa ttcaggatta acaccttctc cctcattacc taatagtaat gcaaaagaat
     5221 cacttgaagt aacttctttg tatgccactg cgttttcaag tgctgtacca taaacaggac
     5281 cattaaattg agtaataaac gtatcgagat cttgtgtcat aactggcaaa tggaaaacac
     5341 taccttgact cgctcgcaac actttatctt gataaggatc tgtcgtaccc ttctccatta
     5401 ttacagcatc cattccagca gcatccgcag ttctaattaa tgtgcctaaa tttccaggat
     5461 cttgaacacg atcgatgagc aatacttgtt gtgctttaga aatatcataa tgcggcttct
     5521 caatgattgc gaaaaaccct tgtggtgtca ctgtacctga taaagattca gcaactttca
     5581 tgtttatttc aaaaacttct tgcgcgtatg cgataatttg ctgatctaat cttgccggtt
     5641 caattgcaaa taattgtgta attacaattc cactttgata agcttcttca attaaatgca
     5701 caccttcaat taaagctaat ccagttttat ccctctcacg tttctttttt agcttgttcg
     5761 cttgtttaat tctattattt tgtgcagaag taatttgttc cattgatagc tcctcgcttt
     5821 atttttaaaa ataaaaatat taatcattaa taagatgaaa acatttgatt gtatagttaa
     5881 tattaattaa tcgcttttat cactcataat atttcaaatt gtataaattt cttttatcga
     5941 tactactact ataaatcata cgccccaaaa tatcattatt aattcttttc ttcttcaaaa
     6001 taaatcaaaa tgatataatt gatgattatt ttcaaagcac attcaaatca aactatgttt
     6061 tagcaatttg ttgttagcat gtttgtgttc attaaaaaaa cgaccatcat cggtatcatg
     6121 tatggtcgtt acaaaagcta acaataccaa ttgtcataac aagtactgca acctctttaa
     6181 attcaattat ttcatgtaac tatagcctat atcatatgta attactttgt tatttataat
     6241 cgggctactt tcatcttcat ttttacttct aacatgttta tgcgctgctt taaagacatc
     6301 agattttaac caatccgtaa aagcttgctt tgatttccaa actgttaaaa ttttcacttc
     6361 atcaaaatct tcttgttcta aagtttgtgt aacaaacatg ccatcaaagc cttctaatgt
     6421 ttcaatccca tgtctcgtgt aaaatcgttc tataatatct tttgctgttc cttttgttaa
     6481 cgtcagccta ttttctgcca taaatttcat aattatcctc ttttctgttt aacttacctt
     6541 aattattttt gcgacaacaa caattctttt cgtcgtttca ctatatgcat cttcgcacgt
     6601 tgataaagtc attattctat cttttaccgt tacattaaca tctgaattaa ttacagattt
     6661 acgttttgtc tcatctaaaa attgttgata atcttgatca ttttcaaaat ctgtacgtat
     6721 gtaattatct ttagtagtag ttttatatgc actaaatact tgcaattgat atttaccata
     6781 tttattgtca aattcaatta tcttgtgttt ttcataaaac gattgcttta aataatcttc
     6841 taacacatca aacatcgtat tatcaccga
//
LOCUS       DAMQWL010000118         6868 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.120, whole genome shotgun sequence.
ACCESSION   DAMQWL010000118 DAMQWL010000000
VERSION     DAMQWL010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6868
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.120"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            364..1350
                     /locus_tag="PF788_002271"
     CDS             364..1350
                     /locus_tag="PF788_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000662030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HDG6304517.1"
                     /translation="MKENFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEF
                     TNTESFCHPEGIHSVRGRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLN
                     MGCPVANVAKKGKGSGLILRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKH
                     VFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGL
                     ELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQF
                     KSLRRFFKIYVRGIRGASELRHQLMNTQSIAEARALLDEFEAQMDEDVKIEL"
     gene            complement(2017..3210)
                     /gene="sqr"
                     /locus_tag="PF788_002272"
                     /pseudo
     CDS             complement(2017..3210)
                     /gene="sqr"
                     /locus_tag="PF788_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498643.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II sulfide:quinone oxidoreductase Sqr"
     gene            complement(3229..4563)
                     /gene="cstB"
                     /locus_tag="PF788_002273"
     CDS             complement(3229..4563)
                     /gene="cstB"
                     /locus_tag="PF788_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="persulfide dioxygenase-sulfurtransferase CstB"
                     /protein_id="HDG6304518.1"
                     /translation="MFFKQFYDNHLSQASYLVGCQRTGEAIIIDPVRDLSKYIEVADS
                     EGLTITQATETHIHADFASGIRDVAKRLNANIYVSGEGEDALGYKNMPSKTQFVKHGD
                     IIQVGNVKLEVLHTPGHTPESISFLLTDLGGGSSVPMGLFSGDFIFVGDIGRPDLLEK
                     SVQIKGSTEISAKQMYESVQNIKNLPDYVQIWPGHGAGSPCGKALGAIPISTIGYEKI
                     NNWAFNEIDETKFIESLTSNQPAPPHHFAQMKQVNQFGMNLYQSYDVYPSLDNKRVAF
                     DLRSKEAFHGGHTKGTINIPYNKNFINQIGWYLDFEKDIDLIGDKSTVEKAKHTLQLI
                     GFDKVAGYRLPKSGISTQSVHSADMTGKEEHVLDVRNDEEWNNGHLDQAVNIPHGKLL
                     NENIPFNKEDKIYVHCQSGVRSSIAVGILESKGFENVVNIREGYQDFPESLK"
     gene            complement(4594..5661)
                     /gene="cstA"
                     /locus_tag="PF788_002274"
     CDS             complement(4594..5661)
                     /gene="cstA"
                     /locus_tag="PF788_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001837745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="persulfide response sulfurtransferase CstA"
                     /protein_id="HDG6304519.1"
                     /translation="MKQYGEKFIDEFSKAELEKLAKQGQLIDVRTEEEYALGHINGSI
                     LHPVDEIESFNKEKNKTYYVICRSGNRSANASKYLAKQGYNVINLDGGYKAYEEENDS
                     YDTQEEYKSIEIKADRKQFNYRGLQCPGPIVKISQEMKNIEVGDQIEVKVTDPGFPSD
                     IKSWVKQTRHTLVKLDENNNGINAIIQKEKAKDLDINYSAKGTTIVLFSGELDKAVAA
                     LIIANGARAAGKDVTIFFTFWGLNALKKVQTVNVKKQGIAKMFDLMLPKKNIRMPLSK
                     MNMFGLGNMMMRYVMKKKNVDSLPTLINQAIEQNIKLIACTMSMDVMGIQKEELRDEV
                     EYGGVGTYIGATENANHNLFI"
     gene            5798..6058
                     /gene="cstR"
                     /locus_tag="PF788_002275"
     CDS             5798..6058
                     /gene="cstR"
                     /locus_tag="PF788_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="persulfide-sensing transcriptional repressor
                     CstR"
                     /protein_id="HDG6304520.1"
                     /translation="MNYDKKMINRINRIQGQLNGIIKMMEEGKDCKDVITQISASKSS
                     LQRLMGIIISENLIECVKAAADDEESSQELINEAVNLLVKSK"
     gene            6058..6813
                     /locus_tag="PF788_002276"
     CDS             6058..6813
                     /locus_tag="PF788_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDG6304521.1"
                     /translation="MDIVNIVIMLLIGVFGGFISGLVGVGGAIIIYPAILLLPPLFGA
                     PAYSAYIASGLTSSQVFFSTLSGSLKARKKTEFSPQLVLYMGGGMIIGSMLGAFLANL
                     FDATFVNTVYIIIALLALTLMFIKVKPSSEKSSFNKYLLVIIGLFIGIISGIVGAGGA
                     FIIIPILLVLFKLPMNTVVANSIVIAFISSIGAFVIKLIQGYIPLYDALFLIIGSIIF
                     APIGLKLSKKVPNIIQKWIISILIVFAIVQLIL"
BASE COUNT         2204 a         1196 c         1035 g         2433 t
ORIGIN      
        1 caaaaaataa atcccaccaa cctaaacttt ttaaagaatg ctttaaacct tccataatat
       61 cacctttata aatttgtctt tgttataaga taactaaaaa atcgctttac tgtaaaagta
      121 gccaaagaaa attctgaatc atattcataa gtagtgtatc attaataatg aacaatttaa
      181 tactataatc cttgatcttt gtattgatca acttaccaca acatttattt tagactactc
      241 ttagacttcc ctttcaaatg gttgcatcta ttgaaattcc ttttgtataa gttaggcttt
      301 tgtggtaata tcatcatgca taaaaaatcg agatactaat tataaagagg gtataaatat
      361 attatgaaag aaaatttttg gagtgaatta ccacgtccat tttttatttt ggcgccaatg
      421 gaagacgtta cagatatcgt ctttcgacac gttgtaagtg aagcagctag accggatgtg
      481 tttttcactg aatttacaaa tactgaaagc ttttgccacc ctgaaggcat acatagtgtg
      541 cgcggacgct taacttttag tgaagatgaa cagccgatgg tcgctcatat atggggagat
      601 aagccagaac agttccgtga aacgagtatt caattagcta aaatgggctt taaaggcata
      661 gacttaaata tgggatgtcc tgtagcaaat gttgctaaaa agggtaaggg ttccggctta
      721 atcttaagac ctgacgttgc tgccgaaatt attcaagcga ctaaagcagg tgggcttccg
      781 gtaagtgtta aaacacgcct tggctactat gaaatcgatg aatggaaaga ttggttgaag
      841 cacgtcttcg aacaagacat tgccaattta tctattcatc ttcgtacacg taaagaaatg
      901 agtaaagtag atgcacattg ggaattaatc gaagctatta aaaatttacg tgacgaaatt
      961 gcaccaaata cattgttaac aattaacggt gatattcccg atagaaaaac aggacttgaa
     1021 ctggcagaaa aatatggcat tgatggcgtc atgattggta gaggcatttt ccacaatcca
     1081 ttcgcttttg aaaaagaacc acgcgaacac acaagcaagg aactattaga tctattgaga
     1141 ttgcatttat cattgtttaa caaatatgaa aaagatgaaa tacgacaatt caagagcttg
     1201 cgtagattct ttaaaatcta tgtgcgtggc ataagaggcg ctagcgaact tcgacatcaa
     1261 ttgatgaaca cacaatcaat tgcagaagca cgagcactac tcgatgaatt tgaagcccaa
     1321 atggacgaag acgttaaaat tgaattatag tatgagtaat aaagtttatg gatgatattt
     1381 cccaatttaa cacggattga acactttcta cttaggtatt atcttggttt tcctgatagg
     1441 ataactcccg atgatgcctt tttacttatg tcacttatcc ttttggaaat ggtgcaaaat
     1501 taaaaataca tcaggatatc gtttaactca gaaaaaaact ccaatcaaaa aaaatgttta
     1561 caacacatta tgaaattaaa attgctctta gtgttcaaca gacaaagtta ttgaaattac
     1621 tattggaggt acataccaag ctatcatttt gagtacacgt ggtttgaata tctggcaaga
     1681 aatggaaatt ggtaatgtca gtcataaagt cgctaaacgt gctcaaatac cattaattat
     1741 ttttaaataa tttagaggat gaggtataaa cctttaaaaa acagcagtga gatgattttc
     1801 aattagaaaa tatcttactg ctgtttctat tttcataatc attcttattg aatgacttca
     1861 tcgtgatcat ttaaaacagt aacaactttt tcaatcttat actatttaga gctaaaaatt
     1921 cacgacatat aaacacaaca ctgacacgtc atttaaatac ttaatctttt atagtaaaag
     1981 atttttcatt aaaaatttat tgttttctgt actttattat attaatcctt ttagcatgcc
     2041 gtaccaatac attttaggta ataaatcttt cttaaatata tacatacttc tacgttcttt
     2101 ggcctgatta aacggcattg tttctttagt atttttatta taatcaaact ctgcaagtat
     2161 taacctatta tatccagtaa caatagggca tgaagtataa ccatcataat gatgcgttaa
     2221 catttgatta ttcatcactt gcaataaatt attagcgacg ataggtgctt gcttacgaat
     2281 agctgcgcct gtttttgaag taggtacatt tgaagcatca ccaagtgcaa atacattaga
     2341 gtagctttta tgctgtaatg tggttgggtt aacatctacc caaccctcac tatctgaaag
     2401 tgtactttct tttactacat ctaagggacc cataggtggt gttacatgta acatatcata
     2461 acttattgtt tttctatcgt atgctttgat atgttcgaat gtagccactt ttttgtcacc
     2521 gtcgatttca acaaggttat aattataatt gactgttata tttctttctt caacaatcct
     2581 ttctaattct ttattatatt ttcctacgtc aaataaagca tcttttggcg ttgcatatat
     2641 cacattagcg ttagaacgga ttttatgttt cctaaaataa tcttcagcta aatacataat
     2701 tttcataggc gcacctccac actttatagg agtgtttgga tgcgtaaaaa tggcatttcc
     2761 ttgtttaaaa ttagaaattt ggttccaagt ttcgttaaca tagtcaggtg aatagttaga
     2821 gcaaacacca tttttaccta tattttcttt tagtccttta attgaagacc aattaatctg
     2881 taatcctgga gctactacta aaaaatcata ataaacgact gtattatctc ctaaaataac
     2941 gctattattt tcaggttaaa aacttgaaac agcctgtttt atccagttag caccttcagg
     3001 tataacactt tccatatctt tacgagaact tttcaaacta gatacccctg caccaaccaa
     3061 cgtccataat ggttgatagt aatgatggtc tgctggatct ataattgcta ttttctcttt
     3121 taagttttga ttttttctta atagtcttga tgctacggta acacctgctg taccgccacc
     3181 aataataaca atttgataat gcttattcat tttttccaca tccttaaatt attttaatga
     3241 ttctggaaaa tcttgatagc cttctctaat attcaccaca ttttcaaaac ctttgctttc
     3301 caatataccc actgcaattg aacttctaac acctgactga caatgtacat atattttatc
     3361 ctctttatta aaaggaatat tttcatttaa taatttacca tgcggaatat taactgcttg
     3421 atctaagtgt ccattattcc actcttcatc attacgtacg tctaatacat gttcttcttt
     3481 acctgtcata tcagcgctat gaacggactg ggttgaaatg cctgattttg gcaaacgata
     3541 gcctgctacc ttatcaaacc caattaattg taaagtgtgt ttcgctttct caacagtaga
     3601 tttatctcca attaaatcta tatctttttc aaaatctaag taccaaccaa tttgattaat
     3661 aaagtttttg ttgtatggta tattgattgt tccttttgtg tggccaccgt gaaaggcctc
     3721 tttgctacga agatcaaatg ctactctctt attatctaaa ctaggataaa catcatatga
     3781 ttgatataaa ttcataccaa actgattaac ttgtttcatt tgtgcaaaat gatgcggtgg
     3841 tgctggttga tttgatgtta atgattcaat aaatttagtc tcatcaattt cattaaatgc
     3901 ccagttatta attttctcat aacctattgt agatataggt atggcaccta atgctttacc
     3961 acaagggctt ccagcaccat gacccggcca gatttgaaca tagtctggta aatttttaat
     4021 attttgaacg gactcataca tttgtttcgc gctaatttct gtagaaccct ttatttgaac
     4081 agatttttct aataaatcag gtctacctat atcaccaaca aaaataaagt caccactaaa
     4141 taatcccatc ggaacacttg aaccaccacc taaatcagtg agtaaaaagc taatactttc
     4201 aggcgtgtgt cctggagtat gcagaacttc taatttaaca ttgcctactt gaatgatatc
     4261 tccatgttta acaaattgtg tttttgatgg catattttta taccctaatg catcttcacc
     4321 ttcgccagac acatatatat ttgcatttaa gcgtttagcc acatcacgaa ttcctgaagc
     4381 aaaatcagca tgaatatgtg tttctgtagc ttgtgtaatt gttaaacctt cagaatctgc
     4441 aacttctata tatttcgata aatcacgaac agggtctatt attattgcct ctcctgtacg
     4501 ttgacaaccc actaaatatg atgcttgaga taaatgatta tcgtaaaact gtttaaaaaa
     4561 catgataaca actcctttta ttaatagatt taattagata aataaattat gattcgcatt
     4621 ttcagtagca ccaatataag tgcctacacc accgtactca acttcatctc taagttcttc
     4681 tttctgaata cccatgacat ccatactcat cgtacaagcg attaatttga tattttgctc
     4741 aatagcttga ttgataagtg ttggtaatga atcaacattt ttctttttca ttacgtagcg
     4801 catcatcata tttcctaaac caaacatatt cattttggaa agaggcattc gtatattctt
     4861 tttgggcaac attaaatcaa acatttttgc aataccttgc tttttaacat taactgtttg
     4921 cacttttttt aatgcattaa gcccccaaaa agtaaagaag atagttacat cttttccagc
     4981 agctctagca ccatttgcaa taatcaacgc tgctacagct ttgtctaatt ctccactaaa
     5041 taatacaatt gtagtacctt tagcagaata atttatatct aaatcttttg ctttttcttt
     5101 ttgaataatc gcattaattc cattgttatt ttcatcaagc ttaactaaag tatgccttgt
     5161 ttgtttcacc caacttttaa tgtcactagg gaatccaggg tctgtgactt tgacttcaat
     5221 ttggtcacct acttcaatat tcttcatttc ttgactaatt tttacaattg gccctggaca
     5281 ttgaagacca cgatagttaa attgtttacg atctgcttta atttctatac ttttatattc
     5341 ttcttgtgta tcataactat cgttttcttc ttcataagct ttataaccac catcaagatt
     5401 tataacgtta taaccttgtt tagctaaata tttactagca ttagcacttc tgttaccact
     5461 tctacagatt acataatagg ttttattttt ttctttattg aatgactcaa tctcatcaac
     5521 aggatgaagt atggaaccat tgatatgtcc taatgcatac tcctcttctg ttctaacgtc
     5581 aattaattgc ccttgcttgg ctagtttttc caattctgct ttactaaatt catcgataaa
     5641 cttttctccg tattgtttca taataacctc cctaaaaata cctgtagggg tattttaaac
     5701 agttggatgg aacttgtcaa atacctctag gggtatttga cacatttgtg tttatctatt
     5761 aatatatttt tattcaatta aaagtggagg tatgactatg aattatgata aaaaaatgat
     5821 taatcgtatt aatagaatac aagggcaact aaatggaatt attaaaatga tggaggaagg
     5881 aaaagactgt aaagatgtca ttacacaaat aagtgcatca aagagttcac tccaacgctt
     5941 gatgggtatc attattagtg agaatttaat agaatgtgta aaagcagctg cggatgatga
     6001 agaaagctcc caagagttaa ttaatgaagc tgtaaactta ttggtgaaaa gtaagtaatg
     6061 gatattgtta atatagttat catgttactc attggggtat tcggtgggtt catatctggt
     6121 ctagtaggcg taggtggtgc tatcattatt tatccagcta ttttattatt accaccatta
     6181 ttcggagccc ctgcatatag cgcatatatc gcatcaggtc ttacttctag ccaagtcttt
     6241 ttcagtacat taagtggctc attaaaagct cgaaaaaaaa cagagttctc gccacaatta
     6301 gttctttata tgggtggcgg catgattata gggagtatgt taggtgcatt tctagcaaat
     6361 ttatttgatg ctacatttgt aaatacggta tatatcatta ttgctttact tgcattaaca
     6421 ttaatgttta ttaaagtgaa acctagttcc gaaaagtctt catttaataa atatttatta
     6481 gttatcattg gccttttcat tggtattatt tcaggtatag taggtgcagg tggtgccttc
     6541 attattattc ctatattatt ggttttattc aaattaccaa tgaatactgt agtcgctaat
     6601 agtatagtaa ttgcttttat atcttcaatt ggtgcttttg tcatcaaact tattcaaggt
     6661 tatatccctt tatatgacgc cttattcctt ataataggga gtattatatt tgctccaata
     6721 gggttaaaat taagtaaaaa agtccctaac ataatacaaa aatggattat cagtatttta
     6781 atcgtttttg ctatagttca actcatttta taaaactaat ccttttaact cagacagcaa
     6841 tttcccgaaa aataatacct cttattta
//
LOCUS       DAMQWL010000119         6722 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.121, whole genome shotgun sequence.
ACCESSION   DAMQWL010000119 DAMQWL010000000
VERSION     DAMQWL010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6722
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.121"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(66..1031)
                     /locus_tag="PF788_002277"
     CDS             complement(66..1031)
                     /locus_tag="PF788_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HDG6304522.1"
                     /translation="MKKIMITGALGQIGTELVVKCREIYGTDNVLATDIREPEADSPV
                     QNGPFEILDVTDRDRMFELVRDFEADSLMHMAALLSATAEKNPILAWDLNMGGLMNAL
                     EAARTYNLHFFTPSSIGAFGDSTPKVNTPQVTIQQPTTMYGVNKVAGELLCQYYFKRF
                     GVDTRSVRFPGLISHVKEPGGGTTDYAVEIYFKAVREGHYTSFIDKGTYMDMMYMDDA
                     IEAIIKLMEADDAKLETRNGYNLSAMSFDPEMVKEAIQEYYPNFTLDYDVDPIRQGIA
                     NSWPDSIDTSCSRGEWGFDPKYDLASMTKLMLEAIEQKDTVKNNN"
     gene            complement(1245..2882)
                     /locus_tag="PF788_002278"
     CDS             complement(1245..2882)
                     /locus_tag="PF788_002278"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HDG6304523.1"
                     /translation="MSYSIGIDYGTASGRVFLINTTNGQVVSKFVKPYTHGVIESELN
                     GLKIPHTYALQNSNDYLEIMEEGISYIVRESKIDPDNIVGIGIDFTSSTIIFTDENLN
                     PVHNLKQFKNNPHAYVKLWKHHGAYKEAEKLYQTAIENNNKWLGHYGYNVSSEWMIPK
                     IMEVMNRAPEIMEKTAYIMEAGDWIVNKLTNKNVRSNCGLGFKAFWEEETGFHYDLFD
                     KIDPKLSKVIQDKVSAPVVNIGEAVGKLDDKMAQKLGLSKETMVSPFIIDAHASLLGI
                     GSEKDKEMTMVMGTSTCHLMLNEKQHQVPGISGSVKGAIIPELFAYEAGQSAVGDLFE
                     YVAKQAPKSYVDEAENRNMTVFELMNEKIKHQMPGESGLIALDWHNGNRSVLSDSNLT
                     GCIFGLTLQTKHEDIYRAYLEATAFGTKMIMQQYQDWHMEVEKVFACGGIPKKNAVMM
                     DIYANVLNKKLIVMDSEYAPAIGAAILGAVSGGAHNSINDAVDAMKEPILYEINPEAE
                     KVQRYETLFKAYKALHDIHGYKKANIMKDIQSLRVEG"
     gene            complement(3042..3920)
                     /gene="hchA"
                     /locus_tag="PF788_002279"
     CDS             complement(3042..3920)
                     /gene="hchA"
                     /locus_tag="PF788_002279"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase HchA"
                     /protein_id="HDG6304524.1"
                     /translation="MSQDVNELSKQPTPDKAEDNAFFPSPYSLSQYTAPKTDFDGVEH
                     KGAYKDGKWKVLMIAAEERYVLLENGKMFSTGNHPVEMLLPLHHLMEAGFDVDVATLS
                     GYPVKLELWAMPTEDEAVISTYNKLKEKLKQPKKLADVIKNELGPDSDYLSVFIPGGH
                     AAVVGISESEDVQQTLDWALDNDRFIVTLCHGPAALLSAGLNREKSPLEGYSVCVFPD
                     SLDEGANIEIGYLPGRLKWLVADLLTKQGLKVVNDDMTGRTLKDRKLLTGDSPLASNE
                     LGKLAVNEMLNAIQNK"
     gene            complement(4186..5373)
                     /locus_tag="PF788_002280"
     CDS             complement(4186..5373)
                     /locus_tag="PF788_002280"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HDG6304525.1"
                     /translation="MVQSLHEFLEENINYLKENGLYNEIDTIEGANGPEIKINGKSYI
                     NLSSNNYLGLATNEDLKSAAKAAIDTHGVGAGAVRTINGTLDLHDELEETLAKFKGTE
                     AAIAYQSGFNCNMAAISAVMNKNDAILSDELNHASIIDGCRLSKAKIIRVNHSDMDDL
                     RAKAKEAVESGQYNKVMYITDGVFSMDGDVAKLPEIVEIAEEFGLLTYVDDAHGSGVM
                     GKGAGTVKHFGLQDKIDFQIGTLSKAIGVVGGYVAGTKELIDWLKAQSRPFLFSTSLA
                     PGDTKAITEAVKKLMDSTELHDKLWNNAQYLKNGLSKLGYDTGESETPITPVIIGDEK
                     TTQEFSKRLKDEGVYVKSIVFPTVPRGTGRVRNMPTAAHTKDMLDEAIAAYEKVGKEM
                     KLI"
     gene            5544..6719
                     /locus_tag="PF788_002281"
     CDS             5544..6719
                     /locus_tag="PF788_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDG6304526.1"
                     /translation="MLDWFQLANNKENKTIQLRRYLHQYPELSFEEFQTHDYIVNQLS
                     QLSCDIETPIGRNGIKATFKGLGTGPTIALRADFDALPVEELNDVPYKSKNPGCMHAC
                     GHDGHTAILLTVAEILDEHKHLLEGNVVLIFQYGEEIMPGGSQEMIDAGCLENVDRIY
                     GTHLWSGYPTGTIHSRAGAIMASPDEFSVTFKGRGGHGAKPHETIDPIVIMAEFILSA
                     QKIISRTIDPVKQAVLSFGMIQAGTTDSVIPDQAFCKGTVRTFDSDIQNHVMDKMDKL
                     LQGLAIANDINYDLNYIKGYLPVHNNEKAYQVIKEATNDLHVRFNESDLMMIGEDFSH
                     YLKVRPGAFFLTGCGNESKGITAPHHNPKFDIDEKSLKYAVAVFLKIIELEQVFKTN"
BASE COUNT         2098 a         1274 c          954 g         2396 t
ORIGIN      
        1 actagtttat taaaataaag agtaatttaa aatatcattc cgtgtattaa agtgaatgga
       61 aatgattagt tattattttt aacagtatct ttttgttcaa tagcttctaa cattaattta
      121 gtcatgctcg ctaaatcata tttaggatca aatccccatt cgccacgtga acagcttgta
      181 tcaatagaat ccggccaact attagcgata ccttgtctaa taggatcaac atcgtaatct
      241 aatgtaaaat tgggatagta ttcttgaatt gcttctttta ccatctctgg atcaaaactc
      301 attgcgctca aattataacc atttctagtt tctaatttag cgtcgtctgc ttccataagt
      361 ttaataattg cttcaattgc atcatccata tacatcatat ccatatacgt gcctttatct
      421 atgaagcttg tataatgacc ctctcttact gctttgaagt atatttcaac agcatagtct
      481 gtagtaccgc cacctggctc tttaacatgc gagattaaac ctgggaatct aacacttctt
      541 gtatctacac caaaacgttt gaaatagtat tgacacaata attctccagc tactttattt
      601 acaccataca ttgtcgtagg ttgctgaatc gttacttgtg gcgtattaac tttaggagtt
      661 gagtctccaa atgcaccaat tgaacttggt gtgaaaaagt gcaaattata agttcttgca
      721 gcttctaatg cattcattaa tccacccata tttaaatccc aagctagaat tggatttttc
      781 tcagcagttg ctgataataa tgctgccata tgcattagac tatccgcttc aaagtcccta
      841 actaactcaa acatacggtc acgatctgtt acgtctaaga tttcaaatgg tccattttgt
      901 acaggtgagt ctgcttcagg ttccctaata tctgtagcaa gaacattatc tgtcccataa
      961 atttctctgc acttaacaac taattctgta ccaatttgtc ctaatgcacc agtaatcata
     1021 atttttttca tagaaatatc tcctttgtct cttctatata gctatagtcc atcacaagcg
     1081 gacataatat tcattttcat aataattata atataaaagc gctttcttgt atatatgaca
     1141 tgtacatgtt gctgatattt ctgtaaatgg aaattctagt tgtattaatt gattttagta
     1201 atttatagcg tttattattg ctaattactg tcaaattaaa ttttttatcc ctcaactctt
     1261 aaactctgga tatctttcat tatattagct tttttataac catggatatc atgtaaagcc
     1321 ttataagctt taaataatgt ttcatacctt tgtacttttt ccgcttctgg attaatttcg
     1381 tataaaattg gctctttcat agcatcaact gcgtcattaa ttgaattatg tgcgccacca
     1441 ctgactgcac ctaatattgc tgcgcctatt gctggtgcat actcactatc cataacaatt
     1501 agttttttat tcagtacatt cgcatagata tccatcataa cagcattctt tttaggtata
     1561 ccgccacatg caaatacctt ttctacttcc atatgccaat cttgatactg ttgcataatc
     1621 atcttagtac caaatgctgt agcttctaaa tatgctctat aaatatcctc atgcttagtt
     1681 tgtaaagtta atccaaagat acaacctgtt aaattgctat cacttaatac acttcgattt
     1741 ccattatgcc aatcaagagc aatgagccca ctttcacctg gcatttgatg ttttatcttt
     1801 tcattcatta attcaaatac agtcatattt ctattttctg cttcatctac atatgacttt
     1861 ggtgcttgct tagcgacata ctcaaacaaa tcacctactg ctgattgccc cgcttcataa
     1921 gcaaataatt ctggaataat tgctcctttt acagaacctg atatacctgg cacttgatgt
     1981 tgcttttcat ttaacataag atggcatgtg cttgttccca tcaccatagt catttcttta
     2041 tctttttcag acccaatacc taataaacta gcatgggcat caataataaa aggacttacc
     2101 atagtttctt ttgataatcc taatttctgt gccattttat catccagttt ccctactgct
     2161 tcaccaatat taacaaccgg tgcagatact ttatcttgaa ttacttttga taatttgggg
     2221 tctattttat caaataaatc ataatgaaac cctgtttctt cttcccaaaa tgctttgaaa
     2281 cctaatccac aattcgagcg tacattttta ttagttaatt tatttacaat ccaatcgccc
     2341 gcttccataa tataagccgt tttttccata atttctggtg ctcgattcat gacctccatt
     2401 attttgggaa tcatccattc actactaaca ttatatccat aatggcctaa ccacttatta
     2461 ttattttcaa tagcagtttg atataatttc tctgcctctt tatatgcacc atgatgtttc
     2521 caaagtttca catacgcatg tggattgttt ttaaattgtt ttaagttatg taccgggtta
     2581 aggttttcgt cagtaaaaat aatagtagat gaagtaaagt ctataccaat acctactata
     2641 ttgtctggat ctatttttga ttcacgtact atatatgata ttccttcttc cataatttct
     2701 aaataatcat tactattttg aagtgcatat gtatgtggta ttttcaaacc atttaattca
     2761 ctctcaatga caccatgtgt atatggtttc acaaattttg atactacttg accgttagtt
     2821 gtattaatta aaaacacacg gcctgaagca gttccataat caattccaat gctataagac
     2881 atcatgtttc ctccatatcg ctagttgcgg ttattagttt tgcaagcgtt ttcttaaatc
     2941 atactcataa taggttctat tttacaagta tcacttaaat tttgccaaaa aaaaagagcc
     3001 ctcatacatt tacatatgag gctcctctaa ttaatattta attatttatt ttgtattgca
     3061 tttaacattt cattaactgc taattttcct aactcatttg aagctaaagg actgtcacct
     3121 gttaataatt tacgatcttt taacgttctt cctgtcatat cgtcgttaac tacttttaat
     3181 ccttgtttag ttaataaatc agcaactaac catttcaagc gtccaggtaa ataacctatt
     3241 tcaatatttg caccttcatc taatgagtca gggaagacac aaacagagta tccttctaat
     3301 ggagattttt ctctgttaag ccctgctgaa agtagtgctg ctggtccatg acataatgta
     3361 actataaagc ggtcattgtc taatgcccaa tctaatgttt gttgaacgtc ctcactttca
     3421 gaaataccaa caactgcagc atgtccgcct gggataaaga cagataaata gtctgaatca
     3481 ggtcctaatt catttttaat cacatctgct aatttttttg gctgttttaa tttttctttc
     3541 aatttattat aagtacttat aactgcctcg tcttcagttg gcatagccca taattctaat
     3601 ttaactggat aaccagataa tgtcgcaaca tcaacgtcaa aacctgcttc cattaaatga
     3661 tgtaaaggta ataacatttc aacaggatga ttacccgtag agaacatttt tccattttcc
     3721 aataatacat atcgctcttc agcagcaatc atcaatactt tccatttacc atctttatag
     3781 gcacctttgt gttcaacacc atcaaaatct gttttaggtg ctgtatattg actaagggaa
     3841 tatggtgatg ggaaaaatgc gttatcttct gctttatctg gcgttggttg cttacttaat
     3901 tcatttacat cttgtgacat agtttattcc tactttctct atatagttac tactagtata
     3961 gacatatact acacactata aacatgtatt actattaaaa tgctcattat caaaaataat
     4021 caaaatgaat ttctttgaaa aaaatacaac taaattctac aagatgcttt taaaattcaa
     4081 acttcaattt tggggagcac taaacattga tatacgaact tactgttaat aaactaaaca
     4141 ttaaaaaaag cccacgacaa tatttgccgt gggaataaat aaatattaaa tcaacttcat
     4201 ttcttttcct actttttcat aagccgcaat tgcttcatct aacatgtctt ttgtatgtgc
     4261 agctgtaggc atatttctta cacgtcctgt acctcttggt actgttggga aaacgataga
     4321 tttcacatag acaccttcgt cttttaaacg cttactaaat tcttgagttg ttttttcatc
     4381 accaataatt actggtgtaa ttggagtttc tgactcacct gtatcatatc ctaattttga
     4441 caatccattt tttaaatatt gtgcattgtt ccataattta tcatgtaatt cagttgaatc
     4501 cattaacttt ttaactgctt cagttattgc tttggtatcc ccaggtgcta atgatgtaga
     4561 gaataagaat ggtcgtgatt gtgcttttaa ccaatctatt aactcttttg tacctgctac
     4621 ataaccgcca acgacaccaa ttgctttaga aagcgtacct atttggaaat cgattttatc
     4681 ttgtaaacca aaatgtttaa ccgtaccagc gcctttaccc ataacacctg aaccatgagc
     4741 gtcgtcaaca taagttaata aaccaaattc ttctgcaatt tctacaattt caggtaattt
     4801 agccacatca ccatccatac taaaaacgcc atcagtgata tacatcactt tattgtattg
     4861 acctgattca actgcttctt ttgctttcgc acgtaaatca tccatgtctg aatggttaac
     4921 tcgaataatt ttagctttag ataagcgaca tccatcaata attgatgcat gattaagctc
     4981 atctgataaa atagcatcat ttttattcat gacagctgaa atagcagcca tattacaatt
     5041 aaatcctgat tgataagcta ttgcagcttc tgttccttta aattttgcta gtgtttcttc
     5101 taattcgtcg tgtaaatcta atgtaccatt gattgtacga acagcgcctg cacctacacc
     5161 atgtgtatca atagctgctt ttgcagctga tttcaaatct tcatttgttg ctagtcctaa
     5221 ataattattt gaagataagt taatgtatga tttcccattg attttgattt ctggtccgtt
     5281 tgcaccttca attgtatcta tttcattata caaaccattt tcttttagat aatttatatt
     5341 ttcctctaaa aactcatgta atgattgaac cacagtatat aatccccctt aagtattgtt
     5401 tggtaatacc tttatcatac agtaattcta cataacttga aagccttatc attcatagat
     5461 aaaatatctc aaagcaatca tttagtacga taatttcata aaatgttata ctataaacat
     5521 tattttagaa agtagtgata agggtgttag attggttcca actagcaaat aataaagaaa
     5581 ataaaacaat tcaactcaga cgttatttac accaatatcc tgagttatct tttgaagaat
     5641 ttcaaacaca tgattatatt gttaaccaat taagccagtt atcttgtgat attgaaactc
     5701 ctatcggccg caatggtatc aaagccacat ttaaaggctt gggcacagga cctaccattg
     5761 cattaagagc tgactttgat gcgttacctg tcgaggaatt aaacgatgtg ccttataagt
     5821 ctaaaaatcc aggatgtatg catgcgtgtg ggcatgatgg tcatacagca attttactta
     5881 ctgtagcaga gattttagat gaacataaac atttattaga aggtaatgtt gtattaatat
     5941 tccagtacgg tgaagaaatc atgccaggtg gttctcaaga aatgatagat gctggatgtc
     6001 tggaaaatgt agatagaatt tacggtacac atttatggag tggttatcct actggaacta
     6061 ttcattcacg tgcgggggca atcatggcct ctccagatga atttagcgtc acatttaaag
     6121 gtcgtggtgg tcatggtgcc aaacctcatg aaaccattga cccaatagta atcatggcag
     6181 agttcatttt aagtgcacaa aaaataattt cacgtacgat cgatccagtt aaacaagctg
     6241 tactttcatt tggaatgatt caagcaggca ccacagatag cgttattcct gatcaagcat
     6301 tttgtaaagg tacagttaga actttcgatt cagatataca gaatcatgta atggacaaaa
     6361 tggataagct tctacaaggt ttagcaatag caaatgatat taactatgat ttgaattata
     6421 ttaaagggta tttgcctgtc cataataacg agaaagcata tcaagttatt aaagaagcaa
     6481 caaatgactt acatgtacgc tttaatgaat cagatttaat gatgattgga gaagattttt
     6541 cacattattt gaaagtacga ccaggtgcat tctttctgac tggttgtggt aatgaaagta
     6601 aaggtattac agcgccacac cataatccca aatttgatat tgatgaaaaa tcattaaaat
     6661 acgctgtagc tgtattttta aaaatcatag aattagagca agtatttaaa acaaattaag
     6721 ca
//
LOCUS       DAMQWL010000120         6662 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.122, whole genome shotgun sequence.
ACCESSION   DAMQWL010000120 DAMQWL010000000
VERSION     DAMQWL010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6662
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.122"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            158..1660
                     /locus_tag="PF788_002282"
     CDS             158..1660
                     /locus_tag="PF788_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HDG6304527.1"
                     /translation="MRVAIIGMGTAGVSVLRELVKHPKFNQLDIDLYDDKVNMGQGVP
                     FQNDSSELLINMPSKKMSLNLDDETEFWKWYKQQTDFNFDEPAYLPRFVFGHYMKSYL
                     SMFTKKYPNISTNYNKVQEIYTNSNIDETNLTYYICTTNSGQSWQAYDYVFLTCGTFA
                     YHDPYNLKGKKGYIATPYPTYNTLDEVNELDDIAIIGTGLASLDVVRYVAAHHPKLPI
                     TMTSRSAHLPSVRGTMIDVTFKYLTKDKLNDIKKHHFGNAPLDTLVSLFLKECADYDI
                     DFKKLVHRRTGNHIADLKYDLARPTEMGIFQSMIEHLKENLNWIWNSLSIEDQHQFNQ
                     KYSKMIQLNSNPMPPRTAELIIELIENKSLILKKDLEDVKHDGKLYYFSYKNQESVDI
                     YNVVINATGAKSHLNELDQDDQLIRNLENRQIVQAHPMGGIQIIPETNQVISPRFGTL
                     TNMIAIGQMTNGVNKLRNGVKMIVEQVAHTVSQLYDALESNEQQQRSDNQ"
     regulatory      1879..2014
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            2141..3184
                     /gene="ribD"
                     /locus_tag="PF788_002283"
     CDS             2141..3184
                     /gene="ribD"
                     /locus_tag="PF788_002283"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015581873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDG6304528.1"
                     /translation="MSQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRK
                     GDKHAEVQALDMAQQNAEGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS
                     LDTHGDETLRAHGIEVECVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDN
                     GQSQWITNKEVKQDVYKLRHRHDAVLTGRRTVELDDPQYTTRIQDGKNPIKVILSKSG
                     NIHFNQQIYQDESTPIWIYTENPNLTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLL
                     VEAGPTTTSEFLQSNYIDEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSE
                     LLNQNVKLTLRKK"
     gene            3191..3823
                     /locus_tag="PF788_002284"
     CDS             3191..3823
                     /locus_tag="PF788_002284"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDG6304529.1"
                     /translation="MFTGIVEEIGVVKSVQIRQSVRTIEIEAHKITADMHIGDSISVN
                     GACLTVIDFNQTSFTVQVIKGTENKTYLADVKRQSEVNLERAMSGNGRFGGHFVLGHV
                     DELGTVSKINETANAKIITIQCSQHINNQLVKQGSITVDGVSLTVFDKHDNSFDIHLI
                     PETRRSTILSSKKLGDKVHLETDVLFKYVENILNKDKDQLSVDKLRAFGF"
     gene            3834..5015
                     /gene="ribB"
                     /locus_tag="PF788_002285"
     CDS             3834..5015
                     /gene="ribB"
                     /locus_tag="PF788_002285"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HDG6304530.1"
                     /translation="MQFDNIDSALMALKNGEPIIVVDDENRENEGDLVAVTEWMNDNT
                     INFMAKEARGLICAPVSKDIAQRLDLVQMVDDNSDIFGTQFTVSIDHVDTTTGISAYE
                     RTLTAKKLIDPSSEAKDFNRPGHLFPLVAQDKGVLARNGHTEAAVDLAKLTGAKPAGV
                     ICEIMNDDGTMAKGQDLQKFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFG
                     TFDMYGFKATYTDEEIVVLTKGAIRQHENVRLHSACLTGDIFHSQRCDCGAQLESSMK
                     YINEHGGMIIYLPQEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQ
                     ILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERIEVIVPETVHNHDYMETKKIKMGHL
                     I"
     gene            5028..5492
                     /locus_tag="PF788_002286"
     CDS             5028..5492
                     /locus_tag="PF788_002286"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDG6304531.1"
                     /translation="MNFEGKLIGKDLKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNE
                     DNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHYDYVCNEVAKGVSKV
                     NDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLKSIKA"
     gene            complement(5614..6615)
                     /locus_tag="PF788_002287"
     CDS             complement(5614..6615)
                     /locus_tag="PF788_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase"
                     /protein_id="HDG6304532.1"
                     /translation="MALLKNFFIGLSNNSFLNNAAKKVGPRLGANKVVTGNTIPELIN
                     TIEYLNDKNIAVTVDNLGEFVGTVEESNHAKEQILTIMDALHQHGVKAHMSVKLSQLG
                     AEFDLELAYQNLREILLKANTYNNMHINIDTEKYASLQQIVQVLDRLKGEFRNVGTVI
                     QAYLYDSHELVDKYQDLRLRLVKGAYKENESIAFQSKEDVDANYIKIIEQRLLNARNF
                     TSIATHDHRIINHVKQFMKENHIEKDRMEFQMLYGFRSELAEEIANEGYNFTIYVPYG
                     DDWFAYFMRRLAERPQNLSLAVKEFVKPAGLKRVGIIAALGATVMLGLSTIKKLCRK"
BASE COUNT         2363 a          952 c         1235 g         2112 t
ORIGIN      
        1 taaggttgat attaaatgaa aagttttaaa tggtttaatg gttgtgaaag tgaaataata
       61 gcttacctta ataaatttta ttggaaatac caaattgcta taattatagg taatagttta
      121 aatataatat tttgaattac aaaaggatgg atgatatatg cgtgtagcaa taataggcat
      181 gggaactgct ggtgtaagtg tattgagaga gttagttaag cacccgaagt ttaatcaatt
      241 agatatagat ttatacgatg ataaagtaaa tatgggacag ggcgtaccat ttcaaaatga
      301 tagttctgag ctgctaatta atatgccttc gaaaaagatg agtttaaatt tagatgatga
      361 gactgaattt tggaagtggt ataaacaaca aactgatttt aattttgatg aacctgcata
      421 tttaccgaga tttgtattcg gacattatat gaaatcttat ttatctatgt tcacgaaaaa
      481 atatccaaat atatcaacta attataataa agttcaagag atttatacaa attctaatat
      541 cgatgaaacg aatttaactt attacatatg tactacaaat tcaggacaat catggcaagc
      601 gtacgattat gtatttttaa catgtggtac atttgcctac catgatccat ataacttaaa
      661 gggtaaaaaa ggatatatcg ctacgcctta tccaacatat aatacgttag acgaagtaaa
      721 tgaactggac gatattgcga ttattggtac aggccttgcc agtttagatg ttgtccgtta
      781 tgttgctgct catcatccaa aattaccaat tactatgacg agtcgttctg ctcatttacc
      841 aagtgtaaga ggtacaatga tagacgtgac attcaagtac ttaactaaag acaaattaaa
      901 tgacattaaa aaacatcatt tcggcaatgc accgcttgat actttagttt ctttattttt
      961 aaaagaatgt gctgattatg acattgattt taaaaaatta gtacatagac gtacaggaaa
     1021 tcatattgca gatttgaagt atgatttagc gcgtccaaca gaaatgggca ttttccaaag
     1081 tatgattgaa catttgaaag agaatttaaa ttggatatgg aatagcttaa gtattgaaga
     1141 ccaacatcaa tttaatcaaa aatactcaaa gatgattcaa ttaaattcaa atccaatgcc
     1201 tccaagaact gctgaactaa ttattgaatt aatagaaaat aagtctttaa ttttgaaaaa
     1261 agatttagaa gatgtgaaac atgatggcaa gttgtattat ttttcataca aaaaccaaga
     1321 atcagtagac atatataatg ttgtcattaa cgcgacaggt gcaaaaagtc atttaaatga
     1381 attggatcaa gatgatcaat taattagaaa tcttgaaaat agacaaattg tacaagcaca
     1441 cccaatggga ggcatacaaa tcattccgga aaccaatcaa gttattagtc caaggtttgg
     1501 aacattaaca aatatgattg cgataggtca aatgacaaac ggtgttaata aactacgaaa
     1561 cggtgtgaaa atgattgtag aacaagttgc gcatacagta tctcaattat atgatgcttt
     1621 agaatcgaat gagcaacaac agcgcagtga caatcaataa tttgtaacta gaagataata
     1681 aagagaacgc tctatagaga cgaattgaag gtttgatttt aatgtctgtt agtaagaatc
     1741 atatcaatga gatgcctata gtactcagat tatattaaat taaaaccgtc attaattgtt
     1801 ttttcagaaa acatatagta tcattttaaa tgtagttgac atactacgta ctcaaataat
     1861 ctataacaat ttcatatata attctttcgg ggcagggtga aattcccaac cggcagtaaa
     1921 taaagcctgc gacctgctaa tatgtttcat attagtggct gatctagtga gattctagag
     1981 ccgacagtta aagtctggat gggagaaaga atgttaatta tcgacaaaga taatgtagcg
     2041 tatttgtaaa aatgtgtaca aataggctta tttaacgata aatttttctc cttgcatctt
     2101 aattcatgat gtgaggattt ttgtttatag aggtgatcat ttgagtcaat ttatggatta
     2161 tgcgattcaa cttgcaaata tggtacaagg tcaaacaggt gttaatccac ccgttggcgc
     2221 tgttgtagtt aaagaaggta ggattgttgg tattggtgca cacttgagaa aaggtgacaa
     2281 gcatgcggag gttcaagcac ttgatatggc acaacaaaat gctgaaggtg cgacgattta
     2341 tattacgtta gagccatgta gtcattttgg ttcaacacca ccctgtgtta acaaaataat
     2401 tgattgtaag atagcaaaag tagtatacgc aacaaaagac aattcgttag acacacatgg
     2461 tgatgagacg ttacgggctc acggtattga ggttgaatgc gttgatgatg aacgggcatc
     2521 acaattatac caagactttt ttaaagcaaa agcaaagcaa ctgccacaaa ttacagtgaa
     2581 agtatctgca agtttagatg gtaaacaagc gaatgataat ggacaaagtc aatggattac
     2641 taacaaagag gttaaacaag atgtctataa gttaagacat cgacacgacg cagtgttaac
     2701 tggaagacgt acagttgaat tagatgatcc acaatatact acacgtattc aagatggaaa
     2761 aaaccctata aaagtaatat tgtctaagtc tgggaatatt cattttaatc agcaaattta
     2821 tcaagatgaa tcaacaccaa tttggatata tactgaaaat ccaaatttaa caaccaatca
     2881 aacacatatt gaaattattt acttgaagtc ttgcgattta acaacaattc ttcacaattt
     2941 atataaaaga ggagttggaa ctttgctagt tgaggcaggt ccaaccacta cttcagaatt
     3001 tctccaatct aattatatag atgaatttat tctctattat gccccgaaat taattggcgg
     3061 atctggaaat tatcaatttt atcaaacaaa tgatgtgatt gagataccag atgcgaacca
     3121 atttgaaatt gttcattccg agttattaaa tcaaaatgtt aaattaactt tacgaaagaa
     3181 gtgatgatgc atgtttactg gcatcgttga agaaataggt gtcgttaaaa gtgttcaaat
     3241 tcgtcaatca gtcaggacga ttgaaattga agcacataag attacggcag atatgcatat
     3301 tggtgattcc atcagtgtta atggtgcatg tttaacagtg attgatttta atcagacatc
     3361 ttttactgtt caagtaatta aaggcactga aaataaaacc tatttagcag atgttaagcg
     3421 acaatcagaa gtaaatttag agcgtgccat gagtggtaac ggtaggtttg gtggacattt
     3481 tgtcctcggt catgtagatg aactaggaac agtttcaaaa ataaatgaaa cagccaatgc
     3541 aaaaattatt acgattcaat gtagccaaca tattaataat cagttagtta agcaagggtc
     3601 tattactgtg gatggtgtta gtctaacggt atttgataag catgataaca gttttgacat
     3661 tcatcttatt ccagaaacga ggcgttcaac gattttatca tccaaaaaat taggagataa
     3721 agtacattta gaaacagacg ttttgtttaa atatgttgaa aatattttaa ataaagataa
     3781 agaccaatta tctgtagata aattaagagc atttggtttt taggaggggt agcatgcaat
     3841 tcgataatat tgacagtgct ttaatggctt taaaaaatgg agaaccaatt attgtagtag
     3901 atgatgagaa tcgtgaaaat gaaggtgatt tagtagcggt tactgaatgg atgaacgata
     3961 ataccattaa ttttatggcg aaagaagcaa ggggattaat atgcgcacca gtgtctaaag
     4021 atattgcaca acgtttggat ttggtacaaa tggttgatga taactccgac atctttggta
     4081 cgcaatttac agtgagtatt gatcatgtag atacaacaac aggaattagt gcttatgaac
     4141 gtacattgac tgccaaaaag ctcattgatc ctagtagtga agctaaagat tttaatcgtc
     4201 ctggtcattt atttccatta gtagcacaag ataaaggcgt attagctaga aatggacaca
     4261 cagaagcggc tgttgattta gctaaactta ctggtgccaa gcccgctggt gtcatttgtg
     4321 agattatgaa tgatgacggc acgatggcga aaggacaaga tttacaaaag tttaaagaaa
     4381 aacatcaatt aaagatgatt acgattgatg atttaattga atatcgtaaa aaattagaac
     4441 cagaaattga atttaaggca aaagtgaaaa tgcctacaga tttcggaaca tttgatatgt
     4501 atggttttaa agcgacatac acagatgaag agatagttgt actgacaaaa ggtgcaattc
     4561 gacaacatga aaatgtacgc ttacattctg cgtgccttac aggcgatatt ttccatagtc
     4621 aacgttgtga ttgtggtgct caacttgaat cgtctatgaa gtatatcaat gaacatggtg
     4681 gcatgattat ttatctacct caagaaggtc gtggcatagg attgttaaac aaattacgcg
     4741 catatgaatt aattgagcaa ggatatgata cagtaactgc aaatttagca ttaggttttg
     4801 atgaagattt gcgagattat catattgctg cacagatttt aaaatatttt aacatcgaac
     4861 atatcaattt attaagtaat aatccaagta aatttgaggg attaaaacaa tatggcattg
     4921 atattgcaga aagaattgaa gttatcgtac cagaaacggt acataatcat gattatatgg
     4981 aaacgaaaaa aataaaaatg ggtcatttaa tataggagga ttttaacatg aattttgaag
     5041 gtaaattaat tggaaaagat ttgaaagttg caatcgtagt tagtcgattt aatgatttta
     5101 tcactggaag attacttgaa ggtgcaaaag atactttgat tcgacatgat gttaatgaag
     5161 acaatattga tgtagcattt gtgccaggtg cgtttgaaat tcctttagta gctaaaaaat
     5221 tagcctcatc aggaaattat gatgcagtaa ttacattagg atgcgtaatt cgcggtgcta
     5281 cgtctcatta tgattatgtt tgtaatgaag tcgcgaaagg tgtttctaaa gtgaatgatc
     5341 aaactaatgt accagtcata tttggtattt taacgactga aagtattgaa caagctgtgg
     5401 aaagagcagg tacgaaagct ggcaataaag gtgctgaagc agcagtaagt gcaattgaaa
     5461 tggctaattt attaaaatct ataaaagcat agagcactgt tgtgagttca taatcaaaga
     5521 tttataaatg tttcagaact gccaatataa catttaggag cctagaacat tgattattgt
     5581 tccagactcc taaattattg tttatgtctt gctctattta cggcataatt ttttaattgt
     5641 acttaaacct aacataactg tagctcctaa agctgcaatt atgccaacac gttttaagcc
     5701 agcaggtttc acaaattctt ttacagcaag agataggttt tgtgggcgtt ctgctaatct
     5761 tctcataaaa tacgcaaacc aatcatcgcc ataaggtaca taaatagtga aattatagcc
     5821 ttcatttgcg atttcttctg ctaactctga tctaaaacca tagagcattt ggaattccat
     5881 acgatctttt tcaatgtgat tttctttcat aaattgtttt acatgattaa tgatgcgatg
     5941 gtcatgtgtt gcaattgaag tgaaattgcg tgcgtttaac aaacgttgtt caattatttt
     6001 gatgtaattt gcatctacgt cttccttaga ttgaaatgca attgattcgt tttctttata
     6061 tgcaccttta accaaacgta atcgtaaatc ttggtactta tcaactaatt cgtggctatc
     6121 gtataaatat gcttgaatta cagtaccaac atttctaaat tcgcctttta agcgatctaa
     6181 aacttgaaca atttgttgca ggctagcata tttttcagta tcaatattta tatgcatatt
     6241 gttgtaagta tttgctttaa gtaaaatctc tcttaaattt tggtaagcta attctaagtc
     6301 gaattctgca cctaactgac tcaatttaac agacatatgt gcctttacgc catgttgatg
     6361 aagcgcgtcc ataattgtta aaatttgttc tttagcatga ttactttctt caactgtacc
     6421 gacaaattcc cctaaattgt ctaccgtaac agcgatattc ttgtcattta agtattcgat
     6481 tgtattaatt aactctggaa ttgtatttcc ggtaacgact ttattggcgc ccaaacgtgg
     6541 gcccactttt tttgctgcgt tgtttaaaaa actattatta gataatccga taaaaaaatt
     6601 ctttaatagt gccattgcta ctcctccaaa cccttgtgtt tacaataagt ttagcatgaa
     6661 aa
//
LOCUS       DAMQWL010000121         6656 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.123, whole genome shotgun sequence.
ACCESSION   DAMQWL010000121 DAMQWL010000000
VERSION     DAMQWL010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6656
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.123"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            61..1050
                     /gene="trpS"
                     /locus_tag="PF788_002288"
     CDS             61..1050
                     /gene="trpS"
                     /locus_tag="PF788_002288"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDG6304533.1"
                     /translation="METLFSGIQPSGIPTIGNYIGALKQFVDVQNDYDCYFCIVDQHA
                     ITMPQDRLKLRKQTRQLAAIYLASGIDPDKATLFIQSEVPAHVQAGWMLTTIASVGEL
                     ERMTQYKDKAQKAVEGIPAGLLTYPPLMAADIVLYNTNIVPVGDDQKQHIELTRNLVD
                     RFNSRYNDVLVKPEIRMPKVGGRVMSLQDPTRKMSKSDDNAKNFISLLDEPNVAAKKI
                     KSAVTDSDGIIKFDRDNKPGITNLISIYAGLTDMPIKDIEAKYEGEGYGKFKGDLAEI
                     VKAFLVEFQEKYESFYNSDKLDDILDQGRDKAHKVSFKTVKKMEKAMGLGRKR"
     gene            complement(1092..1973)
                     /locus_tag="PF788_002289"
     CDS             complement(1092..1973)
                     /locus_tag="PF788_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304534.1"
                     /translation="MQNKSKSPFKIAFSKFIHNKIAMLSVIFLLIITIVSIIAPLIAP
                     FPVNQQDLLNIKGEMTAQNILGTDSGGRDNFSRLLYAGRISLSIGITSTIGMLLIGIT
                     VGVISGYFGGIVDTLLMRITEFVMLFPFLIFAIVLNAALGDKIKNPYGSAIILVLVII
                     VLSWGGIARLVRGKVLQEKENEYFLAAKSIGTPTYKIILKHLLPNILSVVIVQATLLF
                     AGMIVVESGLSFLGFGISKAIPSWGNMLSDAQEGDVISGKPWIWMPPAIMITLTILSI
                     NFVGEGIKDAFNPRGRR"
     gene            complement(1985..2947)
                     /locus_tag="PF788_002290"
     CDS             complement(1985..2947)
                     /locus_tag="PF788_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304535.1"
                     /translation="MIKLILKRLGLMIPLLILISIVVFSLAIIQPGDPFSDLQNGKIK
                     QEAINAQREKLGLNDSIPHQYIRWVNHVIHGDLGESIKYKRPVIDVIEERIPNTILLG
                     AMSLIITYIISFALGITSGRYSYSLTDYTVQIFNYLMLAIPSFIAGVFAIFIFSFELQ
                     WFPFQGSVDINLKEGTFEYYMSKIYHTFLPAFTLGLLSTAGYIQYLRNDIIENSKKDY
                     VLTARSKGLSMNKIYNKHILRNSLIPIITFLGADIVSILGGAVITETIFSYNGIGKLF
                     LESVIGQDYPLMMALTLFFSFLGLLGNLISDITYGFIDPRIRSN"
     gene            complement(2940..3920)
                     /locus_tag="PF788_002291"
     CDS             complement(2940..3920)
                     /locus_tag="PF788_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDG6304536.1"
                     /translation="MENILEVNQIKKYYKIKTGLLQKTQYVKAVDDVSFSIKKGQTFG
                     LVGESGCGKSTLGKVIIRLEDATSGSIIVNGEDITRLQGKKLRKSRQQYQMIFQDPYA
                     SLNPMQMVGDIISEPILNYKKLPKEEIKKEVLYLLKCVGLSEDAYYKYAHEFSGGQRQ
                     RVGIARALALRPSLIVADEPVSALDVSVQSQVLNLLKDLQEQFNLSYLFIAHDLSVVK
                     HISDVIGVMYLGHIVEIASDKEIYENPKHPYTKALISSIPQIDKHNNNRIILKGELPS
                     PSNPPQGCPFHTRCPIAQDMCKKSMPELKDIGNEHQVACFYVDKVGDLND"
     gene            complement(3923..4909)
                     /locus_tag="PF788_002292"
     CDS             complement(3923..4909)
                     /locus_tag="PF788_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6304537.1"
                     /translation="MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGES
                     GCGKSILSKSIIKLLPEKISKLSNGEVIFDGKRIDTLNEKQLPDIRGNDIAMIFQEPM
                     TALNPVFTIKNQLVESIKSHKKISKKEANKLAKDLLKKVGIARQDEILNSYPHQLSGG
                     MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLS
                     VVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGI
                     VPSIQAFHVNKCRFANRCNKKLDICNNQSPKMHVCEDVIVRCHLYKNEYKEI"
     gene            complement(4960..6654)
                     /locus_tag="PF788_002293"
     CDS             complement(4960..6654)
                     /locus_tag="PF788_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000516218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6304538.1"
                     /translation="MSILLIVVLVLSACGKSSNKDEGVKDATKTETSKHKGGTLNVAL
                     TAPPSGVYSSLLNSTHADSVVEGYFNESLLATDKKIRPKAYIASWKDIEPAKKIEFKI
                     KKGIKWHDGNELKIDDWIYSIEVLANKDYEGAYYPSVENIQGAKDYHEGKTDHISGLK
                     KIDDYTMQVTFDKKQENYLTGFITGPLLSKKYLSDVPIKDLAKSDKIRKYPIGIGPYK
                     VKKIVPGEAVQLVKFDDYWQGKPALDKINLKVIDQAQIIKAMEKGDIDVANDATGAMA
                     KDAKSSNAGLKVLSAPSLDYGLIGFVSHDYDKKANKTGKVRPKYEDKELRKAMLYAID
                     REKWIKAFFNGYASEINSFVPSMHWIAANPKDLNDYKYDPEKAKKILDKLGYKDRDGD
                     GFREDPKGNKFEINFKHYSGSNPTFEPRTAAIKDFWEKVGLKTNVKLVEFGKYNEDLA
                     NASKDMEVYFRSWAGGTDPDPSDLYHTDRPQNEMRTVLPKSDQYLDDALDFEKVGIDE
                     KKRKDIYVKWQKYMNDELPGLPMFQGKSITIVNDKVRNLDIEIGTDQSLYNLTKEA"
BASE COUNT         2169 a         1174 c          920 g         2393 t
ORIGIN      
        1 tttaagaaat actgttataa tgataattat taaaatatta ctaagaaagt aggcatttaa
       61 atggagacat tattttcagg catccaacct agtggaattc ctactattgg aaattatatt
      121 ggcgcactaa aacaatttgt tgatgtgcaa aatgactatg attgttattt ctgtatcgta
      181 gatcaacatg caattacaat gccacaagat cgtttaaaat tacgtaaaca gaccagacaa
      241 ttagcagcga tttatttagc ttctggtata gatccagaca aagcaacatt gttcatacaa
      301 tctgaagtcc ctgcacacgt acaagcagga tggatgttaa ctacgattgc ttctgttgga
      361 gaattagagc gtatgacgca atacaaagat aaagctcaga aagcagttga aggtatacct
      421 gctggtctat taacatatcc acctttaatg gcagctgata ttgttcttta caatactaat
      481 atcgttccag ttggagatga ccaaaagcag catatcgaat tgactcgtaa ccttgtagat
      541 agatttaata gtcgctataa tgatgtgctt gtgaaacctg aaattcgtat gcctaaagtt
      601 ggtggacgtg tcatgagttt acaagaccca acaagaaaaa tgagtaagag tgatgataat
      661 gctaaaaact tcatttcatt attagacgag ccgaatgttg cagctaaaaa aattaaaagc
      721 gcagtaactg attcagatgg tattattaaa tttgatcgtg acaacaagcc aggtataaca
      781 aatttaattt caatatacgc tggattaaca gacatgccaa ttaaagatat tgaggcaaaa
      841 tatgagggcg aaggttatgg taaatttaaa ggtgaccttg ctgaaatagt taaagcattt
      901 ttagtagaat tccaagaaaa atacgaaagt ttctataact cagataaact tgatgatatt
      961 ttagatcaag gtagagataa agcacacaaa gtttcattta aaactgtcaa aaaaatggaa
     1021 aaagcgatgg gtttaggacg taagagataa aataaagagg tactagaatt aactagtgcc
     1081 tcttttatta tttaacgtct acctctagga ttaaaagcat ctttaatccc ttcccctaca
     1141 aagtttatac ttaatatagt taatgtaatc attatagcag gtggcatcca tatccacggt
     1201 ttaccactta taacatcccc ttcttgagca tcactcaaca tattacccca agatggtatt
     1261 gctttactaa ttccgaatcc taaaaagctc aatcctgatt ccactacaat cataccggca
     1321 aataacaatg ttgcttgtac gataactaca cttaatatat tcggcaaaag atgtttcaaa
     1381 ataattttat atgtgggtgt accaattgat tttgctgcca aaaagtattc attttctttt
     1441 tcttgaagta ctttaccacg aacaagtctt gcaatacctc cccaacttaa tacgataata
     1501 actagaacaa gaattatggc agatccataa ggatttttaa ttttatctcc aagtgcagca
     1561 tttaatacaa ttgcaaatat taaaaatgga aataacataa caaattcggt tattctcatt
     1621 aataatgtat caacaatacc tccaaaataa ccagaaatca ctccaactgt aattccaatc
     1681 aaaagcattc ctattgtaga tgtaattcca atggataatg aaatacgacc tgcatataac
     1741 aaacgactaa agttatccct accaccagag tctgtaccaa gaatgttttg tgctgtcatt
     1801 tcacctttta tatttaataa atcttgttgg ttcactggaa aaggagctat taatggcgct
     1861 ataattgata caatagttat gattaataaa aaaataaccg ataacattgc aattttatta
     1921 tgaataaatt tagaaaatgc aattttaaaa ggcgattttg acttattttg cattctaatc
     1981 ccccctagtt acttctaatt cttggatcta taaatccata agtaatatca gaaatcaaat
     2041 tacccagtaa acctaaaaat gagaaaaata acgttaatgc catcattaat ggatagtctt
     2101 ggcctattac cgattctaaa aataatttac cgataccgtt atatgaaaag atagtctccg
     2161 taatcacggc tccacctaaa atacttacaa tatcagcacc taaaaatgta ataataggta
     2221 ttagagaatt tctcaatata tgtttattat aaattttatt catagataat ccttttgacc
     2281 ttgccgtcaa tacataatct tttttagaat tttcaataat atcattacgt aaatattgaa
     2341 tataaccagc agtagataat aaacctaaag tgaatgcagg taaaaatgtg tgatatattt
     2401 tactcatata atattcaaaa gtaccttctt taaggttaat atcaacagaa ccttgaaacg
     2461 ggaaccattg taattcaaaa gaaaaaataa aaattgcaaa tactcccgca ataaaagatg
     2521 gaatggctaa catcaaataa ttaaatattt gcacagtata atccgtcaaa ctgtaagaat
     2581 atctacctga cgttattcct aaagcaaatg agataatata agtaataatt aatgacatag
     2641 caccgagtaa tattgtattt ggaattcttt cctcaataac atcaattacc ggccttttat
     2701 atttgattga ctcacctaaa tcaccgtgta taacatgatt gacccatcta atgtattgat
     2761 gtggtattga gtcgttgaga cctaattttt ccctttgtgc atttattgct tcttgtttta
     2821 ttttaccgtt ttgtagatct gaaaatggat ctcctggttg tatgattgct aatgaaaata
     2881 caactattga gattaaaatt agtaacggga tcattaaccc taatctttta agtattaatt
     2941 taatcattta aatcacctac tttatctacg tagaaacaag caacttgatg ttcattacca
     3001 atgtccttta attctggcat actttttttg cacatatctt gagcaattgg acatcttgta
     3061 tgaaaaggac aaccttgcgg cggattactt ggcgaaggta attctccttt taatataatt
     3121 ctattgttat tatgtttatc aatttgtggt attgatgaaa tcaacgcttt tgtatatgga
     3181 tgtttgggat tttcataaat ttctttatca gatgcgattt caactatatg acctaaatac
     3241 ataactccaa tgacatcact tatatgtttt actacactta aatcatgtgc gataaataaa
     3301 tagcttaagt taaattgttc ttgtaaatct tttaataaat tcagtacttg agattgaaca
     3361 gatacatcta atgcacttac aggctcatca gcaacaatta aactcggacg caaagccaat
     3421 gctcttgcaa ttcccactct ttgtctctgt ccacctgaaa attcatgtgc atatttataa
     3481 tatgcatctt cacttaggcc aacacatttt aataaatata gtacttcttt ttttatttct
     3541 tcttttggca attttttata atttaaaata ggttctgaaa tgatatctcc aaccatttgc
     3601 atcggattca atgatgcata cggatcttga aatatcatct gatattgttg tcgtgatttt
     3661 ctgagttttt taccttgtaa tcttgttata tcttcaccat taacaattat tgagcctgaa
     3721 gttgcatctt caagcctgat aatcacttta cctaacgttg acttaccaca acccgattct
     3781 cctactaatc caaaagtttg tccttttttt attgaaaacg atacgtcatc aacagcttta
     3841 acgtactgag ttttttgtaa taatccagtt ttaattttgt agtatttttt tatttggttg
     3901 acttctaaaa tattttccat tcttatatct ccttatattc atttttgtac aaatgacaac
     3961 gtacaatgac atcttcacaa acatgcattt taggagattg attattacaa atatccagtt
     4021 ttttgttaca tctatttgca aatctgcact tattaacgtg aaatgcttgg attgatggca
     4081 caattccttc tatcgtttca agtcgtttct gctcttcttt aagttttgga attgttgata
     4141 ataatttttg ggtataagga tgtttcggat tgtgtagtat ttcttttatg cctccaaatt
     4201 ctacaatttg acctgcatac ataactaaga ctttatcgca aaactcagca actacactca
     4261 aatcatgtgt aatcatcata attgccattt gcgtttcctt ttgcaattct tttaataagt
     4321 ctaatatttg cgcttgaatc gtgacatcca atgctgttgt aggttcatca gcaattaata
     4381 atttaggaga acatgaaatg gccattgcaa tcattactct ttgtctcata ccaccagata
     4441 attgatgagg atagctattt aatatttcat cttgtctagc aattccaact ttttttagta
     4501 aatcttttgc taatttattt gcttcttttt tagaaatttt tttatgtgat tttatagatt
     4561 ccacaagttg attttttatg gtaaatacag gatttaaagc agtcataggt tcttgaaaaa
     4621 tcatagcaat atcatttcct cgaatatctg gcaattgctt ctcattgagc gtatcgattc
     4681 gtttaccatc aaatataact tctccattac ttagtttaga tatcttttct ggtaataatt
     4741 taataattga cttacttaat atggacttac cgcaaccaga ttcccctact atacccaaaa
     4801 cttctccttt agataattca aaagaaatat tttcaacagt tgctaaccat tcattattta
     4861 tttttaatga tgtttctaaa tctttaacct ctaacaatac attattcata acatcccccc
     4921 atataagtaa acctcgacaa aatcgtcgag gttacattac taagcttctt tagttaaatt
     4981 atataaactt tgatcagttc caatttcaat gtctaagttt cgtactttat cgttaacaat
     5041 agttatcgat ttaccttgga acattggtaa tccaggtaac tcatcattca tatatttttg
     5101 ccatttaaca taaatatctt tacgtttctt ttcatcaatg cctacttttt cgaagtctaa
     5161 tgcatcatct aaatattgat ctgattttgg taaaactgtt ctcatttcat tttgaggtct
     5221 atcagtgtgg tataaatctg atggatctgg atctgtacct cctgcccatg atctgaagta
     5281 cacttccata tctttagatg catttgctaa gtcttcatta tatttaccga attctactaa
     5341 cttcacattt gttttcaagc caactttttc ccagaaatct tttatcgcag cagttcttgg
     5401 ttcaaaagta ggattagaac ctgaataatg tttaaagtta atctcaaatt tattaccttt
     5461 aggatcttct ctaaatccgt caccatctct atctttataa cctaacttat ctaagatttt
     5521 tttagctttt tcaggatcat atttgtaatc atttaggtcc ttaggattgg ctgctatcca
     5581 atgcatagat ggtacaaaac tattgatttc actagcgtaa ccattgaaaa acgctttgat
     5641 ccatttttct ctatcaattg cataaagcat tgctttacgt aattctttgt cttcatattt
     5701 tggtctcact ttaccagttt tattagcttt tttatcgtaa tcatgagata cgaatcctat
     5761 taaaccgtag tctaagcttg gcgcagataa taccttgaga ccagcattag atgacttagc
     5821 atcttttgcc attgcaccgg tagcatcatt cgcaacatca atatcgcctt tttccattgc
     5881 cttaataatt tgcgcttgat caataacttt taaattgatt ttgtctagtg caggcttacc
     5941 ttgccaataa tcatcaaatt taacgagttg aacagcctca cctggaacga ttttcttaac
     6001 tttatacggt ccaataccaa taggatattt tcggatttta tctgatttcg ctaaatcttt
     6061 aattggtaca tctgataaat attttttact taataaaggt ccagtaataa atcctgttaa
     6121 gtaattttct tgttttttat caaatgtaac ctgcatagtg tagtcatcta ttttcttcaa
     6181 tccgctaata tgatcagttt ttccttcatg ataatctttc gcaccttgga tattttctac
     6241 acttggataa taagcacctt cgtagtcctt gttagctaag acttcaattg aataaatcca
     6301 atcatcaatt ttcaattcat taccatcatg ccatttaata ccttttttaa ttttaaattc
     6361 tattttctta gccggctcga tgtccttcca tgaagcaata tatgccttag gacgtatttt
     6421 tttatcagtt gctaataagc tttcgttaaa atatccctca actacagaat ctgcatgtgt
     6481 actatttaat aacgaagaat aaacaccact tggcggtgct gttaatgcta catttaaggt
     6541 accaccttta tgttttgagg tttccgtttt agtagcatct tttactcctt catctttatt
     6601 actgcttttt ccgcaagcac tcaacactaa aacgacaata agaagtattg aaatat
//
LOCUS       DAMQWL010000122         6606 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.124, whole genome shotgun sequence.
ACCESSION   DAMQWL010000122 DAMQWL010000000
VERSION     DAMQWL010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6606
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.124"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            102..1331
                     /locus_tag="PF788_002294"
     CDS             102..1331
                     /locus_tag="PF788_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HDG6304539.1"
                     /translation="MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPC
                     KDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGIN
                     GVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQ
                     HGTAIVTLAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRG
                     AIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMA
                     DNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEAT
                     HINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIE
                     VDPQDVYDKTMKLTDLQ"
     gene            1526..2383
                     /locus_tag="PF788_002295"
     CDS             1526..2383
                     /locus_tag="PF788_002295"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HDG6304540.1"
                     /translation="MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKE
                     LAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQ
                     QKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFI
                     LFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGD
                     INLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEI
                     LKIHQEVTK"
     gene            2383..3327
                     /locus_tag="PF788_002296"
     CDS             2383..3327
                     /locus_tag="PF788_002296"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HDG6304541.1"
                     /translation="MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERET
                     KKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLN
                     GRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAY
                     PGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTY
                     SVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQA
                     LAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE"
     gene            3596..4564
                     /gene="pfkA"
                     /locus_tag="PF788_002297"
     CDS             3596..4564
                     /gene="pfkA"
                     /locus_tag="PF788_002297"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002462395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDG6304542.1"
                     /translation="MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGL
                     LNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGG
                     DGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTAS
                     SHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHS
                     IVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDL
                     LMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI"
     gene            4586..6343
                     /gene="pyk"
                     /locus_tag="PF788_002298"
     CDS             4586..6343
                     /gene="pyk"
                     /locus_tag="PF788_002298"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDG6304543.1"
                     /translation="MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHK
                     GRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPE
                     KFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNL
                     PGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFP
                     KIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITA
                     TQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSA
                     EAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYR
                     PHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLI
                     IITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDK
                     VIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNM
                     LVTIDAAQGKIFEGYANVL"
BASE COUNT         2336 a          884 c         1351 g         2035 t
ORIGIN      
        1 tcttactcat tcagatttac ccaatatttt tacttttata atgtaatgcg ttttatccaa
       61 gttatttttt aaaaataaat attgaattag gggctgattt catgtcatta agagatgaag
      121 cattggaaat gcacaaacgt aatcaaggta aattagaagt taaaccaaat gtaaaagtta
      181 ctaataaaga ggaattaagt ttagcatact cacctggcgt tgctgaaccg tgtaaagata
      241 tttatgaaga taaaagaaaa gtatatgatt acacaattaa aggaaataca gttgcagtta
      301 ttactgatgg aacagcggta ttaggtttag gtaacattgg acctgaagca agtattcctg
      361 taatggaagg taaagcagta ttattcaaaa gcttcgctgg tatcaatggg gtgcctattg
      421 cgttaaatac aactgatacc gaagaaatca ttaaaacagt taagttgtta gaacctaatt
      481 atggtggtat taatttagag gatatttcgg caccacgttg ttttgaaatt gaagaacgat
      541 tgaaaaaaga aactaatatt ccggtattcc atgacgatca acatggtaca gcaattgtaa
      601 cattggcagg tttggtaaat gcattgagag ttgttaacaa agatattgct aaaataaaag
      661 ttgtactaaa tggtgctggt gcagcaggaa tagccattgt taaattacta tacgcgtatg
      721 gtgtaagaaa tatggttatg tgtgactcaa gaggcgcaat ttttgaagga cgttcatatg
      781 gtatgaatcc tacgaaagat gttgtagcaa aatggacaaa taaagataag attgaagggt
      841 ctttagaaga agtcgtaaaa gatgcagatg tatttatcgg ggtttctgta gctaatgcgc
      901 tgtcacaaga tatggttaag agtatggcag ataatccaat tatatttgca atggctaatc
      961 caaatcctga aataatacct gatgatgcca aagcggcagg tgcacgagtt gttggtacag
     1021 gacgttcaga ctatcctaac caaattaata atgtattagc tttccctggt atttttagag
     1081 gtgcattaga ggttgaagct acacatataa atgaagaaat gaaaaaggca gctgtagaag
     1141 cgattgctga tttaatcgat agttctgaat taaatgaaga ctactgtatc ccaggaccgt
     1201 ttgataaacg tgtagcgcca tcagttgctc gtaatgttgc taaagcggca atggaatctg
     1261 gagtagctag gattgaagtt gatccgcaag atgtgtatga taaaacaatg aaacttacag
     1321 atttacaata aaaataatta acgtttaatt aaattgctta aaagttagca ataaagagtc
     1381 attaaaatga tgaaaatgaa agtttatgat aaacattcaa cagtcaaacg aatataaatc
     1441 aaataaattt aaacccgttt ttaactggtc aagttcagtt taaggctcta aatggttaga
     1501 acagaggtta tttggaggtt ttcctatgtt taaagatttt tttaatcgaa caaagaaaaa
     1561 gaaatatctt acagtacaag actctaaaaa taatgatgtg cctgcaggta ttatgactaa
     1621 gtgtccaaag tgtaagaaaa ttatgtacac aaaagaatta gctgaaaatt taaatgtgtg
     1681 ctttaattgt gatcatcata ttgctttaac tgcgtataaa cgtatagaag caatttctga
     1741 tgagggatca tttacagaat tcgataaggg aatgacctct gcgaatccat tagattttcc
     1801 aagttattta gaaaaaattg aaaaggacca acaaaagaca ggtcttaaag aagcagttgt
     1861 gactggtaca gcacaactag atggtatgaa atttggcgtt gctgtcatgg attcacgttt
     1921 tagaatggga agtatgggat cggttatcgg tgaaaagata tgtcgcatca ttgattactg
     1981 cactgagaac cgtttaccat ttattctttt ctctgcaagt ggtggtgcac gtatgcaaga
     2041 aggtattatt tccttgatgc aaatgggtaa aaccagtgta tctttaaaac gtcattctga
     2101 cgctggacta ttatatatat catatttaac acatccaact actggtggtg tatctgcaag
     2161 ttttgcatca gttggtgata taaatttaag tgagccaaaa gcgttgatag gttttgcagg
     2221 tcgtcgagtt attgaacaga caataaacga aaaattgcca gatgatttcc aaactgcaga
     2281 atttttatta gagcatggac aattggataa agttgtacat cgtaatgata tgcgtcaaac
     2341 attgtctgaa attctaaaaa tccatcaaga ggtgactaaa taatgttaga ttttgaaaaa
     2401 ccactttttg aaattcgaaa taaaattgaa tctttaaaag aatctcaaga taaaaatgat
     2461 gtggatttac aagaagaaat tgacatgctt gaagcgtcat tggaacgaga aactaaaaaa
     2521 atatatacaa atctaaaacc atgggatcgt gtgcaaattg cgcgtttgca agaaagacct
     2581 acgaccctag attatattcc atatatcttt gattcgttta tggaactaca tggtgatcgt
     2641 aattttagag atgatccagc aatgattggt ggtattggct ttttaaatgg tcgtgctgtt
     2701 acagttattg gacaacaacg tggaaaagat acaaaagata atatttatcg aaattttggt
     2761 atggcgcatc cagaaggtta tcgaaaagca ttacgtttaa tgaaacaagc tgaaaaattc
     2821 aatcgtccta tctttacatt tatagataca aaaggtgcat atcctggtaa agctgctgaa
     2881 gaacgtggac aaagtgaatc tatcgcaaca aatttgattg agatggcttc attaaaagta
     2941 ccagttattg cgattgtcat tggtgaaggt ggcagtggag gtgctctagg tattggtatt
     3001 gccaataaag tattgatgtt agagaatagt acttactctg ttatatctcc tgaaggtgca
     3061 gcggcattat tatggaaaga cagtaatttg gctaaaattg cagctgaaac aatgaaaatt
     3121 actgcccatg atattaagca attaggtatt atagatgatg tcatttctga accacttggc
     3181 ggtgcacata aagatattga acagcaagct ttagctatta aatcagcgtt tgttgcacag
     3241 ttagattcac ttgagtcatt atcacgtgat gaaattgcta atgatcgctt tgaaaaattc
     3301 agaaatatcg gttcttatat agaataatca acttgagcat ttttatgtta aatcgatact
     3361 gggttttacc ataaattgaa gtacattaaa acaataattt aatatttaga tactgaattt
     3421 taactaagat tagtagtcaa aattgtggct actaatcttt ttttaattaa gttaaaataa
     3481 aattcaatat ttaaaacgtt tacatcaatt caatacatta gttttgatgg aatgacatat
     3541 caatttgtgg taatttagag ttaaagataa atcagttata gaaaggtatg tcgtcatgaa
     3601 gaaaattgca gttttaacta gtggtggaga ttcacctgga atgaatgctg ccgtaagagc
     3661 agttgttcgt acagcaattt acaatgaaat tgaagtttat ggtgtgtatc atggttacca
     3721 aggattgtta aatgatgata ttcataaact tgaattagga tcagttgggg atacgattca
     3781 gcgtggaggt acattcttgt attcagcaag atgtccagag tttaaggagc aagaagtacg
     3841 taaagttgca atcgaaaact tacgtaaaag agggattgag ggccttgtag ttattggtgg
     3901 tgacggtagt tatcgcggtg cacaacgcat cagtgaggaa tgtaaagaaa ttcaaactat
     3961 cggtattcct ggtacgattg acaatgatat caatggtact gattttacaa ttggatttga
     4021 cacagcatta aatacgatta ttggcttagt cgacaaaatt agagatactg cgtcaagtca
     4081 cgcacgaaca tttatcattg aagcaatggg ccgtgattgt ggagatctag cattatgggc
     4141 tggattatca gttggtgctg agacaattgt agttccagaa gtgaaaacag atattaaaga
     4201 aatagctgat aaaattgaac aaggtattaa acgtggtaag aaacactcaa tcgttcttgt
     4261 agcagaaggt tgtatgactg cgcaagattg tcaaaaagaa ttatcacaat acatcaatgt
     4321 tgataataga gtgtctgtgt taggtcacgt tcaacgtggt ggtagcccaa caggtgcgga
     4381 tagagtttta gcatcacgtt taggtggata tgcggtagac ttattaatgc aaggtgaaac
     4441 agctaagggt gttggaatta agaacaataa aattgtagca acatcttttg atgaaatttt
     4501 tgatggtaaa gatcataaat ttgattatag tctatatgaa cttgctaaca agttatctat
     4561 ataagatttc aggaggaatt ataaaatgag aaaaactaaa attgtatgta caattggacc
     4621 agcttcagaa tcagaagaaa tgattgagaa attaatcaat gctggtatga acgttgcacg
     4681 attaaacttt tcacatggta gtcatgaaga gcataaaggt agaattgata caattcgtaa
     4741 agtagctaaa agattagaca aaattgtagc aattttatta gatacaaaag gtccagaaat
     4801 tcgtacgcat aatatgaaag acggtatcat tgaacttgaa cgtggcaacg aagttattgt
     4861 tagcatgaat gaagttgaag gaacacctga aaagttctca gtaacatatg aaaacttaat
     4921 taacgatgtt caagtaggtt catacatttt acttgatgat ggcttaattg aattacaagt
     4981 taaagatatt gaccatgcta aaaaagaagt taaatgtgat attttaaact ctggtgagct
     5041 taaaaacaaa aaaggtgtta acttacctgg cgtaagagta agtttacctg gtattacaga
     5101 aaaagatgct gaagatatcc gtttcggtat taaagaaaat gttgacttca ttgcagcaag
     5161 tttcgtacgt cgtcctagtg atgttttaga aattcgtgaa attttagaag aacaaaaagc
     5221 taacatttca gtattcccta aaattgaaaa ccaagaaggt attgataata ttgcggaaat
     5281 tcttgaagtg tctgatggtt taatggttgc acgtggtgac atgggtgttg aaattccacc
     5341 tgaaaaagta ccaatggttc aaaaagattt aatcagacaa tgtaacaaat taggtaaacc
     5401 agttattaca gctacacaaa tgttagattc tatgcaacgt aacccacgtg ctacacgtgc
     5461 agaagctagt gacgttgcca acgcaatcta tgatggtaca gatgcagtaa tgttatctgg
     5521 tgaaactgct gctggtttat atcctgaaga agctgttaaa acaatgagaa atattgctgt
     5581 atcagctgaa gcagcccaag attacaaaaa gttattgtca gatcgtacta aattagttga
     5641 aacttcatta gtgaatgcta tcggtatttc ggttgcacat acagctttaa acttaaatgt
     5701 taaagcaatt gtagctgcta ctgaaagtgg ttcaacggca cgtactatct ccaaatatcg
     5761 tccacattca gacattattg cggtgactcc aagtgaagaa actgcacgtc aatgttcaat
     5821 tgtttgggga gttcaacctg tagttaaaaa aggacgtaag agtacagatg cattgttaaa
     5881 caatgcagtt gcaacagctg ttgaaactgg tagagtatct aatggtgatt taatcattat
     5941 tactgctggt gtaccaactg gtgaaactgg aactactaat atgatgaaaa tccacctagt
     6001 tggtgacgaa attgctaatg gtcaaggtat tggacgtgga tcagttgttg gtactacgtt
     6061 agttgctgaa actgttaaag atttagaagg taaagattta tctgacaaag ttatcgttac
     6121 taactcaatc gatgaaacgt ttgtacctta tgtagaaaaa gctttaggct taattacaga
     6181 agaaaatggt attacatcac caagtgcaat tgttggttta gaaaaaggta ttccaacagt
     6241 tgtaggtgta gaaaaagctg ttaaaaacat aagcaataac atgttagtta cgattgatgc
     6301 tgctcaaggt aaaatctttg aaggatatgc aaacgtacta taatttataa aaaaacgtct
     6361 ttccatttat caacaatgga aaggcgtttt ttggttcatc tggtatttta tgacgtaatt
     6421 aataggttat ttgataatga tagtgtatga atggcaatct atataaatgt ttatatcttt
     6481 tatacatgta cattatcacc ttcaaacttt cactcatatt actttggaaa tttattataa
     6541 aatagaagta tggatgtatt tctgaaatga tacattatta aatagatgag aaagtaaaag
     6601 ttttga
//
LOCUS       DAMQWL010000123         6501 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.125, whole genome shotgun sequence.
ACCESSION   DAMQWL010000123 DAMQWL010000000
VERSION     DAMQWL010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6501
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.125"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..173)
                     /locus_tag="PF788_002299"
     CDS             complement(<1..173)
                     /locus_tag="PF788_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015063485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HDG6304544.1"
                     /translation="MNYFRYKQFNKDVITVAVGYYLRYTLSYRDISEILRERGVNVHH
                     STVYRWVQEYAPI"
     gene            227..598
                     /locus_tag="PF788_002300"
                     /pseudo
     CDS             227..598
                     /locus_tag="PF788_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016912861.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase family
                     protein"
     gene            1435..2178
                     /locus_tag="PF788_002301"
     CDS             1435..2178
                     /locus_tag="PF788_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphoryl diester phosphodiesterase"
                     /protein_id="HDG6304545.1"
                     /translation="MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDE
                     QLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANE
                     YNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIM
                     PQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVN
                     KPARANQLANWGVDGIFTDNADKMVHLSQ"
     gene            2275..2703
                     /locus_tag="PF788_002302"
     CDS             2275..2703
                     /locus_tag="PF788_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000872606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HDG6304546.1"
                     /translation="MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAE
                     QSRFKGIIASGMHTLSISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAE
                     ITNKKSIKKENGLVTVSLSTYNENEEIVFKGEVTALINNS"
     gene            complement(2749..4758)
                     /gene="mecA"
                     /locus_tag="PF788_002303"
     CDS             complement(2749..4758)
                     /gene="mecA"
                     /locus_tag="PF788_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001801873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBP2a family beta-lactam-resistant peptidoglycan
                     transpeptidase MecA"
                     /protein_id="HDG6304547.1"
                     /translation="MMKKIKIVPLILIVVVVGFGIYFYASKDKEINNTIDAIEDKNFK
                     QVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVDAQYKI
                     KTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQSIHIENLKSERGKILDRNN
                     VELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTV
                     KKMDEYLSDFAKKFHLTTNETESRNYPLGKATSHLLGYVGPINSEELKQKEYKGYKDD
                     AVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQ
                     KSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPL
                     LNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVV
                     NGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKN
                     LDNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISK
                     ENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETGRQIGWFISYDKD
                     NPNMMMAINVKDVQDKGMASYNAKISGKVYDELYENGNKKYDIDE"
     gene            4855..5841
                     /locus_tag="PF788_002304"
     CDS             4855..5841
                     /locus_tag="PF788_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactam sensor/signal transducer MecR1"
                     /protein_id="HDG6304548.1"
                     /translation="MLSSFLMLSIISSLLTICVIFLVRMLYIKYTQNIMSHKIWLLVL
                     VSTLIPLIPFYKISNFTFSKDMMNRNVSDTTSSVSHMLDGQQSSVTKDLAINVNQFET
                     SNITYMILLIWVFGSLLCLFYMIKAFRQIDVIKSSSLESSYLNERLKVCQSKMQFYKK
                     HITISYSSNIDNPMVFGLVKSQIVLPTVVVETMNDKEIEYIILHELSHVKSHDLIFNQ
                     LYVVFKMIFWFNPALYISKTMMDNDCEKVCDRNVLKILNRHEHIRYGESILKCSILKS
                     QHINNVAAQYLLGFNSNIKERVKYIALYDSMPKPNRNKRIVAYIVCSISSFT"
     gene            5813..6073
                     /locus_tag="PF788_002305"
     CDS             5813..6073
                     /locus_tag="PF788_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3387 domain-containing protein"
                     /protein_id="HDG6304549.1"
                     /translation="MYVVYRASHETAKEALGDKELRAIAHELTKTVKDNMSVDWSKRD
                     SAKAKMRVQVRRLLKKYGYPPDLQKMAVEQVVEQAELMASQQ"
     gene            complement(6064..>6501)
                     /locus_tag="PF788_002306"
     CDS             complement(6064..>6501)
                     /locus_tag="PF788_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011274780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDG6304550.1"
                     /translation="LYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKL
                     SEPETKNIYSQRKIDVEPVFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVA
                     QRAENNQKIYKKDNFYIISIEIVFFHLSKNFMSRTHYDLFFYC"
BASE COUNT         2211 a          962 c         1056 g         2272 t
ORIGIN      
        1 aaaattgggg catattcttg aacccaacgg tagaccgttg aatgatgaac gtttacacca
       61 cgttccctta atatttcaga tatatcacga taactcaatg tatatcttag atagtagcca
      121 acggctacag tgataacatc cttgttaaat tgtttatatc tgaaatagtt catacagaag
      181 actccttttt gttaaaatta tactataaat tcaactttgc aacagaaccg tattatggaa
      241 tagagatgtt ggtaacattt atacaggatc attatactta agtttaattt cgttattaca
      301 gaaccacaca ttccaaccag aagagaaagt atgtctattt agttatggtt caggagcagt
      361 aggagaaatc tttagtggtt caatcgttaa aggatatgac aaagcattag ataaagagaa
      421 acacttaaat atgctagaat ctagagagca attatcagtc gaagaatacg aaacattctt
      481 taacagattt gataatcaag aatttgattt cgaacgtgaa ttgacacaag atccatattc
      541 aaaagtatac ttatacagta tagaagacca tatcagaaca tataagatag agaaataaac
      601 tagtggccga ttgtgcttga tgagcttggg acataaatcc taactcgaaa taaataagca
      661 tatcactaaa ctgatttttt aaagtttaca gtgatatgct tattttttta tcttacgatt
      721 ttgtacgtgc atgcttgcct aggggtatgg ctcgagccat tagtctctcg cacatactat
      781 tccctcaggc gtcagcactt acaaaatcgg ttgtaatttt catttttata cgcattctta
      841 ctgagattat actaataaga ggaatagtaa aagcaattct aagtaaaatt gcagataaga
      901 ggtttgttaa aagcagttct cagtaaaatt acagataaga ggtacgttaa aagcagttct
      961 cagtaaaatt gcagataaga ggtttgttaa aagcagttct aagtaaaatt gcagataaga
     1021 ggtacgttaa aagcaattcc atgcaaaatt gctgataagg ggtaagttaa aagcagttct
     1081 cagtaaaatt gcagataaga ggtacgttaa aagcagttct aggcaaaatt gcagataaga
     1141 ggtgcgttaa aagcagttct cagtaaaatt gctgataagg ggtaagttaa aagcaatcct
     1201 aagtaaaatt gcagataagg ggtacagaaa aactagactt gattacaaaa tggagcttgg
     1261 gacataaatg attttttaaa aatgagatga gacgtagatt aactccataa tcaatacgaa
     1321 tctatcgact tctttattta tgatattcat ctctttttaa tggaaataaa agtgcgatta
     1381 atgtgataat acagttacgt taattaaaaa aataaaaatg caaggagagg taatatgcta
     1441 actgtatatg gacatagagg attacctagt aaagctccgg aaaatacaat tgcatcattt
     1501 aaagctgctt cagaagtaga aggtataaac tggttggagt tagatgttgc aattacaaaa
     1561 gatgaacaac tgattatcat tcatgatgat tatttagaac ggactacaaa tatgtccggg
     1621 gaaataactg aattgaatta tgatgaaatt aaagatgctt ctgcaggatc ttggtttggt
     1681 gaaaaattca aagatgaaca tttgccaact ttcgatgatg tagtaaaaat agcaaatgaa
     1741 tataatatga atttaaatgt agaattaaaa ggtattactg gaccgaatgg actagcactt
     1801 tctaaaagta tggttaagca agtggaagaa caattaacaa acttaaatca gaatcaagaa
     1861 gtgctcattt caagctttaa tgttgtgctt gttaaacttg cagaagaaat catgccacaa
     1921 tataacagag cagttatatt ccatacaact tcgtttcgtg aagactggag aacactttta
     1981 gattactgta atgctaaaat agtaaacact gaagatgcca aacttactaa agcaaaagta
     2041 aaaatggtaa aagaagcggg ttatgaattg aacgtatgga ctgtaaacaa accagcacgt
     2101 gcaaaccaac ttgctaattg gggagttgat ggtatcttta cagacaatgc agataaaatg
     2161 gtgcatttgt ctcaatagaa agttagaggt gagtcttacg tttcagtgac ggtagactta
     2221 cctttaacat gttacatact aaaaaattaa tttgaataag aaagagagac atatatgaaa
     2281 tacgatgatt ttatagtagg agaaacattc aaaacaaaaa gccttcatat tacagaagaa
     2341 gaaattatcc aatttgcaac aacttttgat cctcaatata tgcatataga taaagaaaaa
     2401 gcagaacaaa gtagatttaa aggtatcatt gcatctggca tgcatacact ttcaatatca
     2461 tttaaattat gggtagaaga aggtaaatac ggagaagaag ttgtagcagg aacacaaatg
     2521 aataacgtta aatttattaa acctgtatac ccaggtaata cattgtacgt tatcgctgaa
     2581 attacaaata agaaatccat aaaaaaagaa aatggactcg ttacagtgtc actttcaaca
     2641 tacaatgaaa atgaagaaat tgtatttaag ggagaagtaa cagcacttat taataattca
     2701 taataaaaca gtgaagcaac catcgttacg gattgcttca ctgttttgtt attcatctat
     2761 atcgtatttt ttattaccgt tctcatatag ctcatcatac actttacctg agattttggc
     2821 attgtagcta gccattcctt tatcttgtac atctttaaca ttaatagcca tcatcatgtt
     2881 tggattatct ttatcatatg atataaacca cccaatttgt ctgccagttt ctccttgttt
     2941 cattttgagt tctgcagtac cggatttgcc aattaagttt gcataagatc tataaatatc
     3001 ttctttatgt gttttattta cgacttgttg cataccatca gttaatagat tgatattttc
     3061 tttggaaata atatttttct tccaaacttt gtttttcgtg tcttttaata agtgaggtgc
     3121 gttaatattg ccattatttt ctaatgcgct atagattgaa aggatctgta ctgggttaat
     3181 cagtatttca ccttgtccgt aacctgaatc agctaataat atttcattat ctaaattttt
     3241 gtttgaaatt tgagcattat aaaatggata atcacttggt atatcttcac caacacctag
     3301 ttttttcatg cctttttcaa atttcttact gcctaattcg agtgctactc tagcaaagaa
     3361 aatgttatct gatgattcta ttgcttgttt taagtcgata ttaccattta ccacttcata
     3421 tcttgtaacg ttgtaaccac cccaagattt atctttttgc caacctttac catcgatttt
     3481 ataacttgtt ttatcgtcta atgttttgtt atttaaccca atcattgctg ttaatatttt
     3541 ttgagttgaa cctggtgaag ttgtaatctg gaacttgttg agcagaggtt cttttttatc
     3601 ttcggttaat ttattatatt cttcgttact catgccatac ataaatggat agacgtcata
     3661 tgaaggtgtg cttacaagtg ctaataattc acctgtttga gggtggatag cagtacctga
     3721 gccataatca tttttcatgt tgttataaat actcttttga actttagcat caatagttag
     3781 ttgaatatct ttgccatctt ttttcttttt ctctattaat gtatgtgcga ttgtattgct
     3841 attatcgtca acgattgtga cacgatagcc atcttcatgt tggagctttt tatcgtaaag
     3901 tttttcgagt ccctttttac caataactgc atcatcttta tagcctttat attctttttg
     3961 ttttaattct tcagagttaa tgggaccaac ataacctaat agatgtgaag tcgcttttcc
     4021 tagaggatag ttacgacttt ctgtttcatt agttgtaaga tgaaattttt ttgcgaaatc
     4081 acttaaatat tcatccattt ttttaacggt tttaagtgga acgaaggtat catcttgtac
     4141 ccaattttga tccatttgtt gtttgatata gtcttcagaa atacttagtt ctttagcgat
     4201 tgctttataa tcttttttag atacattctt tggaacgatg cctatctcat atgctgttcc
     4261 tgtattggcc aattccacat tgtttcggtc taaaatttta ccacgttctg attttaaatt
     4321 ttcaatatgt atgctttggt ctttctgcat tcctggaata atgacgctat gatcccaatc
     4381 taacttccac ataccatctt ctttaacaaa attaaattga acgttgcgat caatgttacc
     4441 gtagtttgtt ttaattttat attgagcatc tactcgtttt ttatttttag atactttttt
     4501 tattttacga tcctgaatgt ttatatcttt aacgcctaaa ctattatata tttttatcgg
     4561 acgttcagtc atttctactt caccattatc gcttttagaa atataactgc tatctttata
     4621 aacttgtttg aaatttttat cttcaattgc atcaatagta ttattaattt ctttatcttt
     4681 tgaagcataa aaatatatac caaacccgac aactacaact attaaaataa gtggaacaat
     4741 ttttatcttt ttcatcaata tactccttat ataagactac atttgtagta tattacaaat
     4801 gtagtattta tgtcaaaata atgttataat ttttgtgata tggaggtgta gaaggtgtta
     4861 tcatcttttt taatgttaag tataatcagt tcattgctca cgatatgtgt aattttttta
     4921 gtgagaatgc tctatataaa atatactcaa aatattatgt cacataagat ttggttatta
     4981 gtgctcgtct ccacgttaat tccattaata ccattttaca aaatatcgaa ttttacattt
     5041 tcaaaagata tgatgaatcg aaatgtatct gacacgactt cttcggttag tcatatgtta
     5101 gatggtcaac aatcatctgt tacgaaagac ttagcaatta atgttaatca gtttgagacc
     5161 tcaaatataa cgtatatgat tcttttgata tgggtatttg gtagtttgtt gtgcttattt
     5221 tatatgatta aggcattccg acaaattgat gttattaaaa gttcgtcatt ggaatcgtca
     5281 tatcttaatg aacgacttaa agtatgtcaa agtaagatgc agttctacaa aaagcatata
     5341 acaattagtt atagttcaaa cattgataat ccgatggtat ttggtttagt gaaatcccaa
     5401 attgtactac caactgtcgt agtcgaaacc atgaatgaca aagaaattga atatattatt
     5461 ctacatgaac tatcacatgt gaaaagtcat gacttaatat tcaaccagct ttatgttgtt
     5521 tttaaaatga tattctggtt taatcctgca ctatatataa gtaaaacaat gatggacaat
     5581 gactgtgaaa aagtatgtga tagaaacgtt ttaaaaattt tgaatcgcca tgaacatata
     5641 cgttatggtg aatcgatatt aaaatgctct attttaaaat ctcagcacat aaataatgtg
     5701 gcagcacaat atttactagg ttttaattca aatattaaag aacgtgttaa gtatattgca
     5761 ctttatgatt caatgcctaa acctaatcga aacaagcgta ttgttgcgta tattgtatgt
     5821 agtatatcga gcttcacatg aaacagctaa agaagctttg ggcgataaag agttaagagc
     5881 cattgcacat gagttaacta aaacagttaa ggataacatg agtgttgatt ggtctaaacg
     5941 agacagtgct aaagctaaaa tgagagttca agttagacgc ctattaaaga aatatggcta
     6001 tccaccagat cttcaaaaaa tggctgtgga acaagttgta gagcaagcag aattaatggc
     6061 aagtcagcaa taaaaaaata aatcataatg agtccgggac ataaagttct tggataagtg
     6121 aaaaaagaca atttctattg aaataatata gaaattgtct tttttataaa ttttttgatt
     6181 attttcagct cgttgagcta ctacttttct tatattaagt gccattaata caaaaccaag
     6241 ttctcttttg actttattga gtcctcggac agacatccga gtgaaaccca aaatagcctt
     6301 cataaatcca aaaacaggtt ccacatcaat ttttctttga ctgtagatat tttttgtttc
     6361 tggttctgaa agctttttgt taatttggga tttaaaatat tcccagttat aattcttcat
     6421 tatttttttg tttgtttttg aattgaagtt catacattga tttttcagag gacattctga
     6481 acaatcatca cattcatata a
//
LOCUS       DAMQWL010000124         6346 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.126, whole genome shotgun sequence.
ACCESSION   DAMQWL010000124 DAMQWL010000000
VERSION     DAMQWL010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6346
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.126"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..892
                     /gene="fmtA"
                     /locus_tag="PF788_002307"
     CDS             <1..892
                     /gene="fmtA"
                     /locus_tag="PF788_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="teichoic acid D-Ala esterase FmtA"
                     /protein_id="HDG6304551.1"
                     /translation="MSKGYGYQDFEKGIKNTPNTMFLIGSAQKFSTGLLLKQLEEEHK
                     ININDPVSKYLPWFKTSKPIPLKDLMLHQSGLYKYKSSKDYKNLDQAVKAIQKRGIDP
                     KKYKKHMYNDGNYLVLAKVIEEVTGKSYAENYYTKIGDPLKLQHTAFYDEQPFKKYLA
                     KGYAYNSTGLSFLRPNILDQYYGAGNLYMTPTDMGKLITQIQQYKLFSPKITNPLLHE
                     FGTKKYPDEYRYGFYAKPTLNRLNGGFFGQVFTVYYNDKYVVVLALNVKGNNEVRIKH
                     IYNDILKQNKPYNTKGVIVQ"
     gene            complement(1429..1707)
                     /gene="qoxD"
                     /locus_tag="PF788_002308"
     CDS             complement(1429..1707)
                     /gene="qoxD"
                     /locus_tag="PF788_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit IV"
                     /protein_id="HDG6304552.1"
                     /translation="MKHTVGFIASIVLTLLAVYVTLYTSLTFHAKLTIIFGFAFVQAG
                     LQLLMFMHLTEGKDGRLQTFKVIFALVITLCFVVGTYWVMQGGHSSHL"
     gene            complement(1716..2321)
                     /gene="qoxC"
                     /locus_tag="PF788_002309"
     CDS             complement(1716..2321)
                     /gene="qoxC"
                     /locus_tag="PF788_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit III"
                     /protein_id="HDG6304553.1"
                     /translation="MSHDTNTIDSRTHEGELNKLGFWIFITAEFALFGTLFATLLTLQ
                     HGGDYAGKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQEKQKLMMFWMIITLLL
                     GLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSLGIVWAICLLIQIQR
                     RGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIGMVYSG"
     gene            complement(2311..4299)
                     /gene="qoxB"
                     /locus_tag="PF788_002310"
     CDS             complement(2311..4299)
                     /gene="qoxB"
                     /locus_tag="PF788_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001010769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit I"
                     /protein_id="HDG6304554.1"
                     /translation="MNFPWDQLLVKGNWMITMAQIGAPFLVIGLIAVITYFKLWKYLY
                     KEWFTSVDHKKIGIMYLICAVLMFVRGGIDALLIRAQLTVPDNKFLESNHYNEIFSTH
                     GVIMIIFMAMPFIFGLWNIVVPLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGG
                     SPAAGWTNYAPLAGEFSPGPGVNYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFM
                     QMPMFTVTTFITTLIVILAFPPLTVALALMTTDRIFDTAFFTVAHGGMPMLWANFFWV
                     WGHPEVYIVILPAFGIYSEIIPTFARKRLFGHQSMVWATAGIAFLSFLVWVHHFFTMG
                     NGALINSFFSISTMLIGIPTGVKLFNWLLTLYKGRITFESPMLFSLAFIPNFLLGGVT
                     GVMLAMASADYQYHNTYFLVAHFHYTLVTGVVFACLAGLIFWYPKMMGYKLNETLNKW
                     CFWFFMIGFNVCFLPQFILGLDGMPRRLYTYMPSDGWFLLNLISTIGALLMAIGFLFL
                     VVSIVYSHFKSPREATGDNWDGLGRTLEWTTASAIPPKYNFAITPDWNDYDTFVDMKE
                     HGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTIGGFFLIFETVIPALICLFGIFGTMIY
                     RSFQIDHGYHIPAAEVAETEARLREARIKEREAVSHES"
     gene            complement(4299..5399)
                     /gene="qoxA"
                     /locus_tag="PF788_002311"
     CDS             complement(4299..5399)
                     /gene="qoxA"
                     /locus_tag="PF788_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit II"
                     /protein_id="HDG6304555.1"
                     /translation="MSKFKSLLLLFGTLILLSGCSNIEIFNAKGPVASSQKFLILYSI
                     VFMLVICFVVLGMFAIFIYKYSYNKNAESGKMHHNAIIETIWFVIPIIIVAALAIPTV
                     KTLYDYEKPPKSEKDPMVVYAVSAGYKWFFAYPDEHIETVNTLTIPKDRPVVFKLQAM
                     DTMTSFWIPQLGGQKYAMTGMTMNWTLEASQTGTFRGRNSNFNGEGFSRQTFKVNAVS
                     QKDYDKWVKEVKGKKTLDQDTFDKQLLPSTPNKALEFNGTHMAFVDPAADPEYIFYAY
                     KRFNFELKDPNFTSEENMFKDVSDKPLIPARKAQITNANYKRHGMKLMILGNDEPYNN
                     EFKKDESKNAKEMKKISKDAQDQDNDDHGGGH"
     gene            5701..5823
                     /locus_tag="PF788_002312"
     CDS             5701..5823
                     /locus_tag="PF788_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304556.1"
                     /translation="MIERKRKHFNKEFAKSNLSLNNEKWKFVCSKSKHFFKKSS"
     gene            complement(5971..6288)
                     /locus_tag="PF788_002313"
     CDS             complement(5971..6288)
                     /locus_tag="PF788_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5011 domain-containing protein"
                     /protein_id="HDG6304557.1"
                     /translation="MNKLLQSLSALGVSATLVTPNLNADATTNTTPQIKGANDIVIKK
                     GQDYNLLNGISAFDKEDGDLTDKIKVDGQIDTSKSGKYQIKYHVTDSDGAIKISTRYI
                     EVK"
BASE COUNT         2236 a         1010 c         1091 g         2009 t
ORIGIN      
        1 aatgagtaaa ggttatggat atcaagattt tgaaaaaggt attaaaaaca caccgaatac
       61 gatgttttta ataggttcag ctcaaaaatt ttcaacaggg ttactgttaa aacagttaga
      121 agaagaacat aaaataaata tcaatgatcc agtaagtaaa taccttccat ggtttaaaac
      181 atctaagcct atcccattga aagatttaat gttgcatcaa agtggattat ataaatataa
      241 atcctcaaaa gattataaaa atttagatca agcagttaaa gcgattcaaa aacgtggtat
      301 tgatcctaag aaatacaaaa agcatatgta taacgatggg aattatttag tacttgcgaa
      361 agtaattgaa gaagttacag gtaaatctta tgctgagaat tattatacaa aaataggaga
      421 tcctttaaaa cttcagcaca cagcatttta tgatgaacaa ccttttaaaa aatatctagc
      481 aaaaggttat gcttataata gtacaggact ttcattctta agacctaata ttttggacca
      541 atactatggt gcaggtaatt tatatatgac accaacagat atgggtaaat taattactca
      601 aatacaacaa tataaattat tcagtcctaa aataaccaat ccattattac atgagtttgg
      661 tacgaaaaag tatccagatg aatatcgata tggtttctat gctaagccaa cattgaatag
      721 acttaacggg ggattctttg gacaagtctt tactgtttac tataatgata agtatgtagt
      781 tgtacttgca ttaaatgtaa aaggaaacaa tgaagttcga atcaaacata tttataatga
      841 tattttaaaa caaaataaac cttacaatac gaagggtgtt attgttcaat aattaatata
      901 gaagatataa catgtatatg gcattaaggc atcgacctta tctgaccagt atacgagtta
      961 tatcttcttt tttatagtgg taaaaagttt aaagtataag gttgaagaag gatgagttta
     1021 aaaatatgtg ttaactgata aaaggggaaa tcatttggtg agttggcatc agactaaaat
     1081 gaatgaagac gaatacgttg gtccatgcgt ggtgtgaatg ttttctaaat ctaactggaa
     1141 atgataattt aataatgtac acttttgatt gtttaaacat gtacaatttt taaaaaccta
     1201 gggataattt tattgacgtg aacaacattg agattatctt tagacataaa tatggatttt
     1261 gaagttacta tatttattag ttgtggttgt taatgtatta attgaattga ttataatgat
     1321 tgtcttataa gatatagaag gggacttaac catttaaaaa ttgaaggaaa ataaaaacca
     1381 gctaacaaaa gtgttagctg gttaaacttt acattattaa aatgttgttt ataagtgtga
     1441 agagtgaccg ccttgcataa cccaatatgt tccgacaacg aaacaaagtg taattacaag
     1501 agcaaagata actttgaatg tttgtaaacg tccatcttta ccttcagtta aatgcatgaa
     1561 cattaataat tgaagtcctg cttggacgaa tgcaaagcca aagataattg tcaacttcgc
     1621 gtggaatgtt aatgacgtgt atagtgttac gtaaactgct aaaagcgtta atacgataga
     1681 tgcgataaat cctacagtat gtttcattat tgtactcatc cgctatacac catccctatc
     1741 atatatacgg cagtaaagat gaaaacccaa acaacatcta agaagtgcca gtataaactt
     1801 actataaata attttggcgc attatatttg tctaatccgc gtcgttggat ttggattaat
     1861 aaacaaatgg cccaaacgat acctagcgat acgtgacaac catgcgttcc taataggata
     1921 aagaaactag accagtaaga accaattgtt gggttaacgc cttctgatgc atagtgtgcg
     1981 aattcataaa tttcgaatcc aacaaagact aaacctaaaa gtaacgtaat gatcatccaa
     2041 aacatcatta acttttgttt ttcttggcgc atgtagtaaa tagcaatacc acatgtgtaa
     2101 gaactgaata ataatgcaaa cgtcattatt aaaacaagag gcaattcaaa taactcagta
     2161 gtcattttac ctgcataatc gccaccatgt tgcaaagtta atagtgtcgc aaatagggta
     2221 ccgaataacg caaattcggc tgtaatgaaa atccaaaagc caagcttatt taattcgcct
     2281 tcatgtgtgc gtgaatcaat agtgtttgta tcatgactca tgacttacag cctccctttc
     2341 tttaatacgc gcttctctta atctagcttc agtttctgca acttcagcag cagggatatg
     2401 atatccgtga tcgatttgga aactgcgata aatcatagta ccaaaaatac cgaataaaca
     2461 aattaatgct ggaattacag tttcgaaaat taagaagaaa ccgccgatag tcataaagat
     2521 accaatccag aatccaacag gagtattgtt tggcatatga atgtctttgt aattatggtt
     2581 gtctaagtaa tgacgaccat gttctttcat atcaacaaat gtgtcgtagt cattccaatc
     2641 tggtgtaatg gcaaagttgt atttaggtgg aattgctgat gcagtagtcc actctagagt
     2701 acgaccaagg ccatcccagt tatctccagt tgcttcacgt ggagatttga agtgactgta
     2761 tacgatacta acaacaagga ataagaatcc gattgccatt aataatgcac cgatagttga
     2821 aattaagttt aataagaacc aaccatctga tggcatataa gtgtataaac gacgtggcat
     2881 accatctaat ccaagaatga attgtggtaa gaaacaaacg ttaaatccga tcatgaagaa
     2941 ccagaagcac catttgttta atgtttcgtt taatttgtaa cccatcatct ttggatacca
     3001 gaagattaaa ccagctaagc aggcaaatac aacaccagta accaatgtat agtggaagtg
     3061 agctactaag aagtacgtat tgtgatattg atagtcagct gatgccattg ctaacattac
     3121 acccgtaaca ccacctaaaa ggaagttagg gataaatgct aatgagaata gcattggtga
     3181 ctcaaatgta atacgtcctt tatataatgt taataaccag ttaaacaatt tcacaccagt
     3241 tggaatacca atcagcattg ttgaaattga gaagaatgag ttgattaacg caccattacc
     3301 cattgtgaag aaatggtgaa cccaaactaa gaaactaagg aacgcgatgc cggcagttgc
     3361 ccataccata ctttgatgtc cgaataaacg cttacgagcg aatgtcggga taatttctga
     3421 gtaaatacca aatgctggaa ggataacgat ataaacttca gggtgccccc atacccagaa
     3481 gaagttagcc caaagcattg gcataccgcc atgtgcaact gtgaagaatg ctgtgtcaaa
     3541 tattctatca gttgtcatta atgctaacgc tactgttaaa ggagggaaag caagaataac
     3601 aattaatgta gtaataaatg ttgttactgt aaacattggc atttgcataa acttcatagt
     3661 tggtgtttta catcttaaaa ttgttacaaa gaagttgata cctgtagcta aggtaccaag
     3721 ccctgaaatt tgtatagcta ttaagtaata gttaacaccc ggaccaggac tgaattcacc
     3781 tgctagtggc gcatagtttg tccaaccagc tgctggtgaa ccaccaataa taaatgacag
     3841 gttgaataaa atcatacctg caaagaatag ccagaaactt acgttgttta atactgggaa
     3901 tgcaacatca cgtgctccaa tttgtaatgg aacaacgata ttccataaac caaagataaa
     3961 tggcattgcc atgaagataa tcatgattac accatgtgta ctaaaaattt cgttatagtg
     4021 gttagattct aaaaatttgt tatcaggtac tgttaattgc gcacgaataa gtaacgcatc
     4081 aataccacca cggacgaaca ttaatacggc acagattaaa tacataatac cgattttctt
     4141 atggtctaca gatgtgaacc attctttgta aagatatttc cataatttaa agtaagtaat
     4201 tactgcgatt aaaccaataa ctaagaatgg ggcaccaatt tgtgccattg taatcatcca
     4261 gttaccttta actagtaatt gatcccatgg aaaattcatt aatgtccacc tccatgatca
     4321 tcattgtctt gatcttgcgc atcttttgaa attttcttca tttctttcgc atttttcgat
     4381 tcatctttct tgaactcatt gttatatggt tcgtcatttc caagaatcat caacttcata
     4441 ccatgtcgtt tatagttcgc atttgtaatt tgagctttac gagcaggtat taatggtttg
     4501 tctgatacat ctttaaacat attttcttca ctagtgaagt ttggatcttt taattcgaaa
     4561 ttgaaacgtt tatatgcata gaagatgtat tctggatcgg ctgctggatc aacaaacgcc
     4621 atatgtgtac cattaaattc taaagcttta ttaggtgtgc ttggtaataa ttgtttatca
     4681 aatgtatctt gatctaacgt tttcttacct ttaacttctt tcacccattt gtcgtagtct
     4741 ttttgactaa cggcatttac tttaaatgtt tgacgtgaga atccttcacc attgaagtta
     4801 gagttacgac ctctgaacgt accagtttga gatgcttcta acgtccaatt cattgtcatg
     4861 ccagtcatgg catatttttg accacctaat tgtggaatcc agaaacttgt cattgtatcc
     4921 atagcttgaa gcttaaatac aacaggacga tctttaggga ttgttaatgt attaacagtc
     4981 tctatatgtt catctggata agcaaagaac catttgtatc ctgcacttac tgcatataca
     5041 accattggat ctttctcact cttcggtggt ttttcgtaat cgtataaagt tttaactgta
     5101 ggaatagcta aagcagcaac gattatgata ggtattacaa accatattgt ttcaatgatg
     5161 gcattatggt gcatcttacc agattcggca ttcttattat aactatactt gtaaataaaa
     5221 atggcgaaca tgccaagtac aacgaaacaa ataacaagca tgaagacgat tgaataaaga
     5281 atcaagaact tctgactact tgctactggc ccttttgcgt tgaaaatttc tatatttgaa
     5341 caaccactaa gtaaaattag tgtgccaaat aatagaagca aagacttaaa ttttgacact
     5401 tttttgacct cctaatacta caaatgtagg gcttaacatt aattttaagt tattacacaa
     5461 tatttacaag ggcttatggg aaaaaaatta ataaaattgt atcaaaaatg ttgataaatc
     5521 aaggtgtgac gtgggttcac acatttgtta aaattatgtg tacattttgt gactaatagc
     5581 gtttttgaaa aaattgcttc atatttaaaa ggaaagttga gaatagcttt caattaaagg
     5641 ttaattgaat gaaaataaaa aaagtttgaa attgtctaat aaattgaaaa tgatggctag
     5701 ttgattgaaa ggaagcgcaa acattttaat aaggaatttg ccaaaagtaa tttatcgtta
     5761 aacaatgaaa agtggaaatt tgtttgttca aaatcaaaac atttttttaa aaagagcagt
     5821 taagttttaa taatttgata ggtagtcctt tggtatacag aaaaaataca atatttgggt
     5881 taaagttgca gatgaagtta gaataacaaa taaaatggta gcaaaacatg ttcgtttgct
     5941 accattttat ttgcagtata gtgatgaggg ctatttaacc tcaatatacc tagtggaaat
     6001 tttaattgca ccatctgaat cagtgacatg atatttaatt tgatatttac cagatttaga
     6061 tgtatcaatt tggccatcga ctttaatttt atcggttaaa tctccatctt ctttatcaaa
     6121 tgcacttatg ccgtttagaa ggttataatc ttgacctttc ttaataacga tatcattagc
     6181 gcctttaatt tgtggtgtag tattcgtcgt tgcatctgca tttaaatttg gtgttactag
     6241 tgtagcagaa acaccgaggg ctgataatga ctgtaatagt ttattcataa tgtaacctcc
     6301 gaatgataag tcatttctga gttagcttta ctatacctta atttat
//
LOCUS       DAMQWL010000125         6298 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.127, whole genome shotgun sequence.
ACCESSION   DAMQWL010000125 DAMQWL010000000
VERSION     DAMQWL010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6298
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.127"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(155..961)
                     /gene="yjbH"
                     /locus_tag="PF788_002314"
     CDS             complement(155..961)
                     /gene="yjbH"
                     /locus_tag="PF788_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease adaptor protein YjbH"
                     /protein_id="HDG6304558.1"
                     /translation="MAGELRIMENKSREDINLSPVSKIEIYSFFDPFSSDCFKLSAIL
                     SKLRIEYNQYIRIRHILNPSLKVLTKCQAQSTSNFDNIALAYKAAELQGRVRAERFIH
                     LMQNEIIPKRDIITESMICDCIQNAGIDLEVFKDDLQKSKLTESLKIDLHIAREMEIE
                     QAPSLVFFSEDVHEEGLKVEGLYPYHIYTYIINELMGKPIEKNLPPKLETYIQQQQLV
                     TMEELLTIYEWPEKLLNKELKKLAIQQKIEKLKYPDGDFWKSKMPKIKSK"
     gene            complement(984..1349)
                     /locus_tag="PF788_002315"
     CDS             complement(984..1349)
                     /locus_tag="PF788_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000214067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin"
                     /protein_id="HDG6304559.1"
                     /translation="MTTTPYDIIGKEALYDMIHYFYTLVEKDERLNHLFPGDFAETSR
                     KQKQFLTQFLGGPNIYTEEHGHPMLRKRHIDFTITEFERDAWLENMQTAINRAAFPQG
                     VGDYLFERLRLTANHMVNS"
     gene            complement(1453..2046)
                     /locus_tag="PF788_002316"
     CDS             complement(1453..2046)
                     /locus_tag="PF788_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDG6304560.1"
                     /translation="MATNHEIEFKQMITASIYNKLQEKYFKDSVLFKQVNYYIDTPDF
                     KLKEHRSALRIRVKDNQYEMTLKTPAKVGLLEYNYIVDIKPEMNLIISNDNLPDDIRQ
                     IIVEQFGVKDTTLSILGALTTYRQETKYKGDLLVLDKSEYFDTTDYELEFEVKDYNQG
                     LQKFQSLLNELNLEHHQPLNKVQRFFKKKETLSNNIN"
     gene            2232..2579
                     /locus_tag="PF788_002317"
     CDS             2232..2579
                     /locus_tag="PF788_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304561.1"
                     /translation="MRLYINEIKIKDDILYCYTEDSIKGLSEVGQMLVDSDNYAFAYT
                     LDDGKAYAYLIFVQETWTMLHENMTKKIIINDELELTEFHQELTYILDNIKGNNNYGK
                     EFVATVEETFDIE"
     gene            2596..3231
                     /locus_tag="PF788_002318"
     CDS             2596..3231
                     /locus_tag="PF788_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HDG6304562.1"
                     /translation="MNQWDQFLTPYKQAVDELKVKLKGMRKQYEVGEQASPIEFVTGR
                     VKPIASIIDKANKRQIPFDRLREEMYDIAGLRMMCQFVEDIDVVVNILRQRKDFKVIE
                     ERDYIRNTKESGYRSYHVIIEYPIETLQGQKFILAEIQIRTLAMNFWATIEHTLRYKY
                     DGAYPDEIQHRLERAAEAAYLLDEEMSEIKDEIQEAQKYYTQKRSKKHEND"
     gene            3248..4057
                     /locus_tag="PF788_002319"
     CDS             3248..4057
                     /locus_tag="PF788_002319"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HDG6304563.1"
                     /translation="MRYTILTKGDSKSNALKHKMMNYMKDFRMIEDSENPEIVISVGG
                     DGTLLQAFHQYSHMLSKVAFVGVHTGHLGFYADWLPHEVEKLIIEINNSEFQVIEYPL
                     LEIIMRYNDNGYETRYLALNEATMKTENGSTLVVDVNLRGKHFERFRGDGLCVSTPSG
                     STAYNKALGGALIHPSLEAMQITEIASINNRVFRTVGSPLVLPKHHTCLISPVNHDTI
                     RMTIDHVSIKHKNVNSIQYRVANEKVRFARFRPFPFWKRVHDSFISSDEER"
     gene            4054..4908
                     /locus_tag="PF788_002320"
     CDS             4054..4908
                     /locus_tag="PF788_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDG6304564.1"
                     /translation="MKFKYHISQQETVKTFLARHDFSKKTVSAIKNNGALIVNDEPVT
                     VRKQLMTNDILEIHLPREIPSVNLIPYARKLEVLYEDAFIIIVTKPNNQNCTPSREHP
                     HESLIEQVLYHCQEHGENINPHIVTRLDRNTTGIVIFAKYGHIHHLFSKVNLKKIYTC
                     LVYGKTHTSGIIEANIRRSKDRIITREVASDGKYAKTSYEVINQNDKYSLCKVHLHTG
                     RTHQIRVHFQHIGHPIVGDSLYDGFHDKIHGQVLQCTQIYFVHPINKNNIYITIDYKQ
                     LLKLFNQL"
     gene            4929..>6298
                     /gene="mgtE"
                     /locus_tag="PF788_002321"
     CDS             4929..>6298
                     /gene="mgtE"
                     /locus_tag="PF788_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HDG6304565.1"
                     /translation="MSMNTDEKERVQEELYDQTLLDQYLENDDIDQFRDEFLALHTYE
                     QSEYFEDTTDENRQKIFQYLSPEEVANFFDQLDIDDDEYELLFDKMNATYASHILEEM
                     SYDNAVDILNELTKPKVASLLTLMNKDDANEIKALLHYDEDTAGGIMTTEYLSLKAHT
                     PVKEALLLVKAQAPDAETIYVIFVVDDDGKLVGVLSLRDLIVAENDAYIEDIMNERVI
                     SVNVADDQEDVAQVMRDYDFMAVPVIDYQEHLLGIITIDDILDVMDEEASEDYSRLAG
                     VSDIDSTNDSIIKTALKRLPWLIILTFLGMITATILGRFEKTLENVALLAAFIPIISG
                     MSGNSGTQSLAVSVRNITTGEINEQSKFRIALREAGSGVLSGVVCSTILFTIIVAIYH
                     QPLLALIVAGSLTCAMTVGTFVGSMIPLLMNKLNIDPAVASGPFITTINDIISMLIYF
                     GLATSF"
BASE COUNT         2145 a          898 c         1112 g         2143 t
ORIGIN      
        1 atttgtataa ttttcgaact ggttaaattc gaaaaatatc actaatatat ttagatcgat
       61 gtgtaacatt acgttctaat aatttaatgt tgcaaaatta agagtcagta aaaagacctc
      121 gttacattta tggtgtacga ggtctttaat ttatttattt tgatttgatt ttaggcattt
      181 tagatttcca gaaatcgcca tctggatatt taagtttttc aattttttgt tgaatggcta
      241 acttctttaa ctctttgttt aaaagttttt ctggccattc ataaatagta agtaattctt
      301 ccatcgttac aagttgttgt tgctgtatat aagtttctaa tttaggagga agattctttt
      361 cgataggttt acccatcaat tcattaatta tataagtata gatgtgatat gggtataatc
      421 cttcgacttt taaaccttct tcatgaacat cttcactaaa gaaaacgaga gaaggggctt
      481 gttcgatttc catttctctt gcaatatgca aatcaatttt caagctttcg gttagtttac
      541 ttttttgtaa gtcgtcttta aatacttcta aatcaatacc tgcattttga atacagtcac
      601 aaatcattga ttctgtaata atatctcttt taggtatgat ttcattttgc attaaatgta
      661 taaatcgttc ggcacgtaca cgaccttgta actcagctgc tttataagct agggcgatgt
      721 tatcaaagtt ggatgtactt tgagcttggc atttcgttaa tacttttaac gaaggattta
      781 atatatgtct gatacgtata tattgattat attcaattct taatttggat aagattgctg
      841 ataatttgaa gcaatcggag ctaaatggat cgaaaaatga ataaatttcg attttactta
      901 caggtgatag attgatatct tcacgactct tattttccat tattcgtaat tctccagcca
      961 tgtttattca cctacaatta attttaggaa ttcaccatat gattagcagt taatcttaag
     1021 cgctcaaata aataatctcc aacaccttgt ggaaacgcag cgcgattaat tgctgtctgc
     1081 atattttcta accatgcatc tctttcaaat tcagtgattg taaaatctat atgtcttttt
     1141 cttagcatag gatgtccgtg ttcttcggta taaatgtttg gaccgcccaa aaactgtgtt
     1201 aaaaattgtt tttgtttacg acttgtttct gcaaaatctc ctggaaacag gtgattaagt
     1261 cgttcatctt tttctacaag ggtgtaaaaa taatgaatca tatcgtataa cgcttcttta
     1321 ccaatgatgt catatggtgt tgttgtcatt taatcaccca ttttcaaaaa tttactgtta
     1381 cgaacttaag ttaatatata actaatataa catgatttta aacatttgaa agaaatatgc
     1441 atatttgcca atttaattta tattgtttga aagtgtttct tttttcttga aaaaacgttg
     1501 aactttattt aaaggttgat gatgttcgag gtttagttcg tttaataaag attggaactt
     1561 ttgtaaacct tgattatagt ctttaacttc gaactctaac tcataatccg tagtatcgaa
     1621 atactcactt ttatctaaaa ccagtaaatc acctttatat ttagtttctt ggcgatatgt
     1681 cgttaatgca ccaagtattg ataaagttgt atcttttaca ccaaactgtt caactataat
     1741 ttgacgaatg tcatctggaa gattgtcgtt tgaaataatc aagttcatct ctggtttaat
     1801 gtcgacgata tagttgtatt ctaatagacc aacctttgct ggtgtcttta aagtcatttc
     1861 atattgattg tctttaactc ttatgcgtag tgcagagcga tgttccttta atttgaaatc
     1921 gggtgtatca atatagtaat tgacttgctt aaaaagcaca ctgtctttaa aatatttctc
     1981 ttgcaattta ttatagattg atgcagttat catttgttta aattctattt catgatttgt
     2041 tgccatgata tgtatacacc tcgtatcaaa ttcaatttat cttaactata ttatgaatga
     2101 caaagttgaa ttttaaaagt aatttccttt atctattatc aatgttaatt tgaccattaa
     2161 aaatagtgtt cgtaagtgtt ttgtattatt gaattgtgtt aaaatgttat ggaataagag
     2221 gaggattaag catgcgttta tatattaatg aaattaaaat taaagatgac atactttatt
     2281 gttatacaga agattctatt aaaggattat ctgaagtagg acaaatgctc gttgatagtg
     2341 ataattatgc ctttgcgtat acattagatg atggtaaagc gtatgcttat ctcattttcg
     2401 tacaagaaac atggacgatg ttgcatgaaa acatgactaa aaaaattatt atcaatgatg
     2461 aactagaatt gactgaattc caccaagaac ttacttatat tttagacaac ataaaaggga
     2521 ataataatta tggtaaggaa tttgttgcaa ccgttgaaga aacattcgac attgaataaa
     2581 gcggggtgaa gcactatgaa tcaatgggat cagttcttaa caccttataa gcaagcggtt
     2641 gatgagttga aagtgaaact taaaggcatg cgcaaacaat atgaagttgg tgaacaagcg
     2701 tcgccaatag aatttgttac tggtcgtgtt aaaccaatcg ctagtattat agataaggca
     2761 aacaaacgac aaataccatt tgataggtta agagaagaaa tgtacgatat cgctggttta
     2821 agaatgatgt gccaatttgt tgaagatatt gatgttgtcg tcaatatttt aagacaaaga
     2881 aaagatttta aagtaattga agaacgagat tatattcgta acactaaaga aagtggttac
     2941 cgctcgtatc atgtcattat tgaatatcca attgaaacat tacaaggcca aaaatttata
     3001 ttggctgaga ttcagattcg tacattagca atgaatttct gggcaacgat tgaacatact
     3061 ttacgatata aatatgatgg tgcttatccg gatgaaattc aacatcgttt ggaaagagcg
     3121 gcagaagcag cgtatttact tgatgaagag atgtctgaaa ttaaagatga aattcaggaa
     3181 gctcaaaaat attacacgca aaaacgttct aaaaaacatg aaaatgatta acgaggtgtt
     3241 ataaatcatg cgttatacaa ttttaactaa aggtgactcc aagtctaatg ccttaaagca
     3301 taaaatgatg aactatatga aagattttcg catgattgag gatagtgaaa atcctgaaat
     3361 tgttatttca gttggtggtg acggtacatt actacaagca ttccatcagt atagccacat
     3421 gttatcaaaa gtggcatttg ttggagttca tacaggtcat ttaggatttt atgcggattg
     3481 gttacctcat gaagttgaaa aattaatcat cgaaattaat aattcagagt ttcaggtcat
     3541 tgaatatcca ttgcttgaaa ttattatgag atacaacgac aacggctatg aaacaaggta
     3601 tttagcatta aatgaagcaa cgatgaaaac tgaaaatggc tcaacacttg ttgtggatgt
     3661 taacttaaga gggaaacact ttgagcgatt tagaggcgat ggattatgtg tatcaacacc
     3721 ttcgggttca acggcttata acaaagcgct aggtggcgca ctgatacatc cttcacttga
     3781 agcaatgcaa attacagaaa ttgcctcgat aaataatcgt gtgtttagaa cggtaggatc
     3841 accacttgta ttaccaaagc atcatacatg tttaatatca ccagttaatc atgataccat
     3901 tagaatgacg atagatcatg ttagtatcaa acataaaaat gttaattcaa tacaataccg
     3961 tgtagcaaat gaaaaagtga ggtttgcacg ttttagacca ttcccattct ggaaacgtgt
     4021 gcacgattct ttcatatcaa gtgatgaaga acgatgaaat ttaagtatca tatatcacaa
     4081 caagaaactg ttaaaacttt tttagcacga catgattttt ctaagaagac agtgagcgcc
     4141 attaaaaata atggcgcttt aattgttaat gatgaaccag tcacagtgcg taagcaatta
     4201 atgacaaatg atatattaga aattcattta ccgcgagaaa taccgagtgt taatttaata
     4261 ccttatgctc gtaagctaga agtattgtat gaagatgctt ttatcatcat agttactaaa
     4321 ccaaacaatc aaaattgtac gccttcgaga gaacatcctc atgaaagttt aatcgaacaa
     4381 gtactatatc attgtcagga acatggtgaa aatattaacc cacatattgt tacgcgtcta
     4441 gatcgtaata caactggtat tgtgatattc gctaaatatg gacatatcca tcatttattt
     4501 tctaaagtaa acttgaaaaa aatatatact tgccttgtat atggtaaaac ccatacatct
     4561 ggtattattg aagctaatat tagacggtca aaggatagga ttataactag agaagttgcc
     4621 tcggatggta aatacgctaa aacatcttat gaagtaataa atcagaatga taaatacagt
     4681 ttatgcaaag ttcatttgca tacgggacgt acacatcaaa ttcgtgtaca ttttcaacat
     4741 attgggcatc caattgtggg agattctttg tatgatggtt ttcatgacaa aattcatggt
     4801 caagtactgc aatgtacgca aatatatttt gttcatccaa tcaataagaa caatatttat
     4861 attacaattg attataagca attacttaaa ttattcaatc aactctaatt cacacagggg
     4921 gtgtaagtat gtcaatgaac acagatgaaa aagagcgtgt tcaagaggaa ttatacgacc
     4981 aaactttatt agatcaatat ttagaaaatg atgatattga tcaatttaga gatgaatttc
     5041 tagcattaca cacatatgaa caaagtgagt attttgaaga tactaccgat gaaaatagac
     5101 aaaagatttt tcaatattta tcacctgaag aagttgcaaa tttctttgat caattagata
     5161 ttgatgacga tgaatatgag ttgctatttg ataagatgaa tgcgacatac gcaagtcaca
     5221 tattagaaga aatgtcatac gacaatgcag tagatatttt aaatgagttg actaaaccaa
     5281 aagttgctag tcttttaaca ttgatgaata aagatgacgc gaatgaaatc aaagcattac
     5341 ttcactatga tgaggatacg gccggcggta ttatgacgac ggagtattta tcacttaaag
     5401 cgcatacgcc tgttaaagaa gcattattat tggtcaaagc gcaagcacca gacgcagaaa
     5461 caatatatgt tatatttgtc gttgatgatg atggtaaatt agtaggtgtt ttatcgctaa
     5521 gagatttaat tgtagctgaa aatgatgctt atattgaaga tattatgaat gaacgtgtca
     5581 ttagtgtgaa tgtagcagac gaccaagaag atgttgctca agttatgaga gactatgatt
     5641 tcatggctgt acctgttata gattaccaag aacatttgct tggtatcatc acgattgatg
     5701 atattttaga cgttatggat gaagaggcta gtgaagacta ctctcgttta gccggggtat
     5761 cagatatcga ttcgactaat gattcaatca ttaaaacagc attaaaacgt ttaccatggt
     5821 tgattatttt aacattttta ggaatgatta ctgcgacaat tttagggaga ttcgaaaaaa
     5881 cattagaaaa tgtagcgcta ctcgcagcgt ttattcctat tattagtggt atgtcaggaa
     5941 attcaggtac acaatcttta gccgtttcag ttcgtaacat tacgacaggg gaaattaatg
     6001 agcaaagtaa atttagaatt gcattaagag aagcaggaag tggtgtatta tcgggtgttg
     6061 tatgttcaac aatattattt acaattattg ttgcaatata tcatcagcca cttttagcat
     6121 taatcgttgc aggaagttta acttgtgcga tgacggtggg gacgtttgta ggttcgatga
     6181 ttccattatt gatgaataaa ttaaatatcg atccagcagt ggctagtgga ccatttatta
     6241 caacaattaa tgatattatt agtatgttga tttattttgg tttagctaca tcatttat
//
LOCUS       DAMQWL010000126         6261 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.128, whole genome shotgun sequence.
ACCESSION   DAMQWL010000126 DAMQWL010000000
VERSION     DAMQWL010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6261
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.128"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            220..2034
                     /locus_tag="PF788_002322"
     CDS             220..2034
                     /locus_tag="PF788_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDG6304566.1"
                     /translation="MNKTKGFTKYKKMRYIPGLDGLRAIAVLGIIIYHLNKQWLTGGF
                     LGVDTFFVISGYLITSLLLKEYDDTGIIKLKSFWIRRLKRLLPAVIVLLMVVGTATLL
                     LKSDNIIRVKHDIIAAIFYVSNWWYIAKDVNYFEQFSFMPLKHLWSLAIEEQFYIFFP
                     VILVTLLLTIKKRYKIGFIFWGVSIISLGLMMFIYSINGDHSRVYFGTDTRLQTLLLG
                     VILAFLWPPFKLKNDPPKVVKYVIDSIGSLSFIVLILLFFIINDETNWIYDGGFYLIS
                     ILTLFIIASVVHPSTWIAKIFSNPVLVFIGKRSYSLYLWHFAVISFVHSYYVDGQIPV
                     YVYFIDISLTIIFAELSYRFIETPFRKEGIKALNWRPSYIPQFIRMAIVVTLLIPFML
                     ILVGAFNKYGKDIIGEKANSFDTTIEDNYLMRIAPIDNIHIDGLVSEKKKESSDVYNN
                     IKPLLIGDSVMVDIGESFKSSVPKSRIDGKVGRQLYQTLPLVKANYSQYKKSSDQVVL
                     ELGTNGDFTVKQLDDLLNQFGKAKIYLVNTRVPRIYEANVNRLLADAAKRKSNVTLID
                     WYKRSQGHSEYFAPDGVHLEYKGVLALKDEILKALKKK"
     gene            2237..4846
                     /gene="clpB"
                     /locus_tag="PF788_002323"
     CDS             2237..4846
                     /gene="clpB"
                     /locus_tag="PF788_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDG6304567.1"
                     /translation="MDINKMTYAVQSALQQAVELSQQHKLQNIEIEAILSAALNESES
                     LYKSILERANIEVDQLNKAYEDKLNTYASVEGDNIQYGQYISQQANQLITKAESYMKE
                     YEDEYISMEHILRSAMDIDQTTKHYINNKVEVIKEIIKKVRGGNHVTSQNPEVNYEAL
                     AKYGRDLVEEVRQGKMDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGL
                     AQRIVKKDVPESLLDKTVFELDLSALVAGAKYRGEFEERLKAVLKEVKESDGRIILFI
                     DEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQK
                     VAVSEPDVEDTISILRGLKERYEVYHGVRIQDRALVAAAELSDRYITDRFLPDKAIDL
                     VDQACATIRTEMGSNPTELDQVNRRVMQLEIEESALKNESDNASKQRLQELQEELANE
                     KEKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQL
                     EKELRELEDNFQDEQGEDTDRMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHL
                     SDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAA
                     SLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDE
                     VEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLENVKETGEIT
                     ESTEKAVMTSLNAYFKPEILNRMDDIVLFKPLSIDDMSMIVDKILTQLNIRLLEQRIS
                     IEVSDDAKAWLGQEAYEPQYGARPLKRFVQRQIETPLARMMIKEGFPEGTTIKVNLNS
                     DNNLTFNVEKIHE"
     gene            complement(4905..5774)
                     /locus_tag="PF788_002324"
     CDS             complement(4905..5774)
                     /locus_tag="PF788_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDG6304568.1"
                     /translation="MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLN
                     VKLFETYKNQIILTEDGHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIA
                     TFIMPKFLKSFFNEHPFIDVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVC
                     EGKIVLIAPNKENNHLLTEASLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSIND
                     VHTSIKLIEMNQGISFLPLYITTNSDYNISVINTKILQAPISFTYIYSKKESPEILVF
                     IKSFKKYIANEQL"
     gene            5884..>6261
                     /locus_tag="PF788_002325"
     CDS             5884..>6261
                     /locus_tag="PF788_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDG6304569.1"
                     /translation="MIRIQDNTIRDGMQQSNVRKSLIIKKEVLKQINKLNINSVEVGM
                     CTTIEDEFNIHQFRDILSPEKELVVLTRLNEKEIKKIVKLKIHNLVVKILLPISDLHI
                     KEKLNFSNKYYIQKIKDCLDILKK"
BASE COUNT         2323 a          781 c         1126 g         2031 t
ORIGIN      
        1 cttcatagtt tttaagttgc cgagttgcat tacaaattgg atttcgaagt aagaatcatc
       61 attggtaatt tttttaattt aacagtattt tagtcaatat gattttgatg atgtcgtaat
      121 tcaataatat acatatgcat ttcaatattc ttttaaacag cataactaaa tttaattaag
      181 catctaagaa gaacagtttt aaaagggaag aatgcaaaaa tgaacaaaac aaagggtttt
      241 acaaagtata agaaaatgag atatattcca gggctcgatg gtttgagggc aatcgctgtt
      301 ctaggaatta ttatttacca cttaaataag caatggttga caggtggctt tttaggtgtg
      361 gatacatttt ttgtgatctc tggttattta attacaagct tattactcaa agagtatgat
      421 gacacaggta tcattaaatt gaaaagcttt tggatacgtc gtttaaaacg tttattacca
      481 gcagtcatag ttttattaat ggttgtaggg acagcaacct tattattaaa atcagataat
      541 atcattaggg ttaaacatga tattattgct gcgatatttt atgtatcaaa ctggtggtat
      601 atagcaaaag atgttaatta ttttgagcaa ttttcattta tgccattaaa gcatttatgg
      661 tctttagcaa ttgaagaaca gttttacata tttttcccag ttattttggt tacattattg
      721 ttaacaatta aaaagcgata caaaatagga tttatttttt ggggagtatc aataatttct
      781 ttagggttaa tgatgtttat ctatagtatt aatggggatc attcacgagt gtattttggt
      841 acagatacta gattacagac attgttactg ggtgttattt tagctttttt atggccaccg
      901 tttaaattga aaaatgatcc acctaaagtt gtaaaatatg ttattgatag cataggtagt
      961 ttatcattta tagtacttat attattattt ttcattatta atgatgagac gaattggata
     1021 tatgatggtg gtttctattt aatatccata ttaacgttat ttattattgc tagtgtcgtt
     1081 catccatcta catggatagc gaagatattt tcaaatccag tgttagtatt tatcgggaaa
     1141 aggtcttata gtttatattt atggcatttt gcagtaatta gtttcgtaca tagttactat
     1201 gtagacggac agatacctgt atatgtgtac tttatagata taagtttaac aattatattt
     1261 gcagagctat catatcgctt tatagaaact ccatttagaa aagaaggtat taaagcttta
     1321 aattggcgac cttcttatat accacaattt ataagaatgg caattgtagt aaccttgtta
     1381 attccattta tgttgatttt agtaggtgca ttcaataaat atggtaaaga cattattgga
     1441 gaaaaagcga atagctttga taccacaatt gaagataatt atttaatgcg gatagcacca
     1501 attgataaca tacacattga tggcttagta agtgagaaga aaaaggaatc ttccgacgta
     1561 tataataata ttaaacctct tttaatcggt gattcagtaa tggttgatat cggtgagtca
     1621 tttaagtcat cagttcctaa gtctagaatt gatggaaaag tagggcgtca attgtatcaa
     1681 accttacctt tagttaaagc gaattattca caatataaaa aatcatctga tcaagtcgta
     1741 ttagaattag gtacaaatgg cgactttact gtcaaacagc tcgacgattt acttaatcaa
     1801 tttggaaaag ccaagattta tttagttaat acacgtgttc caagaattta tgaggcaaat
     1861 gtaaatcgat tattagctga cgcggcgaaa cgaaagtcca atgtcacatt aattgattgg
     1921 tataagcgat cacaaggaca tagtgaatat tttgcaccag acggtgtaca tttagagtac
     1981 aaaggagtcc tagctttaaa agatgaaata ttaaaagcac ttaaaaagaa ataacatatg
     2041 tttaataagt ctagttaatg tgtaacgtaa cattagctag atttttttat tcaaaaaaat
     2101 atttacaaat attaggaaat ttaagtgtaa aagagttgat aaatgattat attgggacta
     2161 taatataatt aaggtcaaag aaagtcaaag tcaaaagtgc aacttgacca actctacaaa
     2221 ttagaggtga aattatatgg atataaataa aatgacatat gctgttcaaa gtgctttaca
     2281 acaagcagtt gaactgagtc agcaacataa attacaaaat atagaaattg aggcaatttt
     2341 aagcgctgcc ttaaatgaaa gtgaaagctt atataaaagt attttagaac gagcaaatat
     2401 tgaggtagat caattaaaca aagcttatga agacaaacta aacacgtatg catctgtaga
     2461 aggtgacaat atacaatatg gtcaatatat tagccaacaa gcaaaccaat tgataactaa
     2521 ggctgaatca tacatgaaag aatatgaaga tgaatatatt tcaatggagc atattttacg
     2581 ttcggcaatg gacattgatc aaacaacaaa acattatata aataataaag tagaagttat
     2641 caaagaaatt attaaaaaag taagaggggg aaatcacgtg acatcacaaa atccagaagt
     2701 taattacgaa gcattagcta aatatggccg cgacttagta gaagaagtta gacaaggtaa
     2761 aatggatcct gttataggaa gagatgaaga aattcgaaat acgattcgta ttttaagtcg
     2821 taaaactaaa aacaaccctg tgctcattgg tgaaccaggt gttggtaaaa ctgcaattgt
     2881 tgaaggatta gcgcaacgta tagttaagaa agatgtgcca gaatcattat tagataaaac
     2941 tgtttttgag ttagatttaa gcgcattagt agcgggcgct aaatatcgtg gtgaatttga
     3001 agagagatta aaagcagtcc taaaagaagt taaagagtct gatggtagaa ttatattatt
     3061 tattgatgaa atccatatgc ttgtaggtgc tggtaaaaca gatggtgcca tggatgcagg
     3121 caacatgcta aaaccaatgt tagcacgagg agagttacat tgtattggtg caacaacttt
     3181 aaatgaatat cgagaatata ttgaaaaaga ttcggcatta gagcgtcgtt tccaaaaagt
     3241 agcagttagt gagcctgatg ttgaagatac aatttcaatt ttacgtggtt taaaagaacg
     3301 atatgaagtg tatcatggtg tgcgtattca agatagagcc ttagttgctg ccgctgaatt
     3361 gtctgatcgt tacatcactg atcgtttttt accagataaa gcgattgatt tagttgacca
     3421 agcatgtgca acaattcgta cggaaatggg atcaaatcca actgaattgg atcaagttaa
     3481 tagacgtgtc atgcaattag aaattgaaga aagcgcactt aaaaatgaat ctgacaatgc
     3541 gagcaaacag agattacaag aactacaaga agagcttgcc aatgaaaaag agaaacaagc
     3601 agcacttcaa tctcgtgtag aatcagaaaa agaaaaaata gcaaatttac aagaaaaacg
     3661 tgcgcaacta gatgaaagta gacaagcgtt ggaagatgca caaacaaata acaatttaga
     3721 aaaagctgct gaactacaat atggaacaat tcctcaattg gaaaaagaac ttagagaatt
     3781 agaggataat ttccaagatg agcaaggtga agatacagat cgaatgattc gtgaagttgt
     3841 aacagacgaa gaaattggcg atattgtcag ccaatggaca ggcataccag tttcaaaatt
     3901 agttgaaaca gaacgtgaaa aattacttca cttaagtgac atcttgcata aacgtgttgt
     3961 aggtcaagat aaagcggttg acctggtttc agatgcagta gttagagcaa gagcaggtat
     4021 taaagatcca aacagaccta ttggtagttt cttattccta ggtccaactg gagtaggtaa
     4081 aactgaatta gctaaatcat tagctgcatc attatttgat tctgaaaaac atatgattcg
     4141 tattgatatg agtgaatata tggaaaaaca tgcagtatca agattgatag gggcacctcc
     4201 aggatatatt ggacatgatg aagggggtca attaactgaa gcggttcgtc gtaatccata
     4261 ctcagttatt ttattagatg aggttgaaaa agcgcatact gacgtcttta atgtattatt
     4321 gcaaatttta gatgaaggcc gtttaactga ttctaaagga cgtagcgttg attttaaaaa
     4381 tactattatt attatgacaa gtaatattgg atctcaagtt ttattagaaa acgtaaaaga
     4441 gactggtgaa attacagaat caacagaaaa agctgttatg acaagtttaa atgcatattt
     4501 caaaccagaa attttgaatc gtatggatga tatcgtatta tttaaaccat tatctattga
     4561 tgacatgagt atgattgtag ataaaatctt aacgcaatta aatataagat tattagaaca
     4621 acgaatctca attgaagttt ctgatgatgc taaagcttgg ctaggtcaag aagcttatga
     4681 acctcaatac ggtgcaagac cattaaaacg ttttgtacaa cgccaaattg aaacaccatt
     4741 agcacgtatg atgattaaag agggattccc agaaggtaca acgattaaag ttaatttaaa
     4801 ttcagacaat aacttaacgt ttaatgttga aaaaattcat gaataaaatt gaaccaagaa
     4861 tgtgatgatt aatcgcattc ttggtttttt agatttgaaa tttattataa ttgttcattg
     4921 gcaatatact ttttaaatga tttaataaac accaatattt ctgggctttc ttttttgctg
     4981 tatatatatg taaatgaaat aggtgcttgt aaaattttcg tgttaataac cgaaatattg
     5041 taatcactat ttgttgttat ataaagaggc aggaatgata taccttgatt catttcgatt
     5101 aatttaattg aagtatgcac atcattgata gatagaaatt gtgctttttc ataaatattt
     5161 aaaatattat ttttaagtga tgaccaatat tctggatggt tatcacttat tattttgtat
     5221 ttttcaaata aagatgcctc agttagaaga tgattattct ctttattggg agcaatcaat
     5281 acaattttac cttcgcatac tttttcagaa tgaacttctc ttagtttagg ttgatttctg
     5341 ctaatcccga tgtcatacgt atgattatta atatcttttt caatattttc atttttgaca
     5401 tgaagagaaa catcgataaa aggatgctcg ttaaagaaag attttaaaaa tttgggcata
     5461 atgaatgtcg cgatatatga agacacgaca acatttaatt tcgattgaaa catcgttttt
     5521 ttaagttgga tatgtttgat gccactttca tattgttcaa taaaactttg cgcaattgga
     5581 agaaatgtat gaccatcttc agtcaagata atttgatttt tataagtttc aaatagtttc
     5641 acattgagat gctgttctaa atttttaatt tgcttatgta tagaaggtat agtgagatta
     5701 atttcttcac tagctaatcg atagtttaac gtcttcgcta aaatgacaaa tgtatagtac
     5761 caatctaaat tcatgaactt acctctttca aaaaagttaa taattcatta gataatattt
     5821 aatttttatt gcataaaaat aatattaata ttatatcaga ggttatcgag ggggtgaagt
     5881 aatatgattc gaattcaaga taatacaata agggatggta tgcaacaaag taatgttcga
     5941 aaaagtctaa ttataaaaaa agaagtattg aaacaaatta acaagttaaa tataaattct
     6001 gttgaagtag gcatgtgtac aactatcgag gatgaattta atattcatca attcagagac
     6061 attttaagtc ctgaaaaaga attagtagta ttgactaggc ttaatgaaaa agaaataaaa
     6121 aaaatagtca aattgaaaat tcataattta gtggtaaaaa tactattgcc aatatctgac
     6181 ttgcatataa aagaaaagct taatttttca aataaatatt atattcagaa aatcaaagac
     6241 tgcttggata tattaaagaa a
//
LOCUS       DAMQWL010000127         6213 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.129, whole genome shotgun sequence.
ACCESSION   DAMQWL010000127 DAMQWL010000000
VERSION     DAMQWL010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6213
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.129"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(117..1898)
                     /gene="recQ"
                     /locus_tag="PF788_002326"
     CDS             complement(117..1898)
                     /gene="recQ"
                     /locus_tag="PF788_002326"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDG6304570.1"
                     /translation="MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSI
                     CYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSN
                     GEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
                     LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFIL
                     DYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDR
                     VKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERD
                     INLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQC
                     SNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTH
                     GLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATE
                     KVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMIN
                     IDGVGSYKLKHYCPAFLETIQNYKAKV"
     gene            complement(1910..3793)
                     /locus_tag="PF788_002327"
     CDS             complement(1910..3793)
                     /locus_tag="PF788_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDG6304571.1"
                     /translation="MGMEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGK
                     STLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQ
                     YEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKEL
                     SGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYF
                     LNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAG
                     AKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKV
                     LIEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTD
                     ETLDRDIRMIDYLREENEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKR
                     LYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQS
                     YWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYE
                     QLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIK
                     EQQ"
     gene            complement(4064..6004)
                     /gene="ltaS"
                     /locus_tag="PF788_002328"
     CDS             complement(4064..6004)
                     /gene="ltaS"
                     /locus_tag="PF788_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyglycerol-phosphate lipoteichoic acid
                     synthase LtaS"
                     /protein_id="HDG6304572.1"
                     /translation="MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNL
                     ILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFST
                     LNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMA
                     ASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALAS
                     EDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLN
                     KLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAI
                     LDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFF
                     KDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDE
                     ALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGF
                     WIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGD
                     FITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNP
                     DFKKVNPSKYKYETGPKANSKK"
BASE COUNT         1913 a         1101 c          857 g         2342 t
ORIGIN      
        1 aactttttta ataaaataat gaataatagg taatctccag ttaagaaata gtgttatttt
       61 accttgaatt caaaaaaaca cccagtaaaa caaggaatgc ttactaggtg tcttcactat
      121 actttggctt tataattttg aatcgtttct aaaaatgctg gacaataatg ttttaatttg
      181 taactaccta cgccatcaat attaatcata tcttgtttcg aagcaggctt acgtttagca
      241 aattcctcca acgtgtaatc agaaaatata cttacaggtg ctatcgttaa tttgtcactt
      301 aactttttac gaacttctac caactgactg aataatactc ggtcaacccc ttcaaccgta
      361 tttataaata ctttttcagt cgctttttgc ttaaatggtg ttgtgaatac ttctacttca
      421 ttactgagta attttttaat tgaagtatca cacattaata tttcgtcatt ttcatttaag
      481 aaccctttga atcttaattc atctattaag tgacttaatt ctgatgttgt gtaacctttc
      541 attaaaccat gggttgaaat ttggtcataa cctttatact taatataatc tgttgactct
      601 cctcttaaca cttgaatgat aacactataa ctctcttgtt gtttcatacg agcgatgcaa
      661 ctaataatca tcttagcttc ttgtgtcata ttatatgatt tatcttgttg aacacaatta
      721 ctacattgtt cacattcttc taatttttca ttcggttcaa aataatggac aattgttgct
      781 tctagacatt tttttgtttt tgtatattga atcattttag ttaacttttc gcccatttta
      841 tctttatagt catcatcagc ttgagagact gttataaaat actcgtgtaa attgatatcg
      901 cgttcgctaa ataacaaaat acattcactt ttcaacccgt cacgacctgc acgacccgct
      961 tcttgataat aagattctaa atctccaggc atattataat gaataacaaa gcgtacattg
     1021 gatttatcaa tacccatacc aaaagcattt gtagcaacga ctactttaac acgatcaaat
     1081 aagaaatcat tctgcgcttc ttctctttct ttattgctca aacctgcatg atatataaca
     1141 ctttcaattt tctgactttc taaggcttct tgaagctctt caacttgctt acgtgtagaa
     1201 caataaataa tacctgcatc ttcatcgtgt gttttaatat aatccaatat aaatttttga
     1261 cgttgataag taggatttac tttaaaaatt aagtttctac gcttagtact cgttttaatt
     1321 tgatcagttt gagcgatatt taacttttct ctaatatctt gctgtacttc aaccgtggca
     1381 gttgctgtca acgctattat tgtaaaatct tgaggtaacg taaatacttt tgaaataaca
     1441 ttttggtaac tcggcctgaa atcatgaccc catttagaaa tacaatgcgc ttcatcaaac
     1501 gcgactaagt gaatctttat acgctgaagc atatttaaaa aatatcggtt ttcaaatcgt
     1561 tctggtgcaa catacaaaaa ttgaatttct ccatttgata atgctttttc aatacgttgt
     1621 tgctcttttt gagtcaaact actatttaaa aaagcagctt gaattcccat cgcttttaat
     1681 tgatccactt gatctttcat taatgatatt agtggactta ttacaattgt tgtaccacct
     1741 aacaataaac ctggtacttg atagcatata gacttacctc caccagttgg taagacacca
     1801 agcacattac gatggtctaa tactttgcta ataatttctt cttgtcctgg tcgaaacgtt
     1861 tcatacccaa agtaatgcga taatgtttgt tgcatcataa attgacccct tattgttgtt
     1921 ctttaatttc ttctaactca ctccatcttg tgatgtctaa atcatattga atttcaagtt
     1981 gttctttttc ttcgtttaat tctttaattt tcccataatc tgcacttgcc tcaatcatga
     2041 gcacatcaat ttcttccatt cttacttccg cttgttctat gcgtttcatc aattgttcat
     2101 attctaattt ttctttatat gataaaccat ttttcttacg tacagttgta gaagatttag
     2161 attgttgctt caatgtggat ttatttttat ctaatgattt tttataactt tcataatctt
     2221 caaaagttcc gataatcttt tccatctgac catcatgaat aaaccaatat gactgtgcaa
     2281 ctttatttaa gaagtagcga tcatggctta cggtaatcac tgtaccaccg aaagtatgaa
     2341 tataatcttc aagtattgtt aaagtctcag tatctaaatc atttgtcggt tcatctaaca
     2401 acagaacatt tggctggtgt acgagtagac gtaataaata caaacgcttt tgctctccac
     2461 cagataattt ataaactttt ttaccatgag ttgcacttgg aaataaaaat cgttcaagaa
     2521 gttgtgtaat agataccgag gttccatctt tttcttttgc gatctcattt tcttctctta
     2581 aataatcaat catacgaata tctctatcca gggtctcatc tgtttgctta aaataagcta
     2641 ctttaaccgt ctgcccagtc ttcaatttac cttcgaattg ttggtcttct ccactcaaaa
     2701 tatttaagag tgttgtttta ccagctccat ttggcccaac aacaccaata cgctcacctt
     2761 tttgaataat ttccgtcaga tgttcaatta atactttatc attaatagcc tttgataagt
     2821 cttctaattc gaacacttgc ttacctaatc ttgaataagc aagattcaat tcacctttat
     2881 cgtctttata ttgctggtta acttcatttt ctaggtcatt aaatcgatta attctagctt
     2941 gttgctttgt agtacgagcc ttagctccag ccctcatcca agcaagttct tccttatata
     3001 aagctcgttg cttttgttgt tgcttttgaa gtgttacttc tctttcagcg cgcatttcaa
     3061 tataagattc atagttacca ggatatgacg ctaacttacc tctgtttagt tcaataattc
     3121 tagtggaaac ttcatttaaa aaatatcgat catgggttac gaataaaaca gtatgaggat
     3181 attgcttcac ataattgatc aaccagctga ttgattcgaa gtctaaatgg ttcgtaggtt
     3241 catctaataa caataaatct ggttgttcta ttaatgtttt agcaagtaca acacgttttt
     3301 gttgtccgcc ggataattct ttaatgtatt tagtagtatc atgtatacct agttttgaga
     3361 ggattgtttt aatttcagcg ttatagtccc aagcatcatg ttgatccata gcatcttgcg
     3421 catccatcat tcgcttgaac aatttatcac tttggtcatc cgcataagct tgtactgcct
     3481 gctcatattg cttgatgatg cgtaaagttg ttgtatcaga acttaatact gcatcaaaaa
     3541 ctgtcatatc ttcattaagg tcctgtttct gagacgaata tcgaattcga tattgatttg
     3601 gatgcataac attggctgta aaatcatcat caataccacc aattactttt aacaacgtac
     3661 ttttccctgt accatttatg cctactaaac ctattttttc accttctgaa attgataaat
     3721 ctaggttatc gaatatagtc ttatcggcat aagatttatt taaatgttca attttatatg
     3781 cttccatacc catcttcctt cttctgttga aatctctacg tacttaaatc agttctatac
     3841 attatacacc tttttgaaat caaaagaaat cgataccgtt aagtgtcata atttaatata
     3901 ttgttgcttc aactataaat aaaacttgtt aaggctttga tgactatgct aatgatcttt
     3961 ataatatacc tttttatcaa cacatataat gtaaaacata atataaaaga acataataaa
     4021 aacccggatt gatattttat caatccgagt tcgtgtttag atattatttt ttagagtttg
     4081 ctttaggtcc tgtttcatat ttatacttcg aaggatttac ctttttgaag tctggatttt
     4141 tgtagaatct aaacaaatca ccattaagca cgttgtcact catttcgaga tccttttcaa
     4201 cttgcttttt attcttttcg aaatcagctg gttgagtagt tatgagttca ttatttttat
     4261 tagaataaat cttaccatta acatatttat aatcttttgt tataaagtca ccatttctga
     4321 atggaactac ttgattatga cctttagaga ataaatcagt accgaacatt aaatagttct
     4381 tcgtatctat accagccaaa tgtaaaattg ttggcattac atcgacttga ccagcatatt
     4441 cattattgat accaccagat ttaccaggga ttttaatcca gaaaccagtt ctgtttaaat
     4501 ctgtaaattt agccggtgtg attttttcac ctaatagttt ttccatggca ttgttatggt
     4561 tttcagagat accatagtgg tcaccataaa tcataatcac tgaattgtca tataatcctt
     4621 ttttcttcaa gtcattaata tattcttcta atgcttcgtc taaataacgt gctgtttgaa
     4681 tataaccatc aactgttgca tcacctgtgt ttgatttctc aatagttgca tccttttcat
     4741 ctaatgtgaa tggatagtgg ttagtcaatg taattaaatg agaatagaat ggtgatttca
     4801 tcttagcttg ataattagca gaatctttaa agaaaatttt gtctttcaag cctaagttta
     4861 caacgttttt atctgacatg tcatagtatg ttgcatcata gaatttatcg ataccaaagt
     4921 gtttatatac ttggtctctg ttccagaatg ttttatagtc accgtgcatg acatcagatt
     4981 tgtagccttg cttttgatct aaaattgctg gtaatgactg atacgtatta tctcctttta
     5041 atgaaaaggc agaaccttgc ggtaaaccgt ataaactgtt atccattgta aattcagagt
     5101 cagatgtttt accttgacct gtttgatgga aaaagttagg gaagtatgtg aattgctctt
     5161 tcccacttga taatttgttt aaaaacggtg ttacttcttt accattaacc tttttattaa
     5221 ttaagaaggt ttggaaactt tctaaatgaa tcttaataat atttttcttc tttgccaccc
     5281 cataatattc tgggttaggc tctgtttgac gttgtttcgt ataatttaat acttttgtta
     5341 agtcatcttc agatgctagc gctttttgtt gattattttc gatagtttta acaccatcgt
     5401 atactgtaaa gttataaggt cctaaatatt tcactaaata tttatggtca aatgtacgtg
     5461 ttaataattc tggtctgtca gtttcagcaa aagctaagtt taagaagaat aatgctactg
     5521 aagccgccat tacgacagga acaaatttct tactaaatgc ttttgtgtct aaccattttg
     5581 ttttaaatat taaaatgaat aagtaaacta acgtatcaat gaaataaaca aagtcatacc
     5641 atttgaatga tgcactaacc gcaccaccca tagattctac gttacctact tggtttaaag
     5701 tactaaacgt taaaaaatca gagaagaatc taaagtacac aacattggca tataatagga
     5761 acgtcaataa gaagccgcct atgaacatga accaaaatgc ttttttgcct ttaaagaata
     5821 ggaacacact taaaaccagt gctactaaac tataaggatt catcaataat attaagtttt
     5881 gtactaaacc tttaacacct aaagaaaaat caacataata agaaaaatac gtcttcaagg
     5941 taatcgttat tacggttaat aagaagaacg caaaaagact aattttcttt ttttgtgaac
     6001 tcatgattct ttcccccgtt atttagataa taaatcttgc gaaagtactt gaataaatta
     6061 gatattaaca ttatgtagtt aattaataag tgcgtttaaa agttaacatt gtcataatta
     6121 tagtaattac tttcagattc aagtttataa ttttcgttat ttgtagcttt caactttgat
     6181 ttaacaagta ttttgggcta caactcatat ttg
//
LOCUS       DAMQWL010000128         6166 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.130, whole genome shotgun sequence.
ACCESSION   DAMQWL010000128 DAMQWL010000000
VERSION     DAMQWL010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6166
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.130"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            14..1567
                     /locus_tag="PF788_002329"
     CDS             14..1567
                     /locus_tag="PF788_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDG6304573.1"
                     /translation="MSEEKHVVEHEQQKKEKTKKQYKPFWIVMSFIILIVVLLLPAPS
                     SLPIMAKAVLAILAFAVIMWVTEAVSYPVSATLIIGLMILLLGFSPVQNLGEKLGNPK
                     SGSAILAGSDLLGTNHALSLAFSGFATSAVALVAAALFLAAAMQETNLHKRLALLVLS
                     IVGNKTRNIVIGAIIVSIVLAFFVPSATARAGAVVPILLGMIAAFKVSKDSKLASLLI
                     ITSVQAVSIWNIGIKTAAAQNIVAINFINHQLGFDVSWGEWFLYAAPWSIVMSVALYF
                     IMIKVMPPEINTIEGGKDLIKEELHKLGPVSPREWRLIVISMLLLLFWSTEKVLHPID
                     SASITIIALGVMLMPKIGVMTWKHVENKIPWGTIIVFGVGISLGNVLLKTGAAQWLSD
                     QTFGVLGLKHLPIIATIALITLFNILIHLGFASATSLSSALIPVFISLTSTLHLGDQS
                     IGFVLIQQFVISFGFLLPVSAPQNMLAYGTGTFTVKDFLKAGIPLTIVGYILVIVFSM
                     TYWKWLGLL"
     gene            1653..3026
                     /locus_tag="PF788_002330"
     CDS             1653..3026
                     /locus_tag="PF788_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HDG6304574.1"
                     /translation="MAIAVLLNRMFRMEHNPLFEYIYQQKKDIDACYFIIPEEDMSSA
                     SDLKAQFYRGTLQRFYQSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLE
                     EYDILHQRSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRD
                     VYHYDLKSFEDFVIASPDDLVFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPE
                     VLTSQLSVALAYGLLDIIEIFNDLLARYDEDEANYEAFIRELIFREFYYVLMTQYPET
                     SYQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQF
                     LTKDLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERF
                     DAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVL
                     ATFKALD"
     gene            complement(3181..3465)
                     /locus_tag="PF788_002331"
     CDS             complement(3181..3465)
                     /locus_tag="PF788_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000154460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304575.1"
                     /translation="MTINIIVLIVSIIVFQLIIGHIWHDIGLSYLRSILLMMLPFGLG
                     VFIQQVSYYERQYPKWQVPQNIKVRLKYIYLATFLEYVVLYLTLFTDILR"
     gene            complement(3462..4079)
                     /locus_tag="PF788_002332"
     CDS             complement(3462..4079)
                     /locus_tag="PF788_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HDG6304576.1"
                     /translation="MQSRYIARIYFLILFIVSLFETKIFQFMTLNLFLAYIPFELSLL
                     LRLFKPNKKYEWPLFIIYSFIFVLLLPNTFYMVTDLIHLNQFQFNFYAGLNLSEWKYF
                     TYLLLGVFLAVYVMILIYFEILTLTSHRWLNRLIVVVLMFLNGFGIYIGRFLRLHSVY
                     FFNEPLHVLNHILESLTLKTAMFVCFMVVMQAAILLFGKGVRLNK"
     gene            complement(4265..4687)
                     /locus_tag="PF788_002333"
     CDS             complement(4265..4687)
                     /locus_tag="PF788_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HDG6304577.1"
                     /translation="MKLQKSNHTILLVLEKGEDIVECITTFADDQDLTFTSVSGIGAC
                     DDVVLKFFNLTTKQYEEKHITEPLELTSLLGNISRLDNGHFAHLHATFGTQSYETFSG
                     HLAKAIVSATAEIILTVTDLDIQRSFKDAVGLNLLDPQ"
     gene            4896..6062
                     /gene="norA"
                     /locus_tag="PF788_002334"
     CDS             4896..6062
                     /gene="norA"
                     /locus_tag="PF788_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter NorA"
                     /protein_id="HDG6304578.1"
                     /translation="MNKQIFVLYFNIFLIFLGIGLVIPVLPVYLKDLGLTGSDLGLLV
                     AAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGG
                     MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFY
                     FAGALGILAFIMSIVLIHDPKKSTTSGFQKLEPQLLTKINWKVFITPVILTLVLSFGL
                     SAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL
                     LYSVVVLILLVFANDYWSIMLISFVVFIGFDMIRPAITNYFSNIAGERQGFAGGLNST
                     FTSMGNFIGPLIAGALFDVHIEAPIYMAIGVSLAGVVIVLIEKQHRAKLKEQNM"
BASE COUNT         2062 a          884 c         1123 g         2097 t
ORIGIN      
        1 aggggtgact gttatgtcag aagaaaaaca tgtagttgaa catgaacaac aaaagaaaga
       61 aaagacaaaa aagcaataca agccattttg gattgtcatg agttttataa tacttatagt
      121 tgtactatta ctcccggcac cttcaagtct gccgataatg gctaaggcag tactagctat
      181 tttagctttt gcagttatta tgtgggtaac ggaagctgta tcatatccgg tgtcagcaac
      241 tttaattatt ggcttaatga tattactttt aggatttagc cctgttcaaa atttagggga
      301 gaagctaggt aatccgaaaa gtggcagtgc tattttagct ggaagtgacc ttctaggaac
      361 taatcatgca ttatcattag cgtttagtgg atttgcaact tcagctgtag ctctcgttgc
      421 agctgcatta tttttggctg ctgctatgca agaaacgaat ttgcataaaa gactagctct
      481 tttagtgtta tcaattgttg gtaataaaac tagaaatata gttattggag caattatcgt
      541 ttcaattgta cttgcatttt tcgttccttc tgcaacagct agagcagggg cagttgtacc
      601 aatcttgctg ggtatgattg cggcatttaa agtttccaaa gatagcaagt tagcgtcttt
      661 attaataatt acttcagtac aagctgtgtc aatttggaat attggtatca aaacggcggc
      721 agcacaaaat atcgtagcga ttaattttat aaaccatcaa ttaggatttg atgtttcatg
      781 gggcgagtgg ttcttatatg cagcgccttg gtccatagtt atgtccgtag ctttatattt
      841 catcatgatt aaagtgatgc ctccagaaat taatacaata gaaggtggta aagatttaat
      901 aaaagaagaa ttgcataaac ttggccccgt tagcccacgt gaatggcgtt taattgttat
      961 atcgatgtta ttattactgt tttggtcaac tgaaaaagta ttacatccga ttgactctgc
     1021 atccattact attattgctt taggtgttat gttaatgccg aaaattggtg tcatgacatg
     1081 gaaacatgtt gaaaataaaa taccatgggg aacaattatc gtgtttggtg taggtatttc
     1141 actaggtaac gttcttttga aaacaggtgc agctcaatgg ttaagtgatc aaacttttgg
     1201 tgttttaggt ttaaaacatt tacctattat cgcgacaatt gcgcttatca cgctttttaa
     1261 tatattgatt catttgggct ttgcgagtgc aacaagttta tcatcagcgt taatacctgt
     1321 ttttatttcg ctaacctcta cgttacactt aggagaccag tctataggat ttgttttaat
     1381 tcaacaattt gttattagtt ttggtttctt attacctgtt agtgcacctc aaaatatgtt
     1441 ggcttatggc actggtactt ttacggttaa agatttcttg aaggcaggta taccattgac
     1501 aattgtaggg tatattctag tgatagtttt tagcatgact tattggaaat ggttaggttt
     1561 gctttaatta aaaatataaa taagaatcta ggttatttta aagtgacaaa aagcttaata
     1621 aaataaaaag ataattgaag ggtgttttgt ttatggcaat tgctgtgtta ttaaatcgaa
     1681 tgtttcgaat ggaacacaat ccattatttg aatatattta tcaacaaaaa aaagacattg
     1741 atgcatgtta ttttatcatt ccggaagagg acatgtcttc agcttctgat ttgaaagcac
     1801 agttttatcg cggtactttg cagcgctttt accaatcgtt gcacgcagaa aagcttacac
     1861 cttatgttat gtcttatgac gatatcattt cattttgtaa agaaaacaat atctctgaag
     1921 tagtgactgc gggtgatatt atgagttatc atcttgaaga atatgatatt ttacatcaac
     1981 gttctttatt caatgaagca cgcattgccg ttactttgat acgtgggaat cattacttta
     2041 aagcgagtaa aacaatgaat caacaagggg agccatacaa tgtttttact agtttctata
     2101 aaaaatggcg accttacttg aggcatagag acgtatatca ctatgattta aaatcattcg
     2161 aagactttgt cattgcatca cctgatgatt tagtgtttga tgacatagca tttggatcct
     2221 cacaaataat tgaacagaat aaatggcaac attttttaga tcaagatata cagaattacg
     2281 aaagcggaag agactattta cctgaagtat taacaagtca gctaagtgtt gctttagcat
     2341 atggattatt agatattatt gaaattttta atgatttatt ggcgcgttat gatgaagatg
     2401 aggcaaacta tgaagcattt atacgtgaac tcatttttag agaattttat tatgtgttaa
     2461 tgacacagta tcctgaaacc tcataccaag ctttcaaacc taaatatcga cagataaaat
     2521 ggtcgcaaaa tgaagcggat tttaatgcat ggtgcgaagg gcaaacagga tttccaatca
     2581 ttgatgcagc aataatggaa ttgacacaaa ctggttttat gcataatcga atgagaatgg
     2641 ttgtgtcgca atttttaacc aaagatttat ttatagattg gacatgggga gaaaaattct
     2701 ttagaaagca ccttattgac tatgatgcag catcaaatat tcatggatgg caatggtctg
     2761 cttctacagg tacggatgca gtgccgtatt ttagaatgtt taatccaata agacagagtg
     2821 aacgctttga tgctaaagct ttgtatatca aaacatatct tccgattttt aatcaaattg
     2881 atgcaaaata tttgcatgat acacaacgca atgagtccaa cctttttgaa caggggattg
     2941 aattaggtag tcattatcca agacaaatgg tagatcatca agaaaaacgt acacaagttt
     3001 tagctacatt taaagcgcta gactaattcg gctcaattga tagatctggc atgagtaaaa
     3061 tctggagcag aatataaagt tcttaagcaa tataaataag ccaatttcta ttattgatgt
     3121 gatagaaatt ggctttcctc aaatatataa gttgtattta gttttcttat taatttgatg
     3181 ttatcttagt atgtccgtaa ataaagtgag gtatagtacg acatactcta aaaacgtagc
     3241 gagataaata tatttcaatc taacttttat gttttgaggc acttgccatt taggatattg
     3301 tcgttcgtaa tacgacactt gttgtataaa tacacctagt ccaaatggca gcatcatgag
     3361 taagatactt cttaaataac ttaaaccaat atcatgccat atgtgtccaa taatcaattg
     3421 aaagacaatg atagatacta ttaaaacgat tatatttatt gtcacttgtt caaacgcact
     3481 ccttttccaa ataatagaat tgctgcttgc atgacaacca taaaacatac aaacatagca
     3541 gttttaagcg ttagactttc tagaatgtga tttagaacat gtaagggctc attaaagaaa
     3601 taaacggaat gtaagcgtaa gaaacgacca atataaattc cgaatccatt taaaaacatt
     3661 agcacgacaa caattaatct attaagccaa cggtgagaag tcaatgttag tatttcaaaa
     3721 tagattaaaa tcatcacata aaccgctaag aagacaccaa gcagtaaata ggtaaagtat
     3781 ttccactcac ttaaatttag tcctgcgtaa aagttgaatt gaaattggtt caaatggatt
     3841 aaatcagtta ccatataaaa tgtatttggt aaaagtaaca caaatataaa actatatatg
     3901 ataaagagtg gccattcata ctttttattc ggtttgaata atcgtaataa tagactaagc
     3961 tcaaaaggta tatatgctaa aaacaaattt aaagtcataa attgaaaaat tttagtctca
     4021 aaaagggaga cgataaataa aattaaaaag taaattctag cgatgtatcg agattgcatc
     4081 aataataaac actactttct aatgaaaaag ttattcattc aaatgtgata gttataaacg
     4141 cattcaattc ctaattaaaa atttaattta actcgttgaa gtatattaat aaacgagaat
     4201 gcatttatga ttaagcactt atgataactt gtaataaaat ttgattcaac taaaaagtaa
     4261 agtgctattg aggatcaagt aaatttaaac cgactgcatc tttgaatgaa cgttgaatgt
     4321 ccaaatcagt tacagtaaga atgatttcag cagttgcaga aacaattgct ttagcgagat
     4381 gtccgctaaa agtttcatat gattgagtac cgaaagtagc atgcaaatgt gcaaaatgac
     4441 cattgtctag acgagaaata ttacctaata agctcgtcaa ttccagtggc tcagtaatat
     4501 gtttttcttc gtattgtttc gttgttaaat tgaaaaattt taatacaacg tcatcacatg
     4561 caccaatgcc gctgacagat gtaaatgtta agtcttggtc atctgcaaag gttgttatac
     4621 attcaacgat atcttctcct ttttccaaca ctagtagtat agtatgatta cttttttgca
     4681 atttcatatg atcaatcccc tttattttaa tatgtcatta attatacaat taaatggaaa
     4741 atagtgataa ttacaaagaa aaaatattgt caaatgtagc aatgttgtaa tacaatatag
     4801 aaacttttta cgaatattta gcatgaattg caatctgtcg tggaaaagaa gaataacagc
     4861 tttaagcatg acatggagaa aaaagaggtg agcatatgaa taaacagatt tttgtcttat
     4921 attttaatat tttcttgatt tttttaggta tcggtttagt aataccagtc ttgcctgttt
     4981 atttaaaaga tttgggatta actggtagtg atttaggatt actagttgct gcttttgcgt
     5041 tatctcaaat gattatatcg ccgtttggtg gtacgctagc tgacaaatta gggaagaaat
     5101 taattatatg tataggatta attttgtttt cagtgtcaga atttatgttt gcagttggcc
     5161 acaatttttc ggtattgatg ttatcgagag tgattggtgg tatgagtgct ggtatggtaa
     5221 tgcctggtgt gacaggttta atagctgaca tttcaccaag ccatcaaaaa gcaaaaaact
     5281 ttggctacat gtcagcgatt atcaattctg gattcatttt aggaccaggg attggtggat
     5341 ttatggcaga agtttcacat cgtatgccat tttactttgc aggagcatta ggtattctag
     5401 catttataat gtcaattgta ttgattcacg atccgaaaaa gtctacgaca agtggtttcc
     5461 aaaagttaga gccacaattg ctaacgaaaa ttaactggaa agtgtttatt acaccagtta
     5521 ttttaacact tgtattatcg tttggtttat ctgcatttga aacattgtat tcactataca
     5581 cagctgacaa ggtaaattat tcacctaaag atatttcgat tgctattacg ggtggcggta
     5641 tatttggggc acttttccaa atctatttct tcgataaatt tatgaagtat ttctcagagt
     5701 taacatttat agcttggtca ttattatatt cagttgttgt cttaatatta ttagtttttg
     5761 ctaatgacta ttggtcaata atgttaatca gttttgttgt cttcataggt tttgatatga
     5821 tacgaccagc cattacaaat tatttttcta atattgctgg agaaaggcaa ggctttgcag
     5881 gcggattgaa ctcgacattc actagtatgg gtaatttcat aggtccttta atcgcaggtg
     5941 cgttatttga tgtacacatt gaagcaccaa tttatatggc tataggtgtt tcattagcag
     6001 gtgttgttat tgttttaatt gaaaagcaac atagagcaaa attgaaagaa caaaatatgt
     6061 agcataagta ttttggtgta tattgatata aagtaaagcg taatattatg aatgattagc
     6121 atcgtttttc ttatgaattt tattaagaaa attcgatgct ttacat
//
LOCUS       DAMQWL010000129         6150 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.131, whole genome shotgun sequence.
ACCESSION   DAMQWL010000129 DAMQWL010000000
VERSION     DAMQWL010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6150
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.131"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..726
                     /locus_tag="PF788_002335"
     CDS             <1..726
                     /locus_tag="PF788_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E domain-containing protein"
                     /protein_id="HDG6304579.1"
                     /translation="VNELTEFGGEKIPQGHKDIFDPNLPTDQTEKVPGKPGIKNPDTG
                     KVIEEPVDDVIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTIT
                     TPITVNPLTGEKVGEGQPTEEITKQPVDKIVEFGGEKPKDPKGPENPEKPSRPTHPSG
                     PVNPNNPGLSKDRAKPNGPVHSMDKNDKVKKSKIAKESVANQEKKRAELPKTGLESTQ
                     KGLIFSSIIGIAGLMLLARRRKN"
     gene            1110..2303
                     /locus_tag="PF788_002336"
     CDS             1110..2303
                     /locus_tag="PF788_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6304580.1"
                     /translation="MLYLEVLKNRNFTYLLIGNFLRRSCFVLFSLQIIWFTVELTNQS
                     SLKLSMMVMSQTLPFIIFGIFGGAYSDKHNKKKILYLSDLILSLIIIIIPLLAITSNL
                     NYLTLLTISTAITIINCYTDPAFRAILPEIIDEEHLATSNALIDSLQRGSNIILPALI
                     GVIVILVGNVGVFFICSILLFLGFIFNALLKYTNNNMIDRHSKEDFSETWEFLKQSKE
                     IPFIIIIQFACILINTGLWRVVLPLFISNILKEGVGVYGLATSCLGIASLLMSLIMGL
                     LSEKRLIFKFSIGVLVWGIGLSIINVFPSVAILYIGATLLGLGQSIEGLTRSVAIQIK
                     TPNHLMGKVFSISSTSNYAADTLSLGLISIIIPLLSLSNIFILGGVIISILSLAGLKF
                     VKKSM"
     gene            2284..2517
                     /locus_tag="PF788_002337"
     CDS             2284..2517
                     /locus_tag="PF788_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304581.1"
                     /translation="MLRSLCKHYRILINAIKVGIEMKYKISLAYNLAIIIGSLIILCI
                     LISRGYDIYVILIPILTILASLINLFCDIKKHK"
     gene            complement(2625..2933)
                     /locus_tag="PF788_002338"
     CDS             complement(2625..2933)
                     /locus_tag="PF788_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304582.1"
                     /translation="MTVNIVFSIVFCISMVILGIYVAITKDFTLISFINQTAIADKHK
                     NQIAYIFTLCISLSAVFLMSSILSFEYDFIALAFLFLTIALLLIALFYVCFYKITKYP
                     "
     gene            complement(3077..3343)
                     /locus_tag="PF788_002339"
     CDS             complement(3077..3343)
                     /locus_tag="PF788_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304583.1"
                     /translation="MKGSKQILLIMGIISLIVLFIFTLFIMAQYAKHYEQKSDSSNAH
                     TLNSSSAIIEQHTMSNLASLDLYAPVRNITSSRDIHPIYFMTKD"
     gene            complement(3627..5435)
                     /locus_tag="PF788_002340"
     CDS             complement(3627..5435)
                     /locus_tag="PF788_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDG6304584.1"
                     /translation="MHFHTHLLYNTCEKYCLGAVFFYFWGVFLYNSLHKCKGFSFHVL
                     LSLTEILKGCLATMDKELWIERANDSLVKHFYEQQSDIEQREGFESKLTFGTAGIRGK
                     FGLGEGRLNKFTIEKLALGLARYLNAQTNSPTIVIHYDIRHLSTEFAQIIANVLANHQ
                     ITVYLPDTYKTTPELSFAVRNLNTTAGIMITASHNPKDYNGIKVYGSDGAQLSTDASE
                     LASRYIEEVGDPLQIDIPISKQNTSYIKPFPKSVTDDYMKHIQNMIGYIPKSDLQVVF
                     TSLHGTSVPIVPELLQSLNFNQFNLVEAQCKPDPNFSSVQSANPEDHRAFDQAVELAN
                     KSHADLLISTDPDADRLGIAERDAHGHITYFNGNQIGALLLNYRIQQTSQLRHRLMIQ
                     SIVSSELTKSLARYNNVEYKEVLTGFKFIAQEIRQLDDHQNMIFAFEESYGFLSEPFV
                     RDKDAVQIVPLIIKYASELKLYGKTLKDELEQIYQTVGRHEDTLFSHTLEGFEGKKKI
                     NAIMTKFRSNPPQEIQGLKVKAIEDYLTSEVYHLDKDTTSQINSPKSNVIRVLFDEGF
                     IALRPSGTEPKIKLYVSLKCPNFDDVAQKINAMIFS"
     gene            5552..5944
                     /locus_tag="PF788_002341"
     CDS             5552..5944
                     /locus_tag="PF788_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(deoxy)nucleoside triphosphate
                     pyrophosphohydrolase"
                     /protein_id="HDG6304585.1"
                     /translation="MKKVINVVGAIIFSDNKILCAQRSEKMSLPLMWEFPGGKVEKNE
                     TEKDALIREIREEMKCDLIVGDKVITTEHEYDFGIVRLTTYKCTLNKELPTLTEHKSI
                     EWLSINELDKLNWAPADIPAVNKIMTEG"
     gene            5946..>6150
                     /locus_tag="PF788_002342"
     CDS             5946..>6150
                     /locus_tag="PF788_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304586.1"
                     /translation="MSRLLNDFNQSLHKGFIDKHISHKGNYTPKLLVNNKNEKVLSTI
                     IDELQKCETFYFSVAFITESGLAS"
BASE COUNT         2183 a          868 c         1040 g         2059 t
ORIGIN      
        1 gttaatgaat taacagaatt cggtggcgag aaaataccgc aaggtcataa agatatcttt
       61 gatccaaact tacccacaga tcaaacggaa aaagtaccag gtaaaccagg aatcaagaat
      121 ccagacacag gaaaagtgat cgaagagcca gtggatgatg tgattaaaca cggaccaaaa
      181 acgggtacac cagaaacaaa aacagtagag ataccgtttg aaacaaaacg tgagtttaat
      241 ccaaaattac aacctggtga agagcgagtg aaacaagaag gacaaccagg aagtaagaca
      301 atcacaacac caatcacagt gaacccatta acaggtgaaa aagttggcga gggtcaacca
      361 acagaagaga tcacaaaaca accagtagat aagattgtag agttcggtgg agagaaacca
      421 aaagatccaa aaggacctga aaacccagag aagccgagca gaccaactca tccaagtggc
      481 ccagtaaatc ctaacaatcc aggattatcg aaagacagag caaaaccaaa tggcccagtt
      541 cattcaatgg ataaaaatga taaagttaaa aaatctaaaa ttgctaaaga atcagtagct
      601 aatcaagaga aaaaacgagc agaattacca aaaacaggtt tagaaagcac gcaaaaaggt
      661 ttgatcttta gtagtataat tggaattgct ggattaatgt tattggctcg tagaagaaag
      721 aattaaaata attcataatt taaataatag ttgatttgca ttcactatat ttagtttgtt
      781 aaaaacaacc tagaatatga tgagaatgat atacacccca aaagttggat tgaaagacct
      841 aactttaagg ggtgtatttt tgttataaat ttgatttttt tgataatatt ttcatattta
      901 atataatcat aattagtaga atataacctc tgagtagtca ttttgggggt tatgtatggt
      961 gtttcaagta gtatgtatat ttcgaaataa ttgatattta actgactaaa ttatattaga
     1021 attaattgcg ctttggataa agagagttta gaagaaggtc taaaaaagct ggtggatgca
     1081 ttcaattatt tttatgagag gtgataaata tgttgtattt agaagttttg aaaaatagaa
     1141 actttacata tttattgatt ggtaatttct tacgtcggag ttgttttgtg ctgttttcgt
     1201 tacaaataat ttggtttact gttgaattga caaaccaatc atctttaaaa ttatcaatga
     1261 tggttatgag tcaaacactt ccatttatta tatttggtat tttcggtggc gcatattctg
     1321 ataaacataa taaaaagaaa atactttatc tatctgatct tatactaagt ttgattataa
     1381 taattattcc tttacttgca ataacatcaa atttaaatta tctgacgctt ctaaccatat
     1441 ctacagctat caccattatt aactgctata cggatcctgc gtttagggca attcttcctg
     1501 aaattattga tgaggagcat ttagcaacaa gtaatgcgtt aatcgatagt ttgcaaagag
     1561 gctcaaatat tattttacct gctttaattg gtgtcattgt aatactagtt ggtaatgttg
     1621 gcgtcttttt tatttgtagt atattgctat ttttaggatt tatttttaat gcacttttaa
     1681 aatatacaaa taacaacatg attgatagac actcaaaaga agatttttct gaaacttggg
     1741 aattcttgaa acaatctaaa gaaattccat ttattataat catccaattt gcctgcatat
     1801 tgattaatac tggcctttgg cgtgttgtat taccattgtt tatttccaat atattaaaag
     1861 agggcgttgg tgtatatgga ctagctacat catgtttagg tatagcatct ttattaatgt
     1921 cattgattat gggtttgctg tcagaaaagc gattaatctt taaatttagt attggtgttt
     1981 tagtttgggg aattggctta tcgattatta atgtgtttcc aagtgtggcg atattatata
     2041 taggtgcaac attattggga cttggacaat ctatagaggg actaacaaga tcagttgcca
     2101 ttcaaataaa aacgccaaat catttgatgg ggaaagtatt tagtatctca tctacatcga
     2161 attatgcagc ggatacattg tctttaggac tgataagtat aattatacct ttactaagct
     2221 taagtaatat atttatatta ggaggtgtaa ttatttcaat acttagctta gctgggttaa
     2281 agtttgttaa gaagtctatg taaacattat agaattttaa taaatgctat taaggtggga
     2341 attgaaatga aatataaaat tagtttggct tataatttag caattataat agggtcgcta
     2401 attatattat gtatactaat atctagaggt tatgatattt atgtaatctt gattccaatt
     2461 ttgactattt tagctagttt aatcaatttg ttttgtgata ttaaaaagca taaatgattc
     2521 tatattaatg caactttgta ttcgtacaag gttgtatttt tttcgcaaac aattacttac
     2581 tgacagcgca tcaataaatc taaccaacac actatcacaa acatttatgg gtattttgta
     2641 attttataaa agcaaacgta gaataatgcg ataagtaata atgctatcgt taaaaataag
     2701 aatgctaatg caataaaatc atattcaaag cttagaattg aagacattaa aaatactgca
     2761 ctcaaactta tacatagcgt aaatatatat gcaatttggt tcttgtgttt atctgcaatg
     2821 gccgtttgat ttataaaaga gattagtgtg aaatctttag ttattgcgac ataaatgcct
     2881 aatataacca tacttatgca gaatacgata ctaaatacga tgttgacggt cattgttgca
     2941 ccttcctgat agaatataat gtactgtctt ttagtaatgg atgcgtttct tatatatgta
     3001 tgtttctaaa aaacagtacg tttttatcat tttttaattt attagttgaa tgaatggggt
     3061 tatgaaaaag gaagttttaa tcttttgtca tgaaataaat gggatgaata tcacgactag
     3121 aagtaatgtt acgaacagga gcgtataaat ctagagacgc taaattcgac atagtatgtt
     3181 gctcaattat ggctgatgat gaatttaaag tatgtgcgtt ggaactgtcg gatttttgtt
     3241 cataatgttt tgcatattgc gccatgatga atagtgtaaa aataaataaa acaataagag
     3301 atataatgcc cataatcaaa agtatttgtt tagagccttt cattatttca catcctttct
     3361 aaaatatatt tgtaactaaa tttaaaatag ttatttttgt aattctaaac ctttttcatc
     3421 gcgaaaacaa ttaaataggt cgcggtatta attattatat tattaccgct taatatgaaa
     3481 aatacatgaa aattaatttt ctaatatact tttgaaaaat tattacaaat tagccccttc
     3541 aaaacgcgaa aacataagga ttctagtttc aaaagggctg ataagcataa aatgaaatgt
     3601 aatatttcga tgtataaaat ttttaattag ctaaaaatca tcgcattaat tttttgagct
     3661 acatcatcaa aattcggaca ttttaacgac acatataatt taattttagg ttcagtacca
     3721 gaaggacgta aagcgataaa tccttcgtca aataagacac gaataacatt tgatttagga
     3781 gaattaatct gcgacgttgt atctttatcc aaatgataaa cctcgctagt taaataatct
     3841 tcaattgctt tcactttgag tccttgaatc tcttgcggtg gatttgaacg gaatttggtc
     3901 attattgcat taattttctt tttcccttca aatccttcta gcgtatgcga gaataatgta
     3961 tcctcatgtc taccaacagt ttgataaatc tgttctaatt catctttcaa tgttttgcca
     4021 tataatttta actcagaagc gtattttata atgagtggca caatttgtac ggcatcttta
     4081 tcacgtacaa aaggctctga tagaaaaccg taactctctt caaatgcgaa aatcatattt
     4141 tgatgatcat ccagttgtct tatttcctga gcaataaatt taaagcccgt cagcacctct
     4201 ttgtattcaa cattattata gcgtgctaat gactttgtta actcactact tacaatagat
     4261 tgaatcatta agcggtgacg taattgagac gtttgttgaa tacgataatt aagtaacagc
     4321 gcaccaattt ggttgccatt aaaatatgtg atatgaccgt gtgcatcacg ttcagcaata
     4381 ccaagtcgat ctgcatcagg gtcagttgat attaataagt ctgcatgact tttatttgca
     4441 agttcgactg cttgatcaaa agcgcgatga tcttcaggat tagcactttg aactgagctg
     4501 aaattcggat caggtttaca ttgtgcttct acaagattaa attgattgaa attcaaagat
     4561 tgtaataact caggtacaat cggaacactt gtaccatgca aactagtgaa cacaacttgt
     4621 aaatcagatt taggaatata gccaatcata ttttgaatgt gtttcatata gtcatcagtt
     4681 acagatttcg gaaaaggctt gatataagat gtattttgtt tagaaatagg tatatcaatc
     4741 tgtaatggat cgccaacttc ttcgatataa cgacttgcaa gctcagatgc atcagtcgat
     4801 aattgcgcac catcagaacc atatactttg atgccgttat agtctttcgg attatgactt
     4861 gctgtaatca taatgccagc agtagtatta agattgcgca ccgcgaacga taattccggt
     4921 gtcgttttat atgtatcagg taaataaact gttatttgat ggtttgctaa tacattagca
     4981 attatttggg cgaattcagt tgaaagatgt ctaatatcat aatgaatgac tattgttgga
     5041 ctgtttgttt gggcatttaa ataacgcgct aaacctaatg ccaatttttc aatagtaaac
     5101 ttattaagtc gaccttcacc aagaccgaat tttccgcgta tacccgcagt accaaatgtt
     5161 aatttacttt caaaaccttc tcgctgttca atgtcagatt gctgctcata aaaatgttta
     5221 actaaactat cattagctcg ttctatccat aattctttat ccattgttgc taaacatcct
     5281 ttcaaaatct cagttagact taataaaaca tgaaaactaa agcccttaca tttatgtaat
     5341 gaattataaa gaaatacgcc ccaaaagtaa aaaaacacag ccccaagaca atacttttca
     5401 caagtattat ataatagatg tgtatgaaaa tgcatggagt agagcgttca tgtgaatgta
     5461 aaatattaat ttttaatatt gatttatata tagttttgta atttttgata gaataacaat
     5521 taagatgatt ttaaattgaa gggtgagtct tatgaaaaaa gtaatcaatg tagtaggagc
     5581 tattattttt tctgataaca aaattctttg tgcacagaga agtgaaaaaa tgagtctgcc
     5641 tttaatgtgg gaatttcctg gcggtaaggt tgaaaagaat gaaactgaaa aagacgcttt
     5701 gattagagaa attagagaag aaatgaaatg tgatttaatt gttggagaca aagttataac
     5761 tacagaacat gaatatgatt ttggaattgt taggttaaca acatacaaat gtactttaaa
     5821 caaagagtta ccaactctaa ctgaacataa gagtattgaa tggttgtcaa taaacgaact
     5881 tgataaatta aattgggccc cagcggatat accagccgtt aataaaatta tgactgaggg
     5941 ataatatgag tagattacta aatgatttca atcaatcttt acataaaggg tttatagaca
     6001 aacatatttc tcataaaggg aattatacac cgaagctttt agtaaataat aaaaatgaaa
     6061 aagttctttc aacaattata gatgaacttc aaaaatgtga aacgttttat ttttctgtgg
     6121 cttttataac agaaagcggt ttagccagct
//
LOCUS       DAMQWL010000130         6127 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.132, whole genome shotgun sequence.
ACCESSION   DAMQWL010000130 DAMQWL010000000
VERSION     DAMQWL010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6127
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.132"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(173..1051)
                     /locus_tag="PF788_002343"
     CDS             complement(173..1051)
                     /locus_tag="PF788_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease"
                     /protein_id="HDG6304587.1"
                     /translation="MPNKILLVDGMALLFRHFYATSLHKQFMYNSQGEPTNGIQGFVR
                     HIFSAIHEIRPTHVAVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQF
                     GFVNIGVKNYEADDVIGTLAQQYSTDNDVYIITGDKDLLQCINDNVEVWLIKKGFNIY
                     NRYTLHRFNEEYALEPQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVV
                     ENIDALSAGQRNKINDNLDELYLSKRLAEIHTQVPIDSEALFEKMSFATTLNHILSIC
                     NEHELHVSGKYISSHF"
     gene            complement(1071..4511)
                     /locus_tag="PF788_002344"
     CDS             complement(1071..4511)
                     /locus_tag="PF788_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDG6304588.1"
                     /translation="MINKEQLDLLYKLKKEVEKSRNEALLHTINQVIKKVYLQQYTCS
                     FVGHFSAGKSTLINLLIEQDILPSSPVPTTSNTAIVSVSDNHDIIANLPNQTYAKLSN
                     YDEVREMNRQNVDVESVEINFQSAKFENGFTLQDTPGVDSNVASHQSITEQYMYTSNM
                     IFYTVDYNHVQSELNFKFMKHINDVGIPVVFIINQIDKHQDDELSFSTFKSRVEKSIA
                     DWGIKLERTFYVSKFDHPENELEVLSSYLISLDQHRETIEDYTSRTVEYITEAQLDYI
                     QSEIQEVLEDLGIEEAEFEQAFLNSQQHQAISEEAQLLNNPDELMAFLKNKRKNILEN
                     AYIMPHNMREMLRSYLESMSQDFNVGGFFNKKKKKLQIQQQRLLTATDALQEHVNQQI
                     RQPMREDMSFVTRFINKKEASDKVLNQHYDVKPEMIEGLYQPQTSISNTYVLTFSDEV
                     VKAIKKYVEQQSTPIFKEIIENVQADELPTEESDDLKEYQRYTELNELRQSLTTKNYR
                     HYYIHLDESLDKLIGRQETTYQVATDNAQDNRDNQQLNQNTATTNMSIDIQKALDIIS
                     DVPLFKRTKQDIHETLTRIDNKLIKIGVFGTFSAGKSSLINALLGEHILVSSPNPTTA
                     ATTEISYGDESYITLKSQSQLLDEINAVVEYQDMSYSTIEDFINSDLEKLKSHLNKNQ
                     LAFIQAVEKHYKLYVNMLENGEKHAINQQELKKWSAEDEYATFVKTVHIALMHDWLKG
                     KIIVDSLGLHSNNQRHTNETEQILTSSDLILYVSYFNHSFTDNDKAFIEHMKDMNQLN
                     ENQALKMVINAADLAESQDDLEAVETYVSDALRQVHLQSDIFAVSSRNALQAEDKGID
                     QLKQSIQQFVDVESKSILEQQMIHQLQQMDRSYVEMITEFETNKADISRRQQRLTDYK
                     DKQRLQHQLIDATLQHTDNEVEEQVYHLNARLKLQLLDDVKSVFNSQMTQNSDFNEEK
                     KVSTRVYLDQIHQRLFLEQSLITERIKKYFNKQLTEQIAPIVQQLADLHVIINPQFNF
                     ESANIEQPLLHIDFNDMLNALPKQLTKRKILNPNGQRDIHESICQSTLELLQPQMGLL
                     RQQLELYVKQMAVEAESQFESFEANIQTQINDLLAFDLDTTLINQLKDKHQQLKTILY
                     "
     gene            4815..>6127
                     /locus_tag="PF788_002345"
     CDS             4815..>6127
                     /locus_tag="PF788_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HDG6304589.1"
                     /translation="MKNTFNPLQRLHFYAAIFIAPLLITLTISGIGYLFFPEVENNIY
                     KNEFFGDSDVKTHQTLNDAVHQVEQQYEGFFVSKVSILDEPYNKRITLSDMAGNQRYV
                     FLDHNNQFVADQNAKHTYSNVMRSIHSSLFTENTIINYLVELTACWMIFMILSGTYLL
                     IKKHLISNKSKALRWQKWHAMIGVIIAIPVFVLVLTGLPWSGFMGSKIAGMMDTNGAL
                     GQGELAINPPKSDLNELPWATRKNKQPASSEKGSSGHHGNAAMPQTKLDYQISIDKVV
                     EQAQKAGIKKPFSIVYPSDKNGTFIVSNTSNSGVTGLDVSPYKEQTLYFDQYSGKKLG
                     TIKYDDYGIIAKWFTWGIPLHEGHLFGILNKIINLFVCIALLVAIGMGFVSWIKRTKN
                     TAIKVPHRVKKPASISLIICLIVLGLLMPLFGLSLILVFIIELIL"
BASE COUNT         1914 a          995 c          907 g         2311 t
ORIGIN      
        1 aaatataatt ctttatactc tattgattaa tcaaatatgt atctatcaaa attcggctta
       61 tttattcact ctgacatatc caaatacgca aaaagactat ttctaccttg tatcgataga
      121 aatagtcttt ttatacttaa ttggtttaat ttttcataaa atcttatact ttttaaaaat
      181 gggatgaaat atattttcct gaaacatgta attcatgttc gttacaaatt gataaaatat
      241 gattaagcgt tgttgcaaat gacattttct caaaaagcgc ttcactatca attggtactt
      301 gtgtgtgaat ttcagccagt cgcttcgata aatatagttc atctaaattg tcattaatct
      361 tattacgttg cccagctgat aatgcatcaa tgttttcaac cacattttca acgctttgat
      421 attgctgaat taacttaata gccgttttct cgccaatacc tttaacaccc gcatatccat
      481 ctgctgtatc acccataaac gctttaatat cgattagttg ttgtggttca agggcatatt
      541 cttcgttaaa acgatgtaat gtatatctat tataaatgtt aaaacctttt ttaattagcc
      601 aaacttcaac attgtcatta atacattgca gtaaatcttt gtcgcccgta ataatataga
      661 catcgttatc agttgaatat tgttgtgcta atgtacctat aacatcatcc gcttcatagt
      721 ttttaacgcc aatatttaca aagccaaatt gctctgaaat ttctttaaca taatcaaatt
      781 gtggtatcaa ttcttctggt ggtgcagaac gattttgctt ataaccatca aacatatcat
      841 ttctaaaagt tgattgtccc atatcccaac atacagctac atgtgtaggg cgtatttcat
      901 gtattgccga aaagatatga cgcacaaatc cttgtattcc atttgtaggt tcaccttgtg
      961 aattgtacat aaattgttta tgaagacttg tagcatagaa atgtctaaat aatagcgcca
     1021 taccatctac aagtaatatt ttattaggca tttaaaacgt tccttctttc ttaatataaa
     1081 atagttttca gttgttgatg tttatctttc aattgattga taagtgttgt atctaaatca
     1141 aatgctaata aatcgtttat ttgcgtttga atattagctt caaaactttc aaattgcgat
     1201 tcagcttcta cagccatttg ctttacatat aattcaagct gttgcctcaa taatcccatt
     1261 tgtggttgta ataattctaa cgtactttga caaattgatt catgtatatc tctttgccca
     1321 tttggattca aaattttacg ttttgttaat tgtttaggca atgcatttag catatcgttg
     1381 aaatcgatgt gcaataatgg ttgctctata ttagctgatt caaagttaaa ctgaggatta
     1441 ataatgacat gtaaatctgc taattgttga acgattggtg caatttgctc agtgagttgc
     1501 ttattaaagt atttttttat acgttctgta attaaagatt gctctaaaaa caatcgttga
     1561 tgaatttgat ctaagtatac tctcgtagac actttctttt cttcattaaa atcactattt
     1621 tgcgtcattt gagaattaaa cactgattta acatcgtcaa gtagttgtag ttttaaacgg
     1681 gcatttaaat gataaacttg ttcttcaact tcgttgtctg tatgttgtaa cgtcgcatca
     1741 attaattgat gttgtaaacg ctgtttatct ttataatctg ttaacctttg ttggcgacgt
     1801 gaaatatcag ctttatttgt ttcaaattct gtaatcatct ctacataaga acgatccatt
     1861 tgttgaagct gatgaatcat ttgttgttct aaaattgatt tagattcaac atcaacaaat
     1921 tgttgtatgc tttgttttaa ttgatcaatg cccttatctt cagcttgcaa tgcatttcga
     1981 cttgatacag caaaaatgtc tgattgtaag tgtacttgtc ttaatgcatc tgatacatat
     2041 gtttcaactg cttcaagatc atcttgactt tctgctaaat cagcagcatt aattaccatt
     2101 tttaatgctt ggttttcatt caactggttc atatctttca tgtgttctat aaacgctttg
     2161 tcattatcag taaatgaatg attaaaataa cttacataca atattaagtc tgaagaagtt
     2221 aaaatttgtt cggtttcatt tgtatgcctt tggttatttg agtgtagccc taatgaatca
     2281 acaattattt taccttttaa ccaatcatgc attaatgcaa tgtgtactgt cttaacaaat
     2341 gttgcatatt catcttctgc actccacttt ttcaattcct gttgattaat ggcatgtttt
     2401 tctccatttt ccaacatatt gacatacaat ttataatgtt tttcaactgc ctgaataaaa
     2461 gcgagttgat ttttatttaa atgtgatttt aacttttcta aatctgaatt aataaagtct
     2521 tctatagtcg aataagacat atcttggtat tcaactactg cattaatttc atctaataat
     2581 tgcgattgtg attttagcgt tatataactc tcgtctccat aagatatttc tgtagtagct
     2641 gctgtagtag gatttggaga actgactaaa atatgctcgc ctaataatgc atttatcaaa
     2701 ctacttttac cagcactaaa tgttccaaat acacctattt ttattaattt attatctata
     2761 cgtgttaatg tttcgtggat atcttgcttt gtacgcttga acaaaggcac atccgaaatt
     2821 atatcaagcg ctttttgaat atctatagac atatttgttg tagctgtatt ttgatttagc
     2881 tgctgattat cacgattatc ctgagcatta tcagtagcca cttgatatgt tgtctcttgt
     2941 cgacctatta atttatctag agattcatct aaatgaatat agtagtgacg ataattctta
     3001 gtcgtcaatg actgacgcag ctcatttaat tctgtataac gttgatattc ttttaaatca
     3061 tcactttctt ctgttggtaa ttcatctgcc tgcacatttt ctattatttc tttaaaaatt
     3121 ggtgttgatt gttgttcaac atatttctta atggctttaa ccacttcgtc tgaaaatgta
     3181 agtacataag tattgctgat tgatgtttgt ggttgatata aaccttcaat catttctggc
     3241 ttaacgtcat aatgctgatt taatacttta tctgaagctt cttttttatt gataaaacgc
     3301 gtaacaaatg acatatcttc tcgcattggt tgacgaattt gttgattaac atgttcttgt
     3361 aacgcatctg tcgctgttaa taatcgctgt tgttgaattt gtagtttttt cttcttttta
     3421 ttaaaaaatc cgccaacatt aaagtcttga gacatacttt ccaaataact tcgtaacatt
     3481 tctctcatat tatgcggcat aatgtatgca ttttctaaaa tatttttacg cttattcttt
     3541 aaaaatgcca ttaattcatc tggattattt aaaagttgtg cctcttcact aattgcttga
     3601 tgttgttgac tatttaaaaa tgcttgttca aactccgctt cttcgatacc taaatcttct
     3661 agtacttcct gaatttcaga ctgaatgtaa tctagctgag cttcggtaat gtattcaacc
     3721 gttcttgatg tataatcctc tattgtctct ctatgttgat ctaatgaaat tagataactt
     3781 gataatactt caagttcatt ttcagggtga tcaaatttag atacataaaa ggtgcgttct
     3841 aatttaatac cccaatctgc aattgatttt tcaactcgag atttaaacgt agagaatgac
     3901 aattcatcgt cttgatgctt gtcaatttga ttaatgataa acacaacagg tattccaaca
     3961 tcatttatat gcttcataaa cttaaagtta agttcagatt gaacgtggtt atagtcaacc
     4021 gtataaaata tcatattact tgtatacata tattgttctg ttattgactg atgtgatgca
     4081 acatttgaat caacacctgg tgtatcttgc aacgtaaacc cattttcaaa tttagctgat
     4141 tgaaaattaa tttctacaga ttcaacgtcg acattttggc gattcatttc ccttacttca
     4201 tcataattag ataatttggc atacgtttga ttcggcaaat tagcaataat atcgtgattg
     4261 tctgaaactg acacaatagc agtattactt gtcgttggta caggtgaact tggtaagata
     4321 tcttgttcaa ttaataaatt tatcagtgtc gatttacctg cagaaaaatg tccaacgaac
     4381 gaacatgtat attgctgcaa atatactttc ttaattactt ggttaattgt atgtaaaagt
     4441 gcttcatttc gcgacttttc aacttctttt tttaatttat ataaaagatc taattgttct
     4501 ttattaatca tgttactttc ccctttggtt cgttcacata gaaatgcttg cttgttacaa
     4561 cgaattcata caatatcgat gtccatttaa acatagatcg ttaaatggct cgcattgtat
     4621 tatgtttaaa ttttatcata gctgcttgat aaaacatacg aataatcaat tttcttcaaa
     4681 cattccaact taaaagttca tttttctaaa aatcacaaat catcgttaaa tttttctaga
     4741 aaataaatat tgtcacagtt tgttcacaca catcacagaa ttgacaccgt ataatagcca
     4801 attgggaggg aaatatgaaa aatacattta atccattaca aagattacat ttctatgcag
     4861 caatatttat tgctccactg ttaatcactt taaccatttc gggcattggt tacttgttct
     4921 ttccagaagt tgaaaataat atttataaga atgagttttt tggtgacagt gatgtaaaaa
     4981 cgcatcaaac attaaatgat gcagtacatc aagttgaaca acaatatgaa ggattctttg
     5041 taagtaaagt tagcatactt gatgaaccat ataacaaacg aattacactg agtgatatgg
     5101 caggaaatca acgttacgtc tttctagatc ataacaatca atttgttgca gatcaaaatg
     5161 cgaaacatac gtattctaat gtgatgcgaa gtatacatag ttctttgttt actgaaaata
     5221 ctattattaa ttatttagta gagttaaccg catgttggat gatattcatg attttatctg
     5281 gtacttattt actcattaag aagcatttaa tttctaacaa aagtaaggca cttcgttggc
     5341 aaaagtggca cgcaatgatt ggagttatca ttgcaattcc agtatttgta ttagtcttaa
     5401 ctggattgcc atggtctggt tttatgggca gtaaaattgc cggtatgatg gacacaaacg
     5461 gtgcccttgg tcaaggtgaa ttagcgatta atccacctaa atcagatttg aacgaattac
     5521 cttgggctac acgtaaaaat aaacagccag cttcatccga aaaaggttca agtggtcatc
     5581 atggtaatgc agcaatgcct caaaccaaat tagattatca aatatctatt gataaggtcg
     5641 ttgaacaggc gcaaaaagct ggtattaaaa agccgttttc aatcgtatat ccaagtgata
     5701 aaaatggtac ctttattgta tctaatacta gtaattcagg tgttactggg ctagatgtat
     5761 caccatacaa ggaacaaaca ctttatttcg atcaatatag cggtaaaaag ctaggtacga
     5821 ttaaatatga tgactacggt attattgcta aatggtttac atggggcatt ccgcttcacg
     5881 aaggtcattt attcggcatt ttaaataaaa tcattaattt atttgtatgt atcgctttat
     5941 tagtagccat tggcatgggg tttgtctctt ggataaagcg tacaaaaaat actgcaataa
     6001 aagtaccaca tcgcgtaaaa aaaccagcat ctatatcact cataatatgt ttaattgtat
     6061 taggattatt aatgccatta tttggattat cacttatcct tgtatttata attgaattaa
     6121 tattata
//
LOCUS       DAMQWL010000131         6090 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.133, whole genome shotgun sequence.
ACCESSION   DAMQWL010000131 DAMQWL010000000
VERSION     DAMQWL010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6090
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.133"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(459..2831)
                     /locus_tag="PF788_002346"
     CDS             complement(459..2831)
                     /locus_tag="PF788_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000985232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDG6304590.1"
                     /translation="MAIKKKDRIIGVKELEIPQELKLVPNWVLWRAEWNEKQQNFGKV
                     PYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVLSDGNNFVCLDIDNAIDKK
                     GQINSELALKMMQLTYCEKSPSGTGLHCFFKGKLPDNRKKKRTDLDIELYDSARFMTV
                     TGCTIGQSDICDNQEVLNTLVDEYFKENLPANEVVREESNTNIQLSDEDIINIMMKSK
                     QKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKNKQQMERIFLNYNNLTDKWES
                     KRGNTTWGQLELDKAIKNQKTIYTKSIDEFNVIPQGSKDVKQLLNQLGHEERTKMEEN
                     WIEEGKRGRKPTTISPIKCAYILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIK
                     RVISYLEPKHNSNKADEVIYHLTNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPD
                     YIFTSKIDTSYVRQDIVPEINGWNIDRWIEEIACNDNQVVKLLWQVINDSMNGNYTRK
                     KAIFFVGDGNNGKGTFQELLSNVIGYSNIASLKVNEFDERFKLSVLEGKTAVIGDDVP
                     VGVYVDDSSNFKSVVTGDPVLVEFKNKPLYRATFKCTVIQSTNGMPKFKDKTGGTLRR
                     LLIVPFNANFNGIKENFKIKEDYIKNQQVLEYVLYKAINLDFETFDIPDASKKMLEVF
                     KEDNDPVYGFKVNMFDQWTIRKVPKYIVYAFYKEYCDENGYNALSSNKFYKQFEHYLE
                     NYWKTDAQRRYDNEELAKRIYNFNDNRNYIEPIESGKNYKSYEKVKLKAI"
     gene            complement(2923..3171)
                     /locus_tag="PF788_002347"
     CDS             complement(2923..3171)
                     /locus_tag="PF788_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001103960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1474 family protein"
                     /protein_id="HDG6304591.1"
                     /translation="MNWEIKNLMCDLKILKEKFEDLKDNHGSHFEDLYLHEPNHTLNK
                     DDAIKEGFSYHERRIHNDQMFDALEKASSFADQSQDNA"
     gene            complement(3172..3555)
                     /locus_tag="PF788_002348"
     CDS             complement(3172..3555)
                     /locus_tag="PF788_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000403836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island protein"
                     /protein_id="HDG6304592.1"
                     /translation="MEIKQKYQLSKVVKILEVVLYEEDKFQSDKDYHYQDKALYEYAL
                     KLVHNGLFNILAELDFEDEAFLILDEVTMTLSDVMKETQHVYRYSVIDEKGEHKHTTD
                     RKGHVIGMLEWALDYIVGNIEVEEL"
     gene            complement(3557..3760)
                     /locus_tag="PF788_002349"
     CDS             complement(3557..3760)
                     /locus_tag="PF788_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001231389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island protein"
                     /protein_id="HDG6304593.1"
                     /translation="MRKQVIITKTVVGWYNIKDTQHNLMLNIPPKVFEQYFPDVSKDV
                     QVACLEMDLSKITEIKNKKKVGS"
     gene            complement(3727..3900)
                     /locus_tag="PF788_002350"
     CDS             complement(3727..3900)
                     /locus_tag="PF788_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000784884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island protein"
                     /protein_id="HDG6304594.1"
                     /translation="MKMYLTYICLVSLLTILLLAISNMYVAFSVYGMMVTYGFNLTGE
                     ITTCENKLLLQKQ"
     gene            complement(3912..4184)
                     /locus_tag="PF788_002351"
     CDS             complement(3912..4184)
                     /locus_tag="PF788_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002459646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HDG6304595.1"
                     /translation="MSRTKLHDVPAKENTITEPKQVVVNPLFAKPNALASILGISYSS
                     VNRILKEWEKDSKGVDDLYYSLSSTMIVISIPRFEEYMKARHKKWM"
     gene            complement(4177..4440)
                     /locus_tag="PF788_002352"
     CDS             complement(4177..4440)
                     /locus_tag="PF788_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000243849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304596.1"
                     /translation="MVLNLKRLRAERIACGITQDEMAHKMGWKTRTPYAKRENGIVDI
                     GANEFIKMAKILGYETNNLDIFFTNNVPGKERKNILKGGELNV"
     gene            4633..4965
                     /locus_tag="PF788_002353"
     CDS             4633..4965
                     /locus_tag="PF788_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016170686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304597.1"
                     /translation="MRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTR
                     EFPLNRAEDFAKVLGIKTEYLLGFAEREESTKQDTIAAHLDGDFTEEELIEIRKYAEL
                     VRKAHRNQ"
     gene            4977..5435
                     /locus_tag="PF788_002354"
     CDS             4977..5435
                     /locus_tag="PF788_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HDG6304598.1"
                     /translation="MYLYEKMVIENKEIPIDDGKSLGNFEGLYDNGVILINKNLSETR
                     KAEVLYEELAHHKLTYGNILDQSKWINRKFENYARRHGFISAVPLREIVEAYNYGVRN
                     LYELSEYLQLSEKYILEAIEQYKKIYGIGTHYGEYSITFEPLRVFKYKEI"
     gene            5452..>6090
                     /gene="seq"
                     /locus_tag="PF788_002355"
     CDS             5452..>6090
                     /gene="seq"
                     /locus_tag="PF788_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylococcal enterotoxin type Q"
                     /protein_id="HDG6304599.1"
                     /translation="MNKIFRVLTVSLFFFTFLIKNNLAYADVGVINLRNFYTNYQPET
                     LQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYM
                     YGGITLANQNLDKPRNIPINLWVNGKQNTISTDEVSTQKKEVTAQEIDIKLRKYLQNE
                     YNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNETSFTYDLFYTGTGQAE"
BASE COUNT         1935 a         1064 c          811 g         2280 t
ORIGIN      
        1 ttatagtaac tcagtaactt tttgtcaaaa agactaatat gaaagtaaaa actgtggtta
       61 ctgaattcta gaattttagt atcttttagt gacttaaacg ttttttagta actttagtat
      121 cttaggcaat tttgtataac tgcaagtctc ttccgattat gtgcaactga aatttacagc
      181 tatgcaactc gttttaaatt ttccagttgc aatttttttc ttactgtcac aaggggttaa
      241 tccacttttg caactatgca accgaaatca cacaaattag tttatataat ttttgatact
      301 atttcttatt tatattttgg ttatttactt ttctactaat aagttataga ttttgagttg
      361 ctcagttgca taagtgccct aaacccttga tataactgtg attataggtg caacccgttt
      421 taaaattttc ggttgcattc ggttgcattc ggttgcaact atattgcttt tagcttcacc
      481 ttttcatacg atttatagtt ttttccactt tcaataggtt caatgtaatt tctattgtca
      541 ttaaagttgt atatcctctt agcaagttct tcattgtcat atcttcgctg tgcatcagtt
      601 ttccaataat tctctaaata atgttcaaat tgtttataaa acttgtttga actcaatgca
      661 ttatagccat tttcatcaca atattcttta taaaatgcgt atacaatata tttcggcact
      721 tttctaatag tccattgatc aaacatattt actttaaacc cataaactgg atcgttatct
      781 tctttaaata cttcaagcat ttttttagat gcatcaggaa tgtcaaaggt ttcaaaatct
      841 aaattaattg ctttataaag cacatactct agcacttgct gattttttat atagtcttct
      901 ttgattttaa aattctcttt aatgccatta aaattggcat taaacggtac tatcaataac
      961 cttcttaaag tcccgcctgt tttgtcttta aatttaggca ttccattcgt tgattgaata
     1021 actgtacact taaaagtcgc tctatataag ggtttatttt taaactcaac caacactgga
     1081 tcgccagtaa ctacactttt aaagtttgaa gaatcatcga catacacacc aactggtaca
     1141 tcgtctccaa ttactgctgt cttgccctct aacacactca atttaaaacg ttcatcaaac
     1201 tcattcactt ttaagctagc aatattgcta taacctatta cattagacaa taattcttga
     1261 aacgtccctt taccattatt tccatcacca acaaagaaaa tagccttttt acgagtgtag
     1321 ttaccattca ttgagtcatt aattacttgc cacaataatt taacaacctg attatcatta
     1381 caagcaatct cttctatcca ccgatctata ttccagccat ttatttcagg tactatatct
     1441 tgccttacat acgatgtatc tattttactg gtaaatatat aatcaggtgt aaatgattct
     1501 agttgcttcg ttttacggtt aaatacacca tttttaactg gtattaagta tggtgagtta
     1561 gttttctctt ttatatctac catattggtt aaatgataaa taacttcatc agctttgttg
     1621 ctattatgtt tgggctctaa ataggaaatc actcgtttta taattgtagt gttctgtgta
     1681 tatatccctt catcaaattg atacatagct aacttagtat tttcttcatc atcaaaaagt
     1741 ataaatgtta aatgctcatt caaaatatat gcacatttta tagggctaat tgttgtaggc
     1801 tttcgccctc gttttccttc ttcaatccaa ttttcttcca tttttgttct ttcttcatgc
     1861 cccaattgat tcaacaactg tttaacatct ttactcccct gtggtataac attaaattca
     1921 tctatcgatt tagtataaat tgtcttttga ttctttatag ctttatctaa ctcaagctgt
     1981 ccccaagtcg tattacctcg tttactttcc catttatccg taagattatt gtagtttaaa
     2041 aatatacgct ccatttgctg tttgttttta cctgtgtaaa acgctaagta gtgtaataag
     2101 ctttgtactg cttcgcttga actctcaaaa tatgattcat atgtgccttg taatagatct
     2161 ttaattttat ctttttgttt agatttcatc ataatgttta taatatcttc atcagataat
     2221 tgtatattgg tattagattc ctctctcaca acctcatttg ctggcaaatt ctctttaaaa
     2281 tattcatcaa ctagagtatt taatacttct tgattatcac aaatatcact ttgaccaatt
     2341 gtgcatcctg taacagtcat aaaccttgct gaatcatata actctatgtc taaatctgtt
     2401 cttttctttt tacggttatc tggtagttta cctttaaaga aacaatgtaa tcctgtacca
     2461 cttggagact tttcacaata tgtgagttgc atcattttta gtgctaattc agaattgatt
     2521 tgtccttttt tatcaattgc attatcaata tctaggcaaa caaaattatt accatcactt
     2581 aatacaaaac ctataccgct atattgctca tcaacttcat attcaatact tacactttca
     2641 aagtcacacc atgttttttt attggttgta ctagctctgt aaccattaat actatatggt
     2701 acttttccaa aattttgttg cttctcgttc cattcagctc gccataatac ccaattgggc
     2761 actaatttta attcttgcgg tatttctaat tctttaactc caataattct atcttttttc
     2821 ttaattgcca cagaatgcct cctttctaat ctgatttctc tgtattttca atgcaactaa
     2881 tgttaaaata ttaatggtat gattttataa atttttattt ttttatgcgt tatcttggct
     2941 ttggtcggcg aaagatgacg ctttttctaa tgcatcaaac atttgatcat tgtgaatacg
     3001 tctctcatga tatgaaaatc cttctttaat agcatcgtct ttatttaagg tatgatttgg
     3061 ctcatgtaga tataaatctt caaaatgcga gccatgatta tcctttaaat cctcaaactt
     3121 ttctttcaat atctttaaat cacacattaa atttttaatt tcccaattca tttataattc
     3181 ctccacttca atatttccca caatgtaatc taatgcccac tctaacattc caatcacgtg
     3241 tcctttgcga tctgttgtat gtttatgttc acctttttcg tctatgacac tataacggta
     3301 aacgtgttgt gtttctttca tgacatcact tagcgtcatt gttacttcat caagaattaa
     3361 aaatgcttca tcttcaaaat ctaattcagc aagaatattg aacaatccat tatgaactaa
     3421 ctttaaagca tattcatata atgctttatc ctgataatga tagtccttat cggattgaaa
     3481 cttatcttcc tcgtataata ctacttctaa tattttaacc acttttgata attgatattt
     3541 ttgtttgatt tccatcttaa ctacctactt ttttcttatt tttaatttct gtaatttttg
     3601 ataaatccat ttctaaacac gcaacttgaa catctttact aacatcagga aagtactgtt
     3661 caaatacttt tggcggtata tttaacatta aattatgttg agtatcttta atgttgtacc
     3721 agccaactac tgtttttgta ataataactt gttttcgcac gttgtaatct ctcctgttaa
     3781 attaaatcca taagttacca tcatgccgta cacactaaaa gcgacataca tgttagatat
     3841 tgctagtaat aatattgtta acaatgaaac taagcagata taagttaagt acattttcat
     3901 tgccttgcct cctacatcca ttttttatga cgcgccttca tgtactcctc gaatcgcgga
     3961 atactgataa caatcattgt tgatgataac gagtaatata aatcatcaac acctttagaa
     4021 tctttttccc actcttttaa aatgcgattc accgaactat atgaaattcc caaaatacta
     4081 gctagtgcat taggtttcgc aaacaaagga ttcactacaa cttgctttgg ttctgtaatt
     4141 gtattttctt tagctggtac atcatgcaat tttgttctag acatttaatt cacctccttt
     4201 taagatgttt tttcgttctt ttccgggaac gttattggta aaaaaaatgt ctaggttatt
     4261 tgtttcataa cctaatattt ttgccatttt aataaattca ttcgctccaa tatctactat
     4321 tccattttct ctctttgcat aaggcgttct tgttttccac cccattttgt gagccatttc
     4381 atcttgcgta ataccacaag ctattctttc cgctctcaat ctttttaaat ttagtaccac
     4441 gtttacacct cctatcgttc tcgttcgaga actaattaca atttaccatt tacgttctcg
     4501 ttcgtcaaca atttttactt aaaaaaattc aaaaagtttt ttcttcctta tatattgtat
     4561 tcttttggga acggtgttat aatcaaatcg ttcacaaata agaacaaata ttcaattcag
     4621 gagatacaag aaatgagaac taatgatgaa ataatcacaa taattaaaac atcaatgaaa
     4681 gaacaaaata tgtcactaag tgaattagct cgtcgtgtag gtgtagcaaa atcagcagta
     4741 tcaagatatt taaatttaac tagagagttc ccattgaatc gtgctgaaga ttttgcgaaa
     4801 gtacttggaa taaaaacaga atatttatta ggatttgctg aacgcgaaga atctacaaaa
     4861 caagatacta tcgccgcgca cttagatgga gattttacag aggaagaatt aattgaaatt
     4921 agaaagtatg cggagttagt tagaaaagca catcgaaatc agtaaggggt tattgcatgt
     4981 atttatacga aaagatggtt attgaaaaca aagagatacc aattgatgat gggaaatctt
     5041 taggtaattt tgagggtctc tatgacaatg gggttatttt aattaataaa aatttgtcag
     5101 aaacacgtaa agcagaagtg ttatatgagg aacttgccca ccacaagttg acgtatggca
     5161 acattttaga ccaatcaaaa tggattaata gaaaatttga aaattatgca cgtagacacg
     5221 gctttatctc agctgttcca ttacgtgaaa ttgtagaagc ttataattat ggcgtacgta
     5281 acttgtatga gttgtccgag tacctacaac tgagtgaaaa atacatatta gaagcgatag
     5341 aacaatataa aaagatatac ggtattggta cccactacgg cgagtattca attacatttg
     5401 agccgttgag agtttttaaa tataaagaaa tataacaaag gagaaatgaa aatgaataaa
     5461 atatttagag tactcactgt tagcttgttt ttcttcacat ttttaataaa aaacaatcta
     5521 gcatatgctg atgtaggggt aatcaacctt agaaactttt atactaatta tcaaccagaa
     5581 acgcttcaag gagttagttc tggaaatttt tctacttctc atcaattaga gtatattgat
     5641 ggaaaataca ctttatattc acagtttcat aatgaatatg aagcgaagag attaaaagat
     5701 cataaagtag atatctttgg aataagttac tcaggtcttt gtaatacaaa atatatgtat
     5761 ggcggaatta cgttggcgaa tcaaaattta gataaaccta gaaatatacc tattaatctc
     5821 tgggtcaatg gtaagcaaaa cactatatct acagacgagg tttctactca aaaaaaagag
     5881 gtaactgctc aagagattga tattaagtta cgaaaatacc tacaaaacga atacaatata
     5941 tatggtttta ataaaacaaa aaaaggtcag gaatatggat atcagtcaaa atttaattct
     6001 ggatttaaca aaggaaaaat tactttccat ttaaataatg aaacttcttt tacatacgat
     6061 ttgttttaca ccggaactgg tcaagcagag
//
LOCUS       DAMQWL010000132         6050 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.134, whole genome shotgun sequence.
ACCESSION   DAMQWL010000132 DAMQWL010000000
VERSION     DAMQWL010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6050
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.134"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            76..927
                     /locus_tag="PF788_002356"
     CDS             76..927
                     /locus_tag="PF788_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HDG6304600.1"
                     /translation="MGEYIVTKTLNNNVVVCTNNDQEVILIGKGIGFNKKEGMALNDQ
                     TITIEKIYKLESEQQKAHYKSLVEIADDNVLQVIIDSLNFISNTAMNVDSKQLVVSLT
                     DHIIFAYKRLKQNQVISNPFVMETMQLYSDAYHIAKQVIDQLNAALDVHFPEDEIGFI
                     ALHIASNTEDLSMHEMTLINNVIKKGIDIIESDLVTTVDKESLQYQRFIRHVQFLIRR
                     LRRKEYIHAQDDFVSMIKNHYPICYNTAYKILTMIQKQFDVNISESEIIYLTLHIHHF
                     EERINQS"
     gene            902..1069
                     /locus_tag="PF788_002357"
     CDS             902..1069
                     /locus_tag="PF788_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304601.1"
                     /translation="MKKGLINPKLSVLHGRFVTVKGICMVSLMLVILHKWTVFIQHLM
                     NILSGGESIIE"
     gene            1062..2270
                     /locus_tag="PF788_002358"
     CDS             1062..2270
                     /locus_tag="PF788_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDG6304602.1"
                     /translation="MNENEKNIRKNFLKFTESRYMKFVGGNDLVFSLIALVLLGIVIF
                     IFEKVSYVFDPFIIVFKTIAAPIIVSLILFYLFNPIVNMMERYRIPRVAGISIIYLAV
                     VGVITLIVNLLIPIIGSQVDSLVKNSPQYLEKLINSIDKIANNTFFSSYYSQINDWLN
                     SLPKKIPSMLSEFTDGFGSKIATFAETIANIGVVIVTTPFVLFFMLKDGHHFKEFSTN
                     IMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVIGLKYSLVLASIA
                     AVTSVVPYLGPTIAISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLK
                     IHPLTIIFILLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRRYNRFYGNDVGEY
                     DIKESNKIVE"
     gene            2751..5273
                     /gene="mprF"
                     /locus_tag="PF788_002359"
     CDS             2751..5273
                     /gene="mprF"
                     /locus_tag="PF788_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional lysylphosphatidylglycerol
                     flippase/synthetase MprF"
                     /protein_id="HDG6304603.1"
                     /translation="MNQEVKNKIFSILKITFATALFIFVAITLYRELSGINFKDTLVE
                     FSKINRMSLVLLFIGGGASLVILSMYDVILSRALKMDISLGKVLRVSYIINALNAIVG
                     FGGFIGAGVRAMVYKNYTHDKKKLVHFISLILISMLTGLSLLSLLIVFHVFDASLILD
                     KITWVRWVLYVVSFFLPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVVLYFCG
                     VIVDAHVSFMSFIAIFIIAALSGLVSFIPGGFGAFDLVVLLGFKTLGVPEEKVLLMLL
                     LYRFAYYFVPVIIALILSSFEFGTSAKKYIEGSKYFIPAKDVTSFLMSYQKDIIAKIP
                     SLSLAILVFFTSMIFFVNNLTIVYDALYDGNHLTYYILLAIHTSACLLLLLNVVGIYK
                     QSRRAIIFAMISILLITVATFFTYASYILITWLAIIFVLLIVAFRRARRLKRPVRMRN
                     IVAMLLFSLFILYVNHIFIAGTLYALDIYTIEMHTSVLRYYFWLTILIIAIIIGMIAW
                     LFDYQFSKVRISSKIEDCEEIINQYGGNYLSHLIYSGDKQFFTNENKTAFLMYRYKAS
                     SLVVLGDPLGDENAFDELLEAFYNYAEYLGYDVIFYQVTDQHMPLYHNFGNQFFKLGE
                     EAIIDLTQFSTSGKKRRGFRATLNKFDELNISFEIIEPPFSTEFINELQHVSDLWLDN
                     RQEMHFSVGEFNEEYLSKAPIGVMRNEENEVIAFCSLMPTYFNDAISVDLIRWLPELD
                     LPLMDGLYLHMLLWSKEQGYTKFNMGMATLSNVGQLHYSYLRERLAGRVFEHFNGLYR
                     FQGLRRYKSKYNPNWEPRFLVYRKDNSLWESLSKVMRVIRHK"
     gene            complement(5476..5985)
                     /gene="msrA"
                     /locus_tag="PF788_002360"
     CDS             complement(5476..5985)
                     /gene="msrA"
                     /locus_tag="PF788_002360"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDG6304604.1"
                     /translation="MNINTAYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHIENPTYE
                     QVKSGTSGHLETVEIQYDVALFSYNKLLEIFFSVIDPLDTGGQYQDRGPQYQTAIFYT
                     NDHQKELAETYIEQLKNTINADKAIATKILPASQFYKAEDYHQDFYKKNPERYAEEQK
                     IRQEYKNKQ"
BASE COUNT         1951 a          797 c         1018 g         2284 t
ORIGIN      
        1 gtatttaaat tattatactt tcaagttaga catttccgat atataatctt aataatagaa
       61 aaataggtga tgataatggg agaatatatt gttactaaaa cattgaacaa caatgtcgta
      121 gtatgtacta ataatgatca agaagttatt ttaatcggta aaggtattgg ttttaacaaa
      181 aaagagggaa tggcgttaaa cgaccaaact attacaatag agaaaattta taaattagaa
      241 agtgagcaac aaaaagcaca ttataaaagt ttagttgaaa tcgctgatga taatgtatta
      301 caagtaatta ttgattcgtt gaattttatt tctaatactg cgatgaatgt tgattcaaaa
      361 caacttgtag tttcattaac ggatcatatt atatttgctt ataaacgctt aaaacaaaat
      421 caagttatta gcaatccatt tgttatggaa actatgcagt tatatagtga tgcatatcat
      481 attgctaaac aggtgattga tcagttaaat gcagcattag atgtacattt tcctgaagat
      541 gagataggat ttattgcatt acatattgca tctaatacag aagatttatc tatgcatgag
      601 atgaccttga tcaataatgt tattaaaaaa ggtatagata tcattgaatc agaccttgtg
      661 acaactgttg ataaggaatc attacaatac caacgtttta taaggcacgt acaattttta
      721 attcgccgat taagaagaaa agaatatata catgcacaag atgattttgt gtctatgatt
      781 aaaaatcact atccgatttg ctataacaca gcatataaaa ttttaactat gatacaaaaa
      841 caatttgatg ttaatatcag tgagtctgaa attatatatt taacattaca cattcatcat
      901 tttgaagaaa ggattaatca atcctaaatt aagtgtatta cacgggcgtt tcgttactgt
      961 aaagggtatt tgtatggtat cattgatgtt agtaatttta cataagtgga ctgtttttat
     1021 acaacatctt atgaatattt taagtggtgg tgaatctata attgaatgaa aatgaaaaga
     1081 atataagaaa gaatttttta aaatttaccg aatcacggta tatgaagttt gttggtggga
     1141 atgatttagt cttctcatta atagcgctag tattgttggg tattgttatt tttattttcg
     1201 aaaaagtatc atatgttttt gatcctttta tcatcgtttt taagacgata gcagcaccta
     1261 tcatcgtctc tttaattcta ttctatctat ttaacccaat cgtaaatatg atggaacgtt
     1321 atagaatacc aagagttgca ggtatttcta ttatttatct agctgtagta ggtgttatta
     1381 cgttaattgt taatttattg atacctatta ttggttcgca agtagatagt ttagttaaaa
     1441 attcaccgca atatctagaa aaattaatta attctattga taaaatagca aataatacgt
     1501 ttttctcttc gtattatagt caaattaatg attggttaaa ttctttacct aagaaaatac
     1561 catctatgtt aagtgaattt acagatggct ttgggtctaa aattgcaacg tttgcagaaa
     1621 cgattgctaa tattggcgtt gtgattgtca caacaccatt tgtactattc tttatgctta
     1681 aagatggaca tcacttcaaa gaattttcaa cgaatattat gccaccgaaa ttccgaaaag
     1741 attttcatga tctacttgaa aaaatgagtg ttcaagttgg ttcatacatt caaggacaaa
     1801 ttatcgtttc attctgtatc ggtatactgt tgtttatcgg ttattcggtt atcgggttga
     1861 aatatagctt agtattagct agtattgcgg cagttacaag tgttgtacca tatttagggc
     1921 ctactatagc gatttctcca gctattgtaa tagctgctat aacatcgccg tggatgctct
     1981 taaaattagc agtagtatgg actttagtac aatttgttga agggcacttc atttcaccaa
     2041 atatcatggg taaaacactt aagattcatc cacttacaat cattttcatt ttactgtgtg
     2101 caggcaaatt gcttggtatt gtaggcgtta ttttaggtat tccgggatat gctattttaa
     2161 aagtattagt tactcattta ttccaattat ttaaacgtcg atacaatcgt ttctatggta
     2221 atgatgtagg tgaatatgat attaaagaaa gtaataaaat agttgaataa gtaataaaaa
     2281 ataccaatga ctatatgttt gttggtattt tttatggtgc ttataatgtt gggcagttac
     2341 atttatgatt atcagcacat gtttagctta taaattttta cgaaagttta gccgtttata
     2401 aagcacatgc ataatgaaac gagtatttgc cacttgatta gtacttcatt attatgtcga
     2461 aaataaaaat aagtggtatt tttaatatat taagaagcac tcataatcgg ctgttaatta
     2521 ataatatttt tcataagtat tgattcatca ttttctttat gttaaatatg aatcagtata
     2581 gataaccata ttgttctgtt tgagatagaa atattttcta tttacttctt aatacagata
     2641 tcaatatgac aaaagtgtta tataaatcaa aggtaaatga tatgctattt ttatggttta
     2701 tatgatatat tttgatttat aacagaaata attagaattg atgtgaaaaa atgaatcagg
     2761 aagttaaaaa caaaatattt tcaatcttaa aaattacgtt tgctacagct ttatttattt
     2821 ttgtagcaat cacattgtat cgggagttat ctggtattaa ctttaaagat acgttggttg
     2881 aatttagtaa gattaaccgt atgtccttag tgttactatt tattggtggt ggggcatcgc
     2941 ttgttattct atcaatgtat gatgtgattt tatctagagc tttaaaaatg gatatatcct
     3001 taggcaaagt tttaagagta agttatatca tcaatgcatt gaatgcgatt gtaggtttcg
     3061 gtggctttat tggtgcaggc gttagagcaa tggtttataa aaactatacg catgataaaa
     3121 agaaattagt tcactttata tccttaatac ttatttcaat gttgacaggt ttaagcttat
     3181 tatcattgct aattgtattc catgttttcg atgcatcttt aatcttagat aagattacat
     3241 gggtaagatg ggtattatat gtagtgtcat ttttcttacc attattcatt atttattcaa
     3301 tggttagacc acccgataaa aacaatcgtt ttgtaggatt gtactgcact ttagtgtcgt
     3361 gtgttgaatg gttagcagct gcagttgtat tatatttctg tggtgtaatt gttgacgctc
     3421 atgtatcatt catgtccttt attgcaatat ttatcattgc tgcattatca ggtttagtca
     3481 gctttattcc tggtggtttc ggcgctttcg atttagttgt attactagga tttaaaactt
     3541 taggtgtccc tgaggaaaaa gtattattaa tgctacttct atatcgtttt gcgtactatt
     3601 ttgtaccggt aattattgca ttaattttat catcatttga atttggtaca tcagctaaga
     3661 agtacattga gggatctaaa tactttattc ctgctaaaga tgttacgtca tttttaatgt
     3721 cttatcaaaa ggatattatt gctaaaattc catcattatc attagcaatt ttagtattct
     3781 ttacaagtat gatctttttt gtaaataact taacgattgt ttacgatgct ttatatgatg
     3841 gaaatcactt aacgtattat attctattgg caattcatac tagtgcttgt ttattacttt
     3901 tactgaatgt agttggtatt tataagcaaa gtagacgtgc cattatcttt gctatgattt
     3961 caattttatt aatcacagtg gcgacattct tcacttacgc ttcatatatt ttaataacat
     4021 ggttagctat tatttttgtt ctgcttattg tagctttccg tagagcacgt aggttgaaac
     4081 gcccagtaag aatgagaaat atagttgcaa tgcttttatt cagtttattt attttatatg
     4141 ttaaccatat atttattgct ggaacgttat atgcattaga tatttatacg attgaaatgc
     4201 atacatctgt attgcgctat tacttctggc ttacgatttt aatcatcgct atcatcatag
     4261 gtatgattgc atggttgttt gattatcaat ttagcaaagt acgtatttct tctaaaattg
     4321 aagattgcga ggagattatt aatcagtacg gcggtaatta tttgagtcac ttgatatata
     4381 gtggtgacaa gcagtttttc actaatgaaa ataaaacagc atttttaatg tatcgttata
     4441 aagcaagttc attagtggtt cttggagatc cgttaggtga tgaaaatgcc tttgatgaat
     4501 tgttagaagc attctataat tacgctgagt atttaggcta tgatgttata ttctatcaag
     4561 ttacagatca acacatgcct ttatatcata atttcggtaa ccaatttttc aaattaggtg
     4621 aagaagcaat tattgattta acgcaatttt caacttcagg taaaaaacgc cgtggattta
     4681 gagcgacttt aaataaattc gatgaactta atatttcgtt cgaaattatt gaaccaccgt
     4741 tttcaactga atttataaat gaacttcaac atgtaagtga tttatggcta gataatcgtc
     4801 aggaaatgca tttctctgtt ggtgaattta atgaagaata cttatctaaa gcgccaattg
     4861 gtgtaatgcg aaatgaagaa aatgaagtaa ttgcattttg tagtttaatg ccaacatact
     4921 ttaatgatgc catttcagtc gatttaatta gatggttgcc agagttagat ttaccattaa
     4981 tggatggtct atacttgcat atgttacttt ggagtaaaga acaaggttat acaaaattta
     5041 atatgggtat ggcaacgtta tcgaacgttg gtcaattgca ttattcatat ttaagagaac
     5101 gacttgcagg ccgtgtcttt gaacatttca acggtctata tcgtttccaa ggattacgtc
     5161 gttataaatc taaatataat ccgaattggg aaccacgctt tttagtttat cgtaaagata
     5221 attcgctttg ggaatcactt tctaaagtaa tgcgtgtaat acgtcacaaa taattaaaat
     5281 ccaagtgcta agaggtatac agttatgcct gatgcgcttg gattttttgg tttctataaa
     5341 gaatgattta taaaaaacgg tacagataag aatatttaag tttcctatct gtaccgtatt
     5401 ttaatattga aatgagctaa agttaagtcg cctaactttt attatcagtc caatcagttt
     5461 catcaagtat aaatgttatt gcttattttt gtattcttgg cgtatttttt gttcttctgc
     5521 atagcgctct ggatttttct tataaaaatc ttggtgatag tcttcggctt tgtaaaattg
     5581 tgacgctggt aatatttttg ttgcaattgc cttatcagca ttaatcgtat ttttaagctg
     5641 ctcgatataa gtctcagcga gttctttttg atgatcatta gtgtagaaaa tagctgtttg
     5701 atattgagga ccacggtctt gatattgacc acctgtatct aatgggtcaa tgactgagaa
     5761 aaatatttct aataacttat tgtatgagaa taatgcaaca tcatattgaa tttcaacagt
     5821 ttctaaatga ccactcgtac ctgattttac ttgttcgtaa gtaggatttt caatatgtcc
     5881 gcccatatat ccagaagtta ctttttctat gccgtcaaag gtgtcaaatg gtttcgtcat
     5941 acaccaaaag caacctccgg caaaataagc tgtattaata ttcatttttg acatcctttc
     6001 attagacctt agtacgattt attaagaaat cacttgcttt ttgaattgtt
//
LOCUS       DAMQWL010000133         5979 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.136, whole genome shotgun sequence.
ACCESSION   DAMQWL010000133 DAMQWL010000000
VERSION     DAMQWL010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5979
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.136"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            136..843
                     /gene="splA"
                     /locus_tag="PF788_002361"
     CDS             136..843
                     /gene="splA"
                     /locus_tag="PF788_002361"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease SplA"
                     /protein_id="HDG6304605.1"
                     /translation="MNKNVMVKGLTALTILTSLGFAENISNQPHSIAKAEKNVKEITD
                     ATKEPYNSVVAFVGGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDV
                     KDIVEYPGKEDLAIVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTK
                     YKMFESTGTINHISGTFMEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFG
                     VYFTPQLKEFIQNNIEK"
     gene            968..1690
                     /gene="splB"
                     /locus_tag="PF788_002362"
     CDS             968..1690
                     /gene="splB"
                     /locus_tag="PF788_002362"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease SplB"
                     /protein_id="HDG6304606.1"
                     /translation="MNKNVVIKSLAALTILTSVTGIGTTLVEEVQQTAKAENNVTKVK
                     DTNIFPYTGVVAFKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSI
                     KKIINYPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHP
                     YKNKYVLYESTGPVMSVEGSSIVYSAHTESGNSGSPVLNSNNELVGIHFASDVKNDDN
                     RNAYGVYFTPEIKKFIAENIDK"
     gene            1748..2467
                     /gene="splC"
                     /locus_tag="PF788_002363"
     CDS             1748..2467
                     /gene="splC"
                     /locus_tag="PF788_002363"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease SplC"
                     /protein_id="HDG6304607.1"
                     /translation="MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVK
                     DTNIFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKI
                     KSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLP
                     AQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSE
                     YNGAVYFTPQIKDFIQKHIEQ"
     gene            2588..3307
                     /gene="splD"
                     /locus_tag="PF788_002364"
     CDS             2588..3307
                     /gene="splD"
                     /locus_tag="PF788_002364"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease SplD"
                     /protein_id="HDG6304608.1"
                     /translation="MNKNIIIKSIAALTILTSITGVGTTVVDGIQQTAKAENSVKLIT
                     NTNVAPYSGVTWMGAGTGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYK
                     VTKIVDYPGKEDIAVVQVEEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPN
                     GNKLQMYESTGKVLSVNGNIVTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGEST
                     RSFAVYFSPEIKKFIADNLDK"
     gene            complement(3256..3363)
                     /locus_tag="PF788_002365"
     CDS             complement(3256..3363)
                     /locus_tag="PF788_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304609.1"
                     /translation="MLILLLISKNHLSMYGWMIYLSKLSAINFLISGEK"
     gene            3465..4181
                     /gene="splE"
                     /locus_tag="PF788_002366"
     CDS             3465..4181
                     /gene="splE"
                     /locus_tag="PF788_002366"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease SplE"
                     /protein_id="HDG6304610.1"
                     /translation="MNKNIIIKSIAALTILTSVTGVGTTVVEGIQQTAKAEHNVKLIK
                     NTNVAPYNGVVSIGSGTGFIVGKNTIVTNKHVVAGMEIGAHIIAHPNGEYNNGGFYKV
                     KKIVRYSGQEDIAILHVEDKAVHPKNRNFKDYTGILKIASEAKENERISIVGYPEPYI
                     NKFQMYESTGKVLSVKGNMIITDAFVEPGNSGSAVFNSKYEVVGVHFGGNGPGNKSTK
                     GYGVYFSPEIKKFIADNTDK"
     gene            4332..5051
                     /gene="splF"
                     /locus_tag="PF788_002367"
     CDS             4332..5051
                     /gene="splF"
                     /locus_tag="PF788_002367"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease SplF"
                     /protein_id="HDG6304611.1"
                     /translation="MNKNIIIKSIAALTILTSITGVGTTMVEGIQQTAKAENTVKQIT
                     NTNVAPYSGVTWMGAGTGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYK
                     VTKIVDYPGKEDIAVVQVEEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPN
                     GNKLQMYESTGKVLSVNGNIVSSDAIIQPGSSGSPILNSKHEAIGVIYAGNKPSGEST
                     RGFAVYFSPEIKKFIADNLDK"
     gene            5116..5250
                     /locus_tag="PF788_002368"
     CDS             5116..5250
                     /locus_tag="PF788_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304612.1"
                     /translation="MHYLICIKANQRLIFTNSIVDWFYLCMNEQLFDIIKNINDFESI
                     "
     gene            5414..>5979
                     /locus_tag="PF788_002369"
     CDS             5414..>5979
                     /locus_tag="PF788_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000028656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit M
                     N-terminal domain-containing protein"
                     /protein_id="HDG6304613.1"
                     /translation="MSITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFY
                     RFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIR
                     EIETQDFDIEHLATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALIS
                     KVMVNLDDLPFVHSDMEIDMLGDAYEFL"
BASE COUNT         2330 a          867 c         1054 g         1728 t
ORIGIN      
        1 ttcatgtaaa ataatttaat aaaacgttaa taagtggtta attaatattt aattaatatt
       61 tttatttaaa atgtatatag taaatgtgta tctagataca ttaactataa aaataaattt
      121 ggaaggaggt aaaatatgaa taaaaatgta atggttaaag gtttaactgc tttaactatt
      181 ttaacatctc ttggttttgc tgaaaatatt tctaatcagc ctcattcaat tgccaaagca
      241 gaaaagaatg tcaaagaaat taccgatgca actaaggaac catacaattc agtggtagca
      301 tttgtgggtg gtactggtgt agttgttggt aaaaatacaa tcgtaactaa caaacatatc
      361 gctaaaagta atgatatttt taaaaataga gtatcagcac atcattcgag taaaggtaaa
      421 ggcggaggaa actacgacgt taaagacatt gtagaatatc ccggaaaaga agaccttgcg
      481 atagttcatg ttcatgaaac aagtacagaa ggtttgaatt ttaataagaa cgttagttat
      541 acaaaatttg cagacggagc aaaagtgaaa gatagaattt ctgttattgg ttatccaaag
      601 ggtgcacaaa caaaatataa aatgtttgaa tcgacaggaa cgattaacca tatcagtgga
      661 acgtttatgg aatttgatgc gtatgcacaa ccaggtaatt caggatctcc tgtattgaat
      721 tctaaacatg aactgattgg tattttatat gcaggtagtg gaaaagatga atctgaaaag
      781 aatttcggtg tttatttcac accacaatta aaagaattta ttcaaaataa tattgaaaaa
      841 taagtatcat caattcattc gtgaagttga ttttttaaag agtgattaag aaaacggtta
      901 cataattaac taaatatact gaattatgta tctagatatc aaaataatta aaagagagga
      961 acttaaaatg aacaaaaacg tagtcatcaa gagtttagca gcattaacaa ttttaacatc
     1021 tgtaacaggt attggaacaa cattggttga ggaagtacaa caaactgcca aagcagaaaa
     1081 taatgtcaca aaagttaaag atactaatat ttttccatat actggtgtag ttgcttttaa
     1141 aagtgcaact ggatttgtag ttggaaagaa tactatttta acaaataaac atgtgtcgaa
     1201 aaattacaaa gtgggcgatc gtattactgc acatccaaat agtgataaag gtaatggtgg
     1261 tatttattcg attaaaaaga ttattaatta tccaggtaaa gaagatgtat cagtcattca
     1321 agttgaagag cgtgcaatag aacgtggacc aaaaggcttt aattttaatg ataatgtaac
     1381 gccattcaaa tatgcggcag gggctaaagc tggtgagcga attaaagtga ttggttatcc
     1441 acacccatac aaaaataaat atgttttata tgagtcaact ggccctgtga tgtcagtaga
     1501 aggtagcagt attgtatatt cagcgcatac tgaaagcgga aactctggat cacctgtatt
     1561 aaacagcaac aacgaattag ttggtattca ttttgcttct gatgtaaaaa atgatgataa
     1621 cagaaatgca tatggcgtct actttacacc agaaattaaa aaattcattg cagaaaacat
     1681 agataaataa acaaattgac tttaaacgag cgttgcaaca tatctcgaat tgtaaaggag
     1741 cttgaaaatg aataaaaata tagtcattaa aagcatggca gcattagcca ttctaacctc
     1801 agtaactgga ataaatgctg cagtcgttga agagacacaa caaatagcaa atgcagagaa
     1861 gaatgttacg caagttaaag atacaaatat ttttccatat aatggcgtcg tttcatttaa
     1921 agatgcgaca ggttttgtaa ttggaaaaaa tacaattatc accaataaac atgtatcaaa
     1981 agattataaa gttggcgata gaattactgc ccatccaaac ggtgacaaag gaaatggtgg
     2041 tatatataaa attaaaagca tttctgatta tccgggtgat gaagacatct ctgtcatgaa
     2101 tattgaagaa caagcagtcg aacgtggacc aaaaggcttt aattttaatg aaaatgtcca
     2161 agcattcaat tttgcgaaag atgctaaagt tgatgacaaa attaaagtta ttggttaccc
     2221 attacctgct caaaatagtt ttaaacagtt tgaatctaca ggaactataa aaagaatcaa
     2281 agacaatatt ttaaattttg atgcatacat tgaacccggg aattcaggat caccagttct
     2341 aaattctaac aatgaggtca taggtgtggt gtatggcggt attggaaaaa ttggttctga
     2401 atataatggt gccgtatact ttacgcctca aatcaaagat tttattcaaa agcacattga
     2461 acaataaaca aatttaaata tacaccatga gcatgtgttc aataatttta atgaaaaaca
     2521 tcggtcgaat ataacataaa aaaacgtcta tatcaaaagc atcatgaata aacagaggag
     2581 cacaaaaatg aataaaaata taatcatcaa aagtattgcg gcattgacga ttttaacatc
     2641 aataactggt gtcggcacaa cagtggttga tggtattcaa caaacagcca aagcagaaaa
     2701 tagtgtgaaa ttaattacca acacgaatgt tgcaccatac agtggtgtta catggatggg
     2761 cgctggaaca ggatttgtag ttgggaatca tacaatcatt accaataaac atgttactta
     2821 tcacatgaaa gtcggtgatg aaatcaaagc acatcctaat ggtttttata ataacggtgg
     2881 tggactttat aaagttacta agattgtaga ttatcctggt aaagaagata ttgcggtcgt
     2941 acaagttgaa gaaaaatcaa cgcaaccaaa aggtagaaaa ttcaaagatt tcactagcaa
     3001 atttaatata gcatcagaag ctaaagaaaa tgaacctata tcagtcattg gttatccaaa
     3061 tcctaatgga aataaactac aaatgtatga atcaactggt aaagtactat cagtgaatgg
     3121 aaatatagtg acatctgatg cggttgtcca acctggcagc tctggttcac ctatattaaa
     3181 tagtaagcga gaagcaattg gtgttatgta tgctagtgat aaaccaacag gtgaaagtac
     3241 aaggtcattt gctgtttatt tctctcctga aattaagaaa tttattgcag ataatttaga
     3301 taaataaatc atccatccat acattgataa atgattttta gaaattaaca acaaaatcaa
     3361 caattttaaa catctctgtg attctattta ttcgaaatga tttaaaaaat aaaacttcaa
     3421 aaacctaacc ttatatttat acgaatactt agaggagcac aaaaatgaat aaaaatataa
     3481 tcatcaaaag tattgcagca ttgacgattt taacatcagt gactggcgtc ggcacaacag
     3541 tggttgaggg tattcaacaa acggctaaag ctgaacataa tgtgaaacta atcaaaaata
     3601 ctaatgtagc accatacaat ggtgtcgttt cgataggatc tggaacaggt ttcattgtcg
     3661 gtaaaaatac aattgttacc aacaagcatg tcgttgcagg tatggaaatt ggtgcacata
     3721 ttatagcgca tcccaatggt gaatataata atggcggatt ttataaagtt aaaaaaattg
     3781 tccgttattc aggtcaagaa gatattgcca ttctacatgt ggaagataaa gctgttcatc
     3841 caaaaaacag gaattttaaa gattacacag gcattttaaa aatagcatca gaagctaaag
     3901 aaaatgaacg catttcaatt gttggctatc cagaaccata tataaataaa tttcaaatgt
     3961 atgagtcaac aggaaaagtg ctgtcagtta aaggcaacat gattattact gatgctttcg
     4021 tagaaccagg caactcaggt tcagctgtat ttaacagtaa atacgaagtt gtaggtgttc
     4081 actttggtgg aaacggccct ggaaataaaa gtacaaaagg atatggtgtt tatttctctc
     4141 ctgaaattaa gaaattcatt gcagataaca cagataaata aatccttaca tagataaatg
     4201 attttaaaaa ttaacaacaa actcaacaat tcaaatcatc tctgtgattc catttattcg
     4261 aaatgattaa aaaaaataaa acttcaaaaa gctaacatta taattataca aatacttaga
     4321 ggagcagaaa aatgaataaa aatataatca tcaaaagtat tgcagcattg acgattttaa
     4381 catcaataac tggtgtcggc acaacaatgg ttgaaggtat tcaacaaaca gccaaagccg
     4441 aaaatactgt taaacaaatt acaaatacaa atgttgcacc atacagtggt gttacatgga
     4501 tgggcgctgg aacaggattt gtagttggaa atcatacaat cattaccaat aaacatgtta
     4561 cctatcacat gaaagtcggt gatgaaatca aagcacatcc taatggtttt tataataacg
     4621 gtggtggact ttataaagtt actaagattg tagattatcc tggtaaagaa gatattgcgg
     4681 ttgtacaagt tgaagaaaaa tcaacacaac caaaaggtag aaaattcaaa gatttcacta
     4741 gtaaatttaa tatagcatca gaagctaaag aaaatgaacc tatatcagtc attggttatc
     4801 caaatcctaa tggaaataaa ctacaaatgt atgaatcaac tggtaaagta ttatcagtga
     4861 atgggaatat agtgtcatcg gatgcaatta ttcagcctgg tagctctggt tcacctatat
     4921 taaatagtaa acacgaagct attggtgtaa tctatgccgg taataagcca tcaggtgaaa
     4981 gcacaagagg atttgctgtt tatttctctc ctgaaattaa gaaattcatt gcagataatt
     5041 tagataaata attaaaactt agacattcac ccaatcctga caaaatatac tataactaac
     5101 atttattaat atatattgca ttatttaata tgcatcaaag ccaatcaacg attgattttc
     5161 accaactcaa ttgttgattg gttttattta tgtatgaatg aacaactttt tgacatcatt
     5221 aagaatataa atgattttga aagcatttga aagctacaac atttctataa aatttttcaa
     5281 taacaattgc gccactaaaa ctcaaaattt ccaccaccaa catccaaatt atcaacatcg
     5341 caacataacc aaatgttata ataaatctat tacacaaaga gataaattac ttatgcaaag
     5401 gcggaggaat cacatgtcta ttactgaaaa acaacgtcag caacaagctg aattacataa
     5461 aaaattatgg tcgattgcga atgatttaag agggaacatg gatgcgagtg aattccgtaa
     5521 ttacatttta ggcttgattt tctatcgctt cttatctgaa aaagccgaac aagaatatgc
     5581 agatgccttg tcaggtgaag acatcacgta tcaagaagca tgggcagatg aagaatatcg
     5641 tgaagactta aaagcagaat taattgatca agtcggttac ttcattgagc cacaagattt
     5701 attcagtgcg atgattcgtg aaattgaaac gcaagatttc gatatagaac atctagcgac
     5761 ggcgattcgc aaagttgaaa catctacatt aggtgaagaa agtgaaaatg actttatcgg
     5821 gctgttcagc gatatggatt tgagttcaac gcgactaggt aacaatgtca aagaacgtac
     5881 tgctttaatc tctaaagtca tggttaatct tgacgactta ccattcgttc acagtgacat
     5941 ggaaattgat atgttaggtg atgcatatga attcctaat
//
LOCUS       DAMQWL010000134         5948 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.137, whole genome shotgun sequence.
ACCESSION   DAMQWL010000134 DAMQWL010000000
VERSION     DAMQWL010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5948
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.137"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            280..1236
                     /locus_tag="PF788_002370"
     CDS             280..1236
                     /locus_tag="PF788_002370"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDG6304614.1"
                     /translation="MLNSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLS
                     KGFPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYNNNIWNEWAFENYIKSDEYKGP
                     DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDKD
                     GNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQL
                     YQRSADIFLGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLA
                     RESFNPPTLKINSDKSIFDINYEDLEIVDYESHPAIKAPIAV"
     gene            1436..1915
                     /locus_tag="PF788_002371"
     CDS             1436..1915
                     /locus_tag="PF788_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HDG6304615.1"
                     /translation="MTLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMG
                     RKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQTLFEEM
                     IDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK"
     gene            1930..2769
                     /gene="fakB2"
                     /locus_tag="PF788_002372"
     CDS             1930..2769
                     /gene="fakB2"
                     /locus_tag="PF788_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid kinase binding subunit FakB2"
                     /protein_id="HDG6304616.1"
                     /translation="MTKQIIVTDSTSDLSKEYLEANNIHVIPLSLTIEGASYVDQVDI
                     TSEEFINHIENDEDVKTSQPAIGEFISAYEELGKDGSEIISIHLSSGLSGTYNTAYQA
                     SQMVDANVTVIDSKSISFGLGYQIQHLVELVKEGVSTSEIVKKLNHLRENIKLFVVIG
                     QLNQLIKGGRISKTKGLIGNLMKIKPIGTLDDGRLELVHNARTQNSSIQYLKKEIAEF
                     IGDHEIKSIGVAHANVIEYVDKLKKVFNEAFHVNNYDINVTTPVISAHTGQGAIGLVV
                     LKK"
     gene            2855..3388
                     /gene="msrA"
                     /locus_tag="PF788_002373"
     CDS             2855..3388
                     /gene="msrA"
                     /locus_tag="PF788_002373"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDG6304617.1"
                     /translation="MTKEYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYE
                     QVCTNQTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYH
                     DEHQKKAAEFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKKNPVHYYQYQR
                     GSGRKAFIESHWGNQNA"
     gene            3381..3809
                     /gene="msrB"
                     /locus_tag="PF788_002374"
     CDS             3381..3809
                     /gene="msrB"
                     /locus_tag="PF788_002374"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDG6304618.1"
                     /translation="MLKKDKSELTDIEYIVTQENGTEPPFMNEYWNHFAKGIYVDKIS
                     GKPLFTSEEKFHSECGWPSFSKALDDDEIIELVDKSFGMLRTEVRSEESNSHLGHVFN
                     DGPKESGGLRYCINSAAIQFIPYEKLEELGYGDLISHFDK"
     gene            3821..4321
                     /locus_tag="PF788_002375"
     CDS             3821..4321
                     /locus_tag="PF788_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDG6304619.1"
                     /translation="MFKKLFGKGKEVQKDIAIYAPLTGEFVKIEDIPDPVFAQKMMGE
                     GFGINPTEGEVVSPIAGRVDNVFPTKHAIGLKADNGLELLVHIGLDTVQLDGEGFEVL
                     VSSGDEVNVGDPLVRFNLEYINNNAKSVISPIIITNTDQAASINIYDENAVIKGETKV
                     IDVTMN"
     gene            4321..4542
                     /locus_tag="PF788_002376"
     CDS             4321..4542
                     /locus_tag="PF788_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YozE family protein"
                     /protein_id="HDG6304620.1"
                     /translation="MKNYSFYQFVMTVRGRHDDKGRLAEEIFDDLAFPKHDDDFNILS
                     DYIETHGDFTLPMSVFDDLYEEYTEWLKF"
     gene            4734..>5948
                     /locus_tag="PF788_002377"
     CDS             4734..>5948
                     /locus_tag="PF788_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDG6304621.1"
                     /translation="MDDKQHTSSSDDERAEIATSNQDQETNSSKRVHLKRWQFISILI
                     GTILITAVITVVAYIFINQKISGLNKTDQANLNKIENVYKILNSDYYKKQDSDKLSKA
                     AIDGMVKELKDPYSEYLTKEQTKSFNEGVSGDFVGIGAEMQKKNDQIMVTSPMKGSPA
                     ERAGIRPKDVITKVNGKSIKGKALDEVVKDVRGKENTEVTLTVQRGSEEKDVKIKREK
                     IHVKSVEYKKKGKVGVITINKFQNDTSGELKDAVLKAHKDGLKKIVLDLRNNPGGLLD
                     EAVKMANIFIDKGKTVVKLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASASEVF
                     TGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD
                     VTIDTPKYQSLNV"
BASE COUNT         2230 a          844 c         1071 g         1803 t
ORIGIN      
        1 aataggacat caaacataat attcaaatca tgtgttaacc tcttttttaa aattttttag
       61 cattaaagtt atagatttgg gtaaacaatt accaattgga aacatatatc acgttacgat
      121 ggggtaggta cttaatcagc attttataaa taaagtaacg gaattcatga tattaatatc
      181 atattcctaa aatgagtgat aacaaaatgc tacataaagt taagttatat caaactaaat
      241 atacatacta taaataatga aaatgaggtg ttatcgcata tgttgaattc atttgatgca
      301 gcatatcaca gtctttgtga agaagtttta gaaataggaa atacacgaaa tgatcgcaca
      361 aatacaggta cgatttcgaa atttggtcat caacttcgct ttgacttatc taaaggattt
      421 ccactattaa cgacaaagaa agtttctttt aaattagtag caaccgaatt attatggttc
      481 attaaaggag atacaaacat ccaatactta ttaaaatata ataataatat atggaacgaa
      541 tgggcttttg aaaattatat caaatcagac gagtataaag gtccagatat gacagatttc
      601 gggcatcgtg cattgagtga tcctgaattt aacgaacaat ataaagaaca aatgaaacaa
      661 tttaagcaac gtattcttga agatgataca tttgcgaagc aattcgggga tttaggaaat
      721 gtttatggta aacaatggcg agattgggtt gataaagatg gtaatcattt tgatcaactt
      781 aaaacagtaa ttgaacaaat taagcataat ccagattcaa ggcgacacat cgtatctgca
      841 tggaatccaa cagaaattga tacaatggca cttccgcctt gtcataccat gttccagttt
      901 tatgtccaag atggtaagtt aagttgccag ttataccaac gtagcgcaga tatcttttta
      961 ggtgtgccat ttaatatcgc aagctacgct ttattgacac accttattgc caaagaatgt
     1021 ggacttgaag tgggtgaatt tgtgcataca tttggagatg cacatattta ttcaaatcat
     1081 attgatgcga ttcaaacaca attagcacgt gaaagcttca atcctccaac attaaaaatt
     1141 aacagtgaca agtctatttt cgacataaat tatgaagatt tggaaattgt tgactatgaa
     1201 tcacatccag caataaaagc tccaatagca gtgtagtcat tgcatagtta gctaaccata
     1261 tagacatcaa aatgacatca tagtattttc aagtgcaaaa aagtactttt ttgtgttaaa
     1321 cgttttcata aattatgcaa aatcattatt tctatcacac tttatgataa aaattgtgtt
     1381 aaattaaaga taacttagta ataaaaaatg aaatgataga agaaggagga taattatgac
     1441 tttatccatt ctagttgcac atgacttgca acgagtaatt ggttttgaaa atcaattacc
     1501 ttggcaccta ccaaatgatt tgaagcatgt taaaaaatta tcaacaggtc atactttagt
     1561 aatgggtcgt aagacatttg aatcgattgg taaaccacta ccgaatcgtc gaaatgttgt
     1621 acttacttca gatacaagtt tcaacgtaga gggcgttgat gtaattcact ctattgaaga
     1681 tatttaccaa ctaccgggcc atgttttcat atttggaggg caaacattat ttgaagaaat
     1741 gattgataaa gtggacgaca tgtatattac tgttattgaa ggtaaattcc gtggtgatac
     1801 gttctttcca ccttatacat ttgaagactg ggaagttgcc tcttcagttg aaggtaaact
     1861 agatgagaaa aatacaattc cacatacctt tctacattta attcgtaaaa aataaggggg
     1921 aaaacgacca tgacaaaaca gattatagta acagactcaa catccgattt atctaaagaa
     1981 tacttagaag caaacaacat tcatgtaatt cctttaagtt taactattga aggagcttca
     2041 tacgttgacc aagtagatat tacatcagaa gaatttatta atcatattga aaatgatgaa
     2101 gatgtaaaga caagtcagcc agccataggt gaatttatat ctgcttatga agaactagga
     2161 aaagatggct ctgaaatcat aagtattcat ctttcttcag gattaagtgg tacatataac
     2221 actgcttacc aagcaagtca aatggtagat gctaatgtaa ctgttattga ttcaaaatct
     2281 atttcttttg gtttagggta tcaaatacaa cacctagtag agcttgtaaa agaaggtgtc
     2341 tcaacttctg aaatagttaa aaagttaaat catttaagag aaaacattaa attatttgta
     2401 gttatagggc aattgaatca attaattaaa ggtggcagaa ttagtaaaac aaaaggtttg
     2461 attggtaatc ttatgaaaat taaaccaatt ggtacactag atgatggtcg cttagagctt
     2521 gtgcacaatg cgagaactca aaattctagt atccaatact tgaaaaagga aattgctgaa
     2581 tttataggag atcatgaaat caaatccatt ggtgtcgcac atgctaacgt cattgaatat
     2641 gttgataaat tgaagaaagt ttttaatgaa gcttttcatg tgaataatta cgatataaat
     2701 gtaactacac cagttatttc tgcacatact ggtcaaggtg cgattggcct cgtagtcctt
     2761 aagaagtaaa tttaatcttt tcagtgttaa ttacttccat ttcaatcctt tatagactaa
     2821 atttataatt agatagatag aggaggtaat tcatatgaca aaagaatatg caacattagc
     2881 aggaggatgt ttctggtgca tggttaaacc atttacatca tatccaggca tcaagtcagt
     2941 cgtatctggt tatagtggcg gtcatgttga caacccaact tatgaacagg tatgtacgaa
     3001 tcaaaccggc catgtcgaag cagtacaaat tacgtttgat ccagaggtta cttcctttga
     3061 aaatatatta gacatatatt tcaaaacatt tgacccaact gatgatcaag ggcaattttt
     3121 cgatagaggc gaaagctatc aaccagtcat tttctatcat gatgaacatc agaaaaaggc
     3181 tgctgagttt aaaaagcaac aattaaatga acaaggtatt ttcaagaaac cagtgattac
     3241 acctattaaa ccatataaaa atttctatcc agctgaagac taccatcaag attattacaa
     3301 aaagaacccg gtacattatt accaatatca acgtggttca ggtagaaaag cgtttataga
     3361 atcacattgg gggaatcaaa atgcttaaaa aagataaaag tgaactaaca gatatagaat
     3421 atattgttac acaagaaaac ggcactgaac caccatttat gaatgaatat tggaatcatt
     3481 ttgctaaagg aatttatgta gataaaattt ctggtaaacc tttatttaca tctgaagaaa
     3541 agtttcattc tgaatgtgga tggcctagct tttccaaagc gcttgatgac gatgaaatta
     3601 tagaattagt cgacaaatca tttggtatgt tgagaactga agtgcgttca gaagaatcaa
     3661 atagtcattt aggacatgtc tttaatgatg gacctaaaga aagtggcggc ttaagatact
     3721 gtatcaattc cgctgcaatt caatttattc catatgaaaa gttagaagaa ttgggttatg
     3781 gcgatttaat atcacatttt gataagtagg agtggaaagt atgtttaaaa aattattcgg
     3841 aaaaggcaaa gaagttcaga aagatatcgc aatttatgca ccattaactg gagaattcgt
     3901 gaaaattgaa gatattccag atcctgtatt cgcacaaaaa atgatgggcg aaggttttgg
     3961 tattaatcca actgaaggag aagttgtgtc tccaattgca ggacgtgttg acaatgtctt
     4021 tccaactaag catgcgattg ggttaaaagc agataacgga ttagaattat tagttcatat
     4081 cggtttagac acagttcaat tagacggtga aggatttgaa gtgttagtgt ctagtggtga
     4141 cgaagttaac gtcggagatc cattagtaag attcaacctt gaatatatta ataataacgc
     4201 taaatctgta atttcaccaa ttataattac taacactgat caagcagctt caattaatat
     4261 ttatgatgaa aatgctgtga ttaaaggtga aacaaaagtg attgatgtga caatgaacta
     4321 atgaaaaact attcgtttta tcaatttgtc atgacagttc gtggtcgaca cgacgataaa
     4381 ggtcgtctag cagaagagat atttgacgat cttgctttcc caaaacacga tgatgatttt
     4441 aacatactgt ctgattatat tgagacacat ggtgatttca cattgccaat gtctgtattt
     4501 gatgatttat atgaagaata tacggaatgg ctaaaatttt aatataattt ttaataataa
     4561 tagttagaac cagggtgatg caattcgtta tcctggtttt aatttaaaat aaactaagtt
     4621 gtgactaaaa attaatcaat tatagtgaaa tatggtgcgc tatcttgcat aaattgatat
     4681 gattaactac acagaattta aaagtacata atacataata aggaagtgat acaatggatg
     4741 ataagcaaca cacatcttca tccgatgatg aacgcgctga aattgcaaca agcaatcaag
     4801 accaagaaac taattcatcg aaacgcgttc acttaaaacg ttggcaattc atatcaatat
     4861 taattggtac aatcctaata acagctgtca tcacagttgt tgcatatatt tttataaatc
     4921 aaaaaataag tggtttaaac aaaactgatc aagcaaactt aaataaaatt gaaaatgtgt
     4981 ataaaatctt aaatagtgat tattacaaaa aacaggactc tgacaagtta agtaaagctg
     5041 caattgatgg catggtcaaa gaattaaaag atccttattc tgaatattta acaaaagaac
     5101 aaacgaaatc ctttaatgaa ggtgtttcag gtgattttgt aggtattggt gcagaaatgc
     5161 aaaagaaaaa tgatcaaatt atggttacta gtcctatgaa gggatctcca gcagaacgtg
     5221 ctggcattcg tcctaaagat gtcattacta aagtaaatgg aaaatcaatt aaaggtaaag
     5281 cattagatga agttgtcaaa gatgttcgtg gtaaagaaaa cactgaagtc actttaactg
     5341 ttcaacgagg tagtgaagaa aaagacgtta agattaaacg tgaaaaaatt catgttaaaa
     5401 gtgttgagta taagaaaaaa ggtaaagttg gagttattac tattaataaa ttccagaatg
     5461 atacatcagg tgaattgaaa gatgcagttc taaaagctca caaagatggt ttgaaaaaga
     5521 ttgttttaga tttaagaaat aatccaggtg gactactaga tgaagctgtt aaaatggcaa
     5581 atatttttat cgataaagga aaaactgttg ttaaactaga aaaaggtaaa gatactgaag
     5641 caattcaaac ttctaatgat gcgttaaaag aagcgaaaga catggatata tccatcttag
     5701 tgaatgaagg ttcagctagc gcttctgaag tgtttactgg tgcgctaaaa gactataata
     5761 aagctaaagt ttatgggtca aaaacattcg gcaaaggtgt cgtacaaact acaagagagt
     5821 ttaaggatgg ttcattgtta aaatatactg aaatgaaatg gttaacgcca gatggtcatt
     5881 atattcacgg taaaggcatt aaaccagacg ttactattga cacacctaaa tatcaatctt
     5941 taaatgtc
//
LOCUS       DAMQWL010000135         5908 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.138, whole genome shotgun sequence.
ACCESSION   DAMQWL010000135 DAMQWL010000000
VERSION     DAMQWL010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5908
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.138"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            117..890
                     /gene="lpl1"
                     /locus_tag="PF788_002378"
     CDS             117..890
                     /gene="lpl1"
                     /locus_tag="PF788_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_047335196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl1"
                     /protein_id="HDG6304622.1"
                     /translation="MGYLKRFALYISVMILIFAIAGCGKGNETKEDSKEEQIKKSFAI
                     TLDMYPIKNLEDLYDKEGYRDSEFKKGDKGMWTIYTDFAKSNKPGELDDEGMVLNLDR
                     NTRTAKGHYFVTTFYRNGKLPDEKNYKIEMKNNKIILLDEVKDDKLKQKIENFKFFGQ
                     YANLKELRKYNNGDVSINENVPSYDVEYKMSNKDEIVKELRSRYNISTEKSPILKMHI
                     DGDLKGSSVGYRKLEIDFSKRENSKLSVIEFLSYKPAKK"
     gene            921..1721
                     /gene="lpl2"
                     /locus_tag="PF788_002379"
     CDS             921..1721
                     /gene="lpl2"
                     /locus_tag="PF788_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001269759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl2"
                     /protein_id="HDG6304623.1"
                     /translation="MRYLKKLAWFISVIILGIFIIGCDSSSDTGEKAKEDSKEEQIKK
                     SFAKTLDMYPIKNLEDLYDKEGYRDSEFKKGDKGMWMIYTDFAKSNKPGVLDNEGMIL
                     NLDRNTRTAKGYYFVDTIYDNHENSYSKNYRVEMKNNKIILLDKVEDQKLKERIENFK
                     FFGQYADFKSLKSYNNGDVSINSNVPSYDAKFKMSNKDENVKQLRSRYNIPTEKAPIL
                     KMHIDGDLKGSSVGYKKLEIDFSKEENSELSVVDSLNFQPAKKNKDDE"
     gene            1740..2547
                     /locus_tag="PF788_002380"
                     /pseudo
     CDS             1740..2547
                     /locus_tag="PF788_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000269700.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein"
     gene            2596..3396
                     /gene="lpl4"
                     /locus_tag="PF788_002381"
     CDS             2596..3396
                     /gene="lpl4"
                     /locus_tag="PF788_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001797296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl4"
                     /protein_id="HDG6304624.1"
                     /translation="MGYLKRLVLYIVIMVMSVFIIGCDKSSDTAEKSKEDSKETQIKK
                     SFAKTLDMYSIKNLEELYDKEGYRDGEFEKGDKGMWTIYTDFAKSNKPGELSNEGMVL
                     YLDRNTRTAKGYYFVRTFYRKDKLPDRKNYKVEMKNNKIILLDKVEDKKLKQKIENFK
                     FFSQYANLKELKNYSNGDVSINENVPSYDVKYKMSNKDENVKQLRSRYNIPTDKSPVL
                     KMHIDGNLKGSSVGDRKLEIDFSKRENSHLSVIDSLDYQPAKTNKDDE"
     gene            3415..4185
                     /gene="lpl5"
                     /locus_tag="PF788_002382"
     CDS             3415..4185
                     /gene="lpl5"
                     /locus_tag="PF788_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000835992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl5"
                     /protein_id="HDG6304625.1"
                     /translation="MKSIKRIGLCISLLILSIFVTSCDGDNKITGDSKETQIKKSFSK
                     TLDMYPIKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKGNKSDELDDEGMVLNLDR
                     NTRTAKGYYFVKKFYEKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQ
                     YANFKDLENYNNGDVSINWNVPSYDVEYKMSNKDENVKQLRSRYNIPTDKAPMLKMHI
                     DGDLKGSSVGYKRLEIDFSKEGRDISVIDYLSYKPAKK"
     gene            4217..5008
                     /gene="lpl6"
                     /locus_tag="PF788_002383"
     CDS             4217..5008
                     /gene="lpl6"
                     /locus_tag="PF788_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000456139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl6"
                     /protein_id="HDG6304626.1"
                     /translation="MEYLKRLALLISVIILTIFIMGCDSQSDTAENPKEGSKEAQIKK
                     SFSKTLDMYPIKNLEDFYGKEGYRDGEFKKDDKGTWLIRSEIVKQPKGKVMKTRGMQL
                     YINRNTETAKGFFVLKEISENNNRVNKDKEEKYEVKMVGNKIIPTEQINDEKIKKEIE
                     NFKFFVQYGNFKNFEKYNNGEFSYNPEAPIYSAKYQLHNDDYNVRQLRKRYDISTKET
                     PKLLLKGGGDLKNSSVGQNDIEFTFVERKGENIYFNDSVEFIPSK"
     gene            5078..5854
                     /gene="lpl7"
                     /locus_tag="PF788_002384"
     CDS             5078..5854
                     /gene="lpl7"
                     /locus_tag="PF788_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl7"
                     /protein_id="HDG6304627.1"
                     /translation="MKCFQKLYIFILILIVLMAGCESNKITGDSKETQIKKSFAKTLD
                     VYPTKNLEDFYDKEGYRDGEFKKGDKGKWVIRSEMTTELKNENMVSKGMVIRLNRNSR
                     TCTGEYFVRIVKEDSEGKVYSDERKYPVKMENNKIITLKPIDDEKVKKEIEEFKFFVQ
                     YGNFKELENYKDGEVTYNPEAPIYSAQYQLKNSDYNVEQLRKRYNITTKKAPKLLLKG
                     SGNLKGSSVGYKNIEFTFVENKEENIYFTDSINFNPSEDK"
BASE COUNT         2525 a          591 c         1141 g         1651 t
ORIGIN      
        1 attaaattga ttgtatatgt atattttggt aacgtaaaag agaaatatac aaaataatta
       61 attatttata tgaaaagaga atataaatga agtataaaac agagagacgt gaagcgatgg
      121 gatatttaaa aaggtttgca ttgtacataa gcgttatgat tttaatattt gcgatagcag
      181 gttgtggcaa aggtaatgaa acaaaagaag attcaaagga agaacaaatc aaaaagagct
      241 ttgcgataac attagatatg tatccaatta agaatctcga ggacttatat gacaaagaag
      301 gatatcgaga tagcgaattt aaaaaaggtg acaaagggat gtggacgata tatacagatt
      361 tcgccaaaag taataaaccg ggtgaattgg atgatgaagg tatggtttta aatctggata
      421 ggaatactag aaccgctaaa ggccattatt ttgttactac attttaccgg aatggtaaac
      481 taccagatga aaagaattat aaaattgaaa tgaaaaataa taagattatt ttattagatg
      541 aagtaaaaga tgataagctc aagcagaaaa tagaaaactt taaatttttc ggtcaatatg
      601 caaatcttaa agaattgaga aaatataata atggtgatgt ttcaattaat gaaaatgttc
      661 ctagttatga tgttgaatac aaaatgagca ataaagatga aatagttaag gaattaagaa
      721 gtcgttataa tatttcgact gaaaaatcac ctatattaaa aatgcatatt gatggggacc
      781 tgaaaggcag ttctgtaggt tatagaaagt tagaaattga cttttcaaaa cgtgaaaaca
      841 gcaaattatc agtcattgaa tttttaagtt ataaaccagc gaaaaaatag tattgataag
      901 gaatattagg gtgtgaaaaa atgcgatatc taaaaaagct tgcatggttc ataagtgtta
      961 ttattttggg catttttata ataggttgtg atagttcaag cgatactggg gaaaaagcaa
     1021 aagaagattc aaaggaagaa caaatcaaaa agagctttgc gaaaacatta gatatgtatc
     1081 caattaagaa tctcgaggac ttatatgaca aagaaggata tcgagatagc gaatttaaaa
     1141 aaggtgacaa agggatgtgg atgatatata cagatttcgc caaaagtaat aaaccgggtg
     1201 tattagataa tgaaggtatg attttaaatt tggatagaaa tacacgtacg gccaagggat
     1261 attattttgt agatactata tatgacaatc atgaaaactc ttatagtaaa aattatagag
     1321 ttgagatgaa aaacaataaa attattttat tagacaaggt ggaagatcaa aaacttaaag
     1381 aaagaataga aaactttaaa tttttcggac aatatgccga tttcaagagt ttgaaaagtt
     1441 acaacaatgg cgacgtttca attaatagta atgttccaag ttatgacgcg aaatttaaaa
     1501 tgagtaataa agatgaaaat gttaagcaat taagaagtcg ttataacatt cctactgaaa
     1561 aagctccaat attaaaaatg catattgatg gggacttaaa aggcagttcc gttggatata
     1621 aaaagttaga aatagacttt tcaaaagaag aaaatagcga attatcagta gtcgattcat
     1681 taaattttca gcctgccaaa aaaaataaag atgatgaatg atagggagga tgtgaaacaa
     1741 tgtggtcaat aaaaagaatt ggaatgtaca caaatgttat aattttgagc gtttttataa
     1801 taggttgtga tagttcaagc aataatgcag aaaatcaaag agaagactca aaagaagaac
     1861 aaatcaaaaa gagctttgcg aaaacgttag atatgtaccc tattaagaat ctcgaggatt
     1921 tatatgacaa agaaggatat cgtgatggtg agtttgaaaa aggcgataag gggacgtggg
     1981 tattgtattc agctatggta tcacaaccaa aaggcgagag tttaaaatca cgaggaatga
     2041 tattaaagtt agatagaaat aagagaactg ctaaaggaag ttatattatt agagaattga
     2101 aagaagataa aaatcatgat gttcaaaaaa atgaaaagaa atatccagtg aaattggtga
     2161 ataataggat agttttgata aaagatgtta aagacaaaaa gttaaaaaaa tgaaatagag
     2221 tcgtttgaat tattttcaca atatggaaac tttaatcatt ttgatcggaa tgagattact
     2281 aatatttcat ataatcctaa tgctcccaat tactctgcag aatataaaat gaagaaaaat
     2341 gacagaaaca ttcaacagtt gaaaaagaga tttaatctaa aaactagcaa gacaccaaaa
     2401 ttattgttta agggatctgg agatataaag gggtcttctg taggatataa ggaaatagaa
     2461 atcatattta gtagaagtaa agaagaaagc atttattatg ttgacagcgt tgagttcgtt
     2521 ccaagtaaca aaataacaaa aagttgatat tagtcaacaa aagcaaatat tgagaataaa
     2581 gagagttgtg aaatgatggg ttatttaaaa agacttgtat tgtatatagt tattatggtt
     2641 atgagtgttt ttataatagg ttgtgataaa tcaagcgata ctgcagaaaa atcaaaagaa
     2701 gactcgaaag aaacacaaat caaaaagagt tttgcgaaaa cgttagatat gtattcaatt
     2761 aagaatctcg aggaactata tgacaaagaa ggctatcgag atggcgaatt tgaaaaaggt
     2821 gacaaaggga tgtggacgat atatacagat ttcgccaaaa gtaataaacc gggtgaacta
     2881 agtaatgaag gcatggtctt gtacttagat agaaacacac gcacagctaa ggggtactac
     2941 tttgtcagga cgttttatcg caaggataaa ttacctgata gaaaaaatta taaagttgaa
     3001 atgaaaaata ataaaatcat tttattagat aaagtagaag ataaaaagct taaacaaaaa
     3061 atagaaaatt ttaaattttt cagtcaatat gcaaatctta aagaattgaa aaactacagc
     3121 aatggtgatg tctcaattaa tgagaatgtt ccaagttatg acgtgaaata taaaatgagt
     3181 aataaagatg aaaatgttaa gcaattaaga agtcgttata atattcctac tgataaatca
     3241 ccggtattaa aaatgcatat tgatggtaat ttgaaaggaa gttccgttgg agataggaag
     3301 ttagaaattg atttttcgaa acgtgaaaat agccatttat cagtaataga ttctttggat
     3361 taccagccag cgaaaactaa taaagatgat gaataatgag gatggtgtgt aacaatgaag
     3421 tctataaaaa ggattggatt gtgcataagt ctgttgattt taagcatttt tgtaacatct
     3481 tgcgatggtg ataataagat cactggagat tcaaaagaaa cacaaatcaa aaagagcttt
     3541 tcgaaaacgt tagatatgta tccaattaag aatctcgagg acttatatga taaagaagga
     3601 taccgtgatg gcgaatttaa aaagggcgac aaaggaatgt ggactatata tacagatttt
     3661 gctaaaggca ataaatcaga cgaattggat gatgaaggta tggttttaaa tctggataga
     3721 aatactcgaa cggctaaggg atattatttt gttaagaaat tttatgaaaa ggataaatta
     3781 cctgatagaa aaaattataa agttgaaatg aaaaataata aaattatctt attagacaag
     3841 gtagaagatc caaatctaaa aaagagaata gaaaacttta aatttttcgg acaatatgca
     3901 aattttaagg atttggaaaa ttacaacaat ggcgacgtgt caataaattg gaatgttcca
     3961 agttatgacg tggaatataa aatgagcaat aaagatgaaa atgttaaaca attaagaagt
     4021 cgttataaca ttcctactga taaagctcca atgttaaaaa tgcatattga cggggactta
     4081 aaaggtagtt ctgttggata taaaaggtta gaaatagatt tttcaaaaga aggtagggat
     4141 atttcagtca ttgattattt aagttataag ccagcgaaaa aatagtactg ataattaaat
     4201 attagggtgt gaaggaatgg aatatctaaa aaggcttgca ttgttaataa gtgttattat
     4261 tttgaccatt tttataatgg gttgtgatag tcaaagcgat actgcagaaa atccaaaaga
     4321 aggttcaaaa gaagcacaaa ttaaaaagag tttttcgaaa acgttagata tgtatccaat
     4381 taagaatctc gaggattttt atggcaaaga aggatatcga gatggcgaat ttaaaaaaga
     4441 tgataaaggt acttggctaa ttagatccga aatagttaaa cagccaaagg gcaaagtgat
     4501 gaaaacaaga ggtatgcaat tatatattaa tagaaatacc gaaacagcca aaggtttctt
     4561 tgttttgaaa gaaataagtg aaaataataa tcgtgtaaat aaagataagg aggaaaaata
     4621 cgaagtgaaa atggtaggaa ataaaattat tcctactgaa caaattaatg acgagaaaat
     4681 aaaaaaagaa attgaaaact tcaagttttt tgtgcaatat ggaaacttta aaaatttcga
     4741 aaaatacaac aatggtgagt tttcatataa tcctgaagca ccaatttatt cggctaaata
     4801 tcaattacac aacgatgatt acaatgtaag gcaactacgt aaaagatatg acatttcaac
     4861 aaaagaaaca ccgaagttac ttttgaaagg tggaggagat ttaaaaaatt cctcagttgg
     4921 tcaaaacgat attgaattta cttttgttga aagaaaaggt gagaatattt attttaacga
     4981 tagtgttgaa ttcataccaa gtaagtaaag ttaaattaaa atgtgtggtt agatgaaatg
     5041 atcaaatatc aaaaaatgtg caaagagatg tgacaagatg aagtgttttc agaaattata
     5101 catatttata ttaattttaa tcgtattaat ggcaggatgc gaaagtaata agatcactgg
     5161 agattcgaaa gaaacacaga tcaaaaagag ctttgcgaaa acattagatg tataccctac
     5221 gaaaaatcta gaagattttt atgacaaaga aggatatcga gatggcgaat ttaaaaaggg
     5281 tgacaaaggg aagtgggtta ttagatctga aatgacaaca gaactgaaaa atgaaaatat
     5341 ggtatctaaa ggtatggtca tacgtttaaa tagaaatagt agaacatgca ctggtgaata
     5401 ttttgtcagg atagttaaag aagacagtga gggcaaggta tatagtgatg aacgaaaata
     5461 tccagtgaaa atggaaaata ataaaatcat tacattaaaa ccaatcgatg atgaaaaagt
     5521 aaaaaaagaa attgaagaat ttaaattctt cgtacaatac gggaatttca aagaattgga
     5581 aaactataaa gacggagaag tgacatataa cccagaagca ccaatatact ctgcacaata
     5641 tcaattgaaa aatagtgatt ataatgtaga acaactacgt aagcgatata atataacgac
     5701 gaaaaaagcg cctaaattat tattgaaggg ttcaggtaat ttaaaaggct catcagttgg
     5761 atataaaaat attgaattta cctttgttga aaataaggaa gaaaatattt acttcacaga
     5821 tagtattaat ttcaacccaa gtgaggataa ataagtatat ttagtattac aaaaacgtta
     5881 gaaaaattaa taataaagtt aaattaac
//
LOCUS       DAMQWL010000136         5874 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.139, whole genome shotgun sequence.
ACCESSION   DAMQWL010000136 DAMQWL010000000
VERSION     DAMQWL010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5874
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.139"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..195
                     /locus_tag="PF788_002385"
     CDS             <1..195
                     /locus_tag="PF788_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDG6304628.1"
                     /translation="VPSIRETKVGYFLAKIYEPFLQPFRKVIPPIGIIDISSIAAIIV
                     LVLFQKGLLQIFNWILIQLQ"
     gene            305..1084
                     /locus_tag="PF788_002386"
     CDS             305..1084
                     /locus_tag="PF788_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001827493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HDG6304629.1"
                     /translation="MINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRG
                     QYILEVICGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIDYPEKFVT
                     LKHQHILGTLMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTI
                     PVTDMIQSNENWKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSA
                     DFQLQANDLISIQGFGRAHITDLGGKTKKDKTHITYRTLFK"
     gene            1108..1725
                     /locus_tag="PF788_002387"
     CDS             1108..1725
                     /locus_tag="PF788_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HDG6304630.1"
                     /translation="MPFTPNEIKNKEFSRVKNGLEPTEVANFLEQLSTEIERLKEDKK
                     QLEKVIEERDTNIKSYQDVHQSVSDALIQAQKAGEETKQAAEKQAEAIIAKAEAQANQ
                     MVGDAVEKARRLAFQTEDMKRQSKVFRSRFRMLVEAQLDLLKNEDWDYLLNYDLDAEQ
                     VTLENIHHLHENDLKPDEVAANAQNNASNTPDNNQQSNDSETTKK"
     gene            1946..4699
                     /gene="ileS"
                     /locus_tag="PF788_002388"
     CDS             1946..4699
                     /gene="ileS"
                     /locus_tag="PF788_002388"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDG6304631.1"
                     /translation="MDYKETLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKN
                     KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIE
                     QALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYE
                     AAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFDVKDDK
                     GVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALD
                     WDKASIKLEKEYTGKELEYVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDD
                     YIVGQKYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITH
                     SYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGE
                     WVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGF
                     THPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSS
                     ITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS
                     TDYLADVRISDEILKQTSDVYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLL
                     NRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRS
                     MQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKW
                     RTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVS
                     QVKVVDKLDDQATAYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK
                     SLV"
     gene            4989..5786
                     /locus_tag="PF788_002389"
     CDS             4989..5786
                     /locus_tag="PF788_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDG6304632.1"
                     /translation="MYHNSNANFVNGITLNVRDKNELKPFYEDILGLNIINETLTSIQ
                     YEVGQNNHVITLVELQNGREPLMSEAGLFHIAIKLPQISDLANLLIHLSEYDIPVNGG
                     IQPASLSLFFEDPEGNGFKFYVDKDEAQWTRQNNLVKIDIRPLNVPRLVSHATKLLWL
                     GIPDDAIIGALHIKTIHLSEVKEYYLDYFGLEQSAYMDDYSIFLASNGYYQHLAMNDW
                     VSATKRVENFDTYGLAIVDFHYPETTHLNLQGPDGIYYRFNHIEVED"
BASE COUNT         2134 a          831 c         1118 g         1791 t
ORIGIN      
        1 gtaccaagta ttagagaaac taaggtaggt tattttttag cgaaaatata tgaacctttc
       61 ttacaaccat ttagaaaagt aattccacct attggaatta tcgacatatc atcaatcgct
      121 gcaattatcg ttttagtatt attccaaaaa gggttactcc aaatctttaa ttggatttta
      181 attcaattac aataaattaa gcgacataac gaggcaaggg tacatgatac tttagcctcg
      241 tttttgatat gcatttttct gaatataagg gcaatagatg gtattttata atttttttaa
      301 ggtagtgatt aacatagata tttatcaaca ctttagacag gaagaatacg aattaattga
      361 tcagctaacg gataaatgtg atcaagcgga acagcattat gcaccagtat taacgcattt
      421 tttagatcca agagggcaat atatattgga agtgatttgt ggcagttatg aagatttaaa
      481 cgtatctttt tatggtggac ctaatgctga aagaaaaaga gcaatcattt cgccgaacta
      541 ttatgaacct aaagaaagcg actttgaatt aactttaatg gaaatagatt atcctgaaaa
      601 attcgtcact ttaaaacatc aacatatttt agggacatta atgtctttag gtatcgaacg
      661 cgaacaagtt ggagatataa ttgtgaatga acgaattcaa tttgttttga caagtagatt
      721 ggaatcattt attatgttag aattacaacg tattaaaggc gcatcagtta aactttatac
      781 tattccagta acagatatga tacaatctaa tgagaattgg aaaaatgaaa gtgcaacagt
      841 tagttcttta aggttagatg ttgttattaa agaaatgata cgtaaatcac gtacgattgc
      901 gaaacaacta atcgaaaaaa aacgtgttaa agtgaatcac actattgttg attcagcaga
      961 ttttcaatta caagcaaatg atttaatatc catccaaggt tttggtagag cacacattac
     1021 tgacttaggt ggtaaaacta aaaaagataa aacgcacatt acctatagaa cattattcaa
     1081 atagtaatga tttaaggagg ataacaaatg ccttttacac caaatgaaat taagaataaa
     1141 gagttttcac gtgtaaagaa tggtttagaa cctactgaag ttgctaattt tttggagcaa
     1201 ctaagcactg aaattgaacg tcttaaagaa gataaaaaac aacttgaaaa agtaatcgaa
     1261 gagagagata ctaatattaa gtcttatcaa gacgtgcatc aatctgtaag tgatgctttg
     1321 atacaagctc aaaaagctgg tgaagaaact aagcaagctg cagagaaaca agctgaagcg
     1381 attatagcta aggcagaagc gcaagctaat caaatggttg gtgacgcggt agaaaaagca
     1441 cgccgtttag cattccagac tgaagatatg aaacgtcaat caaaagtatt tagatcgcgt
     1501 ttccgtatgt tagttgaagc gcaattagac ttattaaaaa acgaagattg ggattacttg
     1561 ttgaattatg atttagacgc tgaacaagtg acgcttgaaa atattcatca tttgcatgaa
     1621 aatgatttaa agccagatga agttgcagca aatgcacaaa ataatgcatc aaatacacca
     1681 gacaataatc aacaatccaa tgattcagaa acaactaaga agtaagaatt aaataaagac
     1741 agacgcgtaa tatacattta acttttcaca gcgaattagg taatggtgag agcctagtaa
     1801 aagcatgtat gttatatcac tggcttttta atatttaaat aatgtaatga gagaactcta
     1861 agttgagtta ataagggtgg taccgcgagc aatcgtccct tttaatttaa cttagagttt
     1921 tttaaatttt taaggagtga aaaaaatgga ttacaaagaa acgttattaa tgcctaaaac
     1981 agatttccca atgcgaggtg gtttaccaaa caaggaaccg caaattcaag aaaaatggga
     2041 tgcagaagat caataccata aagcgttaga aaaaaataaa ggtaacgaaa cattcatttt
     2101 acatgatggc ccaccatacg cgaatggtaa cttacatatg ggacatgcct tgaacaaaat
     2161 tttaaaagac tttattgtac gttataaaac tatgcaaggg ttctatgcac catacgtacc
     2221 aggttgggat acacatggtt taccaattga acaagcatta acgaaaaaag gtgttgaccg
     2281 aaagaaaatg tcaacagctg aattccgtga gaaatgtaaa gaatttgctt tagaacaaat
     2341 tgaattacag aaaaaagatt ttagacgttt aggtgttcgt ggtgacttta atgatccata
     2401 tattacatta aaacctgaat acgaagctgc acaaattcgt atttttggag aaatggcaga
     2461 taaaggttta atttataaag gtaaaaagcc agtttattgg tctccttcaa gtgagtcttc
     2521 attagcagaa gcagaaattg aatatcacga taaacgttca gcatcaattt acgttgcatt
     2581 tgacgttaaa gatgacaaag gtgtcgttga tgcagatgct aaatttatta tctggacaac
     2641 aacgccatgg acaattccat caaatgttgc gattaccgtt catcctgaat taaaatatgg
     2701 tcaatacaat gtaaatggcg aaaaatatat tattgcagaa gccttgtctg acgctgtagc
     2761 agaagcactg gattgggata aagcatcaat caaattagaa aaagaataca caggtaaaga
     2821 attagagtat gttgtagcac aacatccatt cttagacaga gaatcgttag tgattaatgg
     2881 tgatcatgtt actacagatg ctggtacagg ttgtgtacat acagcaccag gtcacgggga
     2941 agatgactat attgttggtc aaaaatatga attgccagta attagtccaa tcgatgataa
     3001 aggtgtattt actgaagaag gcggccaatt tgaagggatg ttctatgata aagctaataa
     3061 agccgttact gatttattaa cagaaaaagg tgcactatta aaattagact ttattacaca
     3121 tagctatcca cacgactgga gaacaaaaaa acctgtaatc ttccgtgcta caccacaatg
     3181 gtttgcctca atcagtaaag taagacaaga tattttagat gcaatcgaaa atacaaactt
     3241 caaagtaaat tggggtaaaa cacgtattta caatatggtt cgtgaccgtg gcgaatgggt
     3301 tatttctcgt caacgtgtgt ggggtgtacc gttaccagta ttttatgctg aaaatggcga
     3361 aattatcatg acgaaagaaa cagtgaatca tgttgctgat ttatttgcag aacacggttc
     3421 aaatatttgg tttgaaagag aagcgaaaga cttactacca gaaggattta cacatccagg
     3481 cagccctaac ggtacattta ctaaagaaac agacattatg gacgtttggt ttgattctgg
     3541 ttcatcacac cgtggcgtgt tggaaacaag accggaatta agtttcccag cggatatgta
     3601 tttagaaggt agtgaccaat atcgtggttg gttcaactct tctatcacaa cttcagttgc
     3661 tacaagagga gtatcacctt ataaattctt actttctcat ggttttgtta tggacggtga
     3721 aggtaagaaa atgagtaaat ctttaggtaa tgtgattgta cctgaccaag tggttaaaca
     3781 aaaaggtgct gatattgcga gactttgggt aagtagtacg gactatttag ctgatgttag
     3841 aatttctgat gaaattttaa aacaaacatc tgatgtttat cgtaaaatca gaaatacatt
     3901 aagatttatg ttaggtaaca ttaacgattt caatcctgac acagatagca ttcctgaatc
     3961 agagttatta gaagtggatc gttacttgct aaatcgttta cgtgaattta ctgcaagtac
     4021 gattaacaac tatgaaaact ttgactactt aaatatttat caagaagttc aaaactttat
     4081 caatgttgag ttaagtaatt tctatttgga ttacggtaaa gatattttat atattgaaca
     4141 acgtgattct catatccgtc gtagtatgca aacagtgtta tatcaaattt tagttgatat
     4201 gacgaagttg ttagcaccaa tcttagtgca tacagctgaa gaagtttggt ctcatacacc
     4261 acatgttaaa gaagaaagtg ttcacttagc agacatgcct aaagttgtag aagtagatca
     4321 agctttattg gataaatggc gtacatttat gaatttacgt gatgatgtga accgtgcatt
     4381 agaaactgct cgtaatgaaa aagttattgg taaatcatta gaagctaaag ttacgattgc
     4441 tagtaacgat aaatttaatg catctgaatt cttaacttca tttgatgcat tacatcaatt
     4501 atttatcgtg tcacaagtta aagttgtaga taagttagac gatcaggcaa cagcttatga
     4561 acatggtgat attgtcatcg aacatgcaga tggtgaaaaa tgtgaaagat gttggaacta
     4621 ttcagaggat cttggtgctg ttgatgaatt gacgcatcta tgtccacgat gccaacaagt
     4681 tgtaaaatca cttgtataat tgaaattgta taaagtactc atacagatga tataaattaa
     4741 agctctcttc ataatcatgt tgtagttttt gttgacatga tgaagagagt ttttttgtga
     4801 ataaaaaaat gaccaagtta ccggtcatat atgtaaaaaa tgtgcgattt actaaaataa
     4861 aaattattca ggaatggtac aaattctctg aggcatataa atgcgttata gttgctattc
     4921 tcaattatgt tcgcgataat tttaagtaaa agtaagcaca gatattgaat ttgataggag
     4981 ttaattgaat gtatcataac agtaacgcaa actttgtcaa tggtatcact ttaaatgtga
     5041 gagataagaa tgaattaaag ccattttatg aggacatatt aggattaaat attataaatg
     5101 agacattaac atcgatacaa tatgaagtag gtcaaaataa tcatgtcatt acacttgttg
     5161 aattacaaaa tggacgtgaa cctttaatgt ccgaagcggg actgtttcat atcgcaatta
     5221 aactacctca aattagtgat ttagctaatt tactaattca tttaagcgaa tatgatattc
     5281 cagttaacgg aggtatacag cctgcttcgt tatcattatt ttttgaagac ccggaaggaa
     5341 acggttttaa attttatgtt gataaagacg aagcgcaatg gacgaggcaa aataatttag
     5401 taaaaattga tattagacca ttaaatgtac cgagattagt gagtcatgca acaaaattgt
     5461 tatggttagg tattccagat gacgctatta taggtgcatt gcatattaag acaattcatt
     5521 tatcagaggt aaaagagtac tacctcgatt attttggatt agagcaatcg gcatatatgg
     5581 atgattattc aatattttta gcatcgaatg gctattatca acatttggcc atgaatgatt
     5641 gggtatcagc aacgaaacgt gtagaaaatt ttgatacgta tggattagca attgttgact
     5701 ttcattatcc tgaaacaaca catttaaatt tacaaggtcc ggatggtatc tattatcgct
     5761 ttaatcatat cgaagttgaa gattagtata tactttgaat ggacgaacca tataatgaat
     5821 cgtttttaat gatcttttta tacaagttat gaaggaggct gggacattaa gttc
//
LOCUS       DAMQWL010000137         5725 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.140, whole genome shotgun sequence.
ACCESSION   DAMQWL010000137 DAMQWL010000000
VERSION     DAMQWL010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5725
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.140"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..72
                     /locus_tag="PF788_002390"
     CDS             <1..72
                     /locus_tag="PF788_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HDG6304633.1"
                     /translation="QISMEEYLDPFTGEKNKKRKKKE"
     gene            complement(208..1800)
                     /gene="pckA"
                     /locus_tag="PF788_002391"
     CDS             complement(208..1800)
                     /gene="pckA"
                     /locus_tag="PF788_002391"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDG6304634.1"
                     /translation="MSVDTYTETTKIDKLLKKPTSHFQLSTTQLYNKILDNNEGVLTE
                     LGAVNASTGKYTGRSPKDKFFVSEPSYRDNIDWGEINQPIDEETFLKLYHKVLDYLDK
                     KDELYVFKGYAGSDKDTMLKLTVINELAWHNLFAKNMFIRPESKEEATKIKPNFTIVS
                     APHFKADPEVDGTKSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMS
                     MHCSANVGEKGDVALFFGLSGTGKTTLSADPHRKLIGDDEHGWNKNGVFNIEGGCYAK
                     AINLSKEKEPQIFDAIKYGAILENTVVAEDGSVDFEDNRYTENTRAAYPINHIDNIVV
                     PSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKLAGTERGVTEPEPSF
                     STCFGAPFFPLHPTVYADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMV
                     NQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRF
                     EKNFEKLGEKVEHIAEKGSFNK"
     regulatory      1955..2065
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            2171..3364
                     /locus_tag="PF788_002392"
     CDS             2171..3364
                     /locus_tag="PF788_002392"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDG6304635.1"
                     /translation="MLNNKRLFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVAC
                     ETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQS
                     PDIAQGVDKALEYRDKDSEEEIEATGAGDQGLMFGYATNETETYMPLAIYLSHQLAKR
                     LSDVRKDGTLNYLRPDGKVQVTVEYDENDNPVRIDTIVVSTQHAEDVTLEQIQEDIKA
                     HVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCF
                     SGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKV
                     SEGQLVEAVRKHFDLRPAGIIKMLDLKQPIYKQTAAYGHFGRTDVLFPWEKLDKVEEL
                     KDAVK"
     gene            3489..4397
                     /locus_tag="PF788_002393"
     CDS             3489..4397
                     /locus_tag="PF788_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NERD domain-containing protein"
                     /protein_id="HDG6304636.1"
                     /translation="MDLSSPIVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYE
                     QQEQNIKKSHEEALEKERIQNKKTITKQQEDYNHMVSTKDREIDALKLFSKNHSEYVT
                     DMRLIGIRERLVKEKRIRPEDMHIMANIFLPKDGFNNIERISHLVLTRTGLYIIDSQL
                     LKGHVYNGISGGQFKDLPPMEQVFDTLDLDKSRPQTIVMDQNDDKRSLSFVNYSDQIE
                     AIKQLAEDLQKELGAKYTPTSILYFNLKNEGDVTISNYNQNSAVKVLVGAEQLDEFFN
                     KFVFHGRIQYNVEDLQQMMDKIESFN"
     gene            4609..5442
                     /locus_tag="PF788_002394"
     CDS             4609..5442
                     /locus_tag="PF788_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDG6304637.1"
                     /translation="MEVKTFYNGNTMPQIGLGTFRVENDENCMESVKYAIEQGYRSID
                     TAKVYGNEEQVGAGIRAGLESTGIAREDLFITSKLYFEDFGRENVAAAYEASLSRLGL
                     KYLDLYLVHWPGTNEAVMVDTWKGMEDLYKNNNVKNIGVSNFEPEHLEALLAQVSIKP
                     VINQVEYHPYLTQHKLKLYLAAQRIVMESWSPLMNAQILNDETIKDIAQELGKSPAQV
                     VLRWNVQHAVVTIPKSVTPNRISENFQIFDFELSDEQMTRIDGLNQDKRIGPDPKKFE
                     G"
     gene            complement(5505..>5725)
                     /locus_tag="PF788_002395"
     CDS             complement(5505..>5725)
                     /locus_tag="PF788_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDG6304638.1"
                     /translation="DVEPVFGFMKAILGLTRTSVRGINKVKRELGFVLMALNIRKIAA
                     QRAVHYKIHIKKADFYQIINRNQLFYIA"
BASE COUNT         1943 a          888 c         1063 g         1831 t
ORIGIN      
        1 caaatctcaa tggaagaata tttagatcct ttcactggag agaaaaataa aaaaagaaag
       61 aaaaaagagt aaccctttag ggttgctgga atagtagtgc agttggctga cttgtcagtg
      121 cccttttagg gctggccagt aaggaaggct tatagccgca gaacaaacca cccgttcaca
      181 cgggtggttt tgatttagta ttcaaattta tttgttgaag ctaccttttt cagcaatatg
      241 ttcaactttt tcaccaagtt tttcgaagtt cttttcaaaa cgttgaatta aatcttctgc
      301 ttgtgcttta tatttctctt tgtcgctcca agcattaatt ggatttaaaa ttgttttcgg
      361 tacatcttca atttctacag gaatgcttaa accaaacgta ctatcttttg tatattctgc
      421 atttttcaat ttgccagaaa tcgcttggtt taccatttga cgtgtgtaat gtaagctgat
      481 tctacgtcct acaccatatt ttccgccagt ccatccagta ttaacaagat aaacatcaac
      541 atcatgtaaa tcgataagtt cacctaatag atcagcgtaa acagtagggt gtaacgggaa
      601 gaacggtgct ccgaaacatg ttgagaatga tggttcaggt tctgtcacac cacgctctgt
      661 accagctaat ttagaagtga aaccactcaa gaaatgatac attgcttggt ctttatttaa
      721 ctttgaaatc ggtggaataa caccaaatgc atccgcagtt aagaaaataa ttgtatttgg
      781 atgtgctgct ttagatggta ctacaatatt gtcaatgtga ttaattggat aagcggcacg
      841 cgtgttttct gtataacgat tgtcttcaaa gtccactgaa ccatcttctg caactacagt
      901 gttctctaaa attgcaccat atttgattgc gtcaaaaatc tgtggttctt tttctttgga
      961 aagattaatt gcttttgcat agcagccacc ttcgatatta aagaccccgt ttttattcca
     1021 gccgtgttca tcatcaccga ttagtttacg gtgtgggtca gccgataagg ttgttttacc
     1081 agtgccagat agaccaaaga ataatgcaac atcgcctttt tcaccaacgt ttgctgagca
     1141 atgcatgctc ataatatctt gcatcggtaa gagataattc attacagaga agataccttt
     1201 tttcatttca ccagcgtatt cagtaccgcc gattaaaatg actttgtgtt taaatgaaat
     1261 aatgacaaag gtttcagatt tagtaccatc aacttctgga tctgctttaa aatgtggtgc
     1321 agaaacgata gtgaagttag gtttaatctt tgtagcttct tcttttgatt caggtctaat
     1381 aaacatattt ttagcaaata aattatgcca tgctaattca ttgatgactg taagttttaa
     1441 cattgtatct ttatcgctac cagcgtagcc tttaaatacg tatagttcat cttttttatc
     1501 taaatagtct agtactttat ggtataactt caagaaagtt tcttcatcga taggttgatt
     1561 aatttctccc caatcaatgt tatctctata tgaaggttca gagacaaaaa atttgtcttt
     1621 aggcgaacga ccagtatatt ttccagtact tgcattaaca gcaccaagtt ctgttaatac
     1681 cccttcgtta ttgtctaaga ttttattata aagttgtgtc gtcgaaagtt gaaaatgtga
     1741 cgttggtttt ttcagtaatt tgtcaatttt agttgtttca gtgtatgtgt ctactgacat
     1801 cctaaatccc tccaaagcga taatttaaat gtaagccttt acatttaatt agtataacac
     1861 attaacataa ttaatctaca atattttacc gtaaatttat ttgtgaaaaa ttgacattaa
     1921 ttcattaatt aggtactatt atttttaacg gattctctta tcctgagtgg tggagggaca
     1981 tggacccaat gaaacccagc aacctctttt ttataaaaga aaggtgccaa accgtttgca
     2041 gacaaatagg tctgaacgat aagagcgaat ggacgtatta ggccttctct ctatattaat
     2101 agttagaagg tcttttttat ttagctcaca gagagagaat tttcgtaata taaatttaaa
     2161 ggagcaaact atgttaaata acaaacgatt atttacttca gagtctgtta cagaaggaca
     2221 cccagataaa atcgctgacc aagtgtcaga tgcaatatta gatgctattt taaaagacga
     2281 tccaaatgca cgtgtagctt gtgaaacaac tgttacaaca ggtatggcat tgatcgccgg
     2341 cgaaatttct acaacaacat atgttgatat tccgaaagtt gttagagaaa caattaaaga
     2401 aattggatac acaagagcaa aatatggtta tgattatgaa acaatggcaa ttttaactgc
     2461 gattgatgaa caatcacctg acattgcaca aggcgtggat aaagcattag agtatcgtga
     2521 taaagatagc gaagaagaaa ttgaagcaac aggtgcaggt gaccaaggtt taatgtttgg
     2581 ttacgcaacg aatgaaacag agacgtatat gcctctagca atttatttat cacatcaatt
     2641 ggcaaaacgt ttatcagatg tgcgtaaaga tggtacgtta aattatttac gaccagacgg
     2701 taaagttcag gtcactgttg aatatgatga aaatgataac ccagtacgta ttgatacgat
     2761 tgtcgtatca acacaacatg ctgaggatgt gacacttgaa caaattcaag aagacattaa
     2821 agcacatgtc atttatccaa ctgttccaga aaacttgatt aatgaacaaa ctaaattcta
     2881 catcaatcct acaggacgct ttgtaatcgg tggacctcaa ggtgatgcag gattaacagg
     2941 acgtaaaatc attgttgata cgtacggtgg ctatgcacgt catggtggcg gatgcttcag
     3001 tggtaaggat cctacaaaag tagaccgttc agctgcatac gctgcacgtt atgtggctaa
     3061 aaatattgtt gcagcaggtt tagcagatca atgtgaagta caattggcat atgcgattgg
     3121 tgttgcagaa ccagtgtcaa ttgcaattga tacatttgga acaggtaaag tttctgaagg
     3181 gcaacttgtc gaagcagtta gaaaacactt tgacctaaga cctgcaggta ttattaaaat
     3241 gcttgatttg aaacaaccga tttacaaaca aactgctgct tatggtcatt ttggacgtac
     3301 agatgtctta ttcccatggg aaaaattaga caaagtggaa gaattaaaag acgcagtaaa
     3361 ataataagat gaattgaata tagctaaata aaagattttc ggtatataaa tgataatatg
     3421 tatcgaaaat ctttagcttt tctattataa ttaaagttat tcatatatta aaaaggagcg
     3481 ttgttgtgat ggatttatct tcaccgatag tcattggact cattattgca gtagtcattg
     3541 cattaatctt ttttgtcctt tttttagttg ccttaggtag taagaaaaaa gttaagcgac
     3601 aaacagaaga aaagtatgaa caacaagaac aaaacattaa aaagtctcat gaagaagctt
     3661 tagagaaaga gcgtattcaa aataaaaaga caattacaaa acaacaagaa gattataatc
     3721 acatggttag tacaaaagat cgtgagattg acgcattaaa attgttctcg aaaaatcata
     3781 gtgaatatgt aacggacatg agattaattg gtattcgtga aagattagtt aaagaaaaac
     3841 gaattcgacc agaagatatg cacattatgg caaatatctt tttaccaaag gatggcttta
     3901 ataatattga acgaattagt catttagtat taacaagaac tggtctttat attattgatt
     3961 ctcaattgtt aaaaggtcat gtttataatg gtattagtgg cggtcaattt aaagatttac
     4021 caccaatgga acaagtattt gatacattgg atttagataa atctagaccg caaactattg
     4081 tgatggatca aaatgatgac aaacgttcat tatcatttgt aaattattca gatcaaattg
     4141 aggcgattaa acaattggct gaagacttac aaaaagaatt aggtgccaaa tatacaccaa
     4201 cttcaatttt atactttaat cttaaaaatg aaggcgatgt aacgatttca aattataatc
     4261 aaaatagtgc tgtcaaagtg cttgtcggtg ctgaacaatt agacgagttc tttaacaaat
     4321 ttgtattcca tggtcgtatt caatacaacg tggaagactt acaacaaatg atggataaaa
     4381 ttgaatcatt caattaaatg ttaggctgaa gtgatgacta tatgttgtta cttcggcttt
     4441 tttagtttgt cataaattaa acagaattac ttttacaatt tgattaatat ttgagagata
     4501 ttactagaat tttagtggtt gattgctcta agtgtttttt ctcatgtatt caactcagat
     4561 ttgttatgat aacagggtat aatacatcaa aaaggtgagg cgatatttat ggaggttaaa
     4621 acattttata atggaaacac gatgccacaa attggtttag ggacatttcg tgtggaaaat
     4681 gatgaaaatt gcatggaaag tgttaagtat gccattgaac aaggatatcg tagtattgat
     4741 accgcaaaag tttatgggaa tgaagaacaa gtaggtgctg gcattcgtgc cggattggag
     4801 tcaactggta ttgctagaga agacttattt attacttcaa aattatattt tgaggatttc
     4861 ggtcgtgaaa atgtagcagc tgcttacgaa gctagtttat ctagattagg tttaaaatac
     4921 ttagatttgt atctagtaca ttggccaggt acgaacgaag ccgtaatggt tgatacatgg
     4981 aaaggtatgg aagatttata taaaaataat aatgttaaaa atataggtgt cagcaatttt
     5041 gaacctgaac atttggaagc tttgttggca caagtgtcaa ttaaacctgt aattaatcaa
     5101 gttgaatatc atccatattt aacccaacat aaattgaaat tatatttggc agcacaacgt
     5161 atcgtgatgg aatcttggtc accattgatg aatgcacaaa ttttaaatga tgagacaatt
     5221 aaagacattg ctcaagaatt aggaaagtca cctgcccaag ttgttttaag atggaatgtg
     5281 cagcatgctg tggttacaat ccctaaatcg gtgacaccaa acagaatctc tgaaaatttc
     5341 caaatatttg atttcgaatt atcagatgaa caaatgacgc gaattgatgg tttaaatcaa
     5401 gataagagaa ttggacctga tccaaaaaaa tttgaaggct agattaaaat cgctcaactg
     5461 atgaaaaggt tagatgaatt gtcagggctt gggacattaa gttcttaggc aatgtaaaaa
     5521 agctgatttc tattaattat ttgatagaaa tcagcttttt tgatatgtat tttataatgt
     5581 acagctcgtt gagctgctat tttccttata ttaagtgcca ttaatacaaa acctagctct
     5641 cgtttaactt tatttattcc tcgaactgac gttcgagtta aacccaaaat agccttcata
     5701 aatccaaaaa caggctctac atcaa
//
LOCUS       DAMQWL010000138         5585 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.141, whole genome shotgun sequence.
ACCESSION   DAMQWL010000138 DAMQWL010000000
VERSION     DAMQWL010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5585
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.141"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..230
                     /locus_tag="PF788_002396"
     CDS             <1..230
                     /locus_tag="PF788_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (adenine(22)-N(1))-methyltransferase TrmK"
                     /protein_id="HDG6304639.1"
                     /translation="YEIVVAEYSTELIELSSDELKFGPKLLNNKNEYFIKKWQRELEA
                     LYHIKSKLNTEQHHQRLAQINDEIAVIERVL"
     gene            233..1333
                     /locus_tag="PF788_002397"
     CDS             233..1333
                     /locus_tag="PF788_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDG6304640.1"
                     /translation="MKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDVEVTGVLTALD
                     CTLEVVNEAIEKGYNTIISHHPLIFKGVTSLKANGYGLIIRKLIQHDINLIAMHTNLD
                     VNPYGVNMMLAKAMGLKNISIINNQQDVYYKVQTYIPKDNVGPFKDKLSENGLAQEGN
                     YEYCFFESEGRGQFKPVGEANPTIGQIDKIEYVDEVKIEFMIDAYQKSRAEQLIKQYH
                     PYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFVGESNQKI
                     KRIAIIGGSGIGYEYQAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHYSEYVMKE
                     GLKALLMNWFNTEKINLDVEASTINTDPFQYI"
     gene            1447..2793
                     /locus_tag="PF788_002398"
     CDS             1447..2793
                     /locus_tag="PF788_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDG6304641.1"
                     /translation="MAKHPFEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNL
                     IGQSQTGTGKSHAFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGV
                     SVKVFIGGTDIEKDRQRCNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMI
                     DLGLIEDVDYIAARLEDNANIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNI
                     EFYLIPTKGAAKVEKTLNLIDILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGG
                     LTPRERKQQMKRIRNLEFQYVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRT
                     GRGNYKGVAITLYSPDEEHNISLIEDRGFVFNTVDIKDGELKEVKAHNQRQARMRKDD
                     HLTNQVKNKVRSKIKNKVKPGYKKKFKQEVEKMKRQERKQFSKQQNRQKRKQNKKG"
     gene            2803..3693
                     /locus_tag="PF788_002399"
     CDS             2803..3693
                     /locus_tag="PF788_002399"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDG6304642.1"
                     /translation="MLLGSHVSMSGKKMLEGSAIEAHEYGETTFMIYTGAPQNTRRKS
                     IEDLNITKGHEVMEKYGLSNIVVHAPYIINIANTTKPETFNLGVDFLQQEIERTQAIG
                     AKDIVLHPGAHVGAGVDAGINKIIEGLNEVLTNDNNVRIALETMAGKGTEIGRSFEEL
                     ARIIDGVHNNERLSVCFDTCHTHDAGYNVKEDFDGVLNEFDKIIGVDRIKVVHVNDSK
                     NDRGAQKDRHENIGFGYIGFDALNYIVHHDSFKDIPKILETPYVGEDKKNKKPPYKLE
                     IEMLKQQQFDPELKNKVMQQ"
     gene            3819..4604
                     /locus_tag="PF788_002400"
     CDS             3819..4604
                     /locus_tag="PF788_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDG6304643.1"
                     /translation="MRGENTMTPVFELKNVNYYYDHKKVLENINIKINKGEFLAIVGP
                     NGAGKSTLLKLILGLLPLQSGEIFVEGIDFKNKKTSIKLSYVSQKANAFNSGFPASVK
                     EVVLSGLTKTKRLFQTFNSKDNEKVIKVLERLNISDLIHKNIAELSGGQQQRVMIARA
                     LISEPAVLVLDEPTNGIDAKHVSEFYNTLDQLKQEGITIILVTHDIGVVADTATEVAC
                     LNKHLHFHGTTDEFKSLDEVEISKIYGHPVRFVDHQHNRECCN"
     gene            4646..5509
                     /locus_tag="PF788_002401"
     CDS             4646..5509
                     /locus_tag="PF788_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDG6304644.1"
                     /translation="MIDALLNFDFMRYSLISGILIGFIAPLIGAFIVVRRLSLIADAL
                     SHVTLGGISFGMFLLTIMPTLVFINPMWFGILFAIVGALLIEKLRTSYTAYQEIAIPI
                     IMSAGIALSAIFISLADGFNQEIVGLLFGSISAVNISDLTTIIVIAIIVVLFITLFYK
                     ELFILSFDEEYSKVIGIPKWIQFLFIVIVAMVISASMRVVGILLVSALITLPIAISMR
                     ITKSFKQLILLSVFLGELSVILGLVLAFYMDISPGGVIVVLLVILLMITMAYQKMRMK
                     FKKGANINEYK"
     gene            5496..>5585
                     /locus_tag="PF788_002402"
     CDS             5496..>5585
                     /locus_tag="PF788_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDG6304645.1"
                     /translation="MNTNDAIKILKENGLKYTDKRKDMLDIFVE"
BASE COUNT         2047 a          718 c         1035 g         1785 t
ORIGIN      
        1 tttatgaaat tgttgtagca gaatattcta cagaattaat agagctatca tctgatgaat
       61 tgaaattcgg accaaaattg ctgaacaaca aaaatgaata ttttataaaa aaatggcaaa
      121 gagagttaga agcactttat catattaaat cgaaactcaa tactgaacaa catcatcaac
      181 gtttagctca aattaatgac gaaattgctg taattgaaag ggtgttatag taatgaaaat
      241 agctgattta atgacattgt tagatcatca tgtgccattt agtactgctg aatcttggga
      301 taatgtagga ttgttaatag gtgatgaaga tgttgaagtt actggtgttt taacagcatt
      361 agactgtacg ttggaagtag taaatgaagc aatcgaaaaa ggttataata ctattattag
      421 tcatcatcct ctaatcttta aaggcgtaac atcattaaaa gctaatggtt atggtttgat
      481 cattagaaaa ctaattcaac atgacattaa tttaatagcg atgcatacaa atttagatgt
      541 aaatccgtat ggtgtcaata tgatgttggc gaaggcgatg ggtttgaaga acatttcaat
      601 aataaataat caacaagatg tatactataa agttcaaaca tatataccta aggataatgt
      661 tggaccattt aaagataagc ttagtgaaaa tggattagcg caagaaggta attatgaata
      721 ttgtttcttt gaaagtgaag gaagagggca attcaaacca gttggtgaag ctaatccaac
      781 aataggacaa attgataaaa ttgaatatgt agatgaagtt aaaattgaat ttatgataga
      841 tgcatatcaa aagtcaaggg ctgagcaatt aattaaacaa taccatccat atgaaacacc
      901 ggtatttgat tttattgaga taaaacaaac atccctttat ggacttggcg ttatggcaga
      961 agtggataat caaatgacat tggaagattt cgcagctgat attaaatcta aattaaatat
     1021 cccaagtgtc cgttttgttg gtgagtctaa tcagaaaatt aaacgtattg caattattgg
     1081 tggttcaggt attggatatg aatatcaagc tgtccaacaa ggcgcagatg tctttgttac
     1141 aggtgatatt aaacatcatg atgccttaga tgctaaaatt catggtgtga atttaattga
     1201 tattaatcat tacagcgaat atgtgatgaa agaaggttta aaagcgttac taatgaattg
     1261 gttcaataca gaaaaaataa atttagatgt tgaagcatct acaattaata cagatccatt
     1321 tcaatatatt taaactaaaa tctcgggatt tctaaatttt gaaatttcga ggttttaata
     1381 tttttattta aaatagcaca tttatacttt ataatagtaa agatgaacat ataaggaggc
     1441 caaatcatgg caaaacatcc attcgaacaa tttaatctag aatctagttt aattgacgct
     1501 gtgaaagacc ttaattttga aaaaccaact gaaattcaga atcgaattat tccaagaata
     1561 ctaaagagaa caaatttaat tggtcaatct caaacgggta cagggaaatc tcatgcattt
     1621 ttattaccat taatgcagtt aattgatagt gaaataaaag aaccacaagc aatcgtagtt
     1681 gcaccaacaa gagaacttgc acaacaacta tacgatgcag cgaaccattt aagccaattt
     1741 aaagctggtg tttcagttaa agtttttatt ggtggtacag atatagagaa agatagacaa
     1801 cgttgtaatg cacaaccaca attgattata ggcaccccta ctagaattaa tgacttagct
     1861 aaaacgggac atttacatgt gcacttagca tcatatttag ttattgatga agcggatctt
     1921 atgattgact taggattaat tgaagatgta gattacattg ctgcaagatt ggaagataat
     1981 gcaaatattg cggtgtttag tgctacaatc ccacaacagt tacaaccatt tttaaataaa
     2041 tatttaagtc atccagaata tgtagctgtc gacagtaaaa aacaaaataa aaagaacatc
     2101 gaattctatt taatacctac taaaggtgca gctaaagttg aaaagacttt aaatttaatt
     2161 gatatactaa atccatactt atgtattatt ttctgtaata gtagagataa tgcaaatgat
     2221 ttagcacgtt cactaaatga agctggtatt aaagttggta tgattcatgg tggcttaacg
     2281 ccacgtgaac gtaaacaaca aatgaaacgt atacgtaatt tagaattcca atacgttatt
     2341 gccagcgatt tagcatctcg tggtattgat attgaaggtg ttagtcatgt catcaatttt
     2401 gatgtgccaa atgatattga cttctttacg catagagtcg gacgaactgg tcgtgggaat
     2461 tataaaggtg tagcaattac gctttatagt cctgatgaag aacacaatat ttcattaata
     2521 gaagatcgcg gttttgtatt caatactgtt gatattaaag atggtgagtt aaaagaagtt
     2581 aaagcgcaca atcagcgtca agcaagaatg cgcaaagatg accatttaac taatcaagtg
     2641 aagaacaaag ttcgaagtaa aattaaaaac aaagttaaac caggttataa gaagaaattt
     2701 aaacaagaag ttgaaaaaat gaaacgtcaa gagcgtaagc aatttagtaa gcagcaaaat
     2761 agacaaaaac gtaagcaaaa caaaaaaggt taggtgtgtt ttatgttatt aggatcacat
     2821 gtttcaatga gtggtaaaaa gatgttagaa ggttctgcta tagaagcgca tgaatatggt
     2881 gaaacaacat ttatgattta tactggtgca cctcaaaaca cgcgccgtaa aagtattgaa
     2941 gatttaaata taactaaagg tcatgaagtg atggaaaaat atggtttatc taatattgtt
     3001 gttcatgcac catacatcat taatattgca aatacaacca aaccagaaac gtttaatctt
     3061 ggtgtagatt tcttgcaaca agaaattgaa agaacgcaag ctataggggc taaagatatt
     3121 gtattacatc caggtgcgca tgttggagct ggtgttgatg ccggaattaa taagattatt
     3181 gaaggattaa atgaagtttt aacgaatgac aataatgtac gtattgcgct tgaaacgatg
     3241 gcaggtaaag gtacagagat tggtcgctca tttgaagagt tagcacgtat tattgatgga
     3301 gttcataata acgaacgttt atcagtatgt tttgatacat gtcatacgca tgatgctgga
     3361 tataatgtta aagaggactt tgatggcgta ttaaatgaat ttgataaaat cattggagtc
     3421 gacagaatca aagttgttca tgtcaatgat tctaaaaatg accgtggcgc tcaaaaagac
     3481 cgacatgaaa atattggctt cggttacatt ggttttgatg cattaaatta cattgtgcat
     3541 catgatagtt ttaaagatat tccgaaaatc ttagaaacac cttatgttgg tgaagataag
     3601 aaaaataaaa aaccgccata taaacttgaa attgaaatgt taaaacaaca gcaatttgac
     3661 ccagaattaa aaaataaggt tatgcaacaa taaaatgata atgctctctt caagaaatgc
     3721 gataaataaa acttgaaggg ggcatatctc tttattttgt ctaattttga gtcgtaaaca
     3781 ttactgttta catatgttac taggagttgt atagttgaat gcgaggtgag aatacgatga
     3841 caccagtctt tgaattgaaa aatgtcaatt actactatga tcataaaaaa gtgttagaaa
     3901 atataaacat taaaataaat aaaggtgaat ttttagcaat tgttggacca aatggtgctg
     3961 gtaaatcaac attattgaag ttgattctag ggttattacc tttacaaagt ggtgagattt
     4021 ttgttgaagg tattgatttt aaaaataaga aaacatcaat taaattaagc tatgtatcac
     4081 aaaaagcaaa tgcctttaat tcaggtttcc cagcaagtgt taaagaagtt gttttaagcg
     4141 gattaacaaa gacaaaacgt cttttccaaa catttaatag caaagataat gaaaaagtga
     4201 ttaaagtact agaaagactg aatataagtg atttaattca taaaaatata gcagaattat
     4261 caggtggtca acaacaacgt gtaatgattg ctcgagcatt gatttcagaa cctgcagtat
     4321 tagtacttga tgaaccaacg aatggtattg atgcaaaaca tgtaagtgaa ttttataata
     4381 ctttagatca attaaaacaa gaaggtatca ccattatctt agttactcat gatatcggtg
     4441 ttgtagcaga tactgctact gaagtagcat gtttaaataa gcatttgcat ttccatggta
     4501 caactgatga gtttaaatca cttgatgaag ttgaaatttc aaaaatttat ggacatcctg
     4561 tacgttttgt cgatcatcag cataatcgag aatgttgtaa ttaataaaga tttgagttta
     4621 tttaaaatgg aaaggcgtgt cacaattgat agatgcatta ttgaattttg attttatgag
     4681 gtactcttta attagtggta tcttgatagg ttttattgcg cctctaatcg gtgcttttat
     4741 cgttgttaga cgactatcac ttatagctga tgctctaagt catgtaactt taggtggtat
     4801 atctttcggt atgtttttac ttactattat gccaacacta gtatttatta atccaatgtg
     4861 gtttggaatc ttattcgcaa tagtaggtgc gcttctaatt gaaaaattaa gaacgtcata
     4921 cactgcttac caagaaattg ctattccaat tataatgagt gctggtatcg ccttgagtgc
     4981 aatcttcatt tcattagctg atgggttcaa tcaagaaatt gttggattgc tatttggctc
     5041 aataagcgca gtgaatataa gtgatttaac aacgattatt gtcattgcca tcatagttgt
     5101 tctgtttatt acattgtttt ataaagaatt atttatattg tcatttgatg aggaatatag
     5161 taaagtcatt ggcattccta aatggattca atttttattt attgttattg tagcgatggt
     5221 tatttctgcc tcaatgcgtg ttgtagggat actgttagta agtgcgttaa tcacgttacc
     5281 aattgcaata agtatgcgaa taacaaaaag ttttaagcaa ttgatattac taagtgtatt
     5341 tttaggtgaa ttatcagtaa tattaggctt agtcctagct ttctatatgg acatttctcc
     5401 gggtggtgta attgtagttc tacttgttat tttacttatg attacaatgg cttatcagaa
     5461 aatgcgaatg aagtttaaaa agggagctaa tatcaatgaa tacaaatgat gctattaaaa
     5521 ttttaaaaga gaacggttta aaatatacag ataaacgtaa agatatgtta gatatttttg
     5581 tcgaa
//
LOCUS       DAMQWL010000139         5537 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.142, whole genome shotgun sequence.
ACCESSION   DAMQWL010000139 DAMQWL010000000
VERSION     DAMQWL010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5537
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.142"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..353
                     /locus_tag="PF788_002403"
     CDS             <1..353
                     /locus_tag="PF788_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lanthionine synthetase"
                     /protein_id="HDG6304646.1"
                     /translation="KKVMLQVVNDKDENLISPTICHGLSSQILMLTIMNLNFELNEVS
                     DYITVLINKLISHYKEDYLVNFIDINENKQDVFKSRKVGLLEGELGVYLTLMTLKNTK
                     ILNEKNWTNAFLIS"
     gene            369..887
                     /locus_tag="PF788_002404"
     CDS             369..887
                     /locus_tag="PF788_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavoprotein"
                     /protein_id="HDG6304647.1"
                     /translation="MGENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFI
                     NGEILKQFCDNYYDEFEDPFLNHVDIANKHDKIIILPATSNTINKIANGICDNLLLTI
                     CHTAFEKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSIYPANISESYELASKTFKKNV
                     VAPEPYKVLEFI"
     gene            897..2270
                     /locus_tag="PF788_002405"
     CDS             897..2270
                     /locus_tag="PF788_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDG6304648.1"
                     /translation="MKIIKRAIISLIILSLLISITMSNASASEELYYSVEYKNTATFN
                     KLVKKKSLNVVYNIPELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDR
                     TSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKN
                     LVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANGKLIGVAPNNKFTMYRVFGS
                     KKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINY
                     AKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSN
                     LSEFSNFGMNYTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQAGT
                     SLATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSRYGHGELDVYKALN
                     VANQKAS"
     gene            2293..2985
                     /locus_tag="PF788_002406"
     CDS             2293..2985
                     /locus_tag="PF788_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lantibiotic protection ABC transporter
                     ATP-binding subunit"
                     /protein_id="HDG6304649.1"
                     /translation="MAKLVTENISKRFKNQDVLKHINITLENNEVYGLLGINGAGKTT
                     LMKIICGILQQDSGEIKLDNRPMTRNDLHKVGSLIETPATYNHLSAQDNLKIVCLNES
                     VDFSEINSVLSLVNLNVDKKKKVKDFSLGMKQRLGIAMALIKKPEILVLDEPSNGLDP
                     YGIQELRELLKLLTEQGTSIIISSHILSEIQVLADHIGIIHEGELKYQQRNNKDENLE
                     EIFFKITKGDYK"
     gene            2982..3743
                     /locus_tag="PF788_002407"
     CDS             2982..3743
                     /locus_tag="PF788_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lantibiotic immunity ABC transporter MutE/EpiE
                     family permease subunit"
                     /protein_id="HDG6304650.1"
                     /translation="MIHLKIEGIKFKNSFSMYVLLISPLVFLCFAIFTVLFAKSNTGT
                     ANSVSPYITLLFNIWPIAFIPIVLCMACNSLFKIEMRNKSFNYYLSNNWSITKEIRAK
                     IFILSIAFLVHCFLVFIIAYIGDLIINPHPVNAMLLLVTILLMYVVSLPLIPLNFLLT
                     RYFGVFVSILINLVLSVICVLFLTLKSLFWVLPWGIMQRIPLITLGILPNGLVVNHNS
                     KYFNDLNALYISIIVSIIIFAIVTFLNNKKSWRLK"
     gene            3740..4438
                     /locus_tag="PF788_002408"
     CDS             3740..4438
                     /locus_tag="PF788_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BsaG protein"
                     /protein_id="HDG6304651.1"
                     /translation="MIINELKSCKLKFSKQALTFVPIIVTILFILFINWYLNVNLWNG
                     RQISLFTASFNAITSLLISINVYQVINFEENIGHFNHILGKANRLNWLNASMIFTYTI
                     TAICILLASINLLWHSHDMKITLMFIGVSLFFNVIILLLLFIFSIFIKDVMAIVVGVL
                     MFIFNVYFGLEVLGDHSWFYLPITYATRYVYMFIEGSIPVTLTLAIYIIITLLLAVLL
                     FKGFNKWSGRTIKD"
     gene            complement(4912..5478)
                     /locus_tag="PF788_002409"
     CDS             complement(4912..5478)
                     /locus_tag="PF788_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4888 domain-containing protein"
                     /protein_id="HDG6304652.1"
                     /translation="MNTKFLGKTLVASALVLTTLGTGLHSSYLGLDTNKVVKTAKAEE
                     KMTDGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSI
                     DFKGLKQIDLTKENVYDDFNKKLDAKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSSSP
                     VSGKVGEGVTSGGENTLTKRFINKITID"
BASE COUNT         1974 a          704 c          944 g         1915 t
ORIGIN      
        1 ctaaaaaagt gatgctacaa gtagtaaatg ataaagatga aaatttaata agtccaacta
       61 tttgtcatgg attgtcatca caaatattaa tgttaacaat tatgaatttg aattttgaat
      121 taaatgaagt gtctgattat atcactgtat taataaataa actgatttct cattataagg
      181 aagattatct ggtgaatttt atagacatta atgaaaataa gcaagatgta tttaaaagta
      241 ggaaagttgg ccttttagaa ggtgaattag gggtctatct aacattgatg acactgaaaa
      301 atacaaaaat tctcaatgaa aaaaattgga ccaatgcgtt tttaattagc tgaatggagg
      361 cgtatatcat gggagaaaat gtattgattt gtttgtgtgg ctcagttaat agtatcaata
      421 ttagccacta tattattgaa ttaaaatcaa aatttgatga agtaaatgta atcgcgtcaa
      481 caaacggtag aaagtttatt aatggtgaaa tattaaagca attttgcgat aactattatg
      541 acgaatttga agaccctttt ttaaatcatg tagatatagc aaataaacat gacaagatta
      601 ttattttacc tgcgacttct aatacgatta ataaaattgc aaatggtata tgtgacaatt
      661 tattattaac tatttgtcat acagcttttg aaaaactttc tatatttcca aatatgaatt
      721 tacgaatgtg ggaaaatcca gttactcaaa ataatattcg attattaaaa gattatggtg
      781 tatcaatata tccagcaaat atttcagaaa gttatgaatt agcgtcaaaa acatttaaaa
      841 agaatgttgt cgcacctgaa ccatataaag ttctggaatt catttgagat tagaatatga
      901 aaatcataaa gcgcgctatt attagtttaa taatattgag tcttttaata tctattacaa
      961 tgagtaatgc atcagcgtca gaagaactat attacagtgt tgaatacaaa aatacagcaa
     1021 catttaacaa gttagttaaa aagaagtcct taaacgttgt ctataatata ccggaattac
     1081 atgtggcaca gattaaaatg acgaaaatgc atgctaatgc tttagcaaac tataaaaatg
     1141 atattaaata tatcaatgcc acatgttcaa cttgtattac tagcgagaaa acaatagaca
     1201 gaacatcaaa tgagtcatta ttttcaagac aatgggatat gaataaaata accaataatg
     1261 gtgcatcgta tgatgatttg ccaaaacatg ctaacaccaa aatagcaatc atagatacag
     1321 gtgtgatgaa aaaccatgac gatttgaaaa ataatttctc gactgattct aaaaatttag
     1381 tacctttaaa cggttttaga ggtactgaac cggaggaaac aggtgatgtt cacgatgtca
     1441 atgataggaa aggacatggc acgatggtgt cgggtcaaac gagtgctaat ggtaagttaa
     1501 taggtgttgc accgaataac aaatttacaa tgtatcgcgt gtttggtagt aaaaaaacag
     1561 aactgctttg ggtatcaaaa gcgattgttc aagctgcaaa tgatggaaat caagtcatta
     1621 atattagtgt tggtagttat attattttgg acaaaaatga ccatcaaaca tttagaaaag
     1681 atgaaaaagt agaatacgat gcgttacaga aagcaatcaa ttacgccaag aagaaaaaat
     1741 ctatcgttgt tgctgcagct ggtaatgatg gtattgatgt caatgacaaa cagaaactaa
     1801 aattacagcg tgaatatcaa ggtaatggcg aagtgaaaga tgttcctgca tctatggaca
     1861 atgtcgttac agtaggatct acagatcaaa agagtaatct atctgagttt tccaattttg
     1921 gtatgaatta tacagatatt gctgcgcccg gaggatcatt tgcttattta aatcaattcg
     1981 gtgtggataa atggatgaat gaagggtata tgcataagga gaacatttta actactgcca
     2041 ataacggaag atatatttat caagctggaa cttcattagc cacacctaaa gtttcgggag
     2101 cactagcttt aatcattgat aaatatcatc ttgaaaaaca tccagataaa gcgattgaat
     2161 tgttatatca gcatgggaca tctaagaata ataaaccatt tagtagatat gggcatggtg
     2221 agcttgatgt gtataaagca ttaaatgtag caaatcaaaa agcaagttaa taaatcaaag
     2281 gagtttttga ttatggcaaa attagttact gaaaacattt cgaagcggtt taaaaatcaa
     2341 gatgtattaa agcatattaa tatcacttta gaaaataacg aagtttatgg attacttggt
     2401 attaatggag ccggtaaaac gacacttatg aaaattatat gtggcatact tcaacaagat
     2461 tcaggggaaa ttaaattaga taatagacca atgacacgaa atgatttgca caaagttggt
     2521 tcgcttattg aaacacctgc gacatataat catttaagtg cacaagataa tttgaaaatt
     2581 gtgtgtttaa atgaaagcgt tgatttcagc gaaattaata gtgttttaag cttagtcaat
     2641 ttaaatgtcg ataaaaagaa aaaggttaag gacttttctt taggtatgaa acaaagactt
     2701 ggaattgcaa tggcattaat taaaaagcca gaaattttag tattagacga accatctaat
     2761 ggtttagacc catatggaat ccaagaactt agagaacttc taaaattatt aacagaacaa
     2821 ggtactagta ttattatttc aagtcacatt ttatctgaaa tccaagtttt agcagatcat
     2881 atcggtatta ttcatgaggg tgagctaaaa tatcagcaaa gaaataacaa agatgaaaac
     2941 ttagaagaga tattcttcaa aataacgaaa ggtgattaca aatgatacat ttaaagatag
     3001 aaggtatcaa atttaaaaat tctttcagta tgtatgtttt attaataagt ccgctggtat
     3061 ttctttgttt tgctattttc acagtcttat tcgccaaaag taatacggga acagcgaata
     3121 gtgtgtcacc atatataact ttactattta atatttggcc aattgctttc atcccgattg
     3181 tattatgtat ggcttgtaat tcgttattta aaattgaaat gagaaataaa tcatttaatt
     3241 attacttaag taataattgg tcgattacaa aagaaataag agcaaagatt ttcattttat
     3301 caatagcatt tttggtacat tgctttttag tatttattat tgcttatata ggtgacctaa
     3361 ttattaatcc acatccggtt aatgctatgt tgttattggt gacaatattg ttgatgtatg
     3421 tagtatctct accattgata ccgctcaact ttttattaac tcgatacttt ggtgtgttcg
     3481 tatcaatatt aataaactta gtattatcag tcatttgtgt cttgttttta acattgaaga
     3541 gtttattttg ggtgttgccg tgggggataa tgcagagaat cccgcttatt acgcttggta
     3601 tactacctaa tggtttagtt gtaaaccata attcaaaata ctttaatgat ctcaatgcct
     3661 tatatatttc gattattgtt agcatcatta ttttcgcgat agtaacattt ttaaataata
     3721 agaaaagttg gcgattaaaa tgataattaa cgaattaaag tcatgtaagt tgaaattttc
     3781 taagcaagcg ctcacatttg tacccattat tgtaaccata ttgtttatat tatttataaa
     3841 ttggtattta aacgtaaatt tatggaatgg tcgacaaata agtttgttta cagcgagttt
     3901 taatgcaatt acatcgctat taatttctat aaacgtctat caagttatca attttgaaga
     3961 aaatattggt cactttaatc atattttagg aaaagctaat aggctaaatt ggttaaatgc
     4021 atcaatgatt tttacttata ctattacagc catatgtatt ctattagcat caattaattt
     4081 attgtggcat tcacatgata tgaaaataac acttatgttt ataggcgtat cattgttttt
     4141 caatgtaatt atattactgc tactttttat ttttagtatt ttcattaaag atgtaatggc
     4201 tattgttgtc ggagttttaa tgtttatttt taacgtttat tttggattag aagtgcttgg
     4261 agatcattcg tggttctatt taccaatcac atatgctaca cgttacgttt atatgtttat
     4321 cgaagggagt ataccagtta cattaacatt ggcaatctat attattatca cgttgctatt
     4381 agcagtttta ctctttaaag gatttaataa atggagcggt agaacaatta aagattaaag
     4441 attggggctc taacggtaaa agaaatttag ttgcgttgaa aagggaggaa agagaacagt
     4501 taaatatgaa tacaaaataa ttttgttttc ggacagcagg ggtattagac gcgattgaca
     4561 atgtctgttt aattaaacgt aatgtttatt taagcgatga atattaggtg aaaagttttt
     4621 gaatttgaat gtaattgagg tttattgatt agacatttta ttgaattgcg tgttattata
     4681 taaatgtaaa aataagacga catgcgcgaa catgtcgtct aagcaagcca aacgctggct
     4741 tctaaaatat ttttttaacc attccaactt gccaaagtta atgcggaatg gtttttttat
     4801 tttccgctaa ttgaaataaa aatgacgttt taatatatta tgggctaggt ggtttgtaag
     4861 aaagggttag ttattaatgt tttatgaatt aaggaaattt gagtttaagg tttaatcaat
     4921 tgtgattttg ttgatgaagc gtttagttag agtattttcg ccaccactag ttactccttc
     4981 tcccacttta cccgagactg gagaagagct atctgaagaa taaatagata ctttttggcc
     5041 attttgtagt aaaccaagac cttttaactt ctcggttaga gaattccatg tatttttagc
     5101 atctagcttt ttgttaaagt catcgtagac attttcctta gttaaatcaa tttgttttaa
     5161 tcctttaaag tctatagatt gtgttagatg gcctccatca tcatttccag gagcagaaac
     5221 gctgctagaa tatccattgc ttaataaata agtaacgttg attgtttcgt actcgttact
     5281 taaaataata tcagaatcat gtaatgaatc tttaactttt ttccataatt gaccatctgt
     5341 cattttttct tctgctttag ccgttttaac aactttattt gtatctaatc ctaagtatga
     5401 agaatgtaag cctgttccta atgttgttaa tactaaagca cttgctacta atgttttacc
     5461 taaaaatttt gtattcattt ttattgctcc tttttttata ttgtaaacgt ttacaatgaa
     5521 aatataataa taatttt
//
LOCUS       DAMQWL010000140         5496 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.143, whole genome shotgun sequence.
ACCESSION   DAMQWL010000140 DAMQWL010000000
VERSION     DAMQWL010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5496
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.143"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            111..2558
                     /locus_tag="PF788_002410"
     CDS             111..2558
                     /locus_tag="PF788_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000884880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence-associated E family protein"
                     /protein_id="HDG6304653.1"
                     /translation="MLDKVTQIETIKYDRDVSYSYAASRLSTYWTNHNMAWSDFMQKL
                     AQTVRTKEDLTEYNKMSKSEQADIKDVGGFVGGYLKEGKRRAGQVMNRSMLTLDIDYA
                     AQDMTDILSMFYDFAYCLYSTHKHREISPRLRLVIPLKRNVNADEYEAIGRKVADIVG
                     MDYFDDTTYQPHRLMYWPSTSNDAEFFFTYEDLPLLDPDKILNEYVDWTDTLEWPTSS
                     KEESKTKRLADKQGDPEEKPGIVGAFCRAYTIEEAISTFIPDLYEKHSTNRYTYHEGS
                     TAGGLVLYENNKFAYSHHNTDPVSGMLVNSFDLVRIHLYGAQDEDAKTDTPVNRLPSY
                     KAMQQRAQNDEVVKKQLINDKMSDAMQDFDEIVNSDDAWSETLEITSKGTFKASIPNI
                     EIILRNDPNLKGKIAFNEFTKQIECLGKVPWNTNFKTRQWQDGDDSSLRSYIEKIYDI
                     HHSGKTKDAIISVAMQNAYHPVRDYLNKISWDGHKRLEKLFIKYLGVEDTEVNRTTTK
                     KALTAGIARVMEPGCKFDYMLTLYGPQGVGKSALLKKLGGAWFSDSLVSVTGKEAYEA
                     LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGTTNKV
                     DFLRDETGGRRFWPMTVNPERVEVNWSKLTKEEIDQIWAEAKYYYEQGEELFLNPELE
                     EEMRSIQSKHTEESPYTGIIDEYLNTPIPSNWDDLTIFERRRFYQGDVDMLPTGNVDY
                     VERNKVCALEVFVECFGKDKGDSRGSMEIRKISNILRQLDNWSVYDGNKSGKIRFGKD
                     YGVQIAYVRDESLEDLI"
     gene            complement(2667..2765)
                     /locus_tag="PF788_002411"
     CDS             complement(2667..2765)
                     /locus_tag="PF788_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304654.1"
                     /translation="MNLMQHWKQTGLNLTARRERGVVSFVASMLHH"
     gene            2899..3189
                     /locus_tag="PF788_002412"
     CDS             2899..3189
                     /locus_tag="PF788_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VRR-NUC domain-containing protein"
                     /protein_id="HDG6304655.1"
                     /translation="MKESTLEKYLVKEISKLNGLCLKWVAPGTRGVPDRIIIMPEGKT
                     YFVEMKQEKGKLHPLQKYVHRQFENRDHKVYVLWNKEQVNTFIRMVGGTFGD"
     gene            3170..4537
                     /locus_tag="PF788_002413"
     CDS             3170..4537
                     /locus_tag="PF788_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDG6304656.1"
                     /translation="MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTA
                     FSELQLLDTKKMLVIAPKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEA
                     DIYVTNKENTKWLCDQYKKEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGL
                     TGTPSPNSLQDLWAQVYLIDRGERLESSFSRYRERYFKPTHQVSEHIFKWELRDGSEE
                     KIYKQIEDICLSMKAKDYLDMPDRVDTKQTVVLSEKERKVYEELEKNYILESEEEGTV
                     VAQNGASLSQKLLQLSNGAVYTDEEDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKH
                     DKERILQRFKEATTLDDSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLT
                     WSLELYQQANARLYRQGQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIKAR
                     IAKHK"
     gene            4550..4987
                     /locus_tag="PF788_002414"
     CDS             4550..4987
                     /locus_tag="PF788_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDG6304657.1"
                     /translation="MGNTIYDIKPGTFKYIESEIYNLNENKKEIKRLRLEILNPTKEQ
                     DSNIVYGPLQKGEPVRTTELMATRLLTNKMLRNLEEMVEAVESEYLKLPEDHKKVIRL
                     KYWNKEKKLKMEQIGHECHMHRNTVTTIRKNFVKAVAYHAGIK"
     gene            5144..5458
                     /locus_tag="PF788_002415"
     CDS             5144..5458
                     /locus_tag="PF788_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDG6304658.1"
                     /translation="MTKHNNIYKHGRKSYQYDWFYHSKAWKKLREIALDRDNHLCQMC
                     LREDIVTDANIVHHIIYVDEDFNKALELDNLMSVCYGCHNKIHANGNDKSNLKKIRVL
                     KI"
BASE COUNT         2099 a          746 c         1080 g         1571 t
ORIGIN      
        1 gttctcaagt tttcattttc gtatttatca taaatgattt cgcgtaaagt tttcaaaatt
       61 tgtcacctct ttaattttat taaattaatt atacaagaaa ggagccgaat atgttagaca
      121 aagtcactca aatagaaaca attaaatatg atcgtgatgt ctcatattct tatgctgcta
      181 gtcgtttatc cacatattgg actaatcaca atatggcttg gtctgacttt atgcagaagc
      241 tagcacaaac agttagaact aaagaagatt taactgagta caataaaatg tctaagtctg
      301 aacaagcaga tataaaagat gttggcggat ttgtcggtgg atatttaaaa gaaggcaaac
      361 gacgtgctgg tcaagtcatg aatcgttcaa tgctaacact tgatatcgat tatgctgctc
      421 aagatatgac tgacatatta tctatgtttt atgattttgc atattgttta tattcaacac
      481 ataagcatag agagataagt ccaagactgc gtttagtgat tcctttaaaa cgaaatgtaa
      541 atgcagatga gtatgaagct attgggcgta aagtcgcaga tatcgttggc atggattact
      601 tcgatgatac aacttatcaa ccacataggt taatgtattg gccttcaact agcaatgatg
      661 cagaattttt ctttacctat gaagatttac ctttgttaga tccagataaa atattaaatg
      721 aatatgttga ttggactgac acattagaat ggccaacgtc ttcaaaggaa gagagtaaga
      781 ctaaaagatt agcagataag caaggtgacc cagaagaaaa gccgggaatt gttggcgcat
      841 tttgtagagc ctatacgata gaagaagcta tatcaacttt tattcctgac ttatacgaaa
      901 aacattctac taaccgttat acctatcatg aaggttcaac tgcaggtgga ttggtgttat
      961 acgaaaataa caagtttgcc tattctcatc ataatacgga tcccgttagc ggtatgcttg
     1021 tgaacagttt tgatttagta cgcatacact tatatggtgc tcaagatgaa gacgctaaaa
     1081 cagatactcc ggttaatcga ctacctagtt ataaagcaat gcagcaaaga gcgcaaaatg
     1141 atgaagttgt taaaaagcaa ttaattaacg acaaaatgtc tgatgcaatg caggatttcg
     1201 atgaaatagt aaatagcgat gatgcatggt ctgagacgtt agaaattact tcgaaaggta
     1261 ctttcaaagc tagtatccca aatatagaaa ttatattgcg taatgatcca aatttaaaag
     1321 gaaaaatagc atttaatgaa tttacaaaac aaattgaatg cttagggaaa gtgccatgga
     1381 atactaattt taagacacgt caatggcaag acggtgatga tagcagttta agaagttata
     1441 tcgaaaagat ttatgacata caccattcag gtaaaacaaa agatgccatt ataagcgtag
     1501 caatgcaaaa tgcttatcat ccagtaaggg attatctaaa taaaatatcg tgggatggac
     1561 ataaacgtct tgaaaagtta tttatcaaat acttaggtgt tgaagatact gaagtgaata
     1621 gaacaactac caaaaaagca ttgactgctg gaattgctcg agtaatggag cctggatgta
     1681 aatttgacta tatgcttaca ctttatggtc ctcaaggtgt aggtaaatct gctttgctaa
     1741 aaaaattagg tggtgcatgg ttttctgaca gtttagtttc tgttacaggt aaagaagcct
     1801 atgaggcctt acaaggcgtt tggctaatgg aaatggcaga acttgcagct acaagaaaag
     1861 ctgaagttga agctattaag catttcatat ctaaacaagt tgaccggttt cgtgttgctt
     1921 atggacatta tattgaagat tttccaaggc aatgtatttt cattggtaca actaataaag
     1981 ttgatttctt aagagatgaa actggtggaa gacgtttttg gccaatgact gtaaatccag
     2041 agagagttga agtgaactgg tctaaactaa ccaaagaaga gatcgaccaa atttgggcag
     2101 aagctaaata ttattatgaa caaggagaag agttattcct caaccctgaa ctagaagaag
     2161 aaatgcgttc aatacaaagc aaacatactg aggaatctcc atatacaggc attattgatg
     2221 aatatcttaa cacaccaatt cctagcaatt gggatgactt aactatcttt gaacgaagac
     2281 gattttatca aggtgatgtt gatatgttac caacaggaaa tgtagattac gttgaaagaa
     2341 ataaggtctg tgcgcttgaa gtgtttgttg aatgttttgg taaagataag ggagatagta
     2401 gaggatctat ggaaattaga aagatttcaa acatcttaag acaattagac aattggtctg
     2461 tatatgatgg taataaaagt gggaaaattc gatttggaaa agattatggt gtacagatag
     2521 cttatgtaag agatgaaagt ttagaagatt taatataata aatattgaat aaatatacat
     2581 tttagagtgt tgtatcagat gttgcatcat tttttgagtg atgcaacacg tgagtgtaaa
     2641 aagtaatcgt aggtgttgca tcatttttag tgatgcaaca ttgatgcaac aaatgataca
     2701 acacctcttt cccttctcgc tgtaaggttc aaccctgttt gtttccaatg ttgcatcaaa
     2761 ttcactataa agtttaaaaa gtagtgttag ggagtaaaga ggtatagggg taaccctcta
     2821 acagctattt ttaaaagttt ggcaagaatt gatgcaacat cggaacacaa atataaattt
     2881 tgtatacaag gtgaatatat gaaagaatcg acattagaaa aatatttagt gaaagagata
     2941 tcaaagctaa acggtttatg tttaaaatgg gttgcacctg gaacaagagg tgtgccagat
     3001 agaattatta ttatgccaga aggaaaaaca tattttgtag aaatgaagca agaaaaagga
     3061 aagttgcatc ctttacaaaa atatgtgcat agacaatttg aaaatagaga tcataaagta
     3121 tatgtgttat ggaataaaga acaagtaaat acttttatca gaatggtagg tggaacattt
     3181 ggcgattgac ttcaaaccac atagctatca aaagtatgca atagataaag tgatagataa
     3241 tgagaaatac ggtctgtttt tagatatggg tctagggaaa acagtatcaa cacttacagc
     3301 atttagtgaa ttgcagttgt tagacactaa aaaaatgtta gttatagcac ctaaacaagt
     3361 tgctaaagat acatgggttg atgaagttga taagtggaac catttaaatc atctgaaagt
     3421 gtctttagtt ttaggaacac ctaaagaaag aaatgatgca ttaaacacag aggctgatat
     3481 ctatgtaacc aataaagaaa atactaaatg gttatgtgat caatataaaa aagaatggcc
     3541 atttgacatg gttgtgattg atgaactgtc tacatttaaa agtcctaaga gtcaaaggtt
     3601 taaatctatt aaaaagaaat taccactcat taatagattt ataggattaa caggaacacc
     3661 tagtccaaat agtttacagg atttatgggc tcaagtttat ttgatagaca gaggtgaaag
     3721 acttgagtct tcattcagtc gttatcgaga aaggtacttt aaaccaactc atcaagttag
     3781 cgaacatatt tttaagtggg agctaagaga cggatctgaa gaaaagatat ataaacaaat
     3841 agaagatata tgtttaagca tgaaagcgaa agattatctg gatatgcctg acagagttga
     3901 tactaaacaa acagtagtct tatcagaaaa agaaagaaaa gtatatgaag aattagaaaa
     3961 aaactatatt ttagaatcgg aagaagaagg aacagttgta gctcaaaatg gggcatcatt
     4021 aagtcagaaa ctacttcaac tatctaacgg cgcagtttat acagatgagg aagatgtaag
     4081 acttatacat gataagaagt tagataagtt agaggaaatt atagaggagt ctcaaggcca
     4141 accaatacta ttgttttata acttcaaaca cgataaagaa agaatacttc aaaggtttaa
     4201 ggaagcaacc acattagacg attcaaacta taaagaacgt tggaacagtg gagacattaa
     4261 gttgcttata gcacatccag caagtgcagg acatggatta aacttacaac aaggtgggca
     4321 cattattgtt tggtttggac ttacatggtc cttggaatta taccaacaag caaatgctag
     4381 attatacaga caaggacaaa atcatacgac tattattcat catatcatga ccgataacac
     4441 aatagatcaa agagtatata aagctttaca aaataaagaa ctaacgcaag aagaattaat
     4501 gaaagctatt aaagcaagaa tagctaagca taagtaatgg aggtctaaca tggggaacac
     4561 aatatatgat atcaagccag gcacatttaa atatattgaa tcagaaatat ataatttaaa
     4621 tgagaacaag aaagaaataa aaagattgag gttggaaata cttaatccaa cgaaggaaca
     4681 agattccaat attgtatatg gaccattaca aaaaggcgaa ccagttagaa caactgaact
     4741 aatggcaact agattattaa ctaataagat gttacgaaac cttgaagaaa tggtcgaagc
     4801 agttgagagt gaatacttaa agttgcctga agatcataag aaagtaataa ggctcaagta
     4861 ttggaataaa gaaaagaagt taaagatgga acagatagga catgaatgcc atatgcatcg
     4921 taatactgtt actactatac gaaagaactt tgttaaagcg gtagcgtatc atgcaggtat
     4981 caaataacat tgtgcaaaga ttgtgcaaaa ggcctacaaa tctgtagtaa tatgatagta
     5041 tcggaaagat gtataaagtt atctaaaagt tatacgacac aagtacacga ggcacatcgc
     5101 tatgcggtgt gtcttttgtt atgcaatcaa agaggtgtaa gagatgacca agcacaataa
     5161 catttataag catggtcgta agtcatatca atacgattgg ttctatcatt caaaagcatg
     5221 gaagaagtta agggagatag cattagatag agataatcat ctttgtcaaa tgtgtttacg
     5281 cgaagatatt gtaacagatg caaacatagt gcatcacatt atttatgttg atgaagattt
     5341 taacaaagct ttagaattag ataatctaat gtcagtttgt tatggctgtc ataacaaaat
     5401 tcatgcaaat ggtaatgaca aaagtaatct taagaaaatt agagttctaa aaatttaaat
     5461 aaaaaaacat ttaaataaaa ttttatagcc ccctgc
//
LOCUS       DAMQWL010000141         5494 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.144, whole genome shotgun sequence.
ACCESSION   DAMQWL010000141 DAMQWL010000000
VERSION     DAMQWL010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5494
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.144"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(256..1527)
                     /locus_tag="PF788_002416"
     CDS             complement(256..1527)
                     /locus_tag="PF788_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDG6304659.1"
                     /translation="MNYLESLYWIHERTKFGIKPGVKRMEWMLAQFNNPQNNIKGIHV
                     GGTNGKGSTVAYLRTALVENGYEVGTFTSPFIETFNERISLNGVPISNDAIVELVSRI
                     KPVSEMMERETDLGVATEFEIITAMMFLYFGEIHPVDFVIVEAGLGIKNDSTNVFTPV
                     LSILTSIGLDHTDILGGTYLDIARDKGAIIKPNVPVIYAVKNEDALKYVRERAIEQHA
                     KPIELDREIVVVSQNDEFTYRYKDYELETIILSMLGEHQKQNAALAITALIELNEQGL
                     IELDFNKMIDGIESVRWTGRIEQVHDKPLIILDGAHNSESIDALIDTIKQYHDKEKVD
                     ILFSAINGKPINEMVKHLSLIAHTFYATEFDFPKALRKEEIVGSIENDEIQLVDDYVE
                     FIKNYQGDTLVITGSLYFISEVKSKLDFEAL"
     gene            complement(1540..4170)
                     /locus_tag="PF788_002417"
     CDS             complement(1540..4170)
                     /locus_tag="PF788_002417"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDG6304660.1"
                     /translation="MEMKPKYDPREVEAGRYEEWVKNGYFKPSEDKSKETYTIVIPPP
                     NVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKLNEQGIT
                     RYDLGREKFLEQAWDWKEEYASFIRAQWAKLGLGLDYSRERFTLDEGLSKAVKKVFVD
                     LYNKGIIYRGERIINWDPKARTALSDIEVIHEDVQGAFYHFKYPYADGEGFIEIATTR
                     PETMLGDTAIVVNPNDERYKDVIGKTVILPIVGRELPILADEYVDIDFGSGAMKVTPA
                     HDPNDFEIGQRHQLENIIVMDENGKMNDKAGKYEGMDRFDCRKQLVKDLKEQDLVIKI
                     EDHVHSVGHSERSGAVVEPYLSTQWFVRMEDLAKRSLDNQKTDDRIDFYPQRFEHTFN
                     QWMENIRDWTISRQLWWGHQIPAWYHKETGEIYVGEEAPTDIENWQQDEDVLDTWFSS
                     ALWPFSTLGWPDLESEDFKRYYPTNALVTGYDIIFFWVARMIFQGLEFTDRRPFNDVL
                     LHGLVRAEDGRKMSKSLGNGVDPMDVIDEYGADSLRYFLATGSSPGHDLRYSTEKVES
                     VWNFINKIWNGARFSLMNIGEDFKVEDIDLSGNLSLADKWILTRLNETIATVTDLSDK
                     YEFGEVGRALYNFIWDDFCDWYIEMSKIPMNSNDEEQKQVTRSVLSYTLDNIMRMLHP
                     FMPFVTEKIWQSLPHEGDTIVKASWPEVRESLIFEESKQTMQQLVEIIKSVRQSRVEV
                     NTPLSKEIPILIQAKDKEIETTLSQNKDYLIKFCNPSTLNISTDVEIPEKAMTSVVIA
                     GKVVLPLEGLIDMDKEISRLEKELAKLQSELDRVDKKLSNENFVSKAPEKVINEEKRK
                     KQDYQEKYDGVKARIEQLKA"
     misc_binding    complement(4214..4515)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            4573..5133
                     /locus_tag="PF788_002418"
     CDS             4573..5133
                     /locus_tag="PF788_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDG6304661.1"
                     /translation="MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGL
                     SWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGY
                     LKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPV
                     TVFSFLEAAGLYDAHLQDCPSKPKHN"
     gene            complement(5356..>5494)
                     /locus_tag="PF788_002419"
     CDS             complement(5356..>5494)
                     /locus_tag="PF788_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HDG6304662.1"
                     /translation="LVALATGADVAMITSYHIFRIFFILFIIAPGINYFLKYRSNKRE
                     D"
BASE COUNT         1750 a         1060 c          746 g         1938 t
ORIGIN      
        1 atgtaaatta tagttagtta ttaccaaaat gtaaatatac actatttttc aagaattgaa
       61 ccgctttttc atttaaattt ttcaatattg ctaagcataa ttgatggata ctttaacaac
      121 ccattactgc tcggcaaaat taataatggc aagaaattga accttataaa cacatacgat
      181 ttagagcata aaaaataacc atgaagctct acctattgat taaatagatt cttcatggct
      241 attttagttt tagttttata atgcttcaaa gtctaatttt gatttaactt cacttatgaa
      301 atacagacta ccggtaatta ctaatgtatc accttgataa ttttttataa attcaacgta
      361 gtcatctact aattgtattt catcattttc aatactacct acaatttctt ctttgcgtaa
      421 cgctttcgga aaatcaaatt cagttgcata aaacgtatgc gcaattaaac ttaaatgttt
      481 gaccatctcg ttaatcggtt ttccgtttat tgctgagaac aaaatatcta ctttttcttt
      541 atcatggtac tgtttaattg tatcaattag agcatctata ctctctgaat tatgtgcgcc
      601 atccaaaatg attaaaggtt tgtcatgcac ctgctcaata cgtccagtcc aacgaactga
      661 ttcaataccg tctatcatct tattgaaatc taattcaatt aatccttgtt catttaattc
      721 aataagagct gttatggcta atgcagcatt ttgtttctga tgttcaccta acatgcttaa
      781 aatgattgtt tctaattcat aatctttata acggtaagta aattcatcat tttgcgatac
      841 aacaacaatt tctctatcta attcaattgg ctttgcatgt tgttcaattg cgcgttcacg
      901 aacatatttt aatgcatctt catttttaac agcatatatc actggaacgt taggctttat
      961 aatcgcgcct ttatccctag caatatctag ataagtacca cctaaaatat ctgtatggtc
     1021 tagaccgata ctagttaaga ttgataaaac cggtgtaaag acatttgtcg aatcgttctt
     1081 tatacccaat ccagcctcaa caatgacaaa atcaacagga tgtatttcac caaaatataa
     1141 aaacatcatc gctgtgatta tttcgaattc agttgcaaca cctaaatctg tttcacgttc
     1201 catcatttca cttactggtt taatacgtga tactaattct acaatagcgt catttgatat
     1261 tggcacacca tttagactaa ttcgttcatt aaatgtttca ataaacggcg acgtaaatgt
     1321 acctacttca taaccatttt caactaaagc tgttctaagg taagcaactg tagagccttt
     1381 accatttgtg ccacctacat gaataccctt aatgttattt tgaggattat taaattgtgc
     1441 tagcatccat tccatacgtt taacacctgg tttgatgcca aatttagttc tttcgtgtat
     1501 ccaatacaag ctctctaggt aattcattgt tactaactcc tatgctttta attgttcaat
     1561 tcttgccttc acaccatcat atttttcttg ataatcttgt tttttacgtt tttcttcatt
     1621 tataaccttt tcaggtgctt tacttacaaa gttttcatta gagagctttt tatctactct
     1681 atctaattcg ctttgaagtt tagctaattc tttttccaaa cggctgattt ccttatccat
     1741 atcaattagc ccttctaatg gtaataccac tttacctgca attacaactg atgtcattgc
     1801 tttctcagga atttccacgt cagtgctaat atttaaggta ctaggattac agaatttgat
     1861 taaataatct ttgttttgtg ataaagttgt ttcaatttct ttatctttag cttgaattaa
     1921 aataggtatt tctttagaca atggcgtatt tacttctaca cgtgattgtc ttacagattt
     1981 aatgatttca acaagttgtt gcattgtttg tttactttct tcaaaaatca atgattcacg
     2041 cacttctggc catgaagctt taacaattgt gtcaccttca tgtggtaaac tttgccatat
     2101 tttctctgtt acaaatggca tgaatggatg tagcattctc ataatattgt ctaaagtata
     2161 actcaatact gaacgtgtaa cttgtttttg ttcttcatca ttactattca ttggaatttt
     2221 actcatttca atgtaccaat cacagaaatc atcccaaatg aaattatata atgcacgtcc
     2281 aacttcgccg aattcatatt tgtcacttaa atcagtaact gttgcaatcg tttcatttaa
     2341 acgtgttaga atccatttat ctgctaatga taagttacca cttaaatcga tatcttcaac
     2401 tttaaagtct tcaccgatat tcattaaact gaaacgtgcc ccattccaga ttttattgat
     2461 aaagttccac actgactcaa ctttttcagt tgagtatctt aaatcatgtc ctggagatga
     2521 acctgttgct aagaagtaac gcaagctatc agcaccgtat tcgtcaataa catccattgg
     2581 atccacacca ttacctaatg atttactcat cttacgcccg tcttcagcac gaactaaacc
     2641 gtgtaataat acatcattaa atggacgacg atctgtaaat tctaagcctt ggaatatcat
     2701 gcgtgctacc cagaaaaaga taatatcgta acctgtaact aaggcatttg ttgggtagta
     2761 tcgtttaaag tcttcacttt ctaaatcagg ccaacctaac gtagagaaag gccataaagc
     2821 acttgagaac cacgtatcta atacatcttc atcttgttgc caattttcaa tatcagttgg
     2881 cgcttcttct ccaacatata tttcgcctgt ttctttatga taccaagccg gaatttgatg
     2941 accccaccat aattgtcttg aaatcgtcca atctctaata ttttccatcc attggttaaa
     3001 tgtatgttcg aaacgttgcg gataaaaatc aatacgatca tctgtttttt ggttatctaa
     3061 tgaacgtttc gctaagtctt ccatgcgcac aaaccattgt gttgataaat atggttcaac
     3121 aacagcgcca gatcgttctg aatgacctac agaatgaaca tgatcttcaa tcttgataac
     3181 taaatcttgt tcttttaaat ctttaactag ctgtttacga caatcaaaac ggtccatacc
     3241 ttcatattta cccgctttgt cgttcatttt accattttca tccataacga taatattttc
     3301 taattgatgt ctttgaccaa tttcaaaatc attagggtca tgtgctggtg tcactttcat
     3361 agcaccagaa ccgaagtcta tatcaacata ctcatctgct aaaataggca gttcgcgtcc
     3421 tacgattggt aatataacag ttttaccgat tacatctttg tatcgttcgt cattagggtt
     3481 aacaacaatc gctgtatcac ctaacatcgt ttctggtctt gttgttgcaa tttcaataaa
     3541 accttcacca tcagcgtaag gatatttaaa atgataaaac gcaccttgaa catcttcatg
     3601 tattacttca atatcagata aagctgtacg tgctttagga tcccaattta taatacgttc
     3661 gccacgataa ataattcctt tattgtataa atcaacaaaa acttttttaa ctgctttact
     3721 taaaccttca tctaaagtaa aacgttctct actataatct aaacctagac ctaatttagc
     3781 ccattgcgca cgaataaatg acgcatactc ttctttccaa tcccatgcct gttctaaaaa
     3841 cttttcacga ccaagatcat atctagttat tccttgttca tttaatttag cttctacctt
     3901 tgcctgtgtc gcaataccag catgatccat acctggtaag tataacgtat cgtatccttg
     3961 catacgtttc atacgtgtaa tgatatcttg taaagtcgta tcccatgcat gtcctaaatg
     4021 taatttacca gttacatttg gtggcgggat aacaattgta tatgtttctt ttgatttatc
     4081 ttctgacggt ttaaaataac cattctttac ccattcttca taacgtcccg cttcaacttc
     4141 acgaggatca tattttggtt tcatttccat ttgctatacc tcctaaaaaa ataaaaatat
     4201 ccatcctata tacaaatagg acggatattc cgtggtacca cctatattca agaaggatga
     4261 ttaatatcaa attcactctt ttaacataat tggaataatc ataccaatac tatcatcgtg
     4321 aaatttgaaa tgcttcatct cttcaagcac tctagattat gattaacgct caaacacgtc
     4381 ttagcctact attaatcacg ttcagctaag atactctgtg ggctaccttc agtaaaaatc
     4441 atttacatac tcacaccaaa tcatatgctc tctttaaaat aatttgaact tactcttccc
     4501 aaatcctata ttaaactctt aacttatagt ataatgattg acaaaataag tcaatgtata
     4561 ggtgggaata aaatgaatga atgcgcattt ggtactaaag atccagtcta cttagactat
     4621 catgatcatg tatggggaca accgctctat gatagcaagg cattgtttaa acttttagca
     4681 ttagaatcac aacatgctgg gctatcttgg ttaactattt taaaaaagaa agaagcctat
     4741 gaagaagcat tttatgattt cgaaccagaa aaggtagcac aaatgaccgc tcaagatatc
     4801 gaccgcttaa tgacttttcc aaatatcgtt catcatcgta aaaaattaga agcaattgtt
     4861 aatcaagctc aagggtattt aaaaattgaa caagcatatg gtagttttag taaattttta
     4921 tggtcatatg taaatggtaa gcctaaagat ttgcagtatg aacatgcttc tgatcgtatc
     4981 acagttgatg atactgcaac acaactatct aaagatttaa aacaatacgg gtttaaattt
     5041 ttaggtccag taacagtatt ttcgttttta gaagcagccg gtttatatga tgcacattta
     5101 caagattgtc catcaaagcc taaacataat taatttgcta tagcatcata aagtaaacga
     5161 gacatcatct atttttaact aatagactgt ctcgtttttt aatgtgaaaa tttattcaaa
     5221 tcataagtta aagttccaag ttaatgctct gctaatatta gatatcttaa tctaaaaata
     5281 gatgtacaac ctttgcttaa accttaataa tgaattctat cctaagcata attcaactta
     5341 gatggatgat agtttctaat cttcacgctt attcgaacga tattttaaaa agtaattaat
     5401 tcctggtgca ataataaata ggatgaaaaa gattcggaaa atatgataac tcgtaatcat
     5461 agcaacatcg gcaccagtag ctaatgcaac taaa
//
LOCUS       DAMQWL010000142         5422 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.146, whole genome shotgun sequence.
ACCESSION   DAMQWL010000142 DAMQWL010000000
VERSION     DAMQWL010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5422
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.146"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            280..573
                     /gene="csoR"
                     /locus_tag="PF788_002420"
     CDS             280..573
                     /gene="csoR"
                     /locus_tag="PF788_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-sensing transcriptional repressor CsoR"
                     /protein_id="HDG6304663.1"
                     /translation="MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDV
                     LTQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQEEAMEELLVTFQKLIKD"
     gene            585..794
                     /locus_tag="PF788_002421"
     CDS             585..794
                     /locus_tag="PF788_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDG6304664.1"
                     /translation="MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVNINIIDGQVT
                     VSYETPANLNSIEKEIYDEGYKIVF"
     gene            922..1059
                     /locus_tag="PF788_002422"
     CDS             922..1059
                     /locus_tag="PF788_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304665.1"
                     /translation="MKRPEKIQNVVKLLSSLGVNIKKTKSRLDIINTLPASNKVSHEL
                     K"
     gene            complement(1323..2525)
                     /locus_tag="PF788_002423"
     CDS             complement(1323..2525)
                     /locus_tag="PF788_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDG6304666.1"
                     /translation="MNYSSRQQPDKHWLRKVDWVLVATIAVLAIFSVLLINSAMGGGQ
                     YSANFGIRQIFYYILGAIFAGIIMFISPKKIKHYTYLLYFLICLLLIGLLVIPESPIT
                     PIINGAKSWYTFGPISIQPSEFMKIILILALARVVSRHNQFTFNKSFQSDLLLFFKII
                     GVSLVPSILILLQNDLGTTLVLAAIIAGVMLVSGITWRILAPIFITGIVGAMTVILGI
                     LYAPALIENLLGVQLYQMGRINSWLDPYTYSSGDGYHLTESLKAIGSGQLLGKGYNHG
                     EVYIPENHTDFIFSVIGEELGFIGSVILILIFLFLIFHLIRLAAKIEDQFNKIFIVGF
                     VTLLVFHILQNIGMTIQLLPITGIPLPFISYGGSALWSMMTGIGIVLSIYYHEPKRYV
                     DLYHPKSN"
     gene            2843..3913
                     /locus_tag="PF788_002424"
     CDS             2843..3913
                     /locus_tag="PF788_002424"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDG6304667.1"
                     /translation="MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYIT
                     NDGDWRKQNNITAEIKSTDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGED
                     GTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEH
                     NILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNA
                     REIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNM
                     ALEAFKATDCSGLVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELI
                     TKLIELAKERHQDKQKNKYKID"
     gene            3928..5286
                     /locus_tag="PF788_002425"
     CDS             3928..5286
                     /locus_tag="PF788_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDG6304668.1"
                     /translation="MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIP
                     FKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWVEDTLTALQQLAQAYLR
                     HVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEI
                     SILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDN
                     GTFIYDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTINNKEHYD
                     LPILGKHNMKNATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDA
                     YNASPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTF
                     GNEAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNAL
                     IS"
BASE COUNT         2054 a          738 c          982 g         1648 t
ORIGIN      
        1 ttccatgaaa ataatggtaa aggcgaataa taagtttaaa ataaatgcac caataaatat
       61 tgaatttaaa ataatattag aatgcttgag tgcaatggat aataactcta tcatttgaaa
      121 cctcccatcg aaaatcttaa acgagtagta tatcttatta attgtatcat gaagcaattt
      181 aaatatcatg acaatttagt ttgaaaaaca cactttgtgt tgacgttgtg ttttatggga
      241 tatagtatag taaggaatgt aaatgaagga gtgaatgcta tgactgaaca agataatgca
      301 catcattctg aacaaataaa aacgaatctt aaatcacgtt taaatcgaat tgaaggacaa
      361 gtgagagcga ttaatcgcat gattgaagaa gatgtctatt gtgatgatgt ccttacgcaa
      421 ataagagcga cacgttcggc gttaaacagt gttgcgataa agttattaga acaacatatg
      481 aaaagttgta ttatgaataa agttaatcaa ggtgctcagg aagaggcaat ggaagagtta
      541 ttagtgactt ttcaaaaatt gattaaagac taaaggagtt taagatgata catcaaaata
      601 cgatttacac agcgggaatt gaaacagaag aacaagtaag tcaattgaca gaacgcattt
      661 caaatatgat aggtgttcat caagtgaata ttaatataat agatggtcaa gtaactgtat
      721 cgtatgagac accagcaaat ttgaatagta ttgaaaaaga aatctatgat gaaggataca
      781 aaattgtatt ttagggtata atgtagagtg cgctatagat tttaattttg aaaataaatt
      841 aaaaattttg taaatgatgt agtaaaggta tgtcgaatag ggtaagataa tattgaaagc
      901 gatccaaacg aggtgataat aatgaaacgt cctgaaaaga ttcaaaatgt agtcaaacta
      961 ttgtcatcat taggtgtgaa tattaaaaaa actaaatctc gtttagacat tattaatact
     1021 ttgccagcat ctaataaagt aagtcacgaa ttaaaataat tgactgtgat tgtgaatcac
     1081 acaccgttaa agctatcgtc ggactattcg atgatagctt ttttgactgg atttactaaa
     1141 atgaaagcaa gtactatata acaaaatccc tctttagagt gtacatttta caatgtgtac
     1201 ttcaaagagg gattgttatt atcgagtaat atctatatat gacattttaa atcgacgacg
     1261 taaatagact atataacgtc atcttgaaaa gttatgatat ttgaaactca aaatagttta
     1321 aattaattac tttttggatg gtataaatcg acatatcgtt ttggttcatg ataataaatt
     1381 gataagacta tacctattcc agtcatcata ctccatagcg cactaccacc ataactaata
     1441 aatggtaatg gaataccagt gattggtaac aactgaattg tcataccaat attttgtaaa
     1501 atatggaaca caagtaaagt gacgaaacca acgataaaga ttttgttaaa ttgatcttca
     1561 attttcgcag ctaatcttat tagatggaag attaaaaata aaaatattaa gatcaatatg
     1621 acagaaccga taaagccaag ttcctctcca atcactgaaa agataaagtc agtatgattt
     1681 tcaggtatat aaacttcacc gtgattgtat cctttaccta gtaactgtcc agaaccgata
     1741 gctttaagtg attcagttaa atgatagcca tcaccactac tatatgtata ggggtcaagc
     1801 catgaattga ttcgtcccat ttgatacagt tggacaccta ataaattttc aattaatgcg
     1861 ggtgcatata gaatacctaa aatgactgtc attgcaccaa caatacctgt aataaagata
     1921 ggtgctaaga tacgccatgt tataccactt actaacatca cacctgcaat aatagcagct
     1981 aatactaatg tagttcctag gtcattttgc agtaatatta aaatacttgg tactaacgag
     2041 acaccaataa ttttgaaaaa taataacaaa tcactttgga atgatttatt gaatgtgaat
     2101 tgattatgtc tagaaacgac acgcgctaat gctaaaatta aaataatttt catgaattca
     2161 gatggctgaa tactgatagg gccaaacgtg taccaacttt tggcaccatt gataataggt
     2221 gtaataggtg actcaggaat aacgagcaag cctattaata atagacagat taagaaatac
     2281 aataaatatg tataatgttt aatcttttta ggtgaaataa acatgatgat acctgcaaaa
     2341 attgcaccta aaatgtaata aaaaatttgt ctgataccga aattagcact gtattgacca
     2401 ccgcccattg ccgagttaat aagcagaaca ctgaaaattg ctaaaacagc tatagtggct
     2461 actaataccc agtctacttt gcgaagccaa tgcttatccg gctgttgacg agatgaataa
     2521 ttcattgcaa actcctttta tactcactaa tgtttatatc aattttacat gactttttaa
     2581 aaattagcta gaatatcaca gtgatatcag ctatagattt caatttgaat taggaataaa
     2641 atagaaggga atattgttct gattataaat gaatcaacat agatacagac acataagtcc
     2701 tcgtttttaa aatgcaaaat agcattaaaa tgtgatacta ttaagattca aagatgcgaa
     2761 taaatcaatt aacaatagga ctaaatcaat attaatttat attaaggtag caaaccctga
     2821 tatatcattg gaggaaaacg aaatgacaaa agaaaatatt tgtatcgttt ttggagggaa
     2881 aagtgcagaa cacgaagtat cgattctgac agcacaaaat gtattaaatg caatagataa
     2941 agacaaatat catgttgata tcatttatat taccaatgat ggtgattgga gaaagcaaaa
     3001 taatattaca gctgaaatta aatctactga tgagcttcat ttagaaaatg gagaggcgct
     3061 tgagatttca cagctattga aagaaagtag ttcaggacaa ccatacgatg cagtattccc
     3121 attattacat ggtcctaatg gtgaagatgg cacgattcaa gggctttttg aagttttgga
     3181 tgtaccatat gtaggaaatg gtgtattgtc agctgcaagt tctatggaca aacttgtaat
     3241 gaaacaatta tttgaacatc gagggttacc acagttacct tatattagtt tcttacgttc
     3301 tgaatatgaa aaatatgaac ataacatttt aaaattagta aatgataaat taaattaccc
     3361 agtctttgtt aaacctgcta acttagggtc aagtgtaggt atcagtaaat gtaataatga
     3421 agcggaactt aaagaaggta ttaaagaagc attccaattt gaccgtaagc ttgttataga
     3481 acaaggcgtt aacgcacgtg aaattgaagt agcagtttta ggaaatgact atcctgaagc
     3541 gacatggcca ggtgaagtcg taaaagatgt cgcgttttac gattacaaat caaaatataa
     3601 agatggtaag gttcaattac aaattccagc tgacttagac gaagatgttc aattaacgct
     3661 tagaaatatg gcattagagg cattcaaagc gacagattgt tctggtttag tccgtgctga
     3721 tttctttgta acagaagaca accaaatata tattaatgaa acaaatgcaa tgcctggatt
     3781 tacggctttc agtatgtatc caaagttatg ggaaaatatg ggcttatctt atccagaatt
     3841 gattacaaaa cttatcgagc ttgctaaaga acgtcaccag gataaacaga aaaataaata
     3901 caaaattgac taactgaggt tgttattatg attaatgtta cattaaagca aattcaatca
     3961 tggattcctt gtgaaattga agatcaattt ttaaatcaag agataaatgg agtcacaatt
     4021 gattcacgag caatttctaa aaatatgtta tttataccat ttaaaggtga aaatgttgac
     4081 ggtcatcgct ttgtctctaa agcattacaa gatggtgctg gggctgcttt ttatcaaaga
     4141 gggacaccta tagatgaaaa tgtaagcggg cctattatat gggttgaaga cacattaacg
     4201 gcattacaac aattggcaca agcttacttg agacatgtaa accctaaagt aattgccgtc
     4261 acagggtcta atggtaaaac aacgactaaa gatatgattg aaagtgtatt gcataccgaa
     4321 tttaaagtta agaaaacgca aggtaattac aataatgaaa ttggtttacc tttaactatt
     4381 ttggaattag ataatgatac tgaaatatca atattggaga tggggatgtc aggtttccat
     4441 gaaattgaat ttctgtcaaa cctcgctcaa ccagatattg cagttataac taatattggt
     4501 gagtcacata tgcaagattt aggttcgcgc gaggggattg ctaaagctaa atctgaaatt
     4561 acaataggtc taaaagataa tggtacgttt atatatgatg gcgatgaacc attattgaaa
     4621 ccacatgtta aagaagttga aaatgcaaaa tgtattagta ttggtgttgc tactgataat
     4681 gcattagttt gttctgttga tgatagagat actacaggta tttcatttac gattaataat
     4741 aaagaacatt acgatctgcc aatattagga aagcataata tgaaaaatgc gacgattgcc
     4801 attgcggttg gtcatgaatt aggtttgata tataacacaa tctatcaaaa tttaaaaaat
     4861 gtcagcttaa ctggtatgcg tatggaacaa catacattag aaaatgatat tactgtgata
     4921 aatgatgcct ataatgcaag tcctacaagt atgagagcag ctattgatac actgagtact
     4981 ttgacagggc gtcgcattct aattttagga gatgttttag aattaggtga aaatagcaaa
     5041 gaaatgcata tcggtgtagg taattattta gaagaaaagc atatagatgt gttgtatacg
     5101 tttggtaatg aagcgaagta tatttatgat tcgggccagc aacatgtcga aaaagcacaa
     5161 cacttcaatt ctaaagacga tatgatagaa gttttaataa acgatttaaa agcgcatgac
     5221 cgtgtattag ttaaaggatc acgtggtatg aaattagaag aagtggtaaa tgctttaatt
     5281 tcatagagat tagtcgaggg accttttact tataaaaatg atttgaatta atactaaaag
     5341 attacaaaga agaggtggtt ttgtgtgtaa atacaaaatt gcctttttct ttttatgtta
     5401 aatctataaa tttgaaacta aa
//
LOCUS       DAMQWL010000143         5363 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.147, whole genome shotgun sequence.
ACCESSION   DAMQWL010000143 DAMQWL010000000
VERSION     DAMQWL010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5363
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.147"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            227..382
                     /locus_tag="PF788_002426"
     CDS             227..382
                     /locus_tag="PF788_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304669.1"
                     /translation="MMVKKLLKAIKQNFLYEQSNITFKMIVFGYKRLSKMLFQFEINH
                     INFLWEG"
     gene            390..911
                     /locus_tag="PF788_002427"
                     /pseudo
     CDS             390..911
                     /locus_tag="PF788_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499366.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1050..1580
                     /locus_tag="PF788_002428"
     CDS             1050..1580
                     /locus_tag="PF788_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDG6304670.1"
                     /translation="MQIRQIHQHDFAQVDQLIRTAFENSEHGYGNESELVDQIRLSDT
                     YDNTLELVAVLQNEVVGHGLLSEVYLDNEAQREIGLVLAPVSVDIHHQNKGIGKRLIQ
                     ALEREAILKGYNFISVLGWPTYYANLGYQRASMYDIYPPYDGIPDEAFLIKELKVNSL
                     AGKTGTINYTSAFEKI"
     gene            1843..4644
                     /gene="clfA"
                     /locus_tag="PF788_002429"
     CDS             1843..4644
                     /gene="clfA"
                     /locus_tag="PF788_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSCRAMM family adhesin clumping factor ClfA"
                     /protein_id="HDG6304671.1"
                     /translation="MNMKKKEKHAIRKKSIGVASVLVGTLIGFGLLSSKEADASENSV
                     TQSDSASNESKSNDSSSVSAAPKTDDTNVSDTKTSSNTNNGETSVAQNPAQQETTQSS
                     STNATTEETPVTGEATTTTTNQANTPATTQSSNTNAEELVNQTSNETTSNDTNTVSSV
                     NSPQNSTNAENVSTTQDTSTEATPSNNESAPQSTDASNKDVVNQAVNTSAPRMRAFSL
                     AAVAADAPAAGTDITNQLTNVTVGIDSGTTVYPHQAGYVKLNYGFSVPNSAVKGDTFK
                     ITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYTFTDYVNTKDDVKATLT
                     MPAYIDPENVKKTGNVTLATGIGSTTANKTVLVDYEKYGKFYNLSIKGTIDQIDKTNN
                     TYRQTIYVNPSGDNVIAPVLTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFV
                     NPENFEDVTNSVNITFPNPNQYKVEFNTPDDQITTPYIVVVNGHIDPNSKGDLALRST
                     LYGYNSNIIWRSMSWDNEVAFNNGSGSGDGIDKPVVPEQPDEPGEIEPIPEDSDSDPG
                     SDSGSDSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSD
                     NDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
                     SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
                     SDSDSDSDSDSDSDSDSDSDSDSDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
                     SDSDSDSDSESDSDSESDSESDSDSDSDSDSDSDSDSDSASDSDSGSDSDSSSDSDSE
                     SDSNSDSESGSNNNVVPPNSPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL
                     ASIGSLLLFRRKKENKDKK"
     gene            4865..5363
                     /locus_tag="PF788_002430"
                     /pseudo
     CDS             4865..5363
                     /locus_tag="PF788_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000791729.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="coagulase"
BASE COUNT         1986 a          782 c         1049 g         1546 t
ORIGIN      
        1 tttttaaaaa aacttgtaat atatcgaaag atttaaatgt aaaattttga tttgttaaga
       61 aattacgttt gtaaaaataa aaaaatcaac ttatttgtat gagataaata tgtattgaag
      121 aagacgtgtt attaatttgg aaaatactgg tcaaagatgg gagctcttaa aagcgttatt
      181 gtatttttta gtcaatacaa atagattgcc gtaataataa tcgtacttga tggttaaaaa
      241 attacttaag gctataaagc aaaacttttt atatgagcag tcgaatataa cgtttaaaat
      301 gattgttttt ggatataaac gattaagtaa aatgcttttt cagtttgaaa ttaatcatat
      361 aaatttctta tgggagggtt gatatcttaa tgattaacat tatttcagct ataggatcta
      421 ttggaacatt tattatggct ttattttatt ttgtatcagt ttcagttcaa ctttatcaaa
      481 tgaaaattag ctttctgcca gctttaggtt ttaaccaaat tttattagaa agggaggagg
      541 atcaacttaa tataatgaat tcggcaacag aagagcatca tcataaagat tatattaaac
      601 tatataattt aggtggcggt gctgctaaaa aaattgcaat agaggtttta ttggggaagg
      661 ataaagtcat tcagaaaaaa tacgtgcata ttttacctag taaagaaggg tacatgttac
      721 caattaataa aaatgtgtac gaagaattag aaagaacgat tgagaacaat ggtcatgaag
      781 ctgatttgaa tgtacgtatg acttattatc ataatgtaag tcgcaaacaa taggaagtta
      841 tattaaaagg tcaaatcgac cgttttaata cttataataa taaagaaatt tatgatttgc
      901 agtttatcta aaaattgatt taagagggta gttgtttatt gcgaaaaata tcattcaatt
      961 ttaatgaaat aatggcgtca ttactataaa atattacttt atgttgtaat gcatttttct
     1021 ataagataga actaaaagga ggggcaaaga tgcaaattag acaaatacat caacatgact
     1081 ttgctcaagt ggaccagtta attagaacgg catttgaaaa tagtgaacat ggttatggta
     1141 atgaatcaga gctagtagac caaattcgtc taagtgatac gtatgacaat accttagaat
     1201 tagtagctgt tcttcaaaat gaagttgtag ggcacggttt actaagtgaa gtttatcttg
     1261 ataacgaggc acaacgggaa attggattag tgttagcacc tgtatctgtt gatattcatc
     1321 atcaaaataa aggtattggg aagcgattga ttcaagcatt agaacgagaa gcaatattaa
     1381 aaggatataa ttttatcagt gtattaggat ggccgacgta ttatgccaat ctaggatatc
     1441 aacgcgcaag tatgtacgac atttatccac catatgatgg tataccagac gaagcgtttt
     1501 taattaaaga attaaaagtg aacagtttag cgggaaaaac aggtaccata aattacacat
     1561 ctgcttttga aaaaatatga tttcaagcta ggattacatt aggtagagtt catattaata
     1621 ataaaaaatg tttgcaatca aatcgtacgt tgtcgtttgt aattcttaaa atagcaataa
     1681 ataaaatgtt tgttagtaaa gtattattgt ggataataaa atatcgatac aaattaattg
     1741 ctataatgca attttagtgt ataattccat taacagagat taaatatatc tttaaagggt
     1801 atatagttaa tataaaatga ctttttaaaa agagggaata aaatgaatat gaagaaaaaa
     1861 gaaaaacacg caattcggaa aaaatcgatt ggcgtggctt cagtgcttgt aggtacgtta
     1921 atcggttttg gactactcag cagtaaagaa gcagatgcaa gtgaaaatag tgttacgcaa
     1981 tctgatagcg caagtaacga aagcaaaagt aatgattcaa gtagcgttag tgctgcacct
     2041 aaaacagacg acacaaacgt gagtgatact aaaacatcgt caaacactaa taatggcgaa
     2101 acgagtgtgg cgcaaaatcc agcacaacag gaaacgacac aatcatcatc aacaaatgca
     2161 actacggaag aaacgccggt aactggtgaa gctactacta cgacaacgaa tcaagctaat
     2221 acaccggcaa caactcaatc aagcaataca aatgcggagg aattagtgaa tcaaacaagt
     2281 aatgaaacga cttctaatga tactaataca gtatcatctg taaattcacc tcaaaattct
     2341 acaaatgcgg aaaatgtttc aacaacgcaa gatacttcaa ctgaagcaac accttcaaac
     2401 aatgaatcag ctccacagag tacagatgca agtaataaag atgtagttaa tcaagcggtt
     2461 aatacaagtg cgcctagaat gagagcattt agtttagcgg cagtagctgc agatgcaccg
     2521 gcagctggca cagatattac gaatcagttg acgaatgtga cagttggtat tgactctggt
     2581 acgactgtgt atccgcacca agcaggttat gtcaaactga attatggttt ttcagtgcct
     2641 aattctgctg ttaaaggtga cacattcaaa ataactgtac ctaaagaatt aaacttaaat
     2701 ggtgtaactt caactgctaa agtgccacca attatggctg gagatcaagt attggcaaat
     2761 ggtgtaatcg atagtgatgg taatgttatt tatacattta cagactatgt aaatactaaa
     2821 gatgatgtaa aagcaacttt gaccatgccc gcttatattg accctgaaaa tgttaaaaag
     2881 acaggtaatg tgacattggc tactggcata ggtagtacaa cagcaaacaa aacagtatta
     2941 gtagattatg aaaaatatgg taagttttat aacttatcta ttaaaggtac aattgaccaa
     3001 atcgataaaa caaataatac gtatcgtcag acaatttatg tcaatccaag tggagataac
     3061 gttattgcgc cggttttaac aggtaattta aaaccaaata cggatagtaa tgcattaata
     3121 gatcagcaaa atacaagtat taaagtatat aaagtagata atgcagctga tttatctgaa
     3181 agttactttg tgaatccaga aaactttgag gatgtcacta atagtgtgaa tattacattc
     3241 ccaaatccaa atcaatataa agtagagttt aatacgcctg atgatcaaat tacaacaccg
     3301 tatatagtag ttgttaatgg tcatattgat ccgaatagca aaggtgattt agctttacgt
     3361 tcaactttat atgggtataa ctcgaatata atttggcgct ctatgtcatg ggacaacgaa
     3421 gtagcattta ataacggatc aggttctggt gacggtatcg ataaaccagt tgttcctgaa
     3481 caacctgatg agcctggtga aattgaacca attccagagg attcagattc tgacccaggt
     3541 tcagattctg gcagcgattc taattcagat agcggttcag attcgggtag tgattctaca
     3601 tcagatagtg gttcagattc agcgagtgat tcagattcag caagtgattc agactcagcg
     3661 agtgattcag attcagcaag cgattccgac tcagcgagcg attccgactc agacaatgac
     3721 tcggattcag atagcgattc tgactcagac agtgactcag attccgacag tgactcagat
     3781 tcagatagcg attctgactc agacagtgac tcagattcag atagcgattc agattcagat
     3841 agcgattcag attccgacag tgattccgac tcagacagcg attctgactc cgacagtgat
     3901 tccgactcag acagcgattc agattccgac agtgattccg actcagatag cgattccgac
     3961 tcagatagcg actcagattc agacagcgat tcagattcag acagcgattc agattcagat
     4021 agcgattcag attccgacag tgactcagat tccgacagtg actcggattc agatagcgat
     4081 tcagattccg acagtgactc agattccgac agtgactcag actcagacag tgattcggat
     4141 tcagcgagtg attcggattc agatagtgat tccgactccg acagtgactc ggattcagat
     4201 agcgactcag actcggatag cgactcggat tcagatagcg attcggactc agatagcgat
     4261 tcagaatcag acagcgattc agaatcagac agcgaatcag attcagacag cgactcagac
     4321 agtgactcag attcagatag tgactcggat tcagcgagtg attcagactc aggtagtgac
     4381 tccgattcat caagtgattc cgactcagaa agtgattcaa atagcgattc cgagtcaggt
     4441 tctaacaata atgtagttcc gcctaattca cctaaaaatg gtactaatgc ttctaataaa
     4501 aatgaggcta aagatagtaa agaaccatta ccagatacag gttctgaaga tgaagcaaat
     4561 acgtcactaa tttggggatt attagcatca ataggttcat tactactttt cagaagaaaa
     4621 aaagaaaata aagataagaa ataagtaata atgatattaa attaatcata tgattcatga
     4681 agaagccacc ttaaaaggtg gcttttttac ttggattttc caaatatatt gtttgaatat
     4741 aattaataat taattcatca acagttaatt attttaaaaa ggtagatgtt atataatttg
     4801 gcttggcgaa aaaatagggt gtaaggtagg ttgttaatta gggaaaatta aggagaaaat
     4861 acagttgaaa aataaattgc tagttttatc attgggagca ttatgtgtat cacaaatttg
     4921 ggaaagtaat cgtgcgagtg cagtggtttc tggggagaag aatccatatg tatctgagtc
     4981 gttgaaactg actaataata aaaataaatc tagaacagta gaagagtata agaaaagctt
     5041 ggatgattta atatggtcct ttccaaactt agataatgaa agatttgata atcctgaata
     5101 taaagaagct atgaaaaaat atcaacagag atttatggct gaagatgagg ctttgaagaa
     5161 attttttagt gaagagaaaa aataaaaaat ggaaatactg ataatttaga ttatctagga
     5221 ttatctcatg aaagatatga aagtgtattt aatactttga aaaaacaaag tgaggagttc
     5281 ttaaaagaaa ttgaagatat aaaaaaagat aaccctgaat tgaaagactt taatgaagag
     5341 gagcaattaa agtgcgactt aga
//
LOCUS       DAMQWL010000144         5361 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.148, whole genome shotgun sequence.
ACCESSION   DAMQWL010000144 DAMQWL010000000
VERSION     DAMQWL010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5361
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.148"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..1029)
                     /locus_tag="PF788_002431"
     CDS             complement(<1..1029)
                     /locus_tag="PF788_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000776424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDG6304672.1"
                     /translation="MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSF
                     QFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIGYSDTIVMQVYLAERFGNIIDVL
                     EETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
                     SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQ
                     LFKTYFVTNELVLFYKNGITLQSIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQIL
                     EKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIKQTQFLQPILFLILG
                     LFIVAIYLV"
     gene            complement(1001..1975)
                     /locus_tag="PF788_002432"
     CDS             complement(1001..1975)
                     /locus_tag="PF788_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HDG6304673.1"
                     /translation="MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQ
                     IGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYLFNKIYFLRISTLPLSLGQESCVI
                     RIVPQFFQPQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
                     VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVI
                     QASLSGHLVLTTLHATDCKGAILRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLV
                     CEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTMHKYI"
     gene            complement(2027..2650)
                     /locus_tag="PF788_002433"
     CDS             complement(2027..2650)
                     /locus_tag="PF788_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDG6304674.1"
                     /translation="MRISSLTLGLVDTNTYFIENDKAVILIDPSGESEKIIKKLNQIN
                     KPLKAILLTHAHFDHIGAVDDIVDRFDVPVYMHEAEFDFLKDPVKNGADKFKQYGLPI
                     ITSKVTPEKLNEGSTEIEGFKFNVLHTPGHSPGSLTYVFDEFAVVGDTLFNNGIGRTD
                     LYKGDYETLVDSIQDKIFELEGDLPLFPGHGPYTTVDDEQLNPFLHG"
     gene            complement(2647..2976)
                     /locus_tag="PF788_002434"
     CDS             complement(2647..2976)
                     /locus_tag="PF788_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTH1187 family thiamine-binding protein"
                     /protein_id="HDG6304675.1"
                     /translation="MAIVDVVVIPVGTEGPSVSKYIADIQKKLQEYKAMGKIDFQLTP
                     MNTLIEGELSDVLEVVQVIHELPFDKGLSRVCTNIRIDDRRDKSRKMNDKLTSVQKHL
                     ENSGENL"
     gene            complement(2976..3962)
                     /locus_tag="PF788_002435"
     CDS             complement(2976..3962)
                     /locus_tag="PF788_002435"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HDG6304676.1"
                     /translation="MTKIILAADVGGTTCKLGIFTPELEQLHKWSIHTDTSDSTGYTL
                     LKGIYDSFVEKVNENNYNFSNVLGVGIGVPGPVDFEKGTVNGAVNLYWPEKVNVREIF
                     EQFVDCPVYVDNDANIAALGEKHKGAGEGADDVVAITLGTGLGGGIISNGEIVHGHNG
                     SGAEIGHFRADFDQRFKCNCGRSGCIETVASATGVVNLVNFYYPKLTFRSSILELIKE
                     NKVTAKAVFDAAKAGDQFCIFITEKVANYIGYLCSIISVTSNPKYIVLGGGMSTAGPI
                     LIENIKTEYHNLTFAPAQFETEIVQAKLGNDAGITGAAGLIKTYVLDKEGVK"
     gene            complement(3959..4162)
                     /locus_tag="PF788_002436"
     CDS             complement(3959..4162)
                     /locus_tag="PF788_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgQ family protein"
                     /protein_id="HDG6304677.1"
                     /translation="MSRKINNFYDVQQLLKSYGFLIYFKNPEDMYEMIQQEISSLYQY
                     ELLSKEEYLKCTLIINQRRNEQK"
     gene            complement(4143..>5361)
                     /locus_tag="PF788_002437"
     CDS             complement(4143..>5361)
                     /locus_tag="PF788_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001652331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HDG6304678.1"
                     /translation="YYFTESEFSEEQLNEVSPIRIKFNVIRHTKDLIKHMPNIFLARL
                     ISEDNDKKTYMFYKRKVLTDNFLDKYMQKFSPATYTIIFVNVLIWLCMILYLNNFSDV
                     KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRML
                     TVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA
                     LVILVGVSLFMSNINIVAHIGGFIGGLLITLIGYYYKVNRNIFWILLIGMLVIFIALQ
                     IRIFTIKEDNIYNKLIKDDMTSGNYDNAQNIVKQTINKNYADDQTYYLSGMIMATINS
                     KSEGMTEWERGLRMFPKSGLLNFELAIANRSLNDDEKALKYVRKALNADPKNTDYINL
                     EKELTKSNESKNK"
BASE COUNT         1803 a          944 c          683 g         1931 t
ORIGIN      
        1 tactaaataa attgcgacaa taaataaacc taaaatcaaa aataaaatag gctgtaaaaa
       61 ctgagtctgt tttatcgctt tatcttctat ttgttttact aatatttgcg aatataactt
      121 tagttctact tctagcttcc ctctcttttc accttgtagc acaaacttaa ttaattgagg
      181 cttaaagcat tttagttttt ctaaaatttg aggcaaacca tatcccattt ctgaataagt
      241 taataagtat ttacctagaa actgtctaaa tggatcacta ctatggttaa tataaacgtc
      301 tactattgat tgaagtgtaa taccattttt ataaaacaac actaattcat tagttacaaa
      361 ataagtttta aataattgga aatagcctga tattagcggt agtttcatca caaagtttat
      421 cttattgagc atatttaaat tgttataaat taatttcata ataatagcca acatagatac
      481 tattatgagc attactacaa ttatagtagg taagctggta atgaaaaaag acaatgtttt
      541 ttgaaaagaa gatagttgaa tattcataga agtatataat tgttgaaact gtggaattac
      601 tgtgaggttt aatataataa tcatagcaat aaagatagaa actagtatta aggggtattg
      661 cagtgtcttt aacaatcgtt gttctgactt tctattcact ttcatataat ttacggtttc
      721 ttctagaacg tctataatat tgccaaatct ttctgccaaa tatacttgca tgacgatagt
      781 atcgctataa cctatcagtg ataatatttg attgcatggt gcaccatttg aaatttcact
      841 tagaatggtg gtacctaatt gcttattttt atatgtcatt tgaagattta aaaattgaaa
      901 actttgatac agagtgaaac catatttcaa caaattacat aaatttgaaa gtaagtcgat
      961 ttgttgggcc ttacttaatt gtcgcttctt agaatgtagt ttaaatgtat ttatgcattg
     1021 tagtttcaca aatgacacct gcttttgtca tatcatcaag tttatcttct aagttcttaa
     1081 atgatgatgg taatgaatga ttatgggaaa agaaatatcg gagttgttgc tgagatagaa
     1141 tttcacatac taattgtcgc tgttgcttaa tagtagttac aagtcgttgg tttataatta
     1201 agttagttgc ctgtatcaat tcttgtacag aaatgcccat ttctaatagc cttaaaatag
     1261 cacctttaca atcagttgca tgcaatgtag tcagaacaag gtgaccactt aaactagcct
     1321 gtataacaca cttggcaaca tctttatctc tgatttcacc tattaaaata acatcaggat
     1381 cacatcttaa aatagcttta aacgaattta catagtttat gccagcttta tcattcacat
     1441 taatttggac gataccagga atttgcatct ctacaggatc ctctatagaa attacattta
     1501 aattcaaggc tttattcgcg tatgagacca tttgatacat taatgtactc tttcctgaac
     1561 cagttggtcc actaaacaat agtaatcctt gtttcttatt catgaggtgt ttaaaatcat
     1621 tgaatttata agttgatttc tgtggttgaa aaaattgagg tacaattctg ataacacaac
     1681 tttcttggcc aagtgacaat ggtaaagttg atattctcaa aaaatatatt ttattgaaaa
     1741 ggtaactata tcgaccgctc tgtgcgactt gctgtgtaga aacatcaagc ccagcttgaa
     1801 acttcatata aactaataac ttttgataaa tgctattccc aatttgttca tactgctcca
     1861 agttatcatt aattctaaat ttaatactta cttcattttt aactggaata aaatgtacat
     1921 cactcgcttt catttctatc gctttattaa ttatttcttg aaatagaatc ttcaaaaaaa
     1981 cacctcctac atataatcac gtaggaggtg tttttattac ttcaatttaa ccgtgtaaaa
     2041 atggatttaa ttgttcatca tcaaccgtcg tatatggacc atgtccaggg aataaaggta
     2101 aatcgccttc taattcaaat attttatctt gaatagaatc aactagcgtt tcataatcac
     2161 ctttatataa atctgtacgt ccgattccat tattaaataa tgtatctcca acaactgcga
     2221 attcatcgaa cacatatgtt aaacttcctg gtgaatgtcc aggtgtgtgt aacacattaa
     2281 acttaaatcc ttctatttct gtgctacctt cgtttaactt ttcaggagtt accttacttg
     2341 taataattgg taatccatat tgcttaaatt tatctgcccc atttttaacg ggatctttta
     2401 gaaaatcaaa ctctgcttca tgcatataaa ccgggacatc gaatcgatca actatatcat
     2461 cgactgctcc gatatgatca aagtgtgcat gtgttaataa aatagctttt aacggtttat
     2521 ttatttggtt taatttttta ataatttttt cactttcacc tgaagggtca atcagaataa
     2581 cagctttgtc attttcgatg aaatacgtat tagtatcaac taagcctaaa gttaagcttg
     2641 aaatcctcat aggttttcac cactattttc taaatgtttt tgtactgatg ttagtttatc
     2701 attcattttt ctagatttgt ctcgtcggtc atcaatacgg atatttgtac aaactctact
     2761 taaaccttta tcaaaaggta attcatgtat cacttgcaca acttctaata catcgcttaa
     2821 ttcaccttca attagagtat tcattggtgt taattgaaaa tcaattttac ccattgcttt
     2881 atattcttga agttttttct gaatatctgc aatatattta ctaacactcg gaccttccgt
     2941 tccaactgga ataacaacca catcaacaat agccattatt ttaccccctc tttatctaat
     3001 acataggtct tgattaatcc tgctgctcct gtaatacctg catcattacc taatttcgct
     3061 tgtacaattt cagtttcaaa ttgagcaggt gcaaatgtta aattatgata ttctgtttta
     3121 atattttcaa ttaaaatagg tcctgcagta gacattcctc cacctagaac gatatatttc
     3181 ggattacttg taacactaat aatactacat aaatatccaa tatagtttgc aaccttttca
     3241 gtaatgaaaa tacagaattg gtcaccagct tttgccgcat caaaaacagc ttttgctgta
     3301 accttatttt ctttaatcaa ttctaatata gaagatctaa acgtcaactt cggatagtag
     3361 aagttaacta agttaacaac gcctgtcgct gaagcaactg tttcaataca tccagaacga
     3421 ccacaattac atttaaatcg ttgatcgaag tctgctctaa aatgacctat ttctgcgcca
     3481 gagccattat gaccatgtac gatttcacca tttgaaataa ttcctccacc tagacctgta
     3541 ccaagtgtga tggcaacaac atcatcggca ccttcaccag cacctttgtg tttctcccct
     3601 aaagcagcta tgttagcatc attatctaca tacactggac aatcaacgaa ttgttcaaaa
     3661 atctcacgta cattaacttt ttctggccaa tataagttta ctgctccatt tactgtacct
     3721 ttttcaaagt caacaggacc tggtacacca atacctacgc caagtacatt tgaaaaatta
     3781 taattatttt catttacttt ttcaacaaac gaatcataaa ttcctttcaa aagtgtatat
     3841 cctgtactat cagatgtatc agtgtgaata gaccatttat gtaattgttc taattcaggt
     3901 gtgaaaatac ctaatttaca agtcgtcccg cctacatcag ctgctaaaat aatttttgtc
     3961 atttctgttc attccttctc tgattaatta tcaacgtaca tttcaaatat tcttccttag
     4021 ataacagttc atattgatac aatgatgaaa tctcctgttg aatcatttcg tacatatctt
     4081 ctggattttt aaaatatatt agaaatccgt aacttttcaa taactgttgt acatcataaa
     4141 agttatttat ttttcgactc atttgattta gtcaactctt tttctaagtt aatataatct
     4201 gtatttttag ggtctgcatt taatgcttta cgcacatatt ttaatgcttt ttcatcatca
     4261 tttaatgaac gatttgctat cgctaactca aaatttaata aacctgattt aggaaacatt
     4321 ctaagtcctc gctcccattc tgtcatacct tcggacttag aattgatagt agccataatc
     4381 ataccactta aataatatgt ttgatcatcg gcataatttt tatttattgt ctgcttcaca
     4441 atattttgag cattatcata attaccacta gtcatatcat ctttgatcaa tttattataa
     4501 atattatctt ctttaattgt aaaaattcta atttgaagtg caataaatat aacaagcata
     4561 ccaattagta aaatccaaaa aatattacga ttcactttat agtaatagcc aattaaagtt
     4621 attaataaac caccaatgaa tcctccaata tgcgccacaa tatttatatt tgacataaac
     4681 agagaaacac caactaatat cactaatgca attaataact gtcctaacat ttttttgtta
     4741 aatgtttttg aaacatacat catcgcaaaa attgatccaa tcagaccaaa tatagcacca
     4801 ctagccccaa ctgaaattgt agtcgtatta aatgatagtg atacaaagtt tccaaacaac
     4861 cctgcaataa agtatacagt taacatccgc catgaaccaa taattgcttc gactatttta
     4921 ccaaaaataa ataatgaaag catattcata agtatatgtt caaaactaaa atgtaaaaac
     4981 atcgatgtaa caattcgata ccattcacca tgtacgacat taaaatgcac taacccgcca
     5041 acatctaata attttacatc cgaaaaatta tttaaatata aaatcataca taaccatatt
     5101 aagacattta caaatattat tgtgtatgtt gccggtgaaa atttctgcat atatttatct
     5161 aaaaagttat cggttaatac tttgcgttta tagaacatat atgtcttttt atcattatct
     5221 tctgaaataa gtctagccaa aaatatattc ggcatatgct ttatcaaatc ttttgtgtgt
     5281 cttataacat tgaatttaat tctaattggc gaaacttcat ttaattgttc ttctgaaaat
     5341 tccgattctg taaaataata a
//
LOCUS       DAMQWL010000145         5317 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.149, whole genome shotgun sequence.
ACCESSION   DAMQWL010000145 DAMQWL010000000
VERSION     DAMQWL010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5317
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.149"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            52..417
                     /locus_tag="PF788_002438"
     CDS             52..417
                     /locus_tag="PF788_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3139 domain-containing protein"
                     /protein_id="HDG6304679.1"
                     /translation="MKKKKNAIKVIIILFISLIVAVAFFFGLKTYQGHKNIQLIDSYL
                     EEKNLKDKIKSEKTEYSAKKGLFYKEVTFKDEPGVTYVVQPISTNKGLFVEGFDTETK
                     KSLKTAKHKYFNQNYKPSK"
     gene            599..1876
                     /locus_tag="PF788_002439"
     CDS             599..1876
                     /locus_tag="PF788_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDG6304680.1"
                     /translation="MALFKRKISLPMQVVIALVLGVVVGLLLYGQENVANYIKPFGDV
                     FLNLIKMIVIPVVFCSLALSISNVGESKTVGRYGWKTILYFEIITTIAIGLGIIFGNL
                     FKPGAGLDPTKLPKGDISKYQSTAHAAEQSTYGNHFIDTIVHIIPTNFFEALNKGELL
                     PIIFFAVFFGLGLAAVGKKAEPVKEFLSGSLEAVFWMINKILKLAPLGVFAFICTTII
                     TFGASALLPLLKLVLVVVFAMVFFVFAILGLVAWMCGINIMNIIRILKSELLLAFSTS
                     SSEAVLPVMMKKMENFGSPKEITSFVIPIGYTFNLDGSALYQSIAALFVAQMYGMHLT
                     LSEQIVLMLTLMITSKGMAAVPGTSIVVLLTTLGAMGLPAQGLALIIGVDRILDMVRT
                     CVNVIGNALSTIVIAKWENVYDKAKGQEYLKSI"
     gene            complement(2280..2636)
                     /locus_tag="PF788_002440"
     CDS             complement(2280..2636)
                     /locus_tag="PF788_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4889 domain-containing protein"
                     /protein_id="HDG6304681.1"
                     /translation="MKKKKGFGLGISLIAIMLIVCIVLVIMMMTGGKKDTYYGIMKDN
                     TTIEKMISEKDESIEKNVKLPSDSDVKVKKGDFVIVYKLADSDKIVKVKKVDHDDVPH
                     GLMMKIHDMGKMHMKH"
     gene            complement(2901..3323)
                     /locus_tag="PF788_002441"
     CDS             complement(2901..3323)
                     /locus_tag="PF788_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDG6304682.1"
                     /translation="MSNSQAIQAIENVLATSKVGVLSTAYNNKPNSRYMVFYNDGLTL
                     YTKTNIHSAKVKEIKDNPAAYVLLGYNDTTNRSFVEMEATIEIVTEQEVIDWLWETQD
                     KSFFSSKEDPELCVLRVVPQSIKLMNDKSLDTPIKIDL"
     gene            complement(3394..>5317)
                     /gene="rsp"
                     /locus_tag="PF788_002442"
     CDS             complement(3394..>5317)
                     /gene="rsp"
                     /locus_tag="PF788_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AraC family transcriptional regulator Rsp"
                     /protein_id="HDG6304683.1"
                     /translation="ENIIELMIPVFYFYQQDDDFFNGYLDRHLLQSSNYIKSLIADLI
                     STPTSSSLMGKNIGQSIIDTLLKEAFIRIDHEYLPNIALSNPVFIDCVNYIHDNIDAH
                     LSLKDIAMHCNISESYCSNLFVRYLSMNFKDYFTSIKLVNAINLLLSTKHSITTVSEL
                     AGFNSHTNFANQFKNYLHFSPKQFRSLVSKITEPPQIHFQQDNVSQFTELISTIDLTA
                     QLATNTTDIHIDDFNPKDRSQRAKVFVRFSNFNELFQFIFNEYYDINFEHLPKPVVFI
                     DDIHDIEISQTNYNLLNRCFEKLFEKNIGLAIAIKSTQQFETMKQLILTFLQGNQDYK
                     TSKKLVKFMLVFCSNSMTAEEIHLCHLKIKNKNKEIKYSVTVDGFLETYSTVEQVYDV
                     MQRLKFHYYFIDIENSKTATHLITKNQHYHQTDTHFEQYKKFILDSGISSTQFVYNNL
                     SVSGFKYTNDGKNPIQLSDIVYHLIALLRYGGGISYQLLDDHSNYISLYNKYGSPLPL
                     MHLYKMFRPFVNEDIEITNNYVLSRKDNNYHFLLFNKINDRYMSDVKQDFIFHNELPQ
                     DSLMIIKTLNHEHGSIQHLLPISDQLVYIEKEILDELDKTNYPKTELAVQEETGRTFE
                     LKLNHDEVKYICFKPS"
BASE COUNT         1795 a          762 c          867 g         1893 t
ORIGIN      
        1 aaataaattg attcgttcat actgaataga taagcaaaaa ggagttacat aatgaagaag
       61 aaaaaaaacg cgattaaagt tatcattata ttatttattt cattaattgt tgcagtagca
      121 tttttctttg gtctgaaaac atatcaaggc cataagaata ttcaactaat tgacagttac
      181 ttggaagaga aaaatctaaa agataaaatt aaatcagaaa aaacagagta tagtgctaaa
      241 aaaggtctct tctataagga agttacattt aaagatgaac ctggtgtaac ttatgttgtg
      301 caaccaatca gtactaataa aggattattt gttgaaggct ttgatacaga gactaagaaa
      361 agtttgaaaa ctgcaaagca taaatatttc aatcaaaatt ataaaccatc aaaatagtga
      421 aacgttaaac tggtgaagca gtttagtgcc ttcaatttta attatttgag gtaaacagtt
      481 tttgtatgga aattagtgat ttttgacatc tataaaagat aaatatttta attttttata
      541 gataattatc aattttctga tataattgag tgatgtcaga tgaaggggag tttgtactat
      601 ggctctattc aagagaaaaa ttagcctacc tatgcaagtt gttattgcat tagtgttagg
      661 tgttgtcgta ggacttttat tatatggaca agaaaacgta gcaaattaca ttaaaccatt
      721 tggtgacgta tttttaaatt taattaaaat gatcgttata ccagttgtat tttgctcact
      781 agcgctttct atttcgaacg ttggggaatc gaaaactgta gggcgttatg gctggaaaac
      841 aattttatac tttgaaatta ttacaacaat cgcaataggt ttagggatta tcttcggtaa
      901 cctatttaaa ccaggtgctg gattagaccc aacaaaatta cctaaaggtg atatttctaa
      961 atatcaatca actgcacatg cagcagaaca atctacatat ggaaatcatt ttattgatac
     1021 cattgtacat attattccga caaacttttt tgaagcttta aataagggtg aattattacc
     1081 tattatcttc ttcgcagtat tctttggatt aggattagct gctgtaggta aaaaagcaga
     1141 accagttaaa gaatttttaa gcggatcgct tgaagctgtg ttctggatga ttaataaaat
     1201 tttaaaatta gcaccacttg gagtgtttgc attcatttgt actacaatta ttacatttgg
     1261 tgcatccgca ttattaccac tattaaaatt agtattagtt gttgtctttg caatggtgtt
     1321 ctttgtattc gctatactag gactagttgc atggatgtgt ggtattaata tcatgaatat
     1381 tattagaatc ttgaaaagtg aattgctttt agcattttct acatcaagtt cggaagctgt
     1441 acttcctgta atgatgaaga aaatggaaaa cttcggttct ccaaaagaaa ttacttcttt
     1501 tgttatacca attggttata cgtttaactt agatggatca gcactttatc aatctattgc
     1561 agcattattc gttgcacaga tgtatggaat gcacttaaca ttatcagagc aaattgtgtt
     1621 gatgttaaca ttaatgatta cgtctaaagg tatggcggca gtaccaggaa cttcaatcgt
     1681 tgttttatta acaacattag gtgccatggg cttaccggca caaggtttag cattaattat
     1741 tggtgttgac cgtatcttag atatggtacg tacatgtgta aacgttattg gtaatgcatt
     1801 atcaacaatc gttatagcta aatgggaaaa cgtatatgac aaagcaaaag gtcaagaata
     1861 tttaaaatca atttaaaaaa tactatctga catttaaagc cccttacaac ctttggttgt
     1921 taggggcttt tatgcatgcg ctaaagcgca ggcgaacgga agcgtagtga cctcaggttg
     1981 ttagggactt ttatgcatgc gctaaagcgc aggcgaaccg aagcgtagtg acctcaggtt
     2041 gttaggggct tttatgcatg cgctaaagcg caggcgaacc ggagcgcagt gacctcaggt
     2101 tgttaggggc ttttatgcat gcgcaaagcg caggcgaacg gcaagtggag ctattcaata
     2161 tgaaagtatt tcaaatataa aaagcagcag taaaatgatt ccaaattgga aatcaactta
     2221 ccgctgcttt tactcgtata taccttgatg gcaactaaaa tttgtaattt aaattacaat
     2281 tagtgtttca tgtgcatttt gcccatgtca tgaattttca tcattaaacc atgtggtaca
     2341 tcgtcatggt caactttttt aactttaaca attttatctg aatctgctaa tttataaaca
     2401 attacaaaat cacctttttt aactttaaca tctgaatctg aaggtaattt aacatttttt
     2461 tcaatacttt catctttttc actaatcatt ttttcaatag tagtattatc tttcataatt
     2521 ccatagtatg tatctttctt tccgccagtc atcatcatga ttactaatac aatacataca
     2581 attaacatga tggcgattaa actaatacca agaccaaaac cttttttctt tttcatggtt
     2641 catcaatctc cttaaatgta gttaattctg ttatacctaa aagtgcaaca gtttgcaaat
     2701 gcagtattta tattacataa aattaattta aaaagacaca ccctaatcac gttaaatgtg
     2761 aataaagtgt gtctaaaaaa caatacattg caaattgaat tgtaaacata ttaaacactt
     2821 taattatagc gagttatttt aagtatttaa cattgttata tctagaattc ataaaagtta
     2881 tttcctatat acactttgtg ttataaatcg attttgatag gtgtatctaa tgatttatca
     2941 ttcattagct taatggattg cggaactact cttaaaacac ataactctgg atcttctttt
     3001 gaactgaaaa agcttttgtc ttgtgtttcc catagccaat caatcacttc ttgttctgta
     3061 acgatttcga ttgtcgcttc catctcaacg aaactacgat tagttgtgtc gttatagcct
     3121 aacaaaacat atgctgctgg attatcttta atttctttga ccttagcaga atggatattc
     3181 gttttagtat ataaagtaag accatcatta taaaagacca tatatctact attaggttta
     3241 ttattatatg cagttgataa tacaccaact tttgacgttg ctaacacgtt ttcaattgct
     3301 tgaattgctt gtgagttact cattacaaat catctcctta tgatataaat agcctttaac
     3361 gtaagaaact aaacacaaga ggactgttag tatttagctt ggtttaaagc aaatatattt
     3421 aacctcgtcg tgatttaact tgagttcaaa tgtacgacca gtttcttctt gaactgcaag
     3481 ctccgtttta gggtaattcg ttttgtctaa ttcatctaaa atttcttttt ctatataaac
     3541 aagttgatcg cttattggaa gcaaatgttg aattgaacca tgttcatgat tcaatgtttt
     3601 aataatcatc aaagagtctt gaggtaattc attatggaaa atgaaatctt gttttacgtc
     3661 tgacatatat cgatcattaa ttttattgaa taataagaaa tggtagttat tatctttacg
     3721 actcaataca taattatttg taatttcaat atcttcatta acaaaaggtc taaacatttt
     3781 atataaatgc attaatggta gggggctacc atatttgttg tacaaggaaa tataatttga
     3841 atggtcatct aataattgat agctaatgcc accgccatat cgtaataatg cgattaagtg
     3901 atacactatg tcagataatt gaattggatt cttaccatca ttagtatatt taaatccgct
     3961 tacagacagg ttattatata caaattgtgt tgatgatata cctgaatcta aaataaattt
     4021 cttatactgt tcaaaatgag tgtcagtttg atgatagtgt tggtttttag tgataagatg
     4081 tgttgcagtt tttgaatttt caatatcaat aaagtaataa tggaatttaa gacgctgcat
     4141 gacatcataa acttgttcca cggttgaata agtttctaaa aagccatcga ctgtcacact
     4201 atatttaatt tctttatttt tgtttttaat tttaagatga cataaatgaa tttcttctgc
     4261 tgtcatagaa ttagagcaaa atacgagcat aaatttaact aatttcttgc ttgtcttata
     4321 gtcttgattg ccttgtaaaa atgttagtat taattgcttc atcgtttcga attgttgtgt
     4381 tgatttaata gcgattgcta aacctatatt tttttcgaaa agcttttcaa aacatctatt
     4441 taacaggttg taattcgttt ggctaatctc aatatcgtga atatcgtcaa tgaaaacgac
     4501 aggttttggt aagtgctcaa agttaatatc gtaatattca ttgaaaataa attgaaatag
     4561 ttcattgaaa ttactaaatc gaacaaatac tttggcacgc tgacttcgat ctttcggatt
     4621 aaaatcatct atatgaatat ctgttgtatt tgtagccagt tgagctgtta aatcaattgt
     4681 tgaaattaac tcagtgaatt gtgatacgtt atcttgttgg aagtgtattt gtggtggttc
     4741 agtaatcttg gaaacgagtg aacggaactg tttaggacta aaatgcaagt aattcttaaa
     4801 ttgatttgca aaatttgtat gactgttaaa accggccaat tcagaaacag ttgtaataga
     4861 atgttttgta gaaagtaata aattgatggc gttaacaagt ttaatacttg taaaataatc
     4921 tttaaaattc atactcaaat atcgaacaaa aagattagaa caatatgatt cagagatgtt
     4981 gcaatgcatc gctatatctt ttaaagacaa gtgcgcatca atattgtcat gaatatagtt
     5041 tacacagtct atgaacaccg gattgcttaa agcaatattt ggtaaatatt catgatctat
     5101 tcttataaaa gcttctttaa gtaaagtgtc tataatactt tgacctatat ttttccccat
     5161 taaagaagaa cttgttggtg tactgattaa atcggcaatt aatgacttaa tataattact
     5221 tgattgtaat aaatgacgat ctaaataacc attaaagaaa tcatcatctt gttgataaaa
     5281 ataaaaaacg ggtatcatta attcgattat attttcg
//
LOCUS       DAMQWL010000146         5146 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.150, whole genome shotgun sequence.
ACCESSION   DAMQWL010000146 DAMQWL010000000
VERSION     DAMQWL010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5146
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.150"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..90
                     /locus_tag="PF788_002443"
     CDS             <1..90
                     /locus_tag="PF788_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C assembly protein"
                     /protein_id="HDG6304684.1"
                     /translation="LNSRYLIYYNIILFCLNMINLFFATHFVN"
     gene            132..1058
                     /gene="hemC"
                     /locus_tag="PF788_002444"
     CDS             132..1058
                     /gene="hemC"
                     /locus_tag="PF788_002444"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDG6304685.1"
                     /translation="MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGD
                     RIVDKQLSKVGGKGLFVKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELP
                     FDAYISKTHTPLSQLPEGSIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTE
                     DYDAIILAAAGLRRMGWSDDIVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKV
                     HNDEVAKCVTAERTFLAEMDGSCQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTM
                     NGTDPVELGKTVSNKLKEQGAYEIIKRLNEQH"
     gene            1080..1748
                     /locus_tag="PF788_002445"
     CDS             1080..1748
                     /locus_tag="PF788_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDG6304686.1"
                     /translation="MKPVVVMTQTNDMQSDLVSIIHKPFIDIKPLNFDIHLLNQRYDW
                     LIFSSKNAVKFFYKYLKGINVDNIAVIGSKTAQYCESLGIRVDFMPNDFSQEGFLKSF
                     NQTNQKILLPSSELARPLLLAALSKDNEVVKIDLYTSVPNKQNIQDVKEMIEHQQIDA
                     LTFSSSSAVRYYFNEGFVPKFKSYFAIGEQTARTIKSYQQPVTIAEIQTLESLIEKIL
                     ESRG"
     gene            1751..2725
                     /gene="hemB"
                     /locus_tag="PF788_002446"
     CDS             1751..2725
                     /gene="hemB"
                     /locus_tag="PF788_002446"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001633925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDG6304687.1"
                     /translation="MKFDRHRRLRSSATMRDMVRENHVRKEDLIYPIFVVEKDDVKKE
                     IKSLPGVYQISLNLLESELKEAYDLGIRAIMFFGVPNSKDDIGTGAYIHDGVIQQATR
                     IAKKMYDDLLIVADTCLCEYTDHGHCGVIDDHTHDVDNDKSLPLLVKTAISQVEAGAD
                     IIAPSNMMDGFVAEIRRGLDEAGYYNIPIMSYGVKYASSFFGPFRDAADSAPSFGDRK
                     TYQMDPANRLEALRELESDLKEGCDMMIVKPALSYLDIVRDVKNHTNVPVVAYNVSGE
                     YSMTKAAAQNGWIDEERVVMEQMVSMKRAGADMIITYFAKDICRYLDK"
     gene            2773..4059
                     /gene="hemL"
                     /locus_tag="PF788_002447"
     CDS             2773..4059
                     /gene="hemL"
                     /locus_tag="PF788_002447"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDG6304688.1"
                     /translation="MRYTKSEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGS
                     KIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVI
                     DRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVA
                     TLGLPDSPGVPEGIAKNTITVPYNDLDALKIAFEKFGNDIAGVIVEPVAGNMGVVPPI
                     EGFLQGLRDITTEYGALLIFDEVMTGFRVGYHCAQGYFGVTPDLTCLGKVIGGGLPVG
                     AFGGKKEIMDHIAPLGNIYQAGTLSGNPLAMTSGYETLSQLTPETYEYFNMLGDILED
                     GLKRVFAKHNVPITVNRAGSMIGYFLNEGPVTNFEQANKSDLKLFAEMYREMAKEGVF
                     LPPSQFEGTFLSTAHTKEDIEKTIQAFDTALSRIVK"
     gene            4120..4221
                     /locus_tag="PF788_002448"
     CDS             4120..4221
                     /locus_tag="PF788_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304689.1"
                     /translation="MGGDLIVKVHICFVVKTASGYCYLNKREAQAAI"
     gene            4255..>5146
                     /locus_tag="PF788_002449"
     CDS             4255..>5146
                     /locus_tag="PF788_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HDG6304690.1"
                     /translation="MAMIYRNNFIVFVLSFFISILLYSSHVLLPFMFGPIIASIICVK
                     VFKLDIKWPFLLSELGIVLLGVQIGSTFTKNVVMDIKNNWLSIIVVSISILLIAIVMA
                     FVFKKIARINTETAILSVIPGALTQMLVMAEQDKRANLLVVSLTQTSRIIFVVVLVPF
                     ISYFFHDGNMHANGKLTKVLPLSQVLNIGQIVILAIAIFIVYLIMSKIKFPTFQLLAP
                     LIVLIVWNFSTGLTFTLDHWLLNMAQLIYMIRIGVQIAHLLSDLKGRLAIAITIQNIM
                     LIIGALIMVYIIHFFDNNPIN"
BASE COUNT         1774 a          714 c         1002 g         1656 t
ORIGIN      
        1 ttgaattcaa gatatttaat atactataac attattttat tttgcttaaa tatgattaat
       61 ttattttttg caacacattt tgtgaattga gaaaataatc tagagcaatc cgttcctagg
      121 aggaattgaa catgcgtaaa ttagtcgttg gctccagaag aagtaaatta gctttaacac
      181 aaagccagca atttattgat aaattaaaag ctgtcgagcc aaatctagaa attgaaatta
      241 aagaaattgt cacgaaaggc gatcgtatag tagataaaca attgtctaaa gtcggaggca
      301 aaggcttatt tgttaaagaa atacaacatg aactttttga aaaaaatatc gatatggcaa
      361 tacactcgct taaagacgta ccaagtgtaa ttccggaagg tttaacatta ggttgtatcc
      421 ctgatagaga attacctttt gatgcgtata tttctaaaac acatacacca ctatcccaat
      481 tgccagaagg cagtattatt ggtactagtt cattacgtcg tggtgcacaa atattatcta
      541 agtatcctaa tttagagatt aaatggatta gaggtaatat agatacacga ttagaaaagt
      601 tacaaactga agattatgat gcgattattt tagctgcagc tggtttaaga agaatgggct
      661 ggtcagatga tattgtaaca tcttatcttg atagagatac attgttacct gcaatcggac
      721 aaggtgcttt agggatagaa tgtcgtagtg acgatgaaga actattaaca ttattaagca
      781 aagtacataa tgatgaggtt gcaaaatgtg tgactgctga acgaacgttt ttagcagaaa
      841 tggatggtag ttgtcaggtg ccaattgcag gatatgctac aatctcagat caaaacgaaa
      901 tcgaatttac aggtttaatt atgaccccag atggtaaaga acgatttgaa tatacaatga
      961 acggaacaga tccggttgag ttaggcaaaa cagtgagtaa caaattaaaa gagcaaggtg
     1021 cttatgaaat tataaaacgc ttaaatgaac aacattaaat aatggagtga cgtttaaata
     1081 tgaagccagt tgtagttatg acacaaacaa atgacatgca aagtgattta gtatcaatta
     1141 ttcacaaacc ctttattgat ataaagccac taaattttga tattcatttg ttaaatcaac
     1201 gctatgactg gcttattttt tcatctaaaa atgctgtgaa attcttttat aaatatctaa
     1261 aaggaattaa tgttgataac attgctgtga taggaagtaa gacagcgcaa tattgtgaat
     1321 cacttggcat tcgagttgat tttatgccaa acgacttttc tcaagaagga tttttaaaat
     1381 catttaatca aactaaccaa aaaatacttt tgccttcgag tgaattggcg agaccattgt
     1441 tattagcagc gttatctaaa gataatgaag ttgttaaaat agatttatat acttcagtgc
     1501 ctaacaaaca aaatatacaa gatgttaaag aaatgataga acatcaacaa atcgatgcat
     1561 taacattttc aagttcgtcg gcagtacgtt attattttaa tgaaggattt gtaccaaaat
     1621 tcaagtcgta ttttgctatt ggagaacaaa cagcacggac cattaaatca tatcaacaac
     1681 cagtaacaat tgcagaaatt caaacactcg aatcactaat tgaaaagatt ttagaaagta
     1741 ggggctaaaa atgaaatttg atagacatag aagattgaga tcatcagcga caatgagaga
     1801 tatggttaga gagaatcatg taagaaaaga agatttaata tatccaattt ttgtagttga
     1861 aaaagacgat gtgaaaaaag aaattaagtc attgccaggt gtataccaaa tcagtttgaa
     1921 tttacttgaa agtgaattaa aagaagctta tgacttaggc atacgtgcca ttatgttttt
     1981 cggtgttcca aactcaaaag atgatatagg tactggtgca tacattcacg atggtgttat
     2041 tcaacaggca acacgtattg ctaaaaaaat gtatgatgac ttattaattg ttgcagacac
     2101 ttgtttatgt gaatatactg atcatggtca ttgtggcgtg attgatgacc atacacatga
     2161 cgttgacaat gataaatcat tgccactact tgttaaaaca gcaatttctc aagtggaagc
     2221 tggtgctgat attattgcgc caagtaatat gatggatggt tttgttgctg aaattcgtcg
     2281 tggattagat gaagccggct attacaatat tcctataatg agttatggtg tcaagtatgc
     2341 atcaagtttc tttggacctt ttagagatgc agcagattca gcgccatcat ttggggatag
     2401 aaaaacgtat cagatggacc ctgctaaccg tttggaagca cttcgtgaat tagaaagtga
     2461 tcttaaagaa gggtgcgaca tgatgattgt taaacctgct ctaagttatt tagatatagt
     2521 tcgagatgtt aaaaatcata cgaatgttcc agttgttgca tataatgtga gtggagaata
     2581 tagtatgact aaagcagcgg cacaaaatgg ttggatagat gaagaacgtg tcgttatgga
     2641 acaaatggtt tcaatgaaac gtgcaggtgc tgatatgatt attacgtatt ttgcaaagga
     2701 catttgtcgc tatttagata aataaggttt tatatttatg attttccata aactgtagga
     2761 ggaatttact ttatgagata tacgaaatca gaagaagcaa tgaaggttgc tgaaacttta
     2821 atgcctggtg gtgtaaatag tccagtacgc gcatttaaat cagtagatac accagcaatt
     2881 tttatggatc acggtaaagg ttcaaaaatt tatgatatcg atggtaacga gtatatcgac
     2941 tatgtactaa gttggggacc acttatttta ggacatagag accctcaagt tattagtcat
     3001 ttacatgaag caattgataa aggtacaagt tttggtgcat caacattact tgaaaataaa
     3061 ttggcgcagc tcgttattga ccgagtacct tcaatagaaa aagtgcgtat ggtgtcatct
     3121 ggtacagaag ctacattgga tactttaaga ttagcacgtg gttatactgg cagaaataaa
     3181 attgtgaaat ttgaaggttg ctatcatggt catagtgatt cgttattaat caaagctggt
     3241 tctggggtgg caacattagg attgccggat tctcctggtg tgcctgaagg tattgctaaa
     3301 aatacaatta cagttccata caatgattta gatgcactta aaatcgcttt cgaaaaattt
     3361 ggaaacgata ttgctggtgt aatcgtagaa cctgttgctg gtaatatggg tgtcgtaccg
     3421 ccgattgaag gttttttaca gggattaaga gatattacga ctgaatacgg cgcattgcta
     3481 attttcgatg aagtaatgac tggtttcaga gtcggttatc attgtgcaca aggttacttt
     3541 ggtgtgacac cagatttaac ttgcttagga aaagttatcg gtggaggact acctgtaggt
     3601 gcatttggtg gtaaaaaaga aatcatggat catatagcac cattaggaaa tatttatcaa
     3661 gcgggtacgt tatcaggaaa tcctcttgca atgacaagtg gttatgaaac gttaagccaa
     3721 ttaacgccag agacatatga gtattttaat atgttaggcg atatacttga agacggttta
     3781 aaacgtgtat ttgctaaaca caatgtacca ataactgtaa atagagcagg ttcaatgatt
     3841 ggttatttct taaatgaagg acctgtaact aattttgaac aagcgaataa aagtgatttg
     3901 aaattatttg cagaaatgta tcgagaaatg gcaaaagaag gtgtgttttt accaccatct
     3961 caatttgaag gtacattctt atctacggca cacacgaaag aagatattga aaaaacgatt
     4021 caagcatttg atacggcttt aagtcgtatt gtaaaataaa tatacggaca aattgagagc
     4081 ctgaactttg ttcaggctct ttttaaatgt atataaggca tgggcggcga cttgatagtg
     4141 aaagtccata tatgctttgt agtcaaaact gctagcggat attgttatct taacaaacgt
     4201 gaagctcaag cagcaattta gtcattttat tttttattga aagaagtgga aaacatggca
     4261 atgatatata gaaataattt cattgtgttc gttttatcat tttttattag tattctactg
     4321 tattcatcgc acgtattact tccatttatg tttggtccta ttatcgcatc aatcatttgt
     4381 gtaaaagttt tcaaacttga tattaaatgg ccattcttac ttagtgaatt aggtattgta
     4441 ctattaggtg tgcaaatcgg atcaacgttt acgaaaaatg tcgttatgga tattaaaaac
     4501 aattggcttt cgattattgt tgtatctatt tcgatattat taattgcaat agtaatggca
     4561 tttgttttta aaaaaattgc acgtattaat acagaaacag ctattttaag tgttatacca
     4621 ggagcactaa cacaaatgct ggtcatggct gaacaagaca aacgtgctaa tttgttagtt
     4681 gttagcttaa cgcaaacatc acgaattata tttgttgttg ttttagtacc gttcatttca
     4741 tatttttttc atgatggtaa catgcatgcg aatggaaagt taacaaaagt cttgccttta
     4801 tcacaagtat taaacatagg gcaaatagtt attttagcga tagctatctt tatagtttat
     4861 ctaattatgt ctaaaataaa gtttccaaca tttcaattat tagcaccact cattgtatta
     4921 attgtttgga atttttctac aggtttaaca tttacactag atcattggtt gttgaacatg
     4981 gcacaactaa tatatatgat tagaattgga gttcaaattg cgcatttatt gtcagattta
     5041 aaaggtagac tagcaatcgc aattacaatt caaaatatta tgttgataat tggtgcgcta
     5101 atcatggttt atatcataca tttctttgat aataatccta ttaatg
//
LOCUS       DAMQWL010000147         5111 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.151, whole genome shotgun sequence.
ACCESSION   DAMQWL010000147 DAMQWL010000000
VERSION     DAMQWL010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5111
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.151"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            80..313
                     /locus_tag="PF788_002450"
     CDS             80..313
                     /locus_tag="PF788_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304691.1"
                     /translation="MFYNKYKNVSTYIIIFLVSSAAFAIFLLSANISAHSEQVYEMTD
                     HQIKNNTINKAYEHKDPTNNSEQRDGKVFALIN"
     gene            449..688
                     /locus_tag="PF788_002451"
     CDS             449..688
                     /locus_tag="PF788_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HDG6304692.1"
                     /translation="MSNSDLNIERINELAKKKKEVGLTQEEAKEQTALRKAYLESFRK
                     GFKQQIENTKVIDPEGNDVTPEKIKEIQQKRDNKN"
     gene            809..2797
                     /gene="tkt"
                     /locus_tag="PF788_002452"
     CDS             809..2797
                     /gene="tkt"
                     /locus_tag="PF788_002452"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001661967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDG6304693.1"
                     /translation="MFNEKDQLAVDTLRALSIDTIEKANSGHPGLPMGAAPMAYTLWT
                     RHLNFNPQSKDYFNRDRFVLSAGHGSALLYSLLHVSGSLELEELKQFRQWGSKTPGHP
                     EYRHTDGVEVTTGPLGQGFAMSVGLALAEDHLAGKFNKEGYNVVDHYTYVLASDGDLM
                     EGISHEAASFAGHNKLSKLVVLYDSNDISLDGELNKAFSENTKARFEAYGWNYLLVKD
                     GNDLEEIDKAITTAKSQEGPTIIEVKTTIGFGSPNKAGTNGVHGAPLGEVERKLTFEN
                     YGLDPEKRFNVSEEVYEIFQNTMLKRANEDESQWNSLLEKYAETYPELAEEFKLAISG
                     KLPKNYKDELPRFELGHNGASRADSGTVIQAISKTVPSFFGGSADLAGSNKSNVNDAT
                     DYSSETPEGKNVWFGVREFAMGAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLSSIM
                     GLNATFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALES
                     ESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTVYGSEETPEFLLLASGSEVSLAVE
                     AAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVG
                     TAGKVIAIDGFGASAPGDLVVEKYGFTKENILNQVMSL"
     gene            3075..3317
                     /locus_tag="PF788_002453"
     CDS             3075..3317
                     /locus_tag="PF788_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HDG6304694.1"
                     /translation="MATWLAIIFIVAALILGLIGGFLLARKYMMDYLKKNPPINEEML
                     RMMMMQMGQKPSQKKINQMMTMMNKNMDQNMKSAKK"
     gene            3304..3402
                     /locus_tag="PF788_002454"
     CDS             3304..3402
                     /locus_tag="PF788_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304695.1"
                     /translation="MRKSKFAIDRGYFPDMEMASFYNQINKNKYVY"
     gene            3496..3963
                     /locus_tag="PF788_002455"
     CDS             3496..3963
                     /locus_tag="PF788_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001566616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcdC family protein"
                     /protein_id="HDG6304696.1"
                     /translation="MLYLIFSIIVALFMGTIVIVIRMKAQNYPVNEKKIVLPPFFMAT
                     GALMYVVPYFRLTGSEMLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILIS
                     LLIIRTVMKIFISNEIDPGELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN"
     gene            4087..>5111
                     /locus_tag="PF788_002456"
     CDS             4087..>5111
                     /locus_tag="PF788_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HDG6304697.1"
                     /translation="MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIV
                     IAGDLYDTTYPSKDAIMLLEQAIGKLNLELRIPIIIISGNHDGKERLNYGASWFEHNQ
                     LFIRTDFTSINSPIEINGVNFYTLPYATVSEMKHYFEDDTIETHQQGITRCIETIAPE
                     IDEDAVNILISHLTVQGGKTSDSERPLTIGTVESVQKGVFDIFDYVMLGHLHHPFSIE
                     DDKIKYSGSLLQYSFSEAGQAKGYRRVTINDGIINDVFIPLKPLRQLEIISGEYNDVI
                     NEKVHVKNKDNYLHFKLKNMSHITDPMMSLKQIYPNTLALTNETFNYNEENNAIEISE
                     KDDMSII"
BASE COUNT         1866 a          686 c          947 g         1612 t
ORIGIN      
        1 tttgttcgtt aaaatattga cacagaacat aagttctgat aaattactaa tacaaacaaa
       61 tgttctagga gtgaaaatga tgttttacaa taaatataaa aacgtatcaa catatatcat
      121 catattttta gtttcaagtg cagcctttgc aatattcttg ttaagtgcga acattagtgc
      181 tcactcggaa caagtgtacg aaatgactga ccatcaaatt aagaacaata cgataaataa
      241 agcatacgaa cataaagacc ctacaaacaa tagcgaacaa agagatggga aagtgttcgc
      301 tttaataaat tgatacattg tcacaacgtt attttgccta tttttgcgaa atagcgtttt
      361 ttattacttt tttgctgatc ttaaatttgt tatattttgt taaagtatta taatgattga
      421 ataaacaaat tgaaggtagg ttttttaatt gagtaattct gatttgaata tcgaaagaat
      481 taacgagtta gctaaaaaga aaaaagaagt aggattaact caagaagaag caaaggagca
      541 aacagcctta agaaaagctt atcttgagag ttttagaaaa gggtttaaac aacaaattga
      601 aaatactaaa gtaattgatc cagaaggtaa tgatgtaaca cctgaaaaaa ttaaagagat
      661 acaacaaaaa agagataata aaaattaaat cacaaatctg taaagaattt tctgacatta
      721 taacttgaaa taagtatttt acttatcttt ttattttaaa ataagttata atgtatttga
      781 taaaattgaa gaagggaaga tacacaagat gtttaatgaa aaagatcaat tagctgttga
      841 tacgctacgt gcactaagta tcgacacaat cgaaaaagcg aattctggtc atccaggatt
      901 acctatggga gctgccccaa tggcttacac tttgtggaca cgtcatctga attttaatcc
      961 acaatctaaa gattacttca atagagaccg tttcgtatta tctgcagggc atggttcagc
     1021 attattgtat agcttgttac atgtttctgg tagtttagaa ttagaagaat taaagcaatt
     1081 tagacaatgg ggttctaaaa caccaggtca tcctgaatac agacatacag atggtgtaga
     1141 agttactacc ggaccacttg gacaaggttt tgctatgtca gtaggattag ctttagcaga
     1201 agatcaccta gcagggaaat ttaataaaga aggatataat gttgtagatc attacacata
     1261 tgtattagct tctgacggtg atttaatgga aggtatatcg catgaagcag cttcatttgc
     1321 tggacataat aaattaagta aattagttgt tttatacgat tcaaatgata tttcattaga
     1381 tggcgaatta aacaaagctt tttctgaaaa cacaaaagct cgttttgaag catatggttg
     1441 gaattactta ctagttaaag atggtaatga tttagaagaa attgataaag cgattactac
     1501 agctaaatct caagaaggac caacgattat tgaagttaaa acaacaatcg gatttggttc
     1561 accgaataaa gcaggaacta atggtgttca tggggcacct ttaggtgaag ttgaaagaaa
     1621 attaacattc gaaaattacg gtttagatcc tgaaaaacgt tttaatgttt cagaagaggt
     1681 atacgaaatt ttccaaaata ctatgttaaa acgtgctaat gaagatgaat ctcaatggaa
     1741 ttcattatta gaaaaatatg cagaaacata tcctgaatta gcagaagaat ttaaattagc
     1801 gattagtggt aaattgccta aaaattataa ggatgaatta ccacgttttg aactgggtca
     1861 taatggtgca tctcgtgctg attctggtac tgttattcaa gcaatcagta aaactgtccc
     1921 ttcattcttt ggtggatcag cagaccttgc tggttcaaac aaatccaatg taaatgatgc
     1981 aactgattat agttctgaaa cacctgaagg taaaaatgtg tggtttggtg tacgtgaatt
     2041 tgctatgggt gctgctgtaa atggtatggc tgcacatgga ggtttacatc catatggtgc
     2101 aacattcttc gtatttagtg attatttaaa accagcgtta cgtttatcat caattatggg
     2161 attaaatgca acgttcatct tcacacatga ttcaattgca gtaggtgaag atggtcctac
     2221 tcatgaacca attgagcaat tagctggatt aagagccatt ccaaatatga atgttatccg
     2281 tcctgctgat ggtaatgaaa caagagtagc atgggaagtt gccttagaat ctgaatctac
     2341 acctacttca ttagtattga cacgtcaaaa cttaccggta ttagatgtac cagaagatgt
     2401 agttgaagaa ggcgttcgaa aaggtgccta tacagtttat ggctctgaag agacaccaga
     2461 attcctatta ttagcttcag gttcagaagt tagtcttgca gttgaagctg ctaaagatct
     2521 tgaaaaacaa ggtaaatcag tacgtgttgt ttcaatgcct aactggaatg catttgaaca
     2581 acaatctgaa gaatataaag aatcagttat tccatcaagc gtaacaaaac gtgttgcgat
     2641 tgaaatggct tcaccgcttg gatggcataa atatgtaggt actgcaggta aagttattgc
     2701 tattgacggc tttggcgcaa gtgcacctgg cgatttagta gttgaaaaat atggatttac
     2761 aaaagaaaat atcttaaacc aagttatgag cttataagaa taatttataa agcgagtatg
     2821 tttagaagtc taggatgcat aatcttaggc ttcttttaaa gtgttgaaat ttagagtata
     2881 gcacttaaac tacatcataa gtgataagtt atgaaagtat actatttcag attaatcttt
     2941 aaaagctctg ttataacagc atgatttttg atattatttt tagtatcgat attaaaatac
     3001 ttgaataaac tagttcttga aataatgtga tgaatttagt aaaattcagt aggataaaga
     3061 aagcgggtga aacaatggca acttggttag caattatttt tatagtagct gcattaattt
     3121 taggtttaat tggaggtttc cttttagcta gaaaatatat gatggactac ttgaagaaaa
     3181 acccaccaat caacgaagaa atgcttcgta tgatgatgat gcaaatgggt caaaaacctt
     3241 ctcagaagaa aattaatcaa atgatgacga tgatgaataa aaatatggat caaaatatga
     3301 agagtgcgaa aaagtaaatt cgcaattgat agaggctatt ttccagatat ggaaatggcc
     3361 tctttttata atcaaattaa taagaataaa tatgtttatt aaaattaaag ttaacaaaat
     3421 gacgaataga ctgagaaatg ctataattca ttttgtatga tttacagaga gtttatttaa
     3481 cgagaaggtg tctgcgtgct ctatttaata ttttcaatca ttgtagcttt atttatggga
     3541 actatagtta tagttattcg tatgaaagct caaaattatc cggtaaatga gaaaaaaata
     3601 gttttgccac cgttttttat ggcgaccggt gcattgatgt acgtcgttcc atattttagg
     3661 ctaacaggat cggaaatgct agaagccttt ataattggtt tgcttttttc tacagttcta
     3721 atttggactt ctcgatttga agtcaaaggt acagaaattt atatgaaacg atctaaagca
     3781 tttccagtta ttttgatttc attacttatc attcgtactg tgatgaaaat attcattagt
     3841 aatgaaatag atcctggaga attaggcggc atgttctttt tattagcatt ctgtatgatt
     3901 gttccttgga gagcagcaat gctatataaa tacaaaaaac taaagaaaac attaatcaat
     3961 taattacttt taaaaccact tgtgatcgac ttctaaatca gtcaatgagt ggttttaatt
     4021 ttacttgaaa aggtgaaatg attatattaa aataaaagcg aacaaatgtt ctatatggag
     4081 gcagtaatga aaattataca tacagcagac tggcacttag ggaaaatatt aaatggcaaa
     4141 cagcttttag aagatcaagc gtatatttta gatatgttcg tagaaaaaat gaaagaagaa
     4201 gaacctgata tcattgtgat agctggagat ttatatgaca caacatatcc aagtaaagat
     4261 gcaatcatgt tattagaaca agcgattgga aagttaaatt tagaactgcg tataccaata
     4321 attattatta gtggaaatca cgatggtaaa gagaggttaa actatggggc gagttggttt
     4381 gaacataatc agttatttat aagaacagat tttacatcga ttaattcacc aatagagata
     4441 aatggggtta atttttatac actcccttat gctactgtga gcgaaatgaa acactacttt
     4501 gaagatgaca ccattgaaac acatcaacag ggaattacgc gctgtattga aacaatagca
     4561 ccggaaattg atgaagatgc cgtcaatatt ttaattagtc atctgactgt tcaaggtgga
     4621 aagacatctg attctgaaag accattaact attggaacgg ttgaatcagt tcagaaaggt
     4681 gtttttgata tatttgatta tgtcatgcta ggtcacttgc atcatccatt tagtatagaa
     4741 gacgacaaaa ttaaatatag tggctcctta ttgcagtatt cattttcgga agcgggtcaa
     4801 gctaaagggt atagacgtgt aacaattaat gatggcatta ttaacgatgt atttattcct
     4861 cttaagccac ttagacaatt ggaaattatc tcaggcgaat ataatgatgt tattaatgaa
     4921 aaagttcatg tgaaaaataa agataattat ttacatttta aacttaaaaa tatgtctcat
     4981 attactgatc caatgatgag tttaaaacaa atttatccta atactttagc gctgacgaat
     5041 gaaactttta attacaatga agaaaataat gctatagaaa taagtgaaaa agatgacatg
     5101 tcaattatcg a
//
LOCUS       DAMQWL010000148         5023 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.152, whole genome shotgun sequence.
ACCESSION   DAMQWL010000148 DAMQWL010000000
VERSION     DAMQWL010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5023
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.152"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(309..509)
                     /locus_tag="PF788_002457"
     CDS             complement(309..509)
                     /locus_tag="PF788_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001059082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDG6304698.1"
                     /translation="MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEG
                     QKVEFDIVEGDRGEQAANVVKM"
     gene            complement(866..1552)
                     /locus_tag="PF788_002458"
     CDS             complement(866..1552)
                     /locus_tag="PF788_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDG6304699.1"
                     /translation="MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFYFATSCL
                     VLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTV
                     KLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQR
                     TDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNI
                     WSEDNADSGQ"
     gene            complement(1893..2363)
                     /locus_tag="PF788_002459"
     CDS             complement(1893..2363)
                     /locus_tag="PF788_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304700.1"
                     /translation="MKRKVLVLTMGVICATQLWHSNHANALVTESGANDTKQFTEIVS
                     EEKVITVEHAQINIFQSNSNSNLMEFNILTMGGKSGAMVGYSEIDSSHFTDRDKRVIR
                     RDHVKEAQSLVENYKDTQSADARMKAKQKVNTLSKPHQNYFNKQIDKVYNGLQR"
     gene            complement(2698..3720)
                     /gene="emp"
                     /locus_tag="PF788_002460"
     CDS             complement(2698..3720)
                     /gene="emp"
                     /locus_tag="PF788_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular matrix protein-binding adhesin
                     Emp"
                     /protein_id="HDG6304701.1"
                     /translation="MKKKLLVLTMSTLFATQIMNSNHAKASVTESVDKKFVVPESGIN
                     KIIPAYDEFKNSPKVNVSNLTDNKNFVASEDKLNKIADSSAASKIVDKNFVVPESKLG
                     NIVPEYKEINNRVNVATNNPASQQVDKHFVAKGPEVNRFITQNKVNHHFITTQTHYKK
                     VITSYKSTHVHKHVNHAKDSINKHFIVKPSESPRYTHPSQSLIIKHHFAVPGYHAHKF
                     VTPGHASIKINHFCVVPQINSFKVIPPYGHNSHRMHVPSFQNNTTATHQNAKVNKAYD
                     YKYFYSYKVVKGVKKYFSFSQSNGYKIGKPSLNIKNVNYQYAVPSYSPTHYVPEFKGS
                     LPAPRV"
     gene            complement(4071..>5023)
                     /locus_tag="PF788_002461"
     CDS             complement(4071..>5023)
                     /locus_tag="PF788_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000791729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="coagulase"
                     /protein_id="HDG6304702.1"
                     /translation="LYSKLDLIMGYKDEERANKKAVNKRMLENKKEDLETIIDEFFSD
                     IDKTRPNNIPVLEDEKQEEKNHKNMAQLKSDTEAAKSDESKRSKRSKRSLNTQNHKPA
                     SQEVSEQQKAEYDKRAEERKARFLDNQKIKKTPVVSLEYDFEHKQRIDNENDKKLVVS
                     APTKKPTSPTTYTETTTQVPMPTVERQTQQQIIYNAPKQLAGLNGESHDFTTTHQSPT
                     TSNHTHNNVVEFEETSALPGRKSGSLVGISQIDSSHLTEREKRVIKREHVREAQKLVD
                     NYKDTHSYKDRINAQQKVNTLSEGHQKRFNKQINKVYNGK"
BASE COUNT         1491 a          806 c          698 g         2028 t
ORIGIN      
        1 tattattgtt aaacattttg agtgtttaac attacttctt gttatcgcca tatacagact
       61 ttaattctcg tcattattaa agttctgtat tggcgctttt ttatattcaa aatcaaaagt
      121 cggacagatg aaaagtaaaa aacttttcca tcagttcgat ttattttaga accattatat
      181 attgttaaat ctccaactaa atttattgga caaaaaaata acggctagtg cttttaccac
      241 accaactgtt atcgatttaa agcataaaaa aacagcccta tagtaaggac tgtttgaata
      301 agttaaaatt acattttaac tacgtttgca gcttgctcgc cacggtcgcc ttcaacgatg
      361 tcgaattcaa ctttttggcc ttcttctaat gatttgtatc catcttcagc gattgctgag
      421 aagtgtacga atacgtcgct accatcttct ctttcgatga aaccaaaacc tttttctgca
      481 ttaaaccatt taactgtacc gttattcata ttgaatacct ccgtcgtgct tttgcactaa
      541 atattttgta acaaattcat aaatgaaaag gagaatattc tatataaata actcacattt
      601 ttcttcacgc tctttattac ttaactttca ttatacactt ttaaatatag aagtaaagca
      661 ttattttatt ttctgtgata atacacattg aactatatag taacattcca ttttaatact
      721 aaatttaaaa tttttatttt ctaatattaa atacacttac ttttgatact atttactttt
      781 ttaattctga attgataata aatcatatcg tgatctaaaa attataaaag tgccactagc
      841 agcagtgaca cttttacaat gagcattatt gacctgaatc agcgttgtct tcgctccaaa
      901 tatttaattt ctcttttttt gcttgtgctt cactttttct taaaagttgt tcatgtgtat
      961 tgttaggttt ataaacataa gcaactttag ccaagccttg acgaactaaa gcttcgttta
     1021 ccatttttcc atcagcataa atatacgcta agccacgtcc atatttatca gttctttgac
     1081 ctttgtcaaa ctcgacttca attttctttg cattttctac catttttttc gtaaatgcac
     1141 ttgcttcagg accatatttc tctacacctt ttttaggatg ctttgtttca ggtgtatcaa
     1201 ccaataatag tctgaatgtc attggttgac ctttgtacat taatttaacc gtatcaccat
     1261 caatcgcttt aattaatgtc gcaggttctt tatgtaattt tttagttgaa gttgcactat
     1321 atactgttgg atcttcagaa ccacttctat ttacgccatt atctgtttgt gatgcatttg
     1381 ctgagctact tagacttgaa actacaacta aagttaacac taaacaacta gtagcgaaat
     1441 agaaaaacct ctttgcgtat tgccctttcg aaacattact gatagccatc cctataagta
     1501 atattgaaac gattgccata catatgccag cacttaataa gtattctgtc ataactaaca
     1561 cctctttctt tttagttaat tttaatatta aacgttaatt aattataatt ctacattttt
     1621 acaattaatt aataaaaatt taataattat aataaaataa ctatacttac ttttatgtat
     1681 tttctatatt ttaggtgcca gaacttatat atttagcctt atttgtaaaa ttaaaaagcc
     1741 tacaacatga atcgttgcag actatcatat cgagacaaag aggtttatta gtgtctctat
     1801 atctatgtgg aatttgaaaa gattatttat aatatttacg gggataaatt gtcatttaaa
     1861 aacgagatgt ataacttata atttactttg gattagcgtt gtaatccatt ataaacctta
     1921 tcaatttgtt tattgaaata gttttgatgc ggtttgctta atgtgttaac tttttgtttg
     1981 gctttcatcc tagcatcagc actttgtgta tctttatagt tctctactaa gctttgtgct
     2041 tctttaacat gatcacgtct aataacgcgt ttgtcacggt ctgtgaaatg tgatgagtca
     2101 atttcactat aaccaaccat agctcctgat ttaccgccca ttgttaatat gttgaactcc
     2161 atcaagtttg aattgctatt agattgaaaa atattaattt gagcatgttc aactgttata
     2221 actttctctt ccgatacaat ttcagtaaat tgcttagtat catttgcgcc actctctgtt
     2281 actaatgcgt ttgcgtgatt agaatgccat aattgagttg cacaaattac acccattgtt
     2341 agtactaata ctttcctttt catttgttta tgctccctta tttgctttga tataaaaacc
     2401 gactttttca ccctgttttc ttcgccattg aaaattatat accaatattt tagaaacaat
     2461 aattaacttg cgatgaacaa actattaaca ataatcttga gtattatatt tatcttaatt
     2521 aataatatat ttatttaaga ttatgttact tccaactttc aaagtagaaa aacggtataa
     2581 tttgttgatg ggtgtttatt gataaactgc aaaaaataca gcctacaacc acatagattg
     2641 tagactatat ttaaaataat aggtatttat catatctcgt aaacttagtg ccaattttta
     2701 tactcgtggt gctggtaagc tacccttaaa ttcaggaacg tagtgtgtag ggctataact
     2761 tggaacagca tattgataat ttacattttt gatatttaat gatggtttcc caattttata
     2821 accatttgat tgtgaaaatg agaaatattt cttcacacct ttaactactt tataagaata
     2881 gaagtattta tagtcatatg ctttatttac tttagcattt tgatgtgttg ctgttgtgtt
     2941 attttggaaa cttggtacat gcatacgatg tgaattgtga ccatatggtg gaattacctt
     3001 gaaactattt atttgtggca caacacaaaa gtgattaatt ttaatgctag catgccctgg
     3061 tgtaacaaat ttatgcgcgt gatatccagg aactgcaaaa tgatgcttga taattaaaga
     3121 ttgagatgga tgtgtatatc taggcgattc tgatggttta acaataaagt gtttattaat
     3181 agaatccttt gcatgattta catgtttatg tacatgtgtt gatttgtatg aagtaataac
     3241 tttcttgtag tgggtttgcg tagtaatgaa gtggtggttt actttgtttt gcgtaataaa
     3301 tctatttact tctgggcctt tagcaacaaa atgcttatca acttgttgtg aagctggatt
     3361 gtttgttgct acattcacgc gattattgat ttctttgtac tctggcacaa tgtttcctaa
     3421 ctttgattct ggtacgacaa agtttttatc tacaatttta ctagctgccg atgaatctgc
     3481 aatcttattc aatttatctt cagaagctac aaagttttta ttgtcagtta aattactaac
     3541 atttactttt ggcgaattct taaattcatc gtaagctgga ataattttat taattcctga
     3601 ttctggaact acaaattttt tgtcaacact ctctgtcact gatgctttag cgtgatttga
     3661 attcataatt tgtgtagcaa atagcgtgct catagttaaa actaataatt tctttttcat
     3721 ctgttatttc tcctttatat agactcaata ttataaccaa tataatttcc ctgttatatt
     3781 cactaacagc attatatacc agaattttca gtataataat taacttgaag taaacgttgt
     3841 cttaacattt ttattgtttt tcagcttaaa attaattatt gatattgata gttaagcata
     3901 ataatttttt cgtaatataa agtgaaaaaa gtaatagtcc acacctgttt agaatgtgga
     3961 ctatactaga ttgcatcatt gaaatgatga ctttgatatt atttattgct agtttaaaat
     4021 gttgttattt ttacgacaaa ctcattattt gctttgcagc catgcattaa ttatttgcca
     4081 ttatatactt tattgatttg tttattaaaa cgtttttgat gaccttcact taaagtattt
     4141 actttttgtt gtgcatttat tcggtcttta taactatgtg tatctttata attatcaact
     4201 aacttttgag cttctctaac gtgttcacgc ttaattacac gcttctcacg ttcagttaga
     4261 tgagaagaat caatttgact tataccaacc agtgatcctg attttctacc aggtaaagca
     4321 gacgtttctt caaattcaac aacattatta tgcgtgtgat ttgaagttgt tggtgattga
     4381 tgcgttgttg tgaaatcatg actttcacca tttaatccag ccaattgttt tggtgcatta
     4441 taaataattt gttgctgagt ttgacgctca actgtaggca ttggtacctg tgtcgttgtt
     4501 tcagtatatg tagtcggtga tgttggtttc tttgttggtg cagaaaccac aagtttcttg
     4561 tcgttttcgt tgtcaatacg ttgtttatgc tcaaaatcat attctaatga cactacaggt
     4621 gttttcttaa ttttttgatt atccaaaaat ctcgcttttc tttcttctgc tcttttatca
     4681 tattcagctt tttgttgttc agaaacttct tgagatgcag gtttgtgatt ttgagtattt
     4741 aaacttcttt tacttctctt gcttcttttt gattcatcac tttttgctgc ttcagtgtca
     4801 gattttaatt gagccatatt tttatgattt ttctcttctt gtttttcatc ttctaaaaca
     4861 ggaatattat taggtcttgt tttatctata tcactaaaaa attcatcaat tatggtttct
     4921 aagtcttctt ttttattttc taacatcctt ttgttaactg cttttttatt tgctctttct
     4981 tcatctttat atcccataat taaatctaac ttactatata aac
//
LOCUS       DAMQWL010000149         5008 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.153, whole genome shotgun sequence.
ACCESSION   DAMQWL010000149 DAMQWL010000000
VERSION     DAMQWL010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5008
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.153"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(127..771)
                     /gene="trmB"
                     /locus_tag="PF788_002462"
     CDS             complement(127..771)
                     /gene="trmB"
                     /locus_tag="PF788_002462"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDG6304703.1"
                     /translation="MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEI
                     GSGMGQFITTLAAQNPHINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEY
                     FKDGEVSRIYLNFSDPWPKNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAY
                     SLESMSQFGMYFTKINLNLHQEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK"
     gene            complement(786..1577)
                     /locus_tag="PF788_002463"
     CDS             complement(786..1577)
                     /locus_tag="PF788_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001602611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HDG6304704.1"
                     /translation="MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAAL
                     SAEGIVPKLVWTKRIETGEVVTAQHWKNGRELSSNEMKQTRVAHLLKKIHNSRPLLSM
                     LKRMEMEPITPEIMLNKINASLSREVLTHHIVRKSLTYLEEHIPSLDSRFFTVVHGDV
                     NHNNWLLSDRDELFLVDWEGAMIADPAIDIGMLLYNYVPQQQWSEWLETYGVQESLNL
                     NKRMKWYTVIQSIGLVQWYEEQKRYKDMNTWLKFLNEVMNSNMFI"
     gene            complement(2127..2975)
                     /gene="dat"
                     /locus_tag="PF788_002464"
     CDS             complement(2127..2975)
                     /gene="dat"
                     /locus_tag="PF788_002464"
                     /EC_number="2.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino-acid transaminase"
                     /protein_id="HDG6304705.1"
                     /translation="MEKIFLNGEFVSPSEAKVSYNDRGYVFGDGIYEYIRVYNGKLFT
                     VTEHYERFLRSANEIGLDLNYSVEELIELSRKLVDMNQIETGAIYIQATRGVAERNHS
                     FPTPEVEPAIVAYTKSYDRPYDHLENGVNGVTVEDIRWLRCDIKSLNLLGNVLAKEYA
                     VKYNAVEAIQHRGETVTEGSSSNAYAIKDGVIYTHPINNYILNGITRIVIKKIAEDYN
                     IPFKEETFTVDFLKNADEVIVSSTSAEVTPVIKLDGEPVNDGKVGPITRQLQEGFEKY
                     IESHSI"
     gene            complement(2979..4388)
                     /gene="sapep"
                     /locus_tag="PF788_002465"
     CDS             complement(2979..4388)
                     /gene="sapep"
                     /locus_tag="PF788_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mn(2+)-dependent dipeptidase Sapep"
                     /protein_id="HDG6304706.1"
                     /translation="MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRK
                     ALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPV
                     VTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYF
                     KTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMV
                     PDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIG
                     VNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGV
                     ITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPF
                     VQKLVTAYRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQ
                     LFNATSIYLEAIYSLCVEE"
BASE COUNT         1607 a          970 c          679 g         1752 t
ORIGIN      
        1 atcggacaga tgaaaagtta aaaacttttt ccatcagtcc gatttattat agaaccttta
       61 tctatagaac cattatagta cgaaaaaaca cttatgattg tatgtgtaca taccctcata
      121 agtgctctat ttttgtgaat ggaatttcgc ttccatacga taaatacgtg accctttatc
      181 cgaaaatttc ttttcatatt ctgttaaaat attactgcca tcgtcttctt gatgtaaatt
      241 tagatttatt tttgtaaaat acattccaaa ttgagacata ctttctaaac tgtaggcaaa
      301 tagtcctctg ttatcagttt taaaatgtaa atctccttca tcatttaaga tttgttgata
      361 caacgctaaa aacgtatgat acgttaaacg tcgttttgca tgacgatttt ttggccatgg
      421 atctgaaaag ttcaaataaa tacgcgaaac ttcgccgtct ttaaaatatt catttaattc
      481 aatggcgtca ttacaaataa tctttaaatt tgttaaaccc atctctttaa ctttatccaa
      541 tactttataa acgatacttt tctcacgttc cattgaaata tagttaatat gaggattttg
      601 agcagctaat gttgtaataa actgccccat acccgaacca atttcaatgt gtatcggttg
      661 cgttttatca aaccattcag tcattttccc tgcatgttga ccgtccatgt caaccaattc
      721 aggatgatct tttaaataat cttcagccca tggtttgtat cgaactctca tattttattc
      781 tcctcttaaa taaacatgtt actattcata acttcattta ggaatttaag ccaagtgttc
      841 atatccttat atcttttttg ctcttcatac cattgaacaa gacctataga ttgaattacc
      901 gtataccatt tcatacgttt atttaaattc aagctctctt gaacaccata tgtttcaagc
      961 cattcagacc attgttgttg tggaacatag ttgtaaagca gcattccgat atcaattgcc
     1021 gggtctgcaa tcattgcacc ttcccaatca actaaaaata gttcatctcg atcggataat
     1081 aaccaattat tatgattcac atcaccatgt acaacagtga aaaaacgcga atctaaactc
     1141 ggtatatgct cttctaaata ggttaatgat tttctcacaa tatgatgtgt taaaacttct
     1201 cttgataaag aggcattaat tttattaagc ataatctcag gagtaatagg ttccatttcc
     1261 atacgcttta acatacttaa taaaggtcta gaattgtgta tcttctttaa taaatgtgca
     1321 actcttgttt gcttcatttc gtttgaagat agttcacgcc catttttcca atgttgtgct
     1381 gtaacaacct cgcctgtttc tatgcgtttc gtccatacta atttgggcac aataccttct
     1441 gctgataatg ccgcaataaa tggatttgaa tttcgtttta aaaacaactt ttgtccatct
     1501 tgttcagcca tatatgcttc accagatgca ccacctgctg aatcaagtgt ccaccctaat
     1561 tgataaaact gctccaactc gtccacctca ctttcaatta gaaaatggct ctagaaatag
     1621 gtttttcaag agccatatat tctaatttat aacaccatac tggtacaaat attatgtcca
     1681 gataattatt gtaaatcctc aaccaatgcc tacattacac gactaaattt aaatcgtaat
     1741 gtctgtcatt gacaccatac attctatagt cacttacttg acatataatg ttaccgtgtc
     1801 taaaactaca tgtttttgaa tctctgtagg cgataaactc tagttttcaa aataattgct
     1861 atcccatttt catggttagc ataaatttat gaactgtaac atttacgtac ttagtaaaat
     1921 atgatgcaca tcatatttgt aactcataga aaattttata atttttatca ttatatttca
     1981 actgaaaatg agaaacaaaa tggcactttt tactaatatg tgttttctaa acaacacttt
     2041 taagcttcgt tttaaattat aacataattc acttacgaaa gttgataaat ttaagtaatt
     2101 taatctaaaa atatgatgaa agaattttaa atactgtgtg actctatata cttttcaaat
     2161 ccttcttgta gttgacgtgt aattgggcca actttaccat cattaactgg ttcaccatct
     2221 aatttaataa caggtgtaac ctcagctgaa gtacttgaaa caataacttc atctgcgttt
     2281 ttcaagaaat ctacagtaaa cgtttcttct ttaaatggga tgttatagtc ttcggcaatt
     2341 tttttaatta caattcgtgt aataccatta agaatatagt tgttaatcgg atgtgtataa
     2401 atcacaccgt ctttaattgc ataagcatta cttgaagatc cttcagttac agtttcacct
     2461 cgatgttgaa ttgcttcaac tgcattatat ttcacagcat attcttttgc taatacattt
     2521 cctaataagt tcaagctttt aatgtcgcaa cgtaaccatc ggatatcttc aacggtaaca
     2581 ccattcacac cattttctaa atgatcataa ggacgatcat aactctttgt ataagcaaca
     2641 attgctggtt ctacttcagg tgtcgggaag ctatgattcc tttcagctac accacgcgtt
     2701 gcttgaatat aaattgcccc agtttcaatt tgattcatat caactaattt acgagatagt
     2761 tcaattaatt cttctacaga ataatttaaa tctaaaccaa tctcattggc actacgtaaa
     2821 aatctttcat aatgttctgt tactgtaaat aacttaccat tatatactcg aatgtattca
     2881 taaataccat cgccaaatac gtatcctctg tcgttgtatg aaacctttgc ttcacttgga
     2941 cttacaaact caccatttaa aaaaattttt tccatatatt attcctccac gcataatgaa
     3001 taaattgctt ctaagtaaat actagttgcg ttaaataact gttttttagt gatatattca
     3061 tttttctgat gcattaaatc ttcagaatca ctaaacattg cgccaaatgc tacacccttg
     3121 tctaagtttc tcgcataagt accgccacct atagtataag gttcagtcat atcatttgtt
     3181 tgatttctat atgcagtaac taacttttgt acaaaaggat catttttatc aacataatgt
     3241 ggtggttgga ctttacctaa tttcacttca aagccatatt gttgaatctc atttgcaaaa
     3301 cgatccatag ctttttcaaa ttcaaatcct tctgggtagc gtaagttgat accgaaaaga
     3361 cctgcgtttt cattatcata tgtaataaca ccaatgttag ttgtcacgtc acccatgaca
     3421 tctgtatgga atttcattcc catcttttca ccaaaatctg aattaaataa gtagcgatta
     3481 ctaaatgcta caaacgcttg tgcattatta tcaagattta atgatgctaa gaattttagt
     3541 aagtaaagac ccgcattcac accgatagat ggatccatac catgaaccgc tttaccttca
     3601 actgttaaaa ctagaatgcc actatcaaca gtactatcac cttgtaaatg attttgttct
     3661 aaaaagtact caaagtcttg aataacatct gtcatatttt ctttaacaag cactcttgct
     3721 tctgcatgat caggtaccat gttgtaacgt tcaccagatt taaaagttat taattcataa
     3781 tcaggttcat cttgatcttc agtaagttta ttttgaacta aatcaaatgt tgtaatgcct
     3841 ttttcaccat gaatacatgg aaattctgca tctggtgcaa aacctaatgt tggcatttct
     3901 tctgttttaa aatagcgatc cgtacatttc caatcagatt cttcatccgt accaataatc
     3961 atatgaatac gtttcttcca atccacattc atatcttcta atatcttaat tgcataataa
     4021 gcagcaattg ttggaccttt gtcatcaagt gtacctctag ctatgatagc atcttctgtt
     4081 acaaccggct cgaacggatt actatcccat ccatcaccag caggaacaac gtcaacatga
     4141 cataagatac ctaatacgtc atttccttta cctgcctcaa ttcttcctgc aatatgatcc
     4201 acatcatgtg ttgtaaatcc atctctatgt gcaatttcat acatgtagtc taatgcctta
     4261 cgaggacctg gaccaactgg tgcgtcttct gatgcttttg catcatctct cacactttca
     4321 attgctaata atccttttaa gtcattaatg atttgatctt cgtattgttg aactttttct
     4381 ttccacattc gaaatcgact tccttttttc tataagttaa attctatttt acatgaaaag
     4441 atataaaaac tacaataaga tgtcagaaaa taataaaaag gaacaaaacg atgctattga
     4501 tatgacacaa atcataaata gctgctttgt tcctttttta atttatatat ttaaaataca
     4561 catattcaag agctcgagat ataagtcaat gtactaggca cacaatttaa tattgacagt
     4621 aattaaccga acgaaaatgc gccccggggc cccaacatag agaatttcga aaagaaattc
     4681 tacagacaat gcaagttggc ggggccccaa catagaagct ggccaatagt tagctttcaa
     4741 taatgtgcaa gttggggtaa gggccccaac acagaagctg gccaatagtc agctttcaat
     4801 aatgtgcaag ttggggtaag ggccccaaca cagagaattt cgaaaagata aagaaatacg
     4861 ttttctttag atattagtat ttcttatgaa tgagtttcac gcatgtattc ttctttctat
     4921 atgcatatta gctatgacta acgataaaga acctgaaaca ctaataaatg tcctatagtt
     4981 tacaatatta tattggcagt agttgact
//
LOCUS       DAMQWL010000150         4996 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.154, whole genome shotgun sequence.
ACCESSION   DAMQWL010000150 DAMQWL010000000
VERSION     DAMQWL010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4996
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.154"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(304..726)
                     /locus_tag="PF788_002466"
     CDS             complement(304..726)
                     /locus_tag="PF788_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDG6304707.1"
                     /translation="MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPE
                     QLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKN
                     VISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD"
     gene            874..1590
                     /locus_tag="PF788_002467"
     CDS             874..1590
                     /locus_tag="PF788_002467"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HDG6304708.1"
                     /translation="MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENV
                     TVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMID
                     IEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVK
                     LAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIG
                     VPQAPGQIDVTDLKAQVTLY"
     gene            1673..2212
                     /locus_tag="PF788_002468"
     CDS             1673..2212
                     /locus_tag="PF788_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDG6304709.1"
                     /translation="MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMRE
                     PWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQN
                     DENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTD
                     LEGDMPKAPRKNRNLITLY"
     gene            complement(2362..2682)
                     /locus_tag="PF788_002469"
     CDS             complement(2362..2682)
                     /locus_tag="PF788_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDG6304710.1"
                     /translation="MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVE
                     QYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLA
                     ETFK"
     gene            2826..3182
                     /locus_tag="PF788_002470"
     CDS             2826..3182
                     /locus_tag="PF788_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HDG6304711.1"
                     /translation="MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKT
                     IIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDK
                     ITLGFKEDQYKETWLA"
     gene            3340..3720
                     /gene="gcvH"
                     /locus_tag="PF788_002471"
     CDS             3340..3720
                     /gene="gcvH"
                     /locus_tag="PF788_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HDG6304712.1"
                     /translation="MAVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELP
                     ETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVK
                     VEISDESQIEALLTAEKYSEMIGE"
     gene            3899..4777
                     /locus_tag="PF788_002472"
     CDS             3899..4777
                     /locus_tag="PF788_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1963 domain-containing protein"
                     /protein_id="HDG6304713.1"
                     /translation="MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQ
                     EETLNQSKIGGMPFLKYFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFW
                     ISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAF
                     SIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEP
                     FNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTD
                     LEAMKFDDYMYSWDCS"
BASE COUNT         1777 a          691 c          900 g         1628 t
ORIGIN      
        1 tttatatgca cattcttgta aatggattat caatttaatt atatttattt ttaagttcag
       61 gaaattatgg aattggttat tggtcgacac tggactttta tttgtagacg gtatgcgaag
      121 aagtcaagcc agtattggaa ccggtcacat ttatgatgac taaggtacaa tcattttcag
      181 ttaaatattg ccagaaattt caatcacgaa tagaaaaaat aaccaaccaa aaatttttgg
      241 ttggcaaatt tgaattttat gtgaatttta ttaataacgt tgaataatct ctttaagtta
      301 atgctaatct acaacattta catttaaatc gacattaata tttccttgag tcgcttttga
      361 atatggacaa aattcatgag ccatttgtaa atatttttca gcttcttctt gagatataac
      421 atttttaatt gtcgcatcaa ttgaaacact taatttagga ctttctgagt ctgaatcatc
      481 ttctagtctc actgttagtg ttacttctgg atgagcatca cgcactttgt tttgctttaa
      541 aattaggtcg aaagcaccgt tgaagcaaga tgcataacct gctgcaaata attgttcggg
      601 gttagtagct ttaccatctg cttgagcagg cggaacgata tcaatatcta atgctcgatc
      661 atcagtataa acatgtcctt tacgtccgcc aacattcgtc gctttagttt cataatgtat
      721 tgccatactt ataacctcct aatttaaaat acatttatgc tttacccatt cgaaaatacc
      781 ttaatcattt tcatttatag cattgtttga ttgaaggata aaaagttgtt gtttacaata
      841 aaaataatga gtatctgaaa tgagggattc actatgacac atgtggaagt agtagcgact
      901 atcgcgccac aattatctat cgaagaaact ttaattcaaa aaattaatca tcgtattgat
      961 gcaatagacg tattagaatt acgaattgat caaattgaaa atgtcacagt tgatcaagtg
     1021 gcagaaatga ttacaaagct gaaggttatg caagattcat tcaaattatt agttacgtat
     1081 cgtacaaagt tacaaggtgg ctatgggcaa tttacaaatg actcgtatct taatttaata
     1141 tcagacttag caaatatcaa tggcatagat atgattgata tagaatggca agcagatatt
     1201 gacattgaaa aacatcaacg aatcattaca catttgcaac agtataataa agaggtggtt
     1261 atatcacatc ataatttcga aagtacgcct ccattagatg aattgcaatt tatatttttt
     1321 aaaatgcaaa aattcaaccc agaatacgtt aaattagcag taatgccaca taataaaaat
     1381 gatgtgttaa atttattgca ggcaatgtct acattttcag atactatgga ctgcaaagtt
     1441 gttggtattt caatgtctaa acttggacta ataagtagaa cggctcaagg cgtttttggt
     1501 ggtgcgttga cttatggttg tatcggagta ccacaagctc caggacagat tgatgttact
     1561 gatttaaaag cacaagtgac tttatactaa taaaatgaat taggttgctt ttgtgtaagt
     1621 gctgtcttat aattgagaag tattatcatt gttcgtggag gagcgatttt agatggaatt
     1681 acaacaagca atagctaata gaagaagtgt gaaaaaattt aaaagagata tgcacataga
     1741 tgacgcattg ctatatcaag caattgagaa agctgctgat gctccaaatc acggaatgag
     1801 ggaaccatgg agagttgtgc atgttccgaa agacagatta ggagatatga gtaaggatat
     1861 ttctaaattt gcatttccta atgaattaga taagcaacaa tgtcattatg atgcagttac
     1921 gaaactaggt ggcatgttat tgcttatttt aaaaacagat ccaagacaac gtcaaaatga
     1981 tgaaaactac tttgcatttg gtgcatatgc acaaaatctt atgttgttac tttatgaagc
     2041 gggaataggt acatgttgga aatcgccatt atatatctat gatcctaaag taagaaaaac
     2101 acttggtata aagaaagatg aagttcttgc tggattctta tatttaacgg atttagaagg
     2161 agatatgcct aaagcaccac gtaaaaatag aaacttaatt acattatatt aatatgtata
     2221 attatagaaa cattaataaa agctgagtca tgaattgatg gacatctatc gagttagaga
     2281 tttaatctaa cttactagag tcggtacaat aacagtctca gctttttatt gtgcagtata
     2341 tacacatttt tattttagta tttatttaaa agtttctgct aaaaatgatt caacttgttc
     2401 aggtgactta gcatttgctg aatgaaggtg tgcaatttta tcgccgtttt taaatactag
     2461 caagctaggg atacccataa cttcattttc aacaactaca tcttctaatt catcacgatt
     2521 aacagtatac cattggtaat cattatattg ttctacgatt gggtcaatcc ataaatccat
     2581 agcacgacag tctgggcacc atcctgcctc aaatttaaca attacaggtg tatcgctatt
     2641 aattacagat ttaaatgatt cattactttt gattgattgc attgtaacaa ctcctctaga
     2701 tagtttaata atttttatta tagctaaatt tatatcataa taaaaaattt tagcttcaaa
     2761 atgaaagcct tttgctttgg aaaatgatat atttatttta aatacataaa ggaggttgca
     2821 gtcgtatgat taaattttac caatataaga attgtacaac ttgtaaaaag gcagcaaagt
     2881 ttttagatga atatggcgta agttatgaac caattgatat cgttcaacat acacctacaa
     2941 taaatgaatt taaaacaata attgcaaata caggcgtaga aattaataaa ttgtttaata
     3001 cacacggcgc gaaatatcgt gagcttgatt tgaaaaataa attacaaact ttatcagatg
     3061 atgaaaagtt agagttgtta tcatctgatg gtatgttagt aaagcgtcct ctagcagtaa
     3121 tgggcgataa gataacatta ggatttaaag aagatcaata taaagagact tggttagcgt
     3181 aagtgaaatg taagcgttta ctaaatatct cgatatttag attcattaca tgtaaaatga
     3241 aataagctat acaattgtta atttttataa atatagttga atagcatcta gccttatggc
     3301 atcattaatg atgtaaagat taattaggag gggattctct tggcagtacc aaatgaattg
     3361 aaatattcaa aagagcatga atgggttaaa gttgaaggta atgtagcaat aattggaatc
     3421 acagaatacg cacaaagcga gttaggtgat attgttttcg ttgaattacc agaaacagat
     3481 gatgaaatta atgaagggga tacgtttggt agcgtagaat cagttaaaac tgtatcagaa
     3541 ttatatgcac caatctctgg taaagtagtt gaagtcaacg aagaactaga agatagtccc
     3601 gaatttgtaa atgaatctcc atacgaaaaa gcatggatgg taaaagtaga aattagtgat
     3661 gaaagtcaga ttgaagcttt attaacagct gaaaaatatt cagaaatgat tggtgaataa
     3721 tcaccgtgta actccttaat ctaagattga ggagtttatt tttagtctga gaaaataaat
     3781 gatatgaaag aaaaattatt aggtactatt atttggagta ttgctacatt ttattattca
     3841 agaatgatgg aaataatgaa tttagctatt ttaaaaataa aaattggggg aagttaatat
     3901 gctaaacatt caagacgtta gtcatctttc taaaaaggag caaaaagcat ataaccgttt
     3961 cgtagaatct gtagaaaacg gtaatttacc agtactacca tgtattgaaa tggatctaaa
     4021 agagatgcaa gaagaaacat taaaccagag taagattggt ggaatgccat ttttaaaata
     4081 ttttaaagat ataccattag atgaaaataa tgtaccaatg gtattgctag cacagattaa
     4141 tttggatgat cttccagaac aacaagaatt atttcctgta aaagaaggga tattgcagtt
     4201 ttggattagt tcagaagatc aaatgtatgg aatgtctgaa aatttaaagg gaaacaatat
     4261 aaactcaagg cttgtttata taaaagagcc aattacagat ttatcactcg aaaatattca
     4321 agcgcatttg aagtcattag atgctgataa tgaggatatc ccgttcagtg gagcattttc
     4381 tatagaattt agattgtcga aacaaactat tacatgtact gattataagt acgatgagga
     4441 cgtgcttgca ttgtggaata aagtcaatcc atccttcgcg ctaaaatcaa tgtttggtgg
     4501 ttatgatgaa ttgatggaac ctgtgtgtaa cacatttact gctaaggaac catttaatca
     4561 acttggtggt tatccatatt ttgaccaaat agatccaaga acgaacgatc aagaactgaa
     4621 aatgtatgat agagtcttac tgcaaattga ttctacaaga gatggtaatt cttcgattat
     4681 atggggtgat ttaggtattg ccaatatctt agtgaaatct actgaccttg aggctatgaa
     4741 gtttgatgat tacatgtatt catgggattg cagctaagag aatcataaaa atatattact
     4801 ttaataagtg tagtatctat agatcaatct agggagtggg acataaatga tattttcgca
     4861 aaatttattt cgtcgtccca ccccaacttg cattgtctgt agaaattggg aatccaattt
     4921 ctctttgttg gggcccatcc ccaacttgca ttgcctgtag aatttctttt cgaaattctc
     4981 tgtgttgggg cccctg
//
LOCUS       DAMQWL010000151         4935 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.155, whole genome shotgun sequence.
ACCESSION   DAMQWL010000151 DAMQWL010000000
VERSION     DAMQWL010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4935
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.155"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(521..967)
                     /gene="perR"
                     /locus_tag="PF788_002473"
     CDS             complement(521..967)
                     /gene="perR"
                     /locus_tag="PF788_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HDG6304714.1"
                     /translation="MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHP
                     TADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIIC
                     EQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK"
     gene            complement(1064..2014)
                     /locus_tag="PF788_002474"
     CDS             complement(1064..2014)
                     /locus_tag="PF788_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDG6304715.1"
                     /translation="MKVVGLNRMREVETELQQRFSDLDFKFYKKASEIPESDLADLDI
                     LVGYDGGINEAFLRRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEY
                     ILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFN
                     MNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIIINALPETQETIHLLKKKHFELMK
                     DEALFINIGRGSIVKEALLIEVLKSKVIRHAYLDVFENEPLKPNHELYELDNVTITAH
                     ITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDAKKGY"
     gene            complement(2020..2475)
                     /gene="bcp"
                     /locus_tag="PF788_002475"
     CDS             complement(2020..2475)
                     /gene="bcp"
                     /locus_tag="PF788_002475"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDG6304716.1"
                     /translation="MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIIYFYPRDNTPTC
                     TTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETG
                     VYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG"
     gene            2556..3845
                     /locus_tag="PF788_002476"
     CDS             2556..3845
                     /locus_tag="PF788_002476"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500497.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDG6304717.1"
                     /translation="MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHG
                     AYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKL
                     RDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGP
                     SQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMP
                     QPGFLEEVNEISHNNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPI
                     GGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQL
                     EEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQG
                     INLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK"
     gene            4138..>4935
                     /locus_tag="PF788_002477"
     CDS             4138..>4935
                     /locus_tag="PF788_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HDG6304718.1"
                     /translation="MRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQP
                     SIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVAT
                     LASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNI
                     SSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNR
                     KKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLT"
BASE COUNT         1610 a          782 c          718 g         1825 t
ORIGIN      
        1 attttattat gtatttgttc gaatttcaat agtcaaattt acactttatt aatattttaa
       61 atcaacaact taaaacattt gttttttaaa tattagtgcc gtttgacgac ttttatataa
      121 tatcaagtta ttctagtaga gtcaacataa aacaacactt atttttgttt aaaaattact
      181 gttgaaggga ttattttcta ttcgtaagta ctatatgtat ttaaagtgta attccttatg
      241 ctttttactt cagttttaca aacaaactta tactcacttt atggatagtt atttagtaga
      301 ccttcgtttg aatattttta tgtttattta taaaggatac tagttattag ttaataccac
      361 ttccgtagtt agaatattct tttcttcaat ttaaatattt ttcagaataa gcataaaaaa
      421 aagttaaaca actttcatgt cgtttaactt cttaaatatt acgcttactt atatgaagta
      481 agctaacgct tttttaattt gtcatactac caaagttaaa ttatttatct tggcattctt
      541 tacaaactcc ataaatttcc attcgatgat gtgttacgtc aaagtcagtc atatgctgag
      601 ctaatctttc aatttcattt aactgtggat attgaaaatc aacaatctta ccacattgtt
      661 cacatataat atgataatga ttatgtgtat taaagtcgaa tcgacttgat gagtctccat
      721 atgttaattc ttttacaatt ccaatatctt taaacactct taagttatta tatattgtcg
      781 caacacttat atttggaaaa tcaggtgaaa gtgcttgata aatttcatca gctgttggat
      841 gagtatgtga agaaattaaa taacgtaata ttgcttgtct ttgaggtgta attcttacgc
      901 ctgcttgtcg caatgatgca attgattctt ctagttcatg ttcaattgat tctatttcaa
      961 cactcatcta tatcaccatc tttcttatat aataattatt attacttact ataaatataa
     1021 ctgtagtatt gcgcgcgtgt caatatttac atgatgattt catttaatag ccttttttag
     1081 catcaacttc attctcaatt agaccattct tattgagaaa attaactaga ttgtttttaa
     1141 aaatatctaa taagtcatac tttgcttcat aatcattacc agttatatgc gctgttatag
     1201 ttacattatc caattcatat aattcatgat taggtttcaa aggttcattt tcaaacacat
     1261 ctaaatatgc atgtcgaata actttacttt ttaatacttc tattaagagc gcttctttaa
     1321 ctatgctacc tcgtcctata tttataaaaa gtgcttcatc tttcattaat tcaaaatgtt
     1381 ttttctttag taaatgaatc gtttcttgcg tttctggtaa agcatttata ataatgtcag
     1441 catttggtaa tgtgctttca agtgattcga tagtatatat ctcgtcaaac tcatctttgt
     1501 tctgacctga cttgctcaga ccaattaaat tcatattaaa agcctttgct aacttcgcag
     1561 ttctagtagc aattgcacct gtacctaaaa ataaaactgt ttgtcctgat aggcgtttac
     1621 cagttatttt cgaatcatat atatgttgtc gttggttatc atatgatagt ttcatctttt
     1681 tataatcatc taaaatgaaa gctaaaatgt attcagataa ttgtttagct tgaacacctt
     1741 ttccattagt taaaagtatg ccgtgatctg caatataatc taacggcaat gtatttacac
     1801 ccgttgcaaa ccatgcaatc cattttaaat tcgggcaacg tcgtaaaaat gcctcattga
     1861 taccgccatc ataaccaact aatatatcta aatcagccaa gtcgctctca ggtatttctg
     1921 atgctttttt ataaaattta aaatctaaat ctgaaaagcg ttgttgtaat tcagtttcaa
     1981 cttcacgcat acgatttaac ccaacaactt tcatatatgt caccccaaaa tgtttttaag
     2041 ttcttctatt tgtgttttaa ccttaacctt ctcgataaca tctaatactt taccttgttc
     2101 atctattata aaagtcgttc ttacaatgcc catactttct ttgccaaatg atttttttaa
     2161 ctgatatacg ccagtttctt tagctaattt aaaatcttca tctactaata aatcgaaatt
     2221 caatccgtgt ttctcaataa aattttggtg ttttttcttt gaatcaccgc ttataccata
     2281 tactgcaaca tctaaatcat tgaacatttc taaattgtct ctaaagtcac aagcttctgt
     2341 ggtacaagta ggtgtattat ctctaggata aaaatatata atcgcctttt taccttttaa
     2401 tgtatcattt gtaatgacag ttccgtcttg attttctaat ttaaatattg gaaattgttc
     2461 tcctttttgc aacatataat cacctttttc ttcattataa taattttatg atacgatatt
     2521 agatgaaaat attaaattaa aagaggttga tataaatgaa ttttagtgaa agtgaacgtt
     2581 tacaacaact ttcaaacgaa tatattctag gcggtgtcaa ttccccttct cgttcttata
     2641 aagctgtagg aggcggtgca cctgttgtta tgaaagaagg acacggtgca tatttatatg
     2701 atgtcgatgg caataaattt attgattacc ttcaagcata cggtccaatt attacggggc
     2761 atgcacatcc tcatattact aaagcaattc aagaacaagc tgctaaaggt gttttatttg
     2821 gtacaccgac tgaattagaa attgaattca gcaaaaaatt acgtgatgca attccatctc
     2881 ttgagaaaat tcgctttgta aattctggaa cagaagcagt catgacaaca attcgtgttg
     2941 cacgtgcata tactaaaaga aataaaatta taaaatttgc tggatcttat catggccatt
     3001 ctgatttagt attggttgca gcaggtagcg gcccatctca gctcggttct ccagactcag
     3061 ctggtgttcc agaaagcgtc gcacgtgaag tcattactgt acctttcaat gatattaacg
     3121 cctataaaga agcaattgaa ttttggggtg atgaaattgc cgcagtatta gtagaaccaa
     3181 ttgttggtaa ctttggaatg gtaatgcctc aacctggatt tttagaagag gttaatgaaa
     3241 tttcacataa caatgggacc ctagtgattt atgatgaagt aattactgca ttccgtttcc
     3301 attacggtgc cgctcaagat ttattaggtg ttatccctga tttaactgca tttggtaaaa
     3361 ttgttggcgg tggtttacca attggaggct atggtggacg tcaagatatt atggaacaag
     3421 tagcacctct aggacctgca tatcaagctg gtacaatggc tggtaacccg ttatctatga
     3481 aagcaggtat tgcattactc gaagtactag aacaagacgg tgtttatgaa aaattagaca
     3541 gcttaggcca acaactagaa gaaggtttac ttaaattaat cgaaaaacat aatatcacag
     3601 ctacaattaa tcgtatttat ggatctttaa cattgtactt tacagatgaa aaagtcacac
     3661 attatgatca agttgaacat tctgacggcg aagcgttcgg taaatttttc aaattaatgt
     3721 taaatcaagg tatcaattta gcaccttcta agtttgaagc ttggttctta acaactgaac
     3781 atacagaaga agatattaaa caaactttaa aagctgcaga ctatgctttt agtcaaatga
     3841 aataactttt aaggaagtat atttttaatt gaattaaaat aaagcaaatg ctcacatagt
     3901 agattcattt tatatcgtta actattaacg tttaacttga tatgtcacta tgtgagtttt
     3961 tattttacaa atttatacta ttttaatctc taactaaagt tttacatcgc tatcagtatt
     4021 atgtatgatt tattttaaca actataaata agcttgaatt ttgtaactag taagtgtata
     4081 acagtaatga atacgaatat tagatattca ataaacttaa aaggggcgtc attatttttg
     4141 agactaggag ctcggatttt taaaactggt atagccatta ttttagctat gtctatcgct
     4201 tctttactac cggatgatgt tggtctgaaa gccttagctg gtgtcagtgc tgttgttgca
     4261 atgcaaccta gtatttatcg ttcatttaaa acagtttctg atcaagcatt gggtaacatt
     4321 ataggtgcca tactatctgt tacaatggta acaattttta gtgataattt tatcattatg
     4381 ggtgttaccg tcatagtact tattgctatt ttatttaaat ttaatttagc acatgttgct
     4441 actttggcga gtgtaacagc attaatcatt atgggacaac ataccggttc tttctatatt
     4501 accgcctttt acaggtttgt acttgtaatg attggtgtca taagttcatc tctagttaac
     4561 tttgtgtttc taccacctaa atttgaaaca aaaatttact ataattcatt aaatatatcc
     4621 tcagatattt ttatgtggtt taaattagta ttaaatgata cgacggagtt taataatatt
     4681 aaacaagata gtcataattt aaaacaacgt gtcgaaaagt tagagaaaat ttatgattac
     4741 tatagcgaag aacgtcctat tacaaaaaaa catattcacc aacagaatag aaagaaaata
     4801 cttttcagag aagtagttca gacgactaga caagcttatg aagtattaaa caaattgtcg
     4861 cgttatcaaa acgacttata tttacttaat aacaatttcc tattacaaat caaattagat
     4921 ttagattcat taact
//
LOCUS       DAMQWL010000152         4866 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.156, whole genome shotgun sequence.
ACCESSION   DAMQWL010000152 DAMQWL010000000
VERSION     DAMQWL010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4866
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.156"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            48..1328
                     /locus_tag="PF788_002478"
     CDS             48..1328
                     /locus_tag="PF788_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HDG6304719.1"
                     /translation="MKKLNIALLGLGTVGSGVVKIIEENRQQIQDTLNKDIVIKHILV
                     RDKSKKRPLNISQYHLTEDVNEILNDDSLDIIVEVMGGIEPTVDWLRTALKNKKHVIT
                     ANKDLLAVHLKLLEDLAEENGVALKFEASVAGGIPIVNAINNGLNANNISKFMGILNG
                     TSNFILSKMTKEQTTFEEALDEAKRLGFAEADPTDDVEGVDAARKVVITSYLSFNQVI
                     KLNDVKRRGISGVTLTDINVADQLGYKIKLIGKGIYENGKVNASVEPTLIDKKHQLAA
                     VEDEYNAIYVIGDAVGDTMFYGKGAGSLATGSAVVSDLLNVALFFESDLHTLPPHFEL
                     KTDKTREMMDSDAEINIKEKSNFFVVVNHVKGSIENFENELKAILPFHRSLRVANYDN
                     QSYAAVIVGLESSPEELITKHGYEVDKVYPVEGV"
     gene            1334..2395
                     /locus_tag="PF788_002479"
     CDS             1334..2395
                     /locus_tag="PF788_002479"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDG6304720.1"
                     /translation="MRRWQGLVEEFKAHLPVNENTPKLTLNEGNTPLIHCENMSKILG
                     IDLYVKYEGANPTGSFKDRGMVMAVTKAKEQGKKIVICASTGNTSASAAAYAARAGLK
                     AIVVIPEGKIALGKLSQAVMYGAEIVSIEGNFDEALEIVKEIAKSGEIELVNSVNPFR
                     IEGQKTGSFEIVQQLDGEAPDILAIPVGNAGNITAYWKGFKEYHEAKGSQLPKMFGFQ
                     AEGASPIVQNKVIKNPETIATAIRIGNPASWDKATNALKESNGLIDSVTDDEILEAYQ
                     LMTTKEGVFSEPASNASIAGLIKLHRQGKLPQGKKVVAILTGNGLKDPDTAISLLDNP
                     IKPLPNDKDSIIDYIKGAL"
     gene            2397..3311
                     /locus_tag="PF788_002480"
     CDS             2397..3311
                     /locus_tag="PF788_002480"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDG6304721.1"
                     /translation="MSNVLELTIPASTANLGVGFDSIGMALDKFLHLSVKETSGTKWE
                     YIFHDDASKQLPTDETNFIYHVAQQVASKYSVDLPNLCIEMRSDIPLARGLGSSASAL
                     VGAIYIANYFGDIQLSKHEVLQLATEIEGHPDNVAPTIYGGLIAGYYNDVSKETSVAH
                     IDIPDVDVIVTIPTYELKTEASRRALPQKLTHSEAVKSSAISNTMICALAQHNYELAG
                     KLMQQDGFHEPYRQHLIAEFDEVKTIASQHNAYATVISGAGPTILIFSRKENSGELVR
                     SLNSQVVSCHSELVDINISGVKERIVYQ"
     gene            3369..4172
                     /locus_tag="PF788_002481"
     CDS             3369..4172
                     /locus_tag="PF788_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDG6304722.1"
                     /translation="MTNYKVVVLDMDDTLLNSDNVISEETANYLTAIQDEGYYVVLAS
                     GRPTEGMIPTARDLKLPEHHSYIISYNGSKTINMTNEEVEVSKSIGKQDFDEIVDYCR
                     DRGFFVLTYHDGQIIYDSEHEYMNIEAELTGLPMKRVDDIKAYIQGDVPKVMGVDYVA
                     NITEARIDLNGVFNDNVDATTSKPFFLEFMAKDVSKGNAIKALCHKLGYSVDQVIAFG
                     DSMNDKSMFEVAGLAIAMGNASDELKQYANEVTLDHNENGIPHALKKLL"
     gene            complement(4465..4779)
                     /locus_tag="PF788_002482"
     CDS             complement(4465..4779)
                     /locus_tag="PF788_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304723.1"
                     /translation="MIGQTNLFDDVLKQDERFVIVVQALEEKNGQLLKRTLREYPGLN
                     HKQMNDLFMHLKELFSEESFAENQSAFSITVYTNLDYTADQIYAHVKRFRGKHDWTQT
                     AK"
     gene            complement(4754..4858)
                     /locus_tag="PF788_002483"
     CDS             complement(4754..4858)
                     /locus_tag="PF788_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304724.1"
                     /translation="MLPFFILDILHIVYNIDNNNFSGVKFNDWTNKFI"
BASE COUNT         1756 a          664 c          946 g         1500 t
ORIGIN      
        1 caataataca tttgtttttc tcaaaagcac aaacggaggt acataaaatg aaaaaattaa
       61 atatagcatt attaggatta ggtactgtcg gatctggtgt tgttaaaatc atcgaagaga
      121 accgacagca aattcaagat acattaaata aagatattgt cataaagcat attcttgttc
      181 gagataaatc taaaaagaga ccgctaaata ttagccaata tcatttaact gaagatgtta
      241 atgaaatttt aaatgatgat tcattagata ttatcgttga agtcatggga ggaattgaac
      301 caactgtaga ttggttaaga acagcactta aaaataaaaa acatgttatt accgcaaata
      361 aagatttatt agcagtacat cttaaacttt tagaagattt agcagaagaa aatggtgtag
      421 ctttaaagtt tgaagcgagt gtagcaggtg gtattccgat cgtaaatgcc ataaataatg
      481 gtttgaatgc gaataatatt tcaaaattta tgggaatttt aaatggtacc tctaatttta
      541 ttttatctaa aatgactaaa gagcaaacga catttgagga agcacttgat gaagcgaaaa
      601 gacttggttt tgctgaagcg gatccaactg atgatgtaga aggggtagat gcagcgcgta
      661 aagttgtcat tacatcatat ttatcattta accaagtcat taaattaaac gacgttaaac
      721 gaagaggaat tagtggcgta actttaactg atattaatgt agccgatcaa ctggggtata
      781 aaattaaatt gattggtaag ggaatatatg aaaatggcaa agttaatgca tcggtagaac
      841 caacgttaat tgataaaaag catcaattag cagctgtaga ggatgaatat aacgcgattt
      901 atgttattgg tgatgccgtt ggtgacacga tgttttatgg aaaaggagca ggcagtttag
      961 caacaggtag tgccgttgtc agtgatttat tgaatgtagc attattcttt gaatcagatt
     1021 tacacacatt gccaccacat tttgaattaa agacagataa aacacgggaa atgatggatt
     1081 cagatgcaga aattaatatt aaagaaaaat ccaatttctt tgtagtagtg aatcatgtca
     1141 aaggttcaat tgaaaatttt gaaaatgagt taaaggcaat attaccattt caccgatcat
     1201 taagagttgc aaattacgat aatcaatcat atgccgctgt tatagttgga ttggaatcat
     1261 caccggaaga attaatcact aagcatggat acgaagttga caaagtatac ccagtagaag
     1321 gagtttaatt ataatgagaa gatggcaagg attagtagaa gagtttaaag cacatttacc
     1381 agtaaatgaa aatacaccaa aattaacatt gaacgaggga aatacaccac tcattcattg
     1441 tgaaaatatg tctaaaatac taggcataga tttatatgtg aagtatgaag gtgccaatcc
     1501 gacaggttca tttaaagatc gcggtatggt aatggctgtg acaaaagcaa aagagcaagg
     1561 taagaaaatt gtaatatgcg cttcgactgg aaatacatca gcgtctgcag cagcatatgc
     1621 agcgagagca ggtttaaaag ctatcgtcgt aataccagaa ggtaaaattg cattaggtaa
     1681 attgtcgcaa gcagtaatgt atggtgcaga aatcgtttct attgaaggaa actttgatga
     1741 agctttagaa attgtaaaag aaattgcaaa aagtggcgaa atcgagcttg taaactctgt
     1801 caatccattt agaatcgaag gacaaaagac aggctcattt gaaattgtac aacaattaga
     1861 cggtgaagca cctgatattt tagcgattcc tgtaggtaat gcaggtaata ttactgcata
     1921 ttggaaaggc tttaaagaat atcatgaagc taaaggatca caattgccga aaatgtttgg
     1981 cttccaagct gaaggcgcat caccaattgt tcaaaataaa gtcattaaaa atcctgaaac
     2041 gattgcaact gctattcgaa ttggtaatcc tgctagttgg gataaggcga ctaatgctct
     2101 taaagaatca aatggattaa tagatagtgt tactgatgat gaaattctag aagcatatca
     2161 gttaatgaca actaaagaag gtgtctttag tgaaccagcg agtaatgctt ctattgcagg
     2221 tttaattaaa ttgcatagac aaggtaaatt acctcaaggt aaaaaagtag ttgctatttt
     2281 aactggtaat ggattaaaag atcctgatac tgctatttca ctactagata atccgataaa
     2341 gccattgcca aatgataaag atagcattat cgattatatt aaaggagctt tataacatgt
     2401 cgaatgtttt ggagttaaca attcctgcat caacagccaa ccttggagtt ggctttgatt
     2461 ctataggtat ggctttagat aaatttttgc atctgtctgt aaaggaaaca tcagggacaa
     2521 aatgggaata tattttccat gatgatgcat ctaagcaatt gcctactgac gaaacaaact
     2581 ttatttatca tgtagcacaa caagttgctt ctaaatatag tgttgacttg cctaatttat
     2641 gtatcgaaat gagaagtgat attccattgg caagagggtt aggttcgtca gcttctgctt
     2701 tagtaggagc tatatatatc gcaaattatt ttggtgatat ccaactgtct aaacatgagg
     2761 tattacaatt agcgactgaa atcgaaggac atcctgataa tgttgcgccg accatttatg
     2821 gtggtttaat cgctggatat tataatgatg tctcgaaaga aacgtcagtt gcacatatcg
     2881 acataccaga cgtggatgtg attgtaacga taccaactta tgaactaaaa acagaagcat
     2941 caagacgtgc tttaccacaa aaattaacac atagtgaagc ggttaaaagt agtgcaatta
     3001 gtaatacaat gatttgtgca ttagcacagc acaattatga attagcaggt aaactcatgc
     3061 aacaagatgg ctttcatgaa ccgtatcgtc agcatttaat tgctgaattt gatgaagtga
     3121 aaacaattgc tagtcaacat aatgcctatg caactgtaat tagtggtgct ggaccaacta
     3181 ttttaatatt tagtcgtaaa gaaaatagtg gggaattggt tcgctcttta aatagtcagg
     3241 tagtatcatg ccattctgaa ttggtcgata ttaatatcag tggtgttaaa gaacgaattg
     3301 tataccaata gacgctttat attgtaaaat agtattaaat gcagaataga gaggagattt
     3361 aatgcgatat gacaaattat aaagttgtcg ttttagatat ggatgacaca ttgctaaatt
     3421 cagataatgt gatatcagaa gaaactgcaa attatttaac agcaattcaa gatgaaggtt
     3481 attatgttgt tctagcatct ggtagaccta ctgaaggtat gattccaact gctagagatt
     3541 taaaattacc tgaacatcat agctatatta ttagttataa cggtagtaaa acgattaaca
     3601 tgactaatga agaagtagaa gtaagtaaat cgattggtaa gcaagatttc gatgaaattg
     3661 tagattattg tcgagataga ggctttttcg ttcttacata tcatgatggt caaattattt
     3721 acgacagcga acatgagtat atgaatattg aagcagaatt aacaggttta ccgatgaaac
     3781 gtgttgatga tatcaaagcg tatattcaag gcgatgtacc caaggtcatg ggtgtagatt
     3841 atgtagcgaa tattacagaa gctagaattg atttgaatgg tgtgttcaat gataatgtag
     3901 atgctacgac aagtaagcca ttcttcttag aatttatggc caaagacgtt tcaaaaggta
     3961 atgcaattaa agcgttatgt cacaaattgg gatattcggt ggatcaagtc attgcttttg
     4021 gtgatagtat gaatgataaa tcaatgtttg aagtcgcagg tctagctatt gctatgggga
     4081 atgcatcaga tgaacttaag caatatgcaa atgaagttac gttggatcat aatgaaaatg
     4141 gtattccaca tgcgctcaaa aaattgttat aaattttaaa ataagcctta acacatgata
     4201 tttgaataag atatcttgtg gttaaggctt tttatttttg tgaaaatgac ttcagttata
     4261 ctatggagga tttgaaatac atattttaga ttagtaatga tatcaaacga atagagtaaa
     4321 tgtatatttt ttgaataaat caagtattaa ctagtcacgg aaggtagata aataaatttg
     4381 atcattctga ataataacga atgcattaaa aaatgcagtg acaatctaac attaattgtt
     4441 aaaatcactg caagcatctt gattttattt agctgtttgt gtccagtcat gcttacctct
     4501 gaaacgtttt acatgagcat atatttggtc agcagtataa tctaaatttg tataaactgt
     4561 aatactgaac gctgattggt tttcagcaaa tgattcttcg gaaaataatt cctttaagtg
     4621 cataaataaa tcattcattt gtttatggtt taaaccggga tattccctta aagttctctt
     4681 taataattgt ccgttctttt cttctaatgc ttgaactaca ataacaaatc tttcatcttg
     4741 ctttagtaca tcatcaaata aatttgtttg tccaatcatt gaatttcacc cctgaaaagt
     4801 tattgttatc tatattatac acgatatgca aaatatctaa aataaagaat ggtaacatgg
     4861 taataa
//
LOCUS       DAMQWL010000153         4808 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.157, whole genome shotgun sequence.
ACCESSION   DAMQWL010000153 DAMQWL010000000
VERSION     DAMQWL010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4808
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.157"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            40..366
                     /locus_tag="PF788_002484"
     CDS             40..366
                     /locus_tag="PF788_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019468012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor antagonist"
                     /protein_id="HDG6304725.1"
                     /translation="MNLNIETTTQDKFYEVKVGGELDVYTVPELEEVLTPMRQDGTRD
                     IYVNLENVSYMDSTGLGLFVGTLKALNQNDKELYILGVSDRIGRLFEITGLKDLMHVN
                     EGTEVE"
     gene            368..847
                     /gene="rsbW"
                     /locus_tag="PF788_002485"
     CDS             368..847
                     /gene="rsbW"
                     /locus_tag="PF788_002485"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001190828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma B factor RsbW"
                     /protein_id="HDG6304726.1"
                     /translation="MQSKEDFIEMRVPASAEYVSLIRLTLSGVFSRAGATYDDIEDAK
                     IAVSEAVTNAVKHAYKENNNVGIINIYFEILEDKIKIVISDKGDSFDYETTKSKIGPY
                     DKDENIDFLREGGLGLFLIESLMDEVTVYKESGVTISMTKYIKKEQVRNNGERVEIS"
     gene            822..1592
                     /gene="sigB"
                     /locus_tag="PF788_002486"
     CDS             822..1592
                     /gene="sigB"
                     /locus_tag="PF788_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigB"
                     /protein_id="HDG6304727.1"
                     /translation="MAKESKSANEISPEQINQWIKEHQENKNTDAQDKLVKHYQKLIE
                     SLAYKYSKGQSHHEDLVQVGMVGLIGAINRFDMSFERKFEAFLVPTVIGEIKRYLRDK
                     TWSVHVPRRIKEIGPRIKKVSDELTAELERSPSISEIADRLEVSEEEVLEAMEMGQSY
                     NALSVDHSIEADKDGSTVTLLDIMGQQDDHYDLTEKRMILEKILPILSDREREIIQCT
                     FIEGLSQKETGERIGLSQMHVSRLQRTAIKKLQEAAHQ"
     gene            2026..4176
                     /locus_tag="PF788_002487"
     CDS             2026..4176
                     /locus_tag="PF788_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDG6304728.1"
                     /translation="MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQT
                     GGLDEVQIKQIDDEYQYMVNLQKRKEEVIKNIEQQGLLTEELKKDILKQNKLQRVEDL
                     YRPFKQKKKTRATEAKRKGLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGA
                     QDIIAEQISDNPKYRTKILKDMYHQGVLTTSKKKNAEDEKGIFEMYYAYSEPIKRIAN
                     HRVLAVNRGEKEKVLSVKFEFDTTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIV
                     PSIEREIHADLTEKAENHAIDVFSENLRNLLLQPPMKGKQILGVDPAFRTGCKLAVIN
                     PFGTFIAKGVIYPHPPVSKKEAAEKDFVQMVKAYDVQLIAIGNGTASRETEQFVADLI
                     KKHQLPVQFIIVNEAGASVYSASEIARDEFPDFQVEERSAVSIGRRVQDPLSELVKID
                     PKSIGVGQYQHDVNQKALENALTFVVETAVNQVGVDVNTASSSLLQYVSGLSSQIAKN
                     IIAYREENGAIKHNKELSKIKRLGAKTFEQSIGFLRIVDGSEPLDNTSIHPESYKVTY
                     QLLDKLGFGGNDLGSDALKAKLNSLDMDELAIELQVGVPTLEDIIKSLKAPNRDPRDE
                     FETPILKSDVLSIEDLQEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKN
                     PMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE"
     gene            4169..4624
                     /locus_tag="PF788_002488"
     CDS             4169..4624
                     /locus_tag="PF788_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HDG6304729.1"
                     /translation="MNNDKLQRMVENLSEEKFGRTFRHCAYFNKRLRTTGGRYLLKSH
                     DIEINPKQYEHYGEDAVVKIILHELCHYHLHIAGKGYQHKDQDFKRLSQQVGAPRFCN
                     SIESYQQRANYEYYCTKCHAKYIRIRKVDTNRMRCGHCNGKLRMKRQLK"
BASE COUNT         1830 a          604 c          946 g         1428 t
ORIGIN      
        1 atgaagataa atatttttaa taagtaggag tgtaatgaaa tgaatcttaa tatagaaaca
       61 accactcaag ataaatttta cgaagttaaa gtcggtggag aattagatgt ttatactgtg
      121 cctgaattag aagaggtttt aacacctatg agacaagatg gaactcgtga tatttatgtt
      181 aatttagaaa atgtgagtta tatggattcg acaggtttag gtttattcgt aggtacatta
      241 aaagcattaa accaaaatga taaagaacta tacattttag gtgtgtcaga tcgtatcggt
      301 agactatttg aaattactgg tcttaaggat ttaatgcatg ttaatgaagg aacggaggtc
      361 gaataacatg caatctaaag aagattttat cgaaatgcgc gtgccagcat cggcagagta
      421 tgtaagttta attcgtttaa cactttctgg cgttttttcg agagctggtg ctacatatga
      481 tgatattgaa gatgccaaga ttgcagttag tgaagctgtg acaaatgcag ttaaacatgc
      541 atacaaagaa aataacaatg tgggcattat taacatatat tttgaaattt tagaagataa
      601 aattaaaatt gttatttctg ataaaggtga cagttttgat tatgaaacaa ctaaatcaaa
      661 aataggtcct tacgataaag acgaaaatat agacttttta cgcgaaggtg gcctaggttt
      721 atttttaatc gaatctttaa tggatgaagt cacagtatat aaagaatctg gtgtgacaat
      781 cagtatgact aagtatataa aaaaagagca ggtgcgaaat aatggcgaaa gagtcgaaat
      841 cagctaatga aatttcacct gagcaaatta accaatggat taaagaacac caagaaaata
      901 agaatacaga tgcacaggat aagttagtta aacattacca aaaactaatt gagtcattgg
      961 catataaata ttctaaagga caatcacatc acgaagattt agttcaagtt ggtatggttg
     1021 gtttaatagg tgccataaat agattcgata tgtcctttga acggaagttt gaagcctttt
     1081 tagtacctac tgtaatcggt gaaatcaaaa gatatctacg agataaaact tggagtgtac
     1141 atgttccgag acgtattaaa gaaattgggc caagaatcaa aaaagtgagc gatgaactaa
     1201 ccgctgaatt agagcgttca ccttctatca gtgaaatagc tgatcgatta gaagtctcag
     1261 aagaagaagt gttagaagca atggaaatgg gacaaagtta taatgcgtta agtgttgatc
     1321 attccattga agctgataaa gatggttcaa ctgttacgct attagatatt atggggcaac
     1381 aagatgacca ttatgactta actgaaaaac gtatgatttt agaaaaaata ttacctatat
     1441 tatctgatcg cgaacgagaa atcatacaat gtacgtttat tgaaggattg agtcaaaaag
     1501 agacaggtga gcgtatcggt ttaagtcaaa tgcatgtatc acgacttcag agaacggcaa
     1561 ttaagaaatt acaagaagca gcacatcaat agaatttgtt tattaatgat acgttttata
     1621 atgaaaaatc catataatta tcccttgatt attaaattga aatcgagggg tatttttaat
     1681 ttaattaaga ttttcgaatt aatacattat tagtgtagtt taatgtgtat ccacataaat
     1741 gtcgcgatat agtattaata atttaagtga agaagatatc taattgtcgt tttaaatagg
     1801 tgggttgcta ttagaataaa aaaagtagtc ttagattatg aaatttagaa atgatggtgt
     1861 gtcattttca ataatcttag tgcgttttaa aatatagtat gacctaatca ttcgttttaa
     1921 atgttttgga agtgaaaatt acattaagta tcatacctta atagaagtat tttagaatat
     1981 gttaaaataa atgagtaaat ttaagaaaaa gtgtgggtta agtaaatgga caatcaattg
     2041 attaattcaa tcatagagaa atatcaattt agtaaaaaac aaattgaagc agtattaaca
     2101 ctgctagaag aaaaaaatac agtaccattt attgcgaggt atcgaaaaga gcaaactggt
     2161 ggactagatg aagttcaaat aaagcaaatt gatgacgaat accaatatat ggtcaattta
     2221 caaaaacgta aagaagaagt tatcaaaaat atagaacagc aaggattact tactgaggaa
     2281 ttaaagaagg atattttaaa acagaacaaa ttacaacgtg ttgaagacct atataggcct
     2341 tttaaacaaa agaaaaagac aagggcaact gaggcgaaac gtaaagggtt agagccatta
     2401 gcgatatgga tgaaggcacg taaacatgaa gtctcaattg aagaaaaagc acaacaattt
     2461 ataaatgaag aagtgcaatc ggttgaagat gctatcaaag gtgcacaaga tattattgcg
     2521 gaacaaattt cagataatcc taaatataga acaaaaattt taaaagatat gtatcatcaa
     2581 ggtgtgttaa ctacatctaa aaagaaaaat gctgaagatg aaaaaggtat ttttgaaatg
     2641 tactatgcat atagtgagcc aattaaacgc attgctaatc atagagtttt agctgttaat
     2701 cgtggtgaaa aagagaaagt attatctgta aagtttgaat tcgatacgac atcagtagag
     2761 gatttcattg cacgtcaaga aatcaatcat aataatgtaa atcgcagtta tattttagag
     2821 gcgattaaag atagcttgaa acgcttaatt gtcccttcga tagagcgtga aatccatgct
     2881 gatttaactg aaaaagctga aaatcatgca atagatgttt ttagtgaaaa cttaagaaat
     2941 ctattactgc aacctccaat gaaaggtaaa caaatattag gcgtagatcc agcatttaga
     3001 acaggttgta aattagcagt cattaaccca ttcggtactt ttatagcaaa aggtgtgatt
     3061 tatccgcatc caccagtttc taaaaaagag gcagcagaga aggattttgt acaaatggtt
     3121 aaagcgtatg atgtgcaatt aattgcaatt ggcaatggta ctgcaagtcg tgaaacagaa
     3181 caatttgttg cagatttaat taaaaagcat cagttgccag tacaattcat cattgtcaat
     3241 gaagcgggcg cttcagtata ctcagcatca gaaattgcta gagatgaatt tcctgatttt
     3301 caagtggaag aaagaagtgc cgtatcaatt ggacgacgcg ttcaagatcc attaagtgaa
     3361 ttagttaaaa tcgatcctaa atctattggt gtcggacaat accagcatga tgttaatcaa
     3421 aaagcactag aaaatgcatt aactttcgtt gttgaaacag cagttaacca agtaggtgtt
     3481 gatgtcaata cagcatcatc atcattatta caatatgtgt ctggtctaag ttcgcaaatt
     3541 gctaaaaata taattgcata tagagaagaa aatggcgcaa taaagcataa taaagagtta
     3601 agcaagatta agcgtttggg tgctaaaact tttgagcaga gtataggatt tttaagaata
     3661 gtagacggtt cagagccatt ggataataca tcgattcatc ccgaaagcta taaagtaacg
     3721 tatcagttat tagataaact cggatttggt ggcaatgatt taggtagtga tgcattaaaa
     3781 gctaaattaa attcattgga tatggatgaa ctggcgattg aattacaagt cggtgtacct
     3841 acattagagg atattattaa atccttgaaa gcacctaatc gagatccaag ggacgagttt
     3901 gaaacaccaa tccttaaatc cgatgtgcta tcaattgaag atttacaaga aggaatgaaa
     3961 ttgagtggta cagttagaaa tgtagtagat tttggagcat ttgtagatat aggtgttaaa
     4021 caagatggac ttgtccatgt ttcgaaactt tctaagaagt tcgtaaaaaa tccaatggat
     4081 attgtcagtg ttggtgatat cgttgacgtt tggatttaca gtattgacaa aaataaagac
     4141 aaagtatcat taacgatgat tgatccacat gaataatgac aaacttcagc gaatggttga
     4201 gaatctttcg gaagaaaaat ttggacgtac gtttcgacat tgtgcatatt ttaataaaag
     4261 gttacgtaca acaggcggac gttatctttt aaagtcccat gatattgaaa ttaatccaaa
     4321 acaatatgag cattatggag aagatgctgt tgtaaaaatt atactgcacg aattgtgtca
     4381 ttatcacttg catattgctg gtaaaggtta tcaacataaa gatcaagatt ttaaacgatt
     4441 gagccaacag gttggagcgc ctagattttg taacagcatt gaaagctatc aacaacgggc
     4501 aaattatgaa tattattgca ctaaatgtca tgcaaaatat atacgtatcc gtaaagttga
     4561 tacgaatcgt atgcgttgcg gacattgcaa tggaaaatta agaatgaaaa gacaattgaa
     4621 ataagtacaa tacaaataga gctaattcgt gtatatgtaa gattatttat gagttgtatg
     4681 gaatttatat agaatttatc agtgagttat tttgattggt aaacatagta attgaataag
     4741 aagaaattgt gtttataaaa tgtttaaagc cgagattgtc gtaatttaat acttcgcaat
     4801 ctcggctt
//
LOCUS       DAMQWL010000154         4727 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.158, whole genome shotgun sequence.
ACCESSION   DAMQWL010000154 DAMQWL010000000
VERSION     DAMQWL010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4727
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.158"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            304..762
                     /locus_tag="PF788_002489"
     CDS             304..762
                     /locus_tag="PF788_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDG6304730.1"
                     /translation="MKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIEL
                     IDNNDKVNNKFLSEMLNVSKPAITKSIKKLLAKDLVVESHNEFNKREVNYSLTQKGKK
                     LSYIHDELHEKSVKKYEEVLKVFDDDEMAVIIEFLNRSIEELKKEDGLND"
     gene            755..1918
                     /locus_tag="PF788_002490"
     CDS             755..1918
                     /locus_tag="PF788_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6304731.1"
                     /translation="MINSNIRLYILGFLAFFASLIQNIYTPIIPRLYDDFQVPLFWIN
                     ATVGGFIFIVAVMQIVLGRSIDSRDSKKVLLTGLGIVIISSFICAVTHNFILFAISRL
                     FQAIGCGIIPLVTLTLLAKLSTDNGRAQAMANYQIFLSCAPALAPILGSTLGARWDYI
                     GIFSFLLVISIVLFLIIFFIDIPNVEKGIVKLTEKIEEKYLTDKVFITLVTLGFLIFF
                     TYFSILVYLPTLLNNTYDIGVGISGVLFLPITVSVILGSLFYKRFSKKYNEIMILRVT
                     ITGFAIFTLLFGWLNESNVIILSVIIFILGTCVGIVPALLSTIISKRFEHIKGKVLGV
                     FNFVRYIGMTVGALLIGIISQPLVAFYFTTITIMLIVIFLYIKIVDFQLKYAK"
     gene            1908..2006
                     /locus_tag="PF788_002491"
     CDS             1908..2006
                     /locus_tag="PF788_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304732.1"
                     /translation="MPNKLKKAVNHFNRWNDSLLFVYRNLKFMPLC"
     gene            complement(2015..2626)
                     /locus_tag="PF788_002492"
     CDS             complement(2015..2626)
                     /locus_tag="PF788_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDG6304733.1"
                     /translation="MEQIITEFISRFGYAAIFILILLENVLPIVPSEIILTFAGLMSV
                     KSHLSILTLFIIATIASFIGLLILYYICRLISEERLYRFIDRHGKWIKLKSKDLKRAN
                     DWFKKYGVWAVFICRFIPVLRVLITIPAGVNRMNVVTFTVISLIGTTIWNFGLILLGR
                     TLSDSFGMLMTGLHTYSRIMYVVIIIAVIYFAIRYIGKRKRVK"
     gene            3173..4450
                     /locus_tag="PF788_002493"
     CDS             3173..4450
                     /locus_tag="PF788_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002463344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6304734.1"
                     /translation="MKEKRTNVRWMFALAFFFIGVIAYMDRANISYIAKQMMDDLGMT
                     KPQFGLLASFFSLGYALMQVPSGMLAEKFGPRKMITIALVWWSAFTILTGMIKNHGLI
                     YLVRFLFGVGEAPMYPSNAVFNSFWFSKNEKGRASSALLAGSYFGPVLAPIVTIAIVN
                     AFNWQAVFYIFGAVGILMAVLWAIIAKDLPEQHRMVNEAEKRFIMENRDIVATEKSSP
                     PWNDFFKRFSFYAIAIQYFVVQFIITLFLIWLPTYLTEVFHVNFKEMSISSLPWLLMF
                     FLILSAGAISDRVLGLGRSKFVARGVIAIAGFIVFAVSIIFAVRTGNLYVSIFWLSLG
                     LGGIGISMGMSWAAATDLGRNFSGTVSGWMNLWGNIGALISPLLAGLFVEHLGWTMTF
                     QLLIVPAVIAVIMWFYVKPDQPLIVSDDKAIEK"
BASE COUNT         1659 a          606 c          845 g         1617 t
ORIGIN      
        1 tacgagtatt tttgcagcat gcaaatggca ttgctacatt tattaaaatg cgcaatttgt
       61 tatgagtaac ttttttggat agtaggcaca ttaaagtgtc gaaaacaatt tgtgtggaag
      121 acagggtaaa ttctgcttat ttaaaatgat agtttgtatt ataggtggat ttgtgaaatg
      181 cggaataaat ggtgcataac taagtaaata tatgttaatt acaacaatat ttgacaaaaa
      241 tgggagtgac aacaataata tagttaaccg gttaactaat gaagaggagg aataatagtg
      301 gatatgaaga gagaagttat tttaaaatta caacaattta ttatagaaag agaaaatgcc
      361 gataaaagaa gacagtataa aaaggaaaat gaggaactag atttatctct aacacaattt
      421 catatcatag agttgattga taataatgat aaagtgaata ataaattttt gtctgaaatg
      481 ttaaatgtat caaaaccagc aattactaaa tcgataaaaa aacttttagc gaaagactta
      541 gtagttgaat cgcacaatga atttaacaaa agagaagtta attattcatt aacacaaaaa
      601 ggaaaaaaat tatcttatat acatgatgaa ttacatgaaa aatcggtaaa aaaatatgaa
      661 gaggtactta aagtctttga tgatgatgaa atggcagtta ttatagagtt tttaaaccgt
      721 agtatagaag aattaaaaaa agaagatggt ttaaatgatt aatagtaata tcagattata
      781 tattctagga tttttagcat ttttcgcatc attgattcaa aacatataca cgcctattat
      841 tccgagacta tatgacgatt ttcaagtacc actattttgg ataaatgcga cagttggcgg
      901 ttttatattt atcgttgcag ttatgcaaat tgtacttggt agaagtatag attctcgtga
      961 ttcgaaaaaa gtacttttaa cgggattggg aatagtaatc atatctagct ttatttgtgc
     1021 agtgacacat aactttatat tatttgctat atcaaggtta tttcaagcaa ttggttgcgg
     1081 aattattcct ctcgtgactt taactttatt agccaaacta agtacagata atggtagagc
     1141 tcaagctatg gcgaactatc aaatattttt atcatgtgca ccagctttgg caccaatctt
     1201 agggagtact ttaggtgcaa gatgggatta tattggtatt tttagttttt tgctcgttat
     1261 atctatcgta ttatttttga ttatcttttt tattgatatt ccaaatgttg aaaaagggat
     1321 tgtaaaatta actgaaaaaa ttgaagaaaa atatttgacc gataaagtgt ttattacttt
     1381 agtgacattg ggatttttaa tattttttac gtacttttca atattagttt atttaccaac
     1441 attattaaat aatacctatg atataggcgt tggaatatca ggagttttgt ttttacctat
     1501 tactgttagt gttatattag gaagtttatt ttataagcga ttttcaaaaa aatataatga
     1561 aataatgata cttcgtgtta ctataactgg atttgctata tttacgttat tgtttggatg
     1621 gttaaacgaa tcaaatgtaa ttatattatc agtaattata tttatattag gtacttgtgt
     1681 tggtattgtg ccagctttgc tgtctactat aatttctaaa aggtttgaac atataaaagg
     1741 gaaagtgcta ggtgtattta attttgtgag atatattgga atgactgtcg gtgcattatt
     1801 aattggtatc atttctcagc cgttggtagc cttttacttc acaactataa ctatcatgtt
     1861 aatagtaata tttctttata taaagatagt tgactttcag ctaaagtatg ccaaataaac
     1921 ttaaaaaagc agtgaatcat ttcaatagat ggaatgattc actgcttttt gtttatagaa
     1981 atttaaaatt catgccttta tgctaacaac aatattattt tactctctta cgtttgccaa
     2041 tgtaacgtat agcaaagtaa atgactgcga taatgatgac aacatacata atacgtgaat
     2101 atgtatgaag accagtcatc aacataccaa agctatcgct caaagtgcgt cctagtaaaa
     2161 ttaaaccgaa attccagatt gtagtaccta ttaatgaaat aacggtaaat gtcacaacat
     2221 tcatgcggtt tacaccagct ggaatggtaa tcaatacacg taatacaggt atgaaacgac
     2281 agataaatac agcccatacg ccatactttt taaaccaatc atttgctcgc tttaaatcct
     2341 tacttttcaa tttaatccac ttaccgtgtc gatcaataaa acgatataga cgttcttctg
     2401 aaatcaaacg gcagatataa tataaaatta acagccctat aaacgatgcg atagttgcaa
     2461 taataaataa agttaaaatt gataaatgtg atttaacaga cataagacca gcaaatgtca
     2521 gaataatttc cgatggtacg ataggtagta cattttctaa taaaattaat ataaaaatgg
     2581 ctgcataccc aaaacggcta ataaattcag tgataatttg ttccattatt aaaaataagc
     2641 tcctttaatt ttcagcaatt gcagacaaat agaaactgga taaattcaaa tgaataatta
     2701 atgatgtcgc atgcgatgtt gaaacaaaca tttgtcttaa aatgtattat aagcaataaa
     2761 tcaaaaaatt gcttgctata agagcaaaaa gtcaataaat gatcatctaa acaacaggcg
     2821 ctgcacaatg aatggttaat gtagttatat gcaatttaaa atgaatgtcg aatatgtaag
     2881 aaagcctgca atatacgttt taaaacacta ggattgcagt atttttaatt aacaaacgat
     2941 aggctactat gtaactaaaa gtacctttat atcgttttaa tagcaaaagt taagcggaat
     3001 ttaataaaat ttttatagat tctattgtaa acgctttcca tgtctgataa tattataaaa
     3061 aataactttg gtacaatttt gtgacaaagt aggggtggac atgccagatg tccgaaaatt
     3121 ttaacgtttc agggtaagtt ttaaaaaatt aattagggaa gtaggaatag ttatgaagga
     3181 aaaacgaact aacgtaaggt ggatgttcgc gcttgcgttc ttctttattg gggttattgc
     3241 gtatatggat agagcaaaca tttcatatat cgctaagcaa atgatggatg atttagggat
     3301 gacaaaacca caatttggtt tattggcatc attcttctct ctaggttatg cattaatgca
     3361 agtaccatcg gggatgttgg ctgaaaaatt cggtccacgt aagatgatta caattgcatt
     3421 agtttggtgg agtgcattta caatcttaac gggtatgatt aagaaccacg gtttaattta
     3481 tttagtgaga ttcttatttg gtgtaggtga ggcgccaatg tacccttcta atgctgtgtt
     3541 taattcattt tggttctcta aaaatgaaaa aggtagagca tcaagtgcat tattagcagg
     3601 atcatatttc ggacctgtat tagcaccaat agttacaatt gctattgtta acgcatttaa
     3661 ctggcaagca gtattttaca tttttggtgc agtaggtatt ttaatggctg tattatgggc
     3721 gattattgcc aaagacttac ctgagcaaca tagaatggtt aatgaagcgg agaaacgttt
     3781 cattatggaa aatcgtgata tcgtagctac tgaaaagtca tcaccaccat ggaatgattt
     3841 ctttaaacgt tttagcttct atgcaattgc aattcaatac tttgttgtac aatttatcat
     3901 tacattattc ttaatttggt taccgacgta tttaacagaa gtattccacg ttaactttaa
     3961 agaaatgagc attagttcat taccttggtt attaatgttc ttcttaatct tatcagcagg
     4021 tgcaatttct gaccgtgtat taggattagg tcgttcaaaa ttcgtagcta gaggtgtaat
     4081 tgcaattgca ggatttattg tgtttgcagt ttcaattatc tttgctgtac gcacaggaaa
     4141 tttatatgta agtattttct ggttatcact aggtcttggt ggtatcggta tttcaatggg
     4201 tatgagttgg gctgcagcaa ctgacttagg acgtaacttc tctggtacag tatcagggtg
     4261 gatgaactta tggggtaata taggtgcatt aatcagtccg ctattagcag gtctattcgt
     4321 agaacatttg ggttggacaa tgacattcca attgttaatc gttccagcag taatcgctgt
     4381 gattatgtgg ttctatgtga aaccagatca acctttaatt gttagtgatg ataaagcaat
     4441 agaaaaataa tttaaacaag cagtaagctt tcacatagtt ggggcttatt gctttttttg
     4501 cgttgaaatt gaaacttttt aaaacagata tggtttaaga tgaaaatgaa gttattgaaa
     4561 tgatatatgt aaagaaataa ggttttaaaa cattagtcag gtaacgcttg taaaagtaca
     4621 tataaatttt aactagcgca aaggtgggcg accaaaggtt caacgatgtt aaataacatt
     4681 agaaattaat tttaattgga ctttaaaagt ttttaaattt agataat
//
LOCUS       DAMQWL010000155         4701 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.159, whole genome shotgun sequence.
ACCESSION   DAMQWL010000155 DAMQWL010000000
VERSION     DAMQWL010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4701
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.159"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            384..3206
                     /gene="fnbB"
                     /locus_tag="PF788_002494"
     CDS             384..3206
                     /gene="fnbB"
                     /locus_tag="PF788_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001566815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding protein FnbB"
                     /protein_id="HDG6304735.1"
                     /translation="MKSNLRYGIRKHKLGAASVFLGTMIVVGMGQEKEAAASEQNNTT
                     VEESGSSATESKASETQTTTNNVNTIDETQSYSATSTEQPSQSTQVTTEEAPKTVQAP
                     KVETSRVDLPSEKVADKETTGTQVDIAQPSNVSEIKPRMKRSTDVTAVAEKEVVEETK
                     ATGTDVTNKVEVEEGSEIVGHKQDTNVVNPHNAERVTLKYKWKFGEGIKAGDYFDFTL
                     SDNVETHGISTLRKVPEIKSTDGQVMATGEIIGERKVRYTFKEYVQEKKDLTAELSLN
                     LFIDPTTVTQKGNQNVEVKLGETTVSKIFNIQYLGGVRDNWGVTANGRIDTLNKVDGK
                     FSHFAYMKPNNQSLSSVTVTGQVTKGNKPGVNNPTVKVYKHIGSDDLAESVYAKLDDV
                     SKFEDVTDNMSLDFDTNGGYSLNFNNLDQSKNYVIKYEGYYDSNASNLEFQTHLFGYY
                     NYYYTSNLTWKNGVAFYSNNAQGDGKDKLKEPIIEHSTPIELEFKSEPPVEKHELTGT
                     IEESNDSKPIDFEYHTAVEGAEGHAEGTIETEEDSIHVDFEESTHENSKHHADVVEYE
                     EDTNPGGGQVTTESNLVEFDEDSTKGIVTGAVSDHTTIEDTKEYTTESNLIELVDELP
                     EEHGQAQGPIEEITENNHHISHSGLGTENGHGNYGVIEEIEENSHVDIKSELGYEGGQ
                     NSGNQSFEEDTEEDKPKYEQGGNIVDIDFDSVPQIHGQNNGNQSFEEDTEKDKPKYEQ
                     GGNIIDIDFDSVPHIHGFNKHTEIIEEDTNKDKPNYQFGGHNSVDFEEDTLPQVSGHN
                     EGQQTIEEDTTPPIVPPTPPTPEVPSEPETPTPPTPEVPSEPETPTPPTPEVPTEPGK
                     PIPPAKEEPKKPSKPVEQGKVVTPVIEINEKVKAVVPTKKAQSKKSELPETGGEESTN
                     NGMLFGGLFSILGLALLRRNKKNHKA"
     gene            3386..4252
                     /gene="galU"
                     /locus_tag="PF788_002495"
     CDS             3386..4252
                     /gene="galU"
                     /locus_tag="PF788_002495"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000721336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDG6304736.1"
                     /translation="MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIVEE
                     AARAGIEDIIIVTGRHKRAIEDHFDSQKELEMVLKEKGKSELLEKVQYSTELANIFYV
                     RQKEQKGLGHAISSARQFIGNEPFAVLLGDDIVESEVPAVKQLIDVYEETGHSVIGVQ
                     EVPEADTHRYGIIDPLTKNGRQYEVKKFVEKPAQGTAPSNLAIMGRYVLTPEIFDYLK
                     TQKEGAGNEIQLTDAIERMNNDNQVYAYDFEGERYDVGEKLGFVKTTIEYALKDDSMR
                     EELTRFIKALGL"
     gene            complement(4463..>4701)
                     /gene="sarU"
                     /locus_tag="PF788_002496"
     CDS             complement(4463..>4701)
                     /gene="sarU"
                     /locus_tag="PF788_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HTH-type transcriptional regulator SarU"
                     /protein_id="HDG6304737.1"
                     /translation="SRKNEILNLKDLFESIRFMYPQIVRSVNRLNNKGMLIKERSHAD
                     ERIVLIKINKIQYNTIKSIFTDTSKILKPRKFFF"
BASE COUNT         1834 a          685 c          908 g         1274 t
ORIGIN      
        1 tcaaacaaaa accgaacgat ataaaaatta tagtgacgtt attaatacaa tgaaaggcgt
       61 ttcagtgact tgttaatgat gcattgtaca ggcgattatt atgtatggtt tagtatattg
      121 ttttaaatta gatgaatttg aatttaattt aaaaagtaag tataaaaaat acaagcctgt
      181 tatatcaagg tgttcaagag ctttgtatgc aatatatatg tgagtttcaa ataataaaaa
      241 actcattata cataaagtta acaacaatct taacttttta ttaactcgct ttttttcatt
      301 gcttttaaaa accgaacaat atagaattgc atttattgag ttttaaaaat aaatgaattt
      361 tgcatttaag ggagaatatt atagtgaaaa gcaatcttag atacggcata agaaaacaca
      421 aattgggagc ggcctcagta ttcttaggaa caatgatcgt tgttggaatg ggacaagaaa
      481 aagaagctgc agcatcggaa caaaacaata ctacagtaga ggaaagtggg agttcagcta
      541 ctgaaagtaa agcaagcgaa acacaaacaa ctacaaataa cgttaataca atagatgaaa
      601 cacaatcata cagcgcgaca tcaactgagc aaccatcaca atcaacacaa gtaacaacag
      661 aagaagcacc gaaaactgtg caagcaccaa aagtagaaac ttcgcgagtt gatttgccat
      721 cggaaaaagt tgctgataag gaaactacag gaactcaagt tgacatagct caaccaagta
      781 acgtctcaga aattaaacca agaatgaaaa gatcaactga cgttacagca gttgcagaga
      841 aagaagtagt ggaagaaact aaagcgacag gtacagatgt aacaaataaa gtggaagtag
      901 aagaaggtag tgaaattgta ggacataaac aagatacgaa tgttgtaaat cctcataacg
      961 cagaaagagt aaccttgaaa tataaatgga aatttggaga aggaattaag gcgggagatt
     1021 attttgattt cacattaagc gataatgttg aaactcatgg tatctcaaca ctgcgtaaag
     1081 ttccggagat aaaaagtaca gatggtcaag ttatggcgac aggagaaata attggagaaa
     1141 gaaaagttag atatacgttt aaagaatatg tacaagaaaa gaaagattta actgctgaat
     1201 tatctttaaa tctatttatt gatcctacaa cagtgacgca aaaaggtaac caaaatgttg
     1261 aagttaaatt gggtgagact acggttagca aaatatttaa tattcaatat ttaggtggag
     1321 ttagagataa ttggggagta acagctaatg gtcgaattga tactttaaat aaagtagatg
     1381 ggaaatttag tcattttgcg tacatgaaac ctaacaacca gtcgttaagc tctgtgacag
     1441 taactggtca agtaactaaa ggaaataaac caggggttaa taatccaaca gttaaggtat
     1501 ataaacacat tggttcagac gatttagctg aaagcgtata tgcaaagctt gatgatgtca
     1561 gcaaatttga agatgtgact gataatatga gtttagattt tgatactaat ggtggttatt
     1621 ctttaaactt taataattta gaccaaagta aaaattatgt aataaaatat gaagggtatt
     1681 atgattcaaa tgctagcaac ttagaatttc aaacacacct ttttggatat tataactatt
     1741 attatacaag taatttaact tggaaaaatg gcgttgcatt ttactctaat aacgctcaag
     1801 gcgacggcaa agataaacta aaggaaccta ttatagaaca tagtactcct atcgaacttg
     1861 aatttaaatc agagccgcca gtggagaagc atgaattgac tggtacaatc gaagaaagta
     1921 atgattctaa gccaattgat tttgaatatc atacagctgt tgaaggtgca gaaggtcatg
     1981 cagaaggtac cattgaaact gaagaagatt ctattcatgt agactttgaa gaatcgacac
     2041 atgaaaattc aaaacatcat gctgatgttg ttgaatatga agaagataca aacccaggtg
     2101 gtggtcaggt tactactgag tctaacctag ttgaatttga cgaagattct acaaaaggta
     2161 ttgtaactgg tgctgttagc gatcatacaa caattgaaga tacgaaagaa tatacgactg
     2221 aaagtaatct gattgaacta gtagatgaac tacctgaaga acatggtcaa gcgcaaggac
     2281 caatcgagga aattactgaa aacaatcatc atatttctca ttctggttta ggaactgaaa
     2341 atggtcacgg taattatggc gtgattgaag aaatcgaaga aaatagccac gtggatatta
     2401 agagtgaatt aggttacgaa ggtggccaaa atagcggtaa tcagtcattt gaggaagaca
     2461 cagaagaaga taaaccgaaa tatgaacaag gtggcaatat cgtagatatc gatttcgata
     2521 gtgtacctca aattcatggt caaaataatg gtaaccaatc attcgaagaa gatacagaga
     2581 aagacaaacc taagtatgaa caaggtggta atatcattga tatcgacttc gacagtgtgc
     2641 cacatattca cggattcaat aagcacactg aaattattga agaagataca aataaagata
     2701 aaccaaatta tcaattcggt ggacacaata gtgttgactt tgaagaagat acacttccac
     2761 aagtaagtgg tcataatgaa ggtcaacaaa cgattgaaga agatacaaca cctccaatcg
     2821 tgccaccaac gccaccgaca ccagaagtac caagcgagcc ggaaacacca acaccaccga
     2881 caccagaagt accaagcgag ccggaaacac caacaccgcc aacgccagag gtaccaactg
     2941 aacctggtaa accaatacca cctgctaaag aagaacctaa aaaaccttct aaaccagtgg
     3001 aacaaggtaa agtagtaaca cctgttattg aaatcaatga aaaggttaaa gcagtggtac
     3061 caactaaaaa agcacaatct aagaaatctg aactacctga aacaggtgga gaagaatcaa
     3121 caaacaacgg catgttgttc ggcggattat ttagcatttt aggtttagcg ttattacgca
     3181 gaaataaaaa gaatcacaaa gcataatcaa tccaaaattg acaggtttat ttcataaatt
     3241 atatgaagta agcctgtttt ttaaaattaa aacaaatttc ccaagaaata attacatact
     3301 caatgacact atgaaggcgt tctaattagt gttaaaatga cgttgataca tagatttaat
     3361 acttaggaaa aggagcacat taactttgaa aaaaataaaa aaggcaatca ttcccgctgc
     3421 tggtttaggg actagatttt taccagcaac taaagcgatg ccaaaggaaa tgcttcctat
     3481 cttagataaa cccacaatac aatatatcgt tgaagaagct gcaagagctg gaattgaaga
     3541 tattattata gtgacaggtc gccacaaacg cgcgattgaa gatcattttg atagtcaaaa
     3601 agaattagaa atggtgttaa aagaaaaagg taaatctgaa ttactagaga aagttcagta
     3661 ttcaacggaa cttgcgaata ttttttatgt aaggcagaaa gaacaaaaag gtttagggca
     3721 tgcgattagt tctgcgcgtc aatttatcgg caatgaacca tttgcggtat tattaggtga
     3781 cgatattgtt gaatctgaag tgccagcagt gaaacagttg attgacgttt atgaagaaac
     3841 agggcactca gttataggtg tccaagaagt tccggaagca gatactcatc gttatggaat
     3901 tattgaccca ttaactaaaa acggacgtca gtatgaagtg aaaaagtttg ttgaaaagcc
     3961 agcacaaggt acggcaccat caaacctagc tattatggga cgttatgtat taacgcctga
     4021 aattttcgat tatttaaaaa cgcaaaaaga aggcgcaggt aacgaaattc agttaacaga
     4081 tgcgattgaa cgtatgaata atgataacca agtgtatgca tatgacttcg aaggcgaacg
     4141 ttatgacgtt ggagaaaaat taggcttcgt taaaactacc atagaatatg cattgaaaga
     4201 tgacagtatg cgagaagaat taacacgatt tattaaagca ttaggtttat aacattaaaa
     4261 gcatgatact cagtaaaatt ggaacacgaa atggtgaact aaattgaatg agtgtcatgc
     4321 ttaatttatg tgttgtgata tatagtaggg tattgaaata atataaaaac aaaagaaagt
     4381 taattatgta tttttattta tactaaattg agaagtagta tgattgctta tttattttat
     4441 caagaggtaa atctgtttaa atttaaaaga aaaattttct tggtttgaga atcttggaag
     4501 tatctgtgaa tatgctttta atagtgttat attgtatttt atttattttg attaacacaa
     4561 tcctttcatc tgcatgggat cgttctttga ttagcatacc tttattattt aatctattaa
     4621 ctgacctaac aatttgagga tacataaatc taatactttc aaacaaatct tttaaattta
     4681 gtatctcatt ttttcgagat g
//
LOCUS       DAMQWL010000156         4682 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.160, whole genome shotgun sequence.
ACCESSION   DAMQWL010000156 DAMQWL010000000
VERSION     DAMQWL010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4682
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.160"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(78..269)
                     /locus_tag="PF788_002497"
     CDS             complement(78..269)
                     /locus_tag="PF788_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001115061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304738.1"
                     /translation="MPEQLSVRKWRLVRDLKQQEVADILGVNAKTVGHWEKDDTNLSN
                     VTVYALAKLYDIEVDQIKV"
     gene            430..759
                     /locus_tag="PF788_002498"
     CDS             430..759
                     /locus_tag="PF788_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304739.1"
                     /translation="MENNKVRKILSENLQELMNDKNIDQRELAEAIGVSQPTVSNWIQ
                     QTKYPRIKRIQQLADYFNVPKSRITESKKDIHQETIAAHFDKEGLTEEEIEEVNRFIE
                     WVRNRDK"
     gene            772..1233
                     /locus_tag="PF788_002499"
     CDS             772..1233
                     /locus_tag="PF788_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000524999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin"
                     /protein_id="HDG6304740.1"
                     /translation="MGLYEELCINNEKIKIEETDQLPNFQPGCYMNGKIYIRRNLSEV
                     RKAEVLYEQLAHHKLTYGNILDQTKWINRKFENYARRHGFTSAVPLHEIVEAHNYGVR
                     NLYELSEYLQLSESYILEAIEQYKKIYGIGTHYGEYSITFEPLRVFKYKEI"
     gene            1251..1685
                     /locus_tag="PF788_002500"
     CDS             1251..1685
                     /locus_tag="PF788_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016170817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304741.1"
                     /translation="MKKVIGLLLVSTLALTACGEKEKPKKEENKKSQTQNHKDSKPKT
                     QQEKMKKVEDKNPPNNSIQNNSNNQNQSQNNQLNNNSDPSNNTPANINENDSQNTNLN
                     DEYVVSPGWTKDEQAKAFEEYKKGKEEEARAGASAVPGANIN"
     gene            1714..2109
                     /locus_tag="PF788_002501"
     CDS             1714..2109
                     /locus_tag="PF788_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000449656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304742.1"
                     /translation="METNKTIDLMNYVEFPKRYTEAKGKLVAQPITTINSARRVENED
                     MTVCYILDQDDDVMDFIFDRDIITVYCPENGTATDEYFCEIIFNSDDTFTLKRLSNYV
                     TIKDRSYPMSKINDVNITGKVVRLFRDFK"
     gene            2199..2345
                     /locus_tag="PF788_002502"
     CDS             2199..2345
                     /locus_tag="PF788_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304743.1"
                     /translation="MNGGENFMVDKNKKQETTRSNPLNKSFEKSGASEKLKSTLSEKA
                     KKKD"
     gene            complement(2342..2956)
                     /locus_tag="PF788_002503"
     CDS             complement(2342..2956)
                     /locus_tag="PF788_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HDG6304744.1"
                     /translation="MTQFLGALLLTGVLGYIPYKYLTMIGLVSEKNKVINTPVLLIFS
                     IETCLIWFYSFIIFNNVDLKNLNLIQLLTGLKANILFLFIFVLTVFVFNPLIVKFIIW
                     LINITRKFMKLDCISLLDKRDKLFNNNGKPVFIVIKDFENRIIEEGELKTYNSAGSDF
                     DLLEVERQDFKVSDLPSNDELYIKHTLVDLKQQIKLDLYLMNEY"
     gene            3082..4287
                     /locus_tag="PF788_002504"
     CDS             3082..4287
                     /locus_tag="PF788_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDG6304745.1"
                     /translation="MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQ
                     KEAMFRLEEKIKEKLNNKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIR
                     NIKRYSSENLLLNKLDTKYMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPN
                     EYLLTNVKIPKRRKTIEDIEKDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIAS
                     ILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKR
                     SISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTK
                     ALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDREL
                     TQKLENIPS"
     gene            complement(4330..>4682)
                     /locus_tag="PF788_002505"
     CDS             complement(4330..>4682)
                     /locus_tag="PF788_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304746.1"
                     /translation="IVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVTCNY
                     IKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMIFEPSHYDDMF
                     ISRKALTPVFSSVL"
BASE COUNT         1908 a          703 c          694 g         1377 t
ORIGIN      
        1 ttcctccttt taatttgttt atgtccattt gttacattac ctaaaagtta taaaaagtta
       61 tacgaaggtc aaaaaattta gacctttatc tggtctacct caatatcata taactttgct
      121 aaagcgtaaa ctgtaacatt acttaaatta gtgtcatcct tttcccaatg accaactgtc
      181 tttgcattga cgcccaatat atctgctact tcttgctgtt tcaagtccct tacaagtctc
      241 cattttctta cggataattg ttccggcatg tcgtccacct ccctttcaca cgtataactt
      301 tatattactt tgtattactt gtcaacagat aaagttatat ttcttcataa aaagttataa
      361 aaagtattgt aaagtaatgt cggttatggt aagttaatat tacattaagt aatattaaag
      421 gagacaacta tggagaataa taaagtcaga aaaattttat ctgaaaacct tcaagaactt
      481 atgaatgata aaaatattga tcagagagaa cttgctgaag ctattggagt ttctcaacct
      541 acagtctcca attggattca acaaactaaa tatccacgaa ttaaaagaat tcaacaactt
      601 gcagattact tcaatgtacc gaaatcaaga attactgaat caaaaaaaga tatacatcaa
      661 gaaacaattg ctgctcattt tgataaggag ggattaactg aagaagagat tgaagaagta
      721 aatagattca ttgaatgggt tagaaataga gacaaataaa gggtgtttat attgggatta
      781 tacgaagaac tttgcataaa taacgaaaaa ataaagatag aagaaactga ccagcttcca
      841 aatttccaac ctggatgcta tatgaacgga aaaatttata taaggcgtaa tttatcagaa
      901 gtacgtaaag cagaagtgtt atatgagcaa cttgcccacc acaagttgac gtatggcaac
      961 attttagacc aaacaaaatg gattaataga aaatttgaaa attatgcacg tagacatggt
     1021 tttacttcag ctgtaccgct acatgaaatt gtagaagctc acaactacgg tgttcgtaat
     1081 ttgtacgagt tgtcagagta tctgcagttg agtgaatcat acatactaga agctatagaa
     1141 caatataaaa agatatatgg tattggaact cactatggcg agtattctat tacgtttgag
     1201 ccgttgagag tttttaaata taaggaaata taaacaaagg agagatacat atgaaaaaag
     1261 taatcggact gctactagta agtacattag ctttaacagc ttgtggtgaa aaagaaaaac
     1321 caaaaaaaga agaaaataaa aagtcacaaa cacaaaatca caaagatagc aaaccaaaaa
     1381 cgcaacaaga aaaaatgaaa aaagttgaag ataaaaatcc acctaataat agcatacaaa
     1441 ataattcaaa caatcaaaac caatcacaaa acaatcaact taataataat tcagatccat
     1501 ctaataatac tcctgcaaat ataaatgaaa acgattcaca aaatactaat ttaaatgatg
     1561 agtatgtcgt ttcgcctggc tggactaaag atgaacaggc taaagctttt gaagagtaca
     1621 aaaaaggaaa agaagaggaa gcaagagctg gtgctagcgc agtaccagga gccaatatta
     1681 actaataaaa caatataaga aagaagagct aatatggaaa caaataaaac aatcgattta
     1741 atgaattatg tggaatttcc aaaaagatac acagaggcaa aaggcaaatt agttgcacaa
     1801 ccaataacta ctataaatag cgcaagaaga gttgaaaatg aagatatgac tgtttgctac
     1861 attttagatc aggatgatga tgtaatggac tttatctttg acagagatat aattactgtt
     1921 tactgtcctg aaaacggaac tgcgactgat gaatattttt gtgaaattat atttaactca
     1981 gatgacacat ttaccctaaa gcgattatct aattacgtta ccattaaaga tagaagctac
     2041 ccaatgtcaa aaataaatga cgtaaacatt acgggcaaag tcgtcagatt atttagagat
     2101 tttaaataaa cttggcttta attacgatta aaagtaccta tatagcgtga cgagaaaaag
     2161 gattaaaaaa aatcaaaaaa cgcctactag tgtagacgtt gaatggtggt gagaatttta
     2221 tggtagataa aaacaaaaaa caagaaacta ctcgtagtaa cccattaaac aaaagttttg
     2281 aaaagtcagg cgccagcgaa aaattaaaaa gcactttatc agaaaaagct aagaaaaaag
     2341 attagtattc attcattaaa tataaatcca atttaatttg ttgtttaagg tctacaagcg
     2401 tatgtttaat atacaattca tcgtttgacg gtaaatcaga tactttgaaa tcttgtcgct
     2461 caacttctag taaatcgaaa tcgctaccag ctgaattata ggttttaagt tcaccctctt
     2521 caatgattct gttttcaaag tcttttataa ctataaatac tggtttaccg ttgttattaa
     2581 acaacttgtc tcttttgtct aataagctta tacaatccaa tttcataaac tttctggtta
     2641 tattaattaa ccagataata aatttaacaa ttaaaggatt aaatacaaac actgttaaaa
     2701 caaaaataaa tagaaacaaa atatttgctt ttagacctgt aagcaactga attaaattca
     2761 aattttttaa atcaacatta ttaaaaatta taaaactata aaaccatatc aaacatgttt
     2821 caatagaaaa aatcaataat acaggagtat tgataacctt gtttttttca ctaactaaac
     2881 ctatcattgt tagatattta tatggtatgt aacctaaaac tcctgtaaga agaagcgccc
     2941 ctagaaattg agtcatctta tcacctactt tttattttat tataacacat ttagtaccta
     3001 gtactaaatt acgggtagcc cgactaccct tattattttt taatatttta tagaacatac
     3061 gttcttgcag gaggtataaa catgtggatt gaaaaattta aaaacaaaaa taacgaaact
     3121 aaatacagat actacgagaa gtataaagat ccatacacag ataaatggaa gcgcgtaagt
     3181 gttgtgttga acaagaatac aaaacaatct caaaaagaag caatgtttcg tttagaagaa
     3241 aaaataaaag aaaaactgaa caacaagtcg tcaagcgaat taaaaacttt gacttttcac
     3301 gcgctattag atgaatggct tgaatatcat ataaaaacat caggttcaaa gttgactact
     3361 cttaataata taaaaataag aattagaaac attaaacgat acagctctga gaacttgctt
     3421 ttaaacaaac tagatacaaa atatatgcag atatttatta ataaattatc agatatctat
     3481 tctcaaaatc aagtaacccg tcaactcgga gatatgaaag gagctattaa atatgcagtt
     3541 aaattttaca attatccaaa tgaatatttg ttaactaatg tcaaaattcc taaaagaaga
     3601 aaaacaatag aggatatcga aaaagatgaa tctaaaatgt acaactattt agaaatgaac
     3661 caagtcctac agatacgtga tcatatacta aatgataata agttacacaa gcgaaatcgc
     3721 attttaattg ccagcatctt agaagtacag gctttaactg gtatgcgcat aggagaacta
     3781 caagcactgc aggaaaaaga tatagattta ttaaacaaaa ctatcaatat aacaggtaca
     3841 attcaccgca ttaaatacga ggaaggattc ggatacaaag acactacaaa gactataagt
     3901 tcaaaaagaa gtatcagcat caattctaga accgtagaaa tttttaaaaa gataatactg
     3961 gaaaacaaaa tgttgaaaag atggaattcg agctatgttg acagagggtt catattcaca
     4021 acaaaaaaag ggaatccttt atgtaataat caaatcgccg gtgtgcttaa gaaaactaca
     4081 aaagctttaa atatgaataa gaaagttacc acgcacacat ttagacatac acacataact
     4141 ttattagtag aaatgaatgt ttctttaaaa gcaattatga aaagggtagg acatgtagat
     4201 gaaaaaacaa ccattcgcat atatactcat gtaactgaaa aaatggatag agaactaact
     4261 caaaaactcg aaaacattcc aagttagctt aaatccgccc tttttttgcc cttatatttt
     4321 ttacaagctt tataaaacgc ttgagaacac tggcgttaaa gcttttcttg aaataaacat
     4381 atcatcataa tgtgatggtt caaatatcat ttgtacaatc aaaggcttca tgttcttaac
     4441 aatatcatct aaatggttat ctaaaattgg tgacactgct tttaaatcat taagaaaagg
     4501 ctcccatttg cctaaagtat tatctaattc ttctaattta gttttaatat aattacaagt
     4561 tacattagga atcagggaca aaaattcttt cttttttaca tttaacattt caattgcatg
     4621 tcttaaattc ttacgtattt tgggaattgt attaatcaaa tattttatta catcgacaat
     4681 tt
//
LOCUS       DAMQWL010000157         4522 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.161, whole genome shotgun sequence.
ACCESSION   DAMQWL010000157 DAMQWL010000000
VERSION     DAMQWL010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4522
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.161"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(287..1933)
                     /locus_tag="PF788_002506"
     CDS             complement(287..1933)
                     /locus_tag="PF788_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDG6304747.1"
                     /translation="MNSSSPENPNGKKYSPVFIYSAIVVAIVVLLGAFLPEQFNYVTN
                     NIKMWITEKLGWYYLILTTIIVFFCIFLIFSPIGKLKLGKPNDKPEFNTISWFAMLFS
                     AGMGIGLVFYGAAEPMAHFATPPTADPKTTEAYTEALRSTFFHWGFHAWAVYGVVALA
                     LAYSQFRKGEPGLLSRTLRPLLGDKVEGPIGIFIDVLSVFATIVGVAVSLGMGALQIN
                     GGLHYLFNVPNNTFVQAIIIIVVTILFIASAWSGLSKGIQYLSNLNIGLGTILMVAAL
                     IVGPTVLILNMLTSSTGSLLNTFLFNSFDTAALNPQKREWMSSWTLYYWGWWLSWSPF
                     VGVFIARVSKGRSIREFISGVLLVPAIVSFVWFSVFGVLGIETGKKHKEIFDMTPETQ
                     LFGVFNHVPFGIVLSLIALLLIASFFITSADSATFVLGMQTTFGSLNPSSMVKVVWGI
                     SQALIAFVLLLAGGGNGAEALNAIQSAAIISAFPFSFVVILMMVSFYKDANQERKFLG
                     LTLTPNKHRLQEYIKSQQEDYESDILEKRQSRRNIEKKDN"
     gene            2137..2499
                     /gene="mscL"
                     /locus_tag="PF788_002507"
     CDS             2137..2499
                     /gene="mscL"
                     /locus_tag="PF788_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008530241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDG6304748.1"
                     /translation="MLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLVENIIMPLIG
                     KIFGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKKEEAEEEAVV
                     EENVVLLTEIRDLLREKK"
     gene            complement(2570..3439)
                     /locus_tag="PF788_002508"
     CDS             complement(2570..3439)
                     /locus_tag="PF788_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001810626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HDG6304749.1"
                     /translation="MEMSRLNLTDDNDIDEIIAWRGEQEELEQKRDTYKKRYHEFEME
                     IARLESLTKDKELLDSDKLKDEYELKKGKMNTLIDEYSAVHYQCQNNINKTQSIVSHI
                     NYLNQELKDQQEIFQLAEIVSGKNNKNLTLENFVLIYYLDQIIAQANLRLATMSDNRY
                     QLIRREAVSHGLSGLEIDVFDLHSNKSRHISSLSGGETFQSSLALALGLSEIVQQQSG
                     GISLESIFIDEGFGTLDQETLETALDTLLNLKSTGRMVGIISHVSELKNRIPLVLEVK
                     SDQYQSSTRFKRN"
BASE COUNT         1485 a          793 c          610 g         1634 t
ORIGIN      
        1 attgatttat gtcccagcct gagttaattt tctataaaag tatatttaat ttgcgtttat
       61 accgtcaaac ttcactttag ctttgtcaaa cccctttcta ttaagttttc agaaataaac
      121 ctatcttaaa atataaaaaa atcgagaatt cgtagtttaa taacgaaatt ctcgttctta
      181 tccttttgaa tatactcaat tttccacaaa aacaaacaag tagtatatct gttctagcta
      241 ctagaatgac atactacttg ttattaaaat acttaactaa actttattag ttatcttttt
      301 tctctatatt tctacgtgac tgacgctttt caagaatgtc agattcataa tcttcttgtt
      361 gactcttgat atattcttgt aagcgatgtt tattcggagt caatgttaaa cctaggaatt
      421 tacgttcctg gttcgcatcc ttgtagaaac ttaccatcat gagtatgacg acaaaggaga
      481 atgggaatgc acttataatt gcagcacttt gaatcgcatt taaagcttca gcgccgttac
      541 cgccaccagc taataaaagt acaaatgcta ttaaggcctg tgaaattccc caaacaactt
      601 ttaccatact agatggattt aatgaaccaa atgttgtttg cattcctaat acaaatgttg
      661 ctgagtcagc agatgtaata aagaatgatg caattaataa taatgcaatc aacgataaaa
      721 caatgccaaa tggcacatga ttaaacactc caaatagctg tgtttcagga gtcatatcaa
      781 aaatttcttt gtgtttctta cctgtctcga tgcctaatac accaaagaca ctaaaccaaa
      841 caaaactaac aattgctgga actagcaaga caccagaaat gaactctcta attgaacgtc
      901 cttttgaaac tcgtgcaata aacactccaa cgaatggact ccaacttaac caccaacccc
      961 agtaataaag tgtccatgaa gacatccatt cacgtttttg aggatttaaa gctgctgtat
     1021 caaaactatt aaacaagaat gtgtttagta aactacccgt agagctagtt aacatattta
     1081 aaataagaac agttggtcca acaattaaag cagctaccat taaaatagta cctaaaccaa
     1141 tgttcaagtt acttaagtat tgaatacctt tacttaatcc agaccatgca cttgctataa
     1201 ataagatagt aacaacaatg atgataatcg cttgtacaaa cgtattgttt ggaacattga
     1261 acaagtaatg taaaccacca ttaatttgta gagcacccat acctaacgaa acggctaccc
     1321 caacgattgt cgcaaataca gataaaacgt caataaaaat cccaatagga ccttctactt
     1381 tatcacctaa aagaggacgt aaagttctag ataataaacc tggttcacct ttacggaatt
     1441 gcgaatatgc caacgctaac gcaacaacac cataaacagc ccaagcatgg aatccccaat
     1501 ggaaaaatgt tgaacgtaga gcttcagtat aagcttcagt agttttggga tctgctgtag
     1561 gtggcgtagc aaagtgcgcc atcggttcag ctgcaccata aaacaccaaa cctatcccca
     1621 taccagcact aaacaacata gcaaaccatg aaattgtatt aaactcaggt ttgtcatttg
     1681 gtttacctag tttaagtttt ccaataggac taaaaataag gaatatacag aagaacacga
     1741 taatcgtagt aagaataaga taataccaac ctaacttttc tgtaatccac attttaatat
     1801 tattggtaac atagttgaat tgttcaggta aaaatgcacc aagtaatacg actatagcaa
     1861 caacaattgc actatagatg aagactggtg aatacttctt tccatttgga ttctctggtg
     1921 aagaagaatt cataattaat tactcccttc aattctatat ttaattttat gtagtagaat
     1981 aaaaatatta tctaaacatt ttattcaata actcacgcac ctttatagga taacaaaggt
     2041 ctttgcgata atcaaatttt cttgaataat ctattttcta atttttttat ttgttgtata
     2101 attgaggtta catttaaaaa agagaggttg agtgtaatgt taaaagaatt caaagagttc
     2161 gccttaaaag gtaacgtctt agatttagca attgctgttg tgatgggtgc agctttcaac
     2221 aagattatat cttcattagt agaaaatatc attatgccat taattggtaa aattttcgga
     2281 tcagttgatt ttgctaaaga atggtcattc tggggtatta aatacggttt atttatccaa
     2341 tctgttatcg actttattat catcgcgttt gctttattca tctttgttaa gattgcaaat
     2401 acattaatga agaaagaaga agccgaagaa gaagcagttg tggaagaaaa tgttgtgtta
     2461 ttaactgaaa tcagagattt attacgtgag aaaaaataat ttttaaataa aaagagatgg
     2521 gctaaggttg ttctatacat tccaaagtac catctctatt ttttatgttt taatttcttt
     2581 tgaatcttgt tgaactctga tattgatctg atttcacttc taaaactaaa ggtattctat
     2641 ttttcaattc gctcacatgt gaaataatcc caaccattct accagttgat ttaagattta
     2701 ataaagtgtc taacgctgtt tcaagcgttt cttgatctaa tgtaccgaat ccttcatcaa
     2761 taaatattga ttctagtgaa atacctcctg attgctgctg tacaatttcg cttaacccta
     2821 aagctaatgc aagcgacgat tggaaagttt ctccacctga taacgagcta atatgtctag
     2881 acttatttga atgcaaatca aatacatcaa tttctaggcc actaagacca tgagaaaccg
     2941 cttctcgcct aattagttgg tatcgattat ctgacattgt tgctaatctc agatttgctt
     3001 gagcaataat ttgatctaaa tagtaaatta agacaaagtt ttccaatgta agatttttgt
     3061 tattcttacc actgacaatt tcagccaatt gaaatatttc ttgttgatcc tttaattctt
     3121 gatttaagta attaatatgc gaaactatag attgtgtttt attaatatta ttttgacatt
     3181 gataatgaac agcagagtat tcatctatca gtgtattcat ctttcctttt tttagctcat
     3241 attcatcttt taatttatca gagtccaata actctttatc cttagttaat gattctaacc
     3301 tagctatttc catttcaaat tcatgataac gttttttata agtatccctt ttctgctcta
     3361 attcctcttg ctcgcccctc caggctatta tttcatctat atcattgtca tcagttaaat
     3421 tcagcctcga catttccatt tcaatagact gttcattcaa ttctaagtca ttattgtaag
     3481 tttctagttg attttcataa tgatttagat tattttgctc aattaacttt ctttgagaca
     3541 attgcattaa cttatcttca atctcctttg agagttcttg atgctgattc acatcttgaa
     3601 catacttctt ataatccacc tcaaaattag tgatattatt atatttcgag agtgtttcaa
     3661 attcagtgat gagatctcga cataatttca actcagattc atttttattt agacgcaatt
     3721 gtttattatg aatttgcaac gttagattat ctttttcttc tttcatttgt tctataaatt
     3781 tattaagatc tctttgatta ttcaatgcat tttcattttc tagcagacgc ttattcaata
     3841 cttcaagtga aaaatcactt tgcgttttaa tattaatatt cgatattttt tcattaacaa
     3901 atttaatttc agaattatgc acagcaatat tcgattttat agcgtggata tttgcttcaa
     3961 tttctttaat ttcattttga cgtttagcaa tactgtcaaa atcaatatga tgccctaaat
     4021 cctgaatttc attaccacat atcggacatt gatctccaat atttacagca gatttaattt
     4081 cacttataaa gctttcttta tcatttaagt ccaattttgt tttatcgtag cgatctaatt
     4141 ttatttcgag attcttcaat atagatgttt cttcattaat ttgattctct aactcttgct
     4201 tactacctaa tagtttatct aattcagctt tagctttttc attttcttta attatattaa
     4261 tttcattatt tatgttcgtt atcgtattat ttagttcgat aattttctcg taatcacttt
     4321 ggttattacc tattgaatct tcgaccgttt ctaaaccttt aattagatca tttaattcat
     4381 cacctaattg ttcaccctca gttctcaagc gttcaatatt gagataactt tgttgatact
     4441 tattaatatc gttaaataat actctagttt tatcaataaa agagatttta ctttcaatta
     4501 aatctccatt ttcttctaac at
//
LOCUS       DAMQWL010000158         4465 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.162, whole genome shotgun sequence.
ACCESSION   DAMQWL010000158 DAMQWL010000000
VERSION     DAMQWL010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4465
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.162"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            185..1360
                     /gene="rpsA"
                     /locus_tag="PF788_002509"
     CDS             185..1360
                     /gene="rpsA"
                     /locus_tag="PF788_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDG6304750.1"
                     /translation="MTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGII
                     PISQLSTHHIDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLETEKSYSYLQ
                     EKLDNNEIIEAKVTEVVKGGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEE
                     LDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG
                     LVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQF
                     HENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKIL
                     GIDEENERVSLSIKATLPNEDVVESDPSTTKAYLENEEEDNPTIGDMIGDKLKNLKL"
     gene            1582..2892
                     /gene="der"
                     /locus_tag="PF788_002510"
     CDS             1582..2892
                     /gene="der"
                     /locus_tag="PF788_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDG6304751.1"
                     /translation="MTKPIVAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYS
                     SGEWLTHDFNIIDTGGIEIGDAPFQTQIRAQAEIAIDEAYVIIFMVNVREGLTQSDEM
                     VAQILYKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVV
                     SHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEY
                     SYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK
                     RVAGYAHEQGKAVVIVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERT
                     RLRTLFPYINEASENHKKRVQSSTLNEVVTGAISMNPTPTDKGRRLNVFYATQVAIEP
                     PTFVVFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHIIARKRN"
     gene            2909..3907
                     /locus_tag="PF788_002511"
     CDS             2909..3907
                     /locus_tag="PF788_002511"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDG6304752.1"
                     /translation="MTKITVFGMGSFGTALANVLAENGHDVLMWGKNQDAVDELNTCH
                     TNKKYLKYAKLDVNIIATSDMTKAIQFADIYLMALPTKAMREVASQINDKLTSKKTFI
                     HVAKGIENGTFKRVSEMIEDSISPEYNAGIGVLSGPSHAEEVVVKQPTTVAASSKDKS
                     VSKLTQDLFMNDYLRVYTNDDLIGVELGGALKNIIAVASGIVAGIGYGDNAKAALMTR
                     GLAEISRLGEKLGADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQGESMDQALSE
                     MNMVVEGIYTTKSVYHLAKEKNVDMPITNALYRVLFENISVKECVKDLMERDKKSE"
     gene            4078..4350
                     /locus_tag="PF788_002512"
     CDS             4078..4350
                     /locus_tag="PF788_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDG6304753.1"
                     /translation="MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQL
                     IGFGNFEVRERAARKGRNPQTGKEIDIPASKVPAFKAGKALKDAVK"
BASE COUNT         1596 a          598 c          897 g         1374 t
ORIGIN      
        1 actgtattac tttgatacaa aaatggttgt aataaatatt tatcgatatg acgacttgaa
       61 tatgataaag tgacatattt atgtatatga ctatttcgca aaatgtaatc gaggtagaat
      121 ttcttgacaa ttctgtcagt ttataagatg ttataaatat gtagtgtata aggaggcaaa
      181 caagatgact gaagaattca atgaatcaat gattaacgat attaaagaag gtgacaaagt
      241 cactggcgag gtacaacaag ttgaagacaa gcaagttgtt gttcatatca acggtggtaa
      301 atttaatggg attattccta ttagtcaatt atctacgcat catattgata gcccaagtga
      361 agttgtaaaa gagggcgacg aagttgaagc atatgtcact aaagttgagt ttgatgaaga
      421 aaatgaaact ggagcttaca tcttatctag aagacaactt gaaactgaga agtcttatag
      481 ttatttacaa gaaaaattag ataataatga aatcatcgaa gcgaaagtaa cagaagtagt
      541 taaaggtggt ttggttgttg atgtaggaca aagaggtttt gttccggctt cactaatttc
      601 aacagacttc attgaggatt tctctgtgtt tgatggacaa acaattcgta ttaaagttga
      661 agaattggat cctgaaaata atagagtcat tttaagccgt aaagcagttg aacaagaaga
      721 aaacgatgct aaaaaagatc aattattaca atctttaaat gaaggcgatg ttattgatgg
      781 taaagtagcg cgtttaactc aatttggtgc atttatagac attggcggtg ttgatggttt
      841 agtgcatgta tctgaacttt ctcacgaaca tgttcaaaca ccagaagaag tagtttcaat
      901 tggtcaagat gttaaagtta aaattaaatc tattgataga gatacagaac gtatttcatt
      961 atcaatcaaa gatacgttac caacaccttt cgaaaatatt aaaggtcaat tccacgaaaa
     1021 tgatgtcatt gaaggtgtcg tagtaagatt ggcaaacttt ggtgcatttg ttgaaattgc
     1081 accaggtgta caaggacttg tacatatttc tgaaattgca cacaaacaca ttggtacgcc
     1141 aggtgaagtg ttagaacctg gtcaacaagt aaatgttaaa atattaggta ttgatgaaga
     1201 gaatgaaaga gtatcactat ctattaaagc aacattacca aacgaagatg ttgttgaaag
     1261 tgatccttct acgactaagg cgtacttaga aaacgaagaa gaagataatc caacaattgg
     1321 cgatatgatt ggtgataaac ttaaaaatct taaactataa tttaatattt aatagtcaac
     1381 tccacatgtt tatgattgca tgtggagtat ttttatgtaa caaaatatac tcggaatgat
     1441 aacgtggaca aatttaacta agtgtttaaa aagataaagt tttaagtgct gatttttatc
     1501 attacagtaa taaactcatt ttgaatacac agtctcatgt gatattatta aaaagatata
     1561 agaaagagag gaagttagct tatgactaaa cctatagtag ctattgtagg taggcctaat
     1621 gtaggtaaat ctacaatttt taatagaata gttggagaac gtgtttcgat tgtggaagac
     1681 acgccaggtg taacacgaga tcgtatttat tcttcaggtg aatggttaac acatgatttc
     1741 aatattattg atacaggtgg tattgaaatt ggtgatgcac cattccaaac acaaattaga
     1801 gcgcaggcag aaatcgccat agatgaagcg tatgttatta tttttatggt taacgtgcgt
     1861 gaaggattga cacaaagcga tgaaatggtc gctcaaattt tatacaaatc taaaaaaccg
     1921 gtcgtattag cggttaacaa agtagataat atggaaatgc gtacagacgt gtatgatttc
     1981 tattcattag gatttggtga accgtatccg atatcagggt cacatggttt aggtcttggt
     2041 gacttgttag atgcagttgt ttctcatttt ggtgaagagg aagaagatcc ttatgatgaa
     2101 gatacaattc gactatccat tattggacga ccaaacgtag gtaaatcaag tttagtaaat
     2161 gctattttag gtgaagatcg cgttatcgtt tctaatgttg cagggacaac gagagacgct
     2221 attgatacag agtatagtta tgatggacaa gattatgttt taatcgatac tgctggtatg
     2281 cgtaaaaaag gaaaagtata tgaatcaact gagaaatatt cagtattaag agctttaaaa
     2341 gcgattgaac gttcaaatgt tgttttagtg gtcatagatg cagaacaagg catcattgaa
     2401 caagataaac gtgttgcagg atatgcacat gaacaaggta aagcagtcgt gattgtcgta
     2461 aataaatggg atactgtgga aaaagatagt aaaacgatga agaaatttga agatgaagta
     2521 cgtaaagaat tccaattttt agattatgca caaattgctt ttgtgtctgc taaagaacgc
     2581 acaagattac gtacattatt cccttacatc aatgaagcaa gtgaaaacca taaaaaacgt
     2641 gttcaaagtt caactttaaa tgaagttgtt actggtgcaa tttccatgaa ccctacacca
     2701 acagacaaag gtagacgttt gaatgtcttt tatgcaacac aagttgctat agaaccaccg
     2761 acatttgttg tatttgttaa tgatgtagaa ttaatgcatt tttcttataa acgctattta
     2821 gagaatcaaa tccgtgccgc ttttggtttt gaaggtacac caattcatat tatagctcga
     2881 aagagaaatt aacgattggg ggataacaat gactaaaatt accgtttttg gtatgggaag
     2941 ttttgggaca gcccttgcca atgttcttgc agaaaatgga catgatgttt tgatgtgggg
     3001 taaaaatcaa gatgctgttg atgaattaaa tacatgtcat acaaataaaa agtatttaaa
     3061 atacgcgaaa ttagatgtta acatcatcgc tacttcagat atgaccaaag caattcaatt
     3121 tgcagatatt tacttaatgg ctttacctac taaagcaatg cgagaagttg cttctcaaat
     3181 taatgataag ctgacctcta aaaagacttt tatacatgtt gctaaaggta ttgaaaatgg
     3241 gacgtttaaa cgtgtgtcag aaatgattga agattctatt tcacctgaat ataatgcagg
     3301 tattggcgtg ttgtcagggc caagtcatgc ggaagaagtt gtagtcaagc aaccaactac
     3361 agttgctgct tcatcaaaag ataaaagtgt aagtaaatta acgcaagatt tatttatgaa
     3421 tgattatttg cgtgtgtaca cgaatgatga cttgattggt gttgaacttg gtggtgcatt
     3481 gaaaaatatc atcgcagtag caagtggtat cgtagctgga attggctacg gtgataatgc
     3541 aaaagctgca ttaatgactc gtggcttagc ggaaattagt agattaggtg aaaagttagg
     3601 tgccgatcct atgacatttc taggtttagg tggtatcggt gacttaatcg ttacttgcac
     3661 atcaacacat tctcggaatt tcacattagg atataaactt ggacaaggtg aatcaatgga
     3721 tcaagcatta tctgaaatga atatggttgt tgaaggtatt tatacaacta aatcagttta
     3781 tcatttagct aaagaaaaaa atgtggatat gccaattaca aatgcattat atagagtatt
     3841 atttgaaaat atctcagtaa aagaatgcgt aaaagattta atggagcgcg ataaaaaatc
     3901 tgaataaaat gtgtattatt acacatatac ggctaataat tacgtaaaat gaatagaaat
     3961 ggcttaaatt caacgttttt gccacataaa tgattgcgat ttatgtaatg cttgtgttaa
     4021 agttttacca taatgatata aacatatcat tatcaaacct caggaggtga atgtctaatg
     4081 aacaaaacag atttaatcaa tgcagttgca gagcaagctg atttaactaa aaaagaagct
     4141 ggttcagcag tagatgctgt attcgaatca atccaaaact cacttgctaa aggtgaaaaa
     4201 gtacaattaa ttggtttcgg taactttgag gtacgtgaac gtgctgcacg taaaggtcgt
     4261 aaccctcaaa ctggtaaaga aattgatatc ccagcaagta aagttccagc attcaaagct
     4321 ggtaaagcat taaaagatgc tgtaaaataa ttttacttaa aaagccctga ataagggctt
     4381 tttattttgc ttttaatact tacaacctgt acataaattg taatgttctt ctaagttttt
     4441 aatctttgga acattcattg tttaa
//
LOCUS       DAMQWL010000159         4445 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.163, whole genome shotgun sequence.
ACCESSION   DAMQWL010000159 DAMQWL010000000
VERSION     DAMQWL010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4445
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.163"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(74..1954)
                     /gene="vraE"
                     /locus_tag="PF788_002513"
     CDS             complement(74..1954)
                     /gene="vraE"
                     /locus_tag="PF788_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide resistance ABC transporter permease
                     subunit VraE"
                     /protein_id="HDG6304754.1"
                     /translation="MTFNHIVFKNLRQNLKHYAMYLFSLFFSIVLYFSFTTLQFTKGV
                     NNDDSMAIIKKGALVGSIFLFIIIVIFLMYANHLFVKRRTREFALFQLIGLTRQNILK
                     MLALEQMIVFLITGVVGVLCGIAGAQLLLSIVSKLMSLSINLSIHFEPMALVLTIFML
                     IIAYVLILFKSALFLKRRSILSMMKDSIKTDATTAKVTTAEVISGVLGIAMIALGYYM
                     ATEMFGTFKALTMAMTSPFIILFLTVVGAYLFFRSSVSLIFKTLKKSKNGRVSITDVV
                     FTSSIMYRMKKNAMSLTIIAIISAVTVTVLCFAALSKSNTDQTLTSMAPNEFNVVATQ
                     DAKQFETKLSQQQITFSKNAYETITVDNVNDQVITLENGSDSGRTNSILSANNKLTGN
                     NAIITNTKSLPNIINIHLNKDLVVKGTKNETFRVTQEDKGKVYPLNLSFNSPVIEVSP
                     EKYQQLKTQNNVHTFYGYDIKQTSQKEKAQAIAKQFGDKVITYDEMKKEVDATNGILI
                     FVTSFLGLAFLVAAGCIIYIKQMDETEDELSNFRILKRIGFTHTDMLKGLLLKITFNF
                     GLPLLIAILHAVFAAIAFMKLMGNISFMPVIVVIVVYTLIYITFALIAFVHSNKLIKK
                     TI"
     gene            complement(1944..2702)
                     /gene="vraD"
                     /locus_tag="PF788_002514"
     CDS             complement(1944..2702)
                     /gene="vraD"
                     /locus_tag="PF788_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide resistance ABC transporter ATP-binding
                     subunit VraD"
                     /protein_id="HDG6304755.1"
                     /translation="MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSG
                     KTTLLNVLSSIDQISSGSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVK
                     ENIMLPLSVQKMSKATMEENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHK
                     PQIIFADEPTGALDSKSANDLLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDG
                     QIHTQLYQEGRSKQAFYEDIVHLQSVLGGVSNDI"
     gene            2985..3497
                     /locus_tag="PF788_002515"
     CDS             2985..3497
                     /locus_tag="PF788_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HDG6304756.1"
                     /translation="MEKGNQGIKWSSLIMGVLLLMLAVVIFTFPIENFYAITWLIGLF
                     VLINGVIQIVYRRKAKALVGGNQNWILFMGIVDILFGLLVIFNVGASSAFFIYMFAFW
                     FIFSSISGLFTFSGSGSLKLISVIFNLLGIVFGVILLFNPLMGIVFISTMIAIAFVFV
                     GVIYVVDALA"
     gene            complement(3631..4425)
                     /locus_tag="PF788_002516"
     CDS             complement(3631..4425)
                     /locus_tag="PF788_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylamine N-acetyltransferase"
                     /protein_id="HDG6304757.1"
                     /translation="MNIAKLENYLQIDSSRYNRPSIEALNYYATRFMLTVPFENIDVQ
                     NSKPISINIDALFNKIVHDKRGGFCYELNTFFKAYLQQKGFNPELMSATIHTPGGGRS
                     LNGSHASLVVSINDVFYVTDVGFGDLPLHAIPITSSEHTQPITDISGTFRAIFNNEDK
                     DIFYVQKFENDHWHTKYEAEFKPKQIEDFNSNIEYNQTHPDSIFVQHLLITMPQSFGR
                     ATMSENHLTLTRNGSSEKFDVTKDNYKHFLEKYFGLNVTINRIEKQ"
BASE COUNT         1421 a          654 c          758 g         1612 t
ORIGIN      
        1 ttaaatcaat taatagttat actgcattgc ttaaaatcaa aatatctaat gaagcatctt
       61 ttaatcgtaa gtgttaaatg gttttcttaa tcaatttgtt tgaatgtaca aaagcaatta
      121 aagcaaaagt aatgtaaatg agggtgtata caacaattac tacaataacc ggcatgaagg
      181 aaatattacc catcaatttc ataaatgcta ttgcggcgaa tactgcatgt aatatagcaa
      241 tcaataatgg taaaccgaag ttgaaagtaa tttttaataa taatccctta agcatatctg
      301 tatgcgtaaa gcctatgcgt tttaatattc tgaagttact tagttcatcc tcagtttcat
      361 ccatttgttt aatataaata atacatccag ctgctactaa aaatgctaat cctaaaaatg
      421 atgtaacaaa tattagaata ccgttagtag catcgacctc ttttttcatt tcatcatacg
      481 tgatgacttt gtctccaaac tgttttgcaa ttgcttgagc tttttccttt tgtgatgttt
      541 gtttaatatc atatccataa aaagtatgaa cgttattttg tgttttcaac tgctgatact
      601 tttcaggact tacttcgatg acaggtgagt tgaagcttag atttaaagga taaaccttac
      661 ctttgtcttc ttgtgtaaca cggaaagttt cattcttagt accttttact actaaatctt
      721 tgtttaaatg gatattaata atgttaggca gcgattttgt atttgtaatg atggcattgt
      781 tgcctgttaa cttgttattt gcacttaaaa tagaattcgt gcgacctgaa tcactaccat
      841 tttccaaagt aataacctga tcattaacat tatctacagt aatagtttcg taagcatttt
      901 tagaaaatgt aatttgttgt tggcttagtt tagtttcaaa ttgtttagca tcttgagtag
      961 cgaccacgtt aaattcattt ggtgccatag atgtaagggt ttgatctgta tttgatttag
     1021 ataatgccgc aaaacacaat acagttactg taactgcaga aataattgca atgatagtta
     1081 aagacatggc atttttcttc attctgtaca taatagacga tgtgaataca acatcggtaa
     1141 tagatacgcg tccatttttt gattttttca atgttttaaa aataagtgac acggaacttc
     1201 tgaagaataa ataggcgcct acaaccgtta aaaataaaat gataaacggt gatgtcatag
     1261 ccatagttag tgctttgaac gtaccaaaca tttctgtcgc catataatag cctagtgcaa
     1321 tcatagcaat acctaatacg cctgaaataa cctctgcagt cgttacttta gcagttgtgg
     1381 catcagtttt aattgaatct ttcatcattg ataagatact acgtcttttt agaaataaag
     1441 cacttttaaa taaaatcagt acatacgcaa taattagcat gaaaatagtt aaaacaaggg
     1501 ccataggttc gaaatgtatc gataagttaa tcgataacga catcaattta gatactatgg
     1561 aaagcaataa ttgtgcacct gcaatgccac ataatacacc gacaacacct gtgattaaaa
     1621 atacgatcat ttgttcaagt gctaacattt tcaaaatgtt ttgtcgtgtt aaaccaatca
     1681 actgaaatag cgcaaattca cgtgtacggc gttttacgaa taaatgattg gcatacatta
     1741 aaaagatgac aataatgata aataaaaata ttgatccgac taaagcacct ttcttaatga
     1801 tggccatcga gtcgtcatta tttacacctt tagtaaactg taaggttgta aaactgaaat
     1861 ataagacgat gctaaaaaat aatgaaaata aatacattgc ataatgtttt aagttttgtc
     1921 gtaagttttt gaaaacgata tggttaaatg tcatttgaga caccacctaa tactgattga
     1981 agatgtacaa tgtcttcata aaaggcctgt ttagaacgtc cttcctgata aagttgtgta
     2041 tgaatttggc catcttttag catgatgaca cgttctgcaa aacttgctgc aaccggatca
     2101 tgtgtaacca tgacaatagt tgtatcaaac gatttattca tttcttccaa acgttgtaat
     2161 aggtcatttg cacttttcga gtcgagtgcg cctgttggct catctgcaaa tatgatttgt
     2221 ggtttgtgaa caaatgctct cgctgctgca gttctttgtt gttgaccacc agataattcg
     2281 ctagggtatt tatttcctag gtcataaata cctaatgctg tcgtgatcgc tttataattt
     2341 tcttccattg ttgccttcga cattttttga acagataaag gtaacataat gttttcttta
     2401 acggttaatg tcggcagaat actgtaatct tggaagatga aacctaatga ttctttgcgg
     2461 aatttggcaa gtgctttttg attaagttta ttaagctctt gtccgttagc aatcacgcta
     2521 ccgctagaaa tttggtcaat tgaacttagt acatttaata aggttgtctt acctgatcca
     2581 gaaggcccca taatcgcaac gaattcgcct ttttgtatgt caaagttaat atctttaagt
     2641 gcttgaaatg tgtgcttttt accgtatgtt tttgaaacat gttgcactga taatatcgtc
     2701 atagtctcac tccttttgta tttaatttca ttttaaataa tgtttggagt agtagccttt
     2761 atctaaactt acaattcaat gaatgaacct tacagagttg aaagctatcg ctacttagta
     2821 gatttttgag tgaggataca gattcatcgt acatattaga caaaagcaat ggtgctttct
     2881 aagtgatgat gtttgtgtaa attgagaaaa gggaatttaa ttattgtata ataaattttt
     2941 tgtaaaaatt aaaagagggt tttatttgaa aggaattgat tgttatggaa aaaggaaatc
     3001 aaggtattaa atggtctagt ttaataatgg gtgtattatt attaatgttg gcagtcgtta
     3061 tttttacatt tccaattgaa aatttttatg ctattacctg gttgattgga ctgtttgtat
     3121 taattaacgg tgtgattcaa atcgtttacc gtagaaaagc aaaagcttta gtaggtggta
     3181 accaaaattg gattctgttt atggggattg tagatattct atttggtcta ttagttattt
     3241 ttaatgttgg cgcaagttca gcattcttta tttatatgtt tgctttttgg tttattttta
     3301 gttctatctc tggattattt acgttttcgg gtagtggtag cttaaaacta atttcagtga
     3361 tttttaattt attaggtatt gttttcggtg tcattttatt atttaatcca ttaatgggta
     3421 tcgtctttat ttcgacgatg attgctattg catttgtatt cgtaggtgtc atttatgttg
     3481 tagatgcact tgcttaagta aaatgaagcg gttcaaaaga agggtgtgac atgaagtttg
     3541 tgtcatatcc tttttgttgt gtttatgaag cataaaaaag gggcgctacc tacaataagt
     3601 aagatacgcc catattttta tattttacta ttattgtttt tcaatacgat taatagttac
     3661 atttagtcca aaatattttt ctaaaaaatg tttatagtta tctttagtga catcaaattt
     3721 ttctgagcta ccattccttg ttaaagttaa atgattttca gacattgtag cacggccaaa
     3781 tgattgtggc attgtaatta ataaatgctg tacaaatatt gaatctggat gcgtttgatt
     3841 atattcgatg ttgctattaa aatcttctat ttgtttaggt ttgaattcag cttcatattt
     3901 tgtatgccaa tgatcatttt cgaatttttg aacatagaaa atatccttgt cttcgttgtt
     3961 aaaaatagcg cggaatgtac cactgatatc agtaattggt tgtgtatgct cagatgaagt
     4021 aataggaatg gcatgtagag gtaagtctcc aaagccaaca tcagttacat agaatacatc
     4081 atttatagaa acaacaagtg aagcatgtga accgttcaga ctacgaccgc caccgggtgt
     4141 gtgaatagta gctgacatta attcaggatt aaatcctttt tgttgtaaat aggctttgaa
     4201 aaatgtattt aattcataac aaaaaccacc acgtttatca tgaacaattt tattaaaaag
     4261 tgcatcgata tttatagata tcggcttact attttgaaca tcaatatttt caaaaggtac
     4321 agttaacata aaacgtgttg cataataatt taatgcttca atactcggtc gattataacg
     4381 agatgaatca atttgtaaat aattctctaa cttcgcaata ttcataagca tagcgcctcc
     4441 tgtat
//
LOCUS       DAMQWL010000160         4419 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.164, whole genome shotgun sequence.
ACCESSION   DAMQWL010000160 DAMQWL010000000
VERSION     DAMQWL010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4419
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.164"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(8..181)
                     /locus_tag="PF788_002517"
     CDS             complement(8..181)
                     /locus_tag="PF788_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304758.1"
                     /translation="MWNFIKCVFKFVFSLVAITTLVAGVGVVAFAYIFKKDFEDIERK
                     TKEIISDIESKNN"
     gene            632..1672
                     /locus_tag="PF788_002518"
     CDS             632..1672
                     /locus_tag="PF788_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="linear amide C-N hydrolase"
                     /protein_id="HDG6304759.1"
                     /translation="MQQVTSDIMTFRGSHFELGVKTGKWLQQTPLLKNREKEWKKRVP
                     RFDIDVNETYQIFQTYAPQIWEELMGLQSILKMPTRQIILNFGHYRFTDLKESGCTVF
                     QGKDFMVRNYDYHPATYDGRYLLYQPTDSGLAQIGPVSRVTGRMDGMNESGLTMGYNF
                     MHRKKPANGFVCYMIGRLILENCRNVTEAIQLLKEIPHRSSFSYILMDKSLNHAIVEV
                     TPRSIDVRYDNICTNHFEILTHENRNYTKESKERLARTISQTNDNLDMTTAFKLFNNP
                     QYEIYSKLFKSWSGTIHTSMYQPETLTAYFTLGENAPPEIIDFKSWLDGQDLNITHFT
                     GNIDTDLTFANK"
     gene            complement(1729..2571)
                     /locus_tag="PF788_002519"
     CDS             complement(1729..2571)
                     /locus_tag="PF788_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HDG6304760.1"
                     /translation="MKKFFFIGLLVFVVFFTAATIIWFSYDKNKYGTKQYDKTFKDDA
                     FDNVSINLDSTELRIKRGNQFRVKYDGDNDILINIVDKTLKISDKRSKTRGYAIDMNP
                     FHENKKTLTIEMPDKMIKRLNLSSGAGSVRISDVDLENTSIQSINGEVVIKNSNLDAL
                     DSKTNNSSTYISKSNIKNSNIKVVIGTLQIDKSQIKQSIFLNDHGDIEFKNMPSKVDA
                     KASTKQGDIRFKYDSKPEDTILKLNPGTGDSVVKNKTFTNGKVGKSDNVLEFYTIDGN
                     IKVE"
     gene            complement(2568..3125)
                     /locus_tag="PF788_002520"
     CDS             complement(2568..3125)
                     /locus_tag="PF788_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001669025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HDG6304761.1"
                     /translation="MNKITYLNELETALDALPRHLRDQKMYEYERYFYEQELNGVDEG
                     EILKKLKDPQDVAAETKARSVIDYAESKPTFENISRAVAASLSLGILSIFVILIPVSI
                     VGLFVLALFLISLLLLFCPIILLASAISRGIVDSISNVFFAISYSGLGLVFIIVIFKI
                     LEYIYRLILKYLLWYIKTVKGSVRK"
     gene            complement(3185..3709)
                     /locus_tag="PF788_002521"
     CDS             complement(3185..3709)
                     /locus_tag="PF788_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001641610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304762.1"
                     /translation="MLYLNKYKERVTSVRIQNRWVVFILFLICSFGVLIGLYQYRHTK
                     TVDLSNLEINDIKLNEKFDKKGYEVNKKIKFDRFKFYNSKAHPDLTVKVREKDNIVKG
                     IILVRDEKIHTNFDGGIGSPINNAIENLGFGYKRTKVGNDFSSVKYIDRDNHLKLNLL
                     YQDLEIKRIEFFSK"
     gene            3830..4393
                     /locus_tag="PF788_002522"
     CDS             3830..4393
                     /locus_tag="PF788_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDG6304763.1"
                     /translation="MTNLETYFKNSQPLNEYIDGMKTNQDTVLSIYQSFELPEDDSRI
                     KKIKEMNYSKVLVITEDWCGDAMMNLPILKHISEALNLEVRVFHRDDDTKLIDQYLTN
                     GKSRAIPIFVFLNDQFEQETVWGPRANEVQKFVTDVRADKLPSKDHPDYADLEKETHL
                     VISNRYKTDASFWKAVYNSILNKLENK"
BASE COUNT         1592 a          751 c          569 g         1507 t
ORIGIN      
        1 aatgttatta gttattttta ctttcaatat cagaaataat ttctttagtt tttctttcaa
       61 tatcttcaaa atctttttta aagatataag caaatgctac tacaccaaca ccagcaacta
      121 atgttgtaat agcaactaag ctaaatacga atttaaacac acatttaata aaattccaca
      181 tctcaatttc acctctgtta aattaaatac ctatctacat ttcattatac tatcatatat
      241 agaataatca ttaaataaat acccactttc acgaaatata ttcatcaaat tatatagtga
      301 gcaagctaat gattattttc aaaaatgccg aggaacctct gtttcaacgt gacatgacct
      361 tatatgctaa tgttaacaat gactattatc gtgaatgcta acttaagatt gatatttatg
      421 ataagatgat tttaagtttt taactcaata tccccaccat ctataaaaat atgttttaac
      481 tgattgataa gtcttataca ccgagaaatc acctcaaaca attttatatt tcatttagta
      541 aaatataact ttatttaaca tgacattcaa tatacatacg attactattt atttacaata
      601 tattacaact aaaaagaaag gggccgatga tatgcaacaa gtgacatcag atatcatgac
      661 ttttagaggt tcacatttcg agttaggtgt taaaactggt aaatggcttc aacaaacacc
      721 tcttctaaaa aatcgagaaa aagaatggaa aaaacgtgtc ccacgtttcg atatagatgt
      781 aaatgaaact tatcaaatat tccaaacata cgcacctcaa atatgggaag aattaatggg
      841 actacaaagt atactcaaaa tgccaacacg ccaaattatt ttaaactttg gacattatcg
      901 ttttaccgat ttaaaagaaa gtggttgcac ggtctttcaa ggcaaagact tcatggttag
      961 aaattatgat taccaccctg caacttatga tggtcgctac ttactttatc aacctacaga
     1021 tagcggttta gctcaaattg gtcctgtatc aagggtaact ggaagaatgg atggtatgaa
     1081 tgagtcagga ttaactatgg gctataactt tatgcaccgg aagaaaccag caaatggttt
     1141 tgtatgttat atgattggtc gtctaattct tgaaaattgc cgaaatgtaa cagaagcaat
     1201 ccaattattg aaagaaatac cacacagaag ctcatttagc tacatactga tggacaaatc
     1261 attgaaccat gcaattgttg aagtgacacc gagatcaata gatgttcgtt atgataatat
     1321 atgtacaaat cattttgaaa tattaacaca tgaaaatcgt aattatacaa aagaatctaa
     1381 agaaagactg gcgcgtacca tttcacaaac taatgataat ttagatatga ctacagcatt
     1441 taagttattc aataatcctc agtatgaaat ttacagtaaa ctattcaaaa gctggtctgg
     1501 caccatccat acatcaatgt atcaacctga aacattaact gcatatttta cattgggaga
     1561 aaatgcgcca ccagaaataa tagatttcaa atcatggtta gatggtcaag accttaatat
     1621 cactcacttt actggcaata tagataccga cttaactttt gccaacaaat aaataacacc
     1681 gatattagag aaattatgct tcctaatatc ggtgcttaca tcctttattt attcaacttt
     1741 gatattacca tcaatcgtat aaaattctaa aacattgtcg cttttcccaa ctttaccatt
     1801 agtaaatgtt ttatttttaa ctacgctatc acccgttccc ggatttagct ttagtatagt
     1861 gtcttcaggt ttactatcat acttaaaacg aatatctcct tgtttagtag aagcttttgc
     1921 atctactttt gatggcatgt ttttaaattc aatgtcacca tgatcgttta aaaatatgga
     1981 ttgtttaatt tgactcttgt cgatttgtag cgtaccaata acaactttaa tattgctatt
     2041 tttaatgtta cttttactaa tataagtaga actattattt gtctttgaat ctagtgcgtc
     2101 aagatttgag tttttaataa ctacttcacc gttaatgctt tgaatacttg tgttctctaa
     2161 atcaacatca ctgattctaa cacttcctgc tccagatgat agatttaaac gtttaatcat
     2221 tttatcaggc atttcaatcg ttaacgtttt cttattctca tgaaaaggat tcatatcaat
     2281 tgcatatcct cttgtcttag accttttatc actaatcttc aacgtcttat ctactatatt
     2341 aattaatata tcattgtcac catcatattt aactctaaat tgattccccc gttttatacg
     2401 aagttctgta ctatccaaat ttatagatac attgtcaaaa gcatcgtctt tgaatgtttt
     2461 atcatattgt ttagtaccat atttgttttt atcatagctg aaccaaataa tggttgctgc
     2521 tgtaaaaaag acaacaaaca ctaaaagccc aataaaaaag aatttcttca ttttctaacg
     2581 cttcctttga cagttttaat ataccaaagt aaatatttta agattaaacg ataaatgtat
     2641 tctaaaatct taaatatgac aatgataaat actaatccta atcctgaata tgatatggca
     2701 aaaaatacat tactaattga gtccacaatt cctctggata ttgctgatgc taataaaata
     2761 attggacaaa acagcagcaa aagtgatatt aaaaataatg ctaatacaaa taatccaact
     2821 atagatactg gtataaggat gacaaaaata gatagaatgc ctaaacttaa tgaagcagca
     2881 acagctcttg aaatattttc aaatgttggt ttagattcag cataatcaat gacacttcta
     2941 gcttttgttt cagctgcaac atcttgtggg tcttttaact tctttaaaat ttccccttca
     3001 tcaacgccat taagttcttg ctcataaaaa taacgttcat attcatacat tttttgatct
     3061 cttaaatgcc taggtagcgc atcaagtgct gtttctaatt catttaaata agtaatcttg
     3121 ttcatatagg tcactcatcc caataaaatt attcattcgt tttttataac tttaagacct
     3181 aaagctattt actaaaaaat tcaatacgtt taatttctaa atcttgataa agtaagttta
     3241 attttaaatg gttatctcta tcaatatact ttaccgatga gaaatcattg ccaacttttg
     3301 ttcttttata tccgaatcca agattttcaa tcgcgttatt tatcggcgaa ccaattcccc
     3361 catcaaaatt agtatgtatc ttttcatctc ttactaatat tatcccctta acgatgttat
     3421 ccttttctct cactttaacg gtaagatcag ggtgagcttt actgttataa aatttaaaac
     3481 gatcaaactt aattttttta tttacttcat agcctttttt atcaaacttc tcatttaatt
     3541 taatatcgtt tatttcaaga ttagacaaat ccacagtttt cgtatgacga tattgatata
     3601 aaccaattaa tacaccaaaa gaacagatta aaaataatat aaacacaacc cagcgatttt
     3661 gaatacgcac tgatgtcacc ctttctttgt acttatttaa atatagcata aggtgcttcc
     3721 cgtttcatcc ttaacaaaaa ttaacaaaga atttgcaatt aatttatttc attacctttt
     3781 attactataa attggtataa tgttgtaaat gctaaaggag gtttttacaa tgacaaattt
     3841 agaaacttat ttcaaaaata gccaaccctt aaatgaatac attgatggaa tgaagacaaa
     3901 tcaagatacc gttctcagta tctatcaatc atttgagtta ccagaagatg attcacgcat
     3961 caaaaaaata aaagagatga attattctaa agtattagta attactgaag actggtgtgg
     4021 agatgcaatg atgaatctcc caattctaaa acacatcagt gaagcattaa atttagaagt
     4081 acgcgtgttc catagagatg atgatacaaa actgatcgat caatatttaa caaatggtaa
     4141 atcacgtgca attcctatct tcgtattctt gaatgatcaa ttcgaacaag aaacagtttg
     4201 gggaccaaga gcaaatgaag tccaaaaatt tgtaactgat gttcgtgctg ataaattacc
     4261 gagcaaagat catccagact atgcagattt agaaaaagaa acacacttag ttatatcaaa
     4321 ccgctataaa actgacgctt cattttggaa agcagtttat aattccatcc taaataaatt
     4381 agaaaataaa taaatttaca ataagacaaa ctttgaggt
//
LOCUS       DAMQWL010000161         4326 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.166, whole genome shotgun sequence.
ACCESSION   DAMQWL010000161 DAMQWL010000000
VERSION     DAMQWL010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4326
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.166"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            4..1041
                     /locus_tag="PF788_002523"
     CDS             4..1041
                     /locus_tag="PF788_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDG6304764.1"
                     /translation="MKTRCYDGKKWQYEFKYEGKRYRKKGFRTKREANSAGLDKLNEL
                     RSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINR
                     QVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSE
                     QEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFI
                     DERKTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSAC
                     RVNNISIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE
                     DKKTTKILESM"
     gene            1092..1922
                     /gene="sph"
                     /locus_tag="PF788_002524"
                     /pseudo
     CDS             1092..1922
                     /gene="sph"
                     /locus_tag="PF788_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000239616.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sphingomyelin phosphodiesterase"
     gene            complement(2160..3176)
                     /gene="lukG"
                     /locus_tag="PF788_002525"
     CDS             complement(2160..3176)
                     /gene="lukG"
                     /locus_tag="PF788_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-component leukocidin LukGH subunit G"
                     /protein_id="HDG6304765.1"
                     /translation="MIKQLCKNITICTLALSTTFTVLPATSFAKINSEIKQVSEKNLD
                     GDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGY
                     WNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGG
                     LTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTND
                     SDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQF
                     VVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHNVKFVKVLND
                     NEKK"
     gene            complement(3198..4253)
                     /gene="lukH"
                     /locus_tag="PF788_002526"
     CDS             complement(3198..4253)
                     /gene="lukH"
                     /locus_tag="PF788_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-component leukocidin LukGH subunit H"
                     /protein_id="HDG6304766.1"
                     /translation="MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVD
                     KSQQKDKRNVTNKDKNSTAPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYD
                     KNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNK
                     ISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHW
                     SVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLT
                     YLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKT
                     VKVVDKYSDDNKPYKEG"
BASE COUNT         1471 a          696 c          644 g         1515 t
ORIGIN      
        1 cgcatgaaaa cacgttgtta cgatggtaaa aaatggcaat atgaatttaa gtatgaagga
       61 aaaagatacc gtaagaaagg ttttagaaca aagcgtgaag ctaattctgc tggactagac
      121 aagttaaatg agttaagaag tggttttaat atagataact atataactct tgaagaatac
      181 ttcgaaaatt ggattaaaac gtataaacaa cctgttgtta aagaaaatac ctaccgtcat
      241 tatagaaatg cattacaaca tatacaaaaa cataaaatag gtaaaatgga gttatcaaag
      301 ataaatagac aagtttatca gaaattcata aacgattatt caaaagaaca cgcaaaagaa
      361 actataagaa aaacaaacgg tgctattcgg tcagctttag atgacgcatt atatgatggg
      421 cttattttta aaaatcccgc ttataaagtt aattataaag ccggaaaacc tacgaagtca
      481 gaacaagaaa aattcatctc ggtaactgaa tatgaaatac taaaagatca cgtcagaaag
      541 aagagaactc gttcatcatt agcgctattc ataatgattt gtacgggttg tcgtgtcagt
      601 ggtgcaagaa atataaagat tgagcatatc aaccaagtga aaaacactat atttattgac
      661 gagcgaaaaa ccgatacttc ccctagatat atcagtatcg ctaaatctga tatgaaacac
      721 attatggacg tcataagtac atttgcaatt agctatgatg gttacatttt caaagaagcc
      781 ggatctataa ttaaccttca tgctatcaat aatgctttga aatcagcctg tagagtcaat
      841 aatatatcaa ttattacatc gcacgcatta agacacactc attgttctta tttactagca
      901 aaaggtgtat ctatacatta catttctaaa agattaggtc ataaaaatat agcaataact
      961 acatccgtgt attctcattt gttagaagaa aaatttaatg aagaggacaa aaaaacaact
     1021 aaaattttag aaagtatgta atttagggac ccattaggga ctccaaaccc aataaatact
     1081 gttgttacaa ggtttctatg tatccaaact gggggcaata taaacgcgct gatttaatcg
     1141 gacaatcttc ttatattaaa aataatgatg tcgtaatatt caatgaagca tttgataatg
     1201 gtgcatcaga caaattatta agtaatgtga aaaaagaata tccttatcaa acacctgtac
     1261 tcggccgttc tcaatcaggg tgggacaaaa ctgaaggtag ctactcatca actgttgcag
     1321 aagatggtgg cgtagcgatt gtaagtaaat atcctattaa agaaaaaatc cagcatgttt
     1381 tcaaaagcgg ttgtggattc gataatgata gcaacaaagg ctttgtttat acaaaaatag
     1441 agaaaaatgg taagaacgtt cacgttatcg gtacacatac acaatctgaa gattcacgtt
     1501 gtggtgctgg acatgatcga aaaattagag ctgaacaaat gaaagaaatc agtgactttg
     1561 ttaaaaagaa aaatatccct aaagatgaaa cggtatatat aggtggcgac cttaatgtca
     1621 ataaaggcac tccagagttc aaagatatgc ttaaaaactt gaatgtaaat gatgttctat
     1681 atgcaggtca taatagcaca tgggaccctc aatcaaattc aattgcgaaa tataattacc
     1741 ctaatggtaa accagaacat ttagactata tatttacaga taaagatcat aaacaaccaa
     1801 aacaattagt caatgaagtt gtgactgaaa aacctaagcc atgggatgta tatgcgttcc
     1861 catattacta cgtttacaat gatttttcag atcattaccc aatcaaagcc tatagtaaat
     1921 agtgctcaac taactaataa cttgcttcgt tctaaaagga cgaagcgagt tatattgtta
     1981 aaatttgaat tgacttacat tttaataaaa tcatcttaac aactttaatt tttcattaat
     2041 acaagtcttt actctacact caaacaagat tcatacactg cacgtcataa taaatctatc
     2101 tattcaaata taaataaaag ttacctacta cattctatgt agcaggcaac ttttattact
     2161 tatttctttt cattatcatt aagtactttt acaaacttca cattatgtgt cttccaatca
     2221 acttcatata atgctgataa tttttcttct tttttatcta catggttttc accagaccaa
     2281 tagccccaga aaccatggcg attccaatct attttaaact catccattga tcttttataa
     2341 tgaacaacaa attgtgattt acctttgtct tttttatcat gtgacataac agctaaaaat
     2401 tctggattaa acccttcaga cacagttaca ggcattttgt ctttaggtgt gaaattatct
     2461 ttcgcccata aatttccatt tcgtgttaaa gaaaaaattt cacttttagt tctattatca
     2521 ctatcattag ttaattgtct cgtatggtca tgtcccatat tatttatcaa atgtgcttct
     2581 actttccaac ctacaccttt atgtgacgta gattgatcaa gtaatgtacg atatgatggt
     2641 tgttgataac taatcgtctc tgaataatta ctctcttttg taatatttcc agttaagcct
     2701 ccacgattaa tcgaaaaatc tccacctgtt ttataaccat acgtatattt aacttctctt
     2761 gattcatcct gattttttgg tgcaaagtca gtcacatttg tattgttgtt gtcatcaaca
     2821 ttttgaattg aaactgaata agatccaggc catcttaatg tactattcca ataaccattt
     2881 gggtctaaaa ttctcaaacc actaccaatt gtaccttttg ctttaataaa tactgtttct
     2941 ttatcataat taggttcagt taagaaatta aattgtaagc tttgagtaat atttttttga
     3001 ctatcacttg ttgtagctgt acgtgtatac attttagtat caccatcaag attcttctca
     3061 gaaacttgtt tgatttcaga attaatcttt gcaaatgaag tagctggtaa tacagtgaaa
     3121 gtagtcgata gtgctaacgt acaaattgtg atatttttac atagttgttt aatcattagt
     3181 aatccgccct ttcaatatta tccttcttta taaggtttat tgtcatcaga atatttatca
     3241 acgactttaa ctgttttatt tttccaatca acttcataag tgacaattaa tctttgacca
     3301 tctttatttt tttctaaaat tggaggtgca taatgtattc caggtctgtt tttcaaaata
     3361 tcttgatttc gtgtgtatgt tacttcaaat tgcgttttct catttgactt ttcattagat
     3421 aaataagtta aaaattctgg attaaagcca cttcttacta atgctgggta tctatatttt
     3481 gaagcaaagc ttagttcagg gttttctaca gtagcaattc tcgtatttct atagaataat
     3541 aattcatcat ttctattttt cacttctcca ccatacttca agtcattcgc aataactgac
     3601 cagtgtacat gccagttatt atttttaccg ctggcaattg tgtcataatt ttgctgatta
     3661 taactaatcg ttttggagta gctatttgat gaagttcgtc caataccttt tgttgaatcg
     3721 aatttaccac ctgagctata tgaaaatgta ctgtctactt ttgcagttga aattttattt
     3781 ttcggcaatt ggtctaatat ttcagtttta cgatttcttt ttacttgaaa atctacatgg
     3841 tactcacttg gatactttaa ccaatttgaa tttttttctt ctttatgaga ttcaaacttt
     3901 aaatttgaat gaattgagcc ttgtttttta acaagtaata cattcttgtc ataagttgga
     3961 tcatcgataa agtcgaattg taaattttgg agtatatttg ttttctcatc atatactgtt
     4021 tcagttcgtt ttgtgatttt accgtttttc ccaatatcat ccggtgctgt tgaattttta
     4081 tctttattag taacattacg tttgtctttt tgttgagact tatcaacatg ttctttctta
     4141 ttttggtctt gagagtcttt atgagctgaa tttgcttgag tcgttgctgc tgataacaat
     4201 aaaattgcac atgataatga tgacgctatt aaaacacgtt ttttattttt cattgttata
     4261 accttctttc gtatgattga tatttgttga tatgtatcga catgtgaata atatcacaaa
     4321 aacaga
//
LOCUS       DAMQWL010000162         4237 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.167, whole genome shotgun sequence.
ACCESSION   DAMQWL010000162 DAMQWL010000000
VERSION     DAMQWL010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4237
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.167"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            21..1775
                     /gene="eap"
                     /locus_tag="PF788_002527"
                     /gene_synonym="map"
     CDS             21..1775
                     /gene="eap"
                     /locus_tag="PF788_002527"
                     /gene_synonym="map"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular adherence protein Eap/Map"
                     /protein_id="HDG6304767.1"
                     /translation="MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHH
                     GYSKVHVPYAITVNGTSQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRL
                     SKQAKYTVYFKNGTKKVIDLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANY
                     QVPYTITVNGTSQNILSNLTFNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAK
                     YTVNFKNGTKKVIDLKSGIYTANLINSSDIKSININVDTKKHIENKAKRNYQVPYSIN
                     LNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKN
                     GGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSD
                     LKFTGDPRVGYKDISKKVKSVLKHDRGIGERELKYAKKATYTVHFKNGTKKVININSN
                     ISQLNLLYVQDIKKIDIDVKTGTKAKADSYVPYTIAVNGTSTPILSKLKISNKQLISY
                     KYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKD
                     IKKIDIDVKQYTKSKKNK"
     gene            1762..2076
                     /locus_tag="PF788_002528"
                     /pseudo
     CDS             1762..2076
                     /locus_tag="PF788_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669703.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MAP domain-containing protein"
     gene            complement(2400..3686)
                     /locus_tag="PF788_002529"
     CDS             complement(2400..3686)
                     /locus_tag="PF788_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDG6304768.1"
                     /translation="MNPLAQSLNEQLQQSNATAFTMLSDLGQNMFYPKGILSQSAEAK
                     STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRD
                     NPELSIDNMSLPIVTNALTHGLSLVGDLFVNQGDTILLPEHNWGNYKLVFNTRNGANL
                     QTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVDAIKA
                     LADKGTKVIAVVDDAYYGLFYEDVYTQSLFTALSNLNSNAILPVRLDGATKEFFAWGF
                     RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQN
                     IQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHDVDPEELRKHLIEKYSIG
                     VIALNATDIRIAFSCVEKEDIPHVFDSIAKAIDDLR"
     gene            3886..3984
                     /locus_tag="PF788_002530"
     CDS             3886..3984
                     /locus_tag="PF788_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304769.1"
                     /translation="MMWWQEGMMTLITGGLLIIFRLWLELKWKNKK"
BASE COUNT         1612 a          574 c          680 g         1371 t
ORIGIN      
        1 caaaaaagga gagataattt atgaaattta agtcattgat tacaacaact ttagcattag
       61 gtgttttagc atcaacaggt gcaaacttta ataataatga agcgtctgcc gcagctaagc
      121 cattagataa atcatcaagt tcgttacacc atggatattc taaagtccat gttccatatg
      181 caatcactgt gaacggtaca agccaaaata ttttatcaag cttaacattt aataagaatc
      241 aaaatattag ttataaagat ttagaggata gagttaaatc agttttaaaa tcagacagag
      301 gtattagtga tatagattta agactatcga agcaagcgaa atatactgtt tactttaaaa
      361 atggaacaaa gaaagttatc gatttgaaag caggtattta cacagctgat ttaattaata
      421 caagtgaaat taaagctatt aatattaacg tagatactaa aaagcaagtt gaagataaaa
      481 agaaagataa agcaaattac caagttccat acacaatcac tgtgaacggt acaagccaaa
      541 atattttatc aaacttaaca tttaataaga atcaaaatat tagttacaaa gatttagagg
      601 ataaagttaa atcagtttta gaatcaaata gaggtattac cgatgttgat ttaagattat
      661 cgaagcaagc gaaatataca gttaatttta aaaatggaac gaagaaagtt atcgatttga
      721 aatcaggtat ttacacagcg aatttaataa attcaagtga tattaaaagt atcaatatta
      781 acgtagatac aaaaaaacat atcgaaaata aagctaaaag aaactatcaa gttccatatt
      841 caattaattt aaatggtaca tctacaaaca ttttatcgaa tctttcattt tcaaataaac
      901 cttggacaaa ttacaaaaat ttaactagtc aaataaaatc agtactgaag catgatagag
      961 gtattagtga acaagattta aaatatgcta agaaagctta ttatactgtt tattttaaaa
     1021 atggtggtaa aagaatctta cagttgaatt caaaaaatta cacagcaaac ttagttcatg
     1081 cgaaagatgt taagagaatt gaaattactg ttaaaacagg aactaaagcg aaagcagaca
     1141 gatatgtacc atacacaatt gcagtaaatg gcacatcaac accaatttta tcagatttaa
     1201 aatttacagg tgacccacgt gtaggctaca aagatatctc taaaaaagtt aaatcagtat
     1261 tgaagcatga tagaggtatc ggggaacgtg aattaaaata tgcaaaaaaa gcaacttaca
     1321 cagtacattt taaaaatgga acgaaaaaag tgattaacat aaattcaaat attagccaac
     1381 tgaatctgct ttatgttcaa gatattaaaa agatagatat tgatgttaaa acaggaacta
     1441 aagcgaaagc ggatagctat gtaccatata caattgcagt aaatggcaca tcaacaccaa
     1501 ttttatcaaa acttaaaatt tcgaataaac aattaattag ttacaaatat ttaaatgaca
     1561 aagtgaaatc tgtattaaaa agtgaaagag gcatcagtga tcttgactta aaatttgcga
     1621 aacaagcaaa atatacagta tatttcaaaa atggaaagaa acaagtagtg aatttaaaat
     1681 cagacatctt tacacctaat ttatttagtg ccaaagatat taaaaagatt gatattgatg
     1741 taaaacaata cactaaatca aaaaaaaata aataaatcta ataatgtgaa attcccagta
     1801 acaataaata aatttgaaaa catagtttca aatgaatttg tgttctataa tgcaagcaaa
     1861 attacaatta atgatttaag tataaaactt aaatcagcaa tggcaaatga tcaagggata
     1921 actaaacatg acataggact tgctgaacgc gcagtgtata aagtgtattt taaaaatggt
     1981 tcgtcaaaat atgtagactt aaaaactgag tataaagatg aaagagtatt taaagcaact
     2041 gacattaaaa aggtagatat tgaacttaaa ttctaatctt taattttata ataaggcatc
     2101 tcacaatcgt ggggtgcctt ttacatttgt agagatgtga tgcttgaatg tttgaagtga
     2161 tttgccaaaa gttatataaa ttggttctat aataaatcgg actgatagaa aaagtttttt
     2221 acttttcatc tgtccgattt tttgattttg ttaggagaga tgtataaaac taattaggta
     2281 tagtgtttga caagttgctg aataaaatat atcttatgat actttgaaag aaggaataat
     2341 tttaaaaata aaaaaccaat aatccgagtc atactcatca gattattggt tgaaattaat
     2401 tatcttaagt catcaatcgc tttagcaatt gaatcaaata catgtgggat atcttctttt
     2461 tctacacagc taaacgcaat acgaatatct gttgcattaa gtgcaataac accaattgaa
     2521 tatttttcaa ttaaatgttt acgaagttct tcagggtcaa catcatgaac ttttattgcc
     2581 ataaagtatc cagagttaaa gtcataggct tgccaatgtg aatgatattg atcagcatag
     2641 acaacttcct tagtgacttc atagcgttct tttaatgttt gaatattttg ttcgatttct
     2701 ttatcgaatt gtttattatt ttttaataca tgcttaacag cgctttgtgt tggaagaggt
     2761 ccactagaaa tgttacttcg tataagacct tttactttgg cttctaatac ttctttagtt
     2821 gtttgatcag acgttccaaa tgtcataaac ccaacacgga atccccatgc gaaaaattct
     2881 tttgttgcac catctaaacg aacaggtaat attgcatttg aatttaaatt agataatgca
     2941 gtaaataatg attgagtata cacatcttca tagaataaac catagtatgc gtcatccaca
     3001 acagctataa cttttgtacc tttatcagct aatgctttaa ttgcatcgac gatggtagtc
     3061 acttctttat gcgtaggtgt gtaacctgtc ggattattag gataatttaa aatcataatg
     3121 actttatctt tattgtatga ttgtaaagct tctacaagtg aatcagtagt ataatgcccg
     3181 tctttatcaa agataggata tgtttgaagg tttgcaccat ttctcgtatt gaaaacaagt
     3241 ttgtaattac cccaattatg ctctggtaac aagatagtgt caccttgatt tacaaataaa
     3301 tcgccaacta aagataaacc atgtgttaat gcattcgtaa caattggtag tgacatgttg
     3361 tcgattgata gctctggatt gtcacgcaac attttttgtt gccataaatc acgtaattct
     3421 tcgatgcctt gtggtggcgc ataagggaat atttcatctg gagttaaatc attaaacatt
     3481 gcatctaaag atgatgcaaa catttttccg tctttgtttg tcgccatacc tatagttgca
     3541 ttatatgttg tactctttgc ttcagcagat tgagataaaa tgccttttgg ataaaacata
     3601 ttttgaccta agtcagataa cattgtaaag gcagttgcat ttgactgttg aagttgttca
     3661 tttaagcttt gggctaaagg attcattatt gcttaacctc tctttaaaaa aattgtatgc
     3721 ctatatatta tcttcaatta taccaaagat aaagtgttgt tggtgaatta acgaataata
     3781 tgtaaaatct gctgccaaaa tacgaacata tgttctgttt ttatgttaga ataggtgtag
     3841 gtcatccttc agtatgatac tttagtcgaa cggaggtgta gtgtaatgat gtggtggcaa
     3901 gaagggatga tgacacttat tacaggtggc ttactaatta tttttcgact ttggttagaa
     3961 ctgaaatgga aaaataaaaa atgatcctac acacataaat aaccccaagt ctgctggtac
     4021 cagacttggg gttgtgtagt ataattctgt ggatacactt aaataatatc attgaacaca
     4081 atatatcgca atcaataatc attttgattg aatggttttg ttgcgctatt ttagttgaaa
     4141 gtgattagta ccttgaactt ttgaaattca ataacttatt aaaaaaattt atatttgtta
     4201 taatgtcgat gttgaggtga aataaattga aacatct
//
LOCUS       DAMQWL010000163         4132 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.169, whole genome shotgun sequence.
ACCESSION   DAMQWL010000163 DAMQWL010000000
VERSION     DAMQWL010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4132
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.169"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            12..1013
                     /gene="argF"
                     /locus_tag="PF788_002531"
     CDS             12..1013
                     /gene="argF"
                     /locus_tag="PF788_002531"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDG6304770.1"
                     /translation="MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLK
                     NKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYD
                     GIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTY
                     VGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDI
                     DQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPS
                     FHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF"
     gene            1036..1968
                     /gene="arcC"
                     /locus_tag="PF788_002532"
     CDS             1036..1968
                     /gene="arcC"
                     /locus_tag="PF788_002532"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HDG6304771.1"
                     /translation="MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVIS
                     HGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDK
                     QVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVP
                     SPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLG
                     ANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAA
                     ISFIENNPKGSVLITSLNELDAALEGKVGTVIKK"
     gene            2140..3696
                     /locus_tag="PF788_002533"
     CDS             2140..3696
                     /locus_tag="PF788_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000428224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcC family protein"
                     /protein_id="HDG6304772.1"
                     /translation="MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAY
                     SKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTY
                     ERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKT
                     KGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASS
                     VGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPK
                     ASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVM
                     ASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEG
                     MISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTV
                     GIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGG
                     VLITQVLIYS"
BASE COUNT         1409 a          569 c          815 g         1339 t
ORIGIN      
        1 agttgttatt aatgaaaaat ttacgaaaca gaagtttttt aactttatta gacttttcac
       61 gacaagaggt agaattctta ttaacactct ccgaggattt aaaacgtgct aaatatattg
      121 gcactgaaaa gcctatgtta aaaaataaaa atattgcact gttatttgaa aaagattcta
      181 caagaacgcg atgtgcattt gaagttgcag cgcatgatca aggtgcaaat gtaacttatt
      241 taggcccaac tggatcacaa atgggtaaaa aagaaacaac taaagatact gcacgtgtgc
      301 ttggtggaat gtatgatggc attgaatacc gtggtttttc acaaagaaca gtagaaactt
      361 tagctgagta ttcaggcgta ccagtgtgga atggtttaac tgatgaagat catcctactc
      421 aagttcttgc tgatttctta acagcaaaag aagtcttaaa aaaagattat gcagatatta
      481 actttacata tgttggagat ggtcgtaata acgttgcaaa tgcattaatg caaggtgctg
      541 ccattatggg tatgaacttc catttagttt gtccaaaaga attaaatcca acagatgaat
      601 tattaaatcg ctgtaaaaat attgccgctg aaaatggtgg caacatatta atcacagatg
      661 atattgacca aggtgtaaaa ggttcggatg taatttacac tgatgtttgg gtatcaatgg
      721 gtgaacctga tgaagtatgg aaagaacgac ttgaattatt gaaaccatat caagtaaata
      781 aagaaataat ggataaaact ggtaatccaa atgttatttt tgagcattgc ttaccatctt
      841 tccataatgc tgatacgaaa ataggtcaac aaatttttga aaaatatggt attcgagaaa
      901 tggaagttac agatgaagta ttcgaaagta aagcttcagt tgtattccaa gaagctgaga
      961 acagaatgca tacaatcaaa gcagtcatgg ttgctacatt gggtgaattt taaatgatat
     1021 aaggaagtga atatgatggc gaaaatagta gtagcattag gtggtaatgc tttaggaaaa
     1081 tcacctcaag aacaactcga gcttgttaaa aatactgcga aatcattagt aggattaata
     1141 acaaaaggac atgagattgt tattagtcat ggtaatggac cacaggttgg aagcattaat
     1201 ttgggactta actatgctgc agaacataac caaggtccgg catttccatt tgctgaatgt
     1261 ggcgcaatga gtcaagctta catcggctat caattacaag aaagcttaca aaatgaattg
     1321 cattctattg gaatggataa acaagtggta acactagtga cacaagttga agttgatgaa
     1381 aatgatccgg catttaacaa tccttcaaaa ccaattgggt tattttacaa caaagaagaa
     1441 gctgaacaaa ttcaaaaaga aaaaggattt atatttgttg aagatgctgg aagaggatat
     1501 agacgcgttg ttccttcacc acaacccatc tctattattg aattagagag tattaaaaca
     1561 cttattaaaa atgatacact cgttattgct gctggtggtg gaggtatacc agtaattaga
     1621 gagcaacatg atggttttaa aggtattgat gcagttatag acaaagataa aacaagtgcg
     1681 ttgttgggtg ctaatattca atgcgatcaa ttgattattt taacagcaat tgattatgta
     1741 tatattaatt ttaacactga aaaccaacag cctttgaaaa caacaaatgt tgatgaatta
     1801 aaacgatata tagacgaaaa tcaatttgca aaaggaagta tgttaccaaa aattgaagca
     1861 gccatatcat ttattgaaaa caatccaaaa ggaagtgtgc ttataacatc attaaatgaa
     1921 ttagatgctg ccttagaggg taaagtaggt actgtgatta aaaagtaatt gaattgaaac
     1981 gcttttcaat tactatatgt caaatgcatg atttttatta tttatgtgca ccccctgaaa
     2041 ataatgcctc tattttgatg cggggtgcac tttcttaatt tatatttata aaatctttaa
     2101 ggtagaaatg ctaggttaaa tgtcgaagga gatgaaaccg tggaaaatac aattaatgaa
     2161 agtgaaaaga aaaaacgatt taaattaaaa atgccaggtg catttatgat tttattcatt
     2221 ttaacggttg ttgcagttat agcaacatgg gttattcctg ctggtgcata ttctaaactt
     2281 tcttacgaac cttcatccca agaactaaag atagttaacc ctcataacca agtgaaaaag
     2341 gttccgggta cgcaacagga actagacaaa atgggggtta aaattaagat tgaacaattt
     2401 aaatcaggtg caattaataa gccggtatca attccgaata cttatgaaag attaaagcaa
     2461 catccagctg gaccagaaca aataacaagt agcatggttg aaggtacgat agaagcggtc
     2521 gatatcatgg tattcattct tgtactaggg ggacttattg gcgtagttca agccagtggt
     2581 tcttttgaat cgggattgtt agctttaacg aagaaaacaa aagggcatga atttatgcta
     2641 attgtgtttg tatcaatact aatgattatc ggcgggacat tatgtggtat tgaagaagaa
     2701 gctgtagcat tttatccgat tttagtccct atatttatag cgttaggata cgattctatc
     2761 gtttcagttg gtgccatatt ccttgccagc tctgtcggta gtacattttc aactattaac
     2821 ccgttctcgg ttgtaattgc ctctaatgcc gctggtacaa cttttacgga tggcttgtat
     2881 tggagaatag gtgcttgtat tgtcggtgcg atttttgtta ttagttattt atattggtac
     2941 tgtaaaaaaa ttaaaaacga tcctaaagcg tcatattctt atgaagacaa agatgctttt
     3001 gaacagcaat ggtctgtatt aaaagatgac gatagtgccc attttacttt gcgtaagaag
     3061 ataatcctta cattatttgt actaccattt ccaattatgg tatggggagt tatgacgcaa
     3121 ggttggtggt tcccagttat ggcttcagca tttttaatat ttacaattat aataatgttt
     3181 attgctggga caggtaaatc tggattggga gaaaaaggaa ctgtagatgc atttgtcaat
     3241 ggtgcatcaa gtttagtagg tgtatcttta attattggtt tagctcgagg tattaattta
     3301 gtgttgaatg aaggtatgat ttcagataca atcttacact tttcatcatc tttagttcaa
     3361 catatgagtg gaccattatt tatcatcgta ttactattta ttttcttctg tttaggtttt
     3421 atcgtgccat catcttctgg cttagcggta ttatcaatgc ctatctttgc accactagct
     3481 gatacagtag gtataccaag attcgtcatc gttacgacat atcaatttgg tcaatatgcg
     3541 atgttattct tagcgccgac tggacttgtt atggccacac tacaaatgtt aaacatgcga
     3601 tattcacatt ggttccgatt tgtatggccg gtagttgctt ttgtattgat tttcggtggc
     3661 ggagtactaa ttacgcaagt actaatttat tcataatttg aaatgctata ttataaaaaa
     3721 tactaatggg gttttatgca tctcgtaggt ttgtagaaat actaaactaa gcgaggtgca
     3781 ttattatttt tgattaagaa aataatgacg gtaatgataa cactagtaag taattgatac
     3841 aatgctctat ttaataatga tatttttaaa atttgttttt aatgtaatgt tagatctatg
     3901 gtatattata tttatcgtgg taaatatgta tttgctgtaa acagtttttg taacacatga
     3961 tacatatggt tgtgaaaata gcatatataa aggatggcta taaatgacac atttgacaaa
     4021 ggttttagat acactaactg gaatatgcgt agtattatta tttagtaaat attttgtggc
     4081 gtatgcaaat atggtgtttg attggaattt aagatggtat ttgctagaaa ac
//
LOCUS       DAMQWL010000164         4044 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.170, whole genome shotgun sequence.
ACCESSION   DAMQWL010000164 DAMQWL010000000
VERSION     DAMQWL010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4044
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.170"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            28..711
                     /gene="isdC"
                     /locus_tag="PF788_002534"
     CDS             28..711
                     /gene="isdC"
                     /locus_tag="PF788_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme uptake protein IsdC"
                     /protein_id="HDG6304773.1"
                     /translation="MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTN
                     DTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTS
                     EFEVSKLNGKIDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKN
                     SASGSDKGSDGTTTGQSESNSSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFV
                     RKKSKGNVE"
     gene            711..1787
                     /gene="isdD"
                     /locus_tag="PF788_002535"
     CDS             711..1787
                     /gene="isdD"
                     /locus_tag="PF788_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated surface determinant protein IsdD"
                     /protein_id="HDG6304774.1"
                     /translation="MRNVKQIATKSIIAIISLGILTYTTMIGSVLADEIKYPSAKFNQ
                     PEAKDKTELTTSIFDEKIKENKALELLIFNQENKNVTEEQQLVDEKAQLISDMTGKIY
                     LQVKLKGQIDKEQLVFQNDKNEEFPFVIKDEKDDTIVRILIEQHMDKINMHVKTLAEK
                     KNLDNKEMVYSIHFKEKKVQHDDAKEVPSKHQNQENNQDQLKKDIDDKKDSQKSDTKE
                     RRTSLFTEKGLNDIPVQKDKVQQDSNKKIENERPKASGTLKVENSPPTIKKVENNHKE
                     QPKHKDEKSKKEKKKVVEKEKALPAFNRDDDSKNSSQLSSDIKELDEPNHKKQYMLFA
                     AGIVLATILLISAHLYSRKRGNQV"
     gene            1784..2662
                     /gene="isdE"
                     /locus_tag="PF788_002536"
     CDS             1784..2662
                     /gene="isdE"
                     /locus_tag="PF788_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006190048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     IsdE"
                     /protein_id="HDG6304775.1"
                     /translation="MRIIKYLTILVISVVILTSCQSSSSQESTKSGEFRIVPTTVALT
                     MTLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDE
                     MQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKA
                     AKQKKHPKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLN
                     INPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGITANVDA
                     DKAMTQLYDLFYKDKK"
     gene            2675..3640
                     /gene="isdF"
                     /locus_tag="PF788_002537"
     CDS             2675..3640
                     /gene="isdF"
                     /locus_tag="PF788_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000594537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin ABC transporter permease protein IsdF"
                     /protein_id="HDG6304776.1"
                     /translation="MIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTG
                     SNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRA
                     LCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLE
                     ILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGF
                     NIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGA
                     WLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRNRI"
     gene            3702..>4044
                     /locus_tag="PF788_002538"
     CDS             3702..>4044
                     /locus_tag="PF788_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SrtB family sortase"
                     /protein_id="HDG6304777.1"
                     /translation="MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQ
                     KFQMLMSKHQEHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFER
                     EHRRKGSIFMDF"
BASE COUNT         1590 a          541 c          701 g         1212 t
ORIGIN      
        1 agcaatcata aaaaggagga ttatgttttg aaaaatattt taaaagtttt taatacaacg
       61 attttagcgt taattatcat catcgcgaca ttcagtaatt ctgcaaatgc cgcagatagc
      121 ggtactttga attatgaggt ttacaaatac aataccaatg acacgtcaat tgctaatgac
      181 tattttaata aaccggcaaa gtacattaag aaaaatggta aattgtatgt tcaaataact
      241 gtcaaccaca gtcattggat tactggaatg agtatcgaag gacataaaga aaatattatt
      301 agtaaaaaca ctgccaaaga tgaacgcact tctgaatttg aagtaagtaa gttgaacggt
      361 aaaatagatg gaaaaattga cgtttatatc gatgaaaaag taaatggaaa gccattcaaa
      421 tatgaccatc attacaacat tacatataaa tttaatggac caactgatgt agcaggtgct
      481 aatgcaccag gtaaagatga taaaaattct gcttcaggta gtgacaaagg atctgatgga
      541 acgactactg gtcaaagtga atctaatagt tcgaataaag acaaagtaga aaatccacaa
      601 acaaatgctg gtacacctgc atatatatat gcaataccag ttgcatcctt agcattatta
      661 atcgcaatca cattgtttgt tagaaaaaaa tctaaaggca atgtggaata atgagaaatg
      721 ttaaacaaat tgctacaaaa tctattatag ctattattag cttaggtata cttacatata
      781 caacaatgat tggtagcgtg ttggctgatg agataaaata tccatcagcc aaatttaatc
      841 aacctgaagc aaaagataaa acagaattaa ctacatcaat ttttgatgaa aagataaaag
      901 agaataaagc gttagagtta ctaattttta atcaagaaaa taaaaatgta actgaggaac
      961 aacaactagt tgacgaaaag gcgcaattga tttcagatat gactggtaaa atttacttgc
     1021 aagtaaagct aaaaggtcaa atagataaag aacaacttgt ttttcaaaat gacaaaaatg
     1081 aagaatttcc ttttgttata aaagatgaaa aggatgacac aatagtaaga attttaattg
     1141 aacagcatat ggataaaatc aatatgcatg ttaaaacgtt ggctgaaaag aaaaatctag
     1201 ataacaaaga aatggtgtat tctattcatt ttaaagagaa aaaagtacaa catgatgatg
     1261 caaaagaagt gccttcaaaa catcaaaatc aagaaaataa tcaagatcag cttaaaaaag
     1321 atattgatga caaaaaagat agtcaaaaat cagatactaa ggaaagacgt actagccttt
     1381 ttactgaaaa aggattaaat gatattcctg tacaaaaaga taaagtgcaa caagacagta
     1441 ataaaaagat tgaaaatgag cgacctaaag catcaggtac attaaaagtt gaaaatagcc
     1501 ctccaacaat aaaaaaggtt gaaaataatc acaaagagca accgaaacat aaagatgaaa
     1561 aatcaaaaaa ggaaaagaaa aaagtagttg aaaaagaaaa agcgttacca gcttttaata
     1621 gagatgatga tagcaagaat agtagtcaat tatctagtga tattaaagaa cttgatgaac
     1681 caaatcataa aaagcaatat atgttatttg cagctggcat tgtgttagca actattttac
     1741 ttatttcggc acatttatac agcagaaaga gaggtaacca agtttgagaa tcataaagta
     1801 tttaaccatt ttagtgataa gcgtcgttat cttaaccagc tgtcaatctt ccagttctca
     1861 agaatcaact aaatccggcg aattcagaat cgtaccaaca actgttgcat tgacaatgac
     1921 attggacaaa ttggatttac caattgtcgg caaacccacg tcatataaga cattgcctaa
     1981 tcgttataaa gatgtaccgg aaattggtca accaatggag ccgaatgttg aagctgttaa
     2041 aaagttaaaa ccaacacatg ttttgagtgt gtcaacgatt aaagatgaaa tgcaaccatt
     2101 ttacaaacaa ttaaatatga aaggctactt ttatgatttt gatagtttaa aagggatgca
     2161 aaagtcgatt acacaattag gtgatcaatt taatcgtaaa gcacaagcaa aagaattaaa
     2221 tgaccattta aattctgtaa agcaaaaaat tgaaaataaa gcagctaaac aaaagaaaca
     2281 tcccaaagta ttaatattaa tgggtgtacc gggtagctat ttagtagcaa ctgataaatc
     2341 atatattggt gatttagtta aaatagcagg tggagaaaat gttattaaag tgaaagatcg
     2401 tcaatatatt tcgtctaata ctgaaaattt gttgaatatc aatccagata ttattttacg
     2461 attaccacac ggaatgcctg aagaagttaa gaaaatgttt caaaaagaat ttaaacaaaa
     2521 tgatatttgg aaacatttta aagctgtgaa aaataatcat gtttatgact tagaggaagt
     2581 gccattcggt attacagcaa atgttgatgc tgataaggca atgactcaat tatatgattt
     2641 attttataag gataaaaaat agtgagttga tatgatgata aaaaataaaa agaaactact
     2701 atttttatgt ttgttagtca ttttaatcgc aactgcttat atttcgtttg taaccggtac
     2761 aattaaattg tcatttaatg acctatttac aaaatttaca actggtagca atgaagcagt
     2821 ggattcaatc attgatttgc gattgccacg tatattaatt gcattgatgg ttggcgcaat
     2881 gttagcagtt tctggagcat tattacaagc agcactacaa aatcctttgg cagaggcgaa
     2941 tatcattggc gtttcctcag gtgcacttat aatgagagca ctttgtatgt tgtttattcc
     3001 acaattgtac ttttacttac cattattaag ttttattgga ggtttaatac catttttaat
     3061 aattatattg ttgcattcta aatttagatt caatgctgta agtatgatat tagtaggtgt
     3121 tgcgttattc gtattattaa atggtgtttt agaaatttta actcaaaacc ctttaatgaa
     3181 aattcctcaa ggcttaacaa tgaaaatatg gagcgacgta tacatattag cagtatcagc
     3241 attattggga ttaatattaa cattactatt gtcccctaaa ttgaatttac taaatttaga
     3301 cgacatacaa gcgcgaagta tcggttttaa tattgatcgt tacagatggt taacaggttt
     3361 attagcagta tttttagcaa gtgcaactgt tgcgattgtt ggacaactag cctttttagg
     3421 tattattgtg ccacatgtgg ttagaaagct agttgggggc aattacagag tacttattcc
     3481 gttttctaca gttattggtg catggctatt gttagtggct gatttattag gacgagtgat
     3541 acagcctcct ttagaaattc cagccaatgc tattttaatg attgtcggtg gtccaatgct
     3601 aatttactta atttgtcaaa gtcaacgaaa tcgaatctaa aacggtacaa caactggttt
     3661 agtgatgact gaagaaacgt cgttaataaa agaggatttt tatgagaatg aagcgatttt
     3721 taactattgt acaaatttta ttggttgtaa ttattatcat ttttggttac aaaattgttc
     3781 aaacatatat tgaagacaag caagaacgcg caaattatga gaaattacaa caaaaatttc
     3841 aaatgctgat gagcaaacat caagaacatg tgagaccaca atttgaatca cttgaaaaaa
     3901 taaataaaga cattgttgga tggataaaat tatcaggaac atcattaaat tatccagtac
     3961 tacaaggtaa gacaaatcac gattatttaa atttagattt tgagcgagaa catcgacgta
     4021 aaggtagtat ttttatggat ttta
//
LOCUS       DAMQWL010000165         4020 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.171, whole genome shotgun sequence.
ACCESSION   DAMQWL010000165 DAMQWL010000000
VERSION     DAMQWL010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.171"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            63..1445
                     /locus_tag="PF788_002539"
     CDS             63..1445
                     /locus_tag="PF788_002539"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HDG6304778.1"
                     /translation="MKVSKFGGSSVSNATQIKKVLNIVNSDPERKIVIVSAPGKRHDN
                     DIKTTDLLIRLYEKVINHLDYHDKKREIIQRYDDIVKELQMDESILRTIDVTLEHYIN
                     QLKNEPKRLLDALLSCGEDFNAQLIALYNNSQGIPTKYISPKEAGIFVTDVPQEAQIL
                     DSAYSEIKKLRDYDEKLIIPGFFGVSHEGYIVTFPRGGSDITGAIISSGVRATIYENF
                     TDVSGIYKANPNIIKDPELIEEITYREMRELSYAGFSVFHDEALQPLYKDRIPVVIKN
                     TNRPQDKGTFIVHDREINAKNVISGISCDKDFTVINIKKYLMNRQVGFTRKILGVLED
                     NNISFDHMPSGIDTISIVMRSKQIQNKETKVLNEIRQKCDVDELSIEHDLAILMIVGE
                     GMNKVIGTANKITHALAESKINLKMINQGASEISMMFGIHVDDAEKAVLSTYEFCYHG
                     VALKNLCDKN"
     gene            complement(1499..2074)
                     /locus_tag="PF788_002540"
     CDS             complement(1499..2074)
                     /locus_tag="PF788_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304779.1"
                     /translation="MNAKEQLVDNLMKTSSQLFKFHGEVAMQLFLNDELKLPSIVEIC
                     VERKRLSDIVKVIPQSYALLYIDKQDQAIAKEDLSLSKIAKVYVQYDDTTIMSIFVYD
                     VVNDEWIFRLDPNIRIPKSNIYFHSLNWDVDYIKPEIVLMYDLMQHHQYHHYSNYKRV
                     IDALSYYQFFILKFVVGEQRIKDAIQRTINN"
     gene            2405..3259
                     /locus_tag="PF788_002541"
     CDS             2405..3259
                     /locus_tag="PF788_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304780.1"
                     /translation="MSFYVVLIIIIVALIGILVLNQRYSNSKIDTEVYARKQLIKKNK
                     ALSAENAELRSQMLSSNNDVGHHAYKNAKRELRKILDSYLENGKLKYYDIIVTSNLAT
                     KHPFFEYARSFDFIIVSDIGLINVDVKSWGEKTFYHFDVPDEHDTEISNSNIEKVVGH
                     YISQQYHDQFNSSRKSIYTFTETVQPNRVIYDFYDYDPYQLAANNAKALKDHIEQNFN
                     FKVQSTGVIYFSDGTVNIIQGSEERDKYVDTVSTKSSLRRIISEAIELSKHPLNKEQV
                     DQITAIFK"
     gene            complement(3402..3935)
                     /locus_tag="PF788_002542"
     CDS             complement(3402..3935)
                     /locus_tag="PF788_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDG6304781.1"
                     /translation="MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLN
                     GKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKT
                     LTNQDVYLEYDKEKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKYFSPNGKYRNVF
                     IEAQNKAKQQKLNIWSK"
BASE COUNT         1426 a          615 c          590 g         1389 t
ORIGIN      
        1 atcattctta cttacaaaac tgaatacaat tttctgattt tttagaaagg ttggcatgca
       61 ctatgaaagt ttccaaattc ggtggtagct ccgtctccaa tgctactcaa attaaaaagg
      121 ttttaaatat tgttaattct gatccagagc gaaagattgt tatcgtttct gctccaggta
      181 aaagacatga taatgatatt aaaacaactg atttgttaat cagattatat gaaaaggtca
      241 ttaatcatct tgattatcat gataaaaaaa gagaaattat tcagcgttat gatgatattg
      301 taaaagaatt gcaaatggat gaaagtattt tacggacgat agatgtgact ttggaacatt
      361 atattaatca attaaaaaat gaaccaaaga gactattaga tgcattactt tcttgtggtg
      421 aagattttaa tgcgcaattg atagctttat ataataatag tcaaggtata ccaacaaaat
      481 atatatcacc gaaggaagcg ggtatttttg ttactgacgt cccacaagaa gcacaaatat
      541 tagatagtgc ttactctgaa attaaaaaat taagagatta tgatgaaaaa ctaattatcc
      601 caggattttt tggcgtatct catgaaggat atatagttac atttccacgt ggcggatcag
      661 atataactgg cgccatcata tcaagtggtg ttagagccac aatttatgaa aatttcaccg
      721 atgtgtctgg tatttataaa gctaatccaa atatcatcaa agatcctgaa ttaatcgaag
      781 aaatcactta tcgagaaatg cgtgaattat cttatgctgg ttttagtgtt ttccatgatg
      841 aagccttaca accactttat aaagatcgca tccctgtggt gattaaaaat acgaaccgcc
      901 ctcaagataa gggtacattt atagtgcatg atagagaaat aaatgcgaaa aatgtgatta
      961 gcggtataag ttgtgataaa gattttaccg ttattaatat caaaaagtat ttaatgaata
     1021 gacaagtcgg ctttactaga aagatattag gtgtcttaga ggataataat atttcatttg
     1081 atcatatgcc ttcaggtatt gatactatca gtatcgttat gcgttcaaaa caaattcaaa
     1141 ataaagaaac aaaagtatta aatgaaattc gtcaaaaatg tgatgttgat gagctaagta
     1201 ttgagcatga tttagcaata ttaatgattg tcggcgaagg tatgaataaa gtcatcggta
     1261 ctgcaaataa aattacacat gccttagctg aatcaaaaat taacttaaaa atgattaacc
     1321 aaggtgcttc ggaaatctcg atgatgtttg gaattcatgt agatgatgct gaaaaagctg
     1381 tattatctac atatgagttt tgctatcacg gggttgcatt aaaaaacttg tgtgataaaa
     1441 actaatataa aagcaattcg taacacatgt attcaactgc gttatgaatt gctttttctt
     1501 aattatttat tgttctctgg attgcatcct taatacgttg ctcacctact acaaatttta
     1561 aaataaaaaa ttgatagtag cttaatgcat ctatgactcg tttataattg gaataatgat
     1621 gatactgatg gtgttgcatt agatcataca ttagaacgat ctccggttta atataatcca
     1681 catcccaatt taaactatgg aagtatatgt tactcttagg tatacgtata ttcggatcca
     1741 atctaaaaat ccattcatcg tttactacat cataaacgaa aatactcatt attgttgtat
     1801 catcatattg cacataaact tttgcaattt ttgaaagtga taaatcttct ttagctattg
     1861 cttgatcttg cttatctatg tatagtaacg catatgattg cggaataact ttcacaatat
     1921 cacttaaacg cttacgttcc acgcatattt caacaataga aggtaatttt aattcatcat
     1981 ttaagaaaag ctgcatggca acttcaccgt gaaatttaaa taattgcgat gatgttttca
     2041 ttaaattgtc cactaattgt tctttagcat tcatttcatt cactctcaaa tacacctcct
     2101 aagcaagcgc tttcacaaat atcattatac attttaaaat taatgaattc aatcttcaaa
     2161 atactatgag tgacctaatt ctgtcattta aatgaccgtt ataacataaa ttcgacataa
     2221 acttgaattc acgaatcttt cacgtcatat tcattgaaca tcaatatctg tcagtttata
     2281 atttgattat aacaatgatg aactaaaatc aactaataaa aatgtgggaa attgaataac
     2341 aattaatctt tattaattat tattgtatac aaagttaaag aagtcaaaaa ggattggtga
     2401 aaaaatgtct ttttatgttg tacttatcat tatcattgta gcattaattg gtatattagt
     2461 tttaaatcaa aggtatagta atagtaaaat agataccgaa gtttatgcaa gaaagcaact
     2521 tattaaaaag aacaaagcat taagtgcaga aaatgctgaa ttaagaagtc aaatgctgag
     2581 ttctaataat gatgttggcc accatgcata caaaaatgct aaaagagaat tacgcaagat
     2641 tttagatagc tatctcgaaa atggtaaatt aaaatattac gatattatcg ttacaagcaa
     2701 tttagctact aaacatccgt ttttcgagta tgcacgttca tttgatttta tcattgtttc
     2761 agatatcggt ttaataaacg ttgatgtaaa aagctggggt gaaaaaacat tttatcactt
     2821 tgatgtacct gatgagcatg atacagaaat aagcaatagt aatattgaaa aagttgtcgg
     2881 tcattacatt agccagcaat atcatgatca gtttaattca tcaagaaagt ctatctatac
     2941 ttttacagaa acagttcaac caaatcgtgt tatttatgat ttttatgatt atgatccgta
     3001 tcaattagca gcaaataatg cgaaagcatt aaaggatcat attgaacaaa actttaactt
     3061 taaagtccaa agtaccggtg ttatttactt tagtgatggt acagttaata tcattcaagg
     3121 ttctgaagaa agagataaat atgttgatac agtttcaaca aaatcttcgt tacgacgtat
     3181 tattagcgaa gccatagagc tatctaaaca ccctttaaat aaagaacagg ttgatcaaat
     3241 cacagctata ttcaagtaaa atcaaaggca taataatcca ttacgctcga tacgcactat
     3301 ggttattatg cctttaaatt atttctatat ataaatttat ggtaataata aatcgatgct
     3361 tcaagtatat tttactttaa tatatataat cacctattta attatttact ccaaatattt
     3421 aatttctgtt gtttagcttt attttgtgct tctataaata catttctata tttgccattt
     3481 ggtgaaaaat acttctctct agcaagtccc ttttccacta attccttatt gtacatacga
     3541 tctttactta tccatacata cgccaatgtt ctaccatagc gatcttgttt ttctttatca
     3601 tattctaaat aaacatcttg atttgttaat gtcttcttac tataatttga tgcttctttg
     3661 ccaaatggtt gtacaggcgt attcggtttc accgtttctg gcgtatcaac ccctataagc
     3721 ctaactttaa tttctttacc attttgattt gcaataaatg tatcaccatc cacaactctt
     3781 tgaacatgta ctttatcttt accatttaaa tcttgtacag tttcatgatt cgtccccttt
     3841 ttgaaaggac ccgtatgatt cataaattga aatgctaata cacctacaat aatgatggct
     3901 accacaatca tagcaagcga tttatttgac ttcatattgc cacctacttc tcttttttca
     3961 ttccgattaa tcatataaaa gttaagaaat atcgtcaata gccatatcta catatttcaa
//
LOCUS       DAMQWL010000166         3863 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.172, whole genome shotgun sequence.
ACCESSION   DAMQWL010000166 DAMQWL010000000
VERSION     DAMQWL010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3863
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.172"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            951..3014
                     /locus_tag="PF788_002543"
     CDS             951..3014
                     /locus_tag="PF788_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002449344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDG6304782.1"
                     /translation="MNNNGEEHNHQNHMNHSNQMHHDNHASHDHHSGHAHHHGNFKVK
                     FFVSLIFAIPIILLSPLMGVNLPFQFTFPGSEWVVLILSTILFFYGGKPFLSGGKDEI
                     ATKKPGMMTLVALGISVAYIYSLYAFYMNNFSSATGHTMDFFWELATLILIMLLGHWI
                     EMNAVGNAGDALKKMAELLPNSAIKVMDNGQREEVKISDIMTDDIVEVKAGESIPTDG
                     IIVQGQTSIDESLVTGESKKVQKNQNDNVIGGSINGSGTIQVKVTAVGEDGYLSQVMG
                     LVNQAQNDKSSAELLSDKVAGYLFYFAVSVGVISFIVWMLIQNDVDFALERLVTVLVI
                     ACPHALGLAIPLVTARSTSIGAHNGLIIKNRESVEIAQHIDYVMMDKTGTLTEGNFSV
                     NHYESFKNDLSNDTILSLFASLESQSNHPLAISIVDFAKSKNVSFTNPQDVNNIPGVG
                     LEGLIDNKTYKITNVSYLDKHKLNYDDDLFTKLAQQGNSISYLIEDQQVIGMIAQGDQ
                     IKESSKQMVADLLSRNITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDY
                     QSDGNKVMMVGDGINDAPSLIRADIGIAIGAGTDVAVDSGDIILVKSNPSDIIHFLTL
                     SNNTMRKMVQNLWWGAGYNIVAVPLAAGILAFIGLILSPAIGAILMSLSTIIVAINAF
                     TLKLK"
     gene            3032..3577
                     /locus_tag="PF788_002544"
     CDS             3032..3577
                     /locus_tag="PF788_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000592150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1541 domain-containing protein"
                     /protein_id="HDG6304783.1"
                     /translation="MIKKLFFMILGSLLILSACSNNDEKDKDTNDQKSESHMKHNDES
                     KVPEDMKSTNEGEFKVGDKVTITAGHMPGMKGAEATVKGAYKTYAYVVSYKPTNGNEK
                     VNNHKWVVNEEIKDAPKDGFSKGDTVKLEASHMSGMKGATANIDNVKKTTVYVVDYKS
                     KDNGKIIKNHKWMTGNELKAR"
BASE COUNT         1413 a          509 c          684 g         1257 t
ORIGIN      
        1 atccatatgt tgtttcatta gaggatttaa aaatgattat aacactaaaa gatttcaaat
       61 tattatattt aatataaatt tacatatgat aaacgaataa caattccaat ataaattatt
      121 ttttgattat ttttatttat aactatatat tttatatgaa aaatataagt tataataata
      181 agtttaatat tgcctcgtgg ttctgagctt gaacttatct ctaaatcatt ttgagctact
      241 tatctatcaa ttcatatatt ctataacaat atttgtgaca tcacgtgcta tttcatgaag
      301 tgattttacg atatcacctt ctttagaaaa aatatatttc agtaggcacc gacgtataca
      361 gaatcatttg agtattaaaa ataaaaacta gaaaaagaaa ccgcatcatt aactgatacg
      421 cagaatcata ttataaataa aactaaaaat gaggttgtat ataactcact ctgaaattga
      481 ttgaatatat agtatcttta ataaaatgca gctattgtgg cgtagaattt gagaatcaaa
      541 aaatgattaa tatagtttga agagactgag cataaatact agaaaaatgg ccagtaaatg
      601 agtttactat aaactcattt actggcttct ctaataatta tcaagacaat ttgcgtttct
      661 aggcatactt tgaaatgcgc tattttcttt aagaatatta atatatgact tgtgttggta
      721 atgataacct tggttagagt gtattgtcat gtgatagtta agattagatc ttttaattaa
      781 aacattgttt taaatatcga tgacaaggtc taatgtagga cgtgtagata taaggttcgg
      841 aattatataa atccataaaa ggagataaat cgaaaacctt tataccctgg gtgggtatat
      901 gttatagtat aagtagcttt actataacat tttcattagg aggggttaat ttgaataata
      961 atggtgaaga gcataatcat caaaatcaca tgaatcattc caatcaaatg catcatgata
     1021 accatgcctc acatgatcat catagtggcc atgcacatca tcatggaaat tttaaagtta
     1081 agttttttgt ttcattaatt tttgcaatac ctatcattct tttatcgcca ctgatgggtg
     1141 ttaacttacc ttttcaattc acatttccag gttctgaatg ggtagtgtta atattaagta
     1201 caattttatt cttttatggt ggtaaaccgt tcttgtctgg tggtaaagat gaaattgcta
     1261 caaaaaaacc aggcatgatg accttagttg ccctaggtat ttcagtagct tatatttata
     1321 gcttgtatgc tttttatatg aataacttta gtagtgcaac tggtcataca atggactttt
     1381 tttgggaatt agcaacctta attttaatta tgctattagg acattggata gaaatgaatg
     1441 ctgtcggaaa tgctggagat gctttaaaga aaatggcaga actgttacct aatagtgcta
     1501 ttaaagttat ggataatggc caacgcgaag aagttaaaat atcagacatc atgactgatg
     1561 atatcgtcga agtaaaagcc ggagaaagca ttccaacaga tggtattatc gttcaaggac
     1621 aaacatctat agatgaatcc ctagtcactg gagaatctaa aaaagtacaa aaaaatcaaa
     1681 atgacaacgt catcgggggt tctattaatg ggtctggaac aatacaagtc aaggttacag
     1741 ctgtgggaga agatggatat ctttctcaag ttatgggact tgttaatcaa gcacaaaatg
     1801 ataaatctag tgctgaattg ttatctgata aagtagcggg ttatttattc tactttgctg
     1861 taagtgttgg cgtgatttct tttattgtct ggatgctcat tcaaaatgat gttgattttg
     1921 cattagaacg tcttgtaact gtgttagtca ttgcttgtcc acatgcttta ggcttggcaa
     1981 tacctttagt cactgcacgt tctacttcaa ttggtgcaca taatggttta attattaaaa
     2041 atagagagtc tgtagaaata gctcaacata tcgattatgt aatgatggac aaaactggta
     2101 ctttaactga gggtaacttt tctgtgaatc attatgagag ctttaaaaat gatttgagta
     2161 atgatacaat attaagcctt ttcgcctcat tagaaagtca atctaatcac ccattagcta
     2221 taagtattgt tgattttgcg aaaagtaaaa atgtttcatt tactaaccca caagacgtta
     2281 ataatattcc aggtgtcgga ttagaaggtc taattgataa taaaacatat aaaataacaa
     2341 atgtctctta tcttgataaa cataaactta attatgacga tgacttgttt actaaattag
     2401 ctcaacaagg taattcaatc agttatttaa ttgaggatca acaagtcatt ggcatgattg
     2461 ctcaaggaga tcaaattaaa gaaagctcaa aacaaatggt agctgattta ctatcaagaa
     2521 atattacacc agtcatgctt acaggtgaca ataatgaagt ggcacacgct gtcgcaaaag
     2581 aattaggtat tagtgatgtc cacgcacaac tcatgccaga agataaggaa agcattataa
     2641 aagattatca aagtgacggt aataaagtca tgatggtcgg agacggtatc aacgatgcgc
     2701 cgagtcttat aagagcggat attggtatag caattggtgc aggtacagat gttgcagtgg
     2761 attcaggtga tatcatactt gttaaaagta atccatcaga tatcattcat ttcttgaccc
     2821 tttcaaataa tactatgaga aaaatggtgc aaaacttatg gtggggtgca ggttataata
     2881 ttgttgctgt acctttagca gctggtattt tagcatttat tggcttgatt ttatcacctg
     2941 caataggtgc tattttaatg tctttaagta caattatcgt tgcaattaat gcctttacat
     3001 taaaattaaa ataaaagata ggagttttat tatgattaaa aaattatttt ttatgatatt
     3061 aggatcatta ctaatattat cagcttgctc caataatgat gaaaaagata aagacactaa
     3121 tgaccaaaaa agtgagagcc atatgaagca taatgatgaa agtaaagttc cagaagatat
     3181 gaaatcgact aatgagggtg aatttaaagt gggagataaa gtaacgatta cagcagggca
     3241 tatgccaggt atgaaaggtg cagaagctac tgtaaaaggt gcgtataaaa catatgccta
     3301 tgttgtaagt tataaaccca caaatggaaa tgaaaaagta aacaatcata aatgggtcgt
     3361 aaacgaagag attaaagatg cacctaaaga tggatttagt aagggcgata ctgttaaatt
     3421 agaagcaagt catatgtctg gtatgaaagg tgctacagcc aatatagata acgtgaaaaa
     3481 gactactgtt tacgtagttg attacaaatc caaagataat ggtaaaatca ttaaaaatca
     3541 taaatggatg acaggaaatg agctgaaagc acgataaaaa tctagttcta aattgagaaa
     3601 taaatagata taaaaatatc ctccttaatc aataatttaa ataacttatt attgttaagg
     3661 aggatatttt ttagtgtgta aattaaaaag aattttagaa gaataacatt tatcaaaaaa
     3721 ctgttcatta ccttattaat tgaaattata taattaaaaa ccgcatcatt aaccgatacg
     3781 cagaggcgta tcataagtaa aactaaaaaa ttctgtatga ggagataata atttggaggg
     3841 tgttaaatgg tggacattaa atc
//
LOCUS       DAMQWL010000167         3831 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.173, whole genome shotgun sequence.
ACCESSION   DAMQWL010000167 DAMQWL010000000
VERSION     DAMQWL010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3831
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.173"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..267
                     /locus_tag="PF788_002545"
     CDS             <1..267
                     /locus_tag="PF788_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5079 family protein"
                     /protein_id="HDG6304784.1"
                     /translation="FTLLKLPKVTKRWGGKTKTHFGLLLTALSSFIYIEKIIEYILVP
                     NVVESKFIIIVSMLVIAGAQFVAFQFIMQYSRFYIFELNTEDDD"
     gene            414..1025
                     /locus_tag="PF788_002546"
     CDS             414..1025
                     /locus_tag="PF788_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5080 family protein"
                     /protein_id="HDG6304785.1"
                     /translation="MEFLLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAIVFVIIGI
                     TYIFIGDSYDQLTNFNVILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSE
                     YNSVESLRINIEIAKYKGIISLIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFI
                     IIIFAVWDLFIRVRKGAFAFVVIRPILFSCWLFILNMILSRLL"
     gene            1161..1379
                     /locus_tag="PF788_002547"
     CDS             1161..1379
                     /locus_tag="PF788_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304786.1"
                     /translation="MENQKQGNGLKIATWVFIVLTVVTPLFGIGSIVCSINYKKYDAE
                     KGSKLLQIAIIVTIIAFVLNLLAYLGLR"
     gene            1511..2011
                     /locus_tag="PF788_002548"
     CDS             1511..2011
                     /locus_tag="PF788_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01741 family protein"
                     /protein_id="HDG6304787.1"
                     /translation="MTFEEKLSEMYSEIANKISSMIPVEWEKVYAMAYIDDGGGEVFY
                     YYTEPGSNELYYYTSVLNKYDISESEFMDSVYELYKQFQNLRNLFKEEGHEPWTSCEF
                     DFTREGELKVSFDYIDWINSEFGQVGRQNYYKYRKFGILPETEYEINKVKEIEQYVKE
                     QEEAEQ"
     gene            2022..2522
                     /locus_tag="PF788_002549"
     CDS             2022..2522
                     /locus_tag="PF788_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01741 family protein"
                     /protein_id="HDG6304788.1"
                     /translation="MNFEEKLSEMYNKIANEINEMIPVEWEKVYVIAYVDDGGGQVIF
                     YYTKPRNDELYYYSSIVEDYNVLEEIFDDLWMELYRSFKKLRNIFKEESLEPWTSCEF
                     DFTKEDKLKVSFDYIDWKNTEFDQLGQENYYNYRKFGIIPEMEYEMEEVKQIEQYIKE
                     QEEAEQ"
     gene            2533..3028
                     /locus_tag="PF788_002550"
                     /pseudo
     CDS             2533..3028
                     /locus_tag="PF788_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498867.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01741 family protein"
     gene            3039..3530
                     /locus_tag="PF788_002551"
     CDS             3039..3530
                     /locus_tag="PF788_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01741 family protein"
                     /protein_id="HDG6304789.1"
                     /translation="MTFEEKLSEMYSEIANKIISMIPVEWEKVYAMAYIDEECGEVFY
                     NYTEPSSDELFYYTSVIKKYNLLKSSFMDSVYELHDQFEELREVFIEEGLEPWTSCEF
                     DFTKEDKLKVSFDYIDWINTEFDQLGRENYYMYKKFGVLPETEYEMEEVKEIEQYIKE
                     QEE"
     gene            3740..>3831
                     /locus_tag="PF788_002552"
     CDS             3740..>3831
                     /locus_tag="PF788_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5079 family protein"
                     /protein_id="HDG6304790.1"
                     /translation="MTTKENIDILRKPGAQALSLASLFMILFSCL"
BASE COUNT         1491 a          369 c          713 g         1258 t
ORIGIN      
        1 ttcacgttat taaaattacc taaagtaaca aaacgttggg gtggtaaaac taaaacacat
       61 ttcggtttat tattaactgc gttgagctca tttatatata ttgaaaaaat tatcgaatat
      121 atattggttc ctaatgtcgt agaatctaag tttataatta ttgtgagcat gttggttatc
      181 gctggagcac aatttgtggc atttcaattt attatgcaat acagtagatt ctatattttt
      241 gaattaaaca ctgaagatga tgactaaaca attttataaa ttctgtgaag tatacttata
      301 tataagataa tcaacttcaa cgtatatcac catattattt tatactcaat gatgtgaatg
      361 gatttaagtg gattgatatt aaagtaaaag ttatggaata ttgaggtgtg aatatggagt
      421 tcttattatt aattgtcgta gccggactgt attatattat atatttaact gctgtgatgt
      481 attctgaaaa aatagtagta ttgcctataa tcatctatgc cattgtgttt gtaataattg
      541 gtatcactta tatctttata ggcgacagct atgatcaatt aacaaatttc aatgtgattt
      601 tgtatatggg gagtttgttt tatgcatgga tggctattag aaatctttgg aacagaccac
      661 tattactaaa atataagaac attacagata gttcaagtgg aatagttaat aaatctgaat
      721 acaattcagt tgaaagctta cgtataaata ttgaaatagc taagtataaa gggattattt
      781 ctttgatagt agctatagta ctaacggtat taatgacatt aaagtcaaca cctcaaatca
      841 ctgcagaaac acgtgactta agtatctcat ttttcatact cagcttattt atcattatta
      901 tatttgcagt ttgggatttg tttattagag ttagaaaagg agcgtttgct tttgttgtaa
      961 taaggccaat attatttagt tgttggttat ttattttgaa tatgatttta tcaagattat
     1021 tataattgta ttacatatag gtgtgggtaa atttttattt atgaaatgat aaaaaagtat
     1081 atactattaa tatctttttt actataatta taaatagtta aataaattga aagacaaaat
     1141 aatgagtagg agttaatgag atggaaaacc aaaaacaagg caatggctta aaaattgcaa
     1201 catgggtatt tattgtatta acagtagtta caccgctatt tggtattgga agtattgttt
     1261 gtagtattaa ttataaaaaa tacgatgctg aaaaaggttc gaagttattg caaattgcaa
     1321 ttatcgtaac aataattgct tttgttttaa atttattagc atatttaggt ttaagataag
     1381 taaaacgaat ttgaagaagc attaagcgac atttgggtgt tgtttaatgc tttttattta
     1441 acggaaataa gtgtagagaa taaattaata gtttaatcaa gagatatttc gaacacatag
     1501 gggcgataac atgactttcg aagaaaaatt aagtgaaatg tatagcgaga ttgcgaataa
     1561 gattagcagc atgataccgg tagagtggga aaaggtatat gcaatggcat atatagatga
     1621 cggaggagga gaagtgttct actattacac agaacctgga agtaatgaat tatactacta
     1681 tactagtgta ttaaataaat atgatatatc ggaatcggaa tttatggatt cagtgtatga
     1741 gttgtataaa caatttcaaa atttaaggaa tttatttaaa gaagaaggac atgaaccatg
     1801 gacatcatgc gaatttgact ttacaagaga aggtgaatta aaagtttcat ttgattatat
     1861 tgattggata aattcagaat ttggtcaagt aggtcgacaa aattactata agtatagaaa
     1921 atttggaatt ttaccagaaa cggaatatga aattaataaa gttaaagaaa tcgagcaata
     1981 tgttaaagag caagaagaag ctgaacaata gaggcgataa catgaatttc gaagaaaaat
     2041 taagtgaaat gtacaataaa attgcaaatg agatcaatga aatgatacca gtagagtggg
     2101 aaaaggtata tgtaattgca tatgtggacg atggaggtgg gcaagttata ttttattata
     2161 ccaagcccag aaatgatgag ctgtattatt attcgagtat cgttgaagat tataatgttt
     2221 tagaagaaat ctttgatgat ttatggatgg aactttatag atcatttaaa aaattaagaa
     2281 atatatttaa agaagaaagt cttgaaccat ggacatcatg tgaatttgac tttacaaaag
     2341 aagataaatt aaaagtttca tttgattata ttgattggaa gaatacagaa tttgatcaat
     2401 taggccaaga aaactactat aactatagaa aattcggaat tataccagaa atggaatatg
     2461 aaatggaaga ggttaaacaa atcgagcaat atattaaaga gcaagaagaa gctgaacaat
     2521 agaggcgata acatgatttt cgaagaaaaa ctaaatgaaa tgtacaacga gattgcgaat
     2581 aaaattagta gcatgatacc agtagaatgg gaaaaggtat atacaatggc ttatatagat
     2641 gatggaggag gtgaagtatt ctttaattat actaaacagc gatgaattga attattacac
     2701 cgatatacct aaggagtata acatttctgt gcaagtattt gatgatttat ggatggattt
     2761 atatgatttg tttgaggaat taagaaattt atttaaagaa gaaggactag aaccatggac
     2821 atcatgcgaa tttgatttta caagagaagg taaattaaaa gtttcatttg attatattga
     2881 ttggataaat tcagaatttg gtcaagtagg tcgacaaaat tactataagt atagaaaatt
     2941 tggaatttta ccagaaacgg aatatgaaat taataaagtt aaagaaatcg agcaatatat
     3001 taaagagcaa gatgaagctg aactataggg gcgataatat gactttcgaa gaaaaattaa
     3061 gtgaaatgta tagcgagatt gcgaataaga ttattagcat gataccggta gagtgggaaa
     3121 aagtatatgc aatggcatat atcgatgaag aatgtggaga agtgttttac aattatactg
     3181 aaccaagcag tgatgaatta ttttactata caagtgtgat aaagaagtat aatttattga
     3241 aatcaagctt tatggattca gtatatgagt tgcatgatca atttgaggaa ctaagagaag
     3301 tatttataga agaaggtctt gaaccatgga catcatgcga atttgatttt acaaaagaag
     3361 ataaattaaa agtttcattt gattatattg attggataaa tacagagttt gatcaattag
     3421 gccgtgaaaa ttattatatg tacaaaaaat ttggtgtttt accagaaacg gaatatgaaa
     3481 tggaggaggt taaagaaatc gagcaatata ttaaagagca agaagaatag acaatcttaa
     3541 tgtaagatta aacaataaag ctttgtttag tctttttagc gtttaagtaa aaaacaatag
     3601 agaccataaa gttgtcatca aataataata taaagataat tttaggcttt tatactttta
     3661 atcgaaaaga atctaagtac ttataacttt aaatacttaa tatgctatta caaaatcaat
     3721 gtataggaga taggtaaata tgactactaa ggaaaatata gacattcttc gaaagccagg
     3781 tgcacaagcc ttaagtttag catcattatt tatgatactt ttttcatgtc t
//
LOCUS       DAMQWL010000168         3825 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.174, whole genome shotgun sequence.
ACCESSION   DAMQWL010000168 DAMQWL010000000
VERSION     DAMQWL010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.174"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..626
                     /locus_tag="PF788_002553"
     CDS             <1..626
                     /locus_tag="PF788_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDG6304791.1"
                     /translation="QQQKKGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNER
                     SDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGKSN
                     YNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
                     NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL"
     gene            1009..1686
                     /locus_tag="PF788_002554"
     CDS             1009..1686
                     /locus_tag="PF788_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL11"
                     /protein_id="HDG6304792.1"
                     /translation="MKLKNIAKASLALGILTTGMITTTAQPVKASTLEVRSQATQDLS
                     EYYNRPFFEYTNQSGYKEEGKVTFTPNYQLIDVTLTGNEKQNFGEDISNVDIFVVREN
                     SDRSGNTASIGGITKTNGSNYIDKVKDVNLIITKNIDSVTSTSTSSTYTINKEEISLK
                     ELDFKLRKHLIDKHNLYKTEPKDSKIRITMKDGGFYTFELNKKLQTHRMGDVIDGRNI
                     EKIEVNL"
     gene            1708..3216
                     /locus_tag="PF788_002555"
     CDS             1708..3216
                     /locus_tag="PF788_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKLRK protein"
                     /protein_id="HDG6304793.1"
                     /translation="MRENFKLRKMKVGLVSVAITMLYIMTNGQAEASENQNALISNIN
                     VDNQEKQNNVNQAVQPQNNTNETSKVPANFVKLNDIKPGDTSIQGTTLPNQFILLTID
                     KKDVSSVEDSDSSFVMSDKDGNFKYDLNGRKIVHNQEIEVSSSDPYLGDDEEDEEVEE
                     TSTEEVGAEEESTEAKATYTTPRYEKAYEIPKEQLKEKDGHHQVFIEPITEGSGIIKG
                     HTSVKGKVALSINNKFINFETNANGGPNKEEAKSGSEGIWMPIDDKGYFNFDFKTKRF
                     DDLELKKNDEISLTFAPDDEDEALKSLIFKTKVTSLEDIDKAETKYDHTKVEKVKVLK
                     DVKEDLHVDEIYGSLYHTEKGKGILDKEGTKVIKGKTKFANAVVKVDSELGEGQEFPD
                     LQVDEKGEFSFDVDHAGFRLQNGETLNFTVVDPITGELLSGNFVSKNIDIYESPEEKA
                     DREFDERMENTPAYHKLHGDKIVGYDTNGFPITWFYPLGEKKVERKAPKLEK"
     gene            complement(3319..3627)
                     /gene="spn"
                     /locus_tag="PF788_002556"
     CDS             complement(3319..3627)
                     /gene="spn"
                     /locus_tag="PF788_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myeloperoxidase inhibitor SPIN"
                     /protein_id="HDG6304794.1"
                     /translation="MKFKKVLVATAMVGVLATGVVGYGNQADAKVYSQNGLVLHDDAN
                     FLEHELSYIDVLLDKNADQATKDNLRSYFADKGLHSIKDIINKAKQDGFDVSKYEHVK
                     "
BASE COUNT         1544 a          463 c          662 g         1156 t
ORIGIN      
        1 ttcaacaaca gaaaaaaggc tatatgcaga aaattttctc acaggaactg cgattcaaag
       61 atgagaatgg tgaagattat ccagattggg aaaatagcaa aatagaaaaa tatttaaaag
      121 agagaaacga acgttctgac aaagggcaaa tgctttcagt aactataaat agtggcatta
      181 taaaatttag tgaattggat agaaaagata attcaagtaa agataaaagt aattataaag
      241 tagttaggaa aaatgatatt gcatataatt ctatgagaat gtggcaaggg gctagtggta
      301 aatcaaatta taatgggatt gttagccctg catatactgt gctttatcca acacaaaata
      361 ctagctcatt atttattgga tataagttta aaacacatag aatgattcat aaatttaaaa
      421 ttaattcaca aggattaaca tcagatacat ggaacttaaa atataaacaa ttaaaaaata
      481 taaatataga tatacctgta ttggaggaac aagaaaagat aggtgatttc tttaaaaaaa
      541 tggatatatt gataagtaaa cagaaaatga aaattgaaat attagaaaaa gagaaacaat
      601 cctttttaca aaaaatgttc ttataacttt gataaataca tagattgcat aagaataaaa
      661 tttgtataat ttaacataaa agttgtaaaa gtaaagtgaa ttaaaaacga acattaaatt
      721 taggcactgt gaaagcgcag tgtctttttt gtgtcgaaat tgtgtacaga ataagtagtt
      781 aaataaagat taagttgaga taaagtgtta ttcgtaaata aaagagagta gatcgatagg
      841 aattgaatga tattagttaa ctatttatta aattacttaa taatgattaa tttttagtta
      901 aagtaagttt aatgtgaagc acgaccattg ctcattataa tgaatgagga ttgttcgtat
      961 tgcgtaatag aataaatcaa atagactaaa aattgggagc atagaattat gaaattaaaa
     1021 aatattgcta aagcaagttt agcactaggg attttaacaa cagggatgat tacaactact
     1081 gctcagccag taaaagcaag tacattagag gttagatcac aagctactca agacttgagt
     1141 gaatattata atagaccgtt ctttgagtat acaaatcagt caggatataa agaggaagga
     1201 aaagtgacgt ttactcctaa ttatcaactt atagatgtaa ctttaactgg gaatgaaaag
     1261 caaaattttg gtgaagatat ttctaatgta gatatatttg ttgtaagaga aaattctgat
     1321 agatctggta atacagcttc aattggtggt attactaaaa caaacggttc aaattatatt
     1381 gataaagtaa aagatgtaaa tttaataatt actaaaaaca tcgatagtgt tacatcaacg
     1441 tcaacatcat ctacatatac aattaataaa gaagaaattt cattaaaaga acttgatttt
     1501 aaattaagaa agcatttaat tgataaacat aacctttata agacagaacc taaagacagt
     1561 aaaattcgaa ttactatgaa agatggtggg ttctacacat ttgaattgaa taaaaagtta
     1621 caaacacacc gtatgggtga tgttattgat ggcagaaata tagaaaaaat tgaagtgaat
     1681 ttataaaatt attcgaggga gcatatcatg agggaaaatt ttaagttacg taaaatgaaa
     1741 gtcggtttag tatctgttgc aattacaatg ttatatatta tgacaaacgg acaagcagaa
     1801 gcatctgaaa atcaaaacgc tttaatctct aatataaatg tagacaatca ggaaaaacag
     1861 aataatgtaa atcaagctgt tcagcctcaa aataatacta atgaaacatc aaaagtaccg
     1921 gctaattttg tcaaattgaa tgatattaaa ccaggtgata cttctataca aggaacaact
     1981 ttaccaaatc aatttatact attaactatt gataaaaaag atgtgagctc agttgaagat
     2041 tctgacagca gctttgttat gtctgataaa gatgggaatt ttaagtatga cttaaatggt
     2101 cgcaaaattg ttcataatca agaaattgaa gtgtcttcat cagatcccta tttaggtgac
     2161 gatgaagaag atgaagaagt agaagaaact tcaactgaag aagttggtgc tgaggaagaa
     2221 agtacagaag ctaaagctac atatacaaca ccgcgatatg aaaaagcgta tgaaataccg
     2281 aaagaacagc taaaagaaaa agatggacat caccaagttt ttatcgaacc tattactgaa
     2341 ggttcaggta ttattaaagg ccatacctct gtaaaaggta aagttgctct atctattaat
     2401 aataaattta ttaactttga gacaaatgct aatggtggtc caaataaaga agaagcgaaa
     2461 tctggatcag aaggaatctg gatgcctatt gatgacaaag gatactttaa ttttgacttc
     2521 aaaacgaaac gtttcgatga tttagagtta aagaaaaatg atgagatctc attaacattt
     2581 gcacctgatg acgaagatga ggcattgaag tcattaattt tcaaaactaa ggtaacgagt
     2641 ttagaagata ttgataaagc agaaactaaa tatgaccata ctaaagtgga aaaagtaaaa
     2701 gtattgaaag atgttaaaga agatttacat gtagatgaaa tttacggaag cttatatcat
     2761 acagaaaaag gtaaaggtat tcttgataaa gaaggtacta aagtaattaa aggtaagact
     2821 aaattcgcaa atgcagttgt gaaggtagac tctgaactag gtgaaggtca agaattccct
     2881 gatttgcaag tcgatgaaaa aggtgaattc agctttgatg tagatcatgc tggatttaga
     2941 ttacaaaatg gagaaacact aaacttcaca gtagttgatc ctattacagg tgaattatta
     3001 agtggaaatt ttgtttctaa aaacatagat atttatgaat ctcctgaaga aaaagcagat
     3061 cgtgagtttg atgaaagaat ggaaaacaca cctgcatatc ataaattaca tggtgataaa
     3121 attgtcggct acgatactaa cggattcccg attacctggt tttatccatt aggtgaaaag
     3181 aaagttgaac gtaaggcacc aaaattagaa aaataattaa ataaaacagc ttaatgatgt
     3241 aatgaaatta gtgagttaat cactgacttc tacgtcattg agctgttttt tgtgctttgt
     3301 tacaaagcat tattgaattt attttacgtg ttcatatttt gaaacatcaa agccgtcttg
     3361 tttagctttg ttgataatgt ctttgattga atgtagtcct ttatcggcga agtatgatct
     3421 taagttgtct tttgtagctt ggtcagcatt cttatctaat aacacatcaa tataacttaa
     3481 ttcatgttct aagaagtttg catcatcatg tagtacgagt ccattttgag aataaacttt
     3541 cgcatctgct tgattaccat atccaacaac gccagttgct aaaacaccta ccattgccgt
     3601 agctactaaa acctttttaa atttcatatc tatcactcct ctaaaaattg taactccatc
     3661 ataacactga atattaagaa aattacgttt attaagtcga tttaataatt tttaataaat
     3721 agttaaagtg acaaatattg tttaaatgca attaatcttt aatacgatgc ttgaggattt
     3781 ttcctaataa aaccttgatt tcaaaaaggg tttaaatcaa atgaa
//
LOCUS       DAMQWL010000169         3819 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.175, whole genome shotgun sequence.
ACCESSION   DAMQWL010000169 DAMQWL010000000
VERSION     DAMQWL010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3819
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.175"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            107..2182
                     /gene="topA"
                     /locus_tag="PF788_002557"
     CDS             107..2182
                     /gene="topA"
                     /locus_tag="PF788_002557"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDG6304795.1"
                     /translation="MTLADNLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQM
                     GVDTEDNYEPKYITIRGKGPVVKELKKHAKKAKNVFLASDPDREGEAIAWHLSKILEL
                     EDSKENRVVFNEITKDAVKESFKNPREIEMNLVDAQQARRILDRLVGYNISPVLWKKV
                     KKGLSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPF
                     KLKTKKDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKT
                     MMVAQQLYEGIDLKKQGTIGLITYMRTDSTRISDTAKVEAKQYITDKYGESYTSKRKA
                     SGKQGDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVS
                     LDITQGDIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPA
                     QHYTQPPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLESKRFVPTELGEI
                     VHEQVKEYFPEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEME
                     KIEIKDEPAGEDCEICGSPMVIKMGRYGKFMACSNFPDCRNTKAIVKSIGVKCPKCND
                     GDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQYLVENKKGKTTQVICSN
                     CDYKEAAQK"
     gene            2338..3645
                     /gene="trmFO"
                     /locus_tag="PF788_002558"
     CDS             2338..3645
                     /gene="trmFO"
                     /locus_tag="PF788_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HDG6304796.1"
                     /translation="MTQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHT
                     DKFAELVCSNSLRGNALTNGVGVLKEEMRRLNSIIIEAADKARVPAGGALAVDRHDFS
                     GYITETLKNHENITVINEEINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDA
                     AAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEK
                     EKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNI
                     VGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQ
                     FAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPRETMIGSMAYYISHAKNNKN
                     FQPMNANFGLLPSLETRIKDKKERYEAQANRALDYLENFKKTL"
BASE COUNT         1467 a          562 c          740 g         1050 t
ORIGIN      
        1 tataaaaaat agacagggaa aatgatttgt ttagatataa aacgttgaca aaagcaaaat
       61 taagcgttta tcatttatct ttagtaatta gattagcgag ggggaaatga cattggcaga
      121 taatttagtc attgttgaat cgcctgcaaa agcaaaaacc attgaaaagt atttaggtaa
      181 gaaatataaa gttatagctt caatgggaca cgtcagagac ttaccaagaa gtcaaatggg
      241 tgtcgacact gaagataatt acgaaccaaa atatataaca atacgcggaa aaggtcctgt
      301 tgtaaaagaa ttgaaaaaac atgcaaaaaa agcgaaaaac gtctttctcg caagtgaccc
      361 cgaccgtgaa ggtgaagcaa ttgcttggca tttatcaaaa attttagagc ttgaagattc
      421 taaagaaaat cgcgttgttt tcaacgaaat aactaaagac gctgttaaag aaagttttaa
      481 aaatcctaga gaaattgaaa tgaacttagt cgatgcacaa caagcgcgtc gaatattaga
      541 tagattagtt ggctataaca tctcgccagt tctttggaaa aaagtaaaaa aagggttgtc
      601 agcgggtcga gttcaatctg ttgcacttcg tttagtcatt gaccgtgaaa atgaaattcg
      661 aaactttaaa ccagaagaat attggactat tgaaggagaa tttagataca aaaaatcaaa
      721 attcaatgct aaattccttc attataaaaa taaacctttt aaactaaaaa cgaaaaaaga
      781 tgttgagaaa attacagctg cattagatgg agatcaattc gaaattacaa acgtgactaa
      841 aaaagaaaaa acgcgtaatc cagcaaaccc atttacaact tctacattac aacaagaggc
      901 ggcacgtaaa ttaaacttta aagcaagaaa aacaatgatg gtcgcacaac aattatatga
      961 aggtatagat ttgaaaaaac aaggtacgat tggtttaata acatatatga gaaccgattc
     1021 tacacgtatt tcagatactg ccaaagttga agcaaaacag tatataactg ataaatacgg
     1081 tgaatcttac acttctaaac gtaaagcatc agggaaacaa ggtgaccaag atgcccatga
     1141 ggctattaga ccttcaagta ctatgcgtac gccagatgat atgaagtcat ttttgacgaa
     1201 agaccaatac cgattataca aattaatttg ggaacgattt gttgctagtc aaatggctcc
     1261 agcaatactt gatacagtct cattagacat aacacaaggt gacattaaat ttagagcgaa
     1321 tggtcaaaca atcaagttta aaggatttat gacactttat gtagaaacta aagatgatag
     1381 tgatagcgaa aaggaaaata aactgcctaa attagagcaa ggtgataaag tcacagcaac
     1441 tcaaattgaa ccagctcaac actatacaca accacctcca agatatactg aggcgagatt
     1501 agtaaaaaca ctagaagaat tgaaaattgg gcgaccatca acttatgcac cgacaataga
     1561 tacgattcaa aagcgtaact atgtcaaatt agaaagtaag cgttttgttc ctactgagtt
     1621 gggagaaata gttcatgaac aagtgaaaga atacttccca gagattattg atgtggaatt
     1681 cacagtgaat atggaaacgt tacttgataa gattgcagaa ggcgacatta catggaggaa
     1741 agtaatcgac ggtttcttta gtagctttaa acaagatgtt gaacgtgctg aagaagagat
     1801 ggaaaagatt gaaatcaaag atgagccagc cggtgaagac tgtgaaattt gtggttctcc
     1861 tatggttata aaaatgggac gctatggtaa gttcatggct tgctcaaact tcccggattg
     1921 tcgtaataca aaagcgatag ttaagtctat tggtgttaaa tgtccaaaat gtaatgatgg
     1981 tgacgtcgta gaaagaaaat ctaaaaagaa tcgtgtcttt tatggatgtt cgaaatatcc
     2041 tgaatgcgac tttatctctt gggataagcc gattggaaga gattgtccaa aatgtaacca
     2101 atatcttgtt gaaaataaaa aaggcaagac aacacaagta atatgttcaa attgcgatta
     2161 taaagaggca gcgcagaaat aatattttta tttcctagat acattttaag attgttaaat
     2221 agaatcatta gtgaatctta ttttaaagat agtaaaggat taatctaaat aagtgcggat
     2281 aatataaaca taacaacata attaaaagac ataaatgaca ataaaaggag tatagaaatg
     2341 actcaaactg taaatgtaat aggtgctggt cttgccggtt cagaagcggc atatcaatta
     2401 gctgaaagag gaattaaagt taatctaata gagatgagac ctgttaaaca aacaccagcg
     2461 caccatactg ataaatttgc ggaacttgta tgttccaatt cattacgcgg aaatgcttta
     2521 actaatggtg tgggtgtttt aaaagaagaa atgagaagat tgaattctat aattattgaa
     2581 gcggctgata aggcacgagt tccagctggt ggtgcattag cagttgatag acacgatttt
     2641 tcaggttata ttactgaaac acttaaaaat catgaaaata tcacagttat taatgaagaa
     2701 attaatgcca ttccagatgg atacacaatt atcgcaacag gaccacttac tacagaaacc
     2761 cttgcgcaag aaatagtgga cattactggt aaagatcaac tttatttcta tgatgcggct
     2821 gctccaatta ttgaaaaaga atctattgat atggataaag tttacttaaa gtcccgttat
     2881 gataaaggtg aagctgcata tttaaactgt cctatgactg aggatgaatt taatcgcttt
     2941 tatgatgcag tattagaagc tgaagttgcg cctgtaaatt catttgaaaa agaaaaatat
     3001 ttcgagggtt gtatgccttt tgaagtaatg gcagaacgcg gacgcaagac attactattt
     3061 ggaccaatga aaccagtagg attagaagat ccaaagactg ggaaacgtcc ttatgcggtg
     3121 gttcaattaa gacaagatga cgctgctggt acactctaca atattgttgg cttccaaacg
     3181 catttaaaat ggggagctca aaaagaagtc attaaattaa ttccaggctt agaaaatgtt
     3241 gatattgtta gatatggtgt gatgcataga aataccttca ttaattcacc ggacgtatta
     3301 aacgagaaat atgaattgat ttcacaacca aacatacagt ttgcgggaca aatgactggt
     3361 gttgaaggtt atgtagaaag cgcagctagc ggcttagttg caggtatcaa tcttgcgcat
     3421 aaaatattag gcaagggtga ggtagtattt ccgagagaaa caatgattgg aagtatggct
     3481 tactatattt ctcatgctaa aaacaataag aatttccaac ctatgaatgc taacttcggg
     3541 ttattaccat ctttagaaac tagaattaaa gataaaaaag aacgctatga agcacaagct
     3601 aatagagctt tggattactt agaaaatttc aaaaaaactt tataaaatag ttagaaagac
     3661 tagatatgct attcattctt aagtcatcaa cgagtaagta atgactttct aaatggaaaa
     3721 tacttatcct agtcttttta attttggaat tgttacgtat ttctgacaat ttagaattcg
     3781 cattcaaaaa atatctaaat aaataacacg caataagtt
//
LOCUS       DAMQWL010000170         3805 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.176, whole genome shotgun sequence.
ACCESSION   DAMQWL010000170 DAMQWL010000000
VERSION     DAMQWL010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3805
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.176"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(191..523)
                     /locus_tag="PF788_002559"
     CDS             complement(191..523)
                     /locus_tag="PF788_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4889 domain-containing protein"
                     /protein_id="HDG6304797.1"
                     /translation="MGKKMGLGLSIALVVIGIAVVCLMIFSSQKTTYFGYMNSNTNAE
                     KVVSEKDGLVKHNIKVEPSNDFKPKKGDFVKLVSKDDGKTFYKQEIVKHDDVPHGLMM
                     KIHDMHMN"
     gene            complement(607..1752)
                     /locus_tag="PF788_002560"
     CDS             complement(607..1752)
                     /locus_tag="PF788_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HDG6304798.1"
                     /translation="MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIV
                     KANLWLRTADRIKIVVGRFNATTFDELFEQTKALPWESIIDKEGNFPVQGRSVKSTLH
                     SVPDCQAITKKAIVERLRRAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNR
                     RGYRLAQGEAPIKETLAASLIRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFN
                     REFVSEQWNIMPANIYDDYRDEADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLS
                     DIIKFSVKDVNTLTIDTEEPVALIGNPPYGERIGDREEVEEMYRYIGKLMKQHPFLST
                     YILTSNKEFEYLVDRKATKRRKLFNGYIECTYYQYWGKKTERKTIEN"
     gene            complement(1961..2340)
                     /gene="rnpB"
                     /locus_tag="PF788_002561"
     ncRNA           complement(1961..2340)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PF788_002561"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            complement(2403..2747)
                     /gene="gpsB"
                     /locus_tag="PF788_002562"
     CDS             complement(2403..2747)
                     /gene="gpsB"
                     /locus_tag="PF788_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HDG6304799.1"
                     /translation="MSDVSLKLSAKDIYEKDFEKTMARGYRREEVDAFLDDIIADYQK
                     MADMNNEVVKLSEENHKLKKELEELRLRVATSRPQDNKSFSSNNTTTNTSSNNVDILK
                     RISNLEKAVFGK"
     gene            complement(2761..3324)
                     /locus_tag="PF788_002563"
     CDS             complement(2761..3324)
                     /locus_tag="PF788_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HDG6304800.1"
                     /translation="MVKTVYVTGYKSFELNIFKDDAPEVHYLKQFIKHKIEQLLDEGL
                     EWVLIQGQMGIELWTAEVVIELQRTYDSLKFAVITPFQGHTEKWNEHNQSKYANIIKH
                     ADYVDSIFHTSYQGPFQFKQADQFMLEHSDQTLLIYDEEQEASPKFFKQMLVDFMDKT
                     NYTCDIVTFDELTAFINDLQWSEDQSF"
     gene            complement(3317..3667)
                     /locus_tag="PF788_002564"
     CDS             complement(3317..3667)
                     /locus_tag="PF788_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YppE family protein"
                     /protein_id="HDG6304801.1"
                     /translation="MNDVVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDS
                     ILNEIKLHREFIIEVPYMNSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDL
                     QNILDGVTKEGTDG"
BASE COUNT         1157 a          724 c          498 g         1426 t
ORIGIN      
        1 gaactgacga aatttacaaa atgattctcg tctctctaat tacttaaaac gggttctata
       61 ataaatcgta ctgatggaaa gtttttactt tttatctgtc cgattttttg aatttgaaga
      121 taaaaaaaca tctaaaacgc ataagaagat aactctactt cttcaaaatt acgttataga
      181 tgctttttta ttaattcata tgcatgtcgt gaattttcat cattaaaccg tgtgggacgt
      241 catcatgttt aacaatctct tgtttataaa atgtcttccc atcatcttta gaaactaatt
      301 ttacaaagtc tccttttttc ggcttgaaat cattagatgg ttctactttg atattatgtt
      361 tgactaatcc atctttttca ctgacaactt tttctgcatt tgtattacta ttcatataac
      421 caaaataagt cgttttttga ctagaaaaaa tcattaaaca tacaacggca ataccaataa
      481 caaccaatgc aatagataaa cctagaccca tttttttacc catttataga ctccttcatt
      541 tttcaaaaat acctattatc atgagaactt aattattact aattttagtc acgcattaga
      601 aacactttag ttttcaatag ttttacgttc tgtcttttta ccccagtatt gataataagt
      661 acattctata tatccattaa ataacttacg tcgctttgtt gctttacgat ctactaaata
      721 ttcaaattct ttattacttg ttaaaatgta tgtagataaa aatggatgtt gtttcattag
      781 tttaccaata taacggtaca tttcttcaac ttcttcacga tcaccaatac gttcaccata
      841 tggaggattt ccaattaacg ccaccggttc ttctgtatca attgttaatg tattgacatc
      901 ttttacacta aatttaataa tatcagacaa tccaacttct tcagcgttac gcttagcaat
      961 ctctaccatt tctggatcga tatcagaagc atatacttcg atttctttat cataatcagc
     1021 catcttatcc gcttcatcac ggtaatcatc ataaatattt gctggcatga tgttccattg
     1081 ctctgatacg aactcgcgat taaaaccagg tgcgatattt tgagcaatta aacaagcttc
     1141 tatagctatt gttcccgaac cgcaaaatgg atcaattaaa ggtgtatcac ctttccagtt
     1201 tgcaagacgg attaaacttg ctgccaacgt ttctttaatt ggtgcttcac cttgtgctaa
     1261 tctataacca cgtctgttca aaccagaacc tgatgtgtcg atagtcaata atacattatc
     1321 ttttaaaatg gcaacttcaa cagggtattt ggcacctgat tcatttaacc aacctttttc
     1381 gttatatgcg cgacgtaatc gttcaacaat agctttctta gttatcgcct gacaatctgg
     1441 cacactatgt agtgttgatt taacgcttct accttgaact gggaagttac cctctttatc
     1501 aattatagat tcccaaggga gcgctttggt ttgttcgaat aattcgtcaa acgttgttgc
     1561 gttaaaacgt ccaacaacaa ttttgattcg gtctgctgtg cgcaaccata aatttgcctt
     1621 tacaattgca cttgcgtctc cttcaaaaaa tatacgacca ttttcaacat ttgtttcata
     1681 gcctaattct tgaatttccc tagcaacaac agcttctaat cccatcggac aaactgcaag
     1741 taattgaaac atatatgatt ctccttttat acaggtattt tattcttagc ttgtgttttt
     1801 tatacatttc caacaaattt aatcgctgat acattaacgc atccgcttac tattttaaaa
     1861 caaggcagtg tcattatatc aagacaaggc gttaatttta agtgttcttt tcatgaaaaa
     1921 agctctccat catctaggag agctaaacta gtagtgatat ttctataagc catgttctgt
     1981 tccatcgtac tcatcacgtg cactagtcac actggtactc aggtgataac catctgtcta
     2041 caccacttca tttcgcgaag tgtgtctcgt ttatacgttg aattccgtta aacaagtgct
     2101 cctaccaaat ttggattgct cactcgaggg gtttaccgcg ttccaccttt tatatttcta
     2161 taaaagctac gtcactgtgg cactttcaaa ttactctatc catatcgaaa gacttaggat
     2221 atttcattgc cgtcaaatta atgccttgat ttattgtttc atcaagcacg aacactacaa
     2281 tcatctcaga ctgtgtgagc atggactttc ctctatataa tatagcgatt acccaaaata
     2341 tcacttttaa aattataaca tagtcattat tagtaagaca gttaaacttt tgtatttagt
     2401 aattatttac caaatacagc tttttctaag tttgaaatac gttttaaaat atctacatta
     2461 tttgaagatg tatttgttgt tgtattattc gaagaaaaac ttttattgtc ctgaggtctt
     2521 gatgttgcta cacgtagtct taattcttct aattcttttt taagtttatg attctcttct
     2581 gataatttta caacttcatt attcatatcg gccatttttt gataatcagc aataatgtca
     2641 tctaaaaatg catctacttc ttctcttcta tagccacgag ccatcgtttt ttcaaaatct
     2701 ttttcataaa tatcttttgc tgataatttc aatgaaacat ctgacatttt ttccacctca
     2761 ttagaaactt tgatcttcag accactgtaa gtcattgatg aatgctgtta attcatcgaa
     2821 cgtcacaata tcacaagtat agtttgtttt atccataaaa tcaactaaca tctgcttgaa
     2881 gaacttagga ctcgcctctt gttcctcatc ataaatgagc aatgtttgat ccgaatgttc
     2941 aagcataaat tgatctgctt gtttaaattg aaaaggacct tgatacgacg tatgaaaaat
     3001 actatcaaca taatctgcat gcttaattat gttggcatac ttactttgat tatgttcatt
     3061 ccacttttct gtatgtcctt ggaacggtgt aattacagca aactttaacg aatcatatgt
     3121 tcgttgtaat tcaataacaa cttctgcagt ccataattct atacccattt gcccttgtat
     3181 taacacccat tctaatcctt catccaacag ttgttcaatt ttatgtttta taaattgttt
     3241 taaataatgt acttcaggtg cgtcatcttt aaaaatgttt aattcgaatg atttgtaacc
     3301 tgttacataa actgttttaa ccatcagtac cctcttttgt tacgccatct aatatatttt
     3361 gtaaatcata ttgaacactt ttaagctttt ctataaataa ctttcgactt gttcgcttaa
     3421 aatgacattc gacagaaagt tgttcaatgt tagcaatcag tagctcaaat ttccttgaat
     3481 tcatataagg tacttctata ataaattcac gatgtaattt gatctcattg agtatgctat
     3541 caatatgttc agtatatggc tttacagttt ggtaaaaatc atgatcttgt tgttgtgatt
     3601 tcacattttc aaaattttgt tgcatgttgt taacttcata aattagtgat tcgactacat
     3661 cattcatgag gacgcctcct acatttttta atttatcaca atatactgta ttcgtcatgt
     3721 tttaacactc tatataattt gatttaacta ttttttcaaa tgtgttatct gttaaatcaa
     3781 gtaaatctaa aaacttccta tataa
//
LOCUS       DAMQWL010000171         3758 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.177, whole genome shotgun sequence.
ACCESSION   DAMQWL010000171 DAMQWL010000000
VERSION     DAMQWL010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.177"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..223)
                     /gene="nrdH"
                     /locus_tag="PF788_002565"
     CDS             complement(<1..223)
                     /gene="nrdH"
                     /locus_tag="PF788_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HDG6304802.1"
                     /translation="MSEIIVYTQNDCPPCTFVKNYLNEHHIDFEERNINNQQYRNEMI
                     DFDAFSTPFILLNGNPMYHVDLDEINKVLN"
     gene            421..1782
                     /locus_tag="PF788_002566"
     CDS             421..1782
                     /locus_tag="PF788_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDG6304803.1"
                     /translation="MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKND
                     LQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAF
                     FFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKN
                     GKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKK
                     ALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDE
                     KTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCF
                     VISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGY
                     MRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGE
                     IEK"
     gene            1779..2798
                     /locus_tag="PF788_002567"
     CDS             1779..2798
                     /locus_tag="PF788_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDG6304804.1"
                     /translation="MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKI
                     NHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSF
                     YAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLS
                     PFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFL
                     SLRIQNSEHFYSAVFDYWWMFGISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFG
                     YGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYV
                     EGKKS"
     gene            2931..3593
                     /locus_tag="PF788_002568"
     CDS             2931..3593
                     /locus_tag="PF788_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HDG6304805.1"
                     /translation="MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDI
                     ATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQN
                     DYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAG
                     QSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIA
                     TR"
BASE COUNT         1175 a          531 c          699 g         1353 t
ORIGIN      
        1 tatttaatac tttgttgatt tcatcaagat caacatggta cattggattg ccattcaaca
       61 aaataaacgg agttgaaaaa gcatcaaaat ctatcatttc gtttcgatat tgttgattgt
      121 tgatatttct ctcttcaaaa tcaatgtgat gctcatttag ataatttttt acaaatgtac
      181 aaggtggaca atcattctgc gtataaacga ttatttctga catgtatcat gctccttcgt
      241 gctttattct aatgtaatat acacaattat acattgaaat tcaaatttgt gaacacattg
      301 tgaactgaca taaattatac acaatttcat agcgcataat gttttaaaaa tacacattat
      361 agcaattata attaagttca ttgtgttgtc atcaaaaaaa gaaaaaggtg atgtttttaa
      421 atggatacag ttgaaatcag tcggtttttg acagctatga ctttagcagt tcatatcatt
      481 tttgcaacga ttggtgttgg tatgccttta atgttcgcaa ttgcagaatt tttaggtatt
      541 cgcaaaaatg atcttcaata tatagctatg gccaaaagat gggctaaagc ttatacaatt
      601 actgtagcag tgggagttgt tacaggtaca attataggac ttcaattatc attgatttgg
      661 cctacattta tggaaatggg tggacacgtt attgcacttc cattatttat ggaaacattt
      721 gcgttcttct ttgaagctat tttcttaagt atatatttat atacttggga tcgttttaaa
      781 aataaatgga cacatttctt aattagtata ccagtaatta ttggtggctc tttctcagca
      841 ttcttcatta cttcagtgaa ttcatttatg aatacgcctg caggttttga gttgaagaat
      901 ggaaagatgg tcaatgttca acctatagaa gcgatgttta acccatcgtt tatagttcga
      961 tcatttcacg taattactac agccggtatg acgatggcat ttgttattgc atcaatagca
     1021 gcttttaaat tattgcgtaa tcgtcaacct aaagatactg tctaccataa gaaagctttg
     1081 aaaatgtcta tgatagttgg attcttttca acattacttt ctatgttggc aggggattta
     1141 tctgcaaaat ttttgcataa attccaacct gaaaaattag cagcttatga atggcatttc
     1201 gatacatctt cccatgccaa attattatta tttggtgtgt tagatgaaaa gactcagcaa
     1261 gttaaaggtg cgattgaatt acctggacta ttgagtttct tagcagataa tagtgtcaaa
     1321 actaaagtac aagggttaaa tgattttcca aaaagtttac atccgcctat gatcgtccat
     1381 tatttctttg atttaatggt aacgatggga attttatgtt ttgtcatttc aggtgtttat
     1441 gtcttaactt taatgtttaa aaagcttaga aagttttcta ctcataaatg gatgctttat
     1501 ggaatattat taacaggccc agcttcaatg ctagctatag aatttggatg gttcttaaca
     1561 gagatgggta gacagccttg gattgttcgt ggttatatgc gcgtggcaga agcagcaaca
     1621 caagcaggcg gaataacctt cgttacaatt ttatttggca tattgtacat cattttaatg
     1681 tatacatgtg catacgtatt aattcgtatg tttaaaaata aaccggcgta tgaagatgta
     1741 aatcgtttag ccaagaagca aggaggagaa atagaaaaat gatttatgca tttataggta
     1801 taacagtgtt atggttgttt ttattttgct atatcattat tgcttctata gattttgggg
     1861 caggtttctt cgcattgcat tcaaagttaa ctggtgatga aaagaaaatt aatcacttaa
     1921 tttcacgtta tttaaaccca gtttgggaag ttacgaatgt attctttgtt ttcttcttcg
     1981 taggattcgt aggtttcttt ccagagtcaa tcaaatattt aggcacggta ttgttaatac
     2041 caggttcaat agcactgatt atgatatcgt tgagaaacag tttttatgca tttgaaaatt
     2101 atggtcaaga tacaaaatta gcatggatga tcatgtatgg ggtaagtgga ttattaattc
     2161 cagcttcatt atctactgct ttaactatta cagaaggtgg ctatattaat gttcgaaaca
     2221 atgttatcga tctagattgg gtgcagttat tattaagccc atttgcttgg tctgtagtat
     2281 tcttggcaat tatttcagtt ttatatattt catcaggatt tttgacatat tatgctaaaa
     2341 aagcaaatga cgaaccagca tataatttaa caagacaatg gcacatattt ttagggccgc
     2401 cgatgattat catttgttta ttcgtatttc tatcattacg cattcaaaat tctgaacatt
     2461 tttattcagc tgtttttgac tattggtgga tgtttggtat aagtttctta ttctttgcat
     2521 tagcttcatt gttaacattc tttaagaaaa aacatggttt ggcttttgta tttgttattt
     2581 tacaaatgat gttcgcgttc tttggctatg gaattagtaa attgccatac cttttatatc
     2641 cgtttgtaaa aattacagat gcatatgtta atccagaaat gggctggaca ttagtgattg
     2701 tctttatttt aggtttactt ttattacttc catcgttaat attattatta agattatttg
     2761 ttttcgacaa agaatatgtt gaaggaaaga aatcataagt tgagacgata ccccaacttt
     2821 catttacttg cattactgca tttagataat ttagttgggg tactcattta taataatttt
     2881 aaatttatat tttcaatgaa ttgatgaaaa tcatttaatg gagggcgagt atgggtaaag
     2941 aatatgtagt catcggtcta ggtcgttttg gaggtagtat cgttcgtgag ttgaatgcat
     3001 tagacatgga tgtaatggcc atcgaccatg atgaaaatag agtgaatgaa tatagtgata
     3061 tcgctactca tgcggttgtt gcagacacta cagatgaagc agttatgaaa agtttaggta
     3121 tccgtaactt tgatcatgtc attgtggcaa ttggtgaaaa tattcaatca agtacgttga
     3181 cgactttaat tttaaaagag ttaggtgtaa aaaaagtaac tgctaaagca caaaatgatt
     3241 atcatgcaaa gattttaaat aaaattggag cagatacggt tgtgcaccct gagcgtgata
     3301 tgggtagacg tattgcgcat aatgttgcga gtgcaagtgt acttgattat cttgagttgg
     3361 cagacgagca ttctattgta gaattgaaag caactgaaaa gatggcgggg cagtctatca
     3421 ttgatttaga tataagagca caatatggaa ttaacattat tgcaattaaa cgaggcaaag
     3481 agttcatcat ttcaccaaat ccaaatatta atttagaaat aggtgatatt ttaatcatga
     3541 ttggacatga taatgattta aatcgctttg aaaaaaatat tgcgacgaga taatcgggag
     3601 tgggacagaa atgatatttt ctcaaaattt atttcgtcgt cccaccccaa cttacattgt
     3661 ctgtagaaat tgggaatcca atttctcttt gttggggccc acaccccaac tcgcattgcc
     3721 tgtagaattt cttttcgaaa ttctctatgt tggggccc
//
LOCUS       DAMQWL010000172         3738 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.178, whole genome shotgun sequence.
ACCESSION   DAMQWL010000172 DAMQWL010000000
VERSION     DAMQWL010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3738
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.178"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(254..403)
                     /gene="rpmG"
                     /locus_tag="PF788_002569"
     CDS             complement(254..403)
                     /gene="rpmG"
                     /locus_tag="PF788_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDG6304806.1"
                     /translation="MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTL
                     HRETK"
     gene            complement(494..2011)
                     /locus_tag="PF788_002570"
     CDS             complement(494..2011)
                     /locus_tag="PF788_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000082539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDG6304807.1"
                     /translation="MSQQDKKLTGVFGHPVSDRENSMTAGPRGPLLMQDIYFLEQMSQ
                     FDREVIPERRMHAKGSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERG
                     AADAERDIRGFALKFYTEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDA
                     QNNWDFWTGLPEALHQVTILMSDRGIPKDLRHMHGFGSHTYSMYNDSGERVWVKFHFR
                     TQQGIENLTDEEAAEIIATDRDSSQRDLFEAIEKGDYPKWTMYIQVMTEEQAKNHKDN
                     PFDLTKVWYHDEYPLIEVGEFELNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQG
                     RLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPN
                     NHGKFDSQPEYKKPPFPTDGYGYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTA
                     NAMEGVTDDVKRRHIRHCYKADPEYGKGVAKALGIDINSIDLETENDETYENFEK"
     gene            2215..3669
                     /locus_tag="PF788_002571"
     CDS             2215..3669
                     /locus_tag="PF788_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDG6304808.1"
                     /translation="MEDNKMNRSLNSRHISMIAIGGAIGTGLFVATGNIISQAGPGGA
                     ILAYLVIGVMLYFLMSSIGELATFYPVSGSFSSYSTRFIDSSLGFTMGWLYWALWSLV
                     TSVDVIVASNVLYFWDTFKFFHPITWSLIFITILLLLNIFSVKSFGETEFWLSLIKVL
                     TIIVFVIFGFLMIFGILGGHTYGFENYTKGQAPFVGGISGFLGVLLVAGFSVGGTEVV
                     AVTAGESDDPKKSMPKAIKQVFWRILLFYVLSIAVIGAIIPYTDPSLLRASSSISQSP
                     FTIVFDRVGIAFAASVINAVILTSLLSAANSGVYTTGRMLYSLSSDKKAPQFLSKLNK
                     TTKLPLRALLTTYAVVVIVIIYANFNSNAVFNLLEIIGSMIIVVWGSSIWSQIRLRQA
                     IKKQGQDPNKVLPYKAPFYPLGPIIVITTLLFLLFGGSVEYILKDQWLNAFKNFLPLI
                     ILALIYFIHKIIHKTKFVKLETINLKPHDYDNQK"
BASE COUNT         1152 a          676 c          570 g         1340 t
ORIGIN      
        1 tttaaattct actatattaa atactctttc aagcattcgc taacaaagtg actttataaa
       61 atcagtaatc tatttccttc tataaatatt ctcaaatttt aataaagtaa caactaatat
      121 aatcatatat tgttctaccg atgaaactca atccattaat cactcttcac aaaaatttca
      181 taaaaaagcg agctccccaa tataataggt aagcccgctt tattttcaaa tcgtcgtatt
      241 tgaatgataa gaattactta gtttcacgat gtaacgtata tttgtttaat cttgggcaat
      301 attttttcat ttcaatacgc tcaggattat tacgtttatt tttagtagtg atatagttac
      361 gatcgccaca ttctgtgcat gctaatgtta cgtttacgcg cacgttaaac accctctctt
      421 gttaggaatc tttacgattt attatgatat cataaactgc tcaactacgc aatatagaaa
      481 ctacatatca aatttatttt tcaaagtttt cgtatgtttc atcattttca gtttcaagat
      541 caatagaatt tatatcaata cctaatgctt ttgcaacacc tttaccatat tctgggtcag
      601 ctttgtaaca atgacgaata tgacgtcgtt taacatcatc cgttacgcct tccattgcat
      661 ttgctgtatt tgtaaaaatt ctttctttag cgtcctctga ttgtaatcta aacaatttac
      721 ctggttgttc aaaataatta tcatcatctt gacgttgatt atattcatag ccgtatccat
      781 cagttgggaa tggtggcttt ttatattcag gttgagaatc aaatttacca tggttatttg
      841 gataataatg tgttcctcca ccttggttat tgtcaactac gcgcatttga ccatctctac
      901 taaaaggaca aatattttca ataccaacac ctttaggttg gtttacagga atctgccaat
      961 gattaactcc taatcgatat ctttgcgcat cgccatatga gaataaacgc ccttgcagca
     1021 ttttgtctgg agaaaaatct aatcctggaa taatattagt tggtgcaaac gcagcttgtt
     1081 caacatccat aaagtaatta tctggatttc tatttaattc aaactctcca acttcaatta
     1141 gaggatactc atcgtgatac catacttttg ttaaatcaaa tggattatct ttatggtttt
     1201 tagcttgttc ctcagtcatt acttgaatat acattgtcca ttttggataa tcaccttttt
     1261 caatggcttc gaataaatcg cgttgagatg aatcacgatc tgtagctata atttcagcag
     1321 cttcttcatc agttaagttt tcaatacctt gttgcgttct aaaatggaat ttaacccaaa
     1381 cacgttcacc agaatcatta tacatagagt atgtgtgaga accgaaccca tgcatatgac
     1441 gtaaatcttt aggaatccct ctatctgaca ttaagatcgt tacttggtgc aatgcttctg
     1501 gaagacccgt ccagaaatcc cagttatttt gtgcatctct catatttgtt ctaggatctc
     1561 gtttcaccgc acgatttaaa ctaacaaata actttggatc tctaaagaag aatactggtg
     1621 tgttattccc tactaaatcc cagttccctt cttcagtgta gaactttaac gcaaatcctc
     1681 gaatgtcacg ctccgcatca gcagcaccac gttctcctgc tacagtagag aaacgggcaa
     1741 acatttcggt ttgcttacct atttcagaga atattttagc attcgtatat tttgttatat
     1801 ctttagttac agtaaatgtc ccaaatgcac cagaaccttt ggcatgcatt cgacgttctg
     1861 gtattacttc tctatcaaat tgagacattt gctctaaaaa gtaaatatct tgcattaaaa
     1921 gaggtcccct aggccctgct gtcatactat tttctcggtc tgatactgga tgcccaaaaa
     1981 caccagttaa ctttttgtct tgttgtgaca tagtcatccc tccacaattt ataataatta
     2041 taatttaata catattataa tttaacccca tcaaaattac aattaaacat gctcaagatg
     2101 attaaaaaat cagaaaattt taattttttc gctttacagt actaaatagt tattgaatag
     2161 tacacttaaa aagcttacaa taatgggtat atttaaatag atgggagact aaatatggaa
     2221 gataataaaa tgaaccgtag tcttaactca agacacattt ccatgattgc tataggtggt
     2281 gcaattggga ctggtctatt tgtagctact ggtaatatca tttctcaagc tggtcctgga
     2341 ggcgctatac tcgcttatct tgttattggt gtcatgctat atttcttaat gtcatcaatt
     2401 ggagagttgg caacatttta tccagtatca ggttcattca gctcttattc aacacgcttt
     2461 attgactcat ctcttggctt taccatggga tggttgtatt gggcattgtg gtcattagtt
     2521 acaagtgttg atgtcatagt agcgtcaaat gtgctttatt tctgggacac atttaaattt
     2581 ttccacccca ttacttggag cttaatcttt attacaattt tactattatt aaacattttt
     2641 tctgtaaaat catttggaga aactgagttt tggttatcat tgattaaagt gttaacaatt
     2701 atcgtattcg ttatttttgg ctttttaatg attttcggta tcttaggtgg tcatacatat
     2761 ggatttgaaa actatacaaa aggccaagca ccgtttgttg gtggtatctc tggtttctta
     2821 ggcgtattat tagtcgccgg attttcggtt ggtggtacag aagtagtagc agtaactgct
     2881 ggtgaatcag atgaccctaa aaagtctatg cctaaggcaa ttaaacaagt attttggcgt
     2941 attcttttat tctatgtctt atcaattgca gtaattggtg caattattcc gtacacagat
     3001 ccatcattat taagagcaag tagttcaata agtcaaagcc catttacaat tgtattcgat
     3061 agagtaggca tagcctttgc agcatcagta atcaacgcgg ttattttaac ttcattatta
     3121 tccgctgcaa attcaggtgt ttatacaaca ggcagaatgt tgtattcctt aagttcagac
     3181 aaaaaagcac cccaattttt aagtaaatta aacaagacaa ctaagttacc tttaagagca
     3241 ttattaacta cttatgcagt cgttgttatt gttattattt atgcaaactt taattcaaat
     3301 gccgttttta atttacttga aattattggt tcaatgatta tagttgtttg gggatcaagc
     3361 atttggtcac aaatacgatt gcgacaagct attaaaaaac aaggtcaaga ccctaataag
     3421 gtcctaccat ataaagcacc tttttatcca ttaggaccaa tcattgtcat cactacacta
     3481 ttattcttgc tatttggtgg ctcagttgaa tatattttaa aagatcaatg gttaaatgct
     3541 tttaaaaact ttttaccttt aatcattcta gcgttgattt actttattca taaaatcatt
     3601 cacaaaacaa aatttgtaaa gctagaaaca attaatttaa aaccacacga ttatgacaat
     3661 caaaaataaa taaattctca tacggcagat gctttagatt atctatagca tttgccgctt
     3721 tttaatggtg taaagcag
//
LOCUS       DAMQWL010000173         3721 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.179, whole genome shotgun sequence.
ACCESSION   DAMQWL010000173 DAMQWL010000000
VERSION     DAMQWL010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.179"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(518..1543)
                     /locus_tag="PF788_002572"
     CDS             complement(518..1543)
                     /locus_tag="PF788_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low specificity L-threonine aldolase"
                     /protein_id="HDG6304809.1"
                     /translation="MISFENDYLEGAHEKVLKRLVDTNLVQASGYGFDQFTAQAIEKI
                     KDTIDCPNATIRFLVGGTQTNQVVINSMLESYEGVISADTGHVAVHEGGAIEYSGHKV
                     ITIPSKEGKVSASDVETYMETFKSDFKKDHMVFPGMVYISHPTEYGTLYSKSELEELC
                     KVCKQYQLPLFMDGARLGYGLMSDQSDMTIKDIAKYCDVFYIGGTKIGALCGEAIVFT
                     KNNEPKQFTTRIKHHGALLAKGRLTGIQFLELFTDNLYFNISRHAIEMANKMKDGFKN
                     KGYRLYFDSPTNQQFFILSNEKIAELEQKVKFAVWEKYDDQHRVVRFATSWATTEENL
                     NKLLELI"
     gene            1813..2010
                     /locus_tag="PF788_002573"
     CDS             1813..2010
                     /locus_tag="PF788_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008530240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304810.1"
                     /translation="MEQIKLKTFTAETLELLEKNINAFLSSEEATNLKLVNITIKEIE
                     ERTFPNNEEEFNAILTLSVNK"
     gene            2068..3549
                     /gene="cls"
                     /locus_tag="PF788_002574"
     CDS             2068..3549
                     /gene="cls"
                     /locus_tag="PF788_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HDG6304811.1"
                     /translation="MRFTFSNDLGTLFTIILAIGFIINLVLAFIIIFLERNRRTASST
                     WAWLFVLFVLPLIGFILYLFFGRTVSARKLNKNNGNVLTDFDGLLKQQIESFDKGNYG
                     TDNKQVQKHHDLVRMLLMDQDGFLTENNKVDHFIDGNDLYDQVLKDIKNAKEYIHLEY
                     YTFALDGLGKRILHALEEKLKQGLEVKILYDDVGSKNVKMANFDHFKSLGGEVEAFFA
                     SKLPLLNFRMNNRNHRKIIVIDGQLGYVGGFNIGDEYLGLGKLGYWRDTHLRIQGDAV
                     DALQLRFILDWNSQAHRPQFEYDVKYFPKKNGPLGNSPIQIAASGPASDWHQIEYGYT
                     KMIMSAKKSVYLQSPYFIPDNSYINAIKIAAKSGVDVHLMIPCKPDHPLVYWATFSNA
                     SDLLSSGVKIYTYENGFIHSKMCLIDDEIVSVGTANMDFRSFELNFEVNAFVYDENLA
                     KDLRVAYEHDITKSKQLTKESYANRPLSVKFKESLAKLVSPIL"
BASE COUNT         1328 a          560 c          548 g         1285 t
ORIGIN      
        1 cggtgctatt ttttgcgctt ttataacaac taaggataca agacacataa cttcaacaat
       61 atcctcatct aaacctatcg atttcctaag ctcaatttta aacacaaagt ttatttgaaa
      121 tgatgcacac ctataaaaat cttaatcatc gaaaagtcac aaacatctcc atattaaaaa
      181 cttaaatagt gcattccatt taaactaaac atcgatattc ctaccaatat agacttagta
      241 attcgattgt taatacatta ctttcataaa ataactacaa ccatcataat acttctcaaa
      301 tgtcgtcaaa ttaaagtaaa tacagcacaa attaacattt ttaaatatat aaaataaaac
      361 aagatactca ataatctgta gtaccttgtt ttggaataat gtaattttat atcatcaacg
      421 gctacaaatg agcagtttca tatataaata aacacatcta ctcaactgat cttaattaat
      481 taataaatga tttaccagat gacatataac agcattatta gattaattct aatagtttat
      541 ttaaattttc ttcggttgtc gcccaactgg ttgcgaatct aacaacacga tgttgatcat
      601 cgtatttttc ccaaacagca aatttaactt tttgttctaa ctctgctatt ttctcgttac
      661 ttaaaataaa aaattgttga ttggttggag aatcaaagta aagacgatag cctttatttt
      721 taaacccgtc tttcatctta tttgccattt cgatagcatg tctgcttata ttaaaatata
      781 aattgtccgt aaataattct aaaaattgta tgcctgttaa ccgtcctttt gctaaaaggg
      841 caccgtgatg cttgattcga gtggtaaatt gtttcggttc attatttttc gtaaaaacaa
      901 tggcttcccc gcataatgca cctatcttcg taccacctat ataaaataca tcacaatatt
      961 tagcgatgtc tttaatagtc atatctgatt ggtcactcat caatccatac cctaatcgtg
     1021 caccatccat aaataatgga agctgatatt gcttacatac tttgcataac tcttccaatt
     1081 ctgatttaga gtataatgtg ccatattctg taggatgaga aatatatacc attcctggga
     1141 ataccatatg gtccttttta aaatcacttt taaatgtctc catgtaagtt tcaacatctg
     1201 aagcactaac ttttccttcc ttagagggta tagtaattac tttatgtcca ctatattcaa
     1261 ttgcaccgcc ctcatgcaca gcaacatgac cagtgtctgc tgaaatgacc ccttcgtaac
     1321 tttctaacat tgaattaata acaacctgat tggtttgtgt tccacctact aaaaaacgaa
     1381 ttgtagcatt tggacagtca attgtatctt taatcttttc aattgcctga gctgtgaatt
     1441 gatcaaagcc atatcccgaa gcttgtacaa gatttgtatc tactaatcgt tttaatactt
     1501 tttcatgagc accttctaaa taatcatttt cgaatgaaat cactacattt ccccctaaaa
     1561 ctaatatcaa cattttaata agataaacca atttcaaaac tagttcgata tttaaaatgt
     1621 attatgaatg gttaaagttt gtatcgcatt atcgcgaagt tgaataaata tattatacat
     1681 caaacaatac attatgaaaa ttaattaatt ttttatcaca gcgacttttc atgctggaac
     1741 acatgtatta atgattgaat tttactgtta aaagttctat gatttaggaa atagagaaaa
     1801 gaggggattt aaatggaaca aattaaactt aaaactttta cagctgagac tttagagtta
     1861 ttagaaaaaa acattaatgc ttttttaagt tctgaagaag ctacaaattt aaaattagta
     1921 aatattacta ttaaagaaat agaagaaaga acattcccaa ataatgaaga agaattcaat
     1981 gcaattttaa ctttatctgt gaataaataa tatgacgtga aaggtgcaaa atgttttttt
     2041 gtgcctttct ttataggaga aaagactatg cgatttacat tttcaaacga tttaggaacg
     2101 ttatttacta ttattttagc cattggattc atcattaatt tagtattggc ttttattatt
     2161 atctttttag aaagaaatag gcgtacagcg agttcaactt gggcatggct atttgtactt
     2221 tttgtcttac cattgattgg ttttattctt tacttgtttt ttggtagaac cgtttcggca
     2281 cgcaaattga ataaaaacaa tggtaacgtg ttaacggatt tcgatggact tttaaaacaa
     2341 caaatagaaa gctttgataa aggtaattat ggtactgata acaaacaagt tcaaaaacat
     2401 catgatttag tacgtatgct tttgatggat caagatggtt ttttaactga aaataataaa
     2461 gttgatcatt tcattgatgg aaatgattta tatgatcaag ttttaaaaga tattaaaaat
     2521 gcaaaagaat atatccattt agagtactat actttcgctt tagatggttt aggtaaaaga
     2581 attttacatg ctttagaaga aaaattgaaa caaggtctag aagtaaaaat attatatgat
     2641 gatgttggat ctaaaaatgt taagatggca aattttgatc attttaaatc gttaggtgga
     2701 gaagttgaag cattttttgc ttcaaaatta ccgttattga atttcagaat gaataataga
     2761 aatcatagaa aaatcatcgt aatcgatggt caactaggtt atgtcggagg atttaacatt
     2821 ggtgatgaat atctaggatt aggaaaatta ggatattgga gagatacgca tttacgtata
     2881 caaggggatg cggttgatgc actgcagttg cgatttattt tagactggaa ttcgcaagcg
     2941 caccgtccac aatttgaata tgatgttaag tatttcccta aaaagaacgg accattgggc
     3001 aattcaccaa ttcaaatagc tgcaagtggc ccggctagtg actggcatca aattgaatac
     3061 ggttatacaa aaatgattat gagtgcaaag aaatctgtat atttacaatc accatatttc
     3121 attccggata attcatatat aaatgccatt aaaattgctg ctaaatcagg tgtagatgta
     3181 catttaatga ttccatgtaa gccagatcat ccattagtat attgggcgac attttcaaat
     3241 gcctctgact tattatcaag tggtgttaaa atttatacgt atgaaaatgg atttatacat
     3301 tctaaaatgt gcttaattga tgatgaaatc gtatcagtgg gcacagcaaa tatggacttt
     3361 agaagttttg aattaaattt tgaagtaaat gcctttgtat atgatgaaaa tcttgctaaa
     3421 gatttaaggg tggcttatga acatgatatt acaaaatcaa aacaactaac caaagaatca
     3481 tatgccaata gaccgctgtc tgttaaattc aaagaatcgt tagcaaaatt agtttcgcca
     3541 attttataat ttatttgtaa ggagtctcga ttatagaggc tctttttatt ttgcccaaaa
     3601 ttaaaataac gataaatata ttatgtaaat ctaataatga catttgtcat ttcaaatcta
     3661 tgacaaagtg ttctatttta aatctaataa atttactaat attaaattaa gaaaaaaata
     3721 g
//
LOCUS       DAMQWL010000174         3701 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.180, whole genome shotgun sequence.
ACCESSION   DAMQWL010000174 DAMQWL010000000
VERSION     DAMQWL010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3701
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.180"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            64..1554
                     /locus_tag="PF788_002575"
     CDS             64..1554
                     /locus_tag="PF788_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000554504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDG6304812.1"
                     /translation="MHRESKYIEYKKSRKGLSNDIWSTYSAFANTEGGTIYLGIEEKK
                     IEDKKVFVSVGVEDPEKMIEDFWNALYGRSKVSQNILSNKDVKIVNIENKACIEIHVP
                     EAPYSKKPIYVDNKKDLVYKRVDDADRIATEEEYKFMIVNSQDDIDTELLDNYDMSDL
                     NHESIENYRKLLLKNTNDERYANMSQLDLMIDLGAYRKDRSSKDKQYKMTTACLLFFG
                     KYNAISDRFPGFQLDYFKKTNYLDTDWKDRISSGDLGNEDLNVYSFFEKVLIKLTDNI
                     EESFSLNDGLTRQNYARDLKVAIREALVNTLMHAYYDTKQSIKIVNCEDFIEFYNPGN
                     MRINKEDFIHGGHSKDRNSILSTLFRRVGYSEKAGSGGPRIFDVVNRHKLKTPEIELT
                     DMDTNVVLWKQDLMKEFEKYPELDKKVIKYIIDYGSISKGEALKMENMTEYQFRNILK
                     KLKDDNLIKKEGEGPATKYVLIESKEADILRTKKVIKSLESFFRNK"
     gene            complement(1927..3245)
                     /gene="cstB"
                     /locus_tag="PF788_002576"
                     /pseudo
     CDS             complement(1927..3245)
                     /gene="cstB"
                     /locus_tag="PF788_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002488497.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="persulfide dioxygenase-sulfurtransferase CstB"
     gene            3301..3438
                     /locus_tag="PF788_002577"
     CDS             3301..3438
                     /locus_tag="PF788_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001791883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304813.1"
                     /translation="MELKLLNKLDDDQLDLEFLQDNGLKGNVQGPMTLKEPLKSYIQK
                     S"
     gene            3435..>3701
                     /locus_tag="PF788_002578"
     CDS             3435..>3701
                     /locus_tag="PF788_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDG6304814.1"
                     /translation="MKTNILNLDNELENTEYVEGKPYVQYGIKYERNQALRNEAIKIH
                     GTTCKVCGFDFKAKYGDLGEGFIEIHHLKPMFSIKREIKVNPQKD"
BASE COUNT         1396 a          448 c          657 g         1200 t
ORIGIN      
        1 tatggtagac ggtttgagta aattaatgga gtattttaat atttatggtt tggaggaatt
       61 gcgttgcata gagaaagtaa atatatagag tataagaaat cacgaaaagg attatctaat
      121 gatatttggt ctacgtatag tgcttttgca aatactgaag gtggtactat atatttagga
      181 attgaagaaa aaaagatcga ggacaaaaaa gtctttgttt cagttggtgt tgaagatcca
      241 gagaaaatga ttgaagattt ttggaatgca ctatatggaa gaagtaaagt tagtcaaaat
      301 attttatcaa ataaagatgt taaaattgtt aatattgaaa ataaagcgtg cattgaaatt
      361 catgtaccag aagcgcctta ttcgaagaaa ccgatatatg tagataataa aaaagattta
      421 gtatataaaa gagttgatga tgctgataga attgcgactg aagaagagta taaattcatg
      481 attgtaaatt ctcaagacga tatagataca gaattattag ataactatga catgtctgat
      541 ttaaatcacg aatctatcga aaattatagg aaacttctat taaaaaatac taatgatgag
      601 agatatgcga atatgagcca actggattta atgatagatt taggagcata tagaaaagat
      661 agaagttcga aagacaaaca gtataaaatg actacagcat gtttattatt ctttggtaag
      721 tataatgcga ttagtgatag attcccagga tttcaattag attattttaa gaaaacaaat
      781 tacctagata ctgattggaa agatagaata tcaagtggag atttaggtaa tgaagattta
      841 aacgtgtata gtttttttga aaaagtattg ataaaattaa ctgataacat tgaggaatca
      901 tttagcctaa atgatggttt gactagacaa aattatgcaa gagatttaaa agtagcaatt
      961 cgcgaagcac tggttaatac attaatgcat gcgtattatg atactaagca aagtattaaa
     1021 atagttaatt gtgaagattt tatagagttt tataatccgg gtaatatgag aataaataaa
     1081 gaagatttta ttcatggagg gcattcaaag gacagaaata gtatattatc gacgcttttc
     1141 agaagagtag gatattcaga aaaagctgga tctggaggac caaggatatt cgatgtagtt
     1201 aatagacata agcttaaaac gcctgaaata gaattaacgg acatggacac taatgtagta
     1261 ctttggaaac aagatttaat gaaggagttt gaaaaatatc ctgagttaga caaaaaagta
     1321 ataaagtata ttattgacta tggatcaata agtaagggtg aagccttaaa aatggaaaat
     1381 atgacagaat atcagtttag aaatatttta aaaaaactaa aagatgataa cttgataaaa
     1441 aaagaaggtg aaggtccggc tactaaatat gtgttaatag aatcaaaaga agctgatata
     1501 ttgcgaacta aaaaagtaat taaaagttta gagtctttct ttaggaataa ataaaaaaac
     1561 aagagatagg tgcgaagtgt ttggattata caaatgcttc gcatcttata tttattaata
     1621 aatatcatag aaaaccgtat cattaaccga tacgcagaga tgcggttttt tagacacttc
     1681 ataaagggat tttgaacgta tcagaacata tgaggtttat aggaattgct gttatgtttt
     1741 ttgatcacat caataaacaa aaaaggtatg tactatgtaa aatatttatt aaatgatata
     1801 aagcgagggt atataaatga tttttaaata gatatttatc caataatata aaaaggaact
     1861 ataagctata tctaaaagct atatctaact acttatagtc cttcttcatt agtataaata
     1921 taattattaa gaaaggtata tatctttgta accttcgttt acattaataa tgttgtgata
     1981 acctttgtgt tctaaaatac caatagctat agaacttcta atgccagact gacagtctac
     2041 ataaataaca tcgtttctat tgaaaggtaa atctgtttct aaaagtttgc cgtgtggcac
     2101 atgaaccgct tgggataagt ggccattatt ccattcatta tcattacgta catctaagac
     2161 atgtgcttca ttaccagtta tgtctttact atgaacagat tgtgtttgaa tttgagcttg
     2221 tggtaactga tatccagaca cattatcata tccaataagt tgtaaagtat gttatgtgtt
     2281 gcttttgaaa caaggtgata gtctccaatc aagttaattt cttgattata gtttagatac
     2341 cagccaattt gattgatgaa atttttatca tatggaatat tgattgtacc ttcaatatgt
     2401 ccaccatgat aagcctcctt actgcggaga tcaaaagtta atctgtttgt acttgtagct
     2461 ggataaaccg tataaggttg atataaattc ataccgaatt gattaatttt tttcatttgt
     2521 gcaaaatgat gtggtggtgc aggttggtca gaaatgagtt tatcgataaa ggtagcttca
     2581 ttattttcag aaaaagccca gttcgtttgt ttttcatagc caagcgtaga tgttggaata
     2641 gcacctaaag atttaccaca aggactacca gcgccatgac caggccaaat ttgaatgtag
     2701 tctggcaagt ctttaatact ttcaatagat ttaaacattt gttttgcgcc tatttcagat
     2761 aatccttcta ctttaacagc tttttctagt aaatcaggtc taccgatatc tcctacaaaa
     2821 ataaaatcac cactgaatag tcccattgga acttgtgctc cagcaccttc gtcagtaagt
     2881 aaaaaactta tactttctgg cgtgtgacca ggtgtatgaa gcacttttaa ttttatattt
     2941 cctacataaa tatcatcatt atgttgaaca aaatgagtgt ggttaggcat atttttataa
     3001 cctaacatgt catcactttc gcccgataca taaatactag catttaactt tatagcaaca
     3061 tctctaattc ctgaaacaaa atttgcatgt atatgtgttt cagctgcatg agtaatggtt
     3121 aaactctctt catcggcaac tcgaatatat gaagataagt cacaaatagg atcaatgatc
     3181 atggcttctc cagttttttg acaaccgatt aaataagatg cttgagataa atgtttatca
     3241 taaattgatg atagtcaatt tgttatcaag ggtgataatt atattaacta tggtaattac
     3301 atggaattaa agttattaaa caaacttgat gatgaccaat tagatttaga atttttacaa
     3361 gataatgggt taaaaggtaa tgttcaaggt cctatgactt taaaggaacc tttaaaaagt
     3421 tatatacaaa agtcttgaaa acgaatattt taaatttaga taatgagtta gaaaacactg
     3481 aatatgtcga aggtaaacca tatgtacagt acggtattaa atatgaaaga aatcaggcat
     3541 taagaaatga agctattaaa attcatggaa ctacatgtaa agtatgtgga tttgatttta
     3601 aagctaagta tggcgattta ggtgagggtt ttattgaaat tcatcattta aaaccaatgt
     3661 tttcaataaa aagagaaata aaagtaaatc cacaaaaaga t
//
LOCUS       DAMQWL010000175         3665 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.181, whole genome shotgun sequence.
ACCESSION   DAMQWL010000175 DAMQWL010000000
VERSION     DAMQWL010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.181"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            245..1504
                     /locus_tag="PF788_002579"
     CDS             245..1504
                     /locus_tag="PF788_002579"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDG6304815.1"
                     /translation="MAQEVIKIRGGRTLNGEVNISGAKNSAVAIIPATLLAQGHVKLE
                     GLPQISDVKTLVSLLEDLNIKASLNGTELEVDTTEIQNAALPNNKVESLRASYYMMGA
                     MLGRFKKCVIGLPGGCPLGPRPIDQHIKGFKALGAEIDESSTTSMKIEAKELKGAHIF
                     LDMVSVGATINIMLAAVYATGQTVIENAAKEPEVVDVANFLTSMGANIKGAGTSTIKI
                     NGVKELHGSEYQVIPDRIEAGTYMCIAAACGENVILNNIVPKHVETLTAKFSELGVNV
                     DVRDERIRINNNAPYQFVDIKTLVYPGFATDLQQPITPLLFMANGPSFVTDTIYPERF
                     KHVEELKRMGANIEVDEGTATIKPSTLHGAEVYASDLRAGACLIIAGLIAEGVTTIYN
                     VKHIYRGYTDIVEHLKALGADIWTETV"
     gene            1593..1928
                     /locus_tag="PF788_002580"
     CDS             1593..1928
                     /locus_tag="PF788_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304816.1"
                     /translation="MEVCPYLEETFKILGRSWNGLIINYLSRCNDCSAHFSDMKRDLK
                     TITPRALSLKLSELAQWELVEKQIISTSPVQIIYVLTEKGKALAEALHPIEAWAQSYV
                     DLTDQRTAK"
     gene            2166..3593
                     /locus_tag="PF788_002581"
     CDS             2166..3593
                     /locus_tag="PF788_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HDG6304817.1"
                     /translation="MRDYTKQYINGEWVESNSNETIEVINPATEEVIGKVAKGNKADV
                     DKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPLSLSERV
                     HYQMGLNHFVAARDALDNYEFEERRGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAA
                     FAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGVFNLVNGDGAGVGNPLSEHPKVRM
                     MSFTGSGPTGSKIMEKAAKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTG
                     QVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNYI
                     NKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYND
                     LDEAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINEAGRKPDLPFGGYKQS
                     GLGREWGDYGIEEFLEVKSIAGYFK"
BASE COUNT         1336 a          486 c          745 g         1098 t
ORIGIN      
        1 attaaaacta aataattgtc aaaacaacgt caatatttag ttgaataatc agactttaga
       61 ccatggtcaa gtggggaaga acagcatata ttagtaaagg tgaatgattt gttattaatc
      121 aatcgaaaat agaaagacaa gattttaacg attaaaataa actattttac aaataaagta
      181 aaattaattt ataatgctaa taatgcaaaa aattaaaaag taatggacaa aggagataaa
      241 tgatatggct caagaggtaa taaaaataag aggtggacgc acactaaatg gggaagttaa
      301 tatcagtggc gcgaaaaaca gtgctgtagc tatcattcct gcaacattat tagctcaagg
      361 acatgtgaaa ttagaagggt taccgcaaat ctctgatgtt aaaactttag tgagtttatt
      421 agaagattta aatattaagg catcactaaa tggtacggaa ttagaagttg atacaactga
      481 aatacaaaat gctgcattac caaataataa agttgaatca ttacgtgctt catactatat
      541 gatgggtgcc atgttaggta gatttaaaaa atgtgtgatt ggtttaccgg gaggatgtcc
      601 acttgggcca cgtccaattg atcaacatat taaaggattt aaagctttag gtgctgaaat
      661 tgatgaatca agtacgacat caatgaaaat cgaagctaaa gagttaaaag gtgcacatat
      721 ttttctagat atggttagcg taggtgcaac aattaacatt atgctagctg cagtttatgc
      781 aacaggacaa actgtaattg aaaatgctgc taaagaaccg gaagtagttg atgttgctaa
      841 cttcttaaca agtatgggag ctaatattaa gggagcgggt acatcaacaa ttaaaatcaa
      901 tggcgtcaaa gaattacatg gttctgagta tcaagttata cctgatagaa ttgaagcagg
      961 cacatatatg tgtatcgctg cagcatgtgg agaaaatgtt atattaaata atattgttcc
     1021 gaaacatgta gaaacattaa ctgctaaatt tagtgaatta ggtgtgaatg ttgatgtaag
     1081 agacgaaaga attcgcatca ataataatgc gccatatcaa tttgttgata ttaaaacact
     1141 agtatatcca ggttttgcta ctgatttgca acagcctatt acaccattat tatttatggc
     1201 aaatggtcct tcatttgtaa ctgatacgat ttatccggag cgttttaaac atgttgaaga
     1261 attaaagcgc atgggtgcaa atattgaagt tgacgaaggc acagcaacga taaaaccatc
     1321 aacattacat ggtgctgaag tttatgctag cgatttaaga gcaggagctt gtttaattat
     1381 tgctggttta attgctgagg gtgtaactac aatttacaat gttaaacata tttatagagg
     1441 ttatacagat attgtagaac acttaaaagc tttaggtgca gatatttgga cggaaactgt
     1501 atagatttat cttgttttgt ggtataataa ttatactgat taaaaaatgg tgttcgttta
     1561 cattctaaat ttattgatga gaggtgaaga tgatggaagt atgtccgtat ctcgaagaaa
     1621 cttttaaaat acttggtaga agttggaatg gattaatcat taattatctc tcaagatgta
     1681 atgactgttc agcacacttt tccgatatga aaagagattt gaaaacaata acaccacgtg
     1741 ctttaagtct taagttgtca gagcttgcac aatgggagtt agttgagaag caaatcattt
     1801 ctacgagtcc agtacaaatt atttatgtgc taactgaaaa aggtaaagcg ttagcagagg
     1861 ctttacatcc aattgaagca tgggcgcaat catatgtcga tttaacagat caacgtactg
     1921 ctaaataatt acatgacgtt taaacatagc attgattata actatttcta agtcttcgca
     1981 ttatttgcga tgatgtggga atagttattt ttatttaaaa atataaaaaa atagatgcag
     2041 caaaatttta aagcatttta ttttgaacat attaaaaggg agcgtatcat aatggaatgt
     2101 aatgtttata tcgtatgcat tacggataaa taatatataa atcattcttg aggagtgaaa
     2161 gaataatgag agactacaca aagcaataca ttaatggcga atgggtagaa agtaatagta
     2221 atgaaacgat agaagttata aatccagcaa ccgaagaagt aatcgggaaa gttgctaaag
     2281 gtaataaagc tgatgttgat aaagccgtcg aggcggcaga cgatgtttat ttagagttcc
     2341 gtcatacatc tgtgaaagaa agacaagcgt tattagataa aattgtaaaa gaatatgaaa
     2401 acagaaaaga cgatattgta caagctatta cggatgaatt aggtgctcct ttatcattat
     2461 ctgagcgtgt ccattatcaa atgggactaa accattttgt tgcagcgaga gacgcattag
     2521 ataactacga atttgaagaa cgccgcggag atgatttagt tgttaaagaa gcaatcggtg
     2581 tatctggatt aattacaccg tggaacttcc ctacaaacca aacatcatta aaattagcag
     2641 cagcatttgc ggctggtagt ccagttgtac ttaaaccatc tgaagaaaca ccatttgcag
     2701 ctgttatttt agctgagatt tttgataaag tcggtgttcc taaaggtgta tttaaccttg
     2761 ttaatggtga tggtgctggt gttgggaatc ctttatctga acatcctaaa gtacgcatga
     2821 tgtcatttac aggatcaggc cctactggtt ctaaaattat ggaaaaagcc gctaaagatt
     2881 ttaaaaaggt atcattagag cttggtggca aatcaccata tatcgtccta gatgacgtag
     2941 atattaaaga agcggctaaa gcaacaacag gcaaagttgt taataatact ggtcaagtat
     3001 gtacagctgg tacacgtgtt ttagtgccta acaaaattaa agatgcattc ttagctgaat
     3061 taaaagaaca atttagccaa gtgcgtgtcg gtaatccaag agaagatggt acacaagtag
     3121 gccctatcat tagtaaaaaa caatttgatc aagtacaaaa ttatattaat aaaggtattg
     3181 aagaaggtgc tgaattattt tatggtggtc ctggtaaacc agaaggactt gaaaaaggat
     3241 actttgcacg tccgacaatt tttattaatg tagataatca aatgacgata gcacaagaag
     3301 aaatttttgg gccagtaatg tcagttatca cttataacga tttagatgaa gcgattcaaa
     3361 ttgcaaatga tacaaaatat ggtttggcag gatatgttat tggtaaggac aaagaaacat
     3421 tgcataaagt agctcgttct attgaagcag gtacagtaga aataaacgaa gcaggtagaa
     3481 agccagattt accatttggt ggctataaac aatctggttt aggtcgtgaa tggggcgatt
     3541 atggtattga agagttctta gaagtgaaat ctatagctgg atattttaaa taaatttgat
     3601 ttttgaatta aaaatcgcaa taaaacagtg cacatgacta attaagtttt gtgtactgtt
     3661 ttaat
//
LOCUS       DAMQWL010000176         3631 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.182, whole genome shotgun sequence.
ACCESSION   DAMQWL010000176 DAMQWL010000000
VERSION     DAMQWL010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3631
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.182"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            66..1865
                     /locus_tag="PF788_002582"
     CDS             66..1865
                     /locus_tag="PF788_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDG6304818.1"
                     /translation="MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEK
                     TPSFTVSEDKQICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQS
                     NSNVQIASDDLQMIEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGF
                     APDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVG
                     YSGRTYTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDT
                     AGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVF
                     VIQLPSGMDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKE
                     LSHDISLMKSSILQQKALNDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYIEPE
                     PIGMAQFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDF
                     YAENDQYNISDAVQYVNSNELRETLISLEQYNLNDEPYENEIDDYVNVINEKGQETIE
                     SLNHKLREATRIGDVELQKYYLQQIVAKNKERM"
     gene            2089..3195
                     /gene="rpoD"
                     /locus_tag="PF788_002583"
     CDS             2089..3195
                     /gene="rpoD"
                     /locus_tag="PF788_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDG6304819.1"
                     /translation="MSDNTVKIKKQTIDPTLTLEDVKKQLIEKGKKEGHLSHEEIAEK
                     LQNFDIDSDQMDDFFDQLNDNDISLVNEKDSSDTDEKLNPSDLSAPPGVKINDPVRMY
                     LKEIGRVNLLSAQEEIELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDL
                     IQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK
                     LIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLG
                     DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGK
                     VFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD"
     gene            3326..>3631
                     /locus_tag="PF788_002584"
     CDS             3326..>3631
                     /locus_tag="PF788_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine(22)-N(1))-methyltransferase TrmK"
                     /protein_id="HDG6304820.1"
                     /translation="MISLNNRLTTVSRFLKQGTIADIGSDHAYLPIYAIQNHLCECGI
                     AGEVIQGPFQAAVKNVAANQLVDRIDVRLGDGLSVIQPEDVIDNITICGMGGPLIAKI
                     "
BASE COUNT         1359 a          472 c          684 g         1116 t
ORIGIN      
        1 aatgatttca tttttgtcga aaattaggta taatagtata actaatgctt aataggtgat
       61 ttaatttgcg aatagatcaa tcgatcatta atgaaataaa agataaaacc gacattttag
      121 acttggtaag tgaatatgta aaattagaaa agagaggacg caattatata ggtttgtgtc
      181 cttttcatga tgaaaagaca ccttcattta cagtttctga agataaacaa atttgtcatt
      241 gttttggttg taaaaaaggt ggcaatgttt ttcaatttac tcaagaaatt aaagacatat
      301 catttgttga agcggttaaa gaattaggtg atagagttaa tgttgctgta gatattgagg
      361 caacacaatc taactcaaat gttcaaattg cttctgatga tttacaaatg attgaaatgc
      421 atgagttaat acaagaattt tattattacg ctttaacaaa gacagtcgaa ggcgaacaag
      481 cattaacgta cttacaagaa cgtggtttta cagatgcgct tattaaagag cgaggcattg
      541 gctttgcacc cgatagctca catttttgtc atgattttct tcaaaaaaag ggttacgata
      601 ttgaattagc atatgaagcc ggattattat cacgtaacga agaaaatttc agttattacg
      661 atagatttcg aaatcgtatt atgtttcctt tgaaaaatgc gcaaggaaga attgttggat
      721 attcaggtcg aacatatacc ggtcaagaac caaaatactt aaatagtcct gaaacaccta
      781 tctttcaaaa aagaaagttg ttatacaact tagataaagc gcgtaaatca attagaaaat
      841 tagatgaaat cgtattacta gaaggtttta tggatgttat aaaatctgat actgctggct
      901 tgaaaaacgt tgttgcaaca atgggtacac agttgtcaga tgaacatatt acttttatac
      961 gaaagttaac atcaaatata acattaatgt ttgatgggga ttttgcgggt agtgaagcaa
     1021 cacttaaaac aggtcaaaat ttgttacagc aagggctaaa tgtatttgtt atacaattgc
     1081 catcaggcat ggatccggat gaatacattg gtaagtatgg caacgatgca tttactgctt
     1141 ttgtaaaaaa tgacaaaaag tcatttgcac attataaagt gagtatatta aaagatgaaa
     1201 ttgcacataa tgacctttca tatgaacgtt atttgaaaga actaagtcat gatatttcgc
     1261 ttatgaaatc atcgattttg caacaaaagg ctttaaatga tgttgcacca tttttcaatg
     1321 ttagtcctga gcaattagct aacgaaatac aattcaatca agcaccagcc aattattatc
     1381 cagaagatga gtatggcggt tacattgaac ctgagccaat tggtatggca caatttgaca
     1441 atttgagccg tcaagaaaaa gcggagcgag catttttaaa acatttaatg agagataaag
     1501 atacattttt aaattattat gaaagtgttg ataaggataa cttcacaaat cagcatttta
     1561 aatatgtatt cgaagtctta catgattttt atgcggaaaa tgatcaatat aatatcagtg
     1621 atgctgtgca gtatgttaat tcaaatgagt tgagagaaac actaattagc ttagaacaat
     1681 ataatttgaa tgacgaacca tatgaaaatg aaattgatga ttatgtcaat gttattaatg
     1741 aaaaaggaca agaaacaatt gagtcattga atcataaatt aagggaagct acaaggattg
     1801 gcgatgtaga attacaaaaa tactatttac agcaaattgt tgctaagaat aaagaacgca
     1861 tgtagcatgt gattttaaag aataatacga ataatgatta tgtcaaaatg tataagggta
     1921 aatgatagtt accgcattta aacaacacta ttgaaaaata aatattggga ttagttccaa
     1981 tttgtaaaat aaaattaaaa atatggatga attaattaag aatttagttt aaaatagcaa
     2041 tattgaataa atttcgaatg ttcatattta aaatcgggag gccgtttcat gtctgataac
     2101 acagttaaaa ttaaaaaaca aacaattgat ccgacattaa cattagaaga tgttaagaag
     2161 caattaattg aaaaaggtaa aaaagagggt catttaagtc atgaagaaat tgctgaaaaa
     2221 cttcagaatt ttgatatcga ctctgatcaa atggatgatt tctttgatca attaaatgat
     2281 aatgatattt cactagttaa tgaaaaagat agttcagata ctgacgagaa actgaatcca
     2341 agtgatctta gtgcccctcc aggtgttaaa ataaatgacc cagttcgtat gtaccttaaa
     2401 gaaattgggc gtgttaactt attaagtgca caagaagaaa tcgaattagc caaacgtatt
     2461 gaacaaggtg atgaagtagc aaaatcaaga cttgcagaag cgaacttacg tttagttgta
     2521 agtattgcta aaagatacgt aggtcgtggt atgttattcc ttgatttaat ccaagaaggt
     2581 aatatgggtc ttattaaagc tgttgaaaaa tttgacttta acaaaggatt taagttttca
     2641 acatatgcaa catggtggat tagacaagca atcactcgtg caattgctga ccaagcacgt
     2701 acgattcgta tccctgtgca tatggtagaa acaattaata aattaattcg tgttcaacgt
     2761 caattattac aggacttagg tcgagatcca gcaccagaag aaattggtga agaaatggat
     2821 ttaccagcag aaaaagttcg tgaaatttta aaaattgcgc aagaacctgt ttcattagaa
     2881 acaccaattg gtgaagaaga tgatagtcat ttaggagact ttattgagga tcaggaagca
     2941 caaagtcctt cagatcatgc tgcttatgaa ttattaaaag agcaattaga agatgtgctt
     3001 gatacattaa ctgatagaga agaaaatgta ttacgattaa gatttggtct tgatgacggc
     3061 agaacaagaa cacttgaaga agttggtaaa gttttcggtg ttacacgtga acgtattcga
     3121 caaattgaag caaaagcact tagaaaatta agacatccaa gtcgtagtaa acgtttgaaa
     3181 gactttatgg attaatttat atcaatttta atgattgata ccaagacatg aataagcgct
     3241 tatttatttt tagattaaga tttaacttga gtgaggttgg tacattgaat aatgttcaac
     3301 ctcttttttc ataaaggaga ataaaatgat ttcgttaaat aaccgattaa cgacggtaag
     3361 tcgattttta aaacaaggta caatcgcgga tattggctca gatcatgctt atttgccaat
     3421 ctatgcaatt caaaaccatt tatgcgaatg cggtattgct ggagaagtta ttcaaggccc
     3481 ttttcaagct gctgtgaaaa atgtagctgc aaaccaatta gtagatagaa ttgatgtacg
     3541 tttaggggat ggcttaagtg ttattcaacc tgaggacgta atcgataata tcacaatttg
     3601 tggtatgggc ggaccactta ttgctaaaat t
//
LOCUS       DAMQWL010000177         3626 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.183, whole genome shotgun sequence.
ACCESSION   DAMQWL010000177 DAMQWL010000000
VERSION     DAMQWL010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.183"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            277..591
                     /locus_tag="PF788_002585"
     CDS             277..591
                     /locus_tag="PF788_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HDG6304821.1"
                     /translation="MTYKELATFLKVLSDSSRLEILDLLSCGELCACDLLAHFQFSQP
                     TLSYHMKALVKTNLVTTRKIGNKHLYQLNHNIFESVINNLSKVHTSNQRCICHNLKTG
                     EC"
     gene            591..1883
                     /gene="arsB"
                     /locus_tag="PF788_002586"
     CDS             591..1883
                     /gene="arsB"
                     /locus_tag="PF788_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite efflux transporter membrane subunit
                     ArsB"
                     /protein_id="HDG6304822.1"
                     /translation="MMTTLATLIFLVTLLFVLWQPKGLDIGITALTGAFIAVITGVVS
                     FSDVFEVTGIVWNATLTFVSVILISLILDKVGLFEWSAIHMLHASKGNGLKMFVYIIL
                     LGAIVAAFFANDGAALILTPIVLAMVKNIGFSKRAIFPFIIASGFIADTTSLPLIVSN
                     LVNIISADYFHVGFVRYFSRMIIPNLFSLLASIIVLWLYFRKAIPKTFDDNNIKHPKD
                     AINDLKLFKISWIVLVILLFGYLISEFTKIPVSIFTGIIAFIFLMLARKSNAVNIKQV
                     IKGAPWNIVLFSIGMYIVVFGLRNAGITLILAKILEYISNYGLFSTILGMGFISAFLS
                     SIMNNMPTVLIDAIAIGQSNVHGMLKEGLIYANVIGSDLGPKITPIGSLATLLWLHVL
                     TQKDVKISWGTYFKTGIIITIPVLFITLIGLYLTLIIF"
     gene            1901..2296
                     /gene="arsC"
                     /locus_tag="PF788_002587"
     CDS             1901..2296
                     /gene="arsC"
                     /locus_tag="PF788_002587"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (thioredoxin)"
                     /protein_id="HDG6304823.1"
                     /translation="MTKKTIYFICTGNSCRSQMAEGWAKQILADDWNVYSAGIETHGV
                     NPKAIEAMKEVGIDISNHTSDLIDNNIIKNSNLVVTLCSDADVNCPSLPTNVKKEHWG
                     FDDPAGKPWSEFQRVRDEIKIAIENFKSR"
     gene            complement(2591..3445)
                     /locus_tag="PF788_002588"
     CDS             complement(2591..3445)
                     /locus_tag="PF788_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosaminidase"
                     /protein_id="HDG6304824.1"
                     /translation="MNKHKKGSIFGIIGLVVIFAVVSFLFFSMISDQIFFKHVKSDIK
                     IEKLNVTLNDAAKKQINNYTSQQVSNKKNDAWRDASATEIKSAMDSGTFIDNEKQKYQ
                     FLDLSKYQGIDKNRIKRMLVDRPTLLKHTDDFLKAAKDKHVNEVYLISHALLETGAVK
                     SELANGVEIDGKKYYNFYGVGALDKDPIKTGAEYAKKHGWDTPEKAISGGADFIHKHF
                     LSSTDQNTLYSMRWNPKNPGEHQYATDIKWAESNATIIADFYKNMKTEGKYFKYFVYK
                     DDSKHLNK"
BASE COUNT         1174 a          579 c          552 g         1321 t
ORIGIN      
        1 tttagtcgta aaaacaaagc ttcttaatca atacccttga ttacaaaata aattcaacta
       61 aggtgattgg ccatacactc aagatatggc taatcacctt tttcaatgca gaacaaagag
      121 tatattttgc aaaatcaata tctataattt atctttaata cccttttaat actaaaacca
      181 aatttaaatt acatagtcat atcgtgtaat ataccaaagg aacatagaca ttcatctata
      241 tagatgataa tctatttaac gtctaggagg tatgttatga cgtataaaga actagcaaca
      301 tttttaaaag ttttatcaga ttcaagcaga ttagaaatac tagatttact ttcttgtgga
      361 gagttatgcg cttgtgattt gttagcacat tttcaattct ctcaacctac acttagctat
      421 catatgaaag cattagtaaa aaccaactta gttacgacac gaaaaatcgg aaataaacat
      481 ttataccagc tcaatcataa tatttttgag tccgtaatta ataacttgtc taaggttcat
      541 acctctaacc aacgatgtat ttgtcataac cttaagactg gtgaatgcta atgatgacaa
      601 ctttagcgac actcattttt ctagtaactt tattatttgt attatggcaa cctaaaggcc
      661 tagatattgg cattaccgca ctaactggtg cctttattgc tgttattact ggtgttgtaa
      721 gtttttccga tgttttcgaa gtaacaggta ttgtttggaa tgctactttg acttttgtct
      781 cagtcattct tatttcatta atattagata aagttggatt attcgaatgg tcagctattc
      841 acatgcttca tgcttcaaaa ggcaatggtt taaaaatgtt cgtttatatc atattattgg
      901 gtgccattgt tgctgcattt ttcgcaaatg atggcgcagc gttaatctta acgcctattg
      961 tattagcgat ggttaaaaat ataggtttta gtaagcgggc catattccct tttattattg
     1021 cgagtggttt tatagctgac acaacttctt tacctttaat cgtgagcaat ctagtgaata
     1081 ttatatctgc tgattatttt catgtaggat tcgttcgata ttttagtaga atgattatac
     1141 ctaatttatt ctcgctttta gcaagtatta tagtattgtg gttatatttt agaaaagcga
     1201 tacctaaaac gtttgatgat aataatataa agcatcctaa agatgccatt aatgatttaa
     1261 agctatttaa aatttcatgg attgttctag ttatattact tttcggctat ctaatcagtg
     1321 aatttactaa aattccggta tcaattttca ctggaatcat tgcttttatt tttctaatgt
     1381 tggctcgtaa atcaaatgct gtaaatatta agcaagtcat taagggcgca ccttggaata
     1441 tagtattatt ttcaattggt atgtatatcg tcgtattcgg cttaagaaat gctggcatta
     1501 ctttaatatt ggctaaaata ttagaatata tttccaatta cggtctattt agcactattt
     1561 tgggaatggg cttcatttca gcgtttttat catcaataat gaataatatg cctacagttt
     1621 taatagatgc gattgctatt ggtcaatcaa atgtccatgg catgttaaaa gaaggcctaa
     1681 tttatgcgaa tgttatcggt tctgatttag gtccaaaaat tacaccgata ggctctttag
     1741 ctacattact gtggttacac gtcttaacac aaaaagatgt taagatttct tggggcacat
     1801 actttaaaac tggtatcatc attacaattc cagtactatt tataaccctc atagggttgt
     1861 atctaacact tatcatattt taattaatta ggagattgtt atgactaaaa aaacaattta
     1921 ttttatatgt acaggcaact catgtcgaag tcaaatggct gaaggttggg ctaaacaaat
     1981 cttagcggat gattggaatg tatattctgc tggtatcgaa acacacggtg ttaatcccaa
     2041 agcgatagaa gctatgaaag aagtaggcat tgatatatca aatcatacat cagatttaat
     2101 cgataataat attattaaaa attcaaattt agttgttaca ttatgtagtg atgcagacgt
     2161 aaattgccct tctttaccaa caaatgttaa gaaagaacat tggggatttg atgatcctgc
     2221 aggcaagcct tggtcagagt tccaacgtgt aagagatgaa attaaaatcg caattgaaaa
     2281 tttcaaatca cgatgagagt gggacagaaa tgataaaaaa acactaatga tttattatgt
     2341 agtggttctt tatcattagc tataactaat gtgtacttaa aaataggaat acatgagtaa
     2401 aactcatgca taagaaatac taatttctaa agaaaaagta attctttatc gatgtcctgc
     2461 cccacttgca ttggtgggat tatcaatcaa tgtgttttct ctaatgcaaa aagacgcttt
     2521 ctatcaaaac aagatagaaa gcgtcttttt agtatgtccg agtcataaaa acaactcgta
     2581 gcttatcaaa ttacttattc aaatgtttac tgtcatcttt atacacaaag tatttgaagt
     2641 attttccttc agtcttcatg ttcttataaa agtcagcgat aattgttgca ttactttctg
     2701 cccacttaat atctgtagca tattgatgtt ctcctggatt ttttggattc catctcatac
     2761 tatacaatgt attttgatct gtgcttgata agaagtgctt atgaatgaaa tcagcaccgc
     2821 ctgaaatagc tttttcaggt gtatcccaac catgcttttt agcatattct gcacctgttt
     2881 taattgggtc tttatcaagg gctcctactc catagaaatt gtagtacttt ttgccatcaa
     2941 tttcgactcc attagctaat tcacttttaa ctgcgccagt ttctaataat gcatgtgaaa
     3001 ttaaataaac ttcgttaacg tgcttatctt tagcagcttt taagaaatca tccgtatgtt
     3061 tcaataacgt tggtctatct actaacatac gtttaattct atttttatca atcccttgat
     3121 actttgataa atctaaaaat tgatattttt gcttttcatt atcgataaaa gtaccgctat
     3181 ccattgcact tttaatttca gttgcagatg catctctcca tgcatcattc tttttatttg
     3241 atacctgttg actcgtataa ttatttattt gtttctttgc tgcatcgttt aatgtaacat
     3301 ttaacttttc aatcttaatg tcggatttaa catgtttgaa aaatatctga tcggatatca
     3361 ttgagaaaaa taaaaatgag acaacagcaa atatgacaac aagtcctatt attccaaaaa
     3421 tagaaccttt cttgtgttta ttcatatcca cacctcttag gtcattgttg ttatacattc
     3481 agtttgacta cgataataaa gtttaacatt attaaaaccg tttaacaatt ttatctatgc
     3541 attgttacat attcataaat aaacagtaat gtaaatgaaa cgttttaaac catttatcaa
     3601 cattacttta cgttgatcta cgaatc
//
LOCUS       DAMQWL010000178         3592 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.184, whole genome shotgun sequence.
ACCESSION   DAMQWL010000178 DAMQWL010000000
VERSION     DAMQWL010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.184"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(406..732)
                     /locus_tag="PF788_002589"
     CDS             complement(406..732)
                     /locus_tag="PF788_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HDG6304825.1"
                     /translation="MILDNVNPNDLFPTEKKGPSVLGIIEYQVQGENEFEGAFIATNE
                     RLIMNVDMNGQFYYRSISYNEIEKIDYDGQTIMFKFNIGNVPMHDIKSANVEMFVEYV
                     KQHMIV"
     gene            complement(796..1539)
                     /locus_tag="PF788_002590"
     CDS             complement(796..1539)
                     /locus_tag="PF788_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SarA family transcriptional regulator"
                     /protein_id="HDG6304826.1"
                     /translation="MSKFKVKRLTAHILMLKVINDMLKYSFHLTLTQVKLLNLLVKYD
                     NSDSNSASIDSLLKMKEIQSKMALLQMLSYLNNHQWLLKGRDQRDQRKLTISINKMHI
                     DKIEYMNNELSDYIERYFGQYTFDFSCDYVSYLLSSQELLRNLKCYLNMCQLSLEELY
                     VLGILNLHKGQLTVKELQGEFHHPIFAVSPILKCLILKGLVKKERCELDERRVIVTIK
                     REKFSKVTMLIQACYNYLEKGIQVNLNNK"
     gene            complement(1565..3520)
                     /locus_tag="PF788_002591"
     CDS             complement(1565..3520)
                     /locus_tag="PF788_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304827.1"
                     /translation="MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDL
                     KRNYVTIIMLNDLYQIDGNDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFR
                     ILIKYLIYSKIKQQSYNANDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKK
                     INRKDVINQVSITNKALSDMFKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASS
                     HGFNHYSRFIHLFKETYGNTPKLIRKRYSPTSHSINHSQLVEIDKNIIELFDDTNQSS
                     SSMREIDIPFEPTKRSQMYQPKNIYIKGSNFYWMDYYTIKQIIQRLGVNPENLHIIVT
                     IDTSNELSIEQITLLLQKIVNYNVNVVFRIKHEYKELLTSAERGKIEKLVATIFNMTF
                     ESNRCKIAFLINDLNTTAIQKLKRLIDNYIGVFELIYHLEPKELNTRYDKEIDHLIDY
                     FILPLRQIEQVSIARSKIICDVDLINENNDLKEKITMSDINKVSELLTNYTKFRGLIM
                     HMSIISESSKEINLTRLSIFIFIINILNQLRGIVIYQNDTMIVTKFKHEVQCVICLPA
                     ALLNENSDAIRLSCKGLQQFSHAKTKQIVLSIDKDNHTSENGVLVNDIMQQHSYWKAN
                     FIERNIYDHSLMVSSNSIVHLKYHLEI"
BASE COUNT         1223 a          581 c          400 g         1388 t
ORIGIN      
        1 acatcttgtt gtagcaaggt tcacatgtaa tttattaaat cgaaactcta tccaactatg
       61 ttataaagtt cattctaaac aaataagtat aaaaattcaa tatttttatt actagaatat
      121 ggttaaatac atttatttct tataataatt tgatgtttaa gatattttgc caaattgaaa
      181 attattagtc tgaatatttt gtatcttaac tgatatgtaa acttttaaaa ttttaatcta
      241 tatcaacgtg tttgatttga tattttttat attaattgga tggcttgctc acaaaattta
      301 taaaatataa aaaaagaaga gctttaaatc ataacgcatg ccatttatct ttaaatgcaa
      361 tgagttatca ttcaaactct tcttatcaac ctacatacat tgacattata ctatcatatg
      421 ttgttttaca tattcaacaa acatttcaac gttagcactt ttaatatcat gcattgggac
      481 attaccaata ttaaatttga acattatagt ttgaccatca taatctatct tctctatttc
      541 attataacta atacttctat aataaaattg gccattcata tctacattca taattaatct
      601 ttcatttgtt gctataaatg ccccttcaaa ttcattctca ccttgaactt gatactcaat
      661 tattcctagc actgacggac cctttttttc agttggaaat aaatcatttg gattcacatt
      721 atctaaaatc ataatatccc tcccacttaa aactataaac tattcttcat aggtatatga
      781 aatacaagtg attaactatt tattattaag attaacttgt attccctttt caagataatt
      841 ataacatgct tgaataagca tagtgacttt agaaaacttt tctcgcttga ttgttacaat
      901 aacacgcctt tcatctaatt cacatctctc ttttttaact aatcccttca aaattaaaca
      961 ctttaaaatc gggctaaccg caaatatcgg gtgatggaat tcaccctgta attctttaac
     1021 cgtcaattga cctttatgca gatttaatat tcctaaaacg tataactctt ctaatgataa
     1081 ttgacacata tttaaataac actttagatt ccgcaataat tcttgtgacg acaataaata
     1141 cgatacatag tcacaactaa aatcaaatgt atattgacca aaataacgtt caatatagtc
     1201 actaagctca ttattcatat attctatttt atctatatgc attttattaa tcgaaatagt
     1261 caatttacgt tgatcccttt gatctcttcc tttcaatagc cattgatgat tgtttaaata
     1321 acttaacatt tgaagaaggg ccatcttaga ttggatttct ttcattttta ataaactatc
     1381 tattgaagcg ctattggaat cagaattatc atatttaact aatagattta atagtttcac
     1441 ttgagtcaaa gtgagatgaa atgaatattt caacatatca ttaatgactt tcaacattag
     1501 tatgtgtgca gttaaacgct taactttaaa tttagacatc tttaaaacct ctcttaaacc
     1561 atgcctatat ctcaagatga tatttcaaat gaacaatact attgcttgag accattaatg
     1621 aatgatcata aatatttctt tctataaaat tagctttcca ataactgtgt tgttgcataa
     1681 tatcattcac aagtacacca ttttcggaag tatgattatc tttatctata cttaaaacaa
     1741 tttgtttagt tttagcatgg ctaaattgtt gaagaccctt acacgataaa cgtatagcgt
     1801 ctgaattctc atttaacaat gcggctggca aacaaatgac acattgtact tcatgtttga
     1861 acttcgttac aatcatcgtg tcattttgat aaataacaat ccctcgtaat tgattaagta
     1921 tatttatgat aaaaatgaat attgataatc tagttaaatt tatttctttg ctcgattcac
     1981 ttataattga catgtgcata ataagtcctc gaaattttgt ataatttgtc aaaagttcag
     2041 aaaccttatt aatatcagac attgtgattt tttcttttaa gtcattattc tcattaatca
     2101 aatctacatc acatataatt ttagaacgtg caatagacac ctgttctatt tgtcttagcg
     2161 gtaagataaa atagtctatt agatgatcaa tttctttatc atagcgcgta ttcaactctt
     2221 ttggttccag atgatatatt aattcaaata ctcctatata attatctatt aaacgtttca
     2281 gtttttgaat tgcagtagta tttaagtcgt taattaaaaa tgcaatctta catctattac
     2341 tctcaaaagt catattaaaa attgtagcta ctagcttttc tatcttgcct ctttcagcac
     2401 tcgttaacaa ttccttatat tcatgtttaa tacgaaacac tacatttaca ttgtaattca
     2461 ctatcttttg aagtaataaa gtgatttgtt caatcgatag ctcattgctt gtgtcgattg
     2521 taacaattat atgcaagttt tcaggattaa cacctaatct ttgaatgatt tgtttaatag
     2581 tataataatc catccaataa aaattacttc ctttaatata aatgttttta ggttgataca
     2641 tttgactcct ttttgtaggc tcaaaaggta tatcaatctc gcgcatactt gaagaacttt
     2701 gattagtatc atcaaataat tcaattatat ttttatcaat ttcaactaat tgggaatggt
     2761 taattgaatg agatgttgga ctatatcttt ttctaattaa tttaggagtg ttaccatacg
     2821 tttctttaaa gaggtgtata aaacgagaat aatgattaaa accatgacta cttgcgattt
     2881 cttcaatagg cttcttagaa gttaaaatat caattaagca atgctccagt ctaatatgat
     2941 ttaaatattg aataaaatta ctataaggtg tcgctttaaa catgtcactt aaagctttgt
     3001 ttgtaatact aacttgatta atgacatctt tcctatttat ctttttatgg tggttgtttg
     3061 ttaaataatc gtgcacttct tcggctacta aatgacgact accatcgtat gtatttaatg
     3121 acattaattc aacacacatg taattaataa tcttatcatt agcattataa gactgttgtt
     3181 taattttgct gtagattaaa tacttaatca agattctaaa agtgctagca acctcatttg
     3241 ttaatatctt gccacgcatc atatagtttg cattcataaa cttcaaaaat gtctttgcac
     3301 ttacttcaac aacacaacat acactatcat cattaccatc aatttgatac aaatcattca
     3361 acataataat ggtgacataa tttcttttta gatcatattg ttgtagattg attgaaacta
     3421 cacctgtacc ttgtaaccaa tatataattt ttaagttcgc ttccttcaca ctactcattt
     3481 tcatactttt ataaatatgt agtgaataat tatctgtcat cttacatcct cacatataca
     3541 aatatattga tttactcctg tttgtctttc tcaaatcaat tgtcaacatc ta
//
LOCUS       DAMQWL010000179         3572 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.185, whole genome shotgun sequence.
ACCESSION   DAMQWL010000179 DAMQWL010000000
VERSION     DAMQWL010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.185"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            619..1566
                     /locus_tag="PF788_002592"
     CDS             619..1566
                     /locus_tag="PF788_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDG6304828.1"
                     /translation="MRKRARIIYNPTSGKELFKRELPDALIKLEKAGYETSAYATEKI
                     GDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRAL
                     HIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPF
                     AYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGY
                     FTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGG
                     KLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE"
     gene            1647..3008
                     /gene="rlmD"
                     /locus_tag="PF788_002593"
     CDS             1647..3008
                     /gene="rlmD"
                     /locus_tag="PF788_002593"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDG6304829.1"
                     /translation="MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIE
                     YKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVI
                     NLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDME
                     SCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMIIFVTN
                     GKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDST
                     FKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPLAKHVYG
                     VEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDE
                     TFIQTLLTLEPKRIVYISCNPATQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALF
                     NLK"
     gene            3178..>3572
                     /locus_tag="PF788_002594"
     CDS             3178..>3572
                     /locus_tag="PF788_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HDG6304830.1"
                     /translation="MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQ
                     NIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKW
                     QFSIIMLSPLILLSTGLLILIKVFGYSSL"
BASE COUNT         1307 a          498 c          670 g         1097 t
ORIGIN      
        1 gcgttagctt taattatatt aaggcaaact gtataataaa aaggtataaa acatttttgt
       61 ataaagacaa cattatattt acaacatcat tttaaaggta aaatagcata actgacgaag
      121 tctatataat gaagaacggc aaaaaatgct gaataaataa caagctttgt acatattgag
      181 atagtatttg tttaagatac aagttggtct ttaacgatat taagaatgat gaaataagac
      241 tgagcctggg tcataaattc aatgtcctag gcactacaat gttatattgg ctgtagttga
      301 ctgaaagaaa atacgcttgt aacaagcttt tttcaattct agtggggccc caacatagaa
      361 gctgactttc tgtcagctta caataatgtg caagttggcg gggcccccaa acaaagaagc
      421 tgactttctg tcagcttaca ataatgtgca agttggggtg gggccccaac atagagaatt
      481 tcgaaaggaa attctacaga caatgcaagt tggggtagaa cgaaataaat tttgttaaat
      541 attatttctg tcccactccc tattagacga aacaaagatg aagttaaaat atatgaattt
      601 taagtagagg gataagatat gaggaaacgt gctagaatca tttataaccc gacatcaggt
      661 aaagagctat ttaaaagaga attacctgat gccttaataa aattagaaaa agcgggatat
      721 gaaacgagtg catatgcaac cgagaaaata ggtgatgcca cacttgaagc agaaagagct
      781 atgcatgaaa attatgatgt attaatcgct gcaggtggtg atggaacatt aaatgaagta
      841 gttaatggta tcgcagaaaa gcctaatcgt cctaagctag gtgtcattcc tatgggtact
      901 gttaatgact ttggacgtgc attgcatata cctaatgaca tcatgggggc acttgatgtc
      961 atcattgaag gtcattctac taaagtagat attggtaaaa tgaataatcg atactttatt
     1021 aatttagctg caggcggaca attgacgcaa gtctcttatg aaacaccgag taaattgaaa
     1081 tctattgttg gtccatttgc ttattacatc aaaggtttcg aaatgttacc tcaaatgaaa
     1141 gctgtagatt taagaattga atatgatggt aatgttttcc aaggagaagc attattattc
     1201 tttttaggtt taacaaattc aatggcagga tttgaaaaat tagtgccgga cgctaagtta
     1261 gatgacggct attttacgtt aattatagtt gaaaaatcaa accttgcaga acttggtcat
     1321 attatgactt tagcttcaag aggagaacat actaagcatc ctaaagttat ttatgaaaaa
     1381 gcaaaggcaa ttaatatttc atcattcaca gacttacaac taaatgtaga tggagaatat
     1441 ggtggtaaat taccagcgaa tttcttaaat ctagaacgtc atatagatgt ctttgcacct
     1501 aatgatattg taaatgaaga gttaataaat aatgatcatg ttgatgacaa tttaatcgaa
     1561 gaataaacag aaatagtgaa atatataatg gcaggttagg aagcgcataa ttttgttcct
     1621 aacctgttca ttttggaggt aaaattttgc aagcaatagc taaaaatgac ataaaaacgg
     1681 gaacagttgt tgatttaacg catgaaggcc atggtgtcgt aaaaatagat cgctttccta
     1741 ttttcatacc acaagcttta attaatgaac aaattgaata taaaattatc aaagtaaaaa
     1801 agaactttgc gataggtaag ttgcttaata taaatacgag aagtgagaat cgtgttgcac
     1861 cgccatgtat atattatgaa cgttgtggtg ggtgccaact tcaacactta tcatacgaag
     1921 cacaacttga aatgaaaaag gaacaagtga ttaatttgtt tcagcgaaaa gcgcattttg
     1981 ataattctaa gattaacgat acagttggca tgacagatcc ttggagatat cgaaacaagt
     2041 cccagattcc agttggtaag aatgaacaga atgaagttat tatgggcttt tatcgtcaaa
     2101 gaagccatga cattattgac atggaaagtt gtttaataca agattcacaa catcaagaag
     2161 tgatgaatga agttaaatct attttaaaag atttaaatgt aagtatttat caagaacaat
     2221 tgaaaaaagg tttaatgaga catttggttg taagaacagg atatcataca gacgaaatga
     2281 tgattatttt tgtaactaat ggtaaaaagt ggccacaaaa aaatgctgtt gttgagaaga
     2341 tattagatgc atttcctaat gtgacaagca ttaaacaaaa cattaatgat agccactcta
     2401 atgttattat gggacgtcaa tctataacgc tatatggtaa agatacaatt attgatcaat
     2461 taacagatag tacatttaaa ataagtgatc agtcattcta ccaaattaat tctgaacaaa
     2521 cagagaaatt atataataaa gcaattgagt atgcgcaatt gacaggtaat gaagttgtat
     2581 tagataccta ttgtggtatt ggaacaatag ggctatatat ggcaccactt gcaaaacatg
     2641 tatacggtgt tgaagtagta ccttctgcaa ttgaagacgc acaacaaaat gcgactataa
     2701 accaatgcaa taatacaact tttgtctgtg ggaaagctga agaagttatt ttacaatgga
     2761 aagcacaagg gattaaacca gatgttgtaa tggttgatcc gccaagaaag ggctgtgacg
     2821 aaacgtttat tcagactttg cttacattag aacctaagcg tattgtctat atttcatgta
     2881 atcccgcaac acagcaacgt gatgcattat tattagctga aaaatatcaa cttgaagagg
     2941 taacaccggt agatatgttt ccacaaacaa cacatgttga gacagtggca ttattcaatt
     3001 tgaaatagcg cacatgattt gagataaaat ttcgccttaa taagtgaaga aagaagtcgt
     3061 atattaaaat tttattacag ccaatttact ttcttgatat gaacttttta aattaaatgt
     3121 gacattgtat actatattta aagaagaata agaatgtcat gatcgggagg gttggtaatg
     3181 cataaaattg atttaacgac aaataatttt caaatgcgaa ggtttattat cttgcaactt
     3241 gttattgcgt tattcgtgat tttatttacg tataagtggg cgttaggtgt cacagcggtt
     3301 gtcgatcaaa atatcatcat caatcttgta tatgggtttg ctggattcat tattttattg
     3361 attttacatg aacttatcca tagagcatta tttcttttat ttaaaaaaga tagcaaacct
     3421 atgtttaata taaaaaaaga cagaatctta ttccaaacag cagatgcttg cttcaacaaa
     3481 tggcaattct caattattat gctgtcacca ctaatcctat taagtactgg cttgcttatt
     3541 ttaattaagg tatttggtta ttcatcactt at
//
LOCUS       DAMQWL010000180         3499 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.186, whole genome shotgun sequence.
ACCESSION   DAMQWL010000180 DAMQWL010000000
VERSION     DAMQWL010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.186"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            38..307
                     /gene="rpsN"
                     /locus_tag="PF788_002595"
     CDS             38..307
                     /gene="rpsN"
                     /locus_tag="PF788_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009384394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDG6304831.1"
                     /translation="MAKKSKIAKERKREELVNKYYELRKELKAKGDYEALRKLPRDSS
                     PTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW"
     gene            464..1441
                     /gene="guaC"
                     /locus_tag="PF788_002596"
     CDS             464..1441
                     /gene="guaC"
                     /locus_tag="PF788_002596"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HDG6304832.1"
                     /translation="MKIFDYEDIQLIPNKCIVESRSECDTTIQFGPKKFKLPVVPANM
                     QTVMNEKLAKWFAENDYFYIMHRFDEEARIPFIKHMQNSGLFASISVGVKKAEFDFIE
                     KLAQEKLIPEYITIDIAHGHSDSVINMIKHIKTHIPDSFVIAGNVGTPEGVRELENAG
                     ADATKVGIGPGRVCITKIKTGFGTGGWQLAALNICSKAARKPLIADGGIRTHGDIAKS
                     IRFGASMVMIGSLFAAHEESPGETVELDGKQYKEYFGSASEFQKGEHKNVEGKKMFVE
                     HKGSLMDTLKEMQQDLQSSISYAGGKDLKSLRTVDYVIVRNSIFNGDRD"
     gene            1463..2479
                     /locus_tag="PF788_002597"
     CDS             1463..2479
                     /locus_tag="PF788_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001789887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HDG6304833.1"
                     /translation="MKKFIVTVVAFLSIIIIAPITEFKPFIHLQNEVRQYIDIHINKE
                     TISAENKLDTPKKQQFAFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYN
                     NFIMISYMKDKVNALYTNQNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQN
                     NKEYDVFHKNHIYTTVFYDKHRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQ
                     NFDLVNAERKQHQLSTLKYSKQNSETARKHSKDMANNHYFDHTNLKGQSPFDRLKKDG
                     ITFNSAGENLAYGQVSSIYAHQGLMNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTE
                     NYTG"
     gene            complement(2859..3482)
                     /gene="lexA"
                     /locus_tag="PF788_002598"
     CDS             complement(2859..3482)
                     /gene="lexA"
                     /locus_tag="PF788_002598"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HDG6304834.1"
                     /translation="MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVH
                     GHLSRLEEKGYIRRDPTKPRAIEIVSDQTNDNINMEETIHVPVIGKVTAGVPITAVEN
                     IEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
                     EEDEATVKRFYKEKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM"
BASE COUNT         1302 a          482 c          610 g         1105 t
ORIGIN      
        1 aataattacg atttgataaa aagtgaggta actatatatg gctaagaaat ctaaaatagc
       61 aaaagagaga aaaagagaag agttagtaaa taaatattac gaattacgta aagagttaaa
      121 agcaaaaggt gattacgaag cgttaagaaa attaccaaga gattcatcac ctacacgttt
      181 aactagaaga tgtaaagtaa ctggaagacc tagaggtgta ttacgtaaat ttgaaatgtc
      241 tcgtattgcg tttagagaac atgcgcacaa aggacaaatt ccaggtgtta aaaaatcaag
      301 ttggtaaaat caaatttcgt actttagccc atttacaata tcaataaaac aatgtacagt
      361 atatacgaat gctataaact gaatgttttc tcatattaat aaggaaacat tcggttttta
      421 atttgcattt aaaaataatt agtttttaaa ggggctattt aaagtgaaaa tatttgatta
      481 cgaagatatt caattaatac ctaataaatg catagttgaa agtaggtctg aatgtgatac
      541 aactatccaa tttggtccga aaaaattcaa gctacctgta gttcctgcaa atatgcaaac
      601 agttatgaat gagaaattag cgaaatggtt tgctgaaaat gattactttt atatcatgca
      661 tcgttttgat gaagaagcaa gaataccttt tataaaacat atgcaaaatt caggcttatt
      721 tgcatctatt tcagttggtg taaagaaagc ggaatttgat tttattgaaa agttagctca
      781 agaaaaatta atccccgaat atattacaat agatattgcg catggtcact cagattcagt
      841 gataaacatg attaaacata taaaaaccca tatacctgat agttttgtta ttgctggtaa
      901 tgttggtacg ccagaaggtg ttagagaatt agaaaatgct ggtgctgatg ctaccaaagt
      961 cggtataggt cctggtagag tttgtattac aaagattaaa acaggttttg gtactggtgg
     1021 ttggcagtta gcggcattaa acatatgtag taaagcagct cgtaaacctt tgattgccga
     1081 tggtggtata agaacgcatg gcgacattgc taaatcaatt agatttggtg catcaatggt
     1141 catgattggt tcattatttg cggcacacga agaatcacct ggtgaaactg tagaacttga
     1201 tggtaaacag tataaagaat attttggtag tgcatctgaa tttcaaaaag gcgaacataa
     1261 aaatgtagaa ggtaaaaaaa tgtttgtaga acataagggt tcattaatgg ataccttaaa
     1321 agaaatgcaa caagatttac aaagctcaat ttcatatgcc ggtggaaaag acttgaaatc
     1381 attacgtact gtagattatg ttattgttag aaactctatt ttcaacggtg atagagatta
     1441 atatttatag taggtgatgt aaattaaaaa attcatagta actgttgttg cgtttttatc
     1501 aattattatc attgcgccaa taacagaatt taaaccattc attcatttac aaaatgaagt
     1561 aagacaatat attgacattc acatcaataa agaaacaatt tctgcggaaa ataaattgga
     1621 tacaccgaag aaacaacaat ttgcctttaa taatatacaa atgaacatgt cgaaatcaga
     1681 tgttgagaaa acattaaata aaccaaaaag agtgacattt aatgaatatg gtacgaagtg
     1741 gtatacgtat tatgatgacg attacaataa ttttataatg ataagttaca tgaaagataa
     1801 agttaatgcg ttatatacaa atcaaaatat aatcacttca aaatcaaaaa ttaaatataa
     1861 tacacctaaa tcggttgtaa ggcaaagatt aggcgaacca gaaacagaga ttgttaaagg
     1921 tagagtgcgt tacgaacaaa ataataaaga atatgatgtt ttccataaaa atcacattta
     1981 tacgacggta ttttatgata agcatcgacg taataatgta acagctgttt tacaagtaag
     2041 tgatgctatg gaaaatagat taaaagaaca atatggagca ccatcgaaat cgcttgcaga
     2101 tagttttgaa ctacaaaatt ttgatttagt taatgctgaa agaaaacaac atcaattatc
     2161 tacattgaag tattctaaac agaattctga aactgcacgt aagcatagta aagatatggc
     2221 caacaatcat tattttgatc atacaaattt aaaaggtcaa tcaccatttg atcgattgaa
     2281 aaaagatggt attacattta actcagccgg agagaattta gcatatggtc aagttagtag
     2341 tatctatgca catcaaggat taatgaattc tattggtcac agaaaaaata ttttaaatga
     2401 tacgtttaaa atattaggtg ttggtgttga ttttaatgat gaaaaacaac ctttttggac
     2461 agaaaattat actggttaat gtttttggca tgagattaaa gggtaatgtt tgtctgtaag
     2521 gaagtagata aacatgatga caacagataa accaaaagat gcggatatac ttgaacgcgt
     2581 caaagatata cttaataaaa aagaaagaaa aaaataataa tggctcgctc ctgtaaatta
     2641 ttacgggggc gagttttaat ttgtgtaaca ttttgcagaa atctgtaatt caaaatttat
     2701 attaaagaat gagattatct aacaattcgc aatttctgtt tgaactgaat ttagattaga
     2761 ataaataaaa cctcttgaaa acgtaacttt ttcaagaggt ccaaaattta taaaaatgag
     2821 ggcttaacaa ttacgataat atataacggt ttaaaatatt acatttcgcg gtacaaacca
     2881 attactttcc caattacagc aacattgtct aggtaaattg gctccattgt actattttca
     2941 ggttgtaatc gataacgatt tttttcttta tagaagcgtt tgacagttgc ttcatcttcc
     3001 tcagtcatag caacaataat gtctccattt tctgctatgg tttgactgcg aacaattact
     3061 ttgtctccgt ctaatatacc agcctcaatc atactgtcgc ctacgacgtt taatatgaat
     3121 atgtcgctat tgtgtgtcga tgttaagtgt tcaggtaatg gaaaatattc ttcaatattt
     3181 tctactgcgg taataggaac acctgctgtg actttaccaa taactggcac atgaatcgtt
     3241 tcttccatat taatattatc atttgtttga tcacttacaa tttctatagc acgtggtttc
     3301 gttggatctc ttcttatata gcctttttct tcaagacgtg aaaggtgacc atgaacagtt
     3361 gaactggatg ctaagccaac tgcttcacca atttcgcgaa cactaggcgg ataacctttc
     3421 gtttgaacaa cttgtttaat atagttatat atttcgcttt gtcgttttgt taattctctc
     3481 atatataggc actccctaa
//
LOCUS       DAMQWL010000181         3437 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.187, whole genome shotgun sequence.
ACCESSION   DAMQWL010000181 DAMQWL010000000
VERSION     DAMQWL010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3437
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.187"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            459..845
                     /locus_tag="PF788_002599"
     CDS             459..845
                     /locus_tag="PF788_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HDG6304835.1"
                     /translation="MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDM
                     IESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLS
                     KHGFTCKKETPLLPNINNERLVLVNE"
     gene            838..1134
                     /locus_tag="PF788_002600"
     CDS             838..1134
                     /locus_tag="PF788_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDG6304836.1"
                     /translation="MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEI
                     LQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK"
     regulatory      1192..1295
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            1384..2409
                     /locus_tag="PF788_002601"
     CDS             1384..2409
                     /locus_tag="PF788_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HDG6304837.1"
                     /translation="MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGK
                     STLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKN
                     IMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPT
                     VLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGK
                     VIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTT
                     EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVK
                     MEVLRHG"
     gene            2402..3097
                     /locus_tag="PF788_002602"
     CDS             2402..3097
                     /locus_tag="PF788_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304838.1"
                     /translation="MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFIL
                     GLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISG
                     PTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPAL
                     VSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQ
                     FIGDWLTNKLDKR"
     gene            3115..>3437
                     /locus_tag="PF788_002603"
     CDS             3115..>3437
                     /locus_tag="PF788_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6304839.1"
                     /translation="MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAE
                     ILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKI
                     VSAGDV"
BASE COUNT         1182 a          473 c          661 g         1121 t
ORIGIN      
        1 tcgtagagca tagaacattg atttatgtcc cagcctgttt tcataagcca cagctaatgt
       61 gtatttaaaa ataggaatac atgagtaaaa ctcatgcata agaaatacta atttctaaag
      121 aaaaagtatt tctttatgtt ggggccccgc caacttgcac attattgtaa gctgacttac
      181 catcagcttc tgtgttgggg ccccgctata attgaaaagt ttgttatagg tgtattttct
      241 tttggttaac tattgttaat ataacattgt agattttagg atgttgattt ttgacttagc
      301 ctttgtctgc ttatgttaaa tgttccagct agtcaaacat tgagtttgta attattatat
      361 taagctagtt taaatttttt gtgatttatg ttttattcat accaattttg tgaaatgata
      421 cagtgacaga tgtttattga ttttaaaggg tgatgatgat ggctattgta aataaagtga
      481 taattgttga aggaaaatct gataaaaaaa gggtgcaaca ggttattgca gaaccagtca
      541 atattatttg tactcatgga acaatgagta tagataagct tgatgatatg atagaatcac
      601 tgtatgataa acaagttttt gtattagccg attctgatga cgaaggagat cgaattagaa
      661 attggtttaa acgttatttg agtgaaagtg aacatatatt tattgataaa acttactgtc
      721 aagttgcgaa ttgccccaaa caatatttgg cgcatgtact ttcaaaacat ggctttactt
      781 gtaagaaaga aacacctctt ttaccgaata taaataatga aaggttagtt ttagtaaatg
      841 aataattcat tagacatcaa agatgtaact acattttatg aggaagacaa acatttaatc
      901 tttggttata caccaacgtg tggtacttgt aaggtttcag aaagaatgtt agacattgct
      961 aatgaaatat tgcagttacc attattgaaa atagatttaa acttttatcc tcagttttgt
     1021 aaagatatgc aaatcatgtc tacgccgatt ttattgttga tgaataaaga taaagaagta
     1081 aaacgaattt atgcatttaa atcggtgact gatttgttag aaaatttaaa atagttattg
     1141 acgaaatttt actaaggtgt taggattaat acaaattaaa tgatgcgtaa actcttatcg
     1201 agagtggtgg agggatgtgc cctacgaagc ccggcaaccg tcttatatag aaatggtgcc
     1261 aattcacata aagttttaac ttttgaagat gagagaaaca atactactat tgctttctca
     1321 atttttctat cgatattgag aaagcatttt ttattttatt aagcaacaca gggaggaatc
     1381 aacgtgattg aattaaaaga agttgttaaa gaatatcgga ctaaaaataa agaagtcctt
     1441 gctgtagatc acgttaattt atcgattcga gcaggatcga tttatggcgt cattggtttt
     1501 tctggagcag gaaaaagtac tttgattcga atgtttaatc atttagaagc gcctacatca
     1561 ggtgaagtta ttatagatgg agaccatata ggtcaattgt ccaaaaatgg attaagagca
     1621 aaaagacaaa aagtaagtat gatcttccaa cattttaatt tgttatggtc aaggactgtg
     1681 ttaaaaaata ttatgtttcc gcttgaaatt gcaggtgtcc ctagaaggag agctaagcaa
     1741 aaagcattag aacttgtcga actcgtcggt ttaaaaggta gagaaaaggc ttatccatca
     1801 gagttatcag gtggacaaaa gcaacgtgtt gggattgcac gagcgttagc taatgatcca
     1861 acggtcttgc tttgtgatga ggcaacaagt gcacttgatc cgcaaacaac agatgaaatt
     1921 ttagatctac tactaaaaat tagagaacaa caaaatttaa caattgtact aattacgcat
     1981 gaaatgcatg tcattcgtcg tatttgtgat gaagttgcag ttatggaaag tggtaaagtg
     2041 atagaacaag gaccggtgac acaggttttt gaaaatccgc aacacactgt gacaaaacga
     2101 tttgtgaaag acgatttaaa tgatgatttc gaaacatctt taacagaatt agagccatta
     2161 gaaaaagatg catatatcgt tagattagtt ttcgctggtt caacaacaac cgagcctatt
     2221 gtatcgagtc tatcaactgc ctatgatatt aaaattaata ttttagaagc aaatattaaa
     2281 aatacaaaaa atggaacagt cggcttttta gttctgcata ttccatatat ttcaagtgta
     2341 gatttcggaa aattcgaaaa agagttaatt gagcgacaag ttaaaatgga ggtgttaaga
     2401 catgggtaaa tcatttagtg aaattataaa tgaaatgatt acaatgccta atattcagtg
     2461 gccagaagtt tggactgcaa tagtcgaaac actatacatg acagtcgtct caactatatt
     2521 tgcatttata cttggtctta ttttaggtgt gttattattc ttgtctgcta aaggtaagtc
     2581 tatcggtgca aggttatttt attctatcgt ttctttcatt gttaacttat ttagagcgat
     2641 accatttatt attttaattt tattattaat tccatttaca agtttgatac ttggaacgat
     2701 aagtggtccg acaggtgcgt taccagcctt gatcattggc gcagcaccgt tttatgcaag
     2761 gctcgtagaa attgctttta aagaaattga taaaggtgtc atcgaagcgg cttggtcaat
     2821 gggcgctaat acttggacag taattcgtaa agtcctttta cctgaagcta tgccagcgct
     2881 agtgtctggc attacagtta cagcaatcgc tttagttggt tcaacagcag ttgcaggtgt
     2941 aattggtgcc ggtggtttag gaaatttagc atacttaaca ggtttcactc gaaatcaaaa
     3001 tgatgtcatt ttagtatcaa cagtttttat tttaattatt gtatttataa tccaattcat
     3061 tggggattgg cttacaaata aacttgataa acgataaatt gggggtttca ttttatgaaa
     3121 aaattatttg gtcttatttt agtattaaca tttgcagttg tattagcagc ttgcggtaat
     3181 ggaaacaaaa gtggcagtga cgacaagaaa ataacagtag gtgcttcacc agcaccacat
     3241 gctgaaattt tagaaaaagc aaaaccatta ttagagaaaa aaggttatga actagatatt
     3301 aaaacaatta acgattacac tacacctaat aaattactag acaaaggtga aattgacgca
     3361 aactatttcc aacatacacc atatttaaac acagagaaaa aggataaagg ttacaaaatc
     3421 gtaagtgccg gtgatgt
//
LOCUS       DAMQWL010000182         3427 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.188, whole genome shotgun sequence.
ACCESSION   DAMQWL010000182 DAMQWL010000000
VERSION     DAMQWL010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3427
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.188"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(307..2916)
                     /gene="adhE"
                     /locus_tag="PF788_002604"
                     /gene_synonym="adhC"
     CDS             complement(307..2916)
                     /gene="adhE"
                     /locus_tag="PF788_002604"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDG6304840.1"
                     /translation="MLTIPEKENRGSKEQEVAIMIDALADKGKKALEALSKKSQEEID
                     HIVHQMSLAAVDQHMVLAKLAHEETGRGIYEDKAIKNLYASEYIWNSIKDNKTVGIIG
                     EDKEKGLTYVAEPIGVICGVTPTTNPTSTTIFKAMIAIKTGNPIIFAFHPSAQESSKR
                     AAEVVLEAAMKAGAPKDIIQWIEVPSIEATKQLMNHKGIALVLATGGSGMVKSAYSTG
                     KPALGVGPGNVPSYIEKTAHIKRAVNDIIGSKTFDNGMICASEQVVVIDKEIYKDVTN
                     EFKAHQAYFVKKDELQRLENAIMNEQKTGIKPDIVGKSAVEIAELAGIPVPENTKLII
                     AEISGVGSDYPLSREKLSPVLALVKAQSTKQAFQICEDTLHFGGLGHTAVIHTEDETL
                     QKDFGLRMKACRVLVNTPSAVGGIGDMYNELIPSLTLGCGSYGRNSISHNVSATDLLN
                     IKTIAKRRNNTQIFKVPAQIYFEENAIMSLTTMDKIEKVMIVCDPGMVEFGYTKTVEN
                     VLRQKTEQPQIKIFSEVEPNPSTNTVYKGLEMMVDFQPDTIIALGGGSAMDAAKAMWM
                     FFEHPETSFFGAKQKFLDIGKRTYKIGMPENATFICIPTTSGTGSEVTPFAVITDSET
                     NVKYPLADFALTPDVAIIDPQFVMSVPKSVTADTGMDVLTHAMESYVSVMASDYTRGL
                     SLQAIKLTFEYLKSSVEKGDKVSREKMHNASTLAGMAFANAFLGIAHSIAHKIGGEYG
                     IPHGRANAILLPHIIRYNAKDPQKHALFPKYEFFRADTDYADIAKFLGLKGNTTEALV
                     ESLAKAVYELGQSVGIEMNLKSQGVSEEELNESIDRMAELAFEDQCTTANPKEALISE
                     IKDIIQTSYDYKQ"
BASE COUNT          994 a          643 c          521 g         1269 t
ORIGIN      
        1 tatatatata gtatttacat attacatatc gtttgaacaa ttaattactt ttaaaccgca
       61 ttattttcgc ctttttattt atatgaaatt aaaaataatt atactctaaa gtagtaatag
      121 tttgtgaaat gagtatcaat cttaatattt tctttattta aaaaaatgat tgtctagttt
      181 gtatctctct gaagatttgg caataaataa aagccgataa ccgtataatg attatcgact
      241 taaagtttat gtggcatttt ttacttttgt aatttcaggt gagttagatg attattatca
      301 gatagattat tgcttataat catatgatgt ttgaatgata tctttgattt cactgattag
      361 tgcttcttta ggattagcag ttgtacattg atcttcaaat gcgagctctg ccattctatc
      421 aattgactca tttaattctt cttcagacac accttgtgat ttcaaattca tttcaattcc
      481 gactgattga cctaattcgt agacagcttt agctaatgat tctacgagtg cttctgtcgt
      541 attacctttt aatcctaaga atttggcaat atctgcataa tctgtatctg ctctgaagaa
      601 ctcatattta gggaataatg catgtttttg cgggtctttg gcattataac ggataatatg
      661 cggtagtaat atcgcattcg ctctaccatg cggaatacca tattcgccac caattttatg
      721 cgcaattgag tgtgcaatgc ctaagaatgc atttgcaaat gccataccag ccaaagttga
      781 tgcgttatgc attttctctc ttgaaacttt atcacccttt tcaacagatg attttaaata
      841 ttcgaacgtc aatttaatcg cttgtagact caaacctctt gtgtagtctg aagccattac
      901 agatacatat gattccattg catgcgttag tacatccatt cctgtatctg ctgtaacgct
      961 ttttggcaca ctcatcacaa attgagggtc aataattgca acgtcaggtg ttaaagcaaa
     1021 atcagccaac ggatatttta catttgtttc actatctgtg ataactgcaa atggtgttac
     1081 ttctgaacct gtacctgatg tcgtagggat acaaatgaac gtcgcatttt caggcatgcc
     1141 tattttataa gtacgtttac cgatgtctag gaacttttgt ttagcaccga agaatgatgt
     1201 ctcagggtgt tcaaagaaca tccacattgc ttttgcagca tccatcgctg aaccaccacc
     1261 aagtgcaatg attgtatccg gttggaaatc aaccatcatt tccagacctt tatatactgt
     1321 attagttgat gggttcggtt cgacttcgct aaatatttta atttgaggct gttccgtttt
     1381 ttgtcttaat acattctcaa ctgtttttgt ataaccgaat tctaccatac cagggtcaca
     1441 gacaatcatc actttttcaa tcttgtccat tgttgttaga ctcatgattg cattttcttc
     1501 aaaataaatt tgagcaggca ccttgaaaat ttgagtatta ttacgtcgtt tagcaatcgt
     1561 tttaatgttt aataaatctg tcgcactaac attatgtgaa attgagtttc taccgtagga
     1621 accacaacct aatgttaaag acggaatcaa ttcgttatac atatcaccaa tacctccaac
     1681 cgctgatggt gtatttacaa gtacacgaca agctttcatt cttagtccaa aatctttttg
     1741 taatgtttca tcttctgtat ggataacggc tgtgtgtcct aatccaccaa aatgtagtgt
     1801 gtcttcacaa atttgaaatg cttgttttgt agattgggct tttactaagg ctaatactgg
     1861 agataatttt tcacgagata acggatagtc tgaacctaca ccgctaattt cggctatgat
     1921 aagttttgta ttttcgggga caggtatacc tgctaattca gctatttcaa ctgcagattt
     1981 accgacaata tcaggcttaa tacctgtttt ttgttcattc ataattgcat tttctaagcg
     2041 ttgtaattca tcttttttaa caaagtatgc ttgatgtgct ttaaattcat tagtaacatc
     2101 tttataaatt tctttatcaa tgactacaac ttgttcagaa gcacaaatca taccattatc
     2161 aaatgttttt gaaccaatga tatcatttac tgcacgttta atgtgtgctg ttttttcaat
     2221 gtaagacggc acgttacctg gtcccacacc taatgccggt ttgccagttg aatatgcaga
     2281 cttaaccatg cccgaaccac ctgttgctag aactaatgca atacctttgt gattcattaa
     2341 ttgttttgtt gcttcgatag aaggcacttc aatccactga ataatatctt taggtgcacc
     2401 tgccttcatt gccgcttcta atacaacttc tgctgcacgc ttcgacgatt cttgtgcact
     2461 tggatggaat gcaaaaatga ttggatttcc tgtcttaatt gcaatcatcg ctttaaaaat
     2521 agttgtcgac gtaggatttg ttgttggcgt aacaccacaa ataacaccaa ttggttccgc
     2581 tacatacgtt aatccttttt ctttatcttc accaataatc cctactgtct tattgtcttt
     2641 tattgaattc catatatatt cagaagcgta taaattttta atcgctttat cttcgtatat
     2701 acctcttcca gtttcttcat gtgctaattt tgctagcacc atatgttgat caacagctgc
     2761 taagctcatt tgatgaacaa tatgatcaat ttcttcttgt gactttttag ataatgcttc
     2821 taatgctttt ttccctttgt cagctagagc atcaatcata attgccactt cttgttcttt
     2881 cgatccacga ttttcttttt caggtatagt taacatatac aaccactcct ttatactttg
     2941 tgaattattt cacaaacatt atagtacatg tctctcagga tataaagaaa attctataca
     3001 aaaaagttta atttcgaata ttatttgaac aaatatcaaa ttttaaaata aatgttttca
     3061 tgaaatcatt gttatttcgg tgtttttaga atgattttat aatcataatt ttttcaatga
     3121 cataatttat tcataattat atatttaatt ctgaatattc tttaatagcc taaaaagctt
     3181 gttatatcgc acaaaacaca acattaaaag gtccttgtcg atacctatca acagatgtta
     3241 caaataaaaa ccacccgtgt gaacgggtgg tttgttctgc ggctataagc cttccttact
     3301 ggccagccct aaaagggcac tgacaagtca gccaactgca ctactattcc agcaatccta
     3361 aaggtttact cttttttctt tcttttttta tttttctctc cagtgaaagg atctaaatat
     3421 tcttcca
//
LOCUS       DAMQWL010000183         3396 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.189, whole genome shotgun sequence.
ACCESSION   DAMQWL010000183 DAMQWL010000000
VERSION     DAMQWL010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.189"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            103..399
                     /locus_tag="PF788_002605"
     CDS             103..399
                     /locus_tag="PF788_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000179889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDG6304841.1"
                     /translation="MATKKDVHDLFLNHVNSNAVKRRKMMGEYIIYYDGVVIGGLYDN
                     RLLVKATKSAQQKLQDNTLVSPYPGSKEMILILDFTEATNLTDLFKTIKNDLKK"
     gene            complement(471..1691)
                     /locus_tag="PF788_002606"
     CDS             complement(471..1691)
                     /locus_tag="PF788_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDG6304842.1"
                     /translation="MTDLLKIKNFRLFFLAEIISAFGVGISTVGANWYLIDKTNDSQL
                     LGIMLALNVLSGFLASPIIGGLADKYNRRNIILITYLLQVILYLLIVIALVMIGFETY
                     LVIGFAIVNGIGWTTYMATSRSLVKQILKPDQYTDANSLLEISLQTGMFIAGGLSGIL
                     YKINGFTLIIAMTIMMFLISIFMLFRLHVDKPTHSEEESTNSLLQEYLLGWKFLKDNM
                     MIFIFGVISIIPMVFTMIFNISLPGYVYNVLKLSSVQFGFSDMLYGIGGLCAGLISAI
                     LSKKISTKVLIFLLYFILVINSALFIWINSAFYLFIGSFILGYSISSIRIYMNTAIMN
                     TVSDKYVGRSFTIWTSISLLLQSLIAPFLGRWINEINDKFGFYIILILSLLIFVTLLL
                     VNKTGKIKYAHKEE"
     gene            complement(1684..2234)
                     /locus_tag="PF788_002607"
                     /pseudo
     CDS             complement(1684..2234)
                     /locus_tag="PF788_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498649.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin family protein"
     gene            2347..3207
                     /locus_tag="PF788_002608"
     CDS             2347..3207
                     /locus_tag="PF788_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDG6304843.1"
                     /translation="MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLD
                     VKLFYRKKYGMELTEEGLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYL
                     YRYYNKISEWLAEHPYVNLKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIP
                     ITEERLIFVTNKEMKDFKLNDIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFL
                     GIESLKKHLKNSGGIALLPEFIVADELENKSLFQIDVDVDIPNLETTLIINPESNKQV
                     LESFVKDVFL"
BASE COUNT         1281 a          470 c          522 g         1123 t
ORIGIN      
        1 ttgattttaa ctacgcatat aattatagat aaaattaaga gcaacacgaa atgaatcatt
       61 aatacgaatg tgattaaaca taaaactgaa ggagcgatta caatggcgac taagaaagat
      121 gtacatgatt tatttttaaa tcatgtgaat tcaaacgcgg ttaagagaag aaagatgatg
      181 ggagaatata ttatttatta tgatggcgtg gttataggtg gtttgtatga taatagatta
      241 ttggtcaagg cgactaaaag tgcccagcag aaattgcaag ataatacatt agtttcgcca
      301 tatccaggtt ctaaagaaat gatattaatt ctagacttta ccgaagcaac aaatctcact
      361 gatttattta agaccataaa aaatgatttg aaaaagtgaa gtagtgaagt gtgggtgcag
      421 agagaactaa gcccatcgat aaatggtcgc ttgttaaaga agagtgacgg tcactcttct
      481 ttatgtgcat attttatttt gcctgttttg ttaacaagca gcagtgtaac aaatatgagt
      541 aaggataaaa tgagtataat atagaaaccg aatttatcat taatttcatt aatccatctt
      601 cctaaaaatg gagcaattaa actttgcagt aacaatgaaa ttgacgtcca tatcgtaaat
      661 gagcgaccga catatttatc tgaaacagtg ttcattatag ctgtattcat ataaattctg
      721 attgatgaaa ttgagtagcc tagtataaat gatcctatga ataagtaaaa tgctgagttt
      781 atccaaataa atagtgctga atttatgact aatatgaaat ataacaaaaa tatcaatact
      841 ttagttgaga ttttcttcga aagaatagct gaaattaaac ctgcacataa tcctccaatg
      901 ccatataaca tatctgaaaa accaaattgt acagacgaaa gttttaaaac attataaaca
      961 tatcctggta atgatatgtt aaagatcatt gtaaacacca ttggtatgat tgaaataact
     1021 ccaaaaataa atatcatcat gttgtctttt aaaaatttcc atcctaataa atattcttgc
     1081 aataagctat ttgttgattc ttcctctgaa tgagttggtt tatctacatg caatctaaat
     1141 aacataaaaa tgctgattag aaacatcatt atagtcatcg ctataattag agtgaatcca
     1201 tttattttat ataatattcc tgataatcca cctgcaataa acatacctgt ttgcaaacta
     1261 atctctaata gagaatttgc atctgtatat tgatctggtt ttaatatctg tttaactaaa
     1321 cttctagatg ttgccatata cgtagtccaa cctatcccat taacaatcgc aaatccaatc
     1381 actaaatagg tctcaaatcc tatcattacg agtgctatga caatgagtaa atataatatt
     1441 acctgaagaa gataggtgat taaaataata tttcgtctat tatatttatc ggctagtcca
     1501 cctattatag gagaagctaa gaaaccggat aatacattta aagctaacat aatacctaat
     1561 agttgggagt cgttagtttt gtcgattaaa taccaattag ccccaactgt actaattcca
     1621 actccgaatg ctgaaattat ttctgctaaa aagaacaatc tgaagttttt aattttcaac
     1681 aaatcagtca taaatatcac cttttttcaa tgcaagattt atatttgcga gctcttctat
     1741 aaattgagag tcgtttaaaa tatcgaatgg tttattgcct tcgccgatca aaaatctata
     1801 gttagtaata ttcataaact caaatattaa tttgaattgg ttgactaaag gttgtgcttt
     1861 ggtatgcgga ttgtcgccac ctatgattaa aatcaaatac tttttttgtg acatgatttc
     1921 tttgaagttg tctatttgcg tatctcgcaa tgactcggtc catctatcaa tgaagagttt
     1981 taaagacgca ctcatggagt accaatagag tggtgttgaa aaaataataa tatctgattc
     2041 taaaactttg attaaaattt gttcgtaatc atcattatga aagttggcac ctttgctatg
     2101 acgattatct gtaacctttt caatgttgct ttgatataaa ttcacaaagt tgacttttaa
     2161 attcttcaat agattctcta ctgcgatagc tgaattgcca cctttctact acttccaaat
     2221 aaacaagtaa tcatagtcat aactcctttc gatttacctt tataataata tttaatatat
     2281 tattattaaa tcagaattct tagaattcag gattcgataa aagggaaccc taaaggaggt
     2341 actactttga acttaaacat tttaaaatca tttttagtaa ctagtgaaac aaagaacctt
     2401 actaaagcat cagagttact taactattca cagtcaactg tatctacaca tattgaaaaa
     2461 ttagaaaggc aattagatgt taaattattt tatagaaaaa aatatggtat ggaactaacg
     2521 gaagaaggct tagcatacgt taaatacgct aaagtgattt tagatagtaa tagcgaatac
     2581 gagagagaaa taaaaggact ttacaataag aaggtaaata taagtattaa catgcaagaa
     2641 agtcagtatt tgtatcgcta ctataataag attagtgaat ggttagctga acacccatat
     2701 gtaaacttga agtttaaatc cgcacattct aatttctata ttaaagaaga aattgctaat
     2761 ttcaaatcgg atattagcct tatcacagac gaaaagatta ttaatagtaa cttaactgct
     2821 attcctataa ctgaagaacg tttaatattt gttactaaca aagagatgaa agatttcaaa
     2881 ttaaacgata ttcaaaacca tacattactt gttactgaaa aagggtgtag ttacagagaa
     2941 cagttagaaa tgattttata taaatatagc ttttcaacaa aacaaatgat tgaatttcta
     3001 ggaattgagt cattaaaaaa acacttgaaa aattcaggtg ggattgcgct attgccggaa
     3061 tttattgttg cagatgaatt agaaaataaa agtttgtttc aaatagacgt agatgtcgat
     3121 attccgaatt tagaaacaac attgataatt aatcctgaat cgaataagca agtacttgaa
     3181 tcttttgtaa aagatgtttt tttataatta ttggtgaaaa cgtgtagtta tggtgaaact
     3241 caaagataat aatttaaatg agatgttaat gaaaaagtaa ttcaatataa aaacaggtga
     3301 tttatatctt taataaggat tatttctagt tgaaatttca aattgcgggc attcattttc
     3361 aaaatagtaa agaatttaat agatgaaaac ctttga
//
LOCUS       DAMQWL010000184         3387 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.190, whole genome shotgun sequence.
ACCESSION   DAMQWL010000184 DAMQWL010000000
VERSION     DAMQWL010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.190"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..569)
                     /locus_tag="PF788_002609"
     CDS             complement(<1..569)
                     /locus_tag="PF788_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000371251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4393 domain-containing protein"
                     /protein_id="HDG6304844.1"
                     /translation="MDPILGKGIDKIIQGAADGPIKTLNSTWDLIFGGYHNWVAKIQY
                     KRELDLTDFKANIESKVKKIPDNNLQEPELSIIGPAIESSKFYISERVIRDLFSNLIA
                     SAMDNRKTNDVHHSFVELIKQMSPKDAILFKFLCNQKVIPAVRYKYIRDNSKAGDFLS
                     DSIISNSPIDLNSTEISLNNLERIGLLKI"
     gene            633..1370
                     /locus_tag="PF788_002610"
     CDS             633..1370
                     /locus_tag="PF788_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001668920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDG6304845.1"
                     /translation="MTDQPSYYSIITANVRYDNRLTDSEKLLFAEITSLSNKYGYCTA
                     SNGYFAKLYEVTKVTVSRRIANLKECGYLHVEIIRNGNEIKQRKLYPLTEMIRPINTN
                     DNTPINNSVNTPIITNVKENNTSINNTSNNNINRVDILSGDPTRIPYKEIIDYLNEKT
                     GKKFKHNTTKTKDFIKARWNQDFRLEDFKKVIDIKTAEWLNTDSDKYLRPETLFGNKF
                     EGYLNQKIQPTGTDQLERMKYDESYWD"
     gene            1380..2153
                     /locus_tag="PF788_002611"
     CDS             1380..2153
                     /locus_tag="PF788_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDG6304846.1"
                     /translation="MKPLFDEKINKSLKKYQPIEVILRQNCDKCGHQYDLYKFENGYE
                     YKDGCECEIQRLAYEEYKRNKQKKLDYIFNQSNVNPSLRDATVNNYKPQNEKQVQAKQ
                     TAIEYVQGFSTKEPKSLILQGSYGTGKSHLAYAIAKTVKAKGHTVAFMHIPMLMDRIK
                     ATYNKNAVETTDELVRLLSDIDLLVLDDMGVENTEHTLNKLFSIVDNRVGKNNIFTTN
                     FSDKELNQNMNWQRINSRMKHNARKVRVIGDDFRERDAW"
     gene            2147..2305
                     /locus_tag="PF788_002612"
     CDS             2147..2305
                     /locus_tag="PF788_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304847.1"
                     /translation="MVTKEFLKTKLECSDMYAQKLIDEAQGDENKLYDLFVQKLAERH
                     TRPAIVEY"
     gene            2318..2539
                     /locus_tag="PF788_002613"
     CDS             2318..2539
                     /locus_tag="PF788_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3269 family protein"
                     /protein_id="HDG6304848.1"
                     /translation="MPKEKYYLYREDGTEDIKVIKHEDNVNEVYSLTGAHFSDEKKIM
                     TDCDLKRFKGAHGLLYEHQLGLQATIFDI"
     gene            2549..2953
                     /locus_tag="PF788_002614"
     CDS             2549..2953
                     /locus_tag="PF788_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1064 domain-containing protein"
                     /protein_id="HDG6304849.1"
                     /translation="MSKYNAKKVEYKGIVFDSKVECEYYQYLESNKNGTNYDRIEIQP
                     KFELLPKLDKQRKIEYIADFALYLDGKLIEVIDIKGMPTEVAKLKAKIFRHKYRNIKL
                     NWICKAPKYTGKTWITYEELIKARREHKREMK"
     gene            2958..3143
                     /locus_tag="PF788_002615"
     CDS             2958..3143
                     /locus_tag="PF788_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001187261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3113 family protein"
                     /protein_id="HDG6304850.1"
                     /translation="MQQQAYINATIDIRIPTEVEYKHFGDVDDEKETLADYLYKNPDK
                     LLEYDNLKIRNVNVEVE"
     gene            3144..>3387
                     /locus_tag="PF788_002616"
     CDS             3144..>3387
                     /locus_tag="PF788_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304851.1"
                     /translation="MAKTARIVRIHDKPYRFSKFEMELIESHGITAGMVSKRVKDGWE
                     LHEAMDAPEGTRLSEYREKKTIERLEQARLERKLERK"
BASE COUNT         1367 a          513 c          604 g          903 t
ORIGIN      
        1 tcaattttta ataaaccaat tctttctaaa ttatttaatg aaatttctgt tgaatttaaa
       61 tcgattggtg aattagaaat aatactatct gacaaaaagt cgcctgcctt actattgtct
      121 cgtatatatt tgtatcttac agccggaata actttttgat tgcatagaaa tttaaacaat
      181 attgcatctt taggtgacat ttgtttaata agctcaacaa aagagtgatg tacgtcattt
      241 gttttgcgat tgtccattgc agatgcaatt aaattagaga aaagatctct tattactctt
      301 tcgctaatat aaaatttaga actttcaata gcgggtccaa ttattgaaag ttcaggttct
      361 tgtagattat tatcaggtat cttttttacc ttagattcaa tattagcttt aaagtcagtc
      421 aagtctaatt ctcgtttata ttgtatttta gcaacccagt tatgatatcc accaaaaatt
      481 aaatcccaag tagaatttaa tgttttgata ggtccatctg cagcaccttg aataatttta
      541 tcaatacctt tacctaaaat aggatccata attattcacc cccaatctaa cgcagtagcg
      601 ataacaaaat tataccagaa aggagaatca acatgactga ccaaccaagt tactactcaa
      661 taattacagc aaatgtcaga tacgataacc gacttactga cagcgaaaag ttactttttg
      721 cagaaataac gtctttaagt aacaagtacg gatactgcac agcaagtaat ggttactttg
      781 cgaaactata tgaagttaca aaagttactg tatcacgccg tatagccaac ttaaaagaat
      841 gtggatattt acatgttgaa atcattagaa atggtaatga aattaaacaa agaaagctat
      901 accccttaac agaaatgata agacctatta acacaaatga taatacccct attaacaatt
      961 ctgttaatac ccctattatc acaaatgtta aagagaataa tacaagtatt aataatacaa
     1021 gtaataacaa tataaataga gtagatatat tgtcgggaga cccgacacgc atcccatata
     1081 aagagattat tgattatctt aacgaaaaga ctggcaagaa gtttaaacat aatacaacta
     1141 aaacgaaaga ttttattaaa gcaagatgga atcaagattt taggttggag gattttaaaa
     1201 aggtaattga tattaaaaca gctgagtggc ttaacacgga tagcgataaa taccttagac
     1261 cagaaacact ttttggcaat aaatttgagg ggtacctcaa tcaaaaaata caaccaactg
     1321 gcacggatca attagaacgt atgaagtacg acgaaagtta ttgggactag gaggaagtta
     1381 tgaaaccatt atttgacgaa aaaataaata aaagtttaaa aaaatatcaa ccaatcgaag
     1441 taatactaag acagaattgc gataaatgcg ggcatcaata tgacttatat aagtttgaaa
     1501 atggatatga atacaaagac ggttgcgaat gtgaaattca aagattggct tatgaagaat
     1561 acaaaaggaa taaacaaaag aaacttgatt atattttcaa tcaatcaaat gttaatccgt
     1621 ctctaagaga tgcaacagtt aacaactata agccacaaaa tgaaaaacaa gtacaagcta
     1681 aacaaacagc aatagagtac gttcaaggct tctctacaaa agagccaaaa tcattaatat
     1741 tgcaaggttc atacggaact ggtaaaagcc acctagcata cgctatcgca aaaacagtta
     1801 aagctaaagg acatacggtt gcttttatgc atataccaat gttaatggat cgtatcaaag
     1861 cgacatacaa caaaaatgca gtagagacta cagacgagct agtcagattg ctaagtgata
     1921 ttgatttact tgtactagat gatatgggtg tagaaaacac agaacacact ttaaataaac
     1981 ttttcagcat tgttgataac agagtaggta aaaacaatat ctttacaaca aactttagtg
     2041 ataaagaact aaatcaaaat atgaactggc aacgtatcaa ttcgagaatg aaacacaacg
     2101 caagaaaagt aagagtaatc ggagacgatt tcagggagcg agacgcatgg taaccaaaga
     2161 atttttaaaa actaaacttg agtgttcaga tatgtacgct cagaaactca tagacgaggc
     2221 gcagggcgac gaaaataagt tatatgacct atttgtccaa aaacttgcag aacgtcacac
     2281 acgccccgct atcgtcgaat attaaggagt gttaaaaatg ccgaaagaaa aatattactt
     2341 ataccgagaa gatggcacag aagatattaa ggttatcaaa catgaagaca acgtaaatga
     2401 agtttattcg ctcacaggag cccatttcag cgacgaaaag aaaattatga ctgattgtga
     2461 cctaaaacga tttaaaggcg ctcacgggct tttatatgag catcagttag gtttgcaggc
     2521 aacgatattt gatatttaga ggtggacgat gagtaaatac aacgctaaga aagttgagta
     2581 taaagggatt gtatttgata gcaaagtgga gtgtgaatat taccaatatt tagaaagtaa
     2641 taagaatggc actaactatg atcgtatcga aatacaaccg aaatttgaat tattaccaaa
     2701 attagataaa caacgaaaga ttgaatacat tgcagatttt gctctatatc tcgatggcaa
     2761 actgattgaa gttatcgaca ttaaaggtat gccaaccgaa gtagcaaaac ttaaagctaa
     2821 gattttcaga cataaataca gaaacataaa actcaattgg atatgtaaag cacctaagta
     2881 tacaggtaaa acatggatta cgtacgagga attaattaaa gcaagacgag aacacaaaag
     2941 agaaatgaag tgatctaatg caacaacaag catatataaa cgcaacgatt gatataagaa
     3001 tacctacaga agttgaatat aagcattttg gtgatgtgga tgatgaaaaa gaaacgctgg
     3061 cagattactt atataagaat ccagacaaat tactagagta tgacaattta aaaattagaa
     3121 atgtaaatgt agaggtggaa taaatggcga aaacagcaag aattgtaagg atacacgata
     3181 aaccttatag gttcagtaaa tttgaaatgg aattaattga aagtcacggt ataaccgctg
     3241 gaatggtttc taagagagta aaagacggtt gggaactaca tgaagcaatg gacgcaccag
     3301 aaggtacgcg tttaagcgag tacagagaaa agaaaacaat agaaagactg gaacaagcta
     3361 gactcgaacg caaattggaa agaaagc
//
LOCUS       DAMQWL010000185         3372 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.191, whole genome shotgun sequence.
ACCESSION   DAMQWL010000185 DAMQWL010000000
VERSION     DAMQWL010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.191"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(40..732)
                     /locus_tag="PF788_002617"
     CDS             complement(40..732)
                     /locus_tag="PF788_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HDG6304852.1"
                     /translation="MNKAERQNLIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLE
                     NQGVKIYAHYGKNGGYQIQQAQSKIALNLSETQLSALFLVLNESQSYSTLPYKSEINA
                     IIKQCLSLPQTRLRKLLKRMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVD
                     DNIKAENVIFIGLLCKHGHWHAVIYDIAQDKTAELEIENIIDISYSFGKTIQTRDISI
                     DNYHQFLNPIDS"
     gene            1117..1914
                     /locus_tag="PF788_002618"
     CDS             1117..1914
                     /locus_tag="PF788_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HDG6304853.1"
                     /translation="MTDKTLQQIDKLICSWLKQIDNVIPQLIMEMTTETKRHRFDLVT
                     NVDKQIQQQFQQFLATHFPEHQLLAEEKSNEMITNEINHLWIMDPIDGTANLVKQQED
                     YCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEEPPSLKLEDAIISFN
                     AQVMNLDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAE
                     LLNLKMTTLDGKAIDHLKGAPFIISNKACHETVLKILNANGGYQKYR"
     gene            2047..2994
                     /locus_tag="PF788_002619"
     CDS             2047..2994
                     /locus_tag="PF788_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000830946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HDG6304854.1"
                     /translation="MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNK
                     IHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPK
                     TKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDM
                     DGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFG
                     RQQRQQIVLEAMANKIASPSSITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDT
                     INKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE"
BASE COUNT         1216 a          432 c          621 g         1103 t
ORIGIN      
        1 aagatatttt ctaattgaaa atcatcttac tgctgttttt taggaatcga tggggtttaa
       61 aaattgatga tagttatcaa tggatatgtc tctggtttga atcgtcttac cgaatgaata
      121 cgaaatatct ataatatttt caatttcgag ttcggcagtt ttgtcttgag caatgtcata
      181 aatgactgca tgccaatgtc catgtttaca caaaaggcca ataaatataa cgttttcagc
      241 tttaatatta tcatcaaccc tatgatctac taacatcaca tttcgttctg tacaataaat
      301 taaaatgtcg gaaaacagca ttgggagtgt catatgttgt gtgtcatcaa atttaatata
      361 aaagtccatg cgtttaagca attttcttaa gcgtgtttgt ggaagactta aacattgttt
      421 tataattgcg ttgatttcgc ttttatatgg taatgtcgag tacgactgac tttcattaag
      481 cactaaaaat aaggctgata attgtgtttc agataagttt aatgcaattt tagattgtgc
      541 ttgttgtatt tggtaaccac catttttccc ataatgcgca taaattttaa caccttgatt
      601 ttctaaatca tcaatatctc ttaaaattgt gcgtttggat acgttgcaat atttagctaa
      661 ttctaaagcg gtcatttttt tattttgttg aattgcagta attattaaat tttgcctttc
      721 agctttattc atgacagcca cctcctaaaa gatgatatat tacacaaagt ataacataag
      781 agtgacaatg aggacatttt caatatcttt taaaaaaaat cgtaaaaatt ttgtggaaaa
      841 cgcttacatt ttaaaaaaga ttgtgctatg atattacttg taacaggggg agcgattaaa
      901 caaaggggta gagctatata acagatagct tttaatcgtt caagttacat cacaacatct
      961 tcaatattta ttacttactt tcctttctat ttgtcggcta gcacgtgact agccgatttt
     1021 tttatgcata aaatgaagaa gtcttcagtt gtattgttga ttcttttaat atagggtaat
     1081 aataaaatga taatgatatg agaagtggtg gacgaaatga cagataaaac attacagcaa
     1141 atagataagt taatatgttc gtggttgaaa caaatagaca atgttattcc gcaattaatt
     1201 atggaaatga ctacagaaac taagcgtcat cgatttgatt tagttacaaa tgtagataaa
     1261 cagattcaac aacaattcca acaattttta gcaacacatt ttccggaaca ccaactatta
     1321 gcggaagaaa aaagtaatga aatgattacg aatgaaatta atcatttatg gattatggat
     1381 cccattgatg gaactgccaa tttagtaaaa cagcaagaag attattgtat tatattggcg
     1441 tatttttatg aaggtaaacc aatgttatcg tacgtatatg attatccgca taaaaagctt
     1501 tataaagcaa tacgaggaga aggtgctttt tgtaatggaa ttaagatgga agaaccacca
     1561 tcgttaaaat tggaagacgc tattatatcg tttaatgcac aagtgatgaa tctagatacg
     1621 gtgcaagatt tatttgacgc ctcatttagt tatcgtttag ttggtgcttg cggattagat
     1681 tctatgcgag tggcaaaagg tcaatttggg gcacatatta atacaaatcc taaaccttgg
     1741 gacattgctg cacagttttt atttgcagaa ctattgaatc taaaaatgac gactttagat
     1801 ggtaaggcaa ttgatcattt aaagggtgca ccttttatta taagtaataa agcatgtcat
     1861 gaaacggtac ttaaaatttt aaatgcaaat ggtggttatc aaaaatacag atagatattc
     1921 tctagagata aaaaatgata aaaaatagtt atacgtctac agaagtatag taaaaaaatt
     1981 attttactat ataataaata gagaaaacag acaaagtatg taaggaatag taaaggagtg
     2041 gtgggattga aacgttcgtc taaaagtaaa atgagcctac cgaaaaaaat atttttatgg
     2101 gtattcggta ttttagtaat cttagcgatt gtagctgttg tgtatgtagc tgctaaaatt
     2161 tttattactg gtaataagat acacaatccg ttagatcgca atcattcaga attaagagat
     2221 aaaaaagtga gtttaaacga tggtgatcca ttcacaatcg ctttatttgg tgtcgattca
     2281 gatgctgatc gtaagaaaaa gggtggcgga gagcgtagtg atagtattat gattttatct
     2341 atcaacccta aaacgaagaa aactgaaata gtaagtatac cgcgtgatac aagagcggaa
     2401 attgttggcc gtggtactac tgaaaaaatt gcacatgcct atgcatatgg tggaccaaat
     2461 atggctgtta aatcacttga aaaattaatg aatgtgccaa ttgatcatta tgcgacaatc
     2521 gatatggatg gtttgcataa tatgatagat agcatcggcg gtgttgatgt agtaagtaat
     2581 gatacattca ctgttgatgg tgttcgtttt acaaaaggac agcagacaca tgtaaatggt
     2641 gatcaagcat tgaagtttat tagaagtcgt aaagaagaag gtgctggtgg tgactttggt
     2701 cgacaacaac gtcagcaaat tgtgcttgaa gcgatggcca ataagattgc aagcccatca
     2761 tcgattacac attttaatag tctaatgaat gaaattcaaa ataatgttaa aacagattta
     2821 acattaggtg atttgaatac gattagaagc aattataaag atgctaatga cacgattaat
     2881 aaacatcaat tgagtggtca aggcggcatt caaagtgacg gattgtacta cttcattcct
     2941 agtgagcagt caaaagctga aagtactaag ttattaaaag ataatctaga gtagtaaact
     3001 aagggaaaat aagttatcaa aattgtacac aaattaatta gatagaatga tctgtaaata
     3061 gaataacgaa tagaactaat agcccgtaaa tagaaggtga taacactttg tatttatggg
     3121 ctattttatt taatgcctga tttgattttt ataaattaat ccattacaaa tttaatttaa
     3181 agataaatat taccttctaa atgatagtag atatttatca aacttgggtt attaattttc
     3241 agaaaaaggg tatttataaa tagtataacg atttttaggt gaggtgatta ttaaatattg
     3301 tcattaataa ggttgtgaaa gatatggcaa aaagcgtgaa acagataatt ggaaaactaa
     3361 taatgataat ta
//
LOCUS       DAMQWL010000186         3362 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.192, whole genome shotgun sequence.
ACCESSION   DAMQWL010000186 DAMQWL010000000
VERSION     DAMQWL010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3362
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.192"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(418..2601)
                     /locus_tag="PF788_002620"
     CDS             complement(418..2601)
                     /locus_tag="PF788_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HDG6304855.1"
                     /translation="MTENKGSSQPKKNGNNGGKSNSKKNRNVKRTIIKIIGFMIIAFF
                     VVLLLGILLFAYYAWKAPAFTEAKLQDPIPAKIYDKNGELVKTLDNGQRHEHVNLKDV
                     PKSMKDAVLATEDNRFYEHGALDYKRLFGAIGKNLTGGFGSEGASTLTQQVVKDAFLS
                     QHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAKYYFNKDLKD
                     LNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQWEDAKKIDL
                     KANLVNRTPEERQNIDTNQDSEYNSYVNFVKSELMNNKAFKDENLGNVLQSGIKIYTN
                     MDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGLVAISGGRDFKDVVNRNQATD
                     PHPTGSSLKPFLAYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDA
                     LRQSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQL
                     ASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKP
                     YGSAYGHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGFTPQYTMSVWMGF
                     SKVKQYGENSFVGHSQQEYPQFLYENVMSKISSRDGEDFKRPSSVSGSIPSINVSGSQ
                     DNNTTNRSTHGGSDTSANSSGTAQSNNNTRSQQSRNSGGLTGIFN"
     gene            complement(2598..3275)
                     /gene="recU"
                     /locus_tag="PF788_002621"
     CDS             complement(2598..3275)
                     /gene="recU"
                     /locus_tag="PF788_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HDG6304856.1"
                     /translation="MLCIINNVYYQTCVVKFMNYPNGKPYRKNSAIDGGKKTAAFSNI
                     EYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEAYFRTP
                     STTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKT
                     LDEVYLLPYSKFEVFWKRYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLIL
                     DESEDRV"
BASE COUNT         1033 a          590 c          540 g         1199 t
ORIGIN      
        1 agatatctat ttcgaatcgt aggtggattt cttatatcta tgattgtgaa aatatgttgc
       61 aaacatgttg atatttcact gattaacgta cacagggaat taataaatat atcaatttaa
      121 aacagcgtct aagatgacta tgagaaaata taatcataat tttaaaaatg ggaacaacca
      181 cttattcaaa ttcaataatt ttacatagct aaagatgtga atatgaaaaa ctatttagat
      241 gtttcaaaat gtatgtgaat gactgatttt acggtttcta ctaatatagc aatagcgtat
      301 gaatacttat aaaaaaagca ggaagtttta ccttcccacc ataaaagatg aagaacctaa
      361 aaaaatcctc ggctacacca taaatatggt ataactgagg attttatgtt gagtggatta
      421 gttgaatata cctgttaatc caccgctgtt tctagattgt tgagatctag tattgttatt
      481 tgattgtgca gtaccactgc tgtttgctga tgtgtcacta ccaccgtgtg tactacgatt
      541 tgtagtgttg ttatcttgac taccagaaac attgattgat gggatactac cacttactga
      601 gctaggacgt ttaaagtctt cgccatctct agatgaaatt tttgacatca cattttcata
      661 taagaactgt ggatattctt gttggctatg tcccacaaat gagttttcac catattgttt
      721 aactttactg aagcccatcc acactgacat agtgtattga ggtgtaaagc cgttaatcca
      781 cacgtctttc gctgcattat caggtaaatt atattgtgaa taagtttcag caccgtaagt
      841 accagtacct gtcttagcac ccatatttac tccagataca ccatggccat atgcagaacc
      901 atatggttta aatgtacctt ttagcatctc agctaacatg tatgcagtgt aatcactcat
      961 cgctttatgg ctagtatgat cgtattcgat tgtttcacca tcacgagtaa ctactttttg
     1021 aattgaatgc gcgttgttat aagtaccacc gttagcgatt gcagcaaatg ctgatgctaa
     1081 ttgtgttggt gagaattctg aagcagaacc accaagtact tcagatggac caatatcgcc
     1141 ttcgtagttt aagccaagtt tggcagcgaa tttcttaggt gcatcattac cagcattttg
     1201 cttaactgat tgccaagctt ttaaagctgg gatattgaaa ctttgtcgta aagcatcata
     1261 aatagataca gtaccgtgac tcttcgtatc atagtttcta aatgtagaac catcaacttg
     1321 atatgaagat tcatcttgaa tcgcatggtt tgttgcccat ttcatatttt caatggcagg
     1381 tccatacgct aagaaaggtt ttaaagatga accagtaggg tgaggatctg ttgcttggtt
     1441 tctgttaacg acgtctttga aatcacgtcc accagatata gcaactaaac caccagtttt
     1501 actatcaaga attgttgcac caacttgttg gtctttattc ttgtagaagc taccattatc
     1561 aacatcattt tgtaatgttt tttgaacatc tttatccatg tttgtataaa ttttaatacc
     1621 actttgtaat acattaccta aattttcatc tttgaatgct ttattattca ttaattcaga
     1681 ttttacaaag ttaacgtatg aattatactc agaatcttga tttgtatcaa tgttttgacg
     1741 ttcttcagga gtacgattta ctaagttcgc ttttaaatcg attttcttag catcttccca
     1801 ctgtttatct gtaatgcgtt tatgataatg cattaagtat aaaacagtgt ttttacgatc
     1861 ttcagcagct tttggatgat cataaatatt atagttgttt ggaacctgag gtaaaccggc
     1921 taaataagct tcttccgcta agtttaaatc ttttaaatct ttattaaagt aatacttagc
     1981 agcagcttta atacctgtta cgccatcaga atagtaaatt ttgtttagat atacttggaa
     2041 gatatcatct ttactatact cttgttctaa acgatatgat aagtatgctt cttgagcttt
     2101 acgtccaata gatttatgtt gtgataaaaa tgcatcttta acaacttgtt gtgttaatgt
     2161 tgaggcacct tcagaaccaa atccaccagt caagttctta ccaattgcac cgaataaacg
     2221 tttataatca agtgcgccat gttcgtagaa acgattgtct tcagttgcaa gtactgcgtc
     2281 tttcattgat ttcggcacgt cttttaaatt tacatgctca tgtctttggc cattatctaa
     2341 tgttttaaca agttctccgt tcttgtcata tatctttgca ggaatcggat cttgtaattt
     2401 agcttcggta aaagcaggtg ctttccaagc ataataagca aacaataaga tacctagtaa
     2461 aagaacaacg aaaaatgcaa taatcatgaa gccaataatc ttaataatcg ttctcttcac
     2521 atttctattc ttttttgagt tggatttccc accattatta ccgtttttct taggctgaga
     2581 agatcctttg ttttccgtca tacgcggtcc tcactttcat ctaatatcaa cttatcaact
     2641 gcttttagat agtctaatct tggttgatac tgataaggaa tatggtaacc attttttcgt
     2701 atttcatcaa ctgttataga ctttttaata ttatctttat atctcttcca aaatacttcg
     2761 aattttgaat agggtaaaag ataaacttca tctagcgttt taaaacgaat cattaaaaac
     2821 acaatacctt tttgttgata tgcatttttc atatgttcga cttgatggtc atgaatatta
     2881 tttaaaggaa aggacgtctt gtttttagtt tcctttgctt caaaatcaat ataataacct
     2941 tgataaacgc cgttgtaatc agttgttgaa ggtgtacgaa aataagcttc gttaatcaca
     3001 gctttactcc gcttaggata gttgacatta actatttgta ctggcgtagg ctttttgtga
     3061 ataactgcaa tgtcgctttt aagataaaac gtatttgaat gttcgatatc tttttcaagt
     3121 gacataccac gtccaccata ctcaatatta ctaaaggcag cggtcttttt ccctccgtct
     3181 atagcactat ttttacgata tggtttacca tttggataat tcataaattt caccacacaa
     3241 gtttggtagt aaacgttgtt tattatacac aacattatag tgaaacacca aacttaaatt
     3301 agtataaatg cgaaagacac aatacaccaa agcttatttt aacgtgattt cagcattaac
     3361 ac
//
LOCUS       DAMQWL010000187         3290 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.193, whole genome shotgun sequence.
ACCESSION   DAMQWL010000187 DAMQWL010000000
VERSION     DAMQWL010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.193"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..2455
                     /locus_tag="PF788_002622"
     CDS             <1..2455
                     /locus_tag="PF788_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lantibiotic dehydratase"
                     /protein_id="HDG6304857.1"
                     /translation="SELLVFIKTTVTNNNITFSNLAEKINQEFEINDITKVKVYIHNL
                     VSKEIIYSTIRPPLSYSDNLNYILNKLSLHNDDFVKKIREIQKLILAYEKTEIGFGEE
                     LYKDIIHHMKALFKCKNYLQIDTKIDMINNYLHQDIATNISEAAYLLWLLSRNNIGFT
                     DLKVLHNRFIEKYGFEQLVNIKDLISDITGFGTTIFQEEETDGNNIVMLKQKFLHALR
                     NNDEIVINEKDVESLINDNEINHYHAPMSADVYAELYLGRFYNQYNELIVISPLTASF
                     NAGATFGRFHHLIDTETLAKLEHEKGHYYQKMICDDNVEMISINNIPKYPRNHNVLTN
                     HDSYEYSLNLGSSNSYSKYELTLDDIYVGATFNKLYLYSSQLNKRVLFESNNMYNFLK
                     ECNLYRLLREISMESVKCIEPMNDVSIDSFSYSPRIRYKNVILKPAYWKINEMVLPLP
                     KNEEWDQQFLKYQEQFNIPNIVNLVYGDNKLLLNLSLANHRYLLMKEYKKHKRVRLVE
                     SFLPQSKNDHVYEIVTPIYKKSSYRGPEIEIPKYKNTDIEYDKDWFALHIHIDKPSQD
                     TFIIDNLYPFVKHLKDKGDIDQYFLMRYIKQGDILKLRLFRNDENYAEIYSILKNWLP
                     HVRQTTEVSDYEFVSYEPEFFRYGGKNTINEIEAFFEYDTNLAVNIIENDFKFDRPYI
                     VAISIMYLFEMFSISNEERMEIVNNYVPTSFKSKDIRPFKNELVTICNPANNFEYMAK
                     HYSGIYRILKDGNQILSKLNEGLKKTLTTKRSRIIGSLIHMRCNRIFGIDKDQETFVL
                     SIVKEIVKTQKHWCGDKND"
     gene            2448..>3290
                     /locus_tag="PF788_002623"
     CDS             2448..>3290
                     /locus_tag="PF788_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lanthionine synthetase C family protein"
                     /protein_id="HDG6304858.1"
                     /translation="MIDMNLILKKKFQEISEVDDFISKASTETDYFEPSTLSHGIPGI
                     ILFLDAYQKVFDINTEQIVHKYIMKLAPYLQSGQYNNSLFGGLSGIAFSMDLASQNGK
                     NYQNILNNIDGHIVNEIENKFDQILQEPLNPLNYDTVSGLAGIGRYLLNRVDENEFNV
                     KALKSILVYFKDIQYSKNSWVVPQESQFLESDKNYFTEGNINLGLAHGVLGPMSLFAL
                     CVIKGITIENHQHILKDMYKFIMDEKFCNHERWLQRYDLISERNHFNFIRNGWCYGNT
                     GVMTT"
BASE COUNT         1260 a          412 c          525 g         1093 t
ORIGIN      
        1 tagcgaatta ctcgtattca tcaaaaccac tgtgacgaat aataatatta ctttttcaaa
       61 tttagctgaa aagataaatc aagaatttga aattaatgat attactaaag tgaaagtata
      121 tatccataat cttgtctcaa aggaaattat atattcaaca atcagaccac cgttatcata
      181 tagcgataat ttaaattata ttttaaataa actttcttta cataatgatg attttgtgaa
      241 aaaaattaga gaaatccaga aattgatatt agcttatgaa aaaactgaaa ttggatttgg
      301 cgaggaatta tataaagaca ttattcatca tatgaaggca ctattcaaat gtaaaaacta
      361 tcttcaaatt gataccaaaa ttgacatgat taacaattat ttacatcaag atatagcaac
      421 aaatatatct gaagcagcgt acttattgtg gcttttatca agaaataata ttggattcac
      481 agatttgaaa gttcttcaca accgttttat tgaaaagtat ggatttgaac aactcgtgaa
      541 tattaaagat ttgatttcag atataacagg tttcgggaca acaatttttc aagaagaaga
      601 aaccgatgga aataatattg taatgcttaa gcaaaaattt ttacatgcct tgagaaataa
      661 cgatgagata gtcataaatg aaaaagatgt agagtcattg attaacgata atgaaatcaa
      721 tcattatcat gcgccaatga gtgcagatgt ttatgctgaa ctttatttag gacgttttta
      781 caatcagtac aatgagctca ttgttattag tcctttaacg gcgtctttta atgctggcgc
      841 tacatttggg cgatttcatc atttaattga tactgaaact ttagcaaaat tagaacatga
      901 aaaaggacat tattatcaga agatgatatg tgatgacaat gtagaaatga tttctataaa
      961 taacataccg aaatatccga gaaatcataa tgtattaact aatcatgact catacgaata
     1021 ttcattgaat ttaggaagta gtaatagtta ttcaaagtat gagcttacct tagatgatat
     1081 ttatgttggt gctaccttta acaaattata tttatattct agccaactaa ataaaagggt
     1141 actatttgaa tcaaacaata tgtataactt tttaaaagaa tgtaatttat atcgattgtt
     1201 acgagaaatt tcaatggaat ctgtgaaatg cattgaacct atgaatgatg tgagtattga
     1261 ttcatttagt tattcaccac gaatcagata taaaaatgtc attcttaaac cagcatattg
     1321 gaaaattaac gagatggtat tacctttacc taaaaatgaa gaatgggatc aacaattttt
     1381 gaaatatcaa gaacaattca atatacctaa tatcgtgaat ttagtttatg gagataacaa
     1441 gcttctacta aatttatcat tagctaatca tagatattta ttgatgaaag aatataagaa
     1501 gcataaacgt gtacgtttag tagaatcatt tttacctcaa tcaaagaatg atcatgtgta
     1561 tgaaattgtt acaccaattt ataaaaaatc atcttatcga ggacccgaaa tcgaaattcc
     1621 aaaatataaa aatacagata ttgaatatga caaagactgg tttgcattac atattcatat
     1681 cgataagcca tcgcaagata catttatcat cgacaatttg tatccatttg taaaacatct
     1741 taaagataag ggagatatag atcaatattt tttaatgcgt tatatcaaac aaggtgacat
     1801 tttaaagttg aggttattca ggaatgacga aaattacgca gaaatataca gcatcttgaa
     1861 gaattggtta ccacatgttc gacaaacgac agaagtttca gattatgaat ttgtatcata
     1921 cgagccagaa ttttttagat atggtggaaa gaacacgatt aatgaaatag aagccttctt
     1981 tgaatatgac acgaatttag ctgtcaatat tattgaaaat gattttaagt ttgatcgacc
     2041 atatattgtt gctatttcaa taatgtattt atttgagatg ttttcaattt ctaatgaaga
     2101 gcgtatggaa attgttaata actatgtacc tacatcattt aaaagtaaag atattagacc
     2161 ttttaaaaat gaacttgtaa ctatatgtaa tcctgctaat aattttgaat atatggctaa
     2221 acactatagt ggtatttatc gaattttaaa agatggcaac caaattttga gcaaattaaa
     2281 tgaagggctt aaaaaaactt taactactaa aaggtcaagg attattggca gcttaattca
     2341 tatgcgctgc aatcgaatat ttggcattga taaggatcaa gaaacatttg ttttatctat
     2401 tgtaaaagaa attgttaaaa ctcaaaagca ttggtgtggt gacaaaaatg attgatatga
     2461 atctaatatt gaagaagaag tttcaagaga tttcagaagt agatgatttc atttcaaaag
     2521 catctactga aaccgattat tttgaacctt caactttatc acatggtata ccaggtatca
     2581 ttttgttttt agatgcttat caaaaagttt tcgatattaa tactgagcaa attgtgcata
     2641 agtacatcat gaaattagca ccatatttac agagtggtca atataacaat tctttgtttg
     2701 gtggactttc aggtattgca ttttcaatgg atttagcatc gcaaaatggc aaaaattatc
     2761 aaaatatttt aaataatatt gatggtcaca ttgtaaatga aatagaaaat aaatttgatc
     2821 aaatattaca agaaccatta aatccattaa attatgatac tgtcagtgga ttagctggga
     2881 tagggagata tttgctaaat agagtagatg agaatgaatt taatgttaaa gcattaaaaa
     2941 gcatattagt atactttaaa gatattcaat attctaaaaa tagctgggta gtcccacaag
     3001 aaagtcaatt tttagagtct gataaaaatt attttactga aggtaatatc aatcttggcc
     3061 ttgcacatgg agtgctagga ccgatgtctt tatttgcatt atgcgtgatt aaaggaatta
     3121 cgattgaaaa tcatcagcac atattaaaag acatgtacaa atttatcatg gacgaaaaat
     3181 tttgtaacca cgaaagatgg ttgcagcgtt acgatttaat ttctgaacgt aatcatttca
     3241 attttattcg gaatggttgg tgttatggca atacgggtgt aatgacgacg
//
LOCUS       DAMQWL010000188         3283 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.194, whole genome shotgun sequence.
ACCESSION   DAMQWL010000188 DAMQWL010000000
VERSION     DAMQWL010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3283
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.194"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            40..237
                     /locus_tag="PF788_002624"
     CDS             40..237
                     /locus_tag="PF788_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002434445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304859.1"
                     /translation="MNRATLIEKIQNGEAFTHAFRVNHNTYYAGQLISLSLNKNGYIN
                     NNFEASRDIIRNIEVSILDYE"
     gene            complement(314..673)
                     /locus_tag="PF788_002625"
     CDS             complement(314..673)
                     /locus_tag="PF788_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002434158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304860.1"
                     /translation="MENTNSNMHKNDNSYVLSALSYLSIFFAPVILPLFVWILADEPT
                     SEHGKKAFINHIMTWVSFFIGRLAFIFSKEVFDKPLDHQLLIFSILLIITIIFFLIAL
                     ILYILNINRGIKILLKK"
     gene            complement(1203..2053)
                     /locus_tag="PF788_002626"
                     /pseudo
     CDS             complement(1203..2053)
                     /locus_tag="PF788_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558285.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2566..3063)
                     /locus_tag="PF788_002627"
     CDS             complement(2566..3063)
                     /locus_tag="PF788_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012656763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6304861.1"
                     /translation="MKLRALEYSDLLFVHELNNEYSIMSYWFEEPYESLTELQHLFDK
                     HLLDESERRFIVEDENQVVGIVELVEINYIHRNCEIQIIIKPEFSGKGYAKFAFEKAI
                     IYAFNILNMHKIYLYVDADNKKAIHIYESQGFKTEGLLKEQFYTKGKYKDAYFMSLLK
                     SEYIL"
BASE COUNT         1164 a          480 c          432 g         1207 t
ORIGIN      
        1 aaagatgaaa aagctataaa tattagccaa cccatttttg tgaacagagc aacattgatt
       61 gagaaaatac aaaatggtga agcatttacg cacgccttta gagtaaatca caatacttat
      121 tatgcaggcc aattaatttc tttatcattg aataaaaatg gttatattaa taacaacttt
      181 gaggcctcac gagatattat tagaaacatt gaagtaagta ttttagacta tgaataaagg
      241 taatactgat agaatacatt acaattaaaa aagggagtat aggactccct taataagttg
      301 atatataagt gacttatttt tttaatagaa ttttaattcc tctgttaatg ttcaagatat
      361 ataatattaa agcaattaaa aagaatataa tagtaataat taaaagaatg ctaaatatta
      421 ataattgatg atccaaaggt ttatcaaaga cttctttaga aaaaataaat gccaatctac
      481 ctataaaaaa actaacccaa gtcataatat gattaatgaa tgcttttttg ccatgttctg
      541 atgttggttc atcagcaagt atccatacaa ataaaggtaa aatgacaggt gcgaaaaaga
      601 tacttaaata actcaatgct gataaaacgt aactattgtc atttttatgc atattactat
      661 ttgtattttc cacttttttc accttcttta cttttcttta ctattataaa aacattaata
      721 gcgagctatt acaacagtta taagagaagc ttacgatatt gtaagtatgt gttgttataa
      781 tcaatataaa attaagaaag acctgagaat ttatattatc atccacaatc gaagtgagta
      841 gcgaaattta ttggaaaagg tacttatatt gaagatattg ttaatggttc atttttaaaa
      901 agccaagacg atttgaagtt aaaagcttct gacttcactg tcgaagataa ctataactac
      961 ggtgtactta tatttccaga gaatctttct cttacagata ataataagaa attggaatct
     1021 ttaataaaaa ctatactatt tacaggtaaa cgatatcaat atacttattt taaaatttga
     1081 tcttaataga taaggatata atgatttaaa caatttaaga gatattattt tcacaaaaaa
     1141 agaatgcttt ttgttagagg cactgaaccc ttaaaatggg aacttaataa aaacactatg
     1201 ttctaggctg ctaattctct gtattttaca ggggataagt agcctagttt ttgttgaatt
     1261 cgattattat tatagttttt aatgtatttt cgacaatatc tattacaata tgattagagt
     1321 tattaagctg attattgatg taaaaagttt cagactttag cgaggaatgg aaactttcta
     1381 tcggggcgtt atcggcaggt gttccctttc gggacatact tctgataatg cctttttctt
     1441 cgcataattg ataataagca taagatgtat aaacgctgcc ttgatcacta tgtaatatac
     1501 acccctcagg tatatcgatt tgatttaatg tatcattaac taaacgttgg tcttgtttat
     1561 catctatttt atacgccaca atttctccgt tataaatgtc cattatcgaa gataaataca
     1621 acatagaatg accaaatggt aaataagtaa tatcggttgt taatacttcc atgggacaac
     1681 tcgctttaaa ttgtctttgt aataaattgt ccgttttata atacggttta cctattcttg
     1741 tcgtcttttt aggtctaact cggcagttca aatgatgctt ctgcatcact ctctgtactc
     1801 tcttatgatt aattggtgat gtataacatt gattaatcaa tgctgtaatc ttacgataac
     1861 cgtaggtata ttgtttacca acatgttgtg aaaatctata actttcccca tttcgatacc
     1921 atcgccacca atttttcact tgtgttctat ttctaatatt taattctttc ataatttctt
     1981 ttgttggaaa tcctgctgct ttcatttcaa ctgctttata ctttgtttct actgaataag
     2041 aagctctttt catagaaaaa aaacacctcc gtatgattca ttttaatatg aattcaacga
     2101 aagtgttttt atataattcc cactattggg gtcagtctaa aattaaaatt gataactttt
     2161 ttaataaaat agatacacta attttaaaac aaggtaaaaa aatagaatta ttaaaacaac
     2221 gcaaacaagg cttactacaa aaaatgtttg tgtaattctg ataacgtcct attatgttaa
     2281 ttgaaaatag acaaaaataa attgagagca tcccttaccg caaagtgaag gatgctctat
     2341 ttttgttgaa attaatataa gcttcattct gatagatagt cattaataat tgtttgcaaa
     2401 tcgttattaa gtaccgttgt tacagcgtca tcattcataa aatcctcgta gattttatca
     2461 agaatttatt cctcttacag acattcgcga gaagtccgtt ttaattttat tagaagtaat
     2521 tcaggtttga acctacctaa atgaatatat gagttatctt ttatactaca aaatatattc
     2581 agatttcaat aatgacataa aataggcatc tttatattta cctttagtgt agaattgctc
     2641 tttaagtaat ccttctgttt taaatccttg tgactcgtat atatgaatag cttttttgtt
     2701 atctgcatca acatatagat agatcttgtg catatttaaa atattgaatg cataaattat
     2761 cgctttttcg aatgcgaatt ttgcataacc tttaccactg aactcaggtt taataattat
     2821 ttgtatttca caattacgat ggatgtaatt aatttctact aattcaacaa tacctacgac
     2881 ttgattttca tcttcaacaa taaaacgtct ttccgattca tctaataaat gcttatcaaa
     2941 taaatgttga agttccgtta aggattcata aggctcttca aaccaataag acataataga
     3001 atattcatta tttaattcat gaacaaaaag taaatcacta tactctaatg ctcttagttt
     3061 cataatccca ctcccaaaat tttcttatat atttgcatta taaatataaa taacgaataa
     3121 gtcattattc actatgaata aatctatttt aacaattcac tacatactaa ttctcatttt
     3181 cttattattc tctaatatct ctgatttatt actcagtgaa agatgcccta tttttatcag
     3241 tatatagttt ttattttgat agatattgat taataatcgt ctg
//
LOCUS       DAMQWL010000189         3277 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.195, whole genome shotgun sequence.
ACCESSION   DAMQWL010000189 DAMQWL010000000
VERSION     DAMQWL010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3277
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.195"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            232..804
                     /locus_tag="PF788_002628"
     CDS             232..804
                     /locus_tag="PF788_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenyl diphosphate synthase component 1"
                     /protein_id="HDG6304862.1"
                     /translation="METTVSKLERQIEERLKGVSEYESININHRLGKLLDLYDIPDVA
                     KVACLTIDTSMRHLDDITYNHLSKHSILIGDLISAHFYTLLAEINDLSFQNEISKAIV
                     EINELKSSLHHQALNDYEISQAIVKIETLFPYITLSHFGINIDESEIYNYLFEDMSDY
                     YPSYFKKYNQSEVKHYLHDIQKSYLKSRGN"
     gene            807..1532
                     /locus_tag="PF788_002629"
     CDS             807..1532
                     /locus_tag="PF788_002629"
                     /EC_number="2.1.1.163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000774689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="demethylmenaquinone methyltransferase"
                     /protein_id="HDG6304863.1"
                     /translation="MADNKANKEQVHRVFQNISKKYDRLNNIISFEQHKVWRKRVMKD
                     MGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKL
                     VHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLP
                     VFKQMYALYFKFVMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRMFEEAGFINVRV
                     RSFTGGVAAMHLGYKEKDNTKGD"
     gene            1534..2493
                     /locus_tag="PF788_002630"
     CDS             1534..2493
                     /locus_tag="PF788_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002463052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDG6304864.1"
                     /translation="MAKLNMNNEIKKVEQRLEKAIKSKDSVLEQASLHLLSSGGKRVR
                     PAFVILSSQFGKDEQTSEQTYQVAVALELIHMATLVHDDVIDKSDKRRGKLTISKKWD
                     QTTAILTGNFLLALGLEHLMAVKDNRVHQLISESIVDVCRGELFQFQDQFNSQQTIIN
                     YLRRINRKTALLIQISTEVGAITSQSDKETVRKLKMIGHYIGMSFQIIDDVLDFTSTE
                     KKLGKPVGSDLLNGHITLPILLEMRKNPDFKLKIEQLRRDSERKEFEECIQIIRKSDS
                     IDEAKAVSSKYLSKALNLISELPDGHPKSLLLSLTKKMGSRNT"
     gene            2585..3034
                     /gene="ndk"
                     /locus_tag="PF788_002631"
     CDS             2585..3034
                     /gene="ndk"
                     /locus_tag="PF788_002631"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002463054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDG6304865.1"
                     /translation="MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMEL
                     AETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIR
                     GDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE"
BASE COUNT         1219 a          422 c          614 g         1022 t
ORIGIN      
        1 gcgttgaatt tacttaaaag gtaaccatgt ctactatagt attttacgtt atttaaaaag
       61 atgaataatg taaatgaagt aaaggttatt atgagaatta caaaagctac ataaattact
      121 gttagtttaa attgaaattt aaaaatgata agtaatctta atgcttcaaa agattttaat
      181 ttcttacata taatgttaat atgaatagtg ataatatcgt gaggtgtaga catggaaaca
      241 actgttagca aattggaaag acaaatagaa gaaagattaa agggcgtatc agaatatgaa
      301 tccattaata ttaatcatcg gttaggtaag ttacttgatt tatatgatat tccagatgtt
      361 gccaaagtgg catgcctcac aattgacaca tcaatgagac accttgatga cattacatat
      421 aatcatttgt ctaaacattc cattttgatt ggagatttaa ttagtgcaca tttttatacg
      481 ctactagcag aaatcaatga tttatcattt caaaatgaaa ttagtaaagc aattgttgaa
      541 attaatgaat tgaaatcttc attacatcat caagctttaa atgattatga aatttctcaa
      601 gcaatagtaa aaattgaaac acttttccca tatattacgt tatctcattt cggtatcaat
      661 attgatgagt cggaaatata taattattta tttgaagata tgtctgatta ctatccatca
      721 tacttcaaga aatataatca aagtgaagta aagcattact tacacgatat ccaaaaaagt
      781 tatttaaaaa gtagaggtaa ttaagcatgg ctgacaataa agcaaataaa gagcaagtac
      841 atcgcgtttt tcaaaatatt tcaaaaaaat atgatagatt aaataatatt attagttttg
      901 agcagcataa agtatggaga aaacgcgtca tgaaagacat gggtgttaga aaagggacga
      961 aagcattaga tgtttgttgt ggtactggtg attggacaat cgcattaagc aaagctgtag
     1021 gaccaacagg tgaagttact ggtattgact ttagtgagaa tatgttagaa gtaggaaaag
     1081 aaaaaactgc ttcaatggaa aatgttaaac ttgttcatgg tgatgcaatg gaattgccgt
     1141 ttgaagacaa ttcttttgat tatgtaacaa ttgggtttgg attaagaaat gtgccagact
     1201 atttagtcgc gttaaaagaa atgaatagag tacttaaacc aggtggtatg gtggtatgtc
     1261 ttgaaacgag ccaaccaact ttgccagtct ttaaacaaat gtatgcacta tactttaaat
     1321 ttgttatgcc tatttttgga aaattatttg caaaatcaaa agaagaatat gaatggttac
     1381 agcaatctac gtttaatttt cctggaaaag aagagttgaa gcgcatgttt gaagaagcag
     1441 gtttcataaa tgtaagagta cgtagtttta cagggggcgt tgctgcaatg caccttggct
     1501 ataaagaaaa agataatacc aaaggtgatt aacgtggcaa agttaaacat gaacaatgaa
     1561 attaagaaag tggaacaacg acttgaaaag gcaataaaaa gtaaagattc tgtattagaa
     1621 caggcatcat tacacttatt gtcttctggt ggtaaaagag tacgcccagc atttgttatt
     1681 ctgagtagcc aatttggcaa agatgaacaa acgtctgaac aaacgtatca agttgcagtc
     1741 gcattagagt taattcatat ggcaacactt gttcatgatg acgttattga taaaagcgac
     1801 aagcgtcgag gcaagttaac catatcaaag aaatgggatc agacaactgc tattttaact
     1861 gggaattttt tattggcatt aggacttgaa cacttaatgg ccgttaaaga taatcgtgta
     1921 catcaattga tatctgaatc tatcgttgat gtttgtagag gggaactttt ccaatttcaa
     1981 gaccaattta acagtcaaca gacaattatt aattatttac gacgtatcaa tcgcaaaaca
     2041 gcactgttaa ttcaaatatc aactgaagtt ggtgcaatta cttctcaatc tgataaagag
     2101 actgtacgaa aattgaaaat gattggtcat tatataggta tgagcttcca aatcattgat
     2161 gatgtattag acttcacaag taccgaaaag aaattaggta agccggtcgg aagtgatttg
     2221 cttaatggtc atattacgtt accgatttta ttagaaatgc gtaaaaatcc agacttcaaa
     2281 ttgaaaatcg aacagttacg tcgtgatagt gaacgcaaag aatttgaaga atgtatccaa
     2341 atcattagaa aatctgacag catcgatgag gctaaggcag taagttcgaa gtatttaagt
     2401 aaagctttga atttgatttc tgagttacca gatggacatc cgaaatcact acttttaagt
     2461 ttgacgaaaa aaatgggttc aagaaacacg tagtatttat gaaaagtatt gaaagcgctt
     2521 taccaacctg ttaatatata atagtaatat acataaacct attaaacaca gggggataca
     2581 taaagtggaa cgtacatttt taatgattaa accagatgca gtacaaagaa atctaattgg
     2641 tgaagtaatt tcaagaattg aaagaaaagg actaaaactt gtcggtggta aattaatgca
     2701 agtaccaatg gaacttgctg aaacacatta tggtgaacac caaggtaaac cattttataa
     2761 tgatttaatt tcatttatta catcagcacc agtgttcgca atggtagttg aaggtgaaga
     2821 tgcagttaat gtatctagac atattattgg cagcaccaat ccttcagaag cttcaccagg
     2881 atcaattaga ggtgatttag gtttaactgt tggtagaaat atcattcacg gttcagattc
     2941 attagagtct gctgaacgtg aaattaatct atggtttaat gaaaatgaaa ttactagcta
     3001 tgcttcacca cgtgatgcat ggttatatga ataaaatata aactgtaaac ctttacgatt
     3061 tatttataaa ggtagaaagg gttttgttat gtggttagtc attatgatta tacataacaa
     3121 ggcccgtttt ttatgttgta gtaaattact tgaaaaattt tatagttttt tggtaacacg
     3181 tattaaaaag agaggaatat tctttatcaa atgaaactaa acagagagaa ggggttgtta
     3241 aaatgaagaa tattatttcg attattttgg ggatttt
//
LOCUS       DAMQWL010000190         3249 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.196, whole genome shotgun sequence.
ACCESSION   DAMQWL010000190 DAMQWL010000000
VERSION     DAMQWL010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.196"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..250
                     /locus_tag="PF788_002632"
     CDS             <1..250
                     /locus_tag="PF788_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HDG6304866.1"
                     /translation="DADLDVLKSRIAKRNRSFEHQIEDEYLLKLKKDYREYYESLQSN
                     GSNVVLIDTTSIDFLKNEQDYEDILHIILPMIGDITNE"
     gene            243..905
                     /locus_tag="PF788_002633"
     CDS             243..905
                     /locus_tag="PF788_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HDG6304867.1"
                     /translation="MNNYGIPQNAIITIAGTVGVGKSTLTQALADKLNFKTSFENVEH
                     NPYLDKFYSDFERWSFHLQIYFLAERFKEQKRMFEYGGGFVQDRSIYEDVDIFAKMHE
                     EEGTMSKEDFKTYSDLFNAMVMTPYFPKPDVMIYLECNYDEVIDRIIERGREMEINTD
                     PEYWKKLFKRYDDWINSFNACPVVRININEYDIHKDPESLNPMINKIARIIQTYRQVD
                     TR"
     gene            complement(1021..1704)
                     /locus_tag="PF788_002634"
     CDS             complement(1021..1704)
                     /locus_tag="PF788_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDG6304868.1"
                     /translation="MEWILFDKDGTLIEFDRSWEKIGVRFVQSLLETFPVHNKEAALR
                     QLGVIKESIDPKSVMGSGSLQQIIQAFNDVTGQDTTDWSKSTSQKLVDERIPEINWVE
                     GVKEALIDLKAKGYQLGIVTSDTKKGVEQFLAHTNATSLFDLIISTEADAYEKPNPKV
                     LSPLFEQYNVDPQKVAIVGDTANDMKTASNANLGMAIGVLTGIATKEELHEADIILNS
                     AADILEALN"
     gene            complement(1954..3030)
                     /locus_tag="PF788_002635"
     CDS             complement(1954..3030)
                     /locus_tag="PF788_002635"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDG6304869.1"
                     /translation="MSQAVKVERRETLKQKPNTSQLGFGKYFTDYMLSYDYDADKGWH
                     DLKIVPYGPIEISPAAQGVHYGQSVFEGLKAYKRDGEVALFRPEENFKRLNNSLARLE
                     MPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRPFVFATEGALGVGASHQYKLLII
                     LSPSGAYYGGETLKPTKIYVEDEYVRAVRGGVGFAKVAGNYAASLLAQTNANKLGYDQ
                     VLWLDGVEQKYIEEVGSMNIFFVENGKVITPELNGSILPGITRKSIIELAKNLGYEVE
                     ERRVSIDELFESYDKGELTEVFGSGTAAVISPVGTLRYEDREIVINNNETGEITQKLY
                     DVYTGIQNGTLEDKNGWRVVVPKY"
BASE COUNT         1073 a          584 c          448 g         1144 t
ORIGIN      
        1 agatgcagac cttgatgtgt taaaatctag aattgctaaa cgtaaccgta gttttgagca
       61 tcaaatagaa gatgaatatc tgttaaagtt aaaaaaagat tatcgtgagt attatgagtc
      121 cttacaaagt aatggttcaa atgtagtttt aatcgataca acttctattg attttcttaa
      181 aaatgaacaa gattacgaag atatattaca tattatatta cctatgatag gagatattac
      241 caatgaataa ttacggtatt ccacaaaatg ccattataac cattgcaggt acagttggtg
      301 ttggaaaatc aacactaacg caagcacttg cagataaatt aaactttaaa acgtcttttg
      361 aaaatgtcga acataatcca tatttagata aattttacag cgattttgaa cgatggagtt
      421 tccatttgca aatttacttc ttagctgaac gttttaaaga acaaaagcgt atgtttgaat
      481 atggtggtgg ctttgtccaa gatcgatcaa tttatgaaga tgttgatatt tttgcaaaaa
      541 tgcatgaaga agaaggcaca atgagtaaag aagatttcaa aacatattca gacttattta
      601 atgccatggt catgacacct tattttccta aacctgatgt aatgatttat ttagaatgta
      661 actatgatga ggtcattgat cgtattattg aacgtggtcg cgaaatggaa attaatacag
      721 accctgaata ctggaaaaag ctatttaaac gctatgacga ttggattaat agctttaatg
      781 catgtccagt tgtacgtatc aatattaatg aatatgatat ccataaggac cccgaatctt
      841 taaatcctat gataaacaaa attgctcgaa ttattcaaac atatcgacaa gtagatacac
      901 gataaaagac taaagacata gcgtatatgt ttatattcaa tgtatattcc atagatatta
      961 tcgattattt tatcaattct atcgaataca ttaattcaca tatacactat gtctttcttt
     1021 ttaatttaaa gcttctaaaa tatctgccgc actatttaaa ataatatcag cttcatgtaa
     1081 ttcttctttt gttgcaatac ctgttaatac acctattgcc atacctaaat ttgcattact
     1141 tgctgtcttc atatcattag cagtgtctcc tactatagct actttctgag gatctacatt
     1201 atattgctca aataaaggcg ataatacttt aggatttggc ttctcatagg catccgcttc
     1261 ggtagaaatg atcaaatcga acaacgaggt agcattggta tgtgctaaaa attgttctac
     1321 acctttttta gtatcactcg taacaatacc aagttgatag ccttttgctt tcaaatcgat
     1381 aagtgcttct ttaacacctt ctacccaatt aatttcagga atacgttcat ctaccagctt
     1441 ttgacttgtt gacttggacc agtcggttgt atcttgtccc gtcacatcat taaatgcctg
     1501 gataatttgt tgtaaagatc ctgaacccat cactgatttt ggatcaatag attctttaat
     1561 gacaccgagt tgtcttaaag cagcttcttt attatgtact gggaaagtct caagcaatga
     1621 ttgtacaaat cgtaccccta ttttttccca acttctatca aattcaatta acgtaccatc
     1681 tttatcaaat aatatccatt ccattgatat caatactcct atttatttat ttcgtattat
     1741 gctgattcta tgatattcgt tatcccctga aaatgaactc gtagtattgt tctatttaaa
     1801 tattgaatta aatataataa taagtgaaat ccccttcaat acttaacaat aaacattgta
     1861 aacttaattt attaccatgc ttcgcttcat tgaaagggat tttagtcatg attaactttt
     1921 gcatattgtt ttcatgatta tattcaattt ttattaatat tttggtacaa cgactctcca
     1981 accattttta tcttctaaag taccattttg aataccagta tagacgtcgt ataatttttg
     2041 agtaatttca ccagtctcat tattattaat aacgatttca cgatcttcgt atctcaatgt
     2101 acccacaggt gaaataactg ctgcagtacc actaccaaat acttctgtta actcaccttt
     2161 atcatatgat tcgaataatt catcgattga aacgcggcgc tcttcgactt catatcctaa
     2221 gtttttagct aattcgataa tagatttacg tgtaatacca ggtaaaatac tgccattcaa
     2281 ctctggtgta attactttgc cattttcaac gaagaaaatg ttcatgctac caacttcttc
     2341 gatatatttc tgttcaacac catcaagcca taatacttgg tcataaccta atttatttgc
     2401 attagtttgt gctaataaac ttgccgcata gttacctgca acttttgcaa agcctacacc
     2461 gccacgaaca gcacgcacat attcatcttc tacatagatt ttagttggtt ttaaagtttc
     2521 accaccataa tatgcacctg aaggagataa aataattaat aatttatact gatgtgatgc
     2581 accaacgcca agtgcccctt ctgttgcaaa aacaaatgga cgaatatata atgattgacc
     2641 ttccccttca ggaatccaat ctctttcaat atcaactaat tgttttagcc cctctaacaa
     2701 ttctgcttcg tctacttgag gcatttctaa tcgtgctaac gagttattaa gacgcttaaa
     2761 attttcttca ggacggaaaa gtgcaacttc cccatctctt ttatatgctt ttaatccttc
     2821 gaataccgat tgaccataat gaacaccttg tgcagcaggt gaaatttcaa taggaccata
     2881 aggtactatc ttcaaatcat gccatccttt atctgcatca taatcataac tcaacatata
     2941 atcagtaaaa tatttaccaa aacctagttg agatgtattt ggtttttgtt ttaatgtttc
     3001 tcgtcgttca actttaactg cttgtgacat ggtgattgcc tcctaataat attgtataag
     3061 aatttgttta acttaaatta taacaatcca tattttgctg ttcaacaaat tttctaaaaa
     3121 ttcaaaatta attaacagat ttctagaaag actatatctt ttagtataaa cgtattaatt
     3181 tcacagagac aagtaatctg tgttttacta atatacttta catacaaaaa actctttact
     3241 ttaaaatga
//
LOCUS       DAMQWL010000191         3237 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.197, whole genome shotgun sequence.
ACCESSION   DAMQWL010000191 DAMQWL010000000
VERSION     DAMQWL010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3237
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.197"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..2075
                     /locus_tag="PF788_002636"
     CDS             <1..2075
                     /locus_tag="PF788_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDG6304870.1"
                     /translation="LKRLKEKSNDEIVQNTINKRINFIFGVIIFIFAVLVLRLGYLQI
                     AQGSHYKQIIKNDENITVNESVPRGRILDRNGKVLVDNASKMAITYTRGRKTTQSEML
                     DTAEKLSKLIKMDTKKITERDKKDFWIQLHPKKAKAMMTKEQAMLADGSIKQDQYDKQ
                     LLSKIGKSQLDELSSKDLQVLAIFREMNAGTVLDPQMIKNEDVSEKEYAAVSQQLSKL
                     PGVNTSMDWDRKYPYGDTLRGIFGDVSTPAEGIPKELTEHYLSKGYSRNDRVGKSYLE
                     YQYEDVLRGKKKEMKYTTDKSGKVTSSEVLNPGARGQDLKLTIDIDLQKEVEALLDKQ
                     IKKLRSQGAKDMDNAMMVVQNPKNGDILALAGKQINKSGKMTDYDIGTFTSQFAVGSS
                     VKGGTLLAGYQNKAIKVGETMVDEPLHFQGGLTKRSYFNKNGHVTINDKQALMHSSNV
                     YMFKTALKLAGDPYYSGMALPSDISSPAQKLRRGLNQVGLGVKTGIDLPNETRGQIEP
                     LTNNPGNYLDLSIGQYDTYTPLQLSQYVSTIANDGYRIQPHIGLTIHESTNKDEVGPL
                     KKKINGTVLNKVNNTEKEIKQIQEGFKMAFNDKDGTGYVSFKDTVVPTAGKTGTAEVF
                     QNGEPRVNSTYIGYAPIDDPKLAFSIVYTNQPVPPPWLTGGDLGRDVINYYFKQLGKN
                     DKNKDKDK"
     gene            2188..2337
                     /gene="rpmG"
                     /locus_tag="PF788_002637"
     CDS             2188..2337
                     /gene="rpmG"
                     /locus_tag="PF788_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDG6304871.1"
                     /translation="MRVNVTLACTECGDRNYITTKNKRNNPERVEMKKFCSRENKQTL
                     HRETK"
     gene            2546..3085
                     /locus_tag="PF788_002638"
     CDS             2546..3085
                     /locus_tag="PF788_002638"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDG6304872.1"
                     /translation="MTKNEIRKYILHKMKNFNKAEKRKADTWLRNQFFATEEYKEANA
                     IALVLSFNHEVDTFSIIEQALMDHKRIFVPKMDYLNHQMTFKEIFNLKDIDVDNKGIY
                     YPTSKGETTNNLDLIVVPGVGFQDDGYRIGYGGGYYDRFLANYQTKTISLLYDFQITS
                     FEPESFDQPVDKLIIYQAA"
     gene            3097..>3237
                     /locus_tag="PF788_002639"
     CDS             3097..>3237
                     /locus_tag="PF788_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001652331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HDG6304873.1"
                     /translation="MNIDKQFWKTIYYWIRYLNFDIVSREKDDQEIWLAHKRKKQVVI
                     FKQ"
BASE COUNT         1287 a          440 c          590 g          920 t
ORIGIN      
        1 tgttaaaaag actaaaagaa aaatcaaatg atgaaatcgt tcaaaataca attaacaaga
       61 gaattaactt tatatttggt gtgattatat ttatttttgc agtactagta ctacgtttag
      121 gttatttaca aatcgcacaa ggctcacatt ataaacaaat tataaaaaat gatgaaaaca
      181 ttacagtgaa tgagtctgtg ccaagaggtc gtattttaga cagaaatggg aaagttttag
      241 ttgataatgc ttctaaaatg gctattacat atactagggg tcgaaaaaca acacaatcgg
      301 aaatgttgga tacggctgaa aagttatcaa agctaatcaa gatggatact aagaaaatta
      361 cagaacgtga taagaaagat ttctggattc agttgcatcc taaaaaagca aaagcaatga
      421 tgacaaaaga acaagctatg ttagcagatg gaagtattaa acaagatcaa tatgataaac
      481 aactgttatc gaaaatcgga aaatcacaat tagatgaatt gtcttctaaa gatttacaag
      541 ttttagctat ttttcgagag atgaatgcag gaacagtttt agatccacaa atgataaaaa
      601 atgaagatgt cagtgaaaaa gagtatgcag cagtttctca gcaactttcc aaattaccag
      661 gtgttaacac gtctatggat tgggatagaa aatatccata tggcgatact ttaagaggta
      721 tattcggaga tgtatcgaca cctgctgaag gtattccaaa agaattgaca gaacattact
      781 tatccaaagg atattcacgc aatgatcgtg ttggaaaatc ttacctagaa tatcaatatg
      841 aagatgtatt gcgtggtaag aagaaagaaa tgaaatacac aacggacaaa tctggtaaag
      901 ttacatcttc agaagtgtta aatcctggcg ctcgcggtca agatttgaaa ttaacgatcg
      961 atatagatct tcaaaaagaa gtagaagcat tattagataa acaaattaag aagcttcgca
     1021 gtcaaggtgc caaagatatg gataatgcaa tgatggttgt acaaaatcct aaaaatggag
     1081 acattcttgc gcttgccgga aagcagatta ataagagtgg taaaatgact gattatgaca
     1141 ttggtacgtt tacttctcaa tttgcggttg gatcttctgt aaaaggtgga acattattag
     1201 ccggttatca gaataaagct atcaaagttg gagaaacaat ggtcgatgaa ccattacatt
     1261 tccaaggtgg tttgacaaaa cgatcatact tcaataaaaa cgggcatgta actattaatg
     1321 ataagcaagc tttgatgcat tcatcaaacg tatatatgtt taaaacagca ttaaaattag
     1381 cgggagaccc ttattattct ggtatggctt taccttcaga cataagttca cctgcccaaa
     1441 agctaagaag aggattaaat caagtaggct taggtgtgaa aacagggata gatttaccaa
     1501 atgaaacaag aggtcaaatc gaaccattaa caaataatcc aggtaattat ctagatttat
     1561 caattggtca atatgatacc tatacaccat tacaattatc acaatatgtt tcaactatag
     1621 cgaatgatgg ttatagaata cagccacaca ttggattaac gattcatgaa tcaactaata
     1681 aagatgaggt tggtccactc aagaagaaaa ttaatggcac tgtcttgaac aaggttaata
     1741 atactgaaaa ggaaatcaaa caaattcaag aaggattcaa aatggcattt aatgataaag
     1801 atggtactgg atatgttagt tttaaagata cagtagtacc tactgctggt aaaacgggta
     1861 ccgcagaagt gttccaaaac ggagagccaa gagttaactc tacttatata ggatacgcgc
     1921 caattgatga tccaaaatta gcgttttcaa ttgtatatac aaatcagcct gtaccaccac
     1981 catggttaac aggtggagac ttaggtagag atgtaattaa ctactacttt aagcagttag
     2041 gtaaaaatga taaaaataaa gacaaagaca aataaaattt aacctgacga ttgtgtagcg
     2101 catggttgta aaattttaac tttgcaaata ttatagatgt tggtataata ataaagtcgt
     2161 atttagaaat gataaggagg aataaccatg cgcgtaaacg taactttagc ttgtacggaa
     2221 tgtggtgaca gaaactacat tacaactaag aacaaaagaa ataatccaga acgtgttgaa
     2281 atgaagaaat tctgttcacg tgaaaacaaa caaactttac accgtgaaac aaaataatca
     2341 ttaaaattaa atttaaatta acaataaaaa aggtgaaatc tcaaaataag aggtttcacc
     2401 tttttaatta tgcacacgta tgaaatgata aaagattttc aattgaaata ataaatttta
     2461 gaattgtcgc ataattcatc atgacaacat aatgacatgt attgttatta acgatataat
     2521 agaattgaat aaagtgggtg ataatgtgac taaaaatgag attagaaaat acattttaca
     2581 taaaatgaag aattttaata aagctgaaaa gcgaaaagca gacacatggt taagaaatca
     2641 attttttgca actgaagaat acaaagaagc aaacgcaatt gcgctagttc tttcttttaa
     2701 tcatgaagta gatacttttt ctattattga acaagcctta atggatcata aacgtatttt
     2761 tgtaccgaaa atggattatt taaatcatca aatgactttt aaagagatat ttaatctcaa
     2821 agatattgat gtcgataata aggggattta ctatccaact tcaaaaggtg aaacaacgaa
     2881 taacctagat ttaattgttg ttcctggtgt tggatttcaa gacgatggat atagaattgg
     2941 gtatggtggt ggctattacg acaggttttt agctaattat cagacaaaga caataagctt
     3001 attatacgat tttcaaataa catcatttga accggaatca ttcgatcaac cagtcgataa
     3061 attgattata tatcaagcag catagtggag gactaaatga acatagacaa acaattttgg
     3121 aaaacaatat attattggat taggtacttg aattttgata ttgtcagtag ggaaaaagat
     3181 gaccaagaaa tttggttagc ccataaaaga aaaaaacaag tagtcatttt taaacaa
//
LOCUS       DAMQWL010000192         3203 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.199, whole genome shotgun sequence.
ACCESSION   DAMQWL010000192 DAMQWL010000000
VERSION     DAMQWL010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.199"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            140..775
                     /locus_tag="PF788_002640"
                     /pseudo
     CDS             140..775
                     /locus_tag="PF788_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491779.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase"
     gene            772..1302
                     /gene="sat4"
                     /locus_tag="PF788_002641"
     CDS             772..1302
                     /gene="sat4"
                     /locus_tag="PF788_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="streptothricin N-acetyltransferase Sat4"
                     /protein_id="HDG6304874.1"
                     /translation="MITEMKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEA
                     PYLKSYQDEEDEEDEEADCLEYIDNTDKIIYLYYQDDKCVGKVKLRKNWNRYAYIEDI
                     AVCKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDT
                     MLYANFEKAVFWYLRF"
     gene            1395..2189
                     /locus_tag="PF788_002642"
                     /note="aph(3')-IIIa"
     CDS             1395..2189
                     /locus_tag="PF788_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase
                     APH(3')-IIIa"
                     /protein_id="HDG6304875.1"
                     /translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLK
                     MTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEY
                     EDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
                     EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKW
                     YDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
     gene            2465..3036
                     /locus_tag="PF788_002643"
                     /pseudo
     CDS             2465..3036
                     /locus_tag="PF788_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079940.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
BASE COUNT         1075 a          504 c          729 g          895 t
ORIGIN      
        1 cgaacactga catgatatat tagtgattag ctatattttt tactttgcaa cagaaccatc
       61 atttttatta aaatactctt ttgtaaaatc tttctgctct tcaatgtatt taatttcttt
      121 acctctaaat ctattatagc tatttgatga ttacaataaa attgatctta ccttattgcc
      181 cttggaagag ttagataatt acctaaaggg cgataaatta ataaaggttc taattgataa
      241 agattgtaga attaaaaggg acatagttcc gactgatata gattatcatg taagaaagcc
      301 aagcgcaagg gagtatgatg attgctgcaa tgaattttgg aatgtaacac cttatgttat
      361 taaaggattg tgccgtaagg aaattttatt tgctattgat cattttaatc agattgttcg
      421 ccatgagctg ctgagaatga tatcatggaa ggtcggcatc gaaacaggct ttaaatgaag
      481 tgtaggcaag aactataagt ttattgaaag gtatatatcc gaggatttgt gggagaaact
      541 tttgtccacc taccggatgg attcctatga aaacatatgg gaagcattat ttctatgcca
      601 tcaattgttc agggcggtat ccggtgaggt ggcggaaagg cttcattatg cctatccgga
      661 gtatgatagg aatataacaa aatataccag ggacatgtat aaaaaataca ctggtaaaac
      721 cggctgcctg gatagcacat atgccgctga tatagaagag aggcgggaac agtgattaca
      781 gaaatgaaag cagggcacct gaaagatatc gataaaccca gcgaaccatt tgaggtgata
      841 ggtaagatta taccgaggta tgaaaacgag aattggacct ttacagaatt actctatgaa
      901 gcgccatatt taaaaagcta ccaagacgaa gaggatgaag aggatgagga ggcagattgc
      961 cttgaatata ttgacaatac tgataagata atatatcttt actaccaaga cgataaatgc
     1021 gtcggaaaag ttaaactgcg aaaaaattgg aaccggtacg cttatataga agatatcgcc
     1081 gtatgtaagg atttcagggg gcaaggcata ggcagcgcgc ttatcaatat atctatagaa
     1141 tgggcaaagc ataaaaactt gcatggacta atgcttgaaa cccaggacaa taaccttata
     1201 gcttgtaaat tctatcataa ttgtggtttc aaaatcggct ccgtcgatac tatgttatac
     1261 gccaactttg aaaaagctgt tttctggtat ttaaggtttt agaatgcaag gaacagtgaa
     1321 ttggagttcg tcttgttata attagcttct tggggtatct ttaaatactg tagaaaagag
     1381 gaaggaaata ataaatggct aaaatgagaa tatcaccgga attgaaaaaa ctgatcgaaa
     1441 aataccgctg cgtaaaagat acggaaggaa tgtctcctgc taaggtatat aagctggtgg
     1501 gagaaaatga aaacctatat ttaaaaatga cggacagccg gtataaaggg accacctatg
     1561 atgtggaacg ggaaaaggac atgatgctat ggctggaagg aaagctgcct gttccaaagg
     1621 tcctgcactt tgaacggcat gatggctgga gcaatctgct catgagtgag gccgatggcg
     1681 tcctttgctc ggaagagtat gaagatgaac aaagccctga aaagattatc gagctgtatg
     1741 cggagtgcat caggctcttt cactccatcg acatatcgga ttgtccctat acgaatagct
     1801 tagacagccg cttagccgaa ttggattact tactgaataa cgatctggcc gatgtggatt
     1861 gcgaaaactg ggaagaagac actccattta aagatccgcg cgagctgtat gattttttaa
     1921 agacggaaaa gcccgaagag gaacttgtct tttcccacgg cgacctggga gacagcaaca
     1981 tctttgtgaa agatggcaaa gtaagtggct ttattgatct tgggagaagc ggcagggcgg
     2041 acaagtggta tgacattgcc ttctgcgtcc ggtcgatcag ggaggatatc ggggaagaac
     2101 agtatgtcga gctatttttt gacttactgg ggatcaagcc tgattgggag aaaataaaat
     2161 attatatttt actggatgaa ttgttttagt acctagattt agatgtctaa aaagctttaa
     2221 ctacaagctt tttagacatc taatcttttc tgaagtacat ccgcaactgt ccatactctg
     2281 atgttttata tcttttctaa aagttcgcta gatagagttc tatattagag atgtaaagag
     2341 ttttggtgaa gaggtttgtg agtatggctt ttataaccag ggtgcaatga gaagcactaa
     2401 cagcagctag cttaagaacg cataggatat actttttatg gaagtcacag aggaggaata
     2461 aaatttgaac aggattaaca gagtaacctc tattcttatt cagctgcaat caaaaaaata
     2521 attcctgcca aagaaattgc acagcgattt aatataagct taaggacagt ttacagagat
     2581 atccggacac ttgaagaagc cggaatacca attggatctg aggccggaaa aggatatttt
     2641 cttgtagagg gcttcctact tctgccggta atgtttacag cggcggaagt gggtgcattg
     2701 attacagcag ggaaattttt aaattgccat ggagatgaat catttataaa ggattttgat
     2761 tcagctatgt ataaaatcaa atctattttg aagcatggtg aaaaaaacta tgcacaggag
     2821 ttggagaaca gtattaacgt gtacagcaca tctggacaga aaaatacatt ggcggataac
     2881 gttattgcag caattcagac tgcaatctgc aataaaaggg taatatcaat tcaatatcct
     2941 gcatcaggag ggcaagaacc ggaaagcaga atgatagagc ctatatcact ggggttttat
     3001 gaacagaact ggtacttaat cggttttgca ggctaagaaa tgaatatagg aattttcgtg
     3061 tggatcggat taaaagcatt tgcatagaag aagagctctg tcaaagccat gatggctctt
     3121 tggaacaaat attaaaacaa atgctggttc tgttgcaaag taaaaaaata tagctaacca
     3181 ctaatttatc atgtcagtgt tcg
//
LOCUS       DAMQWL010000193         3131 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.200, whole genome shotgun sequence.
ACCESSION   DAMQWL010000193 DAMQWL010000000
VERSION     DAMQWL010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.200"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            250..1047
                     /locus_tag="PF788_002644"
     CDS             250..1047
                     /locus_tag="PF788_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDG6304876.1"
                     /translation="MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKY
                     NTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNTSNTSPQAGSASSHTVQAGESLNII
                     ASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNL
                     YTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGP
                     YGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH"
     gene            complement(1635..2642)
                     /locus_tag="PF788_002645"
     CDS             complement(1635..2642)
                     /locus_tag="PF788_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDG6304877.1"
                     /translation="MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKT
                     AILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYG
                     IPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFK
                     VIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVE
                     PQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLH
                     FPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLAGLLFYILNLF
                     F"
     gene            complement(2658..>3131)
                     /locus_tag="PF788_002646"
     CDS             complement(2658..>3131)
                     /locus_tag="PF788_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HDG6304878.1"
                     /translation="ESHGDELVHQVITDLNQTFITPIEREDILSLCDAIDDVLDAIEE
                     TAAMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFET
                     NCDGILRQSIKHIFNSETDPITLIKIKDIYESMEEIADKCQIVANNFETIIMKNS"
BASE COUNT         1096 a          548 c          455 g         1032 t
ORIGIN      
        1 caaaatataa ttttttataa ttagttaaaa tcactaaaac gcttttatac actatcaaat
       61 cagcatttat aaaaatatga accgatatcc taaaatgtta ataatattac aagataataa
      121 caaaccacac aaagctactt atttttgata atatggaaat cgtaatataa aacgaaaact
      181 taatttacta tataaattgt cttaataatt tttaaaagta gtaaaacata attttaagga
      241 ggagtccctt tgaaaaaatt agcatttgca ataacagcaa catctggtgc agctgcattt
      301 ttaacgcatc atgatgcaca agcttctaca caacatacag tacaatctgg tgaatcatta
      361 tggagtattg ctcaaaaata caacacttca gtagagagta ttaaacaaaa taaccaatta
      421 gataacaact tggtattccc tggtcaagtt atctcagtag gtggaagtga tgcacaaaat
      481 acgtcaaaca cttctccaca agctggttca gcatcatctc atactgtaca agctggtgaa
      541 tcattaaata tcattgctag cagatatggt gtttcagttg atcaattaat ggcagccaat
      601 aacttacgtg gttatttaat tatgcctaac caaacattac aaattcctaa tggtggatca
      661 ggtggtacaa caccaacagc tacaacaggt agcaatggca atgcatcatc ttttaatcac
      721 caaaatttat acactgctgg tcaatgtaca tggtacgtat ttgaccgtcg tgctcaagct
      781 ggtagtccaa ttagcacata ttggtcagac gctaagtatt gggctggtaa cgcagctaat
      841 gatggttacc aagtaaacaa cacaccatca gttggttcaa ttatgcaaag cacacctggt
      901 ccatatggtc atgttgctta tgttgaacgt gtcaatggtg atggtagtat cttgatttct
      961 gaaatgaatt acacatatgg tccatacaat atgaactacc gtacaattcc agcttcagaa
     1021 gtttctagct atgcattcat ccattaatta aataaattgt actgatatat actagcaatt
     1081 cacatcatgt gagattgcta gttttttatt tttgaaaaaa attttcattt tggtacaaaa
     1141 aattatctca cccttcccta tcatacatat ttatattttg tatgaatggt agttaggtaa
     1201 aaattaacaa cctacctatt tgattaaatt aaatgcataa tatattaaaa atcaaaataa
     1261 tgcaactaag ttgactatat aatgatttaa tttgttatac cagtatttta cgctttttcg
     1321 tctacatata caaatttata ttaaataaag cccaatacaa tttaggttaa ttaaacaagt
     1381 tgataactat ttaattattc cttcattgaa gaatataaac tattaaatca ttattttgct
     1441 cttacatata ttttaatgac ctaactgatt atgttccatg gaatacattt ataatatagc
     1501 ctcctaatta aaatgctttg tcttggtcat tctacgtaaa ttctataaaa tatgttatct
     1561 acttacataa aaaactgaac ttcaatacca ccatatgttt gtgatactga agttcagttt
     1621 agttttattt tcaattagaa aaataagtta agtatataga atagtaaacc tgctaacaat
     1681 gctgaaatag gtaatgtaat cacccatgta atgatcattc gttgcgcagt gctccatttt
     1741 acacctttag ctcggttaga agcaccaaca cctaagattg atgatgacac aacgtgagtt
     1801 gttgataatg ggaaatgtag cgatgatgca acaaaaattg ttaatgcaga tgataaatcg
     1861 gccgcagcac catttgctgg acgtattttc ataatattac cacctacagt tttgataatt
     1921 ttccagccac caattgcagt accaagcccc attgctgtcg cacaggcaaa ttttacccat
     1981 aactgtggtt caacactgcc atcattctgt acattagcga caatcaatgc caacgtaata
     2041 atacccattg atttttgcgc atcattcgta ccgtgagaga atgattgtaa cgctgctgtg
     2101 aaaatttgga aaaatctaaa gttacgattc gctcttgtta aatttgcatt tttaaagata
     2161 actttaaaaa ttgaatacat caagaaacca acacaaaatg cgataatcgg tgaaacgatt
     2221 aatacaataa taatttttgt gaaaccttgg taatgtaaca ctccaaatga gccttcagat
     2281 gcgattgctg cacccgcaat tgaacctata agtgcatgtg aagacgaact tggaattccg
     2341 taaaaccaag tagctaaatt ccaaataata gccgcaagta ttgcagctaa cacaacaact
     2401 aatccatttt ccaatttaaa tggatcgaca atgtctttag taatggtgcc tgcaacgccc
     2461 gtaaatgtta aagcacctat aaagttcatc actgctgcca ttaaaattgc cgttttaggc
     2521 gttaacgctc tagtagatac agcagtagct actgcattgg ctgtatcatg gaatccattg
     2581 ataaagtcaa atatcagcga gaaaataact acagctatag tgacgatgat tatatatgac
     2641 ataaatatat actcccctta gctatttttc ataataatag tttcaaaatt atttgctacg
     2701 atttgacatt tatcagcgat ttcttccatg ctttcataaa tatcttttat tttaattaaa
     2761 gtgattggat ctgtttcgct attgaaaata tgtttaattg actgtcttaa aataccatca
     2821 cagtttgttt caaattcttt aatattaatt gaatgaatac gcatatgtga taatttttta
     2881 tcgactaata agccgacagc aagtttcatt tctgcaactg ctttttgaat gttatcaaca
     2941 aactcagcca tatattcatc tgtgtattcg attgaataca tttcaaacat agctgccgtt
     3001 tcttcaattg catctaaaac atcatcaatt gcatcacata atgataaaat atcttcacgt
     3061 tcaattggtg tgataaatgt ttgatttaaa tcagtaatta cttgatgtac taattcgtca
     3121 ccatgtgact c
//
LOCUS       DAMQWL010000194         3125 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.201, whole genome shotgun sequence.
ACCESSION   DAMQWL010000194 DAMQWL010000000
VERSION     DAMQWL010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.201"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(55..243)
                     /locus_tag="PF788_002647"
     CDS             complement(55..243)
                     /locus_tag="PF788_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304879.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILM
                     GINAIYLVVKVMNFKKNN"
     gene            complement(826..1821)
                     /locus_tag="PF788_002648"
     CDS             complement(826..1821)
                     /locus_tag="PF788_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="HDG6304880.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADIL
                     EILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQK
                     VIEKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFM
                     RSTEVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVAN
                     VKAIKPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSY
                     GGLLKQKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
     gene            2273..2854
                     /locus_tag="PF788_002649"
     CDS             2273..2854
                     /locus_tag="PF788_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304881.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIA
                     DKNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDI
                     ENKKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVA
                     KKLAKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
BASE COUNT         1139 a          519 c          379 g         1088 t
ORIGIN      
        1 aaaaaaacag tgtgaaaaca agaagaaact cgtttcaaaa tcccctcaaa tattctaatt
       61 attctttttg aaattcataa ccttaacaac caaataaata gcatttattc ccatcaaaat
      121 aacatacgga attaatatat ataaattttc caaatgagat ataaaaatta atccaagtaa
      181 aaagaaaaca tttaaaatag ttgctataac gtaaccttca tctaacactg tgtttttatt
      241 caaaataaac actccttttt taaaaaactt tatcacaaga cttactcaaa ttataaatac
      301 ctttattttg agttttaagg gggtatttta aaggtttagg gggtatcata taggttttta
      361 acttaaaaat atatacaagc tcttaaaacg caaatatgag ccaaataaat atatggtaat
      421 ttcacaaaca aaaatttcag caaaaccagt gactaatttt ttaacactgc ccatttacat
      481 gcaaattaaa aattagcata aaatccttta aaacttccac atgtttttct aaattcctgc
      541 agggcgtttt ttatcaaaaa tcgagaattt ttaatttttc tctaaaaact ccgtaagagc
      601 ataaggagaa tttgctatca ttcaaaaatg ataggtctgg caaagccaga aattccaggg
      661 gttttaaggt attttaaagt gatatcatac aaagctgtac tgtcttattt ttgtgacaca
      721 atatattgcg tttgtcttat ttttgtgaca ctacatacag catttgtcac aaaaataaga
      781 cagtactttt ttataaaaaa tcaacaaaaa agacattagt caacactaat gtcttaaata
      841 ataattttgc ttttcgaaat tccaaattgc ggtaattgaa tgtgcttttt cttcttcgtc
      901 tgttgtttta tcttcatcac ttgcattaat caaattacca tcttcgacat cgtctaagtt
      961 taaaatttta tgtttttgtt taagcaatcc accataactt aacatacgtt ttcgatacaa
     1021 acctttttct aaatcactta caatttcttg atttttttca tcatcatcag ttaaaaaatc
     1081 agatgattta accgaatatt ttgaggtctc tttgattgcc gattcaatgt ctttatcgcc
     1141 ttttctattc ggtttgatcg ctttaacatt agcaacaggt cgatagtcaa cttgtaatgc
     1201 tctttgccat aaattaaccc attcttcttg agttatataa ttctcttttt ttctaaaata
     1261 tgcattttca acacataaca aaacatgcat gtgctgatta taactaccgt catttttatt
     1321 aacggtaact tctgttgaac gcataaatcc aacaagattt tgtttaacct ttttatatct
     1381 actcaaccta tcaaatgctt tagttagatg cttcaaactt tgttctaaag tatctccatc
     1441 tatcgcattt tttgttgaaa gtgttaaaaa caaccaacgt gcttttggct tttccttaat
     1501 tactttttca atcacttttt gagcttgata actatttttc atagcacgtc tccaattaca
     1561 aaccggacat aattttgatt tacaaaacca tgtcttatgt aacttcaaat agccttcatc
     1621 agttggctta aattctaaaa tattaccaca ttgttttaca ttaaaagcct ttttgatttt
     1681 taaaatttct agtatatctg catagcttac attatctatt ttcttttctc tccatgggcg
     1741 ttgtttccca cttttcgtca tatcttttaa cgttttatta tcttgatttt cggttatact
     1801 tctagtagta ttatattgca tataaaaaga cccccagtat tatttaagat tcgacacctt
     1861 aataatataa ctggggtttt ttattgtcaa attttccttt cacgcacaaa aacacgttta
     1921 aacactgtaa tatcaacagt tacagctata tatataaaat cgagttattt ctatatagta
     1981 tcaagacaag aagaaactcg ttcacactcg tttcaaaaaa caacctattc cttcttcttt
     2041 ttatgaccct ctaaacctaa ataaattaat gtgaaaacca atgaataaat aaaactttct
     2101 aaaaagtcaa aaggattatc aaataaaatc gaattaacaa aattaaaaat taaaaataca
     2161 gataataaaa taatcaaaaa gtaaaaaaac ttattcatat taaactcctt tgtttttata
     2221 tgttaatatt atattgaatt catttaaata acaaaacaag ggggcattta caatgaatgc
     2281 aattcaaaac agtatatcac taagaaagat tttagtagta tctttaagta ttttaaccat
     2341 actttcaatg gtcttggatt ttaatttcaa agaagctcaa gcccaaaaca aaaataacat
     2401 tgcagataaa aacgttgaaa ctttaaacga aaaagaaatt gaaaaagaac taaaatacat
     2461 atatggcaaa attattattt tagataaaga cggaacagct aaagatgtta atctagaaaa
     2521 tgccaaatct cgatatggat atgttcctga aggattccaa aaactaaaaa acgacataga
     2581 gaataaaaag aaaactagtt caatatcacc tagagcagtt ggtgggaact acaaaaatag
     2641 cggtgactgt ttctattctg aagttttaaa ctcatatgga gaacttttaa ctggaaacat
     2701 aatcacagca gtttttgaag atgttaaagc caaaaactta aagggcgtag caaaaaaatt
     2761 agctaaaatt gggataaaag gaaacctagc tggaatcgca gctactatgg tttcgaagga
     2821 tgtacaatgt aatcttaaat acgggttact ttagatacta tttattccaa ttgctttatt
     2881 gacgttgagc ctcggaaccc ttaacaatcc caaaacttgt cgaatggtcg gcttaatagc
     2941 tcacgctatg ccgacattcg tctgcaagtt tagttaaggg ttcttctcaa catcaataaa
     3001 ttttctcggc ataaatgcgt cgtctatttt ttattatctt catgataatc atatttttct
     3061 tccatctcgt caaaagcatc atctttatag aaaaacaaaa agtaagcaac aacaccaata
     3121 ggaat
//
LOCUS       DAMQWL010000195         3083 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.202, whole genome shotgun sequence.
ACCESSION   DAMQWL010000195 DAMQWL010000000
VERSION     DAMQWL010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.202"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..521)
                     /locus_tag="PF788_002650"
     CDS             complement(<1..521)
                     /locus_tag="PF788_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HDG6304882.1"
                     /translation="MKKYDIAVLDFETMNEHMNSPCEVAVSLIKDLSIVKVYSSYINP
                     PNNRYNLKNAKIHKIPEDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNT
                     NNYYDLPVPNFMYVDSINIFRSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKM
                     LISLAKNNQHYSV"
     gene            complement(537..1250)
                     /locus_tag="PF788_002651"
     CDS             complement(537..1250)
                     /locus_tag="PF788_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304883.1"
                     /translation="MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNL
                     RSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEE
                     QNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
                     NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDY
                     DDLHFYRNESVRLIGKVIL"
     gene            1213..1386
                     /locus_tag="PF788_002652"
     CDS             1213..1386
                     /locus_tag="PF788_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDG6304884.1"
                     /translation="MFLAIIIFLSLFILLTSFFLIIRNFHIIVKFFTKKTYLMLTIRK
                     FRIILGLRKAVTT"
     gene            1383..1646
                     /locus_tag="PF788_002653"
     CDS             1383..1646
                     /locus_tag="PF788_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6304885.1"
                     /translation="MKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLL
                     SKYMSAFNVKYDDIFLGNEYENFVFTNDKKKSIILAFKEKQTS"
     gene            1662..1877
                     /locus_tag="PF788_002654"
     CDS             1662..1877
                     /locus_tag="PF788_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2829 domain-containing protein"
                     /protein_id="HDG6304886.1"
                     /translation="MNIQEATKLAMEKGISIRRENQDVYGILPTNLQRYQCLVVSRHY
                     KKKRQTAAGRWQPSADDLIADDWILDY"
     gene            complement(1866..2195)
                     /locus_tag="PF788_002655"
     CDS             complement(1866..2195)
                     /locus_tag="PF788_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001622080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304887.1"
                     /translation="MTNEAKFVLLQLYSIYLDRIDEGMSKRSASYFGSDESSFNAFFL
                     DFNFEDYIDAVLELKHRDFVIASAEDGGFLEMALSREGIAYSESESKKDYKTLMDLIR
                     DLKKLII"
     gene            2246..2998
                     /locus_tag="PF788_002656"
     CDS             2246..2998
                     /locus_tag="PF788_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001148641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HDG6304888.1"
                     /translation="MQALQTNSNIGEMFNIQEKENGEIAISGRELHQALEVKTAYKDW
                     FPRMLKYGFEENTDYTAIAQKRATAQGNMTHYIDHALTLDTAKEIAMIQRSEPGKRAR
                     QYFIQVEKAWNSPEMIMQRALKIANNTINQLETKIERDKPKIVFADAVATTKTSILVG
                     ELAKIIKQNGVNIGQRRLFEWLRQNGFLIKRKGVDYNMPTQYSMERELFEIKETSITH
                     SDGHTSISKTPKVTGKGQQYFVNKFLGEKQTS"
BASE COUNT         1119 a          476 c          518 g          970 t
ORIGIN      
        1 aatacactat aatgctgatt gtttttagcg agtgatatca acatcttcga taaagctagc
       61 acgtcaaatt tagcagaatg taatttttct ttatcgatat catataagct acacaaattt
      121 tctaatttaa aactagagat tgcgtggaag cttctaaaga tatttatact atcgacatac
      181 atgaagtttg gaacaggtaa gtcataataa ttattagtat tttttaatac tgaaatatca
      241 aaaagtgcat tatgagcaat aattaaatgt gattctttta aaagatagag aatttcttgg
      301 taaatatctg gatatttagg tgcttttaat atgacatctt caggtatttt atgtatttta
      361 gcgtttttca agttatatct attattagga ggattaatat aagatgaata aacttttact
      421 attgataaat ccttaattaa agatacagca acttcgcaag ggctgttcat atgttcattc
      481 atagtttcaa agtctaagac tgcaatatca tattttttca tttgcaagtg ctccttttat
      541 aaaataactt ttccaattaa cctcacactt tcatttctat aaaagtgtag atcgtcgtaa
      601 tctttattta gtgaaactag agtcaatcta tcatcttcaa caaagacttt cttaacgtac
      661 gcttcttctt caatgatgaa tataccaatt tgtccattct ttatattgtg agttttctcc
      721 acaaatatga tttcgccatc tttaaacata ggttccatag aatcaccatt tacttttaac
      781 gctaaatcgt gtgtggggat aggtccttta accatttcag taaatagcgt ttcatcgtgt
      841 aaacgttctc ctacaccagc agagacgcaa ccattgacgt taactggagt tttctcctgt
      901 ttatatgaat taatatctac aacgttatct cctttagaat tctgttcttc caattgttca
      961 tttgcatagt taagtacgtt ttcttggcgg ggaggtgtga gtttgttgta tatggaagtg
     1021 atgtcgttat cgtctttgta tgtagtatct atgtcgcttt taccaacctc gaaaacatca
     1081 gctatccttt gtataacgcc gtgagagggg ttggaacgta aatttaaata atcgcttaaa
     1141 gtagatggtt ttatgttaat gagttcagca agtttctttt gagacatatt tgaatcgttg
     1201 agaaattttc taatgttttt ggctataata atatttcttt ctttgttcat attacttacc
     1261 tccttttttc ttattatacg aaattttcat atcatagtaa agttttttac gaaaaaaacg
     1321 tatttaatgt tgacaatacg aaaatttcgt attatattag gtttacgaaa ggcggtgaca
     1381 acatgaaaac attaaaagag ttgaggactg attacggatt gactcaaaaa gagttaggag
     1441 atttatttaa ggtctcatca cgtacaattc aaaatatgga aaaagactct acaaacatta
     1501 aagatagttt actttctaag tatatgagtg cttttaatgt taaatatgat gatatttttt
     1561 taggtaatga atacgaaaat ttcgtattta cgaatgataa aaagaaatca attattttag
     1621 catttaaaga aaaacaaaca tcttaatagg aggaataaca aatgaacatt caagaagcaa
     1681 cgaagctagc gatggagaaa ggaataagta taaggagaga gaatcaagat gtgtatggga
     1741 tattaccaac taatttgcag cgttatcaat gcctagtcgt atctagacac tataagaaaa
     1801 aaagacaaac cgccgccgga aggtggcagc ctagcgcaga cgatttaata gcagatgatt
     1861 ggattttaga ttattaattt tttcaaatct ctaattaaat ccataagtgt tttgtaatct
     1921 tttttggatt ctgattctga gtaggcgata ccttctcgag aaagagccat ctcaagaaaa
     1981 ccgccatctt cagcagaagc aattacaaaa tctctatgct ttaattcaag aactgcatcg
     2041 atatagtctt caaaattaaa atctaaaaag aaagcgttaa atgaggattc atcactaccg
     2101 aaataagatg cagaacgttt agacatacct tcgtcaattc tatcaaggta aattgaataa
     2161 agttgtaaaa ggacaaattt agcttcatta gtcataagtc attcacctcc ttaataggag
     2221 tatagcagaa aggagcataa acaatatgca agcattacaa acaaattcga acatcggaga
     2281 aatgttcaat attcaagaaa aagaaaatgg agaaatcgca atcagcggtc gagaacttca
     2341 tcaagcatta gaagttaaga cagcatataa agattggttt ccaagaatgc ttaaatacgg
     2401 atttgaagaa aatacagatt acacagctat cgctcaaaaa agagcaacag ctcaaggcaa
     2461 tatgacacac tatattgacc acgcactcac actagacact gcaaaagaaa tcgcaatgat
     2521 tcaacgtagt gaacctggta aacgtgcaag acaatacttc atccaagttg aaaaagcatg
     2581 gaacagccca gaaatgatta tgcaacgtgc tttaaaaatt gctaacaaca caatcaatca
     2641 attagaaaca aagattgaac gtgataaacc aaaaattgta tttgcagatg cagtagctac
     2701 tactaagaca tcaattttag ttggagagtt agcaaagatc attaaacaaa acggtgtaaa
     2761 catcgggcaa cgcagattgt ttgagtggtt acgtcaaaac ggattcctta ttaaacgcaa
     2821 gggtgtggat tataacatgc ctacacagta ttcaatggaa cgtgagttat tcgaaattaa
     2881 agaaacatca atcacacatt cggacggtca cacatcaatt agtaagacgc caaaagtaac
     2941 aggcaaagga caacaatact ttgttaataa gtttttagga gaaaaacaaa catcttaaaa
     3001 ggaggaataa caaatgaacg aagaaaaatt aaagatgatt ctcttacttc ttgaagatat
     3061 accaagagac gaatggaatc gat
//
LOCUS       DAMQWL010000196         2976 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.203, whole genome shotgun sequence.
ACCESSION   DAMQWL010000196 DAMQWL010000000
VERSION     DAMQWL010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.203"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(130..543)
                     /locus_tag="PF788_002657"
     CDS             complement(130..543)
                     /locus_tag="PF788_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304889.1"
                     /translation="MKPTKVILKDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATF
                     EDQEVKFEFALFDSDMDNLKHMDCDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDS
                     GLRHSNMATESGISLRINVAKSDFTKFINELASLH"
     gene            complement(572..682)
                     /locus_tag="PF788_002658"
     CDS             complement(572..682)
                     /locus_tag="PF788_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304890.1"
                     /translation="MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT"
     gene            complement(768..1499)
                     /locus_tag="PF788_002659"
     CDS             complement(768..1499)
                     /locus_tag="PF788_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HDG6304891.1"
                     /translation="MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINE
                     TEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGK
                     KYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHDFGTL
                     GHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPK
                     EIDNEAEIQAKQVLIDRANRQKKSR"
     gene            complement(1501..2814)
                     /gene="murT"
                     /locus_tag="PF788_002660"
     CDS             complement(1501..2814)
                     /gene="murT"
                     /locus_tag="PF788_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II isoglutaminyl synthase subunit MurT"
                     /protein_id="HDG6304892.1"
                     /translation="MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLA
                     EQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKT
                     KIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKL
                     LLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQ
                     IGHYHCQCGFKREQAKYEISSFDVAPFLYLNINDEKYDMKIAGDFNAYNALAAYTVLR
                     ELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEK
                     VYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPI
                     IVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS"
BASE COUNT          934 a          558 c          374 g         1110 t
ORIGIN      
        1 atcgtatata gcatgtccct ttttaaaatt acaagcataa atattcagac tcaaatatag
       61 ccacacgcct aaactacgga gggatgtggc tgtctttttt gattgtaatt acatatcaga
      121 tttaaatcat taatgtaaag aggctaattc attaataaat ttagtaaaat ctgatttagc
      181 aacatttatc cttaatgaaa taccagattc tgttgccatg tttgaatgcc ttaaaccaga
      241 atcaaaatca atataaatac aaagcagttc ttgattaaaa tcaataattg taaaatgtaa
      301 atcaggttct ataaaatata tttcagtaac aggattgtcg caatccatat gtttcaaatt
      361 gtccatgtca ctatcaaaga gtgcaaattc aaatttaact tcttgatctt cgaaagttgc
      421 actagtgtcg aaataataaa ttttattatc ttcttcgata actacatctt ttaaaataaa
      481 tgttatcgat gttttgctat gtaaataaga tgcatctttt aatatcactt tagtaggctt
      541 catcgtcaaa ttcctttcat cattcatttt ttcatgttgc ataatcacca ttactattga
      601 taattctagg atagatactc attgtataat aattattcac tagaacaaaa aaacacacat
      661 caatttggtt gtttccatcc aaaataatgt gtgtgtttat acatatatga ttaattacta
      721 aacttcatcg tttatcaata ttaaatccat tgatgcgatg ttcagagtta acgagatttc
      781 ttctgtctat ttgctctgtc tattaatact tgtttcgctt gtatttccgc ttcattatct
      841 atttctttag gctcaaacgg aataccctta cgttcacaag ctttttctaa cagataatca
      901 gtgatttcgt aatttttagg taaaattggt ccatgtaaat aagtacctaa taaattttta
      961 taatgaatgc cttctttttt atcttcatca ttattaccat aaccaaaagt aacatgacca
     1021 agtgtaccga aatcatgata tgttctacca ccgtgatttt caaaacctac aatagttcca
     1081 aaagtatcac tttcgataac aatatctcct gttaatcggt ttgtctttga ttcagtataa
     1141 aaatctaaaa tacctaaccc ttctaattct gtaccatcag gcgtgatata ttttttccct
     1201 aaaaattgat agcctccaca aatcgttaat cccggcatac catcttcaat cgcttcttta
     1261 agtggtgtct taattttact taattctttt gttgctaatg cttgttctct atcacttcca
     1321 ccaccgataa agaaaatatc acattcatca aaggtaatac cttctgtttc attgatttct
     1381 acgacattaa ctttaatatt tcgtttttta gcacgttgtc ttaaagcaat aatatttcct
     1441 atatcactgt ataaattcaa tttatctgac ataaaatgat aaatagtcaa ttcatgcata
     1501 ttatgattga cctccttcaa acgaacggtt taattgttca agcataggcg ctaatgatgt
     1561 atagtttggt attgcaactg tgaaaccttt ataatccata gtctttgccg ttgctttata
     1621 aatatcacgc tcaactataa ttggtacttc aacctctgct aacttcaatc gcaattgaag
     1681 ttcttctgct cgtgtacctg tcacgatgat agcttcaatt tgttgcttag ataatttttc
     1741 aaaatctgca tcataaatcc atgaagtatc tcgaccatct gcagcgttat catttagcga
     1801 aataacatac actttttcgc cttctaattg ttcaccaact gataaacttg cattcattcc
     1861 tgcaggattt ttagctaaat tgatcatcgc ttcttttcgt tcttttttaa agtactgcat
     1921 acgaccattg tctgatgtat acgtttcaaa gccattttta attgtttgtt catttaaccc
     1981 tagctctctt aaaacagtat atgctgctaa cgcgttataa gcgttaaagt cacctgcaat
     2041 tttcatatca tatttttcat cattgatatt taaatataaa aacggtgcca catcaaaact
     2101 tgatatttca tattttgctt gctctcgttt gaaaccacac tgacagtgat aatgaccaat
     2161 ttgattataa tgaatataat cgtattgcaa taagcgacca cagtttggac aatatctact
     2221 ttcattcatc gtactttgtt caaattcatg ggcatgtgct ttcataccat agtacacaat
     2281 cgtatcactt gcgattttca aacgactcac aaatggatca tcagcattta gcaataattt
     2341 gatgccttta ttactaattg tctctgcaat gttattaacc ataatatcaa tttcaccgaa
     2401 gcgatccatt tgatctctaa agaaattagt aaataccatc attgaaggtg taacttcttt
     2461 taacacacgt ggaatcgaac cttcatcaat ttcgattacc gcaattttag tcttaggtgt
     2521 tgattgcatg atgaatgcag aagttatacc tgcagccata ttagcacctt cattattgtg
     2581 tataatttga atattatttg cttttaaagt atgtccaatt aagtttgaag tcgttgtttt
     2641 accatttgtt ccactgataa atacaatatc atcaacttgc tctgctaatt ttcttaatat
     2701 atctgtatcc acttttctag cgatttgtcc aggtaaatct gttcctcttt tacctactgc
     2761 tctacttgct ttacgcgcca atttcgctag atggattgcc gtccactgtc tcatgtgttt
     2821 cctcctcaaa tttccactcg catcattata acatgacaag gcaacttcaa aaaagtttct
     2881 caatcacaaa ttgatacagt gtttctaaat tataatcatt ctcatttaga taattaaaaa
     2941 tgatatttat tctcaattaa atatcgctaa atgata
//
LOCUS       DAMQWL010000197         2950 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.205, whole genome shotgun sequence.
ACCESSION   DAMQWL010000197 DAMQWL010000000
VERSION     DAMQWL010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.205"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            81..581
                     /gene="ftnA"
                     /locus_tag="PF788_002661"
     CDS             81..581
                     /gene="ftnA"
                     /locus_tag="PF788_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-type ferritin FtnA"
                     /protein_id="HDG6304893.1"
                     /translation="MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFI
                     QQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFY
                     NLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGA
                     RTFDEE"
     gene            complement(663..755)
                     /locus_tag="PF788_002662"
     CDS             complement(663..755)
                     /locus_tag="PF788_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304894.1"
                     /translation="MTKNTIISLENEKTQINDSENESSDLRKAK"
     gene            970..1524
                     /locus_tag="PF788_002663"
     CDS             970..1524
                     /locus_tag="PF788_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDG6304895.1"
                     /translation="MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNP
                     QDYFSQQNIKIHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQ
                     NIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITF
                     RLLKNYENLTYVTNIYGKNLKDKG"
     gene            complement(1592..2662)
                     /gene="dinB"
                     /locus_tag="PF788_002664"
     CDS             complement(1592..2662)
                     /gene="dinB"
                     /locus_tag="PF788_002664"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011302771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDG6304896.1"
                     /translation="MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVS
                     TASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPM
                     SLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKP
                     DGMTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFG
                     KRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERL
                     NKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRL
                     IGVTVGNLEQSTYKNMTIYDFI"
BASE COUNT         1003 a          509 c          426 g         1012 t
ORIGIN      
        1 ttatttacaa ttgagaatga gtttgttata ctaagtttaa ttcatagtaa ttttaattta
       61 caaataagag gtgtatcaaa atgttaagta aaaatttatt agaagcatta aatgatcaaa
      121 tgaaccatga gtactttgca gcacacgcat atatggcaat ggcagcatac tgtgataaag
      181 aatcgtacga aggatttgca aacttcttca ttcaacaagc taaagaagaa cgtttccatg
      241 gacaaaagat ttataactat attaacgaca gaggtgcaca tgcagaattc agagcagttt
      301 cagcaccaaa aattgacttt tcaagcatac tagaaacttt caaagacagc ttatctcaag
      361 aacaagaagt aacaagacgt ttctataact tatctgaaat cgctcgtcaa gataaagatt
      421 atgcaactat ctcattctta aactggttct tagatgaaca agtcgaagaa gaatcaatgt
      481 ttgaaactca catcaattat ttaactcgta tcggcgatga cagcaatgca ttatatcttt
      541 acgaaaaaga acttggcgct cgtacattcg acgaagaata attaaacatc actacaatag
      601 acagataaat atcatacgac atgataggca tttgggtcac ttacaataac ccaatgtcta
      661 tattattttg ctttacggag atcactagat tcattttctg aatcattgat ctgcgttttt
      721 tcattttcaa ggctaattat tgtattttta gtcatttatt ttttaaacta ctaatgttaa
      781 taactctaaa tttgatgttg aattaatttg acgattttaa agcatatcat catttacttt
      841 ttaatcagag ttacatccaa atgatagatt tcacgttata ccttcacgta taatattatg
      901 tatcgtttgt aagcaaatga ctaaaagtct attaatatat acatttaatt aattgaaagg
      961 attgactaca tgatacaaga tgcgtttgtt gcacttgatt ttgaaacagc aaatggtaaa
     1021 cgtacaagta tttgttctgt cggaatggtt aaagtcattg atagtcaaat aacagaaaca
     1081 tttcatactc ttgtgaatcc gcaagactat ttttcacaac aaaatattaa aattcatggc
     1141 atacaaccag aagatgttga aaatgcacct acgtttgact acgtatttcc atatatgatg
     1201 caatttattg cagatttacc tgttgtcgca cataacgcgg catttgatat gaacgtctta
     1261 catcaaagca ttcaaaatat tggtttacca actccaaatt taacttactt ttgtagttat
     1321 caacttgcta aaagaaccgt tgattcgtat cgatacggtt taaaacatat gatggagttt
     1381 tatcaattag attttcatgg tcatcatgat gcattgaatg atgccaaagc atgcgcaatg
     1441 attactttta ggctactgaa aaattatgaa aatttaacat atgtaactaa tatttatggt
     1501 aaaaatctaa aagataaagg ctaggactaa ataaaatact cccttcaaaa gtaagcattg
     1561 taaaaatgta aactttgcag ggagctttat tttatataaa gtcatatatc gtcatatttt
     1621 tataagttga ttgttctaaa ttacctacag tgacaccaat aagtcgaatt ggtacatcag
     1681 ggtcttttaa atcgttataa agtaaatatg caatattata aatatcttct tcagaactaa
     1741 ccgaatctct taaactcatc tgtttagata gcgtttcaaa ttgataagtt ttaattttaa
     1801 ccgttacagt tttagctgac ttctgtaatt tatttagacg ttcagctgtt ttacctgaca
     1861 attcccatac ttttcttaaa atctcttcat catcattcac gtctgttgca aatgtgcgtt
     1921 cagtccctac tgattttctt actcttgatg atttcacttc actatggtca ataccgcgtg
     1981 ccttgttata taaaccccga cctctttttc caaacaaacg tattaattca aattccgttt
     2041 tctcatataa atctctaccg ttaaaaatac cattatcatg cattactttt ttggaagctt
     2101 tacctacgcc tggaaaatct ccaatatcca atgtcatcaa aatatcatgg acattttgat
     2161 aatcaatcac agtcatacca tcaggtttat tcataccact cgctaattta gctaaaaatt
     2221 tgttataaga aacacctgca gatgctgtta aatgtgtctg ctctagaata tcttttctaa
     2281 tatactgagc aattttcgaa gcaggaaggt ctggtctcac taattctgta atatctaaat
     2341 acgcttcatc caatgacatc ggttctacct tatctgtata acttcggaaa atagacataa
     2401 tctgcgcaga tgtttctcgg taagcaccaa aattacttgt gacaaagtat ccatttggac
     2461 ataatttatg cgcttgtgac ataggcattg ctgaatggac gccgtatttt cgtgcttcat
     2521 aggatgccgt agagacaaca cccctactgc ttgctttacc accaacaatg actggtttcc
     2581 ctttcaattt ggggttatct ctcatttcga cttgtgcaaa aaaatagtcc atatctatat
     2641 gaataattcg tctctcagtc aagtgctcac ctccctacta atttttactt ttataacgca
     2701 caaaaatatc tcaacataat tatacgctgt gtacgatttt tttacataaa tcttgcactt
     2761 agcgataact atattgagat aactacaagt tgttataaaa tcaattgcta tttaagcatg
     2821 atgatgaaga cgattgagta agaaaacata ggtaatctga aataattcaa gcaaattcat
     2881 tttgttggta tcatcatatt aaaatttatt attgagtcgg cttttgatga tacaaataaa
     2941 tactatcttc
//
LOCUS       DAMQWL010000198         2941 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.206, whole genome shotgun sequence.
ACCESSION   DAMQWL010000198 DAMQWL010000000
VERSION     DAMQWL010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.206"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            313..516
                     /locus_tag="PF788_002665"
     CDS             313..516
                     /locus_tag="PF788_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterile alpha motif-like domain-containing
                     protein"
                     /protein_id="HDG6304897.1"
                     /translation="MTFYNFIMGFQNDNTPFGILAEHVSEDKAFPRLEERHQVIRAYV
                     MSNYTDHQLIETTNRAISLYMAN"
     gene            complement(513..749)
                     /locus_tag="PF788_002666"
     CDS             complement(513..749)
                     /locus_tag="PF788_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304898.1"
                     /translation="MDNHNQCNYVNPQNVSLDWECFIISKSEMLLDGVPNELINTWLD
                     KDIITPFSIRNDEINFKTKDIWDALIHHNWYYSN"
     gene            974..1555
                     /locus_tag="PF788_002667"
     CDS             974..1555
                     /locus_tag="PF788_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001140698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDG6304899.1"
                     /translation="MAKTLYIMRHGQTLFNFKGLIQGFGDSPLTELGIAQAQKARSYY
                     ETKGINFDLYASSTQERASDTLENVAPNQSYQRFKGLKEWHFGIFEGESVYLFDNLYK
                     PEDLFGDRIVPFKGEARQQVEERIVKTLHDIMSQTKNNALVVSHGTIMGVFLRYCLKL
                     DEALKHNIGNCNILKFEYDNGTFKFVELIDPNL"
     gene            complement(1628..2245)
                     /locus_tag="PF788_002668"
     CDS             complement(1628..2245)
                     /locus_tag="PF788_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDG6304900.1"
                     /translation="MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAII
                     TAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQ
                     IMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFL
                     LAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF"
     gene            complement(2400..2894)
                     /locus_tag="PF788_002669"
     CDS             complement(2400..2894)
                     /locus_tag="PF788_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6304901.1"
                     /translation="MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDI
                     LNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINF
                     IINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYD
                     LINK"
BASE COUNT         1077 a          427 c          437 g         1000 t
ORIGIN      
        1 ttcttaataa atatgataac actatttttc aataggtaaa taaaaagtat agttattttt
       61 aaaatattat ttgcagaatg ctaaagttta ttaattcaaa caagtgagca tatatagggg
      121 tgtattgtat taatatgaaa agaatattta catactaaaa actcttaaag ttgtataatt
      181 cgttaatatt tttagaatca gatatcaaaa aaatgtgcaa aatcactttt gcacatttac
      241 aaatactagt tttctgataa gattaataat aacactttaa atagcgctta ataaatgaag
      301 ggggcaagtc ttatgacgtt ttacaatttc atcatgggtt ttcaaaatga taacacacca
      361 tttggtatat tggccgaaca cgttagtgaa gataaagcat tccctcgatt agaagaaaga
      421 caccaagtaa ttagagcata tgtgatgtct aattacacag atcatcaatt aattgaaact
      481 acaaatagag ctattagctt atatatggca aattaatttg agtagtacca attatgatgt
      541 attagtgcat cccaaatatc ttttgtttta aagtttattt catcatttct tatcgaaaat
      601 ggtgtaataa tgtctttatc taaccaagtg ttgataagtt catttggtac accatctaac
      661 aacatttcac ttttactaat tataaaacat tcccagtcaa gtgaaacatt ttgtggattc
      721 acataattac attgattatg attatccata aacactcact cctttaaaat tctgtactct
      781 tcattgcgtt ttaccccgtc acattatctt ttaaactaaa atcatcatta cttatgaaaa
      841 aaatgtacat caaaagcaaa ggttttcgct accgaaaaag tttaaataat ggtttaatat
      901 atttggtact cattttaata aaaagagaat acattttgag ctatcaatac tttttattga
      961 agaggtgtta ttgttggcta aaacgttata tataatgcgc cacggacaaa ctttgtttaa
     1021 ttttaaggga ctaattcagg gatttggaga ttcgccgcta acagaacttg gaattgctca
     1081 agctcaaaag gcacgtagtt attatgaaac taaggggata aacttcgatt tatatgcatc
     1141 atcaacgcaa gaacgcgcaa gtgacacact tgaaaatgtt gcacctaacc aatcgtatca
     1201 acgttttaag ggactgaagg aatggcattt tggaatattt gaaggtgagt cagtctatct
     1261 atttgataat ctatacaagc ctgaggactt attcggagat cgaattgttc ctttcaaagg
     1321 agaggcaagg caacaagttg aagaacgcat tgtgaaaact ttacatgaca ttatgtctca
     1381 aacaaagaat aatgcattag tcgtgagtca tggaacaata atgggagtat ttttaagata
     1441 ttgccttaaa ctagatgaag cattaaagca taatatcggt aattgtaata tcctgaaatt
     1501 tgaatatgac aatggaacat ttaaatttgt tgagttaatt gatccaaatt tataataaat
     1561 aaagcgttat acatagacac aagtatgtct tttgtataac gcttttaaaa tacaactaca
     1621 taacgcttta gaataataat tgaataagtt tttgtaatat catcagagca acaataataa
     1681 ttattatgct tgatatttta ttgattattg ttaataattt tccggtttta tcaattgatc
     1741 caaccatttt tcctaaaatt gcgagtaaaa agaaccataa ccatgaaacg ctaatacaag
     1801 cgattgtaaa cgcaatttta ttgctgccac tatataatgc agcactacta ccaattactc
     1861 caattgtatc taaaatagca tgtggattga gtaatgaaac tgataaagca aaacttactt
     1921 gtttcattgg agacataatt tgagtttctc catctgttga gggtttatca tgccaaatgg
     1981 tccaagccat atacatcaag aaaattaaac caactatata aataattgct tgaagtacag
     2041 gtaaagacat aataatgata gatactccta ccactgcaat aataataagt aagctgtctg
     2101 acaacccggc tgtaattatt gcaggcaata catatctata ttttggttga ttagctcctt
     2161 ggttaaaaat aaatacattt tgtgcaccta aaggtaaaat tagaccaatc gctaagataa
     2221 atccatgaat aattgcggtt accattaagt tttgacaccc ctaaaacata gaatattctg
     2281 aaaaaactta ttgttatcat atcaaataaa aaacaactac tcaatagtag agtagttgta
     2341 tgaaaaatag aacctatatg atttgaattt atgagaaatg tagaatatat aaaactgtat
     2401 tacttattaa tcaaatcata aaaaagccaa tgttcatcga aataggtatt tccgatttta
     2461 attgcatttt tctcaaaacc aagaatgtcg aatcctagtg cactatagaa aactttagca
     2521 cctatgttgt ttgacacaat tgatgtaagt aaagattcgt aattgttctg ccgtgcataa
     2581 ttaataatga aattaatgag ctcgctatta atcgatttat cgttattagt aacaaagttg
     2641 tatttaatta atgatttatg ttcttttcca acgtatcgaa tttgttctaa ggcagctgtt
     2701 gcgataagtg tttcgttttc ataacagcca aatacaatac atttcggtga accttgattt
     2761 aaaatgtcat gtattaaggt gtcagtcatt gtttgactat aatgtgaatc ttgagtgaat
     2821 tcttcattga ctgtcgaaac aagtctctta tactcattaa aatcattatt cgttaatgtt
     2881 ttaatttcaa tcattactga cctccttaat cattattaag aaagattttg tactaaaaaa
     2941 a
//
LOCUS       DAMQWL010000199         2921 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.207, whole genome shotgun sequence.
ACCESSION   DAMQWL010000199 DAMQWL010000000
VERSION     DAMQWL010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.207"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            643..1578
                     /gene="lukE"
                     /locus_tag="PF788_002670"
     CDS             643..1578
                     /gene="lukE"
                     /locus_tag="PF788_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_114304764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-component leukocidin LukED subunit E"
                     /protein_id="HDG6304902.1"
                     /translation="MFKKKMLAATLSVGLIAPLASPIQESRANTNIENIGDGAEVIKR
                     TEDVSSKKWGVTQNVQFDFVKDKKYNKDALIVKMQGFINSRTSFSDVKGSGYELTKRM
                     IWPFQYNIGLTTKDPNVSLINYLPKNKIETTDVGQTLGYNIGGNFQSAPSIGGNGSFN
                     YSKTISYTQKSYVSEVDKQNSKSVKWGVKANEFVTPDGKKSAHDRYLFVQSPNGPTGS
                     AREYFAPDNQLPPLVQSGFNPSFITTLSHEKGSSDTSEFEISYGRNLDITYATLFPRT
                     GIYAERKHNAFVNRNFVVRYEVNWKTHEIKVKGHN"
     gene            1580..2563
                     /gene="lukD"
                     /locus_tag="PF788_002671"
     CDS             1580..2563
                     /gene="lukD"
                     /locus_tag="PF788_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-component leukocidin LukED subunit D"
                     /protein_id="HDG6304903.1"
                     /translation="MKMKKLVKSSVASSIALLLLSNTVDAAQHITPVSEKKVDDKITL
                     YKTTATSDNDKLNISQILTFNFIKDKSYDKDTLVLKAAGNINSGYKKPNPKDYNYSQF
                     YWGGKYNVSVSSESNDAVNVVDYAPKNQNEEFQVQQTLGYSYGGDINISNGLSGGLNG
                     SKSFSETINYKQESYRTTIDRKTNHKSIGWGVEAHKIMNNGWGPYGRDSYDPTYGNEL
                     FLGGRQSSSNAGQNFLPTHQMPLLARGNFNPEFISVLSHKQNDTKKSKIKVTYQREMD
                     RYTNQWNRLHWVGNNYKNQNTVTFTSTYEVDWQNHTVKLIGTDSKETNPGV"
     gene            2805..>2921
                     /locus_tag="PF788_002672"
     CDS             2805..>2921
                     /locus_tag="PF788_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gallidermin/nisin family lantibiotic"
                     /protein_id="HDG6304904.1"
                     /translation="MEKVLDLDVQVKGNNNTNDSAGDERITSHLFCSFGCEKT"
BASE COUNT         1132 a          377 c          497 g          915 t
ORIGIN      
        1 atgcgtggac agtaaaacga agtacatgcg aatgtagtag ccgtttacta tgagactagg
       61 cattataatt gaatatcata gtataaattg ccatgagagt agaagcttca gtttatgaag
      121 acttcgaaat catggttttt tatttttaaa gtgaaatttt agttcatagt aaatatatat
      181 atgtttttaa ttagactaaa tcatagcatt aaattttttt agatgaagta agcgatatta
      241 cgaaatgata tatagaacat ttcagttata acagtatacg aagtaatcat cttcgtttaa
      301 cggacaatag ttaataatca gttaatttta aattcaatta tagattattt gtgataatac
      361 aaacattatt tttgaagatt tgattaaagt cgtttttatt tttacagaga aaagattgag
      421 tatcggtaat tttatcatat tgttcgaata taaagggaac tatttaaagg taatgaaggt
      481 tgcgccaaaa tgaccggttt tcagcagcat aaatgaataa attgtgtcat ttttaatatt
      541 ttatagcatt ttatttttta atgaacagtt aattttataa ataagtgaaa taatctagaa
      601 taaatttgta ttaaaaattt atatagaaag aaagtgaaac ttatgtttaa gaaaaaaatg
      661 ttagctgcaa ctttgtcagt aggactgatt gcacctttag catctccgat tcaagaatct
      721 agagcaaata ctaatattga aaatattggt gatggtgctg aagtaatcaa acgtacggag
      781 gatgtaagta gtaagaaatg gggcgttact caaaatgtcc aattcgactt tgtaaaagat
      841 aaaaaatata acaaagacgc tttaattgtt aaaatgcaag gttttattaa ttccagaact
      901 tcattttcag atgtgaaggg tagtggatat gaattaacta aacgaatgat ttggccattc
      961 caatataata taggactgac gactaaagat ccaaatgtta gcttaatcaa ttaccttcct
     1021 aaaaacaaaa tagaaactac tgatgttggt caaacattag gatataacat tggaggtaat
     1081 ttccagtcag caccatctat aggtggcaat ggctcattta attattctaa aacaattagt
     1141 tatacccaaa agagttatgt cagtgaagta gacaagcaaa actcaaaatc tgttaaatgg
     1201 ggtgttaaag caaacgaatt tgttacgcct gatggaaaaa aatctgcgca tgatagatat
     1261 ttattcgtac aaagtccaaa tggtccaaca ggttcagcaa gagaatattt tgctcctgat
     1321 aatcaattgc cacctttagt tcaaagtggc tttaatccat cgtttatcac tacactatca
     1381 catgaaaaag gttcaagtga tacgagtgaa tttgaaattt catatggtag aaacttagat
     1441 attacatatg cgactttatt ccctagaact ggtatttacg cagaaagaaa gcataatgca
     1501 tttgtaaata gaaactttgt agttagatat gaagttaatt ggaaaacaca cgaaattaaa
     1561 gtgaaaggac ataattaata tgaaaatgaa aaaattagtc aaatcatcag ttgcttcatc
     1621 aattgcactg cttttgctat cgaatacagt tgatgcagct caacatatca cacctgtaag
     1681 cgagaaaaaa gtagatgaca aaatcacttt atacaaaaca acagcaacat ctgataatga
     1741 taaattgaat atttctcaaa ttttaacgtt taatttcatt aaggataaaa gttatgacaa
     1801 agatacgtta gtacttaagg cagccggaaa cattaattca ggttataaaa agcctaatcc
     1861 aaaagattac aattactcac agttttattg gggcggtaag tataatgttt cggttagttc
     1921 agaatcaaat gatgctgtaa atgttgttga ctatgcacct aaaaatcaaa atgaagaatt
     1981 ccaagttcaa caaacattag gttattctta tggcggagat attaatatat ctaatggctt
     2041 atcaggtgga ttaaatggat caaaatcatt ttcagaaacg ataaattata aacaagaaag
     2101 ttacagaact acgattgata gaaaaacaaa tcataaatca attggctggg gtgttgaggc
     2161 gcacaaaatt atgaataatg gttggggacc atatggtaga gatagttatg acccaacata
     2221 tggtaatgaa ctgtttttag gcggtagaca aagtagttca aatgctggtc aaaatttctt
     2281 gccaacacat caaatgcctt tattggcgcg tggtaacttt aacccagaat ttataagcgt
     2341 actttctcat aaacaaaatg atacaaaaaa atctaaaatc aaagtaactt accaaagaga
     2401 aatggataga tatactaatc aatggaatcg actacactgg gttggtaata actacaaaaa
     2461 tcaaaataca gtaacgttta catctactta tgaagttgac tggcaaaacc atactgttaa
     2521 attaatcggt acggattcta aagaaactaa tcctggagta taactgttag aaatagagga
     2581 agttaaaccc gaaatttaag agttaaacaa aaaatattca caacatatta aaaaaagaag
     2641 ttacattatt tgtttaaact aacaatagta ccataaaatt aatgacgatt tacaaattaa
     2701 taacaaataa ttattattaa attcattgat ttattgtgtg gtaatgatta atatgacaat
     2761 tgaagtgggt cttaacttca acttttaaat agggggtttt atctttggaa aaagttcttg
     2821 atttagacgt gcaagttaaa ggaaataaca acactaatga ttcagcgggt gacgaaagaa
     2881 taactagcca tcttttttgt agctttggtt gtgaaaagac g
//
LOCUS       DAMQWL010000200         2898 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.208, whole genome shotgun sequence.
ACCESSION   DAMQWL010000200 DAMQWL010000000
VERSION     DAMQWL010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2898
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.208"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(893..1087)
                     /locus_tag="PF788_002673"
     CDS             complement(893..1087)
                     /locus_tag="PF788_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001004925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304905.1"
                     /translation="MNENLEKYIKSLPLLGLLISILLIVLFFFILDVDEDLFVVFLYC
                     LLPLIVNLSIYGFYVFVKRK"
     gene            1197..1889
                     /locus_tag="PF788_002674"
     CDS             1197..1889
                     /locus_tag="PF788_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000691527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304906.1"
                     /translation="MKIIKLFSIISLFLLVFSANFSNAYANEEQKSSLLENQKEKLKS
                     KNIEVSQMTKKEISFLEQLQNKNEDMQKFEKQMKKEGFKKIKLEDKNSKLKYLATEAN
                     DKNAYGYIANNAYKNEKTKEIVVSETIYDNYNKKITKFIAEKRSMTENKEGKILINKN
                     YVEYKAEKVDKNRPVTYAGFKWNGKAFACSMAGLYACAHYCGVWAIVNPIAGGVCEAV
                     CGTAFAAGCSVG"
     gene            complement(2057..2206)
                     /locus_tag="PF788_002675"
     CDS             complement(2057..2206)
                     /locus_tag="PF788_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000695367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304907.1"
                     /translation="MKIKTFATFTHRQLDKQVNRFLKNDIHVLEIQTHSNWLYISAIV
                     FYEDK"
     gene            complement(2753..2898)
                     /locus_tag="PF788_002676"
                     /pseudo
     CDS             complement(2753..2898)
                     /locus_tag="PF788_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
BASE COUNT         1126 a          451 c          389 g          932 t
ORIGIN      
        1 cgtgtctatg cgtagacatg gagacacttc agaattatgg agtgattaca tgagtttaac
       61 tatttttctt tattcagttt taggaagttt attagcaaat tatatctacg aaaaatcttc
      121 aaaataaata actttttcgg ttctactttg tacactttat ctacctggta gacctaattg
      181 ttattgcttt acaggtctaa aattcgtcgt tataatctag ttaaatcccg taagggcgca
      241 cttatacgtc ggataaatcg acatgtgcaa aaacgtaatc gaccttcgtc gattttttta
      301 tttcaaaatt aaagaaacgg cttgagatat tccgagcagt tataaaaatt aatttgcgtt
      361 gaatattgct actacattct tgaaaaagtg atgtagattt atagcccata acttttttga
      421 attacatcga cgatacggcg tcgaaagaaa aataaataga ccgtatgaaa gaaaaagcta
      481 cctcacttta tctggggtag cttttatttt ttatgccctt attttgaatt ttaagagggc
      541 attttaaaga tttaggggtg attcatatag ttttatatct aaaacttata tatgctttta
      601 aaacgcaaat atgagccaaa taaatatatg ctattttcaa aaacaaaaat ttgagcaaaa
      661 acaataacta tttttagaca ctgcccattt acatgcaaat taaaaattag cataaaattc
      721 tttaaaactt ccccacgttt ttctaaattc ctgtagggcg tttttatcaa aaatcaagac
      781 aagaagaaac tcgttcacac tcgtttcaaa aaaacaagaa atctaatcta tacacctacc
      841 gttttccaac cccctcaaag catacaaatt aaaaacaaaa ttattcataa tcttactttc
      901 ttttaacaaa aacataaaaa ccataaatag acaaattaac tatcaaaggc aataaacagt
      961 ataaaaaaac cacgaataaa tcttcatcaa catctaaaat aaaaaagaat aaaacaatta
     1021 acaaaatact aattaacaaa cctaaaagtg gcaaactttt tatatatttt tctaaatttt
     1081 cattcataaa atagactcct ttcaaaaata tgtttataaa tatattaaaa taaatattga
     1141 ttttataaag cgcttactta tacaattaaa atatcttatt atcttggagg tatcaaatga
     1201 aaattataaa attattttca ataatttcct tgttcctact ggtatttagc gcgaattttt
     1261 ctaatgctta cgcaaatgaa gaacaaaaaa gttctttact agaaaatcaa aaagaaaaat
     1321 tgaaaagcaa aaacatcgaa gtatcacaaa tgaccaagaa agaaataagt tttctagaac
     1381 aattgcaaaa taaaaatgaa gatatgcaaa aattcgaaaa gcaaatgaaa aaagaaggat
     1441 ttaaaaaaat aaagctagaa gacaaaaatt ctaaattaaa atatctagct acagaagcaa
     1501 atgataaaaa tgcatatggc tacatagcta ataacgctta taaaaatgaa aaaacaaaag
     1561 aaattgtagt ttctgaaaca atatatgata actacaacaa aaaaatcaca aaattcattg
     1621 ccgaaaaaag aagtatgact gaaaacaaag agggaaaaat acttattaac aaaaattacg
     1681 ttgaatataa ggctgaaaaa gttgataaaa acagaccggt aacatatgca ggattcaaat
     1741 ggaacggcaa agcattcgct tgtagtatgg ctggacttta tgcatgtgct cactactgtg
     1801 gagtatgggc aatcgtaaat ccaatagccg gcggtgtatg tgaagcagtt tgcggaactg
     1861 catttgcagc tggatgctct gtaggttgat tttattccaa ttgttttatt gacgttgagc
     1921 ctcggaaccc ttaacaatcc caaaacttgt cgaatggtcg gcttaatagc tcacgctatg
     1981 ccgacattcg tctgcaagtt tagttaaggg ttcttctcaa catcaataaa ttttttcggc
     2041 ataaatacga tgttccttat ttatcctcat aaaaaacaat agctgaaata tataaccaat
     2101 tactgtgtgt ttgaatttct aatacatgaa tatcattctt taaaaaccta ttaacttgtt
     2161 tatctaattg acgatgagta aaagtagcga aagttttaat cttcatgata tctctccttt
     2221 tataaaaata gcaatcctta ttacaatatt aaacactttt attttggatt ttaagaggca
     2281 ttttgaagac ttagaggcaa atcatatagg ttttgtactt aaaaatctat acagtctctt
     2341 aaaacgcaaa tatgagccaa ataaatatat gctaatttca caaacaaaaa tttcagcaaa
     2401 atcagtgact aattttttag atactgccca tttacatgca aatttaaaaa ttagcataaa
     2461 atactttaaa acttccccat gtttttctaa attcctgcag ggcttttctt atcaaaaact
     2521 tagaaatttt aatttaactc taaaatctcc gtaagagcat aagggaaatt tgctatcatt
     2581 caaaaatgat agatctggca aggccagaca ttccaagggt tttaagttat tttaaagtga
     2641 tatcatacaa agctgtagtg tcacactttt gtgacactac atacagcatt tgtcacaaaa
     2701 ataagacagc acttttttac agaaaaacaa taaaaaaaga catcagttat cactaatgtc
     2761 ttaaataata attttgcttt tcgaaattcc aaattgcggt aattgaatgt gctttttttc
     2821 ttcgtctgtc gttttatctt catcacttgt attaatcaaa ttaccatctt cggcatcgtc
     2881 taagtttaaa attttatg
//
LOCUS       DAMQWL010000201         2886 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.209, whole genome shotgun sequence.
ACCESSION   DAMQWL010000201 DAMQWL010000000
VERSION     DAMQWL010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.209"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..270)
                     /locus_tag="PF788_002677"
     CDS             complement(<1..270)
                     /locus_tag="PF788_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 family protein"
                     /protein_id="HDG6304908.1"
                     /translation="MLCETENINKNPKYRIIKYKDEYLMIDLVSTWLALFFPMINWLI
                     PKKYVKISEKDFETLNIVKTAKINSFWPVAGSTVLFGVMLRRYSHL"
     gene            complement(394..1023)
                     /locus_tag="PF788_002678"
     CDS             complement(394..1023)
                     /locus_tag="PF788_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 domain-containing protein"
                     /protein_id="HDG6304909.1"
                     /translation="MLLCDVRVIYKNPKYKVIQHNGEYLLVDLVSTWFVYFFPFINWF
                     IPKKYAIISEEEFENLNVVKPNKNNVFWSVIGSSVLFGVTLRKYIHVFDVQLDKLVVM
                     ILCALALICVIVFYFNLNRKLKLKVFDTNIEKNKRVILIPTFKLGCFLVFGYIFAGSF
                     SIFSLIALMTIEPQNIIIFIYWIMMTMLFFLLNMTSIGNEKVRVIMKNN"
     gene            complement(1476..2105)
                     /locus_tag="PF788_002679"
                     /pseudo
     CDS             complement(1476..2105)
                     /locus_tag="PF788_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001837136.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 family protein"
     gene            complement(2152..2793)
                     /locus_tag="PF788_002680"
     CDS             complement(2152..2793)
                     /locus_tag="PF788_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 domain-containing protein"
                     /protein_id="HDG6304910.1"
                     /translation="METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFIN
                     WLIPKTYVKITKNDYEKLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEEL
                     IVWSSCFIGFLEIIFFYCYLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFT
                     GFMSYGAFYLLVFENVQNLILYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK"
BASE COUNT         1072 a          470 c          311 g         1033 t
ORIGIN      
        1 taaatgggaa taccttctta acataacacc aaataagacc gtacttcctg ccactggcca
       61 aaaagaattg attttagctg tcttcacaat gtttaaagtt tcaaaatctt tttcgctgat
      121 tttgacgtac ttttttggaa tcagccaatt aatcattggg aaaaagagtg ctaaccatgt
      181 acttactaaa tcaatcatca aatattcatc tttgtatttg ataattctat atttgggatt
      241 cttattaata ttttcagttt cacaaagcaa tgtctccact tcttttcaat tggttttata
      301 ttgatacact ttcatataca ttagaagtca tttaaattct actagcgtct taaaaggatt
      361 gtgtcgacaa catttagaat attttaaatg taatcaatta tttttcatta taacgcgaac
      421 tttttcatta cctatcgaag tcatatttaa caaaaagaaa agcattgtca tcataatcca
      481 ataaataaat attattatat tttgaggttc gattgtcata agggcaatta atgaaaatat
      541 tgaaaaactt ccagcgaaaa tatatccgaa aactaaaaaa cagccaagtt taaacgttgg
      601 tattaatata actctcttat ttttttcaat atttgtatca aacactttta acttaagctt
      661 tctatttaag ttaaaataaa aaactataac acaaattaaa gcgagagcac acaatatcat
      721 tacaactagc ttatctaatt gaacatcaaa aacatgtatg tatttcctta aagtaactcc
      781 aaacaaaacc gaacttccta taactgacca gaaaacatta tttttatttg gtttaacaac
      841 atttaaattt tcaaattctt cttcgctaat tatcgcgtac ttttttggaa tgaaccaatt
      901 aatgaaagga aaaaagtaca cgaaccaagt gcttactaaa tcgactaata agtattcacc
      961 gttatgttga atgactttgt atttcggatt tttataaatg actctgacat cgcaaagcaa
     1021 catttaccac tcccgtttca ttagttttaa atgatcccca atactttttg taccttcacc
     1081 aactatcgtt ccaacactat ctacagcttt ttctgtggta tttttaaaca gcgtctattt
     1141 aatgtcttat ccaattagtt ttatctctta atccaaattt attagtatga aaagtccaat
     1201 ttttaagaat tgtctaaaca gattccgcaa caaaaccagc taaaaccgtc catactattg
     1261 gattaaaaac gccaatgtta taagagctat catacaaaat aacacgctct atatttcatt
     1321 tttaaattaa aacagttttt tcctttatca atcacaatgg gcattttcac ttggtatatt
     1381 caaacattac tatctatttt cctgatttaa gatatgatta tatttttttg aaccaccgtt
     1441 taaatatgcg atactaccaa tttcgatcat ttttactact cgtttattct taaaataaca
     1501 tgaacatttt tattacctat cgaagccata ttcactaaaa agaaaaacat cgtgataata
     1561 acccaagtta aaaatattat tatattttgt gactctgtcg tcaaaagaat ggttaaagta
     1621 aatattgaag cgcttcctaa aaaaaagtac gcaaaaacta ttaacaatcc ttgtttgaaa
     1681 gtcggtatta atacaactct attcttatta accacgttgg tattaaaaat ttttaatgtt
     1741 aattttttat ttagataaaa ataaaaaatt aacatcccta ttaacatgat aaaaaataca
     1801 gtgattgcta gttgtttttc aaactgaaca ttaaagaagt taccgtactt tctcaatata
     1861 attccaaata gaactgaact tcctgcaacc ggccaaaaaa cattattttt aacaggctcg
     1921 actatattta acctttaaaa ttcattttcg ctaatttttg cgtatttttt gggcaaaaac
     1981 caattaatca tagggaaaaa ataagtaatc caagtactta ctaaatcgac catgaaatat
     2041 tcattattat atctaataac tcgatattta ggatttttat aaatttgtct agattcacaa
     2101 agcactgttt accaccccta attaacaatt gaaaactaac taaatttgta actatttatt
     2161 agactttaag aatatatgta cttttttatc tataattgaa tgcatattca taaacataaa
     2221 tagcatagtc atgaaaagcc aagaaacata taagattaaa ttttgcacat tttcaaatac
     2281 caacaagtaa aatgccccat aagacatgaa accagtaaat aggtaataaa aaattgtgaa
     2341 acaaatattt ttaaaggagg gtaataatct taatttaagt tcattatttt tactttcatt
     2401 ataaatattt aatgttaatt tcttatttag ataacaataa aaaaatataa tctctaaaaa
     2461 cccaatgaaa cagctgctcc aaacaattag ttcttctaat tgaaaatcaa ataaataagt
     2521 atttcttctt acagtaccac caagtaacac aatacccgcg aatatggtcc atcctatcga
     2581 tttattttta actggtttga caatatttaa tttttcataa tcattcttag tgattttgac
     2641 atatgttttc ggtatgagcc agttaataaa tggaaagaag aagacaatcc aattacttgc
     2701 caaatcaatc attaaatatt cactatcgta tttgattatt cgatatttag ggtttttatt
     2761 aataacttta gattcgcaaa gcaatgtctc cacatccctt taattttatg tgtaatacat
     2821 ttttcgatac ttcaaaagac attcaaatac tatcaagtta ctgtcatcaa aggttttatt
     2881 aactga
//
LOCUS       DAMQWL010000202         2815 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.210, whole genome shotgun sequence.
ACCESSION   DAMQWL010000202 DAMQWL010000000
VERSION     DAMQWL010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.210"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1096
                     /locus_tag="PF788_002681"
     CDS             <1..1096
                     /locus_tag="PF788_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SAP domain-containing protein"
                     /protein_id="HDG6304911.1"
                     /translation="VNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVS
                     IYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILK
                     KTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHG
                     YNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNE
                     IQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVV
                     SNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVA
                     IDIRSGEIHLVLDDDSLDILIQNQKYGNEF"
     gene            1139..1622
                     /locus_tag="PF788_002682"
                     /pseudo
     CDS             1139..1622
                     /locus_tag="PF788_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001837446.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            1783..1887
                     /locus_tag="PF788_002683"
     CDS             1783..1887
                     /locus_tag="PF788_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304912.1"
                     /translation="MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK"
     gene            complement(2387..>2815)
                     /locus_tag="PF788_002684"
     CDS             complement(2387..>2815)
                     /locus_tag="PF788_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDG6304913.1"
                     /translation="NGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAE
                     NIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTK
                     VENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK"
BASE COUNT         1048 a          330 c          482 g          955 t
ORIGIN      
        1 tgtaaataga ttggttggag aagagatatt tgctaataag tgccttgcta ataatgatgt
       61 tcaaattatg aattcaataa aaaaattaat tgaagctgag ttattaacaa cgactaatga
      121 ttttgaagtt agtatatata aaaagacaag acctgaatta caaagtattt taaaaagttt
      181 tggtataaaa acaacaggta ataaacctga cttaattaaa cgtattgacg acaattttca
      241 tattattaat aacttagatt taccatatgt atatatacca actaagaaag gagaagaaat
      301 tttaaagaaa acagagtact taacctcttt tatacaaagt tatggtgaaa tttctcttga
      361 gcgtgcttat tatttggttg aaaactatat agatgaaaat tgcgatgata aagttgcaga
      421 aatatacaag tttgaatttc aaagaaaata tgacaatggc gagtttgatt ttaatcatgg
      481 atataatttc gaattgaata tgttgataga tcactataaa agagatgtaa aagactacga
      541 taatgccaga aagtattcaa atatttatct ttactttggt ttgagagatt tcttaaaaaa
      601 attaatgagt aattattcat attacgatag taaagggaat atagatttga acgaaataca
      661 aaacgatctg aatagattta tcaactctag cgcttctggt atgtacgagc gattaatata
      721 taatgaaaat ttatccaata atattatgtt tgaattattt aaaaaggaca cacaagatta
      781 tagtgatttg gaagaacaat tgattgaaaa gttcataaac tatgtagtgt ctaatgtaaa
      841 aaaagaaagt aggagtaata ctcttataga gttatcaaaa attttagaga acggatatac
      901 aattgataaa gaagaattta aaaaagaaga tgattatctt tctaagtaca tatttactga
      961 catagattat ttgaaaaagt tagaatcaaa aataaacgtt gctattgata ttcgaagtgg
     1021 agaaattcat ttggtattag atgatgatag ccttgatata ttaatacaaa atcaaaaata
     1081 cggcaatgag ttttgagtca taactaaata taatatgttg aagagaggtt ttatttaaat
     1141 ggctaaaatt ggttatgatc gtgtatcaac gaaagattaa tatcgataca cttaaagaat
     1201 ttgggtgtgg gtgtgtatat agtgaaagaa taagtggtgt caaacgtaca gagcttgtta
     1261 agtgtttaga ttatttacga gagagcgaca cattagttgt ctatcaactt gatcggttag
     1321 gtagaacgac aaaactatta attgaattat cacaatgatt cgatgataac ggaattgact
     1381 tacaaattag taacatgaac atttcaacga aagacacaat gggcaaaatg ttttttacga
     1441 tgatgagtgc atttttcagg attagaagtt aatttactat gtgagtgtat aaaatagact
     1501 tagcagcaac aagagcgaga ggccgaaaaa gcgggcgccc ctctttacca gagaataaaa
     1561 aatgagaaat taaattttta tatgatgaac aaacgataac aggggaagaa atagctagtt
     1621 agacaagggt atgtcactca actgtttatc gagttgatta agaaatgaaa aaacttatac
     1681 tatgaattac tgtttaaaag tgtgcatgtt ataatattta ttgagcaagt tggatagatg
     1741 gtggctaatc tcttaataaa ggggtgatgc ctatggttat agttgttact cctagaaagg
     1801 actagcatgt ctgattttga aatgcttatg gttgtattaa caatcattgg tttagtattg
     1861 attagtactc aagaccataa aaaataacct tctattcgct ttgaccggca tttttgaagg
     1921 ctatttttaa ataaaatata aggtcaccgt ctttttaacg ggctcattag ggtaacatgt
     1981 ttccgagtgt tgcccttttt gtgtttcaag agttaatgat tttcatcttt tgcttctact
     2041 tactacaaat atattttaac acatttttct tatgaattgt agttctgaac ataatcagaa
     2101 ttaataaaac caactttcca tacagcagaa aatacaatta aaagtataga atgtaatcac
     2161 gaattatata aaaagtattg gagacctctt catatataga taattcactt agttatttta
     2221 gaaagaagcc cctaacaact aaagttgaaa aatagaggaa cacagttgga tgctacgcat
     2281 caactgcata agagccccta acaactaaag tttaaaagta ggagcgcctg cgctaagcgc
     2341 atgcataaga gcccctaaca actaaagttg taaggggctc taaaatttat tttggttgat
     2401 tgtcttctgg tttatctgaa gtcattgttt ttgttgtatt atcatttaat gaatcttgtg
     2461 ctttttctgt ttttgtttca acagatgttg tcactttatc attttctact tttgtatttt
     2521 ttggttcagt gacaactttt ttattcttgt cagctgtttt tactttatct ttagtaattt
     2581 tttgaccacg ttttaagtaa tattgaacga tacccattaa aatgattgca tgaataacaa
     2641 cgaataaaat aattgtcatt actgtataaa ctcttatgat attttctgca acactttgag
     2701 agagtgattg cgtattaaat gaaatcaagt aaccaacagg tgttttaaat aaaataataa
     2761 ttaagtttaa taatagtatt ccaatgaaaa atttgaaaaa tgttttttga ccatt
//
LOCUS       DAMQWL010000203         2758 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.211, whole genome shotgun sequence.
ACCESSION   DAMQWL010000203 DAMQWL010000000
VERSION     DAMQWL010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.211"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..2579
                     /locus_tag="PF788_002685"
     CDS             <1..2579
                     /locus_tag="PF788_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3427 domain-containing protein"
                     /protein_id="HDG6304914.1"
                     /translation="PKMYGELLKLKNVEVRLTDIAGFHAKGYIFEHKDYSSMVIGSSN
                     LTSNALKVNYEHNVLLSTMKNGDLVDSVKSEFDLLWQKSTPLTEQWINSYKESFEYRS
                     LEKLAEVEQTQMLLADKVKKSVEIVPNLMQAEALRSLKAIRDKAKDKALIISATGTGK
                     TILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPIKNDSDFGLLTGKHRDVDAK
                     YLFATIQTLSRDDNFKQFDENEFDYIVFDEAHRSAASTYQRVFNYFKPKFMLGMTATP
                     ERSDELSIFELFDYNIAYEIRLQAALESDILCPFHYFGVTDYVHQGIKEDDVTKLRYL
                     TSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSV
                     NYRQIVIEKLKEGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLGRGLRK
                     SSNKEYVTVIDFIGNYKTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINFEEV
                     AKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLLMDFIQQHSIDPSVIFSKFSNY
                     YEFLVRYKKIDTLLTENESKNLVFFSRQIAPGLKRIDSLVLEELLKNELTYDELKNKM
                     LNEVKDITEDDIDTSLRILDFSFYNAGIEKIYGSPIIERNERMIRLSDAFTNALSNQT
                     FNMFLEDLIELSKYNNEKYQKGKNGLILYNKYSREDFSKIFNWNKNGSSVIMGYMIKS
                     QEMPIFITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLESKEVQKILSHRAKGIK
                     MYIFVQKKDDDGIYFYYLGTAGYIEGSEKQDKMPNGSNVVTMDLALDKAVRDDIYRYL
                     TN"
BASE COUNT         1097 a          283 c          482 g          896 t
ORIGIN      
        1 gtcctaaaat gtatggagaa ttacttaaat taaaaaatgt agaggtaaga ttaactgata
       61 ttgctggatt ccatgccaaa ggatatattt ttgagcataa ggattatagt tctatggtaa
      121 taggaagctc taatttaaca tctaatgcgt taaaggttaa ttatgagcat aatgttttac
      181 tgtctactat gaaaaatggc gatttagttg atagtgtaaa aagtgaattt gacttgttat
      241 ggcaaaagag taccccactg actgagcaat ggattaattc atataaagaa tcatttgagt
      301 accgttcctt agaaaaatta gcggaggttg aacaaactca aatgctgcta gctgataagg
      361 tgaaaaaatc agtggaaatt gtacccaatt taatgcaagc agaagcatta aggtcattaa
      421 aagctattag ggataaagcc aaagataagg cgttaataat atctgcaact ggtacaggta
      481 aaacgatttt atgtgcatta gatgttagag aagtaaaccc taataaattt ttatttattg
      541 ttcataatga ggggatttta aatagagcta aggaagaatt taaaaaagta ttacctataa
      601 aaaatgatag tgattttgga ttgttgacag gaaaacatag agatgtcgat gccaaatatt
      661 tatttgcaac cattcaaaca ttatctagag atgataattt taagcaattt gatgaaaatg
      721 aatttgatta tattgttttt gatgaagcac atcgttctgc tgcatctact tatcaacgag
      781 tatttaacta cttcaaacct aagttcatgc tgggaatgac tgctacacca gaaagatcag
      841 atgaattaag tatatttgaa ctgtttgatt ataatattgc atatgaaata aggttacaag
      901 cagcattaga aagtgatatt ttatgtccat ttcattattt tggtgtgact gattatgtac
      961 atcaaggtat taaagaagat gatgtaacta aactgagata tttaacttct gatgaaagag
     1021 ttaattatat tattcaaaag acagattact atggatattc aggtgaaatt ttacaaggat
     1081 tgatttttgt aagtagcaaa aaagaagctt atgatttagc ggataaacta agttcaaaag
     1141 ggattaaaag tgttgcttta acaggagatg atagtgttaa ttatcgccaa attgtaatag
     1201 aaaaattaaa agaaggtaag attaactata ttataactgt agatcttttt aacgaaggta
     1261 ttgatattcc agaagtcaat caagttgtaa tgttgagacc aacagagtct agtattatat
     1321 tcattcagca acttggtaga ggattaagaa aaagttcaaa taaagagtat gttacagtaa
     1381 ttgattttat tggtaattat aagacaaatt atttaattcc gattgcgctt tctggggatc
     1441 aatcgcaaaa taaagataat tataagaagt ttttaacgaa taacgattcg attaatggag
     1501 tatctacaat taattttgaa gaagttgcta aaaaacagat ttacaattca ttggatgcag
     1561 tatcattaaa tcaaaataaa ttaatattaa aagcttatga agaagttgaa aatagattgg
     1621 gacacatgcc gttactaatg gatttcatac aacaacattc tatagatcca agcgttatat
     1681 tttctaaatt tagtaattat tacgagttct tagtgagata taaaaaaata gatacattat
     1741 tgacggaaaa tgaatctaaa aatctggttt tcttttcaag gcaaatagca cctggattga
     1801 aaagaatcga tagtttagtt ttagaagaac ttttaaaaaa tgaattaaca tatgatgaat
     1861 taaaaaataa aatgttgaac gaagttaagg atataacaga agatgatata gatacttcat
     1921 taagaatttt agatttttca ttttacaacg caggaattga aaaaatctat ggaagtccca
     1981 ttatagaacg taatgaaaga atgataagac taagcgatgc atttactaat gctctaagta
     2041 atcaaacatt taatatgttt ttagaagatc ttattgaatt atcaaagtat aacaatgaaa
     2101 aataccaaaa aggtaaaaat ggactgattt tatataataa atattcaaga gaagatttta
     2161 gtaaaatatt taattggaat aaaaatggtt cgtctgtaat catgggatac atgataaaaa
     2221 gccaagaaat gccaatattt atcacttatg ataagcatga ggatataagt gatagcacaa
     2281 aatatgaaga tgaattttta agtcaagatg aattaaaatg gtttactaaa tctaatagaa
     2341 cgctagaatc aaaagaagtt cagaaaattt tgtcccatag agcaaaagga attaaaatgt
     2401 atatttttgt acagaaaaaa gatgatgatg gtatatattt ttattattta ggaactgctg
     2461 gatatataga aggttcagaa aagcaagata aaatgccgaa tggttcaaac gtagtaacga
     2521 tggatttagc actggataaa gctgtaagag atgatatata tcgttatcta acaaattaat
     2581 gtaaaccgaa aaatgaatgt tagtaaagtt gtatttaaac atcaatttta ataagtaaat
     2641 acattgagtt tcagtgttat tattttaaat ataagcgcaa tttatcttaa ttaattagtt
     2701 ggttaggcca ataaaaatta taaagatatt tgcgcttttt aaataatttg tgatgttg
//
LOCUS       DAMQWL010000204         2710 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.212, whole genome shotgun sequence.
ACCESSION   DAMQWL010000204 DAMQWL010000000
VERSION     DAMQWL010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.212"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            120..824
                     /locus_tag="PF788_002686"
     CDS             120..824
                     /locus_tag="PF788_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HDG6304915.1"
                     /translation="MKALVLGGSGSIGSEIVKQLLTDGFEVYVQYYRTDINELTSKFN
                     DDKVRFIQADLSQTIDIDKTFGDIKSLDCLIYASGQSLYGVLQDMKDHDIDACYQLNV
                     LQLIRLCRYFVDVLRQSANGRIIVISSIWGETGASMETIYSAMKSAQLGFVKALSQEL
                     ALTSVTVNAIAPGFVAGNMASEWQEDELQAMITELPQQRLVLPSEVAHTCAYLYHPNA
                     RSVTGTIQKVNGAWYI"
     gene            929..1756
                     /locus_tag="PF788_002687"
     CDS             929..1756
                     /locus_tag="PF788_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmfK family protein"
                     /protein_id="HDG6304916.1"
                     /translation="MTVAEKKEWYLEYEIEINRPGLLGDVSSLLGMLGISIVTINGVD
                     QGKRGLLIKTDNLEKVERFEQIARGINEIEITKLKKPELRDRLAVRHGRYIEQDAKDK
                     KTFRFEREDLGLLVDFLAELFKEEGHKLIGIRGMPRVGKTESIVAGSVCAHKRWLFIS
                     STLIKQTVRSSLIKGEYDANHVYIIDGAVTARESNPKHQELVNEVMTLPSIKVVEHPD
                     LFVETSTCTMEDFDYIIELRENENQEIHYEEMKKQTVQSKNNLDFGDPFGGGFGFFE"
     gene            1775..2167
                     /locus_tag="PF788_002688"
     CDS             1775..2167
                     /locus_tag="PF788_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDG6304917.1"
                     /translation="MKTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQL
                     PNKNYSEGFIRKYASVVNIEPNQLIQAHQDEIPSNQAEWDEVITVFNNNKDLDYKSKS
                     KEPIQLLVIMGITVLITLLLWIMLVLIF"
     gene            2201..>2710
                     /gene="pgsA"
                     /locus_tag="PF788_002689"
     CDS             2201..>2710
                     /gene="pgsA"
                     /locus_tag="PF788_002689"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDG6304918.1"
                     /translation="MNIPNQITVFRVVLIPVFILFALVDFGFGNVSFLGGYEIRIELL
                     ISGFIFILASLSDFVDGYLARKWNLVTNMGKFLDPLADKLLVASALIVLVQLGLTNSV
                     VAIIIIAREFAVTGLRLLQIEQGFVSAAGQLGKIKTAVTMVAITWLLLGDPLATLIGL
                     SLGQILLYIG"
BASE COUNT          948 a          321 c          558 g          883 t
ORIGIN      
        1 agcgtgtttg acatgttaga cattgttgaa aatatcacgt tagatagtat taacgaaacg
       61 tcatcgttat atttaaattt agatcagcaa gtcgatagtc gtttggagat taaaaagtaa
      121 tgaaagcatt agtattaggt ggttctggtt caattggttc tgagatagtc aaacaattat
      181 taactgatgg atttgaagtt tatgtgcaat attatcgtac tgatataaat gaattaacta
      241 gcaaatttaa tgatgataaa gttcgtttta tacaagcgga tttatctcaa acaattgata
      301 ttgacaaaac atttggtgac attaaatcat tagactgttt aatatatgca agtggtcagt
      361 ctttatatgg tgttttacaa gatatgaaag accatgatat tgatgcatgt tatcagttaa
      421 atgtcttgca attaattcga ttatgtagat atttcgttga tgttttacgt caaagtgcca
      481 atggaagaat tattgtaatt tcatcaattt ggggtgagac aggagctagt atggaaacta
      541 tttattcggc gatgaaaagt gcacaattag gtttcgttaa ggcgcttagt caagagcttg
      601 cactaacatc agtgacagta aatgctatcg cacctggatt tgtagccggt aatatggcaa
      661 gtgagtggca agaagatgaa cttcaagcaa tgataactga attaccacaa cagcgattgg
      721 ttttaccgag tgaggttgct catacatgcg cctatttata tcacccaaat gctagaagtg
      781 ttactggaac tatacagaaa gttaatggtg cttggtatat ttaaaatata gaactatttt
      841 tatgagcaaa tgtttttatg attgatgtta taatatgaat attacaatga atcataattt
      901 gttaattaaa caaggggtga ggttcaccat gacagttgca gagaaaaaag aatggtacct
      961 agaatacgaa attgaaatta atagaccggg tcttttaggt gatgtatcta gtttattagg
     1021 tatgttaggt ataagtattg ttacaattaa tggtgttgat caaggtaaac gaggcctttt
     1081 aattaaaaca gacaatcttg aaaaagttga acgttttgag caaatagctc gtggtataaa
     1141 tgaaattgaa ataacaaagc ttaaaaaacc agaattaaga gaccgtcttg cagtaagaca
     1201 tggaagatat attgagcaag atgcaaaaga taagaaaacc tttcgatttg agcgtgaaga
     1261 tttaggcttg ttagtagact ttttagctga attgttcaaa gaagaaggtc ataagttgat
     1321 tggcattaga ggtatgccac gggttggtaa aactgaatca attgttgcgg gaagtgtttg
     1381 tgcacataag agatggttat ttattagttc tactttaata aaacaaactg tacgtagctc
     1441 tctaattaaa ggggaatatg atgccaatca tgtatacatt attgatggtg cagttactgc
     1501 cagagaatct aatccaaaac atcaagagct tgttaacgaa gttatgacgt taccatcaat
     1561 caaagtcgtt gaacatccag atttatttgt tgaaacaagt acttgtacaa tggaagattt
     1621 tgactatatt atcgaattga gagaaaatga aaatcaagaa atacattacg aagaaatgaa
     1681 gaaacagaca gtccaaagta agaataattt agattttgga gatccgtttg gtggtggttt
     1741 tggtttcttc gagtaagtgt aaggaggcta tgaattgaaa acggtcggtg aagcgctaaa
     1801 aggtagacgt gaaaggttag gaatgacttt aacagaatta gagcaacgta ctggaattaa
     1861 acgtgaaatg ctagtgcata ttgaaaataa tgaattcgat caactaccga ataaaaatta
     1921 cagcgaagga tttattagaa aatatgcaag cgtagtaaat attgaaccta accaattaat
     1981 tcaagctcat caagatgaaa ttccatcgaa ccaagccgaa tgggacgaag taattacagt
     2041 tttcaataat aataaagact tagattataa gagtaaatca aaagagccaa tacaattatt
     2101 agtaatcatg ggtattacag ttttaataac tttattgtta tggatcatgt tagttttaat
     2161 attttaacag aaataaatta gtgagaaatg aggatgtata atgaatattc cgaaccagat
     2221 tacggttttt agagtagtgt taataccagt ttttatattg tttgcgttag ttgattttgg
     2281 atttggcaat gtgtcatttc taggaggata tgaaataaga attgagttat taatcagtgg
     2341 ttttattttt atattggctt cccttagcga ttttgttgat ggttatttag ctagaaaatg
     2401 gaatttagtt acaaatatgg ggaaattttt ggatccatta gcggataaat tattagttgc
     2461 aagtgcttta attgtacttg tgcaactagg actaacaaat tctgtagtag caatcattat
     2521 tattgccaga gaatttgccg taactggttt acgtttacta caaattgaac aaggattcgt
     2581 aagtgcagct ggtcaattag gtaaaattaa aacagcagtt actatggtag caattacttg
     2641 gttgttatta ggtgatccat tggcaacatt gattggtttg tcattaggac aaattttatt
     2701 atacattggc
//
LOCUS       DAMQWL010000205         2669 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.213, whole genome shotgun sequence.
ACCESSION   DAMQWL010000205 DAMQWL010000000
VERSION     DAMQWL010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.213"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            71..247
                     /locus_tag="PF788_002690"
     CDS             71..247
                     /locus_tag="PF788_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkvS family protein"
                     /protein_id="HDG6304919.1"
                     /translation="MTVAEVGNIVEFMDGLRGRVEKINDNSVIVDLTIMENFNDLDLP
                     EKTVINHKRYKIVE"
     gene            262..864
                     /locus_tag="PF788_002691"
     CDS             262..864
                     /locus_tag="PF788_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDG6304920.1"
                     /translation="MNKISKALTWFIISFIIFHLILFIMWGEHQEYWYLYTGIMLIAG
                     ISYVFYQRDIESKRLLTSIGVGIITAIILIMLQLLFSLITSNLSYSSLIKELARTGVN
                     WKWQMLVTLLFVIPCHELYMRTVLQKELTHFSIPKWVAILITAICSSSLFIYLDNWWI
                     VTFIFVAQVILSLSYEYTRRIATTSVAQIVAIILLLIFNA"
     gene            1097..1242
                     /locus_tag="PF788_002692"
                     /pseudo
     CDS             1097..1242
                     /locus_tag="PF788_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500662.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
     gene            1781..1882
                     /locus_tag="PF788_002693"
     CDS             1781..1882
                     /locus_tag="PF788_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304921.1"
                     /translation="MKFAANKLTLTIFRKFCINNEKEIWIKYEEVFL"
     gene            1892..2164
                     /locus_tag="PF788_002694"
     CDS             1892..2164
                     /locus_tag="PF788_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001790097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactococcin 972 family bacteriocin"
                     /protein_id="HDG6304922.1"
                     /translation="MFGTILYLTLALGLSTAAYASTEYAEGGTWSHGVGSKYVWSYYY
                     HGHKGHGATAIGKYRSFSGYTRAGVKAKASATKHNWWVNRAYYNIY"
     gene            2208..>2669
                     /locus_tag="PF788_002695"
     CDS             2208..>2669
                     /locus_tag="PF788_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin-associated integral membrane family
                     protein"
                     /protein_id="HDG6304923.1"
                     /translation="MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDW
                     NKKYSKNEIYKRIDQFAKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKY
                     NIHYLSDDEVLKKDIKGSYFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMI"
BASE COUNT          966 a          319 c          435 g          949 t
ORIGIN      
        1 tgttaatagt ttatttgtta agtgaatttt agtacaatat aatttagtta tgatttaagg
       61 aggacttaaa atgactgttg cagaagtggg taacattgtt gagtttatgg atggattaag
      121 aggtcgtgtt gaaaaaatca acgataactc tgttattgtt gacttaacaa ttatggaaaa
      181 ttttaatgac cttgatttac cggaaaaaac tgttatcaat cataaacgat ataagattgt
      241 tgaataagaa ggtaagttat aatgaataaa atctcgaagg ctttaacttg gtttattata
      301 agtttcatta tatttcatct catattattt attatgtggg gcgaacacca agaatactgg
      361 tatttatata caggtataat gctaattgct ggtatcagtt atgtatttta tcaaagagat
      421 attgaatcta agcggttgct tacatcaatt ggtgttggta ttattacggc aattatttta
      481 attatgcttc aacttttatt ctcacttata acttctaatt taagttatag ttcattaatt
      541 aaagaattag caagaacagg tgtcaattgg aagtggcaaa tgttagtaac tttacttttt
      601 gtcattccat gtcacgagtt atatatgaga actgttttac aaaaagaatt aacacatttt
      661 tcaataccga aatgggtagc tatattaata actgcaattt gttctagttc attatttatt
      721 tatttagata attggtggat agtaacattt atatttgttg cacaagtgat attatcatta
      781 agttatgagt atactcgacg tatagcaaca acatccgttg cacaaattgt agctattata
      841 ttgttattaa tttttaatgc ttaaataagc ttttcttaga cgtatgtgtt ctaagaaaag
      901 cttttttgct taagaatagc aatacgaaga ttcgaggcat gcttcattat agtggtaata
      961 ttttttaaca gcaagcggtt attattgaga ttaggtttta gtcagttttt attactaaat
     1021 attttataaa aatggtataa tatttttgag caagttgaat tgatggtggc tatctgagta
     1081 aaggggggtg gtgcctatgg cattacttaa cacttttgaa aggaaaagcc tattgtgata
     1141 tctattgcaa acgcattaca tttaatgtta agtttcggta tgtttatcgt cactttcatt
     1201 ggtatagtag tagcaataat aaatttaagc aataaaaaat aaccatcatt tcaaaacttt
     1261 gacatagaat gatggttaaa gaaaatctca tttagtcacc gtctttttaa cgggctcatt
     1321 aggcgacatg ttcctgcatg tcgtcttttt acatttttat agtaacatat cttttattta
     1381 attgtctatt tttattagat gtgtaacaaa attttgaagt attttccgta tattgcctgc
     1441 taaacatgtc agatttgaaa ggaaaatcat actgtggtag aaatcaatta tgattatatg
     1501 gtagtactta taaataagtg atttctattg aatatgtaat gaagttcata tattaatata
     1561 actttcattg atatagaagt cgcaatgatt aatttaaaca ataaaaaaca accatcattt
     1621 ccaaactttg acaacgaatg atggttaaag aaaatctcat ttagtcaccg tctttttaac
     1681 gggctcaata ggcgacatgt tcctgcatat cgtctattta tacactgcac aatttaataa
     1741 taatacaatt atactttgat gtccatttaa cataaagtgg ttgaaatttg cagcaaataa
     1801 attaaccttg actattttca gaaaattctg tataaataac gaaaaagaga tatggattaa
     1861 atatgaagag gtgtttttat agaagaataa aatttttggc actatattat atttaacttt
     1921 agcacttgga ttatcaacag cagcttatgc atctacagaa tacgcagaag gaggcacttg
     1981 gagtcatggt gtcggcagta agtatgtttg gtcgtattat tatcatggtc ataaaggaca
     2041 tggtgcaaca gctattggaa aatatagatc atttagtggt tatacaagag ctggtgtaaa
     2101 agcaaaagca tcagctacta aacataattg gtgggtcaat agagcgtatt ataacattta
     2161 ttaaatacta aaaaatcata gaaaataaac aacgcaagag gtacaacatg aaatggttca
     2221 aattaatact tgatgttaca atcttcattc tgattgctat attgttattt gtttatacat
     2281 ataaagaaaa cgaagaaata ttgcctgata ctaaataccc tatagcggta actgactgga
     2341 ataaaaaata tagtaaaaat gagatttata aacgtataga tcaattcgct aaaaatgaga
     2401 acgtagcaat ctataaatca acttcaaatt atacaaacaa aaacgtagat aaagatatat
     2461 atgtatttaa taaatcaaaa gcagcaacta tcactccttt taatgctaaa tataacattc
     2521 attatttaag tgacgacgaa gtattaaaaa aagatatcaa agggagttat tttgtaaaag
     2581 acaaaaattt tgacgtgtct aaattcataa attttttaaa agaatatggt gttactgctg
     2641 aatcatacaa aatagatcat atgatgatt
//
LOCUS       DAMQWL010000206         2647 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.214, whole genome shotgun sequence.
ACCESSION   DAMQWL010000206 DAMQWL010000000
VERSION     DAMQWL010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.214"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..237)
                     /locus_tag="PF788_002696"
     CDS             complement(<1..237)
                     /locus_tag="PF788_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HDG6304924.1"
                     /translation="MNKPFIAIEGPIGVGKSSLAHKLSQTLDFYEEKEIITENPFLSD
                     FYEDISKWSFQTEMFFLCNRYKQFQDVTQLNQGVV"
     gene            304..774
                     /locus_tag="PF788_002697"
     CDS             304..774
                     /locus_tag="PF788_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HDG6304925.1"
                     /translation="MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLR
                     ETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGA
                     DDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKKSTN"
     gene            921..1790
                     /locus_tag="PF788_002698"
     CDS             921..1790
                     /locus_tag="PF788_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDG6304926.1"
                     /translation="MIKLIATDMDGTLLNAAHEISQPNIDAIKYAQEQGITVVIATGR
                     AFYEAQAPVADTDLTVPYICLNGAEVRDETFNVMSTSHLNKSLVHKITNVLKDAGIYY
                     QVYTSRAIYTEDPQRDLDIYIDIAERAGQHANVERIKNGIQRRIDNGTLKVVDNYDAI
                     ENIPGELIMKILAFDGNLEKIDKASKILAESPNLAISSSSRGNIEITHSDAQKGIALE
                     TIAERLGIEMKEVMSIGDNLNDLSMLEKVGYPVAMENGAEEVKKIAKYVTDTNENSGV
                     GKAIMKLLREQQV"
     gene            1811..2377
                     /locus_tag="PF788_002699"
     CDS             1811..2377
                     /locus_tag="PF788_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDG6304927.1"
                     /translation="MKGLIIIGSAQVNSHTSALARYLTEHFKTHDIEAEIFDLAEKPL
                     NQLDFSGTTPSIDEIKQNMKDLKEKAMAADFLILGTPNYHGSYSGILKNALDHLNMDY
                     FKMKPVGLIGNSGGIVSSEPLSHLRVIVRSLLGIAVPTQIATHDSDFAKNEDGSYYLN
                     DSEFQLRARLFVDQIVSFVNNSPYEHLK"
BASE COUNT         1012 a          351 c          475 g          809 t
ORIGIN      
        1 aactacacct tgatttagtt gtgttacatc ttgaaattgc ttatatctat tgcataaaaa
       61 gaacatttca gtttgaaaac tccatttaga gatatcttca taaaagtctg ataaaaatgg
      121 attttctgtg atgatttctt tttcttcata aaaatctaaa gtttgactta atttgtgtgc
      181 aagtgaagat ttacctacgc caataggacc ttcaattgct ataaaaggtt tgttcatatt
      241 cacatctcca aatgttaaaa tagacattga gtattgtacc ataagtgagg tatctggaca
      301 taaatgacaa atgatatata ttttatgaca ttagcgattg aagaagctaa aaaagcagct
      361 caactaggcg aagtacctat aggtgctatc atcactaaag atgatgaagt tatcgctaga
      421 gcacataatt taagagaaac actacaacaa ccaacggcgc atgctgaaca tattgcaatt
      481 gaacgtgcag ccaaagtgtt aggtagttgg cgtttagaag gttgcacatt atatgtaacc
      541 ttagaaccat gtgtcatgtg cgcaggaaca attgtaatga gtcgcattcc aagagtcgtc
      601 tatggcgcag atgatcctaa aggtggttgt agtggcagtt taatgaattt attgcaacaa
      661 tctaatttta atcatcgtgc aattgttgat aaaggtgtac ttaaagaagc atgtagcaca
      721 ttattaacaa cattttttaa aaacttaaga gccaataaga aatccaccaa ttagacgata
      781 gtacatacta attaaaattt gttagaatta cattatatga taaattaatg acaatataaa
      841 tgttaataga aaagtatgtg cgctgagtat atattcttat ttaagaacaa gattttaaat
      901 ttacgaaacg aggtaacata atgataaaac taatagccac tgatatggat ggcacgctac
      961 ttaatgcagc acatgaaatt tctcaaccta atattgatgc gattaaatac gctcaagaac
     1021 aagggataac ggttgttatc gcgacaggtc gagcatttta tgaagcacaa gcaccagttg
     1081 ctgacacaga tttaacagta ccatatattt gtttgaatgg tgctgaagta cgtgatgaaa
     1141 ctttcaatgt aatgagcact tcacacctta ataaatcgtt agtacacaaa attacaaatg
     1201 ttttaaaaga tgcaggtatt tattatcaag tatacacgag tcgtgcgatt tatactgaag
     1261 atccacaaag agatttagac atttacatag atattgctga gcgtgcaggt caacatgcaa
     1321 acgttgagcg tattaaaaat ggtattcaaa gacgcataga taatggtacg ttgaaagttg
     1381 ttgataatta tgatgctatt gaaaacatac ctggtgaatt aattatgaaa atattagcat
     1441 ttgatggaaa tttagaaaaa attgacaaag ctagtaaaat tttagctgaa tctccgaatt
     1501 tagctatatc atcatcttcg agaggaaata tagaaataac gcattcagat gcacaaaaag
     1561 gtattgcgct agaaacaatt gccgaaagat tagggattga aatgaaagaa gtcatgtcaa
     1621 taggtgacaa tttaaatgac ttatcaatgt tagagaaagt tggctatcca gttgcgatgg
     1681 aaaatggtgc agaagaagtt aaaaaaatag cgaaatatgt cacagatacg aatgaaaata
     1741 gtggtgttgg aaaagctatt atgaaattat tacgtgaaca acaagtttaa taaaaaaaga
     1801 ggggtcaaat atgaaaggat taattattat tggcagtgca caagtgaatt cacatacaag
     1861 tgcactagca agatacttaa ctgagcattt taaaacacat gatattgaag cggaaatatt
     1921 cgatttagca gaaaaaccgt taaatcaatt agatttttca ggaacaacac cgtctattga
     1981 tgaaatcaaa caaaatatga aagatttaaa agagaaagca atggcggcgg actttttaat
     2041 attaggaacg ccaaactatc atggttcata ttctggaata ttgaaaaatg cattagatca
     2101 tctaaatatg gattatttta aaatgaaacc tgtaggctta ataggaaata gtggtggtat
     2161 tgttagttca gagccattgt cacatttaag agtaatcgtc agaagtttac taggcattgc
     2221 tgtaccaact caaatagcaa cacatgattc tgattttgct aaaaatgaag atggttcata
     2281 ttacttaaat gatagtgaat tccaattacg agcaagatta tttgtcgatc aaattgtatc
     2341 ttttgtgaat aatagtccat atgaacattt aaaataatat taaaaaatat gtaaatatac
     2401 attaaaaata ggtatgtagc ttaaggtatt tcattgagaa tgcttttaag tcacatgcct
     2461 attttttgtt ctaatgcacc aatagtaagc ctttgatatt actgttgtga gcaatgttat
     2521 taattaaaat aagatgtaat agcgaattga aaacaagctt agattaaaag tgagttttaa
     2581 aaatatagat aaataattta aagcaattaa agaaaaaaag tattaaaaat tgcaattctt
     2641 aaactgt
//
LOCUS       DAMQWL010000207         2623 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.215, whole genome shotgun sequence.
ACCESSION   DAMQWL010000207 DAMQWL010000000
VERSION     DAMQWL010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.215"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..735
                     /locus_tag="PF788_002700"
     CDS             <1..735
                     /locus_tag="PF788_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HDG6304928.1"
                     /translation="WVTNFSNEKALVNAKLLVDNYNSEIDRLIDILDSRERINLVNKD
                     ETFISWTRGLTQKFSKGKNISINPERIVKFMHRPFTKKWIVYDKNIMEMPSRYYNIME
                     NTGQVIYIQGQGMNKEFSAMITDILPNFQFIGNGKGFATYKGKDSLRLVDNISNSFKK
                     KINLNSEEIVYYIYAILHHKYYVNKYSSDLSKGFPRIPILKDVYGFVEIGRELVELHL
                     NYEKQLNWDGVEIIYNNMNPNYKVEK"
     gene            756..1025
                     /locus_tag="PF788_002701"
     CDS             756..1025
                     /locus_tag="PF788_002701"
                     /inference="COORDINATES: protein motif:HMM:NF037202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HDG6304929.1"
                     /translation="MDTVIYNTDITVTNIPNKVYNYIVNGKPAIEWIIDQYNVSIDKK
                     SGILDDPNEFSEDPNYILNLLLSVITVSMKTLGLIDKLPDFEVLD"
     gene            1086..1829
                     /locus_tag="PF788_002702"
     CDS             1086..1829
                     /locus_tag="PF788_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000365049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304930.1"
                     /translation="MDLLQIEKKGNLTKTVQLMHDEKGSASGESKVNMEFGKQSAVKQ
                     IFDSLLGMSASASASAGINGNITGERVAKTILENTLIYDFLDTVEFRKKKTIIDISEG
                     FKLNIQQDTMTYFATITPIASMFEGSKHLDEEELSFDVSKMNEAIRSIKGYFELIGTR
                     GNENRVFRFNIESFKNNYRIQDLKFMNLTLYSVLVGEISKENLNYDKEFDLNQGAKPS
                     GIGKFKGIRSEATKEDKYQVYDVILAGVK"
     gene            1830..>2623
                     /locus_tag="PF788_002703"
     CDS             1830..>2623
                     /locus_tag="PF788_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDG6304931.1"
                     /translation="MEIHVYTGPLCGFNEYINSEVKEYHRFMELIREYNIIVRASDTF
                     GTHDVDGIFDTEIENLVIFSNDFASVTTHVITNFINIVTLGRNIKKIYIQNPPKRVFQ
                     SLNSFHDSEIIEINYEYTTLKKDDVINFYKEQMAGSKIIGQTDAKKQMSIDLYKHTSL
                     ENNKPTVMLYYGPSGVGKTELAKEIAKKYKGNITRIQFSMMQNDESFNYIFGDEHAKV
                     SLSKDLVDRETNVVLIDEFDKVLPIYYNVFYQMFDEGIIEDANYKV"
BASE COUNT         1051 a          289 c          463 g          820 t
ORIGIN      
        1 tgggtaacaa atttttcgaa tgaaaaagca ttagtaaatg caaaattact tgtagataac
       61 tataattctg aaatagatag attaattgat atcttagatt caagagaacg tataaattta
      121 gtgaacaaag atgaaacatt tattagttgg acacgaggac ttacccaaaa attttctaaa
      181 ggaaaaaata tttcaattaa tccagagaga attgttaaat ttatgcatag accatttaca
      241 aaaaaatgga tagtgtacga caaaaatatt atggaaatgc caagtagata ttataatata
      301 atggagaata ctggacaggt gatttatata caaggacagg gaatgaataa agaattctcg
      361 gctatgatca cggacatatt acctaatttc caatttattg gtaatggcaa aggctttgct
      421 acatacaaag gtaaagatag tttgaggctt gtagataata tttctaattc ttttaaaaag
      481 aaaataaatc ttaattcaga agagatagta tattatatat atgcaatttt gcatcataaa
      541 tattatgtga acaaatattc aagtgatttg agtaaaggtt ttccgcgaat accgatatta
      601 aaggatgtat atggatttgt tgaaattggt agggagttag tggaattaca tttaaattat
      661 gaaaaacaac tcaattggga tggtgtagaa ataatttata ataatatgaa tccgaattat
      721 aaagttgaaa aatgaagcac cctaaaaagg gcgtgttgga tacagtaata tacaataccg
      781 atattacagt tactaacatt ccaaataaag tatataatta tattgtgaat ggcaagcctg
      841 ctattgaatg gattatagat cagtacaacg taagcatcga caagaaatct ggaatattag
      901 atgatcctaa tgaatttagt gaagatccga attacatttt aaatctgctt ttatcagtta
      961 ttactgtaag tatgaaaact cttggattaa tagataaatt accagatttt gaagtattag
     1021 attaaggaga ggatatattg acaaatacta tcaaaaaaat aatttatttt gatgaactat
     1081 cagcaatgga tttattacag atagagaaga aaggtaacct tactaaaaca gttcagttga
     1141 tgcatgatga aaaaggtagt gcaagtggtg aatctaaagt gaacatggaa tttggtaagc
     1201 aaagcgctgt aaaacaaatt tttgattctt tacttgggat gtcagcgagt gcttcggcta
     1261 gtgcaggtat aaatggaaat ataactggag agcgagtagc caaaacaatt ttagagaata
     1321 cattaatata tgattttttg gatacagtag agtttagaaa gaaaaaaact attattgata
     1381 tttcagaggg gtttaaacta aatattcaac aagatacgat gacatatttc gcgactatta
     1441 cccccatagc aagtatgttt gaaggatcta aacatctaga cgaggaggag ctatcatttg
     1501 atgtttcaaa aatgaatgaa gcgattagaa gtattaaagg ctattttgaa ttaataggaa
     1561 caagagggaa tgaaaacaga gtttttagat ttaatataga atcttttaaa aataactata
     1621 gaatacaaga tttaaaattt atgaatttaa cactctactc agtacttgtt ggtgaaataa
     1681 gcaaagaaaa tctaaattac gataaagagt ttgatctaaa tcaaggtgcc aaacctagtg
     1741 gaattggaaa gtttaaggga attagatcag aagcaactaa agaagataaa tatcaagtgt
     1801 atgatgttat tcttgcagga gtgaaataaa tggaaattca tgtttatacg ggaccgcttt
     1861 gtggatttaa tgaatatatt aattctgaag ttaaagaata tcaccgcttc atggaattaa
     1921 tcagagaata caatatcata gtgcgagcaa gtgatacatt tggaactcat gatgttgatg
     1981 gtatttttga tactgagata gaaaatcttg tgatattttc aaacgacttt gcttctgtaa
     2041 caactcatgt tattactaat tttataaata tcgttacttt aggtagaaat attaagaaaa
     2101 tctatattca gaatcctcca aaaagagtat ttcaatcact aaatagtttt cacgattctg
     2161 aaataataga aataaactat gaatatacaa cattaaaaaa agatgatgta ataaattttt
     2221 ataaagagca gatggctggt tctaaaataa taggtcaaac agacgctaaa aaacaaatga
     2281 gcatagattt atataaacat acttccttag aaaataataa accgaccgta atgctttact
     2341 atggtccatc aggtgttgga aaaacagaat tagccaaaga aatagcaaaa aaatataaag
     2401 gtaatatcac tagaatacaa ttttctatga tgcagaatga tgaatctttt aattatatct
     2461 ttggagatga acatgccaaa gtatcattgt caaaagattt agtagatcgt gaaactaatg
     2521 ttgttttaat tgatgaattt gataaggtat taccaatcta ttacaatgtt ttctatcaaa
     2581 tgtttgatga aggtattatt gaagatgcca attataaagt aga
//
LOCUS       DAMQWL010000208         2599 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.216, whole genome shotgun sequence.
ACCESSION   DAMQWL010000208 DAMQWL010000000
VERSION     DAMQWL010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.216"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..246
                     /locus_tag="PF788_002704"
     CDS             <1..246
                     /locus_tag="PF788_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6304932.1"
                     /translation="LSDEYIRKLKLDKDDLVIQKNHNGTIKIITSNVNDTILYLQQLH
                     INLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLENRI"
     gene            215..946
                     /locus_tag="PF788_002705"
     CDS             215..946
                     /locus_tag="PF788_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6304933.1"
                     /translation="MILSYLKIEFKVIMRKKTTLILSILFPVIFYILFTSILELPEDV
                     KPKFYKEYMYSMTVYSLLSFSLLTFPLDIINEKQNEWRQRLMVTPFTFTSYYISKVVK
                     TMLQFAIAILVIFMVGHFYKGVAMSAVQWLESGIFLWLGASLLITFGILFSLLNDIQK
                     TSALANIVTIGLAVLGGLWFPINTFPNWLQHVAHVLPSYHLRKLGVDIASNHHINLIS
                     FAIILLYALGSIIAVYCISHFKRAE"
     gene            950..2041
                     /locus_tag="PF788_002706"
     CDS             950..2041
                     /locus_tag="PF788_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDG6304934.1"
                     /translation="MKFLKDTSIAEISSIVYLIFPIAGIFFNEVYGPKWLYIISVIVF
                     SLSYLILVIVNNRLNTLMFYILLIIHYFIICYFVFSVHPMLSLFFFYSAFAVPFTFKN
                     NVKKTATNLFILTMIICTIITYLLYNNYFVAMMVYYVVISLIMLDNFKKMKNREYQKE
                     IAEKNRHINTLIAEQERHRIGQDLHDTLGHVFASLSLKSELAYKLIDADVEKVKAELL
                     AINKLSRESLNKVREIIDDVKLPSFIEEIDSIRKVLKDADIDFTFENKELAQVLSPTK
                     QSMLVMITREAINNVIKHANASKVHGKLKTVNNHKLLLMIEDDGKGIDSDCEVKSISQ
                     RVQHLNGTLAVDSTNGTKIIIEISTGGIA"
     gene            2038..>2599
                     /locus_tag="PF788_002707"
     CDS             2038..>2599
                     /locus_tag="PF788_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDG6304935.1"
                     /translation="MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE
                     EYNPNVVFLDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYV
                     LKERSIEELVETINKVNNGEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEI
                     SEKLFLTDGTVRNYTSVIIDKLFADNR"
BASE COUNT          961 a          292 c          418 g          928 t
ORIGIN      
        1 ttatccgatg aatatataag aaagttaaaa ctagataaag atgatttagt tattcaaaaa
       61 aatcataatg gcactatcaa aattattact tcaaatgtaa atgatacgat tttatatctt
      121 caacaacttc atattaattt ggatgatatt gaaatacaaa aagtctcaat tgttgattca
      181 tacttcaaca ataaaaagca aaggggatct aattatgata ctaagttact tgaaaatcga
      241 atttaaagtt ataatgcgta aaaaaacaac attaatatta tctattttat ttcctgttat
      301 attctatata ttatttactt cgatattgga attgccggaa gatgttaaac ctaaatttta
      361 taaagagtat atgtatagta tgacggttta tagtttgtta agttttagtt tactaacttt
      421 tccattagat attattaatg aaaaacaaaa tgaatggcgc caaagattaa tggtaacacc
      481 atttactttt actagttatt atatttcaaa agtagtgaaa actatgctgc aatttgcaat
      541 agcgatatta gttattttta tggttggaca tttttataaa ggtgttgcaa tgagtgcagt
      601 tcaatggtta gagtcaggaa tatttttatg gttaggtgcg tctctattaa taacttttgg
      661 catattattt tctttgttaa atgatattca aaaaacaagt gctttagcta atatcgtaac
      721 aattggttta gcagtattag gtggattgtg gtttccgata aacacatttc caaattggct
      781 tcaacatgtt gctcatgttt taccgagcta tcatttgcgt aaactaggtg tagatattgc
      841 ttcaaatcat catatcaatt taatatcatt tgctataata ctcttgtatg ctttagggag
      901 tataatagca gtatattgta ttagtcattt taaaagggcg gaataaaata tgaaattttt
      961 aaaagatact tcaattgctg aaatatcgtc tatagtttat ctgatttttc ctattgccgg
     1021 tatatttttt aatgaagtat atggtcccaa atggttgtat attatatcag tcattgtctt
     1081 ttcgttgtcg tatcttatat tagttatagt aaataataga cttaatacat taatgtttta
     1141 cattttgttg attattcatt attttattat ttgttatttt gttttcagtg tacatccaat
     1201 gctaagtttg tttttctttt atagtgcttt tgccgttcca tttactttta aaaataatgt
     1261 taaaaaaacg gcaactaatc ttttcatact aacaatgatt atatgtacaa taataacgta
     1321 cttattgtat aacaactatt ttgttgcaat gatggtttat tatgtcgtta tatcgttaat
     1381 aatgctagat aattttaaaa aaatgaaaaa ccgtgaatat caaaaagaaa tagcagaaaa
     1441 aaatagacat attaatacat taattgctga acaagagcga catagaattg gtcaagactt
     1501 acatgatacg ttagggcatg tgtttgcaag tttatcatta aaatcagaat tagcttataa
     1561 actaatagat gctgatgtag aaaaagtaaa agctgaatta ttagcaatta ataaattatc
     1621 tcgtgaatca ttgaacaaag ttcgagaaat tattgatgat gtaaaattac catcatttat
     1681 tgaagagatt gatagtatac gtaaagtttt aaaagatgct gatattgatt ttacatttga
     1741 aaataaagaa ttagcgcaag tattaagtcc tactaaacaa tctatgttag ttatgattac
     1801 gcgtgaagcg ataaataatg ttattaaaca tgcaaatgct tcaaaagttc atggtaaatt
     1861 aaaaactgta aacaatcata aattactgct tatgattgaa gatgatggca aaggtatcga
     1921 tagtgattgt gaggtgaaaa gtatttcaca gcgtgtacaa catttaaatg gaactttagc
     1981 agtcgactca acaaatggaa ctaaaataat cattgaaatc tcaacaggag gaatagcatg
     2041 acatctttaa ttattgcaga agatcaaaat atgttacgac aggcaatggt tcaattaatt
     2101 aaactacatg gtgattttga aattttagca gatactgata atggtctcga tgcaatgaaa
     2161 cttattgaag aatataatcc taacgttgtt tttttagata tagaaatgcc aggcatgact
     2221 ggacttgaag ttttagcgga aattagaaaa aagcatttga atattaaagt gattattgta
     2281 acaactttta aaagaccggg atactttgaa aaagcagttg tgaatgatgt ggatgcatat
     2341 gttttaaaag aacgttctat agaagaattg gtggaaacca ttaataaagt aaataacgga
     2401 gagaaagaat atagcgccac attgatgact tcattttttg tagataaaaa cccattaacg
     2461 cccaaagaac aaattgtatt aagggaaatt ggcaatggtt taagtagtaa agaaataagt
     2521 gaaaaattat ttttgacaga tggaacagtt agaaattata catctgttat aattgataaa
     2581 ttatttgcag ataatcgtt
//
LOCUS       DAMQWL010000209         2574 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.217, whole genome shotgun sequence.
ACCESSION   DAMQWL010000209 DAMQWL010000000
VERSION     DAMQWL010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.217"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(214..411)
                     /locus_tag="PF788_002708"
     CDS             complement(214..411)
                     /locus_tag="PF788_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304936.1"
                     /translation="MNCYDEIFNTIKELIENKEISSYQINKDTGISYGNINAMRRRER
                     RIENLSLKNAKILYEYAKKVL"
     gene            complement(904..2244)
                     /gene="glnA"
                     /locus_tag="PF788_002709"
     CDS             complement(904..2244)
                     /gene="glnA"
                     /locus_tag="PF788_002709"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDG6304937.1"
                     /translation="MPKRTFTKDDIRKFAEEENVRYLRLQFTDILGTIKNVEVPVSQL
                     EKVLDNEMMFDGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTD
                     GTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFD
                     LAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKL
                     VVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFFDPNTEMGLTETAYQF
                     TAGVLKNARGFTAVCNPLVNSYKRLVPGYEAPCYIAWSGKNRSPLIRVPSSRGLSTRI
                     EVRSVDPAANPYMALAAILEAGLDGIKNKLKVPEPVNQNIYEMNREEREAVGIQDLPS
                     TLYTALKAMRENEVIKKALGNHIYNQFINSKSIEWDYYRTQVSEWERDQYMKQY"
     gene            complement(2263..>2574)
                     /locus_tag="PF788_002710"
     CDS             complement(2263..>2574)
                     /locus_tag="PF788_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDG6304938.1"
                     /translation="SKLTDLTPRQIRYYETHELIKPERTEGQKRLFSLNDLERLLEIK
                     SLLEKGFNIKGIKQIIYDSQEHLTTDEQEIRKKMIVDATQKPIGETLPINRGDLSRFI
                     K"
BASE COUNT          793 a          472 c          364 g          945 t
ORIGIN      
        1 acatcttgta taaaaagaaa gaactccata tatactcaaa aggtatactg aagctctata
       61 tattatataa aattattata ctattttgaa aaacataagt aaatcactaa acatgatttc
      121 tttcactttt agaaaacttt taatactata aaagcaccca ctcagtcact agtttgggca
      181 gttattgtat gcctattgaa ctcaatgctt atattacaat acctttttcg catattcata
      241 taagatcttt gcattcttta agcttaaatt ttctattctt ctttctctac ggcgcatagc
      301 attaatatta ccgtaactta tcccagtatc tttattaatt tgataactcg atatctcttt
      361 gttttctatc aattctttga ttgtattgaa tatttcatca tagcaattca taaattagat
      421 gaggcgaaat ttttaatttt ttagaatatc aatagtagta taactaaaat gaaaataccg
      481 atcgataaac aaaaagatat tttttgtttt gtttctcttt tcatatagta ttaccccctt
      541 aataatgcgt agtaaggtcc ctcttttcgg ggtcttacct tagaacgttc tgcaaatgaa
      601 ttcgatgaga agtaatatga atatggctat tttcaagtaa tactcaacgt tttcgcgacg
      661 ttcttttatc gcctcatctc atcacctcca aatatattaa aattcatgtg aactaaaata
      721 taaaatggtc ttccccagct ttaaaaaaat aaatacataa aacatttact tgaccaaaac
      781 ttgaccaaat ccatttttta acaaaagtgg tcaagtgaaa tcccatcttt ccaaatcaaa
      841 aaagagctaa agcaaaatgc tctagccctt gatattactg atttcccatc attgtttagc
      901 gtattaatat tgcttcatgt actgatctct ttcccattca gagacttgag ttctgtagta
      961 atcccattca attgattttg aattaataaa ttgattatag atatgatttc ctaaagcttt
     1021 tttaataact tcattttcac gcattgcttt taatgcagta taaagtgttg aaggtaagtc
     1081 ttgaatgcct actgcttcac gttcttcacg gttcatttcg taaatatttt ggttaactgg
     1141 ttctggaact tttaatttat ttttaatacc atctagtcca gcttctaaga ttgcagctaa
     1201 cgccatgtat gggtttgcag ctggatctac tgaacgtact tcgatacgag tagataatcc
     1261 tcttgaagat ggtacacgga ttaatggtga acggttttta ccactccatg caatataaca
     1321 tggtgcttca taaccaggta ctaaacgttt atatgagttt actaacgggt tacatacagc
     1381 agtaaatccg cgtgcatttt taagcacacc tgctgtaaat tgatatgcag tttccgttaa
     1441 gcccatttca gtatttggat caaagaatgc attttcttta cctttgaata atgaaacgtt
     1501 aaagtgcata ccgctaccat tcacaccgaa taatggttta ggcataaatg ttgcgtgtaa
     1561 attatgttta cgtgcgattg ttttaacaac caatttaaat gtttggatat tatcacatgc
     1621 tgtaacagca tctgcatatt taaagtcaat ttcatgttga ccaggggcaa cttcatggtg
     1681 actagcttca atatcgaagc ccatatcctc taattctaaa acaatatcac gacgacagtt
     1741 ttcacctaaa tctgtaggtg ctaaatcgaa atatccacca tcatcattaa gttctaaagt
     1801 tggttcccct ttttcatcca acttaaacaa gaagaattct ggttcaggcc ctaggttaaa
     1861 gtctgtgaag cctaaatctt ccatttcttt taatacacgt tttaagtttg cacgaggatc
     1921 cccttcaaat ggtgttccat ctgttttata tacatcacaa attaaacgtg caactttacc
     1981 ttgtccagca gtccatggga agattaccca agtatctaaa tctggatgta agtacatatc
     2041 tgattcttcg atacgtacga aaccttcgat agaagaaccg tcaaacatca tttcgttatc
     2101 aagtactttt tctaattggc ttacaggcac ttcaacattt ttaattgttc ctaaaatatc
     2161 agtgaattgt aatcttaaat atcttacatt ttcctcttct gcaaatttac gaatgtcgtc
     2221 tttagtgaaa gtacgttttg gcattttaaa atcctccaaa ttttatttaa taaatcggga
     2281 taaatcacca cgatttattg gcaaagtttc tccaataggc ttttgcgtgg catctacaat
     2341 catctttttt cttatctctt gttcatctgt tgttaaatgc tcttgtgagt cataaatgat
     2401 ttgtttaatc cctttgatat taaatccttt ttctaataat gatttaattt ctagtaatct
     2461 ttccaaatca ttgagtgaga acagacgttt ttgaccttct gttctttcag gtttgatgag
     2521 ttcatgtgtt tcatagtaac gtatttgcct tggcgttaaa tccgttaact tact
//
LOCUS       DAMQWL010000210         2562 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.218, whole genome shotgun sequence.
ACCESSION   DAMQWL010000210 DAMQWL010000000
VERSION     DAMQWL010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.218"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(6..620)
                     /locus_tag="PF788_002711"
     CDS             complement(6..620)
                     /locus_tag="PF788_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDG6304939.1"
                     /translation="MSQWKRISLLIVFTLVFGIIAFFHESRLGKWIDNEVYEFVYSSE
                     SFITTSIMLGATKVGEVWAMLCISLLLVAYLMLKRHKIEALFFALTMALSGILNPALK
                     NIFDRERPTLLRLIDITGFSFPSGHAMGSTAYFGSGIYLLNRLNQGNSKGILIGLCAA
                     MILLISISRVYLGVHYPTDIIAGIIGGLFCIILSTLLLRNKLIN"
     gene            complement(637..1707)
                     /locus_tag="PF788_002712"
     CDS             complement(637..1707)
                     /locus_tag="PF788_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDG6304940.1"
                     /translation="MTKIAFTGGGTVGHVSVNLSLIPTALSQGYEALYIGSKNGIERE
                     MIESQLPEIKYYPISSGKLRRYISLENAKDVFKVLKGILDARKVLKKEKPDLLFSKGG
                     FVSVPVVIAAKSLNIPTLIHESDLTPGLANKIALKFAKKIYTTFEETLNYLPKEKADF
                     IGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGGSLGSKKLNSIIRENLDALLQQYQ
                     VIHLTGKGLKDAQVKKSGYIQYEFVKEDLTDLLAITDTVISRAGSNAIYEFLTLRIPM
                     LLVPLGLDQSRGDQIDNANHFADKGYAKAIDEEQLTAQILLQELNEMEQERTRIINNM
                     KSYEQSYTKEALFDKMIKDALN"
     gene            complement(1719..2228)
                     /locus_tag="PF788_002713"
     CDS             complement(1719..2228)
                     /locus_tag="PF788_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6304941.1"
                     /translation="MIRLGKMSDLDQILNLVEEAKELMKEHDNEQWDDQYPLLEHFEE
                     DIAKDYLYVLEENDKIYGFIVVDQDQAEWYDDIDWPVNREGAFVIHRLTGSKEYKGAA
                     TELFNYVIDVVKARGAEVILTDTFALNKPAQGLFAKFGFHKVGEQLMEYPPYDKGEPF
                     YAYYKNLKE"
BASE COUNT          840 a          459 c          328 g          935 t
ORIGIN      
        1 actatttaat ttattaattt atttctaagt aataacgttg ataaaataat gcaaaataat
       61 ccaccaataa tgccggcaat aatatctgtt ggataatgta cacctagata tacacgtgat
      121 atggaaatca ataaaatcat agctgcacat aaccctataa gaataccttt tgaattacct
      181 tgatttaatc gatttaatag atagatacca cttccaaaat atgcagttga tcccatagca
      241 tgaccgctag gaaaactaaa tcctgttata tcaattaaac gcagcaatgt aggtctttct
      301 ctatcgaata tattttttaa tgctggattc aaaattccag ataatgccat tgttaatgca
      361 aaaaataatg cttcaatttt gtggcgcttt aacatgagat atgccacaag aagtaatgaa
      421 atacataaca ttgcccagac ttcacctact ttagtagccc caagcatgat agatgtcgta
      481 ataaagctct ctgatgaata tacaaactca taaacttcat tatcaatcca tttcccaagt
      541 cttgattcgt ggaaaaacgc gataattcca aaaaccaatg taaaaacgat gagcaaagag
      601 atacgtttcc attgactcat aaagcattac cccccattaa ttcaatgcgt ctttaatcat
      661 cttatcaaat aaagcttctt tcgtataact ttgttcatac gatttcatat tattgataat
      721 tcgagttctt tcctgttcca tttcatttag ttcttgtaat aaaatttgtg ctgttaattg
      781 ttcttcatca atcgctttag catatccttt atcagcaaaa tgatttgcat tgtcaatttg
      841 gtcgcctcgg gattgatcta aacctaatgg tactaataac attggtatac gtaatgttaa
      901 gaactcataa atcgcatttg atccagctct acttattact gtatccgtaa ttgctaataa
      961 atctgttaaa tcctctttaa caaattcata ttgtatatat cctgattttt taacttgagc
     1021 atcttttaat cctttaccag ttaaatgtat cacttgatat tgttgtaata atgcatctaa
     1081 gttttcgcga ataatgctat ttaatttttt acttcctaag cttccaccca taacgagtaa
     1141 aactttttta ttttcattaa agcctgttaa ttgataacca ttatgtgcat taccattttt
     1201 taaatcttct cgaattgttg ctccaataaa atcagctttc tctttaggta agtagtttag
     1261 cgtttcttca aatgttgtat atattttctt ggcaaattta agtgctatct tattcgctaa
     1321 tcctggtgtt aagtcagatt catgaataag agttggtata tttaatgatt tggctgcaat
     1381 aacaacaggc acagatacaa atccaccttt tgaaaataat agatcaggtt tttctttttt
     1441 caaaacttta cgagcatcaa gaataccttt caatacttta aatacgtctt tggcattttc
     1501 taaagaaata tatcttctta atttaccact cgaaatagga taatacttaa tttctggtag
     1561 ttgtgattca atcatttctc tttcaatacc atttttagaa ccaatataaa gcgcttcata
     1621 accttgtgat aatgcagttg gaattaaact taaatttact gatacgtgtc caactgttcc
     1681 ccctccggta aatgcgattt tcgtcattaa tattacctct attcttttaa atttttataa
     1741 tatgcataaa atggttcacc tttatcatat ggcggatatt ccattaattg ttcaccgacc
     1801 ttatgaaatc caaatttggc aaataaacct tgtgcaggtt tgtttaacgc aaaggtgtcc
     1861 gttaaaataa cttctgcacc acgtgcttta actacatcaa taacataatt gaataattct
     1921 gtagcagctc ctttatattc tttcgaacca gttaatcgat gaataacaaa ggcgccttct
     1981 ctatttactg gccagtcaat gtcatcatac cattctgctt ggtcttggtc gacaacaata
     2041 aagccataaa ttttgtcatt ttcctctaat acgtacaaat aatctttagc aatatcttct
     2101 tcaaaatgtt ctaaaagtgg gtactgatcg tcccattgct cgttgtcgtg ttctttcatt
     2161 aattcttttg cttcttctac tagatttaag atttgatcta aatctgacat tttacctaga
     2221 cggatcatgt acgtcactcc ttatatcatt atgttaaaca tgtttttcag tacatgttaa
     2281 tcttacacac tattaacatg ctttaaacct ttattatgaa tgaaaaatag taattatcac
     2341 actatgggat aaaaataacc aataaaagta tcatatacca attaattgat tgttaaaact
     2401 agtgaataat actatttaaa aagtatatgc tcattgcata ttaaaccatg aattgttatc
     2461 agcgatgata gaaattgcgt tatttacatc atttgtaaat gtctaattta tatcttttag
     2521 agttagacgt caataaaaat aaacacgcct cctaaattgc ta
//
LOCUS       DAMQWL010000211         2511 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.219, whole genome shotgun sequence.
ACCESSION   DAMQWL010000211 DAMQWL010000000
VERSION     DAMQWL010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.219"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            150..833
                     /locus_tag="PF788_002714"
     CDS             150..833
                     /locus_tag="PF788_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HDG6304942.1"
                     /translation="MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYS
                     KKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGM
                     ILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSE
                     SGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEG
                     TRVVVREVD"
     gene            851..1840
                     /gene="floA"
                     /locus_tag="PF788_002715"
     CDS             851..1840
                     /gene="floA"
                     /locus_tag="PF788_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500186.1"
                     /note="flotillin-like protein involved in membrane lipid
                     rafts; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin-like protein FloA"
                     /protein_id="HDG6304943.1"
                     /translation="MFSLSFIVIAVIIVVALLILFSFVPIGLWISALAAGVHVGIGTL
                     VGMRLRRVSPRKVIAPLIKAHKAGLALTTNQLESHYLAGGNVDRVVDANIAAQRADID
                     LPFERAAAIDLAGRDVLEAVQMSVNPKVIETPFIAGVAMNGIEVKAKARITVRANIAR
                     LVGGAGEETIIARVGEGIVSTIGSSKHHTEVLENPDNISKTVLSKGLDSGTAFEILSI
                     DIADVDISKNIGADLQTEQALADKNIAQAKAEERRAMAVATEQEMKARVQEMHAKVVE
                     AESEVPLAMAEALRSGNISVKDYYNLKNIEADTGMRNAINKRTDQSDDESPEH"
     gene            1857..>2511
                     /locus_tag="PF788_002716"
     CDS             1857..>2511
                     /locus_tag="PF788_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HDG6304944.1"
                     /translation="MSVGILIFVISVIISIITTMRENSHKDRQNQKPPQKTSTDNEPK
                     KGGFFEEIERTFKEISEELNEEEKKSSKRKYDDTLPPLFDELPKEEPKSKPVVEPMAP
                     KKQQETKPMTEKPITVPKAEPVEQKHRPSRQDNSDEIRRQLEKSLRDDIKTIRTDIDR
                     EKEKQIAKMEKRARDIIEDKYLSERTKRLKLKQLLNSQNVEKDLTKSAFQFDKDEVIN
                     "
BASE COUNT          895 a          368 c          485 g          763 t
ORIGIN      
        1 ttgtcaattt ttaattaaaa aaagttatat agtttataaa taatcaaatt gatattctat
       61 aggttcttat aactataaag tatattcaat ttcatgtata attaatgtga gggcgaggtg
      121 aaattgtgag ttataataat tttttacaaa tgacaactat cttggaatca acggctggag
      181 atacttgggt tgaacaagtt agcaatataa ttgttcaacc tatttttacg ttaatattaa
      241 cctgtttgac attcttagga tttgtatatc aactttactc taaaaaaatc aatgcagctg
      301 gtattatcgc cacattatca ttacttattt tatttttggg atttctaatc caaggaaatg
      361 tcaatatgca ttctatctta atattctcaa ttggcgttat attagttgta attgaattat
      421 ttgtagttgg tgcagtaatt ggtattattg gcatgatact gataactata agcataacaa
      481 cgctcggtga taatttgcta tttatgcttg cgaatgttat cgttgccttg attttaacga
      541 ttgtagaatg ggtgatatta gtgaagattt tcaacagaaa gattccgttt ttggataaag
      601 ttatcttaaa agattcaact aattctgagt caggttacaa ttctcatgat aaccgctcgc
      661 acctcgtagg aaagactgct caaacagtta cagatcttcg acctgcaggg attatttttt
      721 gtgaaaatga acgtattgat gctgtttcag atggcaactt tattttgcgc aataaaacgg
      781 taaaaatcct tgaagttgaa ggaacaagag tagttgtgag ggaagtagat taattaaaag
      841 gagcgatacc atgtttagtt taagttttat cgtaatagca gttattatag tagttgcatt
      901 acttatttta ttctcatttg tacccattgg tttatggatt tcagcgttag cagctggcgt
      961 tcatgttggt ataggtacat tggttggtat gcgtttacgt cgtgtatctc caagaaaagt
     1021 tatagcgcca ttaattaaag cgcacaaagc aggactagca ttaacaacaa accaattaga
     1081 atcgcattat ctagcaggag gaaatgttga cagagttgtt gacgctaata ttgctgcaca
     1141 acgtgctgac attgatcttc ctttcgaacg tgctgctgca attgaccttg caggacgtga
     1201 cgtattagaa gcggttcaaa tgtctgttaa tcctaaagtc attgaaacac catttatcgc
     1261 aggtgtagca atgaacggta ttgaagtgaa agccaaagct cgtatcacag ttagagctaa
     1321 tattgctcga cttgttggtg gtgctggtga agaaacaatc atcgcacgtg ttggtgaagg
     1381 tatcgtttca acaattggtt ctagtaagca tcatacagaa gtacttgaaa acccagataa
     1441 tatttctaaa acagttttaa gcaaaggttt agattcaggt actgcatttg aaattttatc
     1501 aattgatatt gctgacgttg atattagtaa aaatattggt gcagacttac aaactgaaca
     1561 agcattagca gacaaaaata ttgcacaagc aaaagctgaa gaacgtagag ctatggctgt
     1621 agcaactgag caagaaatga aagcgcgtgt acaagaaatg catgctaaag tagttgaagc
     1681 cgaatctgaa gtaccattag ctatggctga agcattacgt tcaggtaata tcagtgttaa
     1741 agattattat aatttgaaaa atatcgaagc tgatacaggc atgagaaatg caattaataa
     1801 acgaactgat caaagtgatg atgagtcacc tgaacattaa gtcgagaggt gattaaatga
     1861 gtgtcggtat tctaattttt gtcatatcag tgatcatttc tatcattact actatgcgcg
     1921 aaaatagtca taaagataga caaaatcaaa agccacctca aaaaacatct accgataatg
     1981 aaccaaaaaa aggtggcttt tttgaagaaa ttgagcgaac gtttaaagaa ataagtgaag
     2041 aattaaatga agaagaaaag aaatcatcga aacgaaaata tgatgatacg ttaccacctt
     2101 tattcgatga acttccaaag gaagagccta aatcgaaacc tgttgtagaa cctatggcac
     2161 ctaaaaaaca acaagaaaca aaaccgatga cagagaaacc aatcacagtg cctaaagcag
     2221 aaccggtgga gcagaaacat agaccttcta gacaagataa ttctgacgaa attagacgtc
     2281 aattagaaaa atcacttaga gatgatatta aaacgattcg tactgacatt gatagagaaa
     2341 aagaaaagca aattgctaaa atggaaaaac gtgctagaga tattattgag gataaatact
     2401 tatctgaacg tacaaaacgt ttgaaattaa agcagctgct taattctcaa aatgtcgaaa
     2461 aagatttgac taaatcagcg ttccaatttg ataaagatga agtaatcaat g
//
LOCUS       DAMQWL010000212         2490 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.220, whole genome shotgun sequence.
ACCESSION   DAMQWL010000212 DAMQWL010000000
VERSION     DAMQWL010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.220"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..404
                     /locus_tag="PF788_002717"
     CDS             <1..404
                     /locus_tag="PF788_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tandem-type lipoprotein"
                     /protein_id="HDG6304945.1"
                     /translation="KKYPVKMINNKFISTEEVKEENIKKEIENFKFFAQYSNFKDLMN
                     YKDGDISYNPEVPSYSAQYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSV
                     GYKKIEFTFLENKNENIYFTDSLHLEPSEDK"
     gene            468..1238
                     /locus_tag="PF788_002718"
     CDS             468..1238
                     /locus_tag="PF788_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein"
                     /protein_id="HDG6304946.1"
                     /translation="MMKRLNKLVLGIIFLFLVISITAGCGIGKEAKIKKSFEKTLSMY
                     PIKNLEDLYDKEGYRDDEFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTT
                     KGYYYVNAIKNDKDGRPQENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYG
                     NFKDLSKYKDGDISYNPEVPSYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTG
                     NLKGSSVGYKDIEFTFVEKKEENIYFSDGLIFKPSEDK"
     gene            1305..2072
                     /locus_tag="PF788_002719"
     CDS             1305..2072
                     /locus_tag="PF788_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014533144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein"
                     /protein_id="HDG6304947.1"
                     /translation="MKRLNKLVLYISFLILVISFTAGCGIGKEAEVKKSFEKTLSMYP
                     IKNLEDLYDKEGYRDDQFDKNDKGTWIINSEMVIQPNNEDMVAKGMVLYMNRNTKTTN
                     GYYYVDVTKDEDEGKPHDNEKRYPVKMVDNKIIPTKEIKDEKIKKEIENFKFFVQYGD
                     FKNLKNYKDGDISYNPEVPSYSAKYQLTNDDYNVKQLRKRYDIPTSKAPKLLLKGSGN
                     LKGSSVGYKDIEFTFVEKKEENIYFSDSLDYKKSGDV"
     gene            2124..>2490
                     /locus_tag="PF788_002720"
     CDS             2124..>2490
                     /locus_tag="PF788_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein"
                     /protein_id="HDG6304948.1"
                     /translation="MIKRVNKLVLGISLLFLVISITAGCGMGKEAEIKKSFEKTLSMY
                     PIKNLEDLYDKEGYRDDQFDKNDKGTWIVNSQMAIQNKGEALKIKGMLLKIDRNTRSA
                     KGFYYTNEIKTEKYEVAQDN"
BASE COUNT         1063 a          261 c          470 g          696 t
ORIGIN      
        1 aaaaaaaata tccagttaaa atgattaata ataaattcat ttctactgag gaagttaaag
       61 aagaaaacat aaaaaaagaa atcgaaaact ttaagttttt tgcgcaatat agcaatttta
      121 aagatttaat gaattataaa gatggagata tatcatataa tccagaggtg ccgagttatt
      181 cagctcaata tcaattaact aatgatgatt ataatgtaaa acaattacgt aaaagatatg
      241 acataccaac aaataaagcg ccgaagctgt tgttgaaagg tacagggaat ttaaaaggtt
      301 catcagttgg atataaaaaa attgaattta cttttttaga gaataaaaat gaaaatattt
      361 actttactga tagtctacat cttgaaccga gcgaggataa ataatcatct tttaaccaga
      421 atatgaaatc aatctaggac aacctaataa aaggagagag ttgtaagatg atgaaacgat
      481 taaacaaatt agtgttaggc attatttttc tgtttttagt cattagtatc actgctggtt
      541 gtggcatagg taaagaagcg aaaataaaga aaagttttga gaagacattg agtatgtatc
      601 cgattaaaaa tctagaggat ttatacgata aagaaggtta tcgtgatgac gaatttgata
      661 aaaatgataa aggtacatgg attattggtt ctgaaatggc aactcaaaat aagggggaag
      721 ctctgaaagt taaaggtatg gtcttgtata tgaatagaaa taccaaaaca acaaaaggat
      781 attattatgt aaatgcaata aagaatgata aagacggaag accccaagag aatgaaaaaa
      841 ggtacccagt taaaatggtc gataataaaa tcattccaac aaaagaaatt aaagataaaa
      901 acataaaaaa agaaatcgaa aactttaagt tctttgttca atatggaaac tttaaagatt
      961 tgtcgaagta taaagacgga gatatttcat ataatccaga ggtgccgagt tattcggcta
     1021 aatatcaatt aactaatgat gattacaatg taaagcaatt acgtaaaaga tatgacatac
     1081 caacaaataa agcaccgaag ttgttgttga agggtacagg gaatttaaaa ggttcatcag
     1141 ttggatataa agacattgaa tttacgtttg tagagaaaaa agaagagaac atttacttta
     1201 gtgatgggtt aatttttaaa ccaagtgagg ataaataatc atgactcgat caaaatatga
     1261 aatcaatcca ggaaagataa taagaagaat aggattgtga aattatgaaa cgattaaaca
     1321 aattggtatt gtatattagt tttttgatat tagtcattag tttcactgct ggttgtggca
     1381 taggtaaaga agcggaagtt aagaaaagct ttgaaaaaac attgagtatg taccctatta
     1441 aaaatctaga ggatttatac gataaggaag gctatcgtga tgatcagttt gataaaaatg
     1501 ataaaggtac atggattata aattctgaaa tggttattca acctaataat gaagatatgg
     1561 tagctaaagg catggttcta tatatgaata gaaataccaa aacaacaaat ggttactact
     1621 atgtcgatgt gactaaggac gaggatgaag gaaaaccgca cgacaatgaa aaaagatatc
     1681 cggttaaaat ggtcgataat aaaatcattc caacaaaaga aattaaagat gaaaaaataa
     1741 aaaaagaaat cgaaaacttt aagttctttg ttcaatatgg cgactttaaa aatttgaaaa
     1801 attataaaga cggagatatt tcatataatc cagaggtgcc gagttattcg gctaaatatc
     1861 aattaactaa tgatgattat aatgtaaaac aattacgcaa aagatatgat ataccgacga
     1921 gtaaagctcc aaagttattg ttaaaaggtt cagggaattt aaaaggctca tcagttggat
     1981 ataaagatat tgaatttacg tttgtagaga aaaaagaaga aaatatatac tttagtgata
     2041 gcttagatta taaaaaaagc ggagatgtat aatcatggct caatcagaat atgaaatcaa
     2101 tcccggaaaa agagagtgat gaaatgataa aacgtgtaaa taaattagtg cttggtatta
     2161 gtcttctgtt tttagtcatt agtatcactg ctggttgtgg catgggtaaa gaagcggaaa
     2221 taaagaaaag ttttgaaaaa acattgagta tgtatccgat taaaaatcta gaggatttat
     2281 acgataaaga aggatatcgt gatgatcaat ttgataaaaa tgataaggga acatggattg
     2341 taaattctca aatggcaatt caaaataaag gagaagctct aaaaataaaa ggcatgcttt
     2401 tgaagataga tagaaataca agaagtgcaa aaggatttta ctatactaat gaaataaaga
     2461 cggagaaata cgaagtagct caggataatc
//
LOCUS       DAMQWL010000213         2486 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.221, whole genome shotgun sequence.
ACCESSION   DAMQWL010000213 DAMQWL010000000
VERSION     DAMQWL010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.221"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            137..532
                     /gene="spxA"
                     /locus_tag="PF788_002721"
     CDS             137..532
                     /gene="spxA"
                     /locus_tag="PF788_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HDG6304949.1"
                     /translation="MVTLFTSPSCTSCRKAKAWLQEHDIPYTERNIFSEHLTIDEIKQ
                     ILKMTEDGTDEIISTRSKTYQKLNVDIDSLPLQDLYSIIQDNPGLLRRPIILDNKRLQ
                     VGYNEDEIRRFLPRKVRTFQLQEAQRMVD"
     gene            903..1622
                     /gene="mecA"
                     /locus_tag="PF788_002722"
     CDS             903..1622
                     /gene="mecA"
                     /locus_tag="PF788_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HDG6304950.1"
                     /translation="MRIERVDDTTVKLFITYSDIEARGFSREDLWTNRKRGEEFFWSM
                     MDEINEEEDFVVEGPLWIQVHAFEKGVEVTISKSKNEDMMNMSDDDATDQFDEQVQEL
                     LAQTLEGEDQLEELFEQRTKEKEAQGSKRQKSSARKNTRTIIVKFNDLEDVINYAYHS
                     NPITTEFEDLLYMVDGTYYYAVYFDSHVDQEVINDSYSQLLEFAYPTDRTEVYLNDYA
                     KIIMSHNVTAQVRRYFPETTE"
     gene            1743..2486
                     /locus_tag="PF788_002723"
                     /pseudo
     CDS             1743..2486
                     /locus_tag="PF788_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499489.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
BASE COUNT          938 a          313 c          422 g          813 t
ORIGIN      
        1 ttctcattta attttaatgt tagatagtta taataaatag taacgattaa gaattttaga
       61 aaaaaatgtt ttttcttgat ctataactaa attttaagca atgaatttta ttcattcaaa
      121 taggagagtg agatgtatgg taacattatt tacttcacca agttgcacat cttgccgtaa
      181 agcgaaagca tggttacaag aacatgacat tccgtatacg gagcgtaata ttttttctga
      241 acatttaaca attgatgaaa ttaagcaaat attaaaaatg actgaagacg gtactgatga
      301 aatcatttct acacgttcta aaacatacca aaaattaaat gttgatattg attcactacc
      361 attacaagac ttatattcaa tcattcaaga taatcctggc ttattacgtc gtccaattat
      421 tttagataat aaacgactac aagttggtta taatgaggac gagattcgac gtttcttacc
      481 tagaaaagtt cgtacgttcc aattacaaga agcacaacgt atggttgact aataaccatt
      541 taactatgtg tcatacttta ctaaaagata tgtcaagcaa cactatttct atagtgttgc
      601 ttttttggtt ttaattttac aataattgct tagtatcttt taaatcaaat gtgcaattgt
      661 taatatagct ctatattaga gtgttttgga tgaaacattt gctatgataa ggtaaaatta
      721 aattaagaaa gtgctttaat gctttaactg tataaatcat ttaaatagtt ttgctacaac
      781 gaatatgtta ttataagtta ccaaaatatt ttagagaaag aaatcaaaca aataaattgt
      841 attttgtttg atgctttaat acaatgtgga tactattcat cgactgtaag gagtgagatg
      901 atatgagaat agaacgagta gatgatacaa ctgtaaaatt gtttataaca tatagcgata
      961 tcgaggcccg tggatttagt cgtgaagatt tatggacaaa tcgcaaacgt ggcgaagaat
     1021 tcttttggtc aatgatggat gaaattaacg aagaagaaga ttttgttgta gaaggtccat
     1081 tatggattca agtacatgcc tttgaaaaag gtgtcgaagt cacaatttct aaatctaaaa
     1141 atgaagatat gatgaatatg tctgatgatg atgcaactga tcaatttgat gaacaagttc
     1201 aagaattgtt agctcaaaca ttagaaggtg aagatcaatt agaagaatta ttcgagcaac
     1261 gaacaaaaga aaaagaagct caaggttcta aacgtcaaaa gtcttcagca cgtaaaaata
     1321 caagaacaat cattgtgaaa tttaacgatt tagaagatgt tattaattat gcatatcata
     1381 gcaatccaat aactacagag tttgaagatt tgttatatat ggttgatggt acttattatt
     1441 atgctgtata ttttgatagt catgttgatc aagaagtcat taatgatagt tacagtcaat
     1501 tgcttgaatt tgcttatcca acagacagaa cagaagttta tttaaatgac tatgctaaaa
     1561 taattatgag tcataacgta acagctcaag ttcgacgtta ttttccagag acaactgaat
     1621 aacgatatta attaagcaac gcactatgaa aggagactct ttggagtctc tttttttatt
     1681 gatttcaaaa gctgaaaaag taatagtagt taaacttacg tgtaatattt tgaggtgaag
     1741 atatgttagt agctttaaat gaagaaaagg aacgcgtatt agcaactact gcattgagaa
     1801 agacacaata tttttgtccg gtgtgtggca agcaagttat tttaaagcgt gggctcaaag
     1861 taattagtca ttttgcacat aaacatttag cggaacaaaa atgttttaat aatgaaacga
     1921 ttaaacatta taaaagtaaa ttgattttag cacagatgat acagcaacaa ggatgtaaag
     1981 tagagataga gccattttaa aagaaataaa acaaattccg gatattttga ttaataataa
     2041 atatgttatt gagctacagt attcgccaat tccttataaa cagattcttc aacgaacgga
     2101 aggtttaaag aaaatgggat ataaagtaag ttggttatta aatgatgttg attattgtca
     2161 taataaagtg aagttcaatc attttcaaag tatgtttatt aatccattca ctcgaaaact
     2221 tcatacgttc aatttagaga aaaaacaaat aatgatgttt caacaaatac aatatttagg
     2281 cgggcacaaa tatgtcgctg aaaaaagaaa tgccaaaatt agtgagttgt ttaatgaggc
     2341 gccttgtgat tatcatgctg tttataaatt atcaaagttc gcaattaatc aatatatcaa
     2401 atattgtcgc tggcaaaatt ctgttttaga acccacttta agtgcaatgt atcaattaca
     2461 gttaactgat caagaagtag tgcaca
//
LOCUS       DAMQWL010000214         2429 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.222, whole genome shotgun sequence.
ACCESSION   DAMQWL010000214 DAMQWL010000000
VERSION     DAMQWL010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.222"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..542
                     /gene="sek"
                     /locus_tag="PF788_002724"
     CDS             <1..542
                     /gene="sek"
                     /locus_tag="PF788_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="staphylococcal enterotoxin type K"
                     /protein_id="HDG6304951.1"
                     /translation="SYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNNKYIYGGVTA
                     TNEYLDKPRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGH
                     NGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNK
                     TVESEKFHLDVDISYKETI"
     gene            630..1850
                     /locus_tag="PF788_002725"
     CDS             630..1850
                     /locus_tag="PF788_002725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000264629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDG6304952.1"
                     /translation="MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQ
                     KEAQRLLNERIEEKLNDKKPTTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLN
                     TLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQ
                     DLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIESIIKDINTKAQKMHSGIHKRFYLF
                     VALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTE
                     SSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILR
                     EAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQM
                     DKDMMNKLEQVKLG"
     gene            complement(1993..>2429)
                     /locus_tag="PF788_002726"
     CDS             complement(1993..>2429)
                     /locus_tag="PF788_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDG6304953.1"
                     /translation="ATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITEN
                     KKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYAN
                     LIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK"
BASE COUNT          908 a          343 c          389 g          789 t
ORIGIN      
        1 tatcttatga tttaatttca gaatcaaaag attttaataa atttagtaat ttcaagggaa
       61 aaaaacttga tgtttttggt attagttata atggccagtg taacaataaa tacatatatg
      121 gtggagtcac agctactaac gaatatctag ataaacctag aaatatccct ataaatatat
      181 ggatcaatgg aaatcacaaa actatttcta ccaataaagt ttcgacaaat aaaaaatttg
      241 ttaccgctca agagattgat gtcaaattaa gaaagtacct tcaagaagaa tacaacattt
      301 atggacataa cggcactaaa aaaggagaag aatatggtca taaatcaaaa ttttattctg
      361 ggtttaatat tggtaaagta acgttccatt taaataataa tgacactttt tcatatgatt
      421 tattctacac aggagatgat gggttaccaa aaagtttttt aaaaatttac gaagacaata
      481 aaactgtaga gtctgagaaa ttccatttgg atgtcgatat ttcttataaa gaaacgatat
      541 aaatctatta attatgtcat aatcattatt ttccgggtag catgcctacc cttattattt
      601 tttgccaatt ttgaggaggg agaagcaaaa tgtggttaga aaaatttaaa aataagaata
      661 aagaaactaa atatagatat tacgagaagt acaaagaccc tctcactgcc aaatggagac
      721 gtgttagcgt ggtacttaat aagaatggta agcaatcaca aaaagaagct caaagactct
      781 taaatgagcg tatagaagaa aaactgaatg ataagaaacc tactacactt aagtcactaa
      841 ctttccatgt cgcatgtgat gagtggtttc agaattatat caaaacgtct gggtcaaaaa
      901 gaacaactat taaaactaaa ttgagtaagc taaacacttt gaagaaattt gtagatgaag
      961 atattttaat caataaaata acactttcat atgcgcaaca agttttcgat gaaatggata
     1021 gtaaaggtta tgtatatcaa gtaaacaaag atgcgttaag catattcaaa aatgtatttg
     1081 aatacactag acgtatctat aaactgcaag atttagaatt tttaaaagat ataacattaa
     1141 ataaaagaat taagtcttat gatgaagtga aagctaaacg taataagtac ctcgaattaa
     1201 atgaaataga atctatcatc aaagatatta atacgaaggc tcagaagatg cactcaggta
     1261 tccataagcg gttttattta ttcgttgcac tcatgacaga attccaagcc ttaaatggta
     1321 tgcgtattgg tgaaatgtta gccattcaaa atgaagatat agactttgat aataagagtt
     1381 taaatattaa cggaacaatc cattggtttc acgatgaatc tggtggattc ggtgtaaaag
     1441 ataccactaa aacagagtct agttatagaa caattggatt gagtagcaga agttgcgaga
     1501 tattaaagaa agcaatactg gagaacaaaa aggattcaaa atggaatgat ggatatctaa
     1561 atagaaattt tgtatttact aatcataaag gcaacccaat gcagactgaa agattcaata
     1621 aaatccttag ggaagcagct aaagatgttg gtattgataa agaagtttct tcacatatat
     1681 taagacatag ccacatatca ttactctctc aacaaggcgt gtcacttaaa gctattatgg
     1741 atcgtgtagg ccattccgac caccgtacaa cactttccat ttattctcac gttactgaac
     1801 agatggataa ggatatgatg aacaaacttg aacaggtaaa acttggataa tgcgctcaaa
     1861 tctgagcgta tttttttgtt taaaattcga taatttgcat atactgcccc ttttgtgccc
     1921 ttttttattt tcaataccac aaaaataacc ccttaatcgt tgttattaaa gggtattttt
     1981 atttaattgg tattatttag caggaataac tgcaccattg tatttttcat taatgaagtc
     2041 ttgaatatct ttagattgta atacttcaat taatgctttg attttcttat catcttgatg
     2101 tccttcttta acagcaatta agtttgcata aggattatct ttcgcacttt ctacagcaat
     2161 agaatctttt ttaggattta gtttttgttc gattgcaaag ttcgaattaa tgataacagc
     2221 atcagcgtct tcattttgat aaattttagg taagaattct gctgattgtt tattattaaa
     2281 cttaatatct tttttattct ctgtaatatc actaaactta gcatcttcaa tttttacgcc
     2341 ttttttgatt ttaattaaac ctgcatcaac gaagaatttt aagaaacgtc cttgttcagc
     2401 tggattatta gacacataga ctgttgcac
//
LOCUS       DAMQWL010000215         2422 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.223, whole genome shotgun sequence.
ACCESSION   DAMQWL010000215 DAMQWL010000000
VERSION     DAMQWL010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.223"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..549
                     /locus_tag="PF788_002727"
     CDS             <1..549
                     /locus_tag="PF788_002727"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDG6304954.1"
                     /translation="QNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSME
                     RSIVKLNEAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILI
                     AYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRI
                     LRAETAPLYALSAISYEKELMG"
     gene            556..1902
                     /gene="mtaB"
                     /locus_tag="PF788_002728"
     CDS             556..1902
                     /gene="mtaB"
                     /locus_tag="PF788_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HDG6304955.1"
                     /translation="MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVI
                     NTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDR
                     HKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFC
                     IIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDL
                     ETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTM
                     DRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPR
                     IGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTL
                     VGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV"
     gene            2195..2371
                     /locus_tag="PF788_002729"
     CDS             2195..2371
                     /locus_tag="PF788_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016998564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDG6304956.1"
                     /translation="MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVK
                     RKKKSEAARKRKFK"
BASE COUNT          883 a          337 c          468 g          734 t
ORIGIN      
        1 caaaatatta atacagaatt gccagttgat gttacgattt gcagtggact aatcaaagct
       61 gacaaatatg agtggttgct acaaaaagct actgaattgg gtgcttcatc atttatagct
      121 gtgagcatgg aacgttcaat tgttaaatta aacgaggcaa aagttgccaa aaagatagag
      181 cgttggcaaa aaataattaa agaagctgct gaacaaagct atcgtttagt gattccatct
      241 attcaattcg agtcgaattt aaaattaatt tgtgatacta ttgataatta tgactatatt
      301 cttattgcat atgaagagga agcaaaagat ggtgagttaa gcaatttcaa gcaaacttta
      361 caacaattca atgctcagga taaagtgttg atgatttttg gtcctgaggg tggtttgtca
      421 gaaaatgaaa tttcattatt tagtaatact agtacagttg ttggtcttgg gccgagaatt
      481 ttacgggcag aaactgcgcc attgtatgcg ttaagtgcaa taagttatga aaaagaatta
      541 atggggtgaa tatttatgtc aacagttgcg tttcacacat taggttgtaa agtaaaccat
      601 tatgaaactg aagcaatctg gcaattattt aaagaagcaa actatgagcg cgttgacttt
      661 gaagcgaatg ctgatgtatt tgttattaat acttgtacag taacgaatac gggtgataaa
      721 aaaagtcgtc aaataattag acgtgcaata agacaaaatc ctgatgctgt aatctgtgta
      781 acaggttgtt atgcgcaaac ttcatcagct gaaattatgg aaattcctgg tgtcgatgta
      841 gtagttggta cacaagatag acataaacta ttaggttaca ttgacgaatt ccgtaaagaa
      901 cgccaaccaa ttaatggtgt tggaaatatc atgaaaaatc gtaaatatga agaattagat
      961 gtcccttatt ttacagatag aacacgtgcg tcattaaaaa ttcaagaagg ttgtaacaac
     1021 ttctgcacat tctgtattat tccatgggct cgtggcttaa tgcgttcaag agatccggaa
     1081 aaagtagttg aacaagcgac gcaactagtg aattcaggat ataaggaaat tgtattgacg
     1141 ggaattcata caggtggata tggtcaagat ttaaaagatt ataacttggc ccaattatta
     1201 cgtgatcttg aaacgattaa tggattagaa cgaattcgaa tttcttcaat tgaagcaagt
     1261 caacttacag atgaagtaat tgacgtttta gaacgttcaa caaaagttgt gcgtcatttg
     1321 catattccat tacaatctgg ttcagataca gtattaaaac gtatgagacg taagtataca
     1381 atggatagat tttcagaacg attaacaaaa ttgcataaag ctttaccaga cttggcagtt
     1441 acgagtgatg taattgttgg tttcccaggt gaaactgaag ctgagttcca agaaacatat
     1501 gattttatcg taaagcataa gttctctgaa ctgcatgttt tcccttattc tcctagaatt
     1561 ggcacgccag ctgcaagaat ggatgaccaa attgatgaag aaattaaaaa tgaacgggtg
     1621 cataagttaa ttacgctaag caatcaactc ggaaagttat atgcgtctaa atttgatcaa
     1681 gatgtgcttg aagtaattcc tgaggaacag ggtgacacag aaggtacatt agttggatat
     1741 gcagataatt atatgaaagt acaatttgaa ggtgacgaat cactcatagg tcaaattgta
     1801 aaagttaaaa ttacgcaagc aaattatcca ttaaatgaag ggcaagcaat taaagttgtt
     1861 gatttcgcaa caaataaatc tgatagagaa gttttagttt aagtattcct tgattcatac
     1921 catatggttc cgtattaaag atataggttt tgtaacgttg ttttaacggc ttcacaattt
     1981 actatataag caactcttct cattaaataa attattaaga gatttttaga acaaaatcta
     2041 aaagtctttg tgattttgat gtgaaatatg tttcaaataa aaaacaattt actaattgac
     2101 cataaattac agatatatta tacttataaa tgcatagttt tactgtgcaa ttgactataa
     2161 agttccgttg atatttggag ggagggaaat acagatgtct aaaacagtag tacgtaaaaa
     2221 tgaatcactt gaagatgcgt tacgtagatt taaacgttca gtttctaaaa gtggaacaat
     2281 ccaagaagta cgtaaacgtg aattttacga aaaaccaagc gtaaaacgta aaaagaaatc
     2341 agaagctgca cgtaaacgta aattcaaata attaatacct ctgttgactc cctcaacacg
     2401 aatattaatt atataaaaca aa
//
LOCUS       DAMQWL010000216         2358 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.224, whole genome shotgun sequence.
ACCESSION   DAMQWL010000216 DAMQWL010000000
VERSION     DAMQWL010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.224"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..216
                     /locus_tag="PF788_002730"
     CDS             <1..216
                     /locus_tag="PF788_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001581821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304957.1"
                     /translation="FHGVSKRKICKMYNFAYFRILEVCEMAKKNDYRFTYKDYKFLKQ
                     YGVSNTFICKMYHISIEDLEFFEVMNR"
     gene            367..687
                     /locus_tag="PF788_002731"
     CDS             367..687
                     /locus_tag="PF788_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000805733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF961 family protein"
                     /protein_id="HDG6304958.1"
                     /translation="MKPVLDIKKTLGQLNFLGVDEKYKYENGERTDKTVYAYKLASQE
                     QGEQITVKTPNKVELDYLQECELVEPDVKMYVQMSGDFGTIAYSWNAEDIKVVGSNSA
                     LKQK"
     gene            701..1003
                     /locus_tag="PF788_002732"
     CDS             701..1003
                     /locus_tag="PF788_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000386891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304959.1"
                     /translation="MDYYTADRLYRYTNSSNLSEPILNYVASRINWGDKVSLMTLAKE
                     IQSKFNDSYVKENTVKGRPKIYADLCLLCMSLSEAGHGRMLQVNLEDCIYIGDIDV"
     gene            1178..2269
                     /locus_tag="PF788_002733"
     CDS             1178..2269
                     /locus_tag="PF788_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000172946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HDG6304960.1"
                     /translation="MTLKNQCTPLTNRGVERTNKSAVEAVVDWVQVTFHIAPISAVIE
                     DVIGLPITLFKKRNSGIYFYNRGYEFSNIKLYYSSDDESMGIHLQLTGTGCREFEHHL
                     QQLNKTWQDFFDKCLSVNANFTRIDIAIDDYKTYLKVPLLIKKAEKAECVSRFRAGSA
                     INGFNLSDGRSKGATFYIGSKQSNLYCRFYEKNYEQAFKRHCDVEDIGLWNRYEIQMR
                     KAYAVNCAKVLSRTDNISEIVKSILHNNLRFISPPKGGNDKNRKRWPLYRPWALFIKD
                     TEKLNLTTRPTLKSIEDNLDWLCKQVATTLDTVLTAESMAQSEGLLTDTDFLDKILAH
                     SQFNDEHTNRINHYLEALKQKKHLSKDKC"
BASE COUNT          845 a          284 c          470 g          759 t
ORIGIN      
        1 tttcatggtg tttctaaaag aaaaatttgt aaaatgtata attttgcata ttttcgtata
       61 ttagaagttt gtgaaatggc aaaaaagaat gattatcgat ttacttataa ggattataaa
      121 tttttaaaac aatatggtgt gtctaataca tttatttgta agatgtatca tatttcaatt
      181 gaagacttag aattttttga ggtgatgaac cgataggttt gattaaaaat atgataggtc
      241 aggagaagca tagacactcc attatcaaaa atgcagtggt acggatttgc gggagttatt
      301 cctattcgtg cgacccttta gaagtcgttt aattttatta aaaattttgt aaaggatgga
      361 tatattatga aaccagtatt ggatattaaa aaaactttag gacaattaaa ctttttaggt
      421 gtagatgaaa aatataaata tgaaaatgga gagcgtactg ataaaactgt ttatgcatat
      481 aaattagcga gtcaagaaca aggcgaacaa atcactgtta aaacgcctaa taaagtggaa
      541 ttagactatt tacaagaatg cgaattagtt gaaccagacg ttaaaatgta tgttcaaatg
      601 tcaggcgatt ttggaactat cgcatatagc tggaatgcag aagatattaa agtagttggt
      661 tctaatagtg cacttaaaca aaaataatta ggtgatgtaa atggattatt atacagcaga
      721 tagattatat cgctacacaa atagttcaaa tttgagtgaa cctattttaa actatgttgc
      781 tagtcgtata aattggggcg ataaagtttc attaatgact ttagctaaag aaatacagtc
      841 taaatttaat gatagttacg ttaaagaaaa tacggtaaaa ggtcggccta aaatttacgc
      901 tgacctttgt ctattgtgta tgagcttgag tgaagcagga catggcagaa tgctacaagt
      961 gaatttggaa gattgtattt atattggcga tattgatgtt taacatatag tattagtgat
     1021 ttaacatgac cgtgtagctt ttagcgtatg caggcgcaga aatgcaagca cggagtgcgt
     1081 taagcatttg ggcggagcct gcgacaaata cgcgttaaaa aagcgagaac ggtcatgtat
     1141 caaatcgctt gcgatttgat aggaggcata aataaatatg actttaaaaa accagtgtac
     1201 cccccttact aatagggggg tagagcgtac aaataaaagt gctgtggagg cagttgttga
     1261 ctgggttcag gtcactttcc atatagcccc tatttcagca gtaattgagg acgttatcgg
     1321 tttgcctata acgttgttca aaaaacgaaa tagtggcatt tacttttata atcgcggtta
     1381 tgaattttca aacattaaat tgtattattc aagtgatgat gaatcaatgg gcattcactt
     1441 acagttaact ggtacaggtt gtagagagtt tgaacatcat ttacagcagt tgaataaaac
     1501 ttggcaagat ttttttgaca aatgtttatc agttaatgca aattttacaa gaattgatat
     1561 tgcaattgat gattataaaa catatttaaa agtgccttta ttaattaaaa aggctgaaaa
     1621 agctgagtgt gtttcacgtt ttagagctgg aagcgcaata aacggtttta atttgtcaga
     1681 cggaagaagt aaaggcgcta ctttttatat tggttctaaa caaagcaatt tatattgtcg
     1741 tttttatgaa aagaattatg aacaagcgtt taaacgtcat tgtgatgtcg aagacattgg
     1801 gctatggaat cgttatgaaa tacaaatgcg aaaggcatat gcagttaatt gtgcgaaagt
     1861 gttgagtaga acagataata taagcgaaat tgtaaagtct atattgcata ataatttgcg
     1921 ttttatctct cctcctaaag gtggaaatga taaaaatcgt aagcggtggc cattatatag
     1981 accttgggcg ttatttatta aagatactga aaaattgaat ttaactacta gaccaacatt
     2041 aaagtccatt gaggataatc ttgattggtt atgtaaacaa gttgctacta ctttagatac
     2101 agtgttaact gccgaaagta tggcgcaatc tgaggggttg cttacagata ctgatttttt
     2161 agataaaatt ttagcgcatt cacaatttaa tgatgagcat acgaatagaa ttaatcatta
     2221 tttggaggct ttaaaacaaa aaaagcactt atcaaaagat aagtgttaaa aaaataactg
     2281 ggatgtgatt tttattaaaa atttcgtaaa ggattttaga aaatcgttta tgaaaataat
     2341 aagcaagtac attttaac
//
LOCUS       DAMQWL010000217         2341 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.225, whole genome shotgun sequence.
ACCESSION   DAMQWL010000217 DAMQWL010000000
VERSION     DAMQWL010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.225"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            118..843
                     /locus_tag="PF788_002734"
     CDS             118..843
                     /locus_tag="PF788_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL13"
                     /protein_id="HDG6304961.1"
                     /translation="MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQN
                     ETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQL
                     RNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGF
                     PVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPS
                     TDANRYVKKPQNAKIEVILEKSN"
     gene            951..1667
                     /locus_tag="PF788_002735"
     CDS             951..1667
                     /locus_tag="PF788_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL12"
                     /protein_id="HDG6304962.1"
                     /translation="MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQD
                     ETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQL
                     KDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAH
                     KIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHS
                     DLANVYVKNPNKITVDVLFD"
     gene            complement(2112..2336)
                     /locus_tag="PF788_002736"
     CDS             complement(2112..2336)
                     /locus_tag="PF788_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304963.1"
                     /translation="MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQ
                     DLRNGKTKLEDARFRTIIKLYSYYVSLKEH"
BASE COUNT          866 a          365 c          334 g          776 t
ORIGIN      
        1 tcatactcga aaaatctaac taacctatta ccttttgtaa atgcggataa tttcaattat
       61 ctaattaacc cctttttata attaaacatt ccaacaatac tcaaaggaga aattcgaatg
      121 aacaataaca tcacgaaaaa aattatttta tcaacaacat tgttactatt aggtacagca
      181 tctacacaat ttcctaatac acctatcaat tcttcatctg aagcgaaagc ttattatata
      241 aatcaaaacg aaactaacgt taatgagtta actaaatatt actcgcaaaa atatttaacc
      301 ttctctaaca gtacgttatg gcaaaaagat aacggtacga ttcatgcaac gttgttacag
      361 ttttcttggt atagtcatat tcaagtttat ggacctgaaa gttggggcaa tatcaaccaa
      421 ttaagaaata aaagcgttga tatttttggc ataaaagacc aagaaaccat tgattctttt
      481 gcattatctc aagaaacgtt tactggtggt gttactcctg cagcaacatc taacgataaa
      541 cactataaac tgaatgtaac atataaagat aaagcagaaa cgtttactgg cggatttcca
      601 gtttatgaag gcaataagcc tgttttaact ttaaaagaat tagattttcg tattcgtcaa
      661 acattaatta aaagtaaaaa attatataat aattcttata ataaaggaca aattaaaata
      721 acaggtgcag acaataacta cacaatagat ttaagtaaaa ggttgccatc aactgatgca
      781 aatagatatg ttaaaaaacc tcaaaatgca aaaattgaag ttatcctcga aaaatcaaac
      841 taacaataat aatggagtta ataaaaataa tcgcaaatac tatattgact tcgctcacat
      901 ttaaatttct tattcctcgt atcatgattc ctctgaaagg agatgttcta atgagtaaga
      961 acatcacgaa aaatataatt ttaacgacaa cattattact attaggtact gtattacctc
     1021 aaaatcaaaa accagtattt agtttttact ctgaagctaa agcttatagc attggtcaag
     1081 atgaaactaa catcaatgaa ttaattaaat attacacaca gcctcatttt tcattttcaa
     1141 ataaatggct atatcaatat gataatggaa acatttatgt tgaacttaag agatattcat
     1201 ggtcagcaca tatatcttta tggggcgctg aaagttgggg aaatattaat cagttaaaag
     1261 atcgttacgt agatgtgttt ggactaaaag acaaagatac tgatcagtta tggtggtctt
     1321 atagagagac atttacaggt ggcgttacac cagccgcaaa accttctgat aaaacttata
     1381 atctttttgt gcaatacaaa gataaactac aaacgattat tggtgcgcat aaaatatacc
     1441 aaggcaataa accagtatta acattgaaag aaatcgattt ccgtgcacga gaagcgttaa
     1501 taaaaaataa aatattatat aacgaaaatc gtaataaagg taagcttaag atcaccggtg
     1561 gcggtaataa ctacactatt gatttaagca aaagattaca ttcagatcta gcaaatgttt
     1621 atgttaaaaa tcctaataaa ataactgttg acgtcctctt tgattagtat atgaaggtga
     1681 cttatacttc atgcacttta attccaaatc agattattta aatgataatt tttaaagtgt
     1741 atgatgtata taataggtaa aattttctat atatttaaat ggaattggga gtaggaatgt
     1801 gacagaaata gtattttata aaatttattt cgttgtcact ccccaacttg cacattattg
     1861 taagctgact tttcgtcagc ttctgtgttg gggcccaccc caacttgcat tgtctgtaga
     1921 atttcttttt gaaattctct atgttggggc cccgcctata attgaaaaat gcttgttaca
     1981 tgggcatttt cattcggtca actactacca atataatatt gtagagccta agacattgat
     2041 ttattatgtc ttaggctcta ttccttcatt taatgattaa attattatag caatacttta
     2101 ttgtcccatg attagtgttc ttttaatgag acatagtaac tataaagttt aataatcgtt
     2161 ctaaatctag catcttctag tttggttttc ccatttctta aatcttgtac tgtttgatat
     2221 ggaactcctg aatttttcga aattttatag cctgattcag actcaaacaa agattgaaga
     2281 gagtttataa tattattcaa ctctgtcatt tttaatcccc tttcttgaat taacaatata
     2341 c
//
LOCUS       DAMQWL010000218         2333 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.226, whole genome shotgun sequence.
ACCESSION   DAMQWL010000218 DAMQWL010000000
VERSION     DAMQWL010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.226"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1512
                     /gene="vraG"
                     /locus_tag="PF788_002737"
     CDS             <1..1512
                     /gene="vraG"
                     /locus_tag="PF788_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease VraG"
                     /protein_id="HDG6304964.1"
                     /translation="SKLLLMIVFTLLGIKEKVPIIFSLRAVFETLMLIGVAYFLTSAQ
                     NFILVFKQSISQMSKNNQVKETNHNKITFEEVVLGILGIVLITTGYYLSLNIVQYYDS
                     IGTLMFILLSTVIGAYLFFKSSVSLVFKMVKKFRKGVISVNDVMFSSSIMYRIKKNAF
                     SLTVMAIISAITVSVLCFAAISRASLSSEIKYTAPHDVTIKDQQKANQLASELNNQKI
                     PHFYNYKEVIHTKLYKDNLFDVKAKEPYNVTITSDKYIPNTDLKRGQADLFVAEGSIK
                     DLVKHKKHGKAIIGTKKHHVNIKLRKDINKIYFMTDVDLGGPTFVLNDKDYQEIRKYT
                     KAKHIVSQFGFDLKHKKDALALEKAKNKVDKSIETRSEAISSISSLTGILLFVTSFLG
                     ITFLIAVCCIIYIKQIDETEDELENYSILRKLGFTQKDMARGLKFKIMFNFGLPLVIA
                     LSHAYFTSLAYMKLMGTTNQIPVFIVMGLYICMYAVFAVTAYNHSKRTIRHSI"
     gene            2237..>2333
                     /locus_tag="PF788_002738"
     CDS             2237..>2333
                     /locus_tag="PF788_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HDG6304965.1"
                     /translation="MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDF"
BASE COUNT          861 a          261 c          390 g          821 t
ORIGIN      
        1 tcgaaactgt tattaatgat tgtctttaca ttattaggaa ttaaagaaaa ggttccaatt
       61 atttttagtt tgagggcggt atttgaaaca ttaatgttaa tcggtgtcgc ttatttttta
      121 acatctgctc aaaattttat attagtgttc aaacaatcta tttcacagat gtcaaagaat
      181 aaccaggtta aagaaacaaa tcataataaa attacatttg aagaggttgt tttaggcatc
      241 ttaggtatag tattgattac cacaggatac tatctatctt tgaacattgt tcaatattat
      301 gattctatcg gtacacttat gtttatttta ttgtcaactg tgattggggc atacttattt
      361 tttaaaagct ctgtttctct agtttttaaa atggtgaaga agtttagaaa aggtgttata
      421 agtgtaaatg atgtcatgtt ctcatcatct attatgtatc gtattaagaa aaatgctttt
      481 tcacttacgg tcatggcaat catttcagcg attactgttt cagttctttg ctttgctgct
      541 ataagtagag cgtccttatc aagtgaaata aaatatactg caccacacga cgttacaatt
      601 aaagaccaac aaaaagctaa tcaattagca agtgaattaa acaatcaaaa aattcctcat
      661 ttttataatt ataaagaagt aattcatacg aaattgtata aagataattt atttgatgta
      721 aaagcgaaag aaccatacaa tgtaacaatt actagtgata aatacatccc taatactgat
      781 ttgaaacgtg ggcaagctga tttatttgta gcggaaggtt ctatcaaaga tttagtgaaa
      841 cataagaagc atggtaaggc aattatagga acgaaaaaac atcatgttaa tattaagtta
      901 cgtaaagata ttaataaaat ctattttatg acagatgttg atttaggtgg accaacgttt
      961 gtcttaaatg acaaagacta tcaagaaata agaaagtata caaaggcaaa gcatatcgtc
     1021 tctcaatttg gattcgattt gaaacataaa aaagatgctt tagcattaga aaaagcgaaa
     1081 aataaagttg ataaatctat tgaaacaaga agtgaagcga taagctcaat atcaagttta
     1141 accggaatat tattatttgt aacatcattt ttaggtatta cattcttgat tgctgtatgt
     1201 tgcattatat acataaagca aatagatgaa accgaagatg agttagagaa ttatagtatt
     1261 ttgagaaagc ttggatttac acaaaaagat atggcaaggg gactaaagtt taaaattatg
     1321 tttaattttg ggttaccttt agttattgca ctatcacatg catattttac atcattagca
     1381 tatatgaaat taatgggtac aacgaatcaa ataccggttt tcatagtaat gggattatac
     1441 atttgtatgt atgctgtttt tgcagtgacg gcttataatc attccaagcg aacaattaga
     1501 cattccatat aaaatataca gatggctttc agtagagtag tggattcgga ttcacgaact
     1561 atactggaag ctttttatta taaatgaaga gaagttatat ttttagcatg tatagttgaa
     1621 tactgggtta aaataccata ttaataatga agtaaaggta tgagtgatta tgaaagtgtt
     1681 ttgaatgaaa tatatttaat tggtgatgct tttaattgaa aagattaaca ggattcaact
     1741 ttgtaaattg tattaaatgt gagaaaataa aagtatattc attgagagat atatgagtca
     1801 atgatcgttt taaacaagat aagtgtattt taatatgtaa aagttatgta ataaatattg
     1861 tatcgttgca aatttcccaa ctatatccat ttacaatttt tagagttgta tagataaaaa
     1921 attgcctata caataacttt ttcaaaacaa atgcctacta ctatttaaat tttatgtaaa
     1981 agttaagttt cggaattgtt aaaaatttgt aaattgaatt gtgggattgt aaattttgtg
     2041 ctattttcat ataagggcaa atacagtaaa ttgtttactg tgaggcattt ttgaaattaa
     2101 tatcagtaca ctaaaattat actgacgatt gataataaca aatttgtatc attagtttgt
     2161 aaattcactt gtcttaattt gaaacaaatt ataactgaat gtgattggtg acaatcgctt
     2221 aaatggagga ttttaaatgt ttagtaagaa aaaagataag tttatggttc aattagaaga
     2281 gatggttttc aatctggatc gtgctgctat tgaattcggt aaaatggatt tca
//
LOCUS       DAMQWL010000219         2314 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.227, whole genome shotgun sequence.
ACCESSION   DAMQWL010000219 DAMQWL010000000
VERSION     DAMQWL010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.227"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..132)
                     /locus_tag="PF788_002739"
     CDS             complement(<1..132)
                     /locus_tag="PF788_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intercellular adhesin biosynthesis
                     polysaccharide N-deacetylase"
                     /protein_id="HDG6304966.1"
                     /translation="MKYRKFIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENS
                     "
     gene            complement(129..434)
                     /gene="icaD"
                     /locus_tag="PF788_002740"
     CDS             complement(129..434)
                     /gene="icaD"
                     /locus_tag="PF788_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular adhesion protein D"
                     /protein_id="HDG6304967.1"
                     /translation="MVKPRQREYPTLKSSLNIVRETALIAISCVFWIYCLVVLLVYIG
                     TIFEIHDESINTIRVALNIENTEILDIFETMGIFAIIIFVFFTISILIQKWQRGRES"
     gene            complement(398..1636)
                     /gene="pgaC"
                     /locus_tag="PF788_002741"
     CDS             complement(398..1636)
                     /gene="pgaC"
                     /locus_tag="PF788_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly-beta-1,6 N-acetyl-D-glucosamine synthase"
                     /protein_id="HDG6304968.1"
                     /translation="MQFFNFLLFYPVFMSIYWIVGSIYFYFTREIRYSLNKKPDINVD
                     ELEGITFLLACYNESETIEDTLSNVLALKYEKKEIIIINDGSSDNTAELIYKIKENND
                     FIFVDLQENRGKANALNQGIKQASYDYVMCLDADTIVDQDAPYYMIENFKHDPKLGAV
                     TGNPRIRNKSSILGKIQTIEYASLIGCIKRSQTLAGAVNTISGVFTLFKKSAVVDVGY
                     WDTDMITEDIAVSWKLHLRGYRIKYEPLAMCWMLVPETLGGLWKQRVRWAQGGHEVLL
                     RDFFSTMKTKRFPLYILMFEQIISILWVYIVLLYLGYLFITANFLDYTFMTYSFSIFL
                     LSSFTMTFINVIQFTVALFIDSRYEKKNMAGLIFVSWYPTVYWIINAAVVLVAFPKAL
                     KRKKGGYATWSSPDRGNTQR"
     gene            1800..>2314
                     /gene="icaR"
                     /locus_tag="PF788_002742"
     CDS             1800..>2314
                     /gene="icaR"
                     /locus_tag="PF788_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ica operon transcriptional regulator IcaR"
                     /protein_id="HDG6304969.1"
                     /translation="MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSK
                     KSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNT
                     PEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQ
                     KFGAVEESKSQ"
BASE COUNT          806 a          374 c          354 g          780 t
ORIGIN      
        1 actattttct ttatatttca gttttttagg tgaatcgtca tctgcatttg caatatgatg
       61 accatccagt gtgcttacag gcaatatgat caagatactc aacactaaaa ttataaattt
      121 tctatacttc acgattctct tcctctctgc catttttgaa tcaatatgct aattgtaaaa
      181 aatacaaaaa tgataatcgc gaaaatgccc atagtttcaa atatatctaa aatttcagta
      241 ttttcaatgt ttaaagcaac acgtattgta ttgatacttt cgtcatgaat ttcaaatata
      301 gtaccaatat aaacgagtag aacaactaaa caatatatcc aaaagacaca agatatagcg
      361 ataagtgctg tttctcttac aatatttagc gatgatttta gcgttgggta ttccctctgt
      421 ctgggcttga ccatgttgcg taaccacctt tcttacgttt taatgctttt ggaaatgcga
      481 caagaactac tgctgcgtta ataatccagt atactgtcgg ataccaactt acaaatatga
      541 gtccagccat attctttttc tcgtagcgac tatcaataaa gagtgcgact gtaaattgaa
      601 taacgtttat aaaagtcata gtaaatgatg atagtagaaa tattgaaaaa ctatatgtca
      661 taaatgtata gtctaagaag tttgctgtta tgaacaaata gcctaaatat agaagcacta
      721 tatataccca taaaatcgag atgatttgct caaacatcaa aatatataaa ggaaaccttt
      781 tcgttttcat tgtgctaaaa aagtctcgta gtaatacttc gtgtccccct tgagcccatc
      841 tcacgcgttg cttccaaaga cctcccaatg tttctggaac caacatccaa cacatggcaa
      901 gcggttcata cttaatacga tatccacgta aatgcaattt ccaagaaact gcaatatctt
      961 cggtaatcat atcagtatcc cagtagccaa cgtcgacaac tgcacttttt ttaaatagag
     1021 tgaagacacc cgaaatagta ttgactgcgc cagcaagtgt ctgacttcgc ttaatacagc
     1081 caattaaact tgcatattct atcgtttgaa ttttacctaa aatagaactc ttatttcgaa
     1141 ttctaggatt acctgtaact gcaccaagtt ttggatcatg tttgaaattc tcaatcatat
     1201 aatatggtgc atcttgatca acgatagtat ctgcatccaa gcacattaca taatcatatg
     1261 aagcctgttt aatgccttga ttgagtgcgt tggctttacc tctgttttct tgtaaatcga
     1321 cgaaaataaa gtcattattt tctttgattt tatagatgag ttctgctgta ttatctgaac
     1381 ttccatcatt aatgataata atttctttct tctcgtattt gagtgcaaga acattagaca
     1441 acgtatcttc aatcgtttca ctttcgttat aacaggcaag taaaaatgta atgccttcta
     1501 attcatccac atttatgtca ggcttcttgt tcaatgaata tctaatttct ctggtaaaat
     1561 agaaataaat tgaaccgaca atccagtaaa tagacataaa tacaggataa aaaagcaaaa
     1621 agttaaaaaa ttgcaatttc tttacctacc tttcgttagt taggttgtaa gccatatggt
     1681 aattgatagt attttaattt gcaatagatt gttgttataa ttaaacggaa atatttgtaa
     1741 ttgcaactta attttcctgt aacatagtgt gattaatttt cagtaggggg ttataaaaat
     1801 tgaaggataa gattattgat aacgcaataa ccttattttc agagaagggg tatgacggta
     1861 caacacttga tgatatagct aaaagtgtaa atataaagaa agcgagttta tattaccatt
     1921 ttgactcgaa aaaaagtatt tacgaacaaa gtgttaaatg ttgttttgat taccttaata
     1981 atattattat gatgaatcaa aataaatcga actattcaat tgatgcttta tatcaattct
     2041 tatttgagtt tattttcgac atcgaagaaa ggtatattag aatgtacgtt caattatcta
     2101 atacgcctga ggaattttct ggaaatattt acggacaaat acaagattta aatcaatcat
     2161 taagtaaaga gatagcaaaa ttctatgatg aatcaaagat aaagatgaca aaagaagact
     2221 ttcagaattt aatattgctg tttcttgaaa gttggtattt gaaagcatcc ttttcgcaaa
     2281 aatttggagc agtggaagaa agtaaaagtc aatt
//
LOCUS       DAMQWL010000220         2283 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.228, whole genome shotgun sequence.
ACCESSION   DAMQWL010000220 DAMQWL010000000
VERSION     DAMQWL010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.228"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            269..445
                     /locus_tag="PF788_002743"
                     /pseudo
     CDS             269..445
                     /locus_tag="PF788_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001066885.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(423..524)
                     /locus_tag="PF788_002744"
     CDS             complement(423..524)
                     /locus_tag="PF788_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304970.1"
                     /translation="MQGFKEKHQELKKALCQIGLMRSISEVKQLNIA"
     gene            complement(647..742)
                     /gene="pepA1"
                     /locus_tag="PF788_002745"
     CDS             complement(647..742)
                     /gene="pepA1"
                     /locus_tag="PF788_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001801861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Fst family toxin
                     PepA1"
                     /protein_id="HDG6304971.1"
                     /translation="MMLIFVHIIAPVISGCAIAFFSYWLSRRNTK"
     gene            945..1088
                     /locus_tag="PF788_002746"
     CDS             945..1088
                     /locus_tag="PF788_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000251965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDG6304972.1"
                     /translation="MTRERRSFSSEFKLQMVRLYKNGKPRNEIIREYDFTPSTFVNGG
                     YKM"
     gene            1692..2075
                     /locus_tag="PF788_002747"
     CDS             1692..2075
                     /locus_tag="PF788_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304973.1"
                     /translation="MSNQNLFDELEKKGYKLEDIFTKEEIKKYKAEDQLRAGKTQYVE
                     TGKDTATLYLSSAYTKTIAALGAGAISVISALTGGLVGAGVGGFLGSIAASNIDTSKG
                     IYIKLKTKKNAAGEYVLTGEKWGYQ"
     gene            2086..2262
                     /locus_tag="PF788_002748"
     CDS             2086..2262
                     /locus_tag="PF788_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304974.1"
                     /translation="MDRLKYSLKVGILALLLFCTLNYLVPMQSNAFSIIIYSAIFAVL
                     LMLLVYIFLGILKK"
BASE COUNT          870 a          302 c          387 g          724 t
ORIGIN      
        1 ttgggtagaa aatttaataa aaatcctaag tcagtttctg aaataaaaaa agagcaaaat
       61 acgtccaata aataattgtt catattgtga tgaaacaaaa atataagtca ttagatgagt
      121 ttaactatgt tataaatatt tgtagtatct ataaaaatct cgacactatt aaaatgataa
      181 agtgccgagg ttttcttact tatttagtta attcaaagtt tatgccagat tcataagaat
      241 ttgtgacact tttaatagtg taaccattga ttattacaat ttatcaaatg gtcctttaga
      301 aggtataaat aacaaaataa aattaattaa acgtacatct tttggttatg gaagttacaa
      361 tcatttgcgc aatcgaatat tattatgttc aaaactttac gctccaaaaa gtaaaaagga
      421 agttaagcaa tgtttagttg cttaacttcg gatattgaac gcatcagtcc aatttgacat
      481 agagcctttt ttagttcttg atgtttctct ttaaaacctt gcatatttta caaaaagaaa
      541 aattagcagt ataattaaga caacgaaaat aagtatttac ttatacacca atcccctcac
      601 tatttgcggt agtgagggga tttttattgg tgcggctata tgtcacctat tttgtattgc
      661 gtctacttag ccaataagaa aaaaacgcaa tggcacagcc actgatgact ggtgctatga
      721 tgtgaacgaa aataagcatc accttataca cctcctctct gcgtctaaat tgacgcctga
      781 gagataggcg actctactat tatatcatcg gcaaatatac aagcacagtc acttgcttct
      841 gataagttat atgattctag ctgatagatt gaatcgtcta cacttaattg gacaaattct
      901 atgagaatag atattgttaa tttaagaaag taggcgattt tattatgaca agagaaagaa
      961 gatcatttag ttcagagttt aagttacaaa tggttagatt atataaaaat ggtaagccta
     1021 ggaatgaaat tatacgcgag tatgatttca caccttcgac gtttgtaaat ggcggttata
     1081 aaatgtagga aaatggataa agcaacatca aaacacgggt acattcaatc accaagataa
     1141 cttatcggat gaagaaaaag agctgattaa attacgcaaa gaagttcaac atttaaaaat
     1201 ggagaacgat attttaaagc aagtagcgct gattatgggg caaaaataga agtcattcaa
     1261 aagaatgcac atcaatattc agtatcagca atgtgtaaag tcctgataat actaagaagt
     1321 acctattatg attctataaa aagaaaagat aataaaatca ctaaagatga ttcaaacata
     1381 gaacatgccg tcataaatat ttttaattct aatagaaaag tctttggtac aagacgaatt
     1441 aaaaatcatt taaatgacaa gggtctcact gtatctggac aaaagatagg tcgatcatga
     1501 aaaaatctag tttctgttta tacgaaatct aaatacaaaa atcatctaaa agaaactaat
     1561 gaaaaacgaa ttaaaaatct ttattattag ctgctggtgt attatttgtt agtccaattt
     1621 cattatctta taattcagat gtagctcatg ctgaagataa gttagaccat tctcaagcaa
     1681 aggtaatata tttgagtaac caaaatttat ttgatgaact tgagaaaaaa ggttataaac
     1741 tggaagatat atttacaaaa gaagaaataa aaaaatataa agctgaagac caattgagag
     1801 cgggtaaaac tcaatatgta gaaacaggta aagatactgc aacattatat ctttcttctg
     1861 catatacaaa aacaatagct gctttaggtg cgggggctat tagcgttatt tctgcactaa
     1921 caggaggttt agttggcgca ggtgttggtg gtttccttgg atctatagct gcatcgaata
     1981 ttgatactag taagggaata tatataaaat taaaaactaa aaagaatgca gccggggaat
     2041 acgttctgac aggagaaaaa tggggatatc agtaagggtg attttatgga tagattaaaa
     2101 tattcactta aagttggaat tttagcatta ttattatttt gtactttaaa ttatttagtt
     2161 ccaatgcaaa gcaatgcttt ttcaataatt atatattcgg caatttttgc tgtgttactt
     2221 atgcttttag tttatatatt tttaggaatt ttaaagaaat gacatgaaac aaattagcat
     2281 tgg
//
LOCUS       DAMQWL010000221         2242 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.229, whole genome shotgun sequence.
ACCESSION   DAMQWL010000221 DAMQWL010000000
VERSION     DAMQWL010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.229"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..720
                     /locus_tag="PF788_002749"
     CDS             <1..720
                     /locus_tag="PF788_002749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1672 domain-containing protein"
                     /protein_id="HDG6304975.1"
                     /translation="KVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASL
                     PLYKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQY
                     TGFTKEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKE
                     VNYAANTDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTIN
                     TKKAFYDDNRPIEYGVHSKDE"
     gene            713..2242
                     /locus_tag="PF788_002750"
                     /pseudo
     CDS             713..2242
                     /locus_tag="PF788_002750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500098.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          956 a          247 c          409 g          630 t
ORIGIN      
        1 aaagtaggtg aacaattctt taaagataac tttggactaa aagttaaagc tacaaatgtt
       61 gtaggtaaag atgatggtgt agaagtttat gtgcattgtg aagatcatgg cattgtattt
      121 aatgcaagtc tacctttgta caaagatgcc atccatcaaa aaggatcaat gcgcagtaat
      181 gacaatggtg atgatatgag tatgatggtg ggtacagtgc tgagtggctt tgaatatcga
      241 gcgcaaaaag aaaagtatga taacttatat aaattcttca aagaaaatga aaagaaatat
      301 caatatacag gctttacaaa agaggcaatt aacaagacac aaaatgtcgg atataaaaat
      361 gaatattttt atattacata ctcttctaga agtttaaaag aatatcgaaa gtattatgaa
      421 ccactgattc gaaaaaatga taaagaattt aaagaaggaa tggaacgagc aagaaaagaa
      481 gtgaattacg ctgcaaatac agatgctgtt gctacacttt tttctactaa gaaaaacttt
      541 actaaagaca atacagtaga tgatgtaatc gaactaagtg ataaattata taatttaaaa
      601 aataaaccag ataaatctac aatcacaata caaataggga aacccactat taatactaag
      661 aaagcctttt atgatgataa tcgtccaata gaatatgggg tgcacagtaa agatgaataa
      721 aattaatgat agggatttaa cagaattaag tagttactgg gtttatcaaa atattgatat
      781 aaaaaaagaa tttaaagtta atggaaaaag gtttaaacaa gtagacagtt ataatgatga
      841 taagaatagt aatttgaatg gtgctgctga tattaaaata tatgagttat tagatgataa
      901 aagtaaacca actggtcaac agacaataat ttatcaagga acatctaatg aggcaattaa
      961 tccaaataat ccattaaaat catcggggtt tggagatgat tggctccaaa atgctaaatt
     1021 aatgaataat gataatgaaa gcacagatta tttaaagcaa acagatcaat tatcaaatca
     1081 atataaaata aagttagaag atgcagatag attatcaaat agtgattttt taaaaaaata
     1141 tagaatggaa tcaagtaact tcaaaaacaa aaccattgtg gcggatggcg gtaattcgga
     1201 aggcggtgca ggagcaaaat atcaaggagc gaaacatccg aatgaaaaag ttgttgctac
     1261 tgactcagca atgattcctt atgctgcttg gcagaaattt gctagaccac gctttgataa
     1321 tatgattagt tttaatagta ccaacgattt attaacatgg ttacaagatc cattcatcaa
     1381 agatatgcca ggaaaacgcg ttaacattaa tgatggtgtg cccaggttag atactttaat
     1441 agacagccat gtaggttata aaaggaagtt aaatagaaaa gataacacat acgatactgt
     1501 accactaatc aaaataaagt cggtaaaaga tacagaaatt aaaaatggaa aaaagtaaaa
     1561 aagactatta acataacatt agatatggat gggcgaattc caataaatgt ttggacagga
     1621 gattcgattg cacgttctgg aagaggaact ttaattaaac ttaatttaga aaatcttgat
     1681 gcgttgagta aactgattac tggtgaaaca agtggtatgt tagcagaatg cgtaatcttt
     1741 ttaaatgaaa gttttaacat ctcagaaaat gaaaataaaa attttgcaga tagaaagaaa
     1801 caattatcag aaggatttaa ggataagatt aacttatttc agttagaaga aatggaaaga
     1861 actttaatta gtaaaataaa ctcacttgaa gaagttgcag atgaaacaat agaaagtatt
     1921 agtgctgtta aacacttatt acctgatttt gcattggatg cattaaaaga aagaattaat
     1981 gagttgttta aaggtataaa atcttttata gaaaaagtgt atgatagtat agataatgaa
     2041 attttagaaa ttttcaaaaa tatagatcac gacttcagag atggagtatc tgaagaaatg
     2101 atgaaacatt tgaaagtagt gaaacagaat atagaccaaa taaaaaatca aaatgatatt
     2161 tatggtaggc aaattgcaga tattagaagt attatgaaac aacaagatgc aacaatttta
     2221 gatggaaatt ttcaaattaa tt
//
LOCUS       DAMQWL010000222         2236 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.230, whole genome shotgun sequence.
ACCESSION   DAMQWL010000222 DAMQWL010000000
VERSION     DAMQWL010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.230"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            371..751
                     /locus_tag="PF788_002751"
     CDS             371..751
                     /locus_tag="PF788_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDG6304976.1"
                     /translation="MKIILKNNSDFPIYEQIKQQVKQNILKGHVAPGEHLPSMRELAK
                     DLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDSSILKEKQFFTIENLVKELVNE
                     AQAIEMSLEELQDILTFIYEEESS"
     gene            748..1644
                     /gene="pmtA"
                     /locus_tag="PF788_002752"
     CDS             748..1644
                     /gene="pmtA"
                     /locus_tag="PF788_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenol-soluble modulin export ABC transporter
                     ATP-binding protein PmtA"
                     /protein_id="HDG6304977.1"
                     /translation="MNAIELSNVNYSSDQFNLKNISFKVPQGFVTGFIGRNGAGKTTI
                     IRLIMDLYQPQTGVIRVLEEDMALNPIELKNRIGFVYSENYFNERWTTKQLEKMIAPF
                     YRKWDHQVFEFYLEKFDLPINKSIKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLD
                     PLARNELLEIIQQELIDENKTIFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQ
                     RYQVVSGAIEDLDDELASLLIYEEHKRTGFIGLTEHAQVFKEILGHKVNITTPSIENL
                     MVYLEKRKPKYHENIKLMEEGF"
     gene            1645..>2236
                     /gene="pmtB"
                     /locus_tag="PF788_002753"
     CDS             1645..>2236
                     /gene="pmtB"
                     /locus_tag="PF788_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenol-soluble modulin export ABC transporter
                     permease subunit PmtB"
                     /protein_id="HDG6304978.1"
                     /translation="MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSF
                     ISPTILIIWILDAGHLFRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGT
                     LVISLYAYEADVIEPNSIYFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTI
                     IILVPFLFSIAIVLVNYFVLSQSSFPDLYSYILNIGF"
BASE COUNT          777 a          288 c          384 g          787 t
ORIGIN      
        1 caactaatca tgaaagccaa ggtataaaat tattattagc agcgattatg tttatgattt
       61 gtgcttttat aagtagaagt aatgatcgac gtaaaaatag taaatagaat tgactgttta
      121 aaacgattgt ttatgttgac gctacggttg tcacgtagag attaaagaca ttcgttttag
      181 cagtcttttt tattgaagta gacaatgcaa gattaaatgg tagtgtcatt tcattttatt
      241 ttattcaact gctagtaata caatactcag tgttatttct gaagactggt tgataatgag
      301 acatgcatat ttacaaaact gtgtatattg tgtatattgt atatatacag aagttgatag
      361 ggggacgttg atgaaaataa ttttaaaaaa caatagtgat tttccgattt atgaacagat
      421 taagcaacaa gtaaaacaaa atattttaaa gggacatgtt gctcctggag agcatttgcc
      481 gtcaatgaga gaacttgcca aagatcttca agtaagtttg attactacca aacgtgctta
      541 tgaagattta gagaaagacg gttttgttac aacaattaga ggaaaaggga cctttgttaa
      601 ggagcaagat agttctattt taaaagagaa acaatttttt accattgaaa atttggttaa
      661 agaattggtt aatgaagcgc aagccatcga aatgtcactt gaggaactgc aggatatttt
      721 aacgttcatt tatgaggagg aatcatcatg aatgccatag aattaagtaa tgttaattat
      781 tcaagtgatc agtttaattt aaagaatatc tctttcaaag ttcctcaagg attcgtcact
      841 ggttttattg gtagaaatgg cgctggtaaa accacaataa taaggttaat tatggatttg
      901 tatcaaccac aaactggtgt tattagagta ttagaagagg atatggctct caatccgata
      961 gagttaaaga atagaattgg gtttgtttac tctgaaaatt attttaatga gagatggact
     1021 acgaagcaac ttgaaaaaat gattgcccct ttttatcgta aatgggacca tcaagtattt
     1081 gaattttatc ttgaaaagtt cgatttacca atcaataaat caataaaaac attttcgact
     1141 gggatgaaaa tgaaattatc actagcagtt gcattttcac atcatgctga attgtatatt
     1201 tttgatgagc ctacttcagg tcttgatccc ttagctagaa atgagctatt ggagataatt
     1261 cagcaagaat taattgatga aaataaaaca atattcatgt cgacacacat tatctcagat
     1321 ttagaaaaaa tagctgatta tatcattcac ttaagtgacg gtgaagttat cttaaatggt
     1381 tcaaaagaac aactgttaca aagatatcaa gttgtgagtg gtgctattga ggaccttgat
     1441 gatgaattag catctctact tatttatgaa gaacataagc gtacgggatt tataggatta
     1501 acagaacatg cgcaagtatt taaagaaatt ttaggtcata aagtgaatat cactacacct
     1561 tctattgaga acttaatggt ttatcttgaa aagagaaaac ctaaatatca tgaaaacatc
     1621 aaattgatgg aagaaggttt ttaaatgaag gcattgttaa ttaggaattt taaattacga
     1681 cgatatacac ttatcatcta tgttctatta ttaaccttat atccttttta tataatgctt
     1741 gactcaacaa agttctttta cttattgcaa tcttttataa gtccaacaat attgattatt
     1801 tggattttag atgctggtca cttatttaga ctcaatcgta gattaggtgg taatgattca
     1861 tattattttt atatgagttt accagtgtca aaaaaacaat tgcttaatgc caactatatt
     1921 acatgcattg ttttaacatt aattggaacg cttgttatta gtttatatgc ttatgaagca
     1981 gatgtgattg aaccaaattc aatctatttt tcaactgcat atgcatttgt catatctaac
     2041 ttcttgtcta taccaattgc atttagtcaa tttacagaat tgcgtagagt caaagtgcca
     2101 tatggtatat acgtgtttac tattatcatt ttagttccat ttttattttc aattgcaata
     2161 gtattggtga attattttgt tctaagtcaa tcatcattcc cagatttata ttcatatatt
     2221 ttaaatattg gttttc
//
LOCUS       DAMQWL010000223         2191 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.231, whole genome shotgun sequence.
ACCESSION   DAMQWL010000223 DAMQWL010000000
VERSION     DAMQWL010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.231"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..897)
                     /gene="rocF"
                     /locus_tag="PF788_002754"
     CDS             complement(<1..897)
                     /gene="rocF"
                     /locus_tag="PF788_002754"
                     /EC_number="3.5.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase"
                     /protein_id="HDG6304979.1"
                     /translation="MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDL
                     DVYDKGDIKVPAVNIEKFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGD
                     HSIAVGSVSAISKHYNNLGVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLE
                     LNSNVIKPENIVLIGMRDLDKGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKS
                     RNVDGVHLSLDVDALDPLETPGTGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVN
                     PLIDSNNHTAEQAVSLVGTFFGE"
     gene            1123..>2191
                     /locus_tag="PF788_002755"
     CDS             1123..>2191
                     /locus_tag="PF788_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001622764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3-like element IS1181 family transposase"
                     /protein_id="HDG6304980.1"
                     /translation="MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPS
                     ACYCCGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIV
                     DESCFISRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLP
                     EHIAMDEFKSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVK
                     TVTIDMYEPYVRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPDYT
                     IFKNNWKVLLMDTSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRHSYELVQGLR
                     KDLRLCNWPKFINRLNSVSKKS"
BASE COUNT          755 a          384 c          315 g          737 t
ORIGIN      
        1 ttcaccaaaa aatgttccaa ctaatgaaac cgcttgttca gcagtatgat tattactgtc
       61 aatcaatgga tttacttcaa ctaaatccat tgaggaaatt aaatgtgatt gatgcagtaa
      121 ttccaatgca aaatggcttt ctctataact aagaccaccc aaaactctag taccagtgcc
      181 tggcgtttca agcggatcta aagcatcaac atctaaagat aaatgaacgc catcaacatt
      241 gcgtgacttc aaatattcta ttgtattttc aattacttcc tttatcccca atttatcaat
      301 atctgacata gtaaatgttt taatattatg atctttgata aattgtcttt cacctttatc
      361 taaatctctc ataccaatta gtacgatgtt ttctggcttg attacattac tatttaattc
      421 taaaagttct ttgggacctt cgcctgtcaa aatccttaga ggcataccat gaatatttcc
      481 acttggtgac tcttcaggta tatttaaatc accatgtgca tcataccaaa taacacctaa
      541 attattataa tgtttactta ttgctgatac tgaacctacc gcaatagaat gatctccacc
      601 aagaactaga ggaaatctgt tattttcaat tgatgctgaa acctctttat ttaatttttg
      661 attaacatct ataatttcat cataatttct taatcctttt tgttcactat gaaatttttc
      721 aatgttcaca gcaggtacct taatatcccc cttgtcatat acatcaaggt ctaattgctt
      781 taatcttgaa attaatccag catatctaat tgctgttggt cctaaatcaa cacctaattt
      841 tctttgtcca aatgttgatg gtgcacctat aatatcaatt gcttttgtct ttgtcataag
      901 cgtccccctt tgctctatgt aattaaagaa taatgtatgc gcttaccatt atcaagcaat
      961 agctacacat ataatctgtt tatcttatta cttcataaaa aaaggttctt catcttttat
     1021 ggtgggaagg taaaacttcc tgcttttttt aatacacaaa aagcgcaatt gcctctataa
     1081 tttaaagtga ccaaacccaa actaaaggag acaagtgcgc ctatgtgtaa tgatacctta
     1141 gaattactaa gaataaaaga tgaaaatata aaatatataa accaagaaat tgacgtcatt
     1201 atcaaaggaa aaaaagcaac agtggttaat gctgtactaa cgtataagcc ttcggcctgt
     1261 tattgttgtg gagttaaaaa tgaaggacaa attcataaac atggtaagcg tgtttctcgt
     1321 attactttac ttaaaactca agggtataac acatacctca acttagctaa acaacgtttt
     1381 aaatgcttag aatgcaatgg cacttttact gctaaaacgt caattgttga tgagtcgtgt
     1441 tttatctcaa gatgtgttac tcaaaaagtt atagaagaag ctactaaagt taaaacagag
     1501 attgatactg cagaagataa ctgtatctct ccatctactg taagtcgtat tagaactaaa
     1561 gcggctaatt cattacgaat taaacccttt aattgtttgc cagaacacat cgctatggat
     1621 gaatttaaaa gcgttaaaaa tgtaactgga tcaatgagtt tcatttttat agataatgat
     1681 actcatgatg ttatagatat tttagaaaat agaactacaa gattcttgcg tgcctatttc
     1741 gagcgattcg atttaaaaaa tcgacaacaa gttaagacgg ttactattga catgtatgaa
     1801 ccctatgtcc gattatttcg cgacctattt cctaatgcag ctattatttt tgacagattc
     1861 catatcgttc aacatttaaa tagagaactt aataagtatc gtgtacaagt tatgaatgaa
     1921 taccgtaata aaaaaggacc tgattataca atttttaaga ataactggaa agtcctattg
     1981 atggatacta gtaaaaccat atttagtaaa tacagatgga ataaatcttt taaggcttat
     2041 aaacgctcat ctgacattgt agaattcatg ctttcaaaag acgatatact acgacactcc
     2101 tacgaacttg tccaaggatt acgaaaagac ctaaggttat gtaattggcc taaatttatt
     2161 aatcgtttaa attcagttag taaaaagtct g
//
LOCUS       DAMQWL010000224         2187 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.232, whole genome shotgun sequence.
ACCESSION   DAMQWL010000224 DAMQWL010000000
VERSION     DAMQWL010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.232"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(265..2073)
                     /gene="pepF"
                     /locus_tag="PF788_002756"
     CDS             complement(265..2073)
                     /gene="pepF"
                     /locus_tag="PF788_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HDG6304981.1"
                     /translation="MSQQLSREEQERKYPEYTWDLTTIFKDDEAFEAAFKEVENELGK
                     EEQFKGHIGDSAETLYNALELEDTLGTKLEKVYVYAHLKQDQDTTNDKYTGMESRAHQ
                     LIIKFSSAWSFLVPEILQIDEDKIQSFVNSYDKLQKFAFDLKLINEKRPHILDAETEK
                     LLTEAQDALSTPSNVYGMFSNADLVFEDAIDKDGNAHPLTQGTFIKYLETDDRKLRES
                     AFRNVYKAYGAHNNTLGATLAGEVKKNVFNARTHNYKTAREKALSNNHIPENVYDNLV
                     KTVHKYLPLLHRYTELRKELLGLDDLKMYDLYTPLIKDIKFEMPYEEAKEWMLKALEP
                     MGEEYLNVVKEGLNNRWVDVYENKGKRSGGYSSGAHLTNPFILLNWSNTISDLYTLVH
                     EFGHSAHSYFSRKFQPSNSSDYTIFVAEVASTCNEALLSDYMDKHLDDEKRLLLLNQE
                     LERFRATLFRQTMFAEFEHKIHAIEEAGEPLTPTRMNEEYAKLNKLYFGDSVETDEDI
                     SKEWSRIPHFYMNYYVYQYATGYSAAQSLSHQILTEGKPAVDRYINEFLKKGSSNYPI
                     EILKNAGVDMTTPEPIEQACEVFEQKLNAFEKLMKA"
BASE COUNT          669 a          383 c          296 g          839 t
ORIGIN      
        1 tataaaaagt gcatatttaa tacattttta tacaacttca cttccctctt attaaaaaag
       61 aacataaaaa aacgtcgtgt ctgaatacac gacgctaaac aaaggggatg ggagaaattt
      121 ttcacttcaa acaaaggggt atgtttgtta tgtgattaat ttcatgttca taatataaca
      181 tgctatctct accatttcaa ccttttaata gtacttaatt taaattgtca caatctgttc
      241 ataatgtaag cgaatacaat agtactaagc tttcattaat ttttcaaaag cgttcaattt
      301 ttgttcaaaa acttcacaag cttgttcaat tggttcaggt gttgtcatat ctacaccagc
      361 attttttaat atctcaattg gataatttga gctacctttt ttcaagaatt cattaatata
      421 tctatctact gctggcttac cttctgttaa aatttgatga cttaagcttt gagctgcact
      481 gtaaccagtt gcgtattgat atacataata attcatatag aagtgtggaa tacgtgacca
      541 ttccttacta atatcttcat cagtttctac agaatcaccg aagtataatt tatttaattt
      601 ggcatattct tcattcattc tagttggcgt taatggttca cctgcttctt caattgcatg
      661 aattttatgc tcaaattctg cgaacattgt ttgtcggaat aatgtagctc tgaaacgttc
      721 taattcttgg tttaataata ataagcgttt ttcatcatca agatgtttat ccatataatc
      781 acttaaaagt gcttcgttac aagttgatgc aacttcagcg acaaaaatag tgtagtcact
      841 agaatttgac ggttggaatt ttctactgaa gtaactatgt gctgaatgcc caaattcatg
      901 aactaatgtg tataagtctg aaatagtatt agaccagtta agtagaataa atggattagt
      961 taaatgtgca cctgatgaat agccacctga acgtttacct ttattctcat agacatcgac
     1021 ccaacgattg tttaagcctt ctttaactac atttaaatat tcttcaccca ttggttctaa
     1081 tgcttttaac atccactctt tagcttcttc ataaggcatt tcaaacttaa tatctttaat
     1141 taatggtgta tataaatcat acattttcaa gtcatctaaa cctagcaatt ctttgcgcaa
     1201 ttcagtatat ctatgtagca atggtaaata tttatgtaca gtttttacta gattgtcata
     1261 tacattttct ggaatatgat tattactcaa tgctttttct cttgcagttt tgtaattgtg
     1321 tgtacgagca ttaaatacat ttttcttcac ttcacctgct agcgtagcgc caagcgtatt
     1381 attatgagca ccatatgctt tatatacatt tctaaaagca ctttctctta gtttgcgatc
     1441 atctgtttct aaatacttaa taaatgtacc ttgtgttaac gggtgtgcat ttccatcttt
     1501 atctatcgca tcttcaaata ctaaatcagc gttgctaaac ataccgtata catttgatgg
     1561 cgttgataac gcgtcctgcg cttctgttaa taacttttca gtttcagcat ctaaaatatg
     1621 aggacgtttt tcattaatca acttcaaatc aaatgcgaat ttttgtaatt tatcatatga
     1681 atttacaaat gattgaattt tatcttcatc aatttgtaaa atctctggca ctaagaaact
     1741 ccatgccgag ctaaatttaa taattaattg atgtgctctt gactccatac cagtatactt
     1801 gtcgttcgtt gtatcttggt cttgttttag gtgcgcgtat acatatactt tttctaattt
     1861 agtacctaat gtatcttcta attctaacgc attgtataat gtctcagcac tatcaccaat
     1921 gtgtccttta aattgttctt ctttgcctaa ctcattttca acttctttaa atgcagcctc
     1981 aaaagcttca tcatctttga aaattgttgt taagtcccat gtatattcag gatatttacg
     2041 ttcctgttct tctctcgata attgttgact catatgtagt aaacctccta ataaaatata
     2101 attgatataa ttttctcatt ttagaacaaa atttgcacgt cattaccttt atctgaacaa
     2161 atatttaaat aattgttaat aagtttt
//
LOCUS       DAMQWL010000225         2156 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.233, whole genome shotgun sequence.
ACCESSION   DAMQWL010000225 DAMQWL010000000
VERSION     DAMQWL010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.233"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            26..220
                     /locus_tag="PF788_002757"
     CDS             26..220
                     /locus_tag="PF788_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002439757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HDG6304982.1"
                     /translation="MSRILTFSEQNALAKIDDLMNTYCNQCPIKTRLRKLEGKTKAHH
                     FCINECSIGKEIKQLGNELQ"
     gene            232..483
                     /locus_tag="PF788_002758"
     CDS             232..483
                     /locus_tag="PF788_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU N-terminal domain-containing protein"
                     /protein_id="HDG6304983.1"
                     /translation="MKIISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPAFIND
                     ILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAVFE"
     gene            521..1645
                     /locus_tag="PF788_002759"
     CDS             521..1645
                     /locus_tag="PF788_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor C"
                     /protein_id="HDG6304984.1"
                     /translation="MEILRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQPRFINQ
                     LLSIDGITSIFHVMNFLAVDKAPKADWEVILPDIKAAFSDANKVLESVNEPQIDNHFG
                     EIKAELLTFKGIPYQIKLTSADQELREQLPQTYVDHMTQAQTAHDNIVFMRKWLDLGN
                     RYGNIQEVMDGVLEEVLTTYPESQLPVLVKHALEENHATNNYHFYRHVSLDEYHATDN
                     WKTRLRMLNHFPKPTFEDIPLLDLALSDEKVPVRRQAIVLLGMIESKEILPYLYKGLR
                     DKSPVVRRTAGDCISDLGYPEALPEMVLLLDDPQKIVRWRAAMFIFDEGNAEQLPALK
                     AHINDNAFEVKLQIEMAISRIENGDEALGSVWKQMANRTI"
     gene            1661..2098
                     /locus_tag="PF788_002760"
     CDS             1661..2098
                     /locus_tag="PF788_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HDG6304985.1"
                     /translation="MNAYDAYMKEIAQQMRGELTQNGFTSLETSEAVSEYMNQVNADD
                     TTFVVINSTCGCAAGLARPAAVAVATQNEHRPTNTVTVFAGQDKEATATMREFIQQAP
                     SSPSYALFKGQDLVYFMPREFIEGRDINDIAMDLKDAFDENCK"
BASE COUNT          791 a          326 c          415 g          624 t
ORIGIN      
        1 gcaatatttt gaagtaataa aggaagtgtc gcgtatttta actttttcag agcaaaatgc
       61 actcgcgaaa atagatgatt taatgaatac ttattgcaat caatgtccaa tcaaaactcg
      121 tctgcgtaaa ttagagggga aaacgaaggc gcatcatttt tgtatcaatg agtgttcaat
      181 agggaaagaa ataaaacaat taggaaatga acttcaatag gaggaagtca aatgaaaatt
      241 atatctatat cagaaacacc gaaccacaac acaatgaaga ttacacttag tgaaagcaga
      301 gaaggtatga catcagatac gtatactaaa gttgatgatt cacagccagc atttattaat
      361 gacatcttaa aggttgaagg cgttaaatca attttccatg ttatggactt tatttcagta
      421 gataaagaaa atgacgcaaa ttgggaaaca gtattgccaa aagtagaggc tgtattcgaa
      481 taaatttttc atcaactagt attcgggggg aataaagtat atggaaattt tacgtataga
      541 gccaacacca agtccaaata caatgaaagt tgttttgtca tatacaagag aagacaagtt
      601 atctaatact tataaaaaag tagaagaaac acaaccaaga tttataaatc agttgttatc
      661 tatagatggt atcacttcca tttttcatgt catgaacttc ttagctgttg ataaggcacc
      721 aaaagctgat tgggaagtca tattacctga tattaaagct gctttttctg atgcgaataa
      781 ggttttagaa tctgtaaatg aacctcaaat tgacaatcat tttggtgaaa ttaaagctga
      841 attattaact tttaagggta taccgtatca aattaagcta acttctgctg accaagaatt
      901 aagagaacaa ttaccacaaa catatgttga ccatatgact caagcgcaaa cagcacatga
      961 caatattgtt tttatgcgta aatggctaga tttaggaaat cgctatggaa atattcaaga
     1021 agtaatggat ggtgtcctag aagaagtgct aactacctat ccagaatcac agttacccgt
     1081 attggtaaaa catgctttag aagaaaatca cgcaactaat aattatcatt tctatcgaca
     1141 tgtctctttg gatgaatatc atgcaactga taattggaag actcgattac gaatgttaaa
     1201 ccattttcca aagccgactt ttgaagatat accgctgctt gatttagctt tatctgatga
     1261 aaaagtaccg gttagacgtc aagcgattgt attattaggt atgattgaaa gtaaagaaat
     1321 tttaccgtat ttatataagg ggcttcgtga taaaagtcct gttgtaagaa gaacagcagg
     1381 ggattgcata agcgatttag ggtatccaga ggcactacca gaaatggtgc tactattaga
     1441 tgatccacag aaaatcgtta ggtggcgtgc tgctatgttt atctttgatg aaggtaatgc
     1501 agagcagctt cccgcactaa aagcccatat taatgacaat gcgtttgaag ttaaattaca
     1561 aattgaaatg gccatatctc gtattgaaaa cggagatgaa gcacttggtt cagtatggaa
     1621 acaaatggca aacagaacaa tttaattgga ggaattaaat atgaatgcat atgatgctta
     1681 tatgaaagaa attgcgcaac aaatgcgtgg cgaattaact caaaatggtt ttacaagttt
     1741 agaaacgagc gaagcagtat cggagtatat gaaccaagta aatgctgatg acactacttt
     1801 tgtagttatt aactctacat gcggctgtgc agctggatta gcaagaccag ctgcagtagc
     1861 agttgcaaca caaaatgaac atagacctac aaatacagtt acagtttttg ctgggcaaga
     1921 taaagaagca actgctacaa tgcgagaatt cattcagcaa gcaccatcta gtccttcgta
     1981 tgctttattc aaaggtcaag atttagttta ttttatgcct agagaattta tcgaaggtag
     2041 agatattaat gacattgcaa tggacttaaa ggatgccttt gacgaaaatt gtaaatagta
     2101 cacataaata aatataaagg ttaacacatt ttataatatt aaaaatggtg tctgtc
//
LOCUS       DAMQWL010000226         2124 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.234, whole genome shotgun sequence.
ACCESSION   DAMQWL010000226 DAMQWL010000000
VERSION     DAMQWL010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.234"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(964..>2124)
                     /locus_tag="PF788_002761"
     CDS             complement(964..>2124)
                     /locus_tag="PF788_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDG6304986.1"
                     /translation="FPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQ
                     NIRNGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLN
                     QHVCIIRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIF
                     EEQQKIGKFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWEN
                     KFIKDIFIFENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAK
                     WGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHA
                     NLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI"
BASE COUNT          638 a          338 c          253 g          895 t
ORIGIN      
        1 atattcggaa tatatatgat tatttaaaat atttatcttt cctagttctt caatcttagt
       61 attaagtcta attagtgtat caagaaattt ttcttgattc gttgatcgtt tcaagtttta
      121 agtctccttt taaaatgaat atttcacttc ttataactaa tatttaaaca aaatgatcac
      181 ataataatat ttaatttaca atatgccact acagtgtcaa cattttataa acactattca
      241 tttgaacatg gtctaaaacg aataggacat tgtaaatgat taaatagtct gtctctagtt
      301 gatgtatatg gtcatttgtt atgcagataa taattaatct aattaatttt tacgttttag
      361 ttacttggtt gtgattgagg ctttttgtat ctagttgtaa tattctcctt ttttagaatc
      421 ataataggta cttcttgaaa tttttagaac tttgcacatt gctgatactg aatattgata
      481 cgcattttgt tgaaagactt cattttttgt ctcaaaatta gcactgcttg ctttaaatca
      541 tcattttaca ttatcaatcg atgtttttct ttgcgtaatt ttattaactc tttttcatca
      601 cttgttaaaa tgtcttgatg attgaatgac tcagtatttt ggttttgttt tatctaattt
      661 gagaaagtta atgatgttag atcatattct cgtataattt cgtttctaag cttaccattt
      721 tcataaagtt taattatttt aatttaaatt atttactaaa agctcttcag tctcttgtca
      781 taataaaatc gcctaccctc ttagtttaac aatgtctatt ctcatagaat ttgtccaact
      841 aaatgtagac gattcactaa acttctaaaa aaataaaccc caaattataa tagtctcaat
      901 attaatatat tacaatttat tcataggatt tttatcattt caattaatag gttgttatca
      961 gggttaaata aacatttttt gtaatagtcc ttttttacgt tcttttaata actcaattct
     1021 attcatttga ttattcattt tattgtctat agattttaac aatgcactta ctttatcttg
     1081 ttcagtgaga caaggtattt taagatttat attgcataag ttcgcatgag ttaatttagc
     1141 tggtgcatta cctgtgacaa atgctcgtag ttctttaaaa tttaaataat aattcataaa
     1201 aaacaaatta tgatcattac ttttaactac atgcgcatga ttatttaccc agtattgccc
     1261 attagcaata aagctactcg tctcaaactg cccccatttt gcaccatctt ctcctattag
     1321 taatcgttct tcattattga ataaataatc ttttacgtaa tcaataattc cagttgcacc
     1381 atagtaaggg tataacccct tttctcttaa tgaagaagta attggttttc ttctattatt
     1441 ttcaaagata aagatgtctt ttatgaattt gttttcccac tctggatatt cttcaccatt
     1501 ctcatctttg aatcgcaatt cttgtgtgaa gattttctgc atatagcctt ttttctgttg
     1561 ttgaagcaat tcaagttttt gttcttctaa ttcaatttgt cggtcgagtt tgctgaagaa
     1621 cttgcctatt ttttgctgtt cttcaaatat agttggggtg aagattttta aattagcaat
     1681 ttctttgaag tttagacctt ctcgactacc tccactttgt gcaaggaaaa ttttcctttt
     1741 accttttctt gataatagat actgtccaaa aaaattataa taatactctt ttttcaatct
     1801 aataatacat acatgttgat ttaaattagc atgcgtttca actatcgaat taatggctgt
     1861 tctacctatt gatgctcctg taatatttaa aagaacatca ccatagtacg ttctactatt
     1921 tttcatctca tcatctatat ctttactaat ataaactaag tcattaagat ttaatttacc
     1981 atttctaata ttttgactcc ttaaaaatgg tatgcctttg tttgtatagt tttcacttcc
     2041 acctttggga gtctttccac tacctatttt ggtagtaaga ttccctaact tcttctcttc
     2101 ccattcgcct tcaaatcctg ggaa
//
LOCUS       DAMQWL010000227         2097 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.235, whole genome shotgun sequence.
ACCESSION   DAMQWL010000227 DAMQWL010000000
VERSION     DAMQWL010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.235"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            1..1564
                     /locus_tag="PF788_002762"
                     /pseudo
     CDS             1..1564
                     /locus_tag="PF788_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498636.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR04141 family sporadically distributed
                     protein"
     gene            complement(1658..>2097)
                     /locus_tag="PF788_002763"
     CDS             complement(1658..>2097)
                     /locus_tag="PF788_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000662030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HDG6304987.1"
                     /translation="AHWELIEAIKNLRDEIAPNTLLTINDDIPDRKTGLELAEKYGID
                     GIMIGRGIFHNPFTFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKI
                     YVRGIRGASELRHQLMNTQSIAEVRALLDEFEAQMDEDVKIEL"
BASE COUNT          804 a          283 c          313 g          697 t
ORIGIN      
        1 tagattggca attattaata aagaatgtat acctagatac tgaagaagat gacaatttat
       61 tttcagaatc cggtcatcat tttgatgcaa tattatttct caaagaagat acaacattac
      121 aaaataatgt atatattata ccttttggac aagcatatca tgatataaat aatttgattg
      181 attatgactt cggaattgat tttgcagaaa gagcaatcaa aaatgaagac atagttaata
      241 aaaatgttaa tttttttcaa caaaacaggc ttaaagagat tgttaattat agaaggaata
      301 gtgtagatta cgttagacct tcagaatctt atatatcagt ccaaggacat ccacagaatc
      361 ctcaaatttt tggaaaaaca atgacttgtg gtacaagtat ttcattgcgt gtaccgaata
      421 gaaagcagca attcatagat aaaattagtg tgataatcaa agaaataaac gctattatta
      481 atcttcctca aaaaattagt gaatttccta gaatagtaac tttaaaagac ttgaataaaa
      541 tagaagtatt agatacttta ttgctaaaaa aactatcgaa ttcttcaact acagaaaata
      601 tatctataga tatatcaaga tttttagaac taagtaatat gatactcttg ttagatgata
      661 tgctcgacgt caatatatat atataaattc ttttaaaaat aatacattag agacatttga
      721 tgcgactgat cctgaagttg attacatcac tgaaatagga gattacttat taaaatatga
      781 cgttaattct ataaatgatg tcagaattga agtgatagat aatttggggc attcaaataa
      841 tatgctacta aaaacgatac tacatgcaga agttgaaatg gaagatggaa agaaatattt
      901 attacaaaat gggaaatggg gttattttaa tagagaattt tttgaccttt tgaatgatca
      961 tttgaatgag atagaaatta ggtataacac actaactccc acaggtttag tatttaaaga
     1021 aggagaagaa ggatatataa aagaaatagt aggaagattg ccagaagaat atttaatgtt
     1081 acataaaaaa ttcataaaac caataaataa gaattttata gtaaaaggaa atggaataga
     1141 gttggcagac ttatacaata ttaaaaacaa agagcttttc acgattaaaa gaggaattaa
     1201 tacatcttta tctctttata gtctagaaca gaatataata gcaattaacg ccttaaaata
     1261 tccagaatca tataattttg aagaattaat agaagctatt cctgataact cggaaaatat
     1321 atttaatgat atacaacgga gtacaaattt tagtatagta tggattttac cgatatcatc
     1381 tattgataat atgcccataa aagatatggt tcatactagt aacgtaataa ataaaaactt
     1441 tcaattaact aatttaggtt cagtattact taaaaataaa ttagtagagt ggtctctcta
     1501 tttaaaagat caaagaatta atccaattat ttatatggaa acgccaactg aagatagaaa
     1561 ttaaactttt attttaaatc accctagttc atacctaaaa gactttcaca caaacaaagg
     1621 aggaaactta aattcctcct ttcccttatt actcatacta taattcaatt ttaacgtctt
     1681 cgtccatttg ggcttcaaat tcatctagta gtgctcgtac ttctgcaatt gattgtgtgt
     1741 tcatcaattg atggcgaagt tcgctagcgc ctcttatgcc acgcacatag attttaaaga
     1801 atctacgcaa actcttgaat tgtcgtattt catctttctc atatttgtta aacaatgata
     1861 gatgcaatct caacaaatct aatagttctt tgcttgtgtg ttcgcgtggt tctttttcaa
     1921 aagtgaatgg attgtggaaa atgcctctac caatcatgat gccatcaata ccatattttt
     1981 ctgcaagttc aagtcctgtt tttctatcgg gaatatcatc gttaattgtt aacaatgtgt
     2041 ttggtgcaat ttcgtcacgt aaatttttaa tagcttcgat taattcccaa tgtgcat
//
LOCUS       DAMQWL010000228         2094 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.236, whole genome shotgun sequence.
ACCESSION   DAMQWL010000228 DAMQWL010000000
VERSION     DAMQWL010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.236"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(13..237)
                     /locus_tag="PF788_002764"
     CDS             complement(13..237)
                     /locus_tag="PF788_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304988.1"
                     /translation="MDYAHLNLEHFFARNDDLDVIRDRADFVMINNFTNEMMYRDGQI
                     EGTIDLNQYYYKNRSNAASFIMMDYKKETK"
     gene            436..906
                     /gene="sigS"
                     /locus_tag="PF788_002765"
     CDS             436..906
                     /gene="sigS"
                     /locus_tag="PF788_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigS"
                     /protein_id="HDG6304989.1"
                     /translation="MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQI
                     YKPSSKQSLSSFLFTRLNFYLIDLFRQQNQLKDVILCENNSPTLTEQPTYFNEHDLRL
                     QDIFKLLNQRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHNFN"
     gene            1019..1462
                     /locus_tag="PF788_002766"
     CDS             1019..1462
                     /locus_tag="PF788_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComK"
                     /protein_id="HDG6304990.1"
                     /translation="MQDNSTKYLLYIQTATSNHLETNCVFLHCDYILKVPINKLVSYY
                     AKLHLSSQSVLIETAKNILNINKLVPIYINPKTILFPLKHKRAPIQIYINAHYIVGMT
                     AIENSTLIHFQEGIQLEVDEPFSLVSKKCHESLALKHFIENTISN"
     gene            complement(1449..1892)
                     /locus_tag="PF788_002767"
     CDS             complement(1449..1892)
                     /locus_tag="PF788_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304991.1"
                     /translation="MNKASFDKKVKKQLWFLNKKEKQALDQRLSSISDDDSVNLNKPV
                     TFANAYLRQNVFRNKETKSYSMFVTLVVMMFAYVALLGLFLFGLITSLSGVQFFVSPK
                     VDLSTTVVILTIIGAILLMFASIYFIKIVTSYFTKKLLEIKFNSK"
BASE COUNT          767 a          342 c          235 g          750 t
ORIGIN      
        1 tcttttgttc gtttacttag tttctttttt ataatccatc ataataaaac ttgctgcatt
       61 tgatctattt ttataatagt actgatttaa atcaatcgtg ccttcaattt gaccatcacg
      121 atacatcatt tcattagtga agttatttat catcacgaaa tcagcgcgat ctcttataac
      181 atctaaatcg tcgtttcgtg caaaaaaatg ttctaaattt aaatgtgcgt aatccattgt
      241 tacctcccga ttacaaattt tgttctatct actatttagc aaagtaataa tacatcatat
      301 cacattaaat taattactta tgtcttatat ttaacactta atttagcgat tacgcaaatg
      361 aatgattttt ctaaatattt tattctaact ttatccggaa atatttgtta tacgtataac
      421 ttggagaatg actacttgaa atttaatgac gtatacaaca aacaccacaa aatcatacac
      481 catcttttaa aaaaatataa tattagctat aattatgatg agtattatca actactcttg
      541 ataaaaatgt ggcaattgag tcagatatat aaaccctcaa gcaagcaatc tttatcctct
      601 tttttattca ctcgattaaa tttttacctt atcgatttat tcagacaaca aaatcaatta
      661 aaagatgtca ttttatgtga gaataattca ccaacattaa ctgaacaacc aacatacttt
      721 aatgaacatg accttcgttt acaagatatc ttcaagcttt taaatcaaag agaaagacta
      781 tggctcaaac tataccttga aggatacaag caatttgaaa ttgctgaaat catgtcatta
      841 tcgctttcaa cgattaaatt aattaagatg tccgttaagc gtaaatgcca acataatttt
      901 aattagttta ttgtgaaatt tcggtcgatg tgttaatgat gttgaaacac cctaacatct
      961 tcatataaat ttattttaac cattaaatta acaacttatt aaacgaggag tactatattt
     1021 gcaagacaat tctactaaat atctacttta tatccaaact gctacttcaa accatctcga
     1081 aacaaattgt gtctttttac attgcgatta cattcttaaa gttccaatta acaaactcgt
     1141 ttcatattat gcgaaattgc atttatcatc acaaagtgtg ctaattgaga ctgcaaaaaa
     1201 catactaaat attaataaac tggttcctat ttacatcaac ccaaaaacta tactttttcc
     1261 gttaaaacat aaacgtgcac cgatacaaat ttatatcaat gcacattata ttgttggtat
     1321 gactgccata gagaattcaa cattaataca ttttcaagaa ggcattcagc tagaagttga
     1381 tgagccattt tctctagttt caaaaaaatg tcatgaaagt ttagctttga agcacttcat
     1441 tgaaaatact atttcgaatt aaatttaatt tctaaaagtt tcttagtaaa gtatgatgtc
     1501 acaattttta taaaatatat gctagcaaac attaataaaa tcgctccaat aattgttaaa
     1561 ataacaacag ttgtagataa atctacctta ggactaacga aaaattgtac gccagataga
     1621 cttgtaatta gcccaaataa aaacaaacct aataaagcaa cataagcaaa catcatcact
     1681 actaatgtaa caaacatact ataacttttt gtttctttat ttcgaaatac attttgtctt
     1741 aagtaagcat tagcaaaggt aacaggctta tttaagttaa cgctgtcatc atcagatata
     1801 gaagacaatc gttgatctaa tgcttgtttc tccttcttgt tcaaaaacca taattgcttt
     1861 ttaacttttt tatcaaatga tgctttattc ataattaagg atttctctcc tttataatat
     1921 tgacgtaatt ttaaacatta gcgtcaattg aaagtgtatt ttatatattt tacagaaata
     1981 tatgtatcaa atctacaaaa atccatatta caatttcatt tatggtgatt tgacgctaaa
     2041 atacagtctg ctaatttttc aaactaatgc tttttaggta ggtacaatga taaa
//
LOCUS       DAMQWL010000229         2055 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.237, whole genome shotgun sequence.
ACCESSION   DAMQWL010000229 DAMQWL010000000
VERSION     DAMQWL010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.237"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            14..1360
                     /locus_tag="PF788_002768"
     CDS             14..1360
                     /locus_tag="PF788_002768"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDG6304992.1"
                     /translation="MHFIAISINHRTADVALREQVAFRDDALRIAHEDLYETKSILEN
                     VILSTCNRTEVYAVVDQIHTGRYYIQRFLARAFGFEVDDIKAMSEVKVGDEAVEHLLR
                     VTSGLDSIVLGETQILGQIRDAFFLAQSTGTTGTIFNHLFKQAITFAKRAHNETDIAD
                     NAVSVSYAAVELAKKVFGKLKSKQAIIIGAGEMSELSLLNLLGSGITDITVVNRTIEN
                     AMKLAAKHQVKYDELSSLPNLLESADIVISSTSAQSYIITNEMIERIAENRKQDSLVL
                     IDIAVPRDIEPGISAITNIFNYDVDDLKGLVDANLRERQLAAATISEQIPAEIHAHNE
                     WISMLGVVPVIRALREKAMAIQAETMDSIDRKLPGLSERERKIISKHTKSIINQMLKD
                     PIKQAKELSSDKKSNEKLELFQNIFDIEAECPHEQAKQQKESKVKEISARRIFSFE"
     gene            1382..>2055
                     /gene="ccsA"
                     /locus_tag="PF788_002769"
     CDS             1382..>2055
                     /gene="ccsA"
                     /locus_tag="PF788_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDG6304993.1"
                     /translation="MQENLFIRFNEIILLIYLISIICYFYDFVQKSHKIRSLGIYLLG
                     IVWVLQTISLSIFIIQTRHIPLGSISDVFYTLSWLIISISLILNLIKVLNFSVFFLNL
                     IGLTLLGMNTFQPTHYTNKVQKIAVVDELLLVHIGLAVLSYVFFALAFVNALLYIMQY
                     RNLKEKRFDQKYFRIGSVATLESIVFYSTLSGWIILIFSIILGTQWGVISVGERIFID
                     PKVILSS"
BASE COUNT          707 a          283 c          387 g          678 t
ORIGIN      
        1 gggggcgttt caaatgcatt ttattgcaat tagtataaat catcgcacag ctgatgttgc
       61 actaagagag caagttgctt ttagagatga tgccttacga attgcccatg aagatttata
      121 tgaaactaaa tctattttag aaaatgtcat attatcaaca tgtaatcgaa ctgaagtata
      181 tgctgttgtt gatcaaattc acacaggtcg ttactatatt caacgatttc tagctcgtgc
      241 atttggattt gaagtagatg atattaaagc aatgtcagaa gtaaaagtgg gggacgaagc
      301 agtagaacat ttattgcgtg tcacttctgg tttagattca atcgtacttg gagaaactca
      361 aattttaggt caaataagag atgcattttt cttagcgcaa agcacaggta cgacaggaac
      421 aatttttaat catctattta aacaggcaat tacttttgca aaaagagcac ataatgaaac
      481 agatatagct gataatgctg taagtgtgtc ttatgctgcg gtcgagttgg cgaaaaaagt
      541 atttggcaaa ttgaaaagta agcaagctat cattattggt gcaggggaaa tgagtgaatt
      601 atcactatta aatcttcttg gttctggaat tactgatatt acagtagtaa atagaacaat
      661 tgaaaatgct atgaaattag cagcaaagca tcaagtgaaa tatgatgaac tatcatcatt
      721 accaaattta cttgaaagtg cagatattgt gattagttca acgagtgcac aatcttatat
      781 cattacaaat gaaatgatag aaagaattgc agaaaataga aagcaagatt cactagtatt
      841 gattgatatt gcagttcctc gagatattga acctggtatt agtgccatca caaacatctt
      901 taattatgat gttgatgact taaaaggttt agttgatgca aacttacgtg agcgacaatt
      961 agcggctgca acaatttcgg aacaaattcc tgcagaaata catgcacaca atgagtggat
     1021 tagtatgttg ggtgttgttc cagtgattag agctttacgt gaaaaagcta tggcaattca
     1081 agcagaaacg atggacagta ttgatcgtaa attgccaggg ttaagcgaaa gagaacgtaa
     1141 aattatatct aaacatacaa aaagtatcat caatcaaatg ttgaaagatc ctattaaaca
     1201 ggccaaagaa ttaagtagtg ataagaaaag taatgaaaaa ttagagctat ttcaaaatat
     1261 atttgatatc gaagctgaat gtcctcatga gcaagcgaag caacaaaaag aaagcaaggt
     1321 caaggaaatt tcagcgcgac gtatctttag ttttgaataa gcatattaat atggtgataa
     1381 tatgcaagaa aacctgttta ttcgattcaa tgaaattata ttattaatat acttaatcag
     1441 tatcatttgc tatttttatg attttgtaca aaaaagtcat aagattagaa gtttaggcat
     1501 atatttattg gggattgttt gggttttaca aacaatctct ttatctattt ttattataca
     1561 aactagacat attccattag ggtctatttc agatgtattc tatactttaa gttggctgat
     1621 tatttcaatc tctttaattc ttaaccttat caaagttttg aatttctctg tgtttttctt
     1681 gaatttaata gggttaacac ttttagggat gaatacattt caaccgacac attatactaa
     1741 taaggttcag aaaattgctg ttgtagacga gttactgtta gtccatatcg gtctagctgt
     1801 gttaagttat gtcttctttg ccttagcttt tgtcaatgca ttactgtata tcatgcaata
     1861 ccgtaatttg aaggaaaaac gttttgatca aaaatacttt agaattggta gcgttgctac
     1921 acttgaatca attgtgtttt actcaacgtt aagtgggtgg ataattctca tatttagtat
     1981 tattttaggt acacagtggg gtgtaatttc agttggtgaa cgtatattca ttgacccgaa
     2041 ggtaatactc tcttc
//
LOCUS       DAMQWL010000230         1976 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.238, whole genome shotgun sequence.
ACCESSION   DAMQWL010000230 DAMQWL010000000
VERSION     DAMQWL010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.238"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            160..504
                     /locus_tag="PF788_002770"
     CDS             160..504
                     /locus_tag="PF788_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001081424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island protein"
                     /protein_id="HDG6304994.1"
                     /translation="MNRNRMKQIILEYIKNNDSTSFVEIENVFEEQGFKYKGNGAYTS
                     GNHKNIIFWMGWNEEAFNIVADLKRDGLIEMQICPPMYYLIDGKGLRLPIVKNKNIKI
                     DHWLPVTFSLVN"
     gene            729..935
                     /locus_tag="PF788_002771"
     CDS             729..935
                     /locus_tag="PF788_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000884056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6304995.1"
                     /translation="MLDHTNESVKRVFKYRDKQELLNKYHELLDKYFLHNISFYEEDK
                     NNERIYGLVVHTKNKLGDEDYERV"
     gene            922..>1976
                     /locus_tag="PF788_002772"
     CDS             922..>1976
                     /locus_tag="PF788_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000657540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage capsid protein"
                     /protein_id="HDG6304996.1"
                     /translation="MKEFKEQFGYQLSNFDDMDIKGYANLYQKDIGKDVSMIEQGLKQ
                     LSITETEVLLPEQINKKLLGVLNMNEVNQSSNTWVGTLTKQLVSSENNFNIQELPTAR
                     KEVFKELLVNCELPQSLREVITITDDEHVESIPSLTYIKDKLATNGIELSLNGSSKYF
                     DRREGHIYTEVSDSVVHGSDRTLDDLLKEIFINECVAYETTLLLDKNNSSGLIDKGNQ
                     DLSLYNQGIKEVSNTSIYDGIKQAMKDIPQTFRRNVSIVMNTEHHDKLIKELAQMGLG
                     GLAGDLSNLFNVTNVVVTDDAHDVFVGDFGHAIYAKYEPIMYNKKKQALKGIYQFALN
                     YVFDIKIIPELLRIVNI"
BASE COUNT          773 a          244 c          368 g          591 t
ORIGIN      
        1 atataaaata ccgtgaattt tcagtaactc agtaaccaac agcctgtatg tattgacatc
       61 actgtgttta cagtggttat tgaaaaacat aaattcagtg gtttttagta tctaacgtgg
      121 ttgctttagt aactggatag attggaggac tagagtaaca tgaatagaaa tagaatgaaa
      181 caaatcatct tagaatatat aaagaacaat gacagcactt catttgtaga gattgagaat
      241 gtatttgaag aacaaggttt taaatacaaa ggtaacggcg catataccag tggcaaccat
      301 aagaatatta tattttggat gggttggaat gaagaagcgt ttaacattgt ggcagattta
      361 aaacgcgacg ggctaattga aatgcaaatt tgtccgccaa tgtactatct tattgatggt
      421 aaaggtctaa ggctaccaat tgtaaagaat aaaaatataa aaatagatca ttggctacca
      481 gtaacattta gtttagtaaa ttaaaacatg cagataagca tttaaaatat caagtataga
      541 tatgggagtg tgtatattta ttaatcataa aagaatcgca tatcaaataa tcaaacatac
      601 acctgtgaac gttcaattaa tgaatacgaa atatataaat cgcgttgtaa ggcgctatac
      661 aaaaaagcgt gctgattttg aacttattaa aatgtatatc tatcagatta aaaggagaga
      721 ggcaagacgt gctagatcat acaaatgaat ctgtaaaacg tgtgtttaag tatagagata
      781 agcaagaact attaaataag tatcacgaat tattagacaa atactttctt cataacattt
      841 cgttctatga agaagataaa aacaacgaac gtatatatgg tttagttgtt catactaaaa
      901 acaaattagg agatgaagat tatgaaagag tttaaagaac aatttgggta tcaactatct
      961 aactttgatg atatggatat taaaggatat gccaatctat atcaaaagga tataggtaaa
     1021 gatgtaagta tgattgaaca ggggttaaag caattaagta ttactgaaac agaagtttta
     1081 ttaccagagc aaattaacaa aaaattatta ggagtgttaa atatgaatga agtaaatcaa
     1141 tcaagtaata catgggtagg taccttaaca aaacaattag ttagtagtga gaataacttt
     1201 aatattcaag agttaccaac tgcacgtaaa gaagtattta aagagttatt ggtgaattgt
     1261 gagctacctc aatcactacg tgaggtgatt accattactg atgatgaaca tgttgaatct
     1321 ataccatcac taacatacat taaagataag ttagctacta acggtattga gctatcactt
     1381 aatggcagta gtaaatactt tgatagacgt gagggacata tctacacaga agtatcagac
     1441 agtgtagttc atggctctga tagaacatta gatgatctac ttaaagagat atttattaat
     1501 gagtgtgtcg catatgaaac aacattgtta ttagataaga ataattcaag tggtttaatt
     1561 gataaaggta accaagactt atcactttat aatcaaggta tcaaagaagt aagtaacaca
     1621 tcaatatacg atggtatcaa gcaagcgatg aaagatatac cacaaacgtt taggcgtaat
     1681 gtatctattg tgatgaacac agaacatcat gataagctca tcaaagagtt ggcacagatg
     1741 ggattaggtg gacttgcagg tgatttaagt aacctattta atgtgactaa tgtagtggtt
     1801 actgatgatg cacatgatgt ctttgttgga gactttggac atgccatata tgctaaatac
     1861 gaacctatta tgtataacaa aaagaaacaa gcattaaaag gtatttatca atttgcattg
     1921 aactatgtgt ttgatataaa aataattcca gagttattgc gcatagttaa tattaa
//
LOCUS       DAMQWL010000231         1955 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.239, whole genome shotgun sequence.
ACCESSION   DAMQWL010000231 DAMQWL010000000
VERSION     DAMQWL010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.239"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1175
                     /locus_tag="PF788_002773"
     CDS             <1..1175
                     /locus_tag="PF788_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA mismatch repair protein MutL"
                     /protein_id="HDG6304997.1"
                     /translation="FPICYINIEMDPILVDVNVHPTKLEVRLSKEEQLYQLIVSKIQE
                     AFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQRQNTENNQEKTFSSEESNSKPFM
                     EENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNNTREKDEDYFKKQQEILQEMDQ
                     TFDSNDGTTVQNYENKASDDYYDVNDIKGTKSKDPKRRIPYMEIVGQVHGTYIIAQNE
                     FGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFHFSKDEQLVIDQYKNELQ
                     QVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEKKVDIKKLREDVAIMM
                     SCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFSKYELEKLFKRVM"
     gene            1181..1723
                     /locus_tag="PF788_002774"
     CDS             1181..1723
                     /locus_tag="PF788_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HDG6304998.1"
                     /translation="MNQVNNNILPAIRNIKDLEKLIKTDYKMCVLLDMHIGHIKSIME
                     LLKQNHIECFIHIDLIKGLSHDEFASEFIIQQYKPKGIVSTKSKVIKKAKSLNTLTIF
                     RVFIIDSQALKRSIDLIKKVEPDFVEVLPGVASKAIHHIQKETNTQVIAGGLINTIDE
                     VNEAVKNGAKYVTTSYDKLW"
BASE COUNT          826 a          241 c          326 g          562 t
ORIGIN      
        1 ggttcccgat ttgttatatt aatattgaaa tggatccaat cttagtagac gtaaatgttc
       61 atccaacaaa actagaagtg cgtttatcaa aagaagagca actataccaa ttgattgtga
      121 gcaaaataca agaagcattt aaagaccgta tattaattcc taaaaataac ttggattatg
      181 tgccaaaaaa aaataaagta ttacattcat tcgaacaaca aaaaatcgaa tttgaacaaa
      241 gacaaaacac agagaataac caagagaaga cgttttcatc tgaagaaagt aacagtaagc
      301 catttatgga agaaaatcaa aacgatgaga tagttataaa agaagattca tataatccat
      361 tcgtaacgaa aacatctgaa agtttaatag ctgatgatga atcttctggt tataataata
      421 cacgtgaaaa agatgaagac tacttcaaaa aacaacaaga aattttacaa gaaatggatc
      481 aaacatttga ttcaaatgat ggtacaactg tgcaaaatta tgagaataaa gcgtctgatg
      541 attattatga tgtaaacgat attaaaggaa caaaaagtaa agaccctaaa cgaagaattc
      601 catatatgga aattgttgga caagtacatg gaacgtatat tattgctcaa aatgaatttg
      661 gcatgtacat gattgaccag catgcagctc aagaaagaat aaaatatgaa tattttcgag
      721 ataaaatagg tgaggttacc aatgaagtac aagatttatt aatcccgtta acatttcatt
      781 tttcaaaaga tgaacaatta gtcattgatc aatataaaaa tgagcttcaa caagtaggta
      841 tcatgttaga acattttggt ggtcatgatt atattgtaag tagctatcca gtttggttcc
      901 ctaaagatga agtagaagaa attattaaag atatgattga gctaattttg gaagagaaaa
      961 aagtagatat caaaaaatta cgtgaagatg tagcaatcat gatgtcatgt aaaaaatcca
     1021 ttaaagcgaa tcattattta caaaaacatg aaatgtctga tttaattgat caattaagag
     1081 aagcggaaga tccatttaca tgtccacatg gtcgtccaat aatcattaat ttttcaaaat
     1141 acgaattaga aaaattattt aagcgtgtga tgtagagagg atgaatcaag tgaataacaa
     1201 catattgcct gctataagaa acattaaaga tttagagaaa ctgattaaaa cagactataa
     1261 aatgtgtgtg cttctagata tgcatatagg acatataaaa agtattatgg aattgctgaa
     1321 gcaaaatcat atagagtgtt ttattcatat agatttgata aaaggtttaa gccacgatga
     1381 atttgcaagt gaatttatta ttcagcaata caagccaaaa ggtatcgtat cgactaaatc
     1441 taaagtaata aaaaaagcta aatcattaaa tactttaacg atttttagag tatttattat
     1501 tgatagtcaa gcattgaaac gcagtataga tttgataaaa aaagttgaac ctgattttgt
     1561 tgaagtactt ccaggtgttg cgagtaaagc gattcatcat attcagaaag aaacaaacac
     1621 acaagtcatt gcaggtggcc taattaatac aatagatgaa gtcaatgaag ctgttaaaaa
     1681 tggagcgaaa tatgtaacta ctagttatga taaactttgg taaatcataa gtctgcaaaa
     1741 atttcatttt tcacgagatt tagtcatata acataataaa aaagccgttt tcatatggga
     1801 tatgcagtag gtatcaaaca aaaaataatc aaataaaata attagcacct ctaaaacgat
     1861 taaaatcatt aaagttttag aggtgtttat tagtaaaaaa tgcaactagt cataaaaaat
     1921 atggctgaag aatgtcaatt aaacaaaaga gcgtc
//
LOCUS       DAMQWL010000232         1873 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.240, whole genome shotgun sequence.
ACCESSION   DAMQWL010000232 DAMQWL010000000
VERSION     DAMQWL010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.240"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(360..1583)
                     /locus_tag="PF788_002775"
     CDS             complement(360..1583)
                     /locus_tag="PF788_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgE/DapE family deacylase"
                     /protein_id="HDG6304999.1"
                     /translation="MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLTDLFDKYDIKS
                     EILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWSYPPFQLTEKDGKLYGRG
                     TTDMKGGLMALVVSLIELKEQNELPHGTIRLLATAGEEKEQEGAKLLADKGYLDDVDS
                     LIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNLFKEKYSE
                     LKQQDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLE
                     FNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVAS
                     SYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKY
                     IDIFKEASIQYLKEK"
BASE COUNT          597 a          315 c          272 g          689 t
ORIGIN      
        1 tgtaaaaaag ctgatttcta taaattattt gatagaaatc agcttttttc aaatgtattt
       61 gataatttac agctcgttga gctgctgttt tctagggatt tatgtcccat tccttttacg
      121 agaaggtttt tacgagtttt atgtaactat tagaagctat ctttttatat gaccattagt
      181 caatatatgt atgacaaatc agcacaataa tttcagtttt acatcactta atcaatgaaa
      241 atgtgcttgt tgatatttga atatttacat tcaaacaata ttcatcgcta tttctatcaa
      301 cttaaaattc gcaataaaaa actgccagca cgcgaatagg gcagctgaca gcatcgttct
      361 tatttttctt ttaaatattg aatggaagcc tctttaaaaa tatcaatata tttcagatac
      421 atatcttttt caatatattc atcgatttga tgtgccatta atggattacc tggtccaaaa
      481 atggctaaat caacattgtc cttattatct cctaagaaac tagaggcatc tgttgcacct
      541 acaagcgctg aaacaaatat ttcgtcttgt tctacataac tagaagctac atctttaatc
      601 gtagtaatta atttgctatt tttatcgctt gttacaggtc ggtgattgct tggaatatcg
      661 agtgaaagct tattgctatc cacatcatta atgatatttt ggaaaaacga ttctataaag
      721 tcgttatcat actcaggaac tggtcttacg ttaaattcaa gtgaagcttc atctggtaca
      781 gagttaaatt gtttgccgcc atttataatc gaacatacag ctgtaagacc agatgcataa
      841 tttgcatcct cttcagaaat ttcttttcca atcaatgatt tgaacatagg cgcaacatct
      901 aattcatgtt tagtatcttg ttgtttaagc tctgaatatt tttctttaaa tagattataa
      961 aattcaagca gtgtatcaat tgcattgtca ccaataaatg gaactgagct atggacagct
     1021 ttaccagttg cagttacttt acatgacata gaccccttat gtgcataata aattccagat
     1081 ccagttggtt cagcaataat taagctatcg acatcgtcta aatagccttt atcagctaat
     1141 aatttggcac cttcttgttc tttctcttcg ccagcagtag ccagtaatct aatcgttcca
     1201 tgaggcaatt cattttgttc ttttaattcg attagagata cgaccaaagc cattaaaccg
     1261 cctttcatat ctgtagtgcc tcggccatat aatttgccat ctttttctgt cagttgaaaa
     1321 gggggatatg accaattatc ttgatttcct gcatcaacaa catccatatg accactcaat
     1381 gcgagtatag gtgagccgtt accgatttct gcaacgatat tggcgcggtg ttcattaact
     1441 ttcaaaattt cagatttaat atcgtacttg tcgaataaat ctgttaaata attacaaacg
     1501 tctatttcat tattattttc agtttgtagt tcaacaatat ctgctagtaa ttgaattttt
     1561 tctttttcac taaaagttgt cattaagctc acacctttca aagtagtata tatatttata
     1621 taaacataat ttttattctt aaacataatt taaaatgcag aaagtagtgt gttatttgat
     1681 ttcgttctat gaaattaact gtctagtatc aacgatctta ttaacgctga tatcggatat
     1741 gcttaatttt atagtaaatt gtatgagaaa gatgcaggat attatttagc taataattat
     1801 atataaattt caaatcgatg gttattaact actaaataaa aatatttgct aaattaatga
     1861 ctttgtacac aca
//
LOCUS       DAMQWL010000233         1787 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.241, whole genome shotgun sequence.
ACCESSION   DAMQWL010000233 DAMQWL010000000
VERSION     DAMQWL010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.241"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..194
                     /locus_tag="PF788_002776"
     CDS             <1..194
                     /locus_tag="PF788_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305000.1"
                     /translation="ITYNKDLDDLCWLLPGIIICGVILIVSFTIAMITKNWLSEILFF
                     INIVLVLYYIYPIFYSFIG"
     gene            223..411
                     /locus_tag="PF788_002777"
     CDS             223..411
                     /locus_tag="PF788_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305001.1"
                     /translation="MSLHFAILFWLALIFLVAATFILVLMKKTSKESKKESYLSFTVI
                     LYIFGFAILIYTFIFGVL"
     gene            599..1168
                     /locus_tag="PF788_002778"
     CDS             599..1168
                     /locus_tag="PF788_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305002.1"
                     /translation="MNYIKRTIILLILFVVVSPINSPKTIADNKYSEIQDDKFQLQPG
                     DIIVTKGPVMWGFFGHCSIAIDDKTILQIEGPGDKPTTQSFESFKYNYASGKNDWMKV
                     YRCSYPGAGKKAAEWVKKNYENTNHRYLVTLNLNSKKFTYCTKIIYQAYKFGVSEKSV
                     KSYGLHIISPYAIKDNFIDPYKLRLVKAY"
     gene            1256..1540
                     /locus_tag="PF788_002779"
     CDS             1256..1540
                     /locus_tag="PF788_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305003.1"
                     /translation="MNELTKEQKYTIAKFYKLYIERSNKGETETVANFFGDAKDAREN
                     YFCDRDYQDFLTNCQILIQNKYLTGEVLDDNIYNISILNKTFIEFEQNFG"
     gene            1602..>1787
                     /locus_tag="PF788_002780"
     CDS             1602..>1787
                     /locus_tag="PF788_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305004.1"
                     /translation="MSEWHINNQSTKPFLIQQAEKQLSIVKPLPNGSFQILTEINLEN
                     GNISNIDHSLLVSVDPKA"
BASE COUNT          636 a          264 c          260 g          627 t
ORIGIN      
        1 taatcacata taataaagat ttagatgatt tatgttggct cctgcctggt attatcattt
       61 gtggtgtgat actcatcgta tcctttacca ttgcaatgat aactaaaaac tggttaagtg
      121 aaatattatt ttttataaat atcgtactcg ttctctatta catttatcct attttttata
      181 gttttatagg ttaataatta cggtatataa ggagggtttc acatgtcttt acattttgca
      241 attctgtttt ggctagcatt aattttctta gttgccgcta cgtttatact cgtattaatg
      301 aaaaaaacta gcaaagaatc taaaaaagag tcctatttaa gtttcactgt cattctctat
      361 atttttggat tcgctatatt aatatacaca tttatatttg gtgtgctata aatgaaattc
      421 attttatatc cagtctgaaa cgtctcaatg atgtttcaga ctgtttttta ttcttaatag
      481 acatttcaca ctctcatact ttaatattta agatatgttt tagtcttaca agcttattaa
      541 agattacaat tctaatttaa gactatttac atatatttct tcaacaagga gcttttaagt
      601 gaactatatt aaacgaacga taattttact tatattattc gttgtcgtat ccccaataaa
      661 ctcaccaaaa acaattgcag ataataagta ttcagaaatt caagatgaca aattccaatt
      721 acaacctggt gatattattg ttacaaaagg ccctgtcatg tggggatttt ttggtcattg
      781 tagtatcgcg attgatgata aaacgatttt acaaattgag gggcctggcg acaaaccaac
      841 tacacaatcc ttcgaatctt ttaaatataa ttatgcaagt ggcaaaaatg attggatgaa
      901 agtttatcgt tgcagctatc ctggtgcagg taaaaaagcg gctgaatggg ttaagaaaaa
      961 ctatgagaat acaaatcatc gttatctagt tacattaaat ttgaacagca aaaaatttac
     1021 gtattgtact aaaattatct accaagctta taaatttggt gtaagtgaaa aatcagttaa
     1081 aagttatgga ctacatatta tttcacccta tgcaattaaa gataatttta tagatccata
     1141 caaactaagg cttgttaaag cttattaaca cagtttcatc aaatagttaa attagtttgt
     1201 gttttgcaat aaattgggta tagattacaa atgatatttc aggaggccca atattttgaa
     1261 tgaactaact aaagaacaaa agtatacaat agctaaattt tacaaattat atattgaacg
     1321 ttcgaataaa ggagaaacag aaacagtcgc taactttttt ggcgatgcta aagatgcacg
     1381 tgaaaactat ttttgcgatc gtgattatca agacttctta actaactgcc aaattttaat
     1441 tcaaaacaaa tacttaactg gtgaagtttt ggacgataac atttacaata tttctatttt
     1501 aaacaagaca tttattgaat tcgaacaaaa ttttggttga acatgaatgt ctcaactata
     1561 aactttctaa ccctatttta aagcaggagt gaaaaacata catgagtgaa tggcatatta
     1621 ataatcaatc tacaaaacct tttttaatac aacaagcgga aaagcaattg tctattgtta
     1681 aaccgttgcc taatggtagc ttccaaatac tcacagaaat aaatttggag aatggcaata
     1741 ttagtaacat cgatcattct ttacttgttt cagtagaccc caaagca
//
LOCUS       DAMQWL010000234         1732 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.242, whole genome shotgun sequence.
ACCESSION   DAMQWL010000234 DAMQWL010000000
VERSION     DAMQWL010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.242"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..189
                     /gene="vraH"
                     /locus_tag="PF788_002781"
     CDS             <1..189
                     /gene="vraH"
                     /locus_tag="PF788_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008530244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide resistance ABC transporter activity
                     modulator VraH"
                     /protein_id="HDG6305005.1"
                     /translation="KFRELVKQSYEDLKNLTVTWYNVIALTILVIVLSSFTTPMIGIP
                     AGLLGGAYYLKRREEKGK"
     gene            237..737
                     /locus_tag="PF788_002782"
                     /pseudo
     CDS             237..737
                     /locus_tag="PF788_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014532440.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
     gene            complement(797..1294)
                     /locus_tag="PF788_002783"
     CDS             complement(797..1294)
                     /locus_tag="PF788_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDG6305006.1"
                     /translation="MIINLETQQIHFDLEHEIPYFQAPEKNRIRLDIDVLNKKQISNI
                     INVIFNNQSKTKCTFLSEYLYPVKFREKTRIGRFFNITNWYEEIHSTDEKYVIATIKN
                     IKNKDLIDYSLYIKKGLVEPFIVFYNQENIFYISNAVIDIISVSKDTLDYIKSEFNDH
                     CASPY"
     gene            complement(1296..1382)
                     /locus_tag="PF788_002784"
                     /pseudo
     CDS             complement(1296..1382)
                     /locus_tag="PF788_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000790915.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1397..1723
                     /locus_tag="PF788_002785"
                     /pseudo
     CDS             1397..1723
                     /locus_tag="PF788_002785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012656145.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
BASE COUNT          586 a          268 c          268 g          610 t
ORIGIN      
        1 aaatttagag aattagtaaa acaatcatat gaggatttga aaaatttgac tgtaacttgg
       61 tataacgtca ttgctttaac aatacttgtt attgtattaa gctcattcac aacaccaatg
      121 ataggcattc cagctggttt attaggtggc gcctattatt taaaacgtcg tgaagaaaaa
      181 ggtaaataaa taagccttat gtgctaaact caatatgtat ttcctaccaa agaaaacata
      241 aggagtttgg acatcttgaa ggagatacta ttgttggtcg tcgtcatggt agtgcaatca
      301 ttactttggt agaaagagta tccaagatga ttatcacctt acgaccctta ggtcgtaagg
      361 caactgatat agaaaacgct ctacactcaa tgttttcatc tttaccttct catatattta
      421 aatcaattac ttttgattgt ggtaaggagt tctcaaactg gaaaacatta tgtaactgtc
      481 acgatatatc tatatttttt gctgatccag gcacgccatc acagcgaggt ttaaatgaac
      541 attctaacgg aatacttaga cgcagtggat tagataaaga actagatttc aatttagtaa
      601 cagacgatca tatcatcagt gttgctcaaa aaatcaatca tcgtcctaga aaatctttag
      661 gttatagaac accattggaa gtatttatga gtttcatcga agatgataaa cttgtccagc
      721 ttaatttgac aatctaaaga tttataaaaa agccgttggt ctcttcgaaa ctacggcttt
      781 tctctgtgct ataaaatcag tatggcgaag cacagtgatc attgaattct gactttatat
      841 aatcaagagt atctttggat acactgatga tatctataac agcattgcta atgtagaata
      901 tattttcttg attatagaat acaataaatg gctccactaa acctttttta atatataaag
      961 aataatcaat taagtctttg ttttttatat ttttaatagt tgcaataaca tacttctcat
     1021 cggtagaatg gatttcttcg taccagttag taatattaaa aaaacgacca attcttgttt
     1081 tttctctaaa tttaacagga tataagtatt cagacaaaaa tgtacatttc gtctttgatt
     1141 ggttattaaa tataacatta ataatattag aaatttgctt tttattgaga acatcaatat
     1201 ctaagcgtat cctatttttc tcaggtgctt gaaaataggg aatttcatgt tctaaatcaa
     1261 aatgtatttg ttgtgtttca aggttaataa tcattttaat ctccaattct ttttaggtta
     1321 gcatcgtatg taccacttct tgttttcttg ctacctaaat tcttaatact gcttgcacct
     1381 tttcatttta tcttctcata tatttaaatc aattactttt gattgtggta aggagttctc
     1441 aaactggaaa acaatatgta actgtcacga tatatctata ttttttgctg atccaggcac
     1501 gccatcacag cgaggtttaa atgaacattc taacggaata attagacgca gtggattaga
     1561 taaagaacta gatttcaatt tagtaacgga tgatcatatc atcagtgttg ctcaaaaaat
     1621 caatcatcat cctagaaaat ctttaggtta tagaacacca ttggaagtat ttatgagttt
     1681 catcgaagat gataaacttg tccagcttaa tttgacaatc taaagattta ta
//
LOCUS       DAMQWL010000235         1703 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.243, whole genome shotgun sequence.
ACCESSION   DAMQWL010000235 DAMQWL010000000
VERSION     DAMQWL010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.243"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            51..962
                     /locus_tag="PF788_002786"
     CDS             51..962
                     /locus_tag="PF788_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-hydroxamate ABC transporter
                     substrate-binding protein"
                     /protein_id="HDG6305007.1"
                     /translation="MKRLIGILLCNLFILTACSASVDKTSNSTKTTDYKIENGETLKV
                     PEKPKRVAVLTGFYVGDFIKLGIKPIAVSDITKDSSILKPYLKGVDYIGENDVERVAK
                     AKPDLIVVDAMDKNIKKYQKIAPTIPYTYNKYNHKEILKEIGKLTNNEDKAKKWIEEW
                     DDKTRKDKKEIQSKIGQATASVFEPDEKQIYIYNSTWGRGLDIVHDAFGMPMTKQYKD
                     KLQEDKKGYASISKENISKYAGDYIFLSKPSYGKFDFEKTHTWQNIEAVKKGHVISYK
                     AEDYWFTDPITLEHLRSKLKKEILNKK"
     gene            1024..>1703
                     /locus_tag="PF788_002787"
     CDS             1024..>1703
                     /locus_tag="PF788_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDG6305008.1"
                     /translation="MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDM
                     YKNVTCDDMSQIGISIRTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISW
                     IDLDVPESIEIRKTFFKESNSYKMISKSMLDYSWIDDVKNYKFFNSKSNILFIIEGVL
                     MYFDESVMTQLLDTIIKKMGDHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGY
                     NDLKKLNE"
BASE COUNT          720 a          175 c          287 g          521 t
ORIGIN      
        1 tattttataa ttgaaaatga atatcaattg aaaaacaaaa ggatgatatt atgaaaagat
       61 taattggaat tttattatgt aatttattta ttttgactgc gtgttcagca tctgtcgata
      121 aaacaagtaa ctcgacaaag actacagact ataaaattga aaatggtgaa acactgaaag
      181 taccagagaa acctaaaaga gttgctgtat taactggatt ttatgttggt gattttataa
      241 agttaggaat caaaccaatt gctgtttcag atataactaa agattcttca attttaaaac
      301 cttatttaaa aggggttgat tatattggag aaaatgatgt tgaaagagtt gctaaagcaa
      361 aaccagattt aattgttgta gatgctatgg ataaaaatat aaaaaaatac caaaaaatag
      421 cgccaacaat cccatataca tacaataaat acaatcataa agaaatatta aaagaaatag
      481 gcaagttgac taataatgaa gataaagcta aaaaatggat tgaagagtgg gacgataaaa
      541 ctagaaaaga taaaaaagaa attcaaagta aaattggtca agcaacagca tctgtgtttg
      601 aaccagatga aaagcaaata tacatatata actctacatg gggtcgtggt ttggatattg
      661 ttcatgatgc attcggtatg ccaatgacaa agcaatataa agataaatta caagaagata
      721 aaaaaggcta tgcttccatt tcaaaagaaa atattagtaa atatgctggt gattatatat
      781 ttttaagtaa accttcgtac ggaaaatttg attttgaaaa aacacataca tggcagaata
      841 ttgaagctgt aaaaaaagga catgtaattt catataaagc agaagattat tggttcacag
      901 atcctattac attagaacat ttgagaagta aattaaaaaa agaaatttta aataaaaaat
      961 aatagaaata agttgtaaaa attttcttat gcattggtac taatgttttt aaggagtgat
     1021 taaatgaagc aactggttgg aattcccgaa tcaatgttaa ttcctttgat agctcgagca
     1081 aaagagtacg aaaacgaaaa accaataata aaagacgcac tatcaaaaaa aatatttgat
     1141 ggtttagatg atatgtacaa aaatgttaca tgtgatgaca tgtctcaaat tggaattagt
     1201 atacgtactg tgataataga ttgtgttact aagaggctta tcaaggataa taaagattta
     1261 atcgtggtca atataggttg tggcttagat acaaggtttc aaagatttaa taaagaaaaa
     1321 atatcatgga tagatttaga tgtaccagaa tcaatagaaa tacgaaaaac attttttaaa
     1381 gaaagtaata gttataagat gatatctaaa tctatgctag attacagttg gattgatgat
     1441 gtcaaaaatt ataaattttt taatagtaag tcaaatatat tgtttattat tgaaggtgta
     1501 ttgatgtatt ttgatgagag tgtaatgact caattattgg acactattat caaaaagatg
     1561 ggagatcata atttgacatt tgcgattgaa ttttgctcaa aaacaattgc gaataataca
     1621 aagagacatc aatcggtatc aaagttatcc tcacaacctg tttttaaata tggttacaat
     1681 gatttaaaaa aattgaatga aat
//
LOCUS       DAMQWL010000236         1692 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.244, whole genome shotgun sequence.
ACCESSION   DAMQWL010000236 DAMQWL010000000
VERSION     DAMQWL010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.244"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            48..860
                     /gene="lpl8"
                     /locus_tag="PF788_002788"
     CDS             48..860
                     /gene="lpl8"
                     /locus_tag="PF788_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001797296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl8"
                     /protein_id="HDG6305009.1"
                     /translation="MGYIKRMALYMSVFLLIIFIVGCRNMKDEQKKEEQTNKTDSKEE
                     QIKKSFEKTLDMYPIKNLEELYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNE
                     GMVLYLDRNTRTAKGHYFVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDTNLKKRI
                     ENFKFFGQYANLKELKNYNNGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDK
                     APVLKMHIDGNLKGSSVGYKKLEIDFSKGGKSDLSVIDSLNFQPAKVDEDDE"
     gene            879..1664
                     /gene="lpl9"
                     /locus_tag="PF788_002789"
     CDS             879..1664
                     /gene="lpl9"
                     /locus_tag="PF788_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tandem-type lipoprotein Lpl9"
                     /protein_id="HDG6305010.1"
                     /translation="MKSIKRIGLCISLLILIIFVTSCDGDNKIIGDSKEEQIKKSFAK
                     TLDIYPIKNLEDLYDKEGYRDGEFKKDDKGTWLIRSEMKIQLKGENLESRGAVLEINR
                     NTRTAKGHYIVREVVEDSDGMTHNHTKRYPVKMENNKMIPLKPIDDEKVKKEIEEFNF
                     FVQYGNFKELENYKEDEVSYNPEVPIYSAKYQLKNSDYNVEQLRKRYNIPTQKAPKLL
                     LKGSGNLKGSSVGYKNIEFTFIENKEENIYFTDSIYFNPSEDK"
BASE COUNT          732 a          182 c          319 g          459 t
ORIGIN      
        1 gaactataca aatatttata aaaattaaaa cagagagatg tgaaatgatg gggtatataa
       61 aaagaatggc tttatacatg agtgtatttc ttttaatcat ttttattgtt ggatgtcgaa
      121 atatgaaaga tgaacagaaa aaagaagaac aaacaaataa aacagattca aaagaagaac
      181 aaatcaaaaa gagttttgag aaaacattag atatgtatcc aattaagaat ctcgaggagt
      241 tatacgacaa agaaggatac cgagatggcg aatttaaaaa gggtgataaa gggatgtgga
      301 cgatatatac agatttcgcc aaaagtaata aacaaggtgg attgagtaat gaaggtatgg
      361 tcttatactt agatagaaat acacggactg caaagggaca ttattttgtt aagacattct
      421 ataataaggg caaattccca gatagaaaaa attataaagt tgaaatgaaa aataataaaa
      481 ttatcttatt agataaagta gaagatacaa atctaaaaaa gagaatagaa aactttaaat
      541 tttttggaca atatgcaaac cttaaagaat tgaaaaacta caacaatggt gatgtctcaa
      601 ttaatgagaa tgttccaagt tatgacgcaa aatttaaaat gagcaataaa gatgaaaatg
      661 ttaagcaatt aagaagtcgt tataatattc ctactgataa agcaccggta ttaaaaatgc
      721 atattgatgg taatttgaaa ggaagttctg tgggttataa aaagttggaa attgactttt
      781 caaaaggtgg aaaaagcgat ttgtcagtaa tagattcttt gaatttccag ccggcgaagg
      841 tagatgaaga tgatgaatga tgaggatggt gtgtaacaat gaagtctata aaaaggattg
      901 gattgtgcat tagtttgttg attttaatca tctttgttac atcttgtgat ggtgataata
      961 agatcattgg agattcaaaa gaagaacaaa tcaaaaagag ctttgcgaaa acgttagata
     1021 tctaccctat taagaatctc gaggatttat acgacaaaga aggatatcga gatggcgaat
     1081 ttaaaaaaga tgataaaggt acttggctaa ttagatctga aatgaaaatc caattaaaag
     1141 gagaaaatct ggaatctaga ggagcagttt tagaaattaa cagaaatact agaacggcta
     1201 aagggcatta tattgttaga gaagttgttg aagatagcga tggaatgaca cacaatcata
     1261 caaaaagata tcctgtgaaa atggaaaata ataaaatgat tccattaaaa ccaatcgatg
     1321 acgaaaaagt aaaaaaagaa atcgaagaat ttaacttctt tgtacaatac gggaatttca
     1381 aagaattgga aaactataaa gaggacgaag tgtcatataa cccagaagta ccaatttact
     1441 ctgcaaaata tcaattgaaa aacagtgatt acaatgttga acaattaagg aagcgatata
     1501 atatcccgac gcaaaaagcg cccaaattat tattgaaagg ctcaggtaat ttaaaaggtt
     1561 catcagtcgg atataaaaat attgaattta cctttattga aaacaaggaa gaaaatattt
     1621 acttcacaga tagtatctac tttaatccaa gcgaggataa ataaatataa ttactaatat
     1681 aaaaaataac gt
//
LOCUS       DAMQWL010000237         1632 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.245, whole genome shotgun sequence.
ACCESSION   DAMQWL010000237 DAMQWL010000000
VERSION     DAMQWL010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.245"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1372
                     /locus_tag="PF788_002790"
     CDS             <1..1372
                     /locus_tag="PF788_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001837660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDG6305011.1"
                     /translation="SIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQ
                     LSKLQSLFIITFIAQLASFIVAIPSFHQLQWVGFLSNLIFVPYYSIILFPLSILFFIT
                     SHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIVFIISVYYIFW
                     LLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTG
                     GKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKH
                     IVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNE
                     YSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEM
                     IKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSSSY
                     GNASGL"
     gene            1429..>1632
                     /locus_tag="PF788_002791"
     CDS             1429..>1632
                     /locus_tag="PF788_002791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDG6305012.1"
                     /translation="MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYE
                     TEIAPIVEETLTLPFFSDKKAILV"
BASE COUNT          573 a          204 c          260 g          595 t
ORIGIN      
        1 gagtattcag ctattagcat ttgcatttat aattatgttt attttaaatc cactagttgt
       61 ttatgatatt ggatttcaat tttcattcat catttcattt tttattatgc tactttttcc
      121 ttttttacag caattgtcaa agttacaatc attattcata attacgttta ttgcacaatt
      181 agcttcattt atcgttgcca ttccaagctt tcatcaactt caatgggtgg gatttttatc
      241 taatttgatt tttgtaccgt actattcgat tatattgttt ccgctatcta ttttattctt
      301 tattacaagt cattttattg tgggattaac gccgctaaat tacttggttg acctaagttt
      361 taattttcat gactggttac tagacctatt cacaagaatc aagcaatcac atttttctgt
      421 tcccaagttt aatgattgga tatttatagt atttataatt tctgtttatt acatattttg
      481 gttattggct aaacgtaaat atatattggt tacgttttgg actataatta ttctgacatt
      541 attaataacg tttccaacaa attcacatca caaaattaca atgttaaatg tggggcaggg
      601 agacagtatt ttatatgaag gcggtaagaa ccaaaatgtc ttgattgata caggtgggaa
      661 agtgattgat gatactaaac aacctagtta ttcaatttct aaatatcata ttttaccaac
      721 gctaaatgaa agagggataa atgaattaga gtatctaatt ttaacacatc cacacaatga
      781 ccatattggt gaagtggaat atattattag tcatattaaa attaaacata tagtgatata
      841 caataaggga tatagtagta atacattgat gttattatcg aaattaagcc ataagtacaa
      901 cattaaactt atggatgtaa gacaagttag tagttttaaa cttggagata gtagttttct
      961 attttttgat agttttattc caaatagccg agataaaaat gagtattcga ttattactat
     1021 gattacatat caaaataaaa aagttttatt aatgggcgat gctagtaaaa ataatgaatc
     1081 tttactacta aaaaaatata acttgccgga gattgatatt ttaaaagtag gacatcatgg
     1141 gagcaagaca agtagttcta aagaatttat agagatgatt aagcctaaaa taagtttgat
     1201 ttcttctggg aagaacaata tgtatcatct tcctaatata gaagttgtta aacgattgca
     1261 aaggattcgc agtcgcattt acaatagtca acaaaacggt caagttacaa ttgacttaga
     1321 tgataattta aaagttgatt caagctctta tggaaatgca agtggtttat agatacagaa
     1381 acatgatata atctattgat gtgtcaaacg aatgaaaggg tgtaatgaat gagcgacaat
     1441 attgtagcta tttatggaga tgtgcctgaa ttggttgaaa aacaaagtgc agaaatcata
     1501 tcacaatttt tgaaaagtga tagagatgac tttaactttg tgaaatataa tttatacgaa
     1561 acagagattg caccaattgt tgaagaaaca ttaacattgc ctttcttttc agataaaaaa
     1621 gcaattttgg tt
//
LOCUS       DAMQWL010000238         1595 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.246, whole genome shotgun sequence.
ACCESSION   DAMQWL010000238 DAMQWL010000000
VERSION     DAMQWL010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.246"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            240..956
                     /locus_tag="PF788_002792"
     CDS             240..956
                     /locus_tag="PF788_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDG6305013.1"
                     /translation="MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESN
                     QALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNN
                     VNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVND
                     VIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKL
                     IDALEDLEDVQNVFHNVDLK"
     gene            956..1429
                     /locus_tag="PF788_002793"
     CDS             956..1429
                     /locus_tag="PF788_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDG6305014.1"
                     /translation="MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFL
                     LTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYVVPK
                     GTIFASSIEISNTFSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK"
BASE COUNT          566 a          199 c          319 g          511 t
ORIGIN      
        1 ctaaatttaa tgctttattt gaagatgtag aacaattttt aaatatttaa ttgaaattga
       61 gtgtcgaaag catagaattt gcttatcggc acatttttaa tttatacata ttttaaaact
      121 aagtaacagt ttgaagaaat cgtagttcaa taatgttaat tgtgaaaatg tatataaaca
      181 taaaaaaatc atgtataata tatgttgtta attaaacagt tcgaaagcga gatgacatta
      241 tgggacgtaa atggaataac attaaagaaa aaaaggccca aaaagataaa aacacaagta
      301 gaatatatgc gaaatttggt aaggagattt atgttgcagc aaaatctggt gaacccaatc
      361 cagaatctaa ccaagcttta aggttggtgc ttgaacgcgc taagacatat tcagtgccga
      421 atcatattat tgaaaaagca atagataaag ctaagggtgc tggagacgaa aactttgatc
      481 acctaagata tgaaggattt ggcccaagcg gatcaatgct aattgttgat gcgttaacaa
      541 ataatgtaaa tcgtactgcc tctgatgtgc gagctgcttt tggtaaaaac ggcggtaata
      601 tgggtgtatc tggatcagtt gcttatatgt ttgatcatgt ggcaacattt ggtattgaag
      661 gaaagtctgt tgacgaaata cttgaaacat taatggaaca agatgtagat gtaaatgatg
      721 tgattgacga taatggattg acaatagtct atgctgaacc agatcaattt gcagtcgttc
      781 aagatgcgct tcgtgcagca ggtgttgaag aatttaaagt tgctgaattt gaaatgttac
      841 ctcaaacaga tattgaactt tctgaagcgg accaagtaac atttgaaaaa ttaatcgatg
      901 cattagaaga tttagaagat gtacaaaacg tattccataa tgtggatttg aaataatgaa
      961 atcagcagaa caatggattg atgaattgca acttgaatca catcctgaag gtggtttcta
     1021 tagagagaca attcgagaag tattgaaaga tggacgcaga gcgccgttta gtagtattta
     1081 ttttttactt acagatgaca atatttcgca ttttcatcga attgatgctg atgaagtatg
     1141 gtactatcat gctggcgatt ctctaacaat tcatatgata aatccggatg gggaatatac
     1201 gactgcaaca ttgggtactg atatccaaaa tggagatgta ttgcaatatg tagtgcctaa
     1261 aggaacaatt tttgcttctt caatcgaaat atcaaatact tttagtttag taggttgtat
     1321 gtgtcaaccg gcatttgagt ttaagcagtt tgaattgttt aagcaatctg aattaattac
     1381 gcaatatccg catcttaaat cagtaatcga aaaatatgct ttaaaataaa agtgatcaat
     1441 gaagtggttt gaaggttgtt aataaacctt tgagtcactt catttttata tgtattcttg
     1501 attgaatcag aatagatttg atgcttcagc tgtttttaat gaaaatagca ttaaatgatt
     1561 ttgaaaacga taagagtgtg ttatttatat ttttg
//
LOCUS       DAMQWL010000239         1572 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.247, whole genome shotgun sequence.
ACCESSION   DAMQWL010000239 DAMQWL010000000
VERSION     DAMQWL010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.247"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            66..1572
                     /gene="sasG"
                     /locus_tag="PF788_002794"
                     /pseudo
     CDS             66..1572
                     /gene="sasG"
                     /locus_tag="PF788_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501257.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG-anchored surface protein SasG"
BASE COUNT          651 a          211 c          314 g          396 t
ORIGIN      
        1 atttgtaaaa ttacatgtaa attcactgta agcaaagtgg aaaatatgga aaaaggagta
       61 tgcaaatgag agataagaaa ggaccggtaa ataaaagagt agattttcta tcaaataaat
      121 tgaataaata ttcaataaga aaatttacag ttggaacagc atctatttta attggctcac
      181 taatgtattt gggaactcaa caagaggcag aagcagctga aaacaatatt gagaatccaa
      241 ctacattaaa agataatgtc caatcaaaag aagtgaagat tgaagaagta acaaacaaag
      301 acactgcacc acagggtgta gaagctaaat ctgaagtaac ttcaaacaaa gacacaatcg
      361 aacatgaacc atcagtaaaa gctgaagata tatcaaaaaa ggaggataca ccaaaagaag
      421 tagctgatgt tgctgaagtt cagccgaaat cgtcagtcac tcataacgca gagacaccta
      481 aggttagaaa agctcgttct gttgatgaag gctcttttga tattacaaga gattctaaaa
      541 atgtagttga atctacccca attacaattc aaggtaaaga acattttgaa ggttacggaa
      601 gtgttgatat acaaaaaaaa ccaacagatt taggggtatc agaggtaacc aggtttaatg
      661 ttggtaatga aagtaatggt ttgataggag ctttacaatt aaaaaataaa atagatttta
      721 gtaaggattt caattttaaa gttagagtgg caaataacca tcaatcaaat accacaggtg
      781 ctgatggttg ggggttctta tttagtaaag gaaatgcaga agaatattta actaatggtg
      841 gaatccttgg ggataaaggt ctggtaaatt caggcggatt taaaattgat actggataca
      901 tttatacaag ttccatggac aaaactgaaa agcaagctgg acaaggttat agaggatacg
      961 gagcttttgt gaaaaatgac agttctggta attcacaaat ggttggagaa aatattgata
     1021 aatcaaaaac taatttttta aactatgcgg acaattcaac taatacatca gatggaaagt
     1081 ttcatgggca acgtttaaat gatgtcatct taacttatgt tgcttcaact ggtaaaatga
     1141 gagcagaata tgctggtaaa acttgggaga cttcaataac agatttaggt ttatctaaaa
     1201 atcaggcata taatttctta attacatcta gtcaaagatg gggccttaat caagggataa
     1261 atgcaaatgg ctggatgaga actgacttga aaggttcaga gtttactttt acaccagaag
     1321 cgccaaaaac aataacagaa ttagaaaaaa agttgaagag attccattca agaaagaacg
     1381 taaatttaat ccggatttag caccagggac agaaaaagta acaagagaag gacaaaaagg
     1441 tgagaagaca ataacgacac caacactaaa aaatccatta actggagtaa ttattagtaa
     1501 aggtgaacca aaagaagaga ttacaaaaga tccgattaat gaattaacag aatacggacc
     1561 tgaaacaata gc
//
LOCUS       DAMQWL010000240         1570 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.248, whole genome shotgun sequence.
ACCESSION   DAMQWL010000240 DAMQWL010000000
VERSION     DAMQWL010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.248"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1142
                     /locus_tag="PF788_002795"
     CDS             <1..1142
                     /locus_tag="PF788_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDG6305015.1"
                     /translation="NSNSKYLRAPSIRQFSNRMNNLDDCVNLTIGQPDFPMPDVVKKA
                     YIDAINNDKTSYSHNKGLLETREAISQYFKNRYHFSYDPEEIIVTNGASEAIDTTLRS
                     IIEPGDEIIIPGPIYAGYIPLIEVLGGKPIYIDTTATQFKITPDALESHISPKTKAVL
                     LNYPTNPTGVVLKRNEVLNIVNVLKKYPLFIISDEIYAENTFSGKHVSFAEFEDIRDQ
                     LILIGGLSKSHSATGIRIGFLLGPQYLIDKLTFMHAYNCICANVPAQIACITALNEGL
                     EAPKYMNEAYVERRNYLVSELTKLGFEITAQPEGAFYIFPSIKHITDDDFEFCVDLLE
                     STHLAIVPGSSFTEFGKGFVRISYAYEMDVLKEGMKRLAKYLNTK"
BASE COUNT          562 a          253 c          222 g          533 t
ORIGIN      
        1 taaattctaa ttctaaatat ttaagagcac caagtattcg ccaattttca aatcgtatga
       61 ataatttgga tgattgtgtt aatttaacta ttggccaacc agacttcccg atgcctgatg
      121 ttgtgaaaaa ggcatatatt gatgctatta acaatgacaa gacatcatac tctcacaata
      181 aagggttatt agaaactcgc gaagcaatta gtcaatactt caaaaatcgt tatcattttt
      241 cctatgatcc tgaagaaatt attgtgacaa atggagcaag tgaagcaata gacacaacgt
      301 tacgttctat catagagcct ggagatgaaa ttataatacc gggaccaatt tatgcaggct
      361 acataccact catcgaagta ctaggtggta aaccaattta tattgataca acagcaacac
      421 aatttaaaat tacacctgat gcattagaaa gtcatatttc tccaaagaca aaagctgtct
      481 tgttaaatta tccgactaat ccaactggcg tagttttaaa aagaaatgaa gttttaaata
      541 tcgtaaatgt attaaaaaaa tatccgttat ttattattag cgatgagatt tatgctgaaa
      601 atacatttag tggtaaacat gtatccttcg ctgaatttga agacattcgt gatcaattaa
      661 tattaattgg tggtttaagt aaatcacact cagcaaccgg aataagaatt ggttttctat
      721 taggacctca atatttgatt gataaattaa catttatgca cgcctataat tgtatttgtg
      781 ccaatgttcc agctcaaata gcatgtataa cagcacttaa cgaaggatta gaagctccta
      841 aatatatgaa cgaagcttat gtagaacgaa gaaattattt agtatctgaa ttaactaaat
      901 taggttttga gattaccgct caacctgaag gcgcgtttta tattttccca agtattaaac
      961 atatcaccga tgacgatttc gaattttgtg tcgatttact tgaatcaaca catttagcaa
     1021 tcgttccagg ctcatccttt acagaattcg gtaaaggatt tgtaaggatt tcctatgctt
     1081 atgaaatgga tgttttaaaa gaaggtatga agagacttgc taaatattta aatactaaat
     1141 aaaaatgata tgttgaactg gacgtcgtga actaaattca tagtacgttc agttttttat
     1201 attctataag ttttaaataa tactctatag agactgtaaa tactaccgag ttatattcct
     1261 ctcctttaaa cacctcactc aaaatgattc tatcaaaagg ttttaatatg ctaacttata
     1321 attgttcttc gaaacttaag cactcaaata atatatcacc attcatatta atctaccttt
     1381 ggccaaacaa ttattattca aaagttacta tttattatta taaacaaata ctttccattc
     1441 gctctcaatt cctttcttat ttattctttt agataaatgc aaacaattga cgatcttatc
     1501 aatttaactc aattgaataa agtataatac aattcaattt taattccctt aatgtttttg
     1561 taaactctaa
//
LOCUS       DAMQWL010000241         1537 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.249, whole genome shotgun sequence.
ACCESSION   DAMQWL010000241 DAMQWL010000000
VERSION     DAMQWL010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.249"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            113..841
                     /locus_tag="PF788_002796"
     CDS             113..841
                     /locus_tag="PF788_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5067 domain-containing protein"
                     /protein_id="HDG6305016.1"
                     /translation="MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNE
                     ELKEFKSKKNMDIKIKGDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDK
                     DLNPSSISHDYINITQDDKNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFI
                     YELRGDGNINLNVHKYSEDKTVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEY
                     KKEQEREKEKEKQKDDDHSGLDEV"
     gene            926..1179
                     /locus_tag="PF788_002797"
                     /pseudo
     CDS             926..1179
                     /locus_tag="PF788_002797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728980.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1195..1518
                     /locus_tag="PF788_002798"
     CDS             1195..1518
                     /locus_tag="PF788_002798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305017.1"
                     /translation="MNNEELEMRLLLMKQSIEQLQEELAPNLKTRDLVLLRYMYSYKE
                     INMLDSYLFQLATNKEQITKKQFKTKLENIREVPEIPIRQVNDILEGYKNSELYVELI
                     NSILK"
BASE COUNT          697 a          164 c          253 g          423 t
ORIGIN      
        1 tttaatatca tcttagaatc tcacaaaata tcaactttgt ttaattactc aaaatgataa
       61 gtcatttaga gtttttaaaa taaatttttg cgaaataaag gagacatgtt aaatgaaaaa
      121 agtaatgggg atattattag caagtacact tatcttaggt gcttgtggac atcatcaaga
      181 tagtgcaaaa aaagagagca ctagtcacaa aaagaaagaa aatgacaatg aagaattaaa
      241 tgaagaactt aaagaattta aaagcaaaaa aaatatggat ataaaaatta aaggcgatac
      301 tattgttagt gacaaatttg aagctaaaat aaaagaaccg tttatcatca atgaaaaaga
      361 tgagaaaaag aaatatatcg cttttaaaat ggaaattact gctaaaaaag acgataaaga
      421 tttaaatcca tcttctattt ctcatgacta tattaatatc actcaagatg ataaaaatac
      481 agtaaataaa ttaagagatg gttatctttt aagtgataaa aaatataaag attggacaga
      541 acataaccaa gatcaaatta aaaaaggcaa aactgcacaa gccatgttta tctatgagtt
      601 aagaggtgat ggaaatatta atttaaatgt ccataaatac tcagaagata aaacagttga
      661 ttctaaatca ttcaaattta gtaaacttaa aaccgaagat ttttctcata gagcggaaac
      721 aagagaagaa gtagaaaaga aagaaaaaga atttgaagaa gagtacaaaa aagaacaaga
      781 acgagagaaa gaaaaagaaa agcaaaaaga tgacgaccac agtggtttag atgaagtata
      841 aatttggttt gttgattgtc ttacattcag ttatttaatt tttagagaaa ctgacttatt
      901 tatagcttag ccaacatgat actataaagc tatgattaaa aataaaaaat ctgtgtttaa
      961 tggtgttaaa gaaatcagtc cccgtgccgg aaaatcataa aaaaaagatg ggataaattt
     1021 gtaaatcccg cattgaataa tgcattaaaa caagaagagg ctacatgggg aaatgtacaa
     1081 ggtcaagttt cacaagcatt gatgggaact ggtattaaag attctactgc aagaagcata
     1141 gggttttggg tttcccaagt tggtcaagca ttaatataaa aagagtgtga taaaatgaat
     1201 aatgaagaat tagaaatgag attgttatta atgaaacaat caatagaaca attacaagaa
     1261 gaactagcgc ctaacttaaa aactagagat ttagtgttat taagatatat gtattcatat
     1321 aaagaaatta atatgctaga ttcttacttg ttccaattgg ctacaaataa agagcaaata
     1381 acaaaaaaac aatttaaaac aaaattggaa aacattagag aagtaccaga aatacctatt
     1441 agacaagtta atgatatatt agaaggttat aaaaatagtg agttatatgt tgagttgata
     1501 aatagcatcc taaaataaaa ataaacatac taagatt
//
LOCUS       DAMQWL010000242         1529 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.250, whole genome shotgun sequence.
ACCESSION   DAMQWL010000242 DAMQWL010000000
VERSION     DAMQWL010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.250"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..657
                     /gene="pyrF"
                     /locus_tag="PF788_002799"
     CDS             <1..657
                     /gene="pyrF"
                     /locus_tag="PF788_002799"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDG6305018.1"
                     /translation="SKEKVNQFLDLFDESLFVKVGMELFYQEGPQLINEIKERGHDVF
                     LDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQDTKIIAVT
                     QLTSTTEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFL
                     KVTPGIRPKGASQNDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
                     "
     gene            657..1268
                     /locus_tag="PF788_002800"
     CDS             657..1268
                     /locus_tag="PF788_002800"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDG6305019.1"
                     /translation="MAKEIAKSLLDIEAVTLSPNDLYTWSSGIKSPIYCDNRVTLGYP
                     LVRGAIRDGLINLIKEHFPEVEVISGTATAGIPHAAFIAEKLKLPMNYVRSSNKSHGK
                     QNQIEGAKSEGKKVVVIEDLISTGGSSVTAVEALKLAGAEVLGVVAIFTYGLKKADDT
                     FSNIQLPFYTLSDYNELIEVAENEGKISSEDIQTLVEWRDNLA"
     gene            1298..1510
                     /locus_tag="PF788_002801"
     CDS             1298..1510
                     /locus_tag="PF788_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305020.1"
                     /translation="MNDKTSNDLYGKIKHCNEFINHSNDSNLSSSHDVDESSTKQKHI
                     KNKTTIDHNDDLFKHVKDILRKQEQI"
BASE COUNT          590 a          213 c          284 g          442 t
ORIGIN      
        1 tcaaaagaaa aagtaaatca atttttagat ttatttgatg aatcattatt cgtaaaagta
       61 ggtatggaac ttttttatca agaaggtcct caattaatta atgagataaa agaaagaggc
      121 catgatgtat ttttagattt aaaactgcat gatattccta atacagttgg taaggcgatg
      181 gaaggactag ctaaattgaa tgttgatctg gtaaatgttc atgctgctgg tggcgtaaaa
      241 atgatgtctg aggccattaa aggattaaga aaacataatc aagatacaaa aattattgca
      301 gtaacacagc ttacgtcaac aacagaagac atgttacgac acgaacaaaa tatacaaaca
      361 tcgattgaag aggccgtttt aaattatgcc aagttagcaa atgcagctgg tttagatggc
      421 gttgtttgtt cacctcttga aagtcgtatg ttgactgaaa agttaggtac atcattttta
      481 aaagtaacac caggtattag acctaaaggt gcatctcaaa atgaccaaca ccgtattacg
      541 acaccggaag aagcaagaca gcttggttcg acgcatattg tagtcggtag accgattaca
      601 caaagtgaca atccagtcga aagttatcat aaaattaaag aaagttggtt agtataatgg
      661 ctaaagaaat tgcaaaatca ttattagata ttgaagctgt aacattatca ccaaatgatt
      721 tatatacatg gagttcaggt attaaatcac cgatttactg tgataaccgt gttacgttag
      781 gttatccttt agttcgaggc gcaatccgcg atggtttaat taacttaatt aaagaacact
      841 ttcctgaagt agaagttatt tctggtactg caacagctgg tattccacat gcagctttta
      901 ttgctgaaaa attaaaatta ccaatgaatt atgttcgttc atcaaataag agtcatggta
      961 agcaaaatca aatcgaaggt gctaaaagtg aaggtaaaaa agtagttgtg atagaagatt
     1021 taatttcgac agggggatct tcagtcacag cagttgaagc cttaaaacta gcaggtgcag
     1081 aagtattagg tgttgtagct atctttactt acggtttgaa aaaagcagat gatacattta
     1141 gcaatattca actacctttt tacactttaa gtgattacaa tgaattaatt gaagtagctg
     1201 aaaatgaagg taaaatttct agtgaagata tccaaacatt agttgaatgg agagacaact
     1261 tagcataata tagacactag aaggaggaat tcaacaaatg aatgacaaaa catctaatga
     1321 tttatatggg aagataaaac attgtaacga atttatcaat cattcaaatg attccaatct
     1381 atctagtagt cacgatgtcg acgaaagttc aacgaagcaa aaacatataa aaaataaaac
     1441 aactatagat cataatgatg atttatttaa acatgtaaag gatatattac gtaaacaaga
     1501 acaaatttaa aaacaaaaaa gctatagtg
//
LOCUS       DAMQWL010000243         1483 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.251, whole genome shotgun sequence.
ACCESSION   DAMQWL010000243 DAMQWL010000000
VERSION     DAMQWL010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.251"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            419..679
                     /locus_tag="PF788_002802"
     CDS             419..679
                     /locus_tag="PF788_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305021.1"
                     /translation="MCIVIYLIYSLIVYFICIINFFIMAAPFLMTNADYVWTPMTTVT
                     LFILSLIIFLIFIKTKDVVHLTIFILNLLFSILYCLPILFYL"
     gene            complement(732..1082)
                     /gene="scn"
                     /locus_tag="PF788_002803"
     CDS             complement(732..1082)
                     /gene="scn"
                     /locus_tag="PF788_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complement inhibitor SCIN-A"
                     /protein_id="HDG6305022.1"
                     /translation="MKIRKSILAGTLAIVLASPLVTNLDKNEAQASTSLPTSNEYQNE
                     KLANELKSLLDELNVNELATGSLNTYYKRTIKISGQKAMYALKSKDFKKMSEAKYQLQ
                     KIYNEIDEALKSKY"
BASE COUNT          481 a          205 c          193 g          604 t
ORIGIN      
        1 gaaagtgaaa agggttgttt atggggcatt agcatgttga ttctactttt cttattgatt
       61 ctgtttggaa taactgcttg ttcatcaagc attcacttta ttaattagat ttttttactt
      121 ggaggtatca tgtgaagaac catacaaata taattaatat cttattagtt atagtcaact
      181 cattaactca ttttctaact ctaaacacct cattttttaa taattcagca tcggatttct
      241 gttttatcat aggggctata tttttcttaa tcggaatttt tgttgcaata tacggtatga
      301 agcgagcaac atattggtta aacttattga ttttatttac caatattttt tattttctac
      361 acttctgtgt gttacttttg ttaaaatata taggatttaa attatttatt tatgaagggt
      421 gtgtattgtt atttatctaa tttatagtct aattgtctat ttcatctgca ttataaattt
      481 tttcataatg gctgcaccat tcttaatgac taatgctgat tatgtatgga cgcctatgac
      541 tacagttacg ttatttattt tgagtttgat tattttcttg atatttataa aaacaaaaga
      601 tgtcgttcat ttaacaattt tcatattaaa cttacttttt tcaatacttt attgtttgcc
      661 tatactgttt tatttatgaa cacttttata ttatctagaa aattaaaacc acccgtaaaa
      721 gggtggtttt tttaatattt actttttagt gcttcgtcaa tttcgttata aatcttttga
      781 agttgatatt ttgcttctga cattttctta aagtcttttg acttaagagc atacattgct
      841 ttttgacctg aaatttttat agttcgctta taataagtgt ttaaacttcc agtagctaat
      901 tcattaacat ttagttcatc taataacgat tttaattcat tagctaactt ttcgttttga
      961 tattcattcg atgttggcaa gcttgtgcta gcttgtgcct catttttatc tagattagtt
     1021 actagtggtg atgctaaaac gattgctaaa gttcccgcaa gtatagattt tctaattttc
     1081 attttttatt ctccttagta attagtacta atttatttta atgactgact aaaaaaaagt
     1141 acattaatta ttcattaact atatagatct tcttattaaa tgaaaattaa taaattatca
     1201 aattgacata ccttattgta tttatagaaa aacaaaaaaa ggtaagcacc gaaatgctta
     1261 cctacttccc ataaacaata taacacatat acattgattt ggaaagcgca aaaataaatt
     1321 taatatacta gcccgaaggg gagcaataca taaaaaatga aaggcgctcc ttgaaaacgc
     1381 ccaaggtaat attaacataa aatggctact attgcattat ctaattttat ttaattaaaa
     1441 caaatatata tagcacaaaa aaactagccc gaaggctagc tta
//
LOCUS       DAMQWL010000244         1473 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.252, whole genome shotgun sequence.
ACCESSION   DAMQWL010000244 DAMQWL010000000
VERSION     DAMQWL010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1473
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.252"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            65..>1473
                     /locus_tag="PF788_002804"
     CDS             65..>1473
                     /locus_tag="PF788_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDG6305023.1"
                     /translation="MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKII
                     EDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLL
                     LKLTYRYLDNQPLNDADIRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYI
                     YQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDST
                     ISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKYNKCLMLKPEPLVGKMVQEVKE
                     IILNYIEHYKNHLTDVIHIDEDKFETPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKN
                     SQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESDLKIAFNINNIETTYFVEEAFMSVF
                     RQISPNELSNHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFEKPS
                     VFKSLVSQIKRLKFDSLII"
BASE COUNT          588 a          181 c          218 g          486 t
ORIGIN      
        1 taaataagtt aaatattata gggaatgata aaagtggtac ttaaatatag aaagaggtaa
       61 agttatggca aaatcatgct tgcatatact tactaataat gaatatgcga caacgcgttg
      121 ccaagatggc atagtcttat tttggccaat tgacggggaa atcgaactac aaaaatttcg
      181 taaaagtaaa ataattgaag atgatatata tattattaat catctggatg tatttagtat
      241 taagaataat aaaaaaacga tcatgttgta tttgagtagc gattggtttg cggaattagg
      301 ctttactttc tttaattacc actatacagc aaagttgatt aaatcatcct ataatttgaa
      361 atgtctacta ttaaaattga catatcgata ccttgataat cagcctctta atgacgctga
      421 tattagaaaa ttacaggata ttattaaaat cattgcaaaa gaagcaagta tggataaaaa
      481 gattgcacaa aatcaatatc gatatgcgta ttatggtgat ttgcgtgatg agctcgaata
      541 tatttatcaa aatgtaaatc aacgattgac attaaaaagt gtcgctgata aattatttgt
      601 ctcaaagtca aatttgtcat cacaattcca cttacttatg ggcatgggtt ttaaaaaata
      661 tattgatact ttgaaaattg gtaaatcgat tgaaattcta cttactactg atagtactat
      721 tagcaacata agtgaacatt taggttttag tagtagctcc acttactcta aaatgtttaa
      781 aagttatatg gatataacac cgaatgaata tcgtaattta tcaaaatata ataaatgttt
      841 aatgctaaag ccagaaccac tagtaggcaa aatggtgcaa gaagtaaaag aaatcatatt
      901 gaattatatt gaacattata aaaaccacct aactgatgtt atacatattg atgaagacaa
      961 atttgaaaca cctaaattgt ttcaaacggt tattcaaata aatacttata cagaaatgaa
     1021 attagttttc ttagaaggaa tctttaaaac cttattgaat aagaacagtc aagttgtctt
     1081 tttcatcatg ccatcgattc taaaaagtaa aaataccatg tccgaagaag aaaaattcac
     1141 aatcattaaa acaataattg aaagtgatct aaagatagca tttaatataa ataatattga
     1201 aacaacttat tttgttgaag aagcttttat gagtgttttc agacaaatat ctccaaacga
     1261 attaagtaat cataataatt acgaagtgca ttttgttttt gatttatcat tgatggaaat
     1321 tagaacaatt tatcgaatga tattaaaatt acataacatc atgttgaatg tgaaattagg
     1381 attgaacatt acctgtttat ttgaaaaacc ttcagttttt aaatcactag tatcacaaat
     1441 aaagcgactt aaattcgatt cgttaataat aga
//
LOCUS       DAMQWL010000245         1467 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.253, whole genome shotgun sequence.
ACCESSION   DAMQWL010000245 DAMQWL010000000
VERSION     DAMQWL010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.253"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..506)
                     /locus_tag="PF788_002805"
     CDS             complement(<1..506)
                     /locus_tag="PF788_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDG6305024.1"
                     /translation="MSNTQKKNVPELRFPGFEGEWEEKQLGDLTDRVIRKNKNLESKK
                     PLTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRY
                     DSGVLSSLYICFSIKSEMSKDFMEAYFDSTHWYREVSGIAVEGARNHGLLNVSVNDFF
                     TILIKYPS"
     gene            complement(499..>1467)
                     /locus_tag="PF788_002806"
     CDS             complement(499..>1467)
                     /locus_tag="PF788_002806"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000028656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDG6305025.1"
                     /translation="GKKAGEFYTPQQVSKILAKIVTDGKDKLRHVYDPTCGSGSLLLR
                     VGKETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFDIRNDDTLENPAFLGNTFDAV
                     IANPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDDEGTMAVVLPH
                     GVLFRGAAEGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVFKKCRQQDDNVLF
                     IDASNDFEKGKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRY
                     VDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKDE"
BASE COUNT          413 a          297 c          229 g          528 t
ORIGIN      
        1 aaacttggat atttaattag aatagtaaaa aaatcattca cagaaacatt taataatccg
       61 tgatttcttg caccctcaac tgcaattcca gaaacttctc tataccagtg tgtcgaatca
      121 aaatatgctt ccatgaagtc tttagacatt tcacttttaa tagaaaaaca aatatacaaa
      181 gaggacaata caccactatc atatctagtt aatcttttaa tagcccctaa tgggtatcca
      241 ttagaataac ttttgttata cgcgaattct ccattcttta ttagtgtata attttctaga
      301 tttttcgacg aaactgattt actaaaatat tctgtttgat caattaaacc taactgtccg
      361 gatattgtta aaggcttttt cgattctaag tttttatttt tcctaattac tctatctgta
      421 agatccccta actgcttctc ttcccattcg ccttcaaacc ctgggaacct caattctggc
      481 acatttttct tttgtgtatt actcatcttt caacacccca agttctttca ggtatgcatt
      541 gatttcttgc tcaatttctg cgatttcttt atcgatattt ttcaaatctt gttggacttg
      601 atctaaatca atcggtgctt cttcttcgaa tgtatcgaca tatctcggta tatttaggtt
      661 gtaatcgtta tcggcaatct cttgtagtgt cgcgctgtag ctatatttat caattgtttc
      721 cttacgctta tatgtgtcta taatacgttc gacttgggca tcgcttaaat gattttgatt
      781 ttttcctttt tcaaaatcat tggatgcatc gataaatagt acgttgtcgt cttgttggcg
      841 acatttttta aatactaaaa tacatgttgg aatacttgtc ccatagaaaa tattcgctgg
      901 caaaccaatc acagcttcta agtagttctt ttcttcaatt aaataacgac gaatgacacc
      961 ttctgcagca cctcggaata atacaccatg tgggagtaca acggccatgg taccttcatc
     1021 gtctaggtaa tgtaccatgt gttgaataaa ggcaaagtct gctttagact taggcgcaag
     1081 tttgccgtaa ccactgaatc gttcgtcatt ttcaaacttt gaatctgcag tccatttcgc
     1141 actatacggt gggttcgcaa taaccgcatc aaatgtattg cctaaaaagg ctgggttttc
     1201 caatgtgtca tcattacgga tatcgaagtt ctcataacgc acatcatgta ataacatatt
     1261 catgcgtgct aagttgtatg tagtattgtt acgttcttga ccgaaataac gatacacttg
     1321 tgtttcttta ccaacacgta acaacagtga acctgaacca catgttgggt catacacgtg
     1381 acgtaattta tctttaccgt ctgtgacaat cttcgccagt atcttagata cttgttgtgg
     1441 tgtatagaac tcgcctgctt ttttacc
//
LOCUS       DAMQWL010000246         1460 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.254, whole genome shotgun sequence.
ACCESSION   DAMQWL010000246 DAMQWL010000000
VERSION     DAMQWL010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.254"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..887
                     /locus_tag="PF788_002807"
     CDS             <1..887
                     /locus_tag="PF788_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305026.1"
                     /translation="NHKLSSKKSEESKQETVKKESEEEKDPDLEKYEEIEKKMKGIKD
                     APSLDKLDPLMTEKSFTNSKGIQGWKDYKELMGKVELADYRFTKDSKGSSIKDVDAFF
                     KGKKGIKRKVIETHDDVKQVDYWYVDPDGKKIGNSNTPVFYAEIMTKYKDGKLVYASV
                     EPGSYVIHKDDAIKYDDYSKLKKLSQLTKLDHPKPVPYSVAQIKSFGVPLTSVSFMTH
                     GSKDTKDEVLPALAYFTFSPKNYEDKSNPDPKVLNLVHMDFLNASSDFGNAHFVVLSK
                     YIKEYESNYETASDDSLK"
     gene            complement(1050..1253)
                     /locus_tag="PF788_002808"
     CDS             complement(1050..1253)
                     /locus_tag="PF788_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HDG6305027.1"
                     /translation="MQVNKVIYILLALFLGSFGIHKFYAGKNMQGILHLIFCWTGIPH
                     ILAIISAVITVFKPADEQGNVTL"
BASE COUNT          572 a          208 c          229 g          451 t
ORIGIN      
        1 ggaatcataa attatcatca aagaaatcag aagaatcaaa acaagaaact gtaaaaaaag
       61 aatcggaaga agagaaagat ccagatttag agaaatatga agaaatagag aagaaaatga
      121 aaggaattaa agatgcgcca tctcttgata agttggatcc attaatgaca gaaaagtcgt
      181 ttacgaatag taaagggatt caaggatgga aagattacaa agaattaatg ggtaaagtgg
      241 aacttgcaga ttatagattt actaaagatt caaaaggatc ttcaataaaa gatgttgatg
      301 cattctttaa aggtaagaaa ggtataaaaa ggaaagtgat tgaaacacac gatgatgtaa
      361 aacaagttga ttattggtat gtagatccag atggaaagaa aattggcaat tcaaacacac
      421 ctgtttttta cgcagaaatt atgacaaaat ataaagatgg aaagttagtt tatgcatcag
      481 tcgaaccagg atcttacgta atacataaag atgatgcaat taaatatgac gattattcta
      541 agttaaaaaa attaagtcag ctaactaaac ttgatcatcc aaaaccagtt ccatatagcg
      601 tagctcaaat caaatctttc ggagtacctt taacaagcgt ttcatttatg acacatggat
      661 caaaggatac taaagatgaa gtgttgccgg cattggccta tttcactttt tcaccaaaaa
      721 attatgaaga caagtctaat ccagatccaa aagttttaaa tttagtacat atggatttct
      781 taaatgcatc tagtgatttt ggtaacgcac attttgttgt tttaagtaaa tatattaaag
      841 agtatgaatc aaactatgaa acagcgtcag atgattcttt aaaatagtat ttactgtgtg
      901 aaaaataaat agtgtactac attaaataat cgcaataata atcccgataa acaatcagca
      961 ttactgctta tcacatagag ttcgtaataa ctataactct atgattcgca aataataaat
     1021 gattgtcatc gggatttatt tttatcaatt tataaagtga cattaccttg ttcatcagca
     1081 ggtttgaaaa cagtaatcac tgcactaata attgctaaaa tgtgtgggat acctgtccaa
     1141 cagaatatta agtgtagaat accttgcata ttcttgccgg cataaaattt atgaatacca
     1201 aaactaccta agaacaatgc taataaaata taaataactt tgtttacttg catttctttc
     1261 cctccagttg aattgcttat aatgacatta gcttctcttt ttattatacc cacttttagt
     1321 tcaaacattc tagtttaagc attcccaatc atctaaattt cagttattca atccttacaa
     1381 taaatttagg attacatttc agttgcattg tattatttta cgtgtgaaat atacgtaatg
     1441 aatcacatga caatcttcaa
//
LOCUS       DAMQWL010000247         1454 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.255, whole genome shotgun sequence.
ACCESSION   DAMQWL010000247 DAMQWL010000000
VERSION     DAMQWL010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1454
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.255"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(204..557)
                     /locus_tag="PF788_002809"
     CDS             complement(204..557)
                     /locus_tag="PF788_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDG6305028.1"
                     /translation="MISIILVMIGGGFGAIARSAITDYFNHKFTSKLPIATLIVNLVG
                     SFLIGLTIGLSISISWFPAFFVTGFLGGLTTFSTLAKELTLMMTPKFNINLFLNYSLL
                     QFIIGFIACYIGYHI"
     gene            complement(554..919)
                     /gene="crcB"
                     /locus_tag="PF788_002810"
     CDS             complement(554..919)
                     /gene="crcB"
                     /locus_tag="PF788_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HDG6305029.1"
                     /translation="MQYVYIFIGGALGALLRYLISFLNTDGGFPIGTLIANLTGAFVM
                     GLLTALTIAFFSNHPTLKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYAVTS
                     YVFGILLCYVGIKLGGDLS"
     gene            complement(1175..>1454)
                     /locus_tag="PF788_002811"
     CDS             complement(1175..>1454)
                     /locus_tag="PF788_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305030.1"
                     /translation="YLSSLMIILSFFFNTNNVFLSGLFNSFIKLILFCSVINSIVLIL
                     SIIFADRSIKSLKPDADWIRIASKSLPWIILIVILVHIFSIVRTFGFI"
BASE COUNT          561 a          207 c          230 g          456 t
ORIGIN      
        1 ttttttaggg atttatgtcc cactcccttt attttcgact agtttggaga atttattgac
       61 attcacatta tttaaacggc aacaaagatt attgaaattt ggtaggcatt atatggtgct
      121 taaaaatttg catgaaaatt aaaaaatgct tcgttcagga aggtgtcgta atttacctat
      181 ttgctgaatg aagcatttta tttttaaata tgatagccaa tataacaagc tataaatcca
      241 atgatgaatt gtaaaagtga ataattgaga aaaaggttaa tattaaattt tggcgtcatc
      301 attagtgtaa gttctttggc taacgttgag aaagttgtta agccacctaa aaaaccggta
      361 acaaagaacg cagggaacca tgagattgaa attgataagc ctatagttaa tccaattaaa
      421 aaactaccaa ctagatttac tatcaatgtt gcgataggta actttgaagt aaatttatga
      481 ttaaaataat cagtaatggc acttctagca attgcgccaa aaccgccgcc aatcatgact
      541 aaaatgattg atatcatgat aaatcaccac ctagttttat accgacgtaa cataacaaaa
      601 taccaaagac ataacttgtt acagcatata gtagtaaagt tataaattgt tgatgatcaa
      661 acatatgtat taattctaat tgaaatgttg aaaaagtcgt taaagcacca agaaaaccag
      721 tcgtaatagc tttttttagg gtcggatggt ttgaaaaaaa tgcaattgtt aaggctgtta
      781 gcaatcccat tacaaaggca ccagtcaaat tggctatcag tgttccgatt ggaaaacctc
      841 cgtcagtatt cagaaaagaa atgaggtaac gtaataaagc gcctaaagca ccaccgataa
      901 aaatatatac atattgcatt tggttcacct cgaaaagaag tagtttgaat ttaaaaaaga
      961 ggttttggca acgcgacgac aaaaattgtc gatgcattat caaacctcat tatatgttat
     1021 atcttgttgt ataactatag cgattagatg catagttatg atttcgaaaa tctaatattt
     1081 tttatacgca acaacgttat caaattgttt tactcattat agcatgatac attgtattgt
     1141 tttgtattaa ggctacaatg acatattaac ttttttaaat aaaaccgaat gtacgaacaa
     1201 ttgaaaagat atgtactaaa ataacaatta gaataatcca aggcaaactt ttactcgcaa
     1261 ttctaatcca atctgcatca ggctttagtg atttaattga acgatctgca aaaattatag
     1321 acaaaattag tacaattgag ttaataacac tgcagaaaag tattaattta ataaaagaat
     1381 taaaaagtcc acttaggaaa acgttatttg tattaaagaa aaagcttaaa ataatcatta
     1441 agctagataa gtaa
//
LOCUS       DAMQWL010000248         1448 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.256, whole genome shotgun sequence.
ACCESSION   DAMQWL010000248 DAMQWL010000000
VERSION     DAMQWL010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.256"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            83..1069
                     /locus_tag="PF788_002812"
     CDS             83..1069
                     /locus_tag="PF788_002812"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HDG6305031.1"
                     /translation="MKFISNNNITDPTLNLAMEEYVLKNLPAEESYFLFYINRPSIIV
                     GKNQNTIEEVNQTYIDAHNIDVVRRISGGGAVYHDTGNLNFSFITDDDGNSFHNFQKF
                     TEPIVQALQSLGVNAELTGRNDIQVGQAKISGNAMVKVKNRMFSHGTLMLNSDLDEVQ
                     NALKVNPAKIKSKGIKSVRKRVANIQEFLNDPLEIEEFKKIILKTIFGETEVEEYKLT
                     DEDWENIEKLSNDKYRTWEWNYGRNPKYNFEREEKFEKGFVQIKFDVKRGKIEHAKIF
                     GDFFGVGDVTDLENALVGCLHDFEHIEEALSEYDLYHYFGDIDRHELIRLMS"
     gene            complement(1150..1368)
                     /locus_tag="PF788_002813"
     CDS             complement(1150..1368)
                     /locus_tag="PF788_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IDEAL domain-containing protein"
                     /protein_id="HDG6305032.1"
                     /translation="MKYNTNVKHTTLEAFVTTVNDLGIELIINEALREVRKRQLIELI
                     DDALVNKDEAAFNQYTAEYKNLEAFLGE"
BASE COUNT          535 a          183 c          256 g          474 t
ORIGIN      
        1 tgtgagtata taattggcat tttgagcaaa gttaaggcat aaataagtag agaatatata
       61 tagatataag ggagagattg taatgaaatt cattagtaat aataatatta cagatccaac
      121 tttaaactta gcaatggaag aatatgtttt aaaaaattta ccagcagaag aaagttactt
      181 tttattttac ataaatagac catctatcat tgttggaaag aatcaaaata cgatagagga
      241 agtaaatcag acatatatcg atgctcacaa catcgatgta gtaagaagaa tttctggtgg
      301 tggcgctgtt tatcatgata ctggcaattt aaactttagt tttataacag atgatgatgg
      361 taacagtttc cacaatttcc aaaaattcac tgaaccaatt gttcaagcat tacaatcttt
      421 aggcgtaaat gctgaattaa ctggtcgtaa cgatattcaa gttggacaag cgaaaatctc
      481 agggaatgct atggttaaag ttaaaaatag aatgtttagt catggtacgt tgatgttaaa
      541 tagtgattta gacgaagttc agaatgcact aaaagttaat ccagctaaga ttaaatcaaa
      601 aggtattaaa tctgttcgta aacgggtagc aaacattcaa gaatttttaa atgacccttt
      661 agaaattgaa gaatttaaaa aaatcatctt gaaaactatc tttggagaaa ctgaagtaga
      721 agaatataaa ttaacggatg aagattggga aaatattgaa aagttaagta acgacaaata
      781 tagaacttgg gaatggaatt atggtagaaa ccctaaatat aactttgaac gcgaggaaaa
      841 atttgaaaaa ggatttgtac aaattaagtt tgatgttaaa cgaggtaaaa tcgaacatgc
      901 aaaaatattc ggtgatttct ttggtgtcgg agatgtcact gatcttgaaa atgcattagt
      961 tggctgtcta cacgactttg agcacataga agaagcacta tcagaatatg atttatatca
     1021 ttatttcggt gacatagata gacatgaatt aattagatta atgtcataaa cgattaaagg
     1081 actattctta catgtatgag atgttaagaa tagtcctttt atgattgcgt tatggaattc
     1141 gaatcaatgt tattcaccga gaaatgcctc caaatttttg tattctgccg tatattgatt
     1201 aaatgctgct tcatctttat tgacgagtgc gtcatctata agttctatga gctgtcgttt
     1261 tcttacctct cgaagtgctt cattgataat taattcaata cccaaatcat tgacagttgt
     1321 gacaaacgct tctaaagttg tatgtttaac attagtattg tatttcatag aaaccactac
     1381 ctttctttaa tttataataa gtatacattt ttctaatttt gaaatcaatg aatattctga
     1441 ctattagt
//
LOCUS       DAMQWL010000249         1445 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.257, whole genome shotgun sequence.
ACCESSION   DAMQWL010000249 DAMQWL010000000
VERSION     DAMQWL010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1445
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.257"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..768
                     /gene="pmtC"
                     /locus_tag="PF788_002814"
     CDS             <1..768
                     /gene="pmtC"
                     /locus_tag="PF788_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenol-soluble modulin export ABC transporter
                     ATP-binding protein PmtC"
                     /protein_id="HDG6305033.1"
                     /translation="GVGKTTVMKVMNGNIIKFDGKVDIDNADNIGFLIEHPKLYDNKS
                     GLYNLKLFAQVLGKGFDKAYTDKIIDAFGMRPYIKKKVKKYSMGMKQKLAIAVSLMNK
                     PKFLILDEPTNGMDPDGSIDVLTTIKSLVNELDMRILISSHKLEDIELICDRAVFLRD
                     GHFVQDVNMEEGVASDTTIVTVDHKDFDRTEKYLAEHFQLQNVDKADGHLMINAQKNY
                     QVILKALSELDIYPKYIETRKSSLRDTYFNINQRGDK"
     gene            768..>1445
                     /gene="pmtD"
                     /locus_tag="PF788_002815"
     CDS             768..>1445
                     /gene="pmtD"
                     /locus_tag="PF788_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenol-soluble modulin export ABC transporter
                     permease subunit PmtD"
                     /protein_id="HDG6305034.1"
                     /translation="MRILNLVKYDFYSIFKSPLTYLAILVVSSLIATQSILMANSMDN
                     PKHIIVYGSVFAAAKWLLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTI
                     SIILISILFALIHYVILIVVQASSNGKNLAFSKYVDNLWFFLIFLLFFGLFLFLITLA
                     SQKTAMIFSLGVFLVLIVPFIKPFITFIPRYGEKVLDAFDYIPFAYLTDKMISSNFDF
                     SNWQWVIS"
BASE COUNT          514 a          170 c          240 g          521 t
ORIGIN      
        1 ggtgttggta aaacaaccgt tatgaaagta atgaatggta atattattaa atttgatgga
       61 aaagtagata ttgataatgc agataatatc ggttttttaa ttgagcatcc taaattatat
      121 gataataaat caggattgta taacttgaaa ttatttgcac aagtattagg taagggtttt
      181 gataaagcat acacagacaa aattatagat gcatttggta tgagacctta tattaaaaag
      241 aaagttaaga aatattcaat ggggatgaag caaaagttag caattgcagt atctttaatg
      301 aataaaccta aatttttaat cttggatgag cctacaaatg gtatggatcc agatggctca
      361 attgatgtgc tgactacaat taagtcttta gtaaatgaac ttgatatgag aattctaata
      421 tcaagtcata agttagaaga tattgaatta atttgtgata gagctgtatt tttaagagac
      481 ggacattttg ttcaagatgt aaacatggag gaaggtgttg catctgacac aacgatagtt
      541 actgttgatc ataaagactt tgatagaact gaaaaatatc ttgcagagca tttccaatta
      601 caaaatgtcg acaaagcaga cggacattta atgatcaatg cacaaaaaaa ttatcaagtt
      661 atactaaaag cattatctga attagatatt tatccgaaat atattgaaac acgtaaaagt
      721 tcattgcgtg atacgtactt caatataaat caaagaggtg ataaataatg agaattttaa
      781 atttagttaa gtatgatttt tatagtatat ttaaaagtcc tttaacatat ttagcgatac
      841 tagtcgtatc tagtttgatt gcaactcaaa gtatacttat ggcaaattcg atggataacc
      901 cgaaacatat tattgtctat ggatctgtat ttgctgcagc aaaatggtta ttgttaataa
      961 ttggattaat gtttgttgtt aagacaatta cgcgtgattt ttcacaaggt acaattcaac
     1021 tatatatgag taaagttaaa acacgcgttg gatacattat ttcgaaaaca atttcaatta
     1081 ttttaatttc aatattattt gcattaattc attatgtgat tttgattgtt gtgcaggcat
     1141 ctagtaatgg aaaaaatttg gcgttttcta aatatgtaga taatttatgg ttcttcctaa
     1201 tctttttact attctttggc ttgtttttat tcttaatcac acttgcatca caaaaaacag
     1261 caatgatatt ttcattaggt gtatttttag tactcattgt accgtttatt aaacctttta
     1321 ttacatttat cccaagatac ggtgaaaaag ttttagatgc ttttgattat atcccttttg
     1381 cttacttaac tgataaaatg attagctcta actttgattt tagcaattgg caatgggtaa
     1441 tttca
//
LOCUS       DAMQWL010000250         1441 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.258, whole genome shotgun sequence.
ACCESSION   DAMQWL010000250 DAMQWL010000000
VERSION     DAMQWL010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1441
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.258"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            372..1433
                     /locus_tag="PF788_002816"
     CDS             372..1433
                     /locus_tag="PF788_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIC"
                     /protein_id="HDG6305035.1"
                     /translation="MSNANNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSG
                     NEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSF
                     MLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRK
                     ITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLG
                     IVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAY
                     VLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELC
                     KKFIPIYSNDIYKFEVPKQ"
BASE COUNT          450 a          171 c          243 g          577 t
ORIGIN      
        1 tttaacttct ttttttggta ttacattaat gataatgatt atattatctg gggttatata
       61 tttgtttcaa cttttctaat aatatatttg taaaagtgct attttattgt gctttatacc
      121 aagtcgattc aatttatcta tcttaatagt aatatggcta ttttaatatt tacaatttat
      181 tacattatta gtcacaggat gtaattagta gtattttaaa attaacatga cattgattag
      241 tgagtagatt gtttaaattt gctttattca atttgtggat tgttatattt agattaaatt
      301 agccaactaa tcattgttaa agttaatttt ctataatatg atgagtttaa tgttcaaatt
      361 ggaggtcgtt tatgagtaac gcaaataatg ctgataataa acagtttttc agtaagattt
      421 taaattctat tggtgctggt gttgttattg cacttgttcc gaatgcttta ttaggtgaag
      481 tattaaaaat atttaaaagt ggtaatgaaa ttttagaatt aacgtatcag ttagtgatac
      541 taattcaatc atttatggca tttattattg gggttttagc tgctcatcaa tttaaattta
      601 atggtgcagg tgctgctata gtaggtacat cagctatgat tggttcaggt gctgttgtat
      661 atagcaataa tagttttatg ttaaaaggta taggtgacat tataaatacg agtttggttg
      721 ttattattgc atgtcttata tatatggtat tacaaaacaa acttggatct tttgaattaa
      781 ttatattacc agttttagta cctatcgtta gtgggggtat cggtctaatc acattacctt
      841 acattcgaaa aattactcaa gcaattggaa atgtaattca ttcttttaca gacttaaatc
      901 cgttgttaat gtctatactt attagtgtgg cattttcatt attaatggta acaccaatat
      961 cgttagtagc gattgcaact gcgattagtt taaacggact aggaagtgga gcagcaaacc
     1021 taggtatagt ggctgcctgt gttactttct tatttggctc attgcgtgtc aattctattg
     1081 gtgtaaatgc agttttactc ataggagctg caaaaatgat gatcccagtt tacttgaaaa
     1141 atttaattat ttcgatacca ttgactataa atggaataat tactggaatc attgcttacg
     1201 ttcttcaggt taaaggaaca ccattgtctg ctggatttgg atatacagga ttagttggcc
     1261 caataaatgc atttaaccga atgtcaggtg atccaacaat gaatattatt ttattagcac
     1321 ttggttattt tgtcatacca tttgtatcgg catttattgt tcatgaattg tgtaaaaaat
     1381 tcattcctat atattctaat gatatttata aatttgaagt tccaaaacaa taatttatag
     1441 c
//
LOCUS       DAMQWL010000251         1410 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.259, whole genome shotgun sequence.
ACCESSION   DAMQWL010000251 DAMQWL010000000
VERSION     DAMQWL010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.259"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(116..199)
                     /locus_tag="PF788_002817"
     tRNA            complement(116..199)
                     /locus_tag="PF788_002817"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(163..165),aa:Leu,seq:caa)
     gene            complement(238..312)
                     /locus_tag="PF788_002818"
     tRNA            complement(238..312)
                     /locus_tag="PF788_002818"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(277..279),aa:Gly,seq:tcc)
     gene            complement(416..490)
                     /locus_tag="PF788_002819"
     tRNA            complement(416..490)
                     /locus_tag="PF788_002819"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(455..457),aa:Gly,seq:tcc)
     gene            complement(498..571)
                     /locus_tag="PF788_002820"
     tRNA            complement(498..571)
                     /locus_tag="PF788_002820"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(537..539),aa:Cys,seq:gca)
     gene            complement(577..648)
                     /locus_tag="PF788_002821"
     tRNA            complement(577..648)
                     /locus_tag="PF788_002821"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(614..616),aa:Gln,seq:ttg)
     gene            complement(660..732)
                     /locus_tag="PF788_002822"
     tRNA            complement(660..732)
                     /locus_tag="PF788_002822"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(697..699),aa:His,seq:gtg)
     gene            complement(735..808)
                     /locus_tag="PF788_002823"
     tRNA            complement(735..808)
                     /locus_tag="PF788_002823"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(774..776),aa:Trp,seq:cca)
     gene            complement(824..904)
                     /locus_tag="PF788_002824"
     tRNA            complement(824..904)
                     /locus_tag="PF788_002824"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(868..870),aa:Tyr,seq:gta)
     gene            complement(910..985)
                     /locus_tag="PF788_002825"
     tRNA            complement(910..985)
                     /locus_tag="PF788_002825"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(950..952),aa:Thr,seq:tgt)
     gene            complement(993..1065)
                     /locus_tag="PF788_002826"
     tRNA            complement(993..1065)
                     /locus_tag="PF788_002826"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1030..1032),aa:Phe,seq:gaa)
     gene            complement(1084..1159)
                     /locus_tag="PF788_002827"
     tRNA            complement(1084..1159)
                     /locus_tag="PF788_002827"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1124..1126),aa:Asp,seq:gtc)
     gene            complement(1169..1242)
                     /locus_tag="PF788_002828"
     tRNA            complement(1169..1242)
                     /locus_tag="PF788_002828"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1206..1208),aa:Met,seq:cat)
     gene            complement(1257..1349)
                     /locus_tag="PF788_002829"
     tRNA            complement(1257..1349)
                     /locus_tag="PF788_002829"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1311..1313),aa:Ser,seq:tga)
BASE COUNT          410 a          338 c          327 g          335 t
ORIGIN      
        1 gtattttaaa aatagttctt taaattatat acccaccaca tttggtggag aaccaaaaga
       61 aaccttgttt tacaaggttt ctaatacgtt atgttatgta aataacagtt aattataccg
      121 gtggtcgggg tcgaaccgac actccacaag tggaacggga ttttgagtcc cgcgcgtctg
      181 ccaattccgc cacaccggct taatggtaaa caaaaaactt ccctttggaa gcaattatgg
      241 agcggaagat aggatttaca cctatacctc gttccgggaa ggaacgtgtt ctaaaagttg
      301 aactactccc gcaaatatta aattatggag cggaagatag gatttacacc tatacctcat
      361 tccaggaagg aatgtattct aagagttgaa atactcccgc attattatta aattatggag
      421 cggaagatag gatttgcacc tatacctcgt tccgggaagg aacgtgttct aaaagttgaa
      481 ctactcccgc ataaacctgg aggcggcaac cggatttgaa ccggtgataa aggttttgca
      541 gacctctgcc ttaccacttg gctatgccgc caataactgg gctagctgga ttcgaaccaa
      601 cgagtgacgg agtcaaagtc cgttgcctta ccgcttggct atagcccatt aataataagg
      661 gcggctgaag gggatcgaac cctcgaatgt cggaaccaca atccgatgtg ttaaccactt
      721 caccacagcc gccatggcag gggcagtagg aatcgaaccc acaccaaagg ttttggagac
      781 ctctattcta ccgttgaact atgcccctat taaaaataat aaatggaggg gggcagattc
      841 gaactgccga acccgaagga gcggatttac agtccgccgc gtttagccac ttcgctaccc
      901 ctccataaat ggtgccggcc agaggacttg aacccccaac ctactgatta caagtcagtt
      961 gctctaccaa ttgagctagg ccggctaaga aatggttcag gacagagtcg aactgccgac
     1021 acatggagct tcaatccatt gctctaccaa ctgagctact gaaccataat aaaaatgtaa
     1081 tgatggcggt ctcgacggga atcgaacccg cgatctcctg cgtgacaggc aggcgtgtta
     1141 accgctacac tacgagacct ataaaatatt gcgggaggcg gatttgaacc accgaccttc
     1201 gggttatgag cccgacgagc taccgaactg ctccatcccg cgataataaa aaataatggc
     1261 ggaggaagag ggattcgaac ccccgcggcc cgttaaggcc ctgtcggttt tcaagaccga
     1321 tcccttcagc cggacttggg tattcctcca ttattatagg taaatcgcta ttaattataa
     1381 aattaaatgg cggtctcgac gggaatcgaa
//
LOCUS       DAMQWL010000252         1388 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.260, whole genome shotgun sequence.
ACCESSION   DAMQWL010000252 DAMQWL010000000
VERSION     DAMQWL010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1388
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.260"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            304..705
                     /locus_tag="PF788_002830"
     CDS             304..705
                     /locus_tag="PF788_002830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl peptide receptor-like 1 inhibitory
                     protein"
                     /protein_id="HDG6305036.1"
                     /translation="MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLA
                     DQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRD
                     YYTFDLTRPLEENRKNIKVVKNGEIDSITWY"
     gene            665..757
                     /locus_tag="PF788_002831"
     CDS             665..757
                     /locus_tag="PF788_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305037.1"
                     /translation="MLKTVKSTRLLGIKKHTELNSCTPNVRKQC"
     gene            complement(1074..1388)
                     /gene="ecb"
                     /locus_tag="PF788_002832"
     CDS             complement(1074..1388)
                     /gene="ecb"
                     /locus_tag="PF788_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complement convertase inhibitor Ecb"
                     /protein_id="HDG6305038.1"
                     /translation="MGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKK
                     QVNKKVVDAQKAVNFFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNT
                     LK"
BASE COUNT          493 a          209 c          192 g          494 t
ORIGIN      
        1 tctatccaac ttagcaaaca aaatgtagag aaatgtaaat atcgttttag caataaaaat
       61 tattcaatca tagttgagtg acgtttacta ctattattat actatcaaca aattcaataa
      121 tacctcaaat aaaaataata ccatcaaatt catcattatt ctttttcgat tgcattaaac
      181 cttattaatt tgcacttaat tttaattaat gaagtgttaa ctggtaaatg tatgaaaccg
      241 tttgtaaaat agcagtgtac tcgcattagt aagtacaaat ttattttaca gggagaactt
      301 attatgaaaa aaaatatcac aaaaactatt atcgcatcta cagtaatcgc tgcaggtctt
      361 ttaactcaaa ctaatgatgc taaagctttc tttagttatg aatggaaagg tttagaaatc
      421 gcaaaaaatt tagcagatca agctaaaaag gacgatgaac gtattgataa gttaatgaaa
      481 gagtctgata aaaatctaac tccttacaaa gctgaaactg ttaatgatct gtaccttatt
      541 gttaaaaaat taagccaagg tgatgtgaag aaagcagttg tcagaattaa agatggtggt
      601 cctagagatt actatacttt tgacttaact cgtcctttag aagagaacag aaaaaatatt
      661 aaagttgtta aaaacggtga aatcgactcg attacttggt attaaaaaac atactgaatt
      721 aaatagttgt acgccaaacg ttagaaaaca atgctaacgt attggcgtgc ttttttattt
      781 taagtaactt ccaatttatt tagcatcttt acgactgttt aataaagcac gtatgattaa
      841 cacggttgcc actatatccg ttacaatttt tatgattgtt aatacattcg atttcctttt
      901 cacaatagcc acctcgcttg ttcaaaacat aaacaactat tgcattcact tttaagtaat
      961 tatttatatt atttatccca ataagctcac cattcaaata aacacaatat tataaaataa
     1021 ttataccttt ggatatagca aaaagccaca ctctatagca tggcttctat caattatttt
     1081 aaagtattat attttaaaac tagatcgatt tgtctttgta attttttctt ttcataactg
     1141 tgttggaaat gaattaaatt aacagctctt tgtgctttac ggtgtgttgc aacagttctt
     1201 gtacgtttga aaaagtttac agctttttgt gcatccacaa cttttttatt tacttgtttt
     1261 ttaaagtttg tttgatactg atcatatttt ttagcagctt caacgttttt agtttgtgca
     1321 tgagattcac cggcaaacgt tgataccgtt aaactaatag cagctatgct taaaattgat
     1381 ttcccaat
//
LOCUS       DAMQWL010000253         1368 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.261, whole genome shotgun sequence.
ACCESSION   DAMQWL010000253 DAMQWL010000000
VERSION     DAMQWL010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.261"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            99..1337
                     /locus_tag="PF788_002833"
     CDS             99..1337
                     /locus_tag="PF788_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDG6305039.1"
                     /translation="MKDISKIVADVESTLAPYFKEIEETAYINQEKVLNAFHHVKATE
                     SDLQGSTGYGYDDFGRDHLEEIYAQAFKAEDAIVRPQIISGTHAITIALQSLLKHGDE
                     LIYITGSPYDTLLEVIGVNGNGIESLMEHGVSYKDIALKEGKIDIESVLDGVSERTKV
                     IAIQRSKGYDQRPSIPLDEIEKVITRLKNVHPNILIFVDNCYGEFVERREPIECGADL
                     IAGSLIKNPGGGLAKIGGYIAGRKDLIERCGYRLTAPGIGKEAGASLNALLEMYQGFF
                     LAPHVVSQSLKGALFTSLFLEKMNMNTTPKYYEKRTDLIQTVKFETKEQMISFCQSIQ
                     HASPINAHFSPEPSYMPGYEDDVIMAAGTFIQGSSIELSADGPIRPPYEAYVQGGLTY
                     EHVKIAVTRAVNQLKEQGLI"
BASE COUNT          497 a          187 c          276 g          408 t
ORIGIN      
        1 taaaacaaca tacattagtg actgaactta aatatgatga aattgaaaat gtttatcgta
       61 taaaaggatt taaaaaataa taaaaggacg aaattcaaat gaaagatata agtaagatag
      121 tagctgacgt cgaatcaacg ttagcaccat attttaaaga aattgaagaa acagcatata
      181 ttaatcaaga aaaagtatta aatgcatttc atcatgtcaa agcaaccgaa agtgatctac
      241 aaggatcaac aggatacggg tatgatgact ttggacgtga tcatttagaa gaaatatatg
      301 cgcaggcatt taaagcagaa gatgcaattg ttcgtccgca aattatttca ggtacgcatg
      361 cgattactat tgcattacaa agtttattaa aacatggtga tgaattaatt tatataacgg
      421 gtagtccata tgacacttta cttgaagtca ttggcgtaaa cggaaatggt attgaaagtt
      481 taatggagca tggcgtatcg tataaagata ttgcacttaa agaaggtaag atcgatattg
      541 aaagtgtgtt agatggggtt tctgagcgca ccaaagtaat agcgattcaa cgttcgaaag
      601 gctatgatca aagaccttca attccgctag atgaaattga aaaggtaatt actaggttga
      661 aaaacgtgca tcctaatatt ttaatatttg tggataactg ttatggggaa tttgttgaaa
      721 gacgtgaacc tatagaatgt ggtgccgatt taatagcagg atcattaatt aaaaaccctg
      781 gcggtggttt agctaagatt ggtggataca ttgctggtag aaaagattta attgaacgat
      841 gtggttatag attgacagca cctggtattg gtaaagaagc gggtgcatca ttaaatgcat
      901 tgcttgaaat gtatcaaggt ttctttttag caccacacgt tgtcagtcag agtcttaaag
      961 gtgcattgtt tactagttta tttttagaaa aaatgaatat gaacacaacg ccgaagtact
     1021 acgaaaaacg aactgattta attcaaacag ttaaatttga aacgaaagaa caaatgattt
     1081 cattttgtca aagtattcaa cacgcatccc caattaatgc acattttagt ccagaaccta
     1141 gttatatgcc tggttacgaa gatgatgtta ttatggcagc tggtacgttt attcaaggtt
     1201 catcgattga attatctgca gatggaccta ttcgtcctcc ttatgaagca tatgttcaag
     1261 gaggattaac atatgaacac gttaaaattg ctgtgacaag agctgttaat cagttgaaag
     1321 aacaaggact tatataatag attaaatttc accctaaatg ataatgtg
//
LOCUS       DAMQWL010000254         1355 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.262, whole genome shotgun sequence.
ACCESSION   DAMQWL010000254 DAMQWL010000000
VERSION     DAMQWL010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.262"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..1318
                     /locus_tag="PF788_002834"
     rRNA            <1..1318
                     /locus_tag="PF788_002834"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          358 a          302 c          399 g          296 t
ORIGIN      
        1 cactgccgag aaaagcctct agatagaaaa taggtgcccg taccgcaaac cgacacaggt
       61 agtcaagatg agaattctaa ggtgagcgag cgaactctcg ttaaggaact cggcaaaatg
      121 accccgtaac ttcgggagaa ggggtgctct ttagggttaa cgcccagaag agccgcagtg
      181 aataggccca agcgactgtt tatcaaaaac acaggtctct gctaaaccgt aaggtgatgt
      241 ataggggctg acgcctgccc ggtgctggaa ggttaagagg agtggttagc ttctgcgaag
      301 ctacgaatcg aagccccagt aaacggcggc cgtaactata acggtcctaa ggtagcgaaa
      361 ttccttgtcg ggtaagttcc gacccgcacg aaaggcgtaa cgatttgggc actgtctcaa
      421 cgagagactc ggtgaaatca tagtacctgt gaagatgcag gttacccgcg acaggacgga
      481 aagaccccgt ggagctttac tgtagcctga tattgaaatt cggcacagct tgtacaggat
      541 aggtaggagc ctttgaaacg tgagcgctag cttacgtgga ggcgctggtg ggatactacc
      601 ctagctgtgt tggctttcta acccgcacca cttatcgtgg tgggagacag tgtcaggcgg
      661 gcagtttgac tggggcggtc gcctcctaaa aggtaacgga ggcgctcaaa ggttccctca
      721 gaatggttgg aaatcattca tagagtgtaa aggcataagg gagcttgact gcgagaccta
      781 caagtcgagc agggtcgaaa gacggactta gtgatccggt ggttccgcat ggaagggcca
      841 tcgctcaacg gataaaagct accccgggga taacaggctt atctccccca agagttcaca
      901 tcgacgggga ggtttggcac ctcgatgtcg gctcatcgca tcctggggct gtagtcggtc
      961 ccaagggttg ggctgttcgc ccattaaagc ggtacgcgag ctgggttcag aacgtcgtga
     1021 gacagttcgg tccctatccg tcgtgggcgt aggaaatttg agaggagctg tccttagtac
     1081 gagaggaccg ggatggacat acctctggtg taccagttgt cgtgccaacg gcatagctgg
     1141 gtagctatgt gtggacggga taagtgctga aagcatctaa gcatgaagcc cccctcaaga
     1201 tgagatttcc caacttcggt tataagatcc ctcaaagatg atgaggttaa taggttcgag
     1261 gtggaagcat ggtgacatgt ggagctgacg aatactaatc gatcgaagac ttaatcaaaa
     1321 taaatgtttt gcgaagcaaa atcactttta cttac
//
LOCUS       DAMQWL010000255         1352 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.263, whole genome shotgun sequence.
ACCESSION   DAMQWL010000255 DAMQWL010000000
VERSION     DAMQWL010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1352
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.263"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(212..1339)
                     /locus_tag="PF788_002835"
     CDS             complement(212..1339)
                     /locus_tag="PF788_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002470719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDG6305040.1"
                     /translation="MKTRAAVLHEMGAKKPYKESKPLKIEYLELDNPSEHEVLIKIHA
                     AGLCHSDLSVINGNRPRPLPMALGHEASGEVIKVGKAVTRVSEGDHVVCTFIPSCGKC
                     IPCKEGRPALCENGAISNEKGEMLEGGMRLSNDEGKVYHHLGISGFAEYSVVSENSIV
                     KIDKKIPFERAAAFGCAIITGIGAVVNTAQIRSGSNVAVVGLGGIGLNAIIGAKLAGA
                     NEIIALDINEDKFELAKQFGATATFNSSDKDIDEQIKEYIPGGVEYAFETAGVVPAMK
                     VAYQITKRGGTTVTTGLPNPKDNFSFPQVTLAAEERTIKGSYVGSCVPDRDIPRFVNL
                     YNQGRLNIDSLISEVITLDEINEGFDRLSNGEVGRIIMKMH"
BASE COUNT          418 a          286 c          186 g          462 t
ORIGIN      
        1 tgaaggatgc tcctatatct ttttttatct aaaaaaacta ttagtaatta gttttaaaac
       61 atttatcttc taatatatag atatgaaatg taaaaataca attagattgg cagtcacaat
      121 gcaaatgtaa tatttgtcag taatcttcct actcaaattg ttattctttt catagaaatc
      181 aagaggagga acgacttgaa ttctattata ttcaatgcat cttcattata attctaccta
      241 cttcaccatt agacaaacga tcaaatccct cattaatttc atctaaagtg ataacctcac
      301 tgatgagtga atcaatattt aaacgtcctt ggttgtatag attaacgaac cttggtatat
      361 ctctgtcagg tacacaactt cctacatatg atcctttaat ggtacgttct tcagccgcta
      421 aagtaacttg agggaaagaa aaattatctt taggattagg cagtcctgtt gttacagttg
      481 tcccccctcg tttagtaatc tgataagcaa ctttcatagc tggcactaca cccgctgttt
      541 caaaagcata ttctactccg ccaggaatat attctttaat ttgctcatcg atatctttat
      601 cgcttgaatt aaatgttgct gtagccccaa attgctttgc taattcaaat ttatcttcgt
      661 taatatctaa agcaataatt tcattggctc ccgctagttt agctccaata atagcattca
      721 atccaatacc tcctaaacca acaaccgcta cattactacc agaacgaatt tgggctgtat
      781 tcaccacagc accgatacct gtgataatag cacaaccaaa tgcagctgca cgttcaaaag
      841 gtattttttt atcaatttta actatagagt tttcagagac aacagaatat tcagcaaaac
      901 ctgatatccc caagtgatga tatacttttc cttcatcatt agataaacgc atccctccct
      961 ctaacatttc gcctttttca ttagatattg ctccgttttc acataatgca ggacgtcctt
     1021 ctttacatgg gatacatttt ccacaactgg gaataaatgt gcataccaca tgatctcctt
     1081 cgctaactct tgtaacagct tttccaactt taattacttc accggaagct tcatgaccaa
     1141 gtgccatagg taaaggtcta ggtctgttac cattaattac tgacaaatca gagtgacata
     1201 atccagctgc atgaatttta attaatactt cgtgttcgct aggattatca agttctaagt
     1261 attcaatttt taaaggttta gattctttat agggcttttt agcccccatt tcatgtaaaa
     1321 ctgctgctct agttttcact tccaacactc ct
//
LOCUS       DAMQWL010000256         1349 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.264, whole genome shotgun sequence.
ACCESSION   DAMQWL010000256 DAMQWL010000000
VERSION     DAMQWL010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1349
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.264"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            427..635
                     /locus_tag="PF788_002836"
                     /pseudo
     CDS             427..635
                     /locus_tag="PF788_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001561168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1209..1297)
                     /locus_tag="PF788_002837"
     tRNA            complement(1209..1297)
                     /locus_tag="PF788_002837"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1260..1262),aa:Ser,seq:gga)
BASE COUNT          525 a          208 c          192 g          424 t
ORIGIN      
        1 aaatgaaacg aatttgaaaa tttcgaaaca gcttaagata acaaattgaa tagccttatt
       61 gataatgcag aatcgtctac acttagttga acaaattcta tgagaataga tattgttaaa
      121 ctatttgggt aggcgatttt attttgacaa gagtcagaag attatttagt tcatagttta
      181 agttacaaat ggctaaactt tatgaaaatg gtatgactag aatcgaaatt atactcgaat
      241 acgatttaac actctcaatc ttctcgaact gaataaatac tgggtcattc aatcatcaag
      301 acaacttaat aagtgatgat aaatgttcat accattttgc aaatataacc agatactctc
      361 aacaaaatgt agagttcaaa attaaaaatg tccctaattg gcacattgct gtatgataat
      421 aaattcaact tagatttcaa caatataact aatgatgctt atatttaccg cgatatcaaa
      481 ccaaacagcc catccacaaa caaattagaa tatatcatgt taataatagt aaatgatata
      541 tcttccaaag accgcaaact gtagcagaac atgagaacct tgcgattttg aaatggtcta
      601 ataaatcaaa tatcattgaa actttaatca cataaattaa cagtagtcac ctgttcgcag
      661 ttctataaat tacaaatgca ataaaggcta aagtaaacta attactttag cctttattaa
      721 taatttagtc gaatttatta aaaatcgact aactcctggt tatgctacgc tttactttat
      781 aatccgcacg tagatgccga ttgattatat tataatatta ttattttatt ttttcaagcg
      841 tatatataat atttgatttt ctttaagtaa cagctaaaca ttacatttca aaacgattag
      901 gtcatgcaga tgtacataca acgcttaaaa catattcaca tttgattaaa gaatttgaag
      961 ataatgaaac taaatttata gaaaaaaatc tgaatgattt gttttgtgac taaacttcaa
     1021 aatcttgtga ctaaaattag gattattcat caaaaattag tcacattgtg gctaaaaaat
     1081 tttaaatgga tataaataaa taagaagtgt aaaaatgagg ataatagctc aaatgcagat
     1141 atatcaaggg attgagtcca aaataaaaat agcgcttaaa atgggtaaaa ccaatttaag
     1201 cgcctttacg gaaggtaagg gattcgaacc cttgagacgc ttgtgacgcc tacacacttt
     1261 ccaggcgtgc tccttcggcc agctcggaca accttcctca acaataaata tgtaataaaa
     1321 aaacagaagc gatatttcac ttctgcttg
//
LOCUS       DAMQWL010000257         1337 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.265, whole genome shotgun sequence.
ACCESSION   DAMQWL010000257 DAMQWL010000000
VERSION     DAMQWL010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.265"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            85..726
                     /locus_tag="PF788_002838"
     CDS             85..726
                     /locus_tag="PF788_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 domain-containing protein"
                     /protein_id="HDG6305041.1"
                     /translation="MEILLCEVRVVNKNPRYRIIKYKNDYLMIDLVSTWLVLFFPFIN
                     WLIPKKYVQISREDFDNLNIVKPVKNKALWPAIGSILLFGTMFRDKIYIPDSHLEKNC
                     VIIICSVLLLSILVFYIYLNQKVKLSIYNDRSSNGKIMIFPSFKNLCFVLFSYFFCGG
                     LSIMFLDVLISLSIQNIIVFIAWVIMTMLFFFINMSSIIDKKIHVIYLRSYKY"
     gene            814..>1337
                     /locus_tag="PF788_002839"
     CDS             814..>1337
                     /locus_tag="PF788_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000882165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 family protein"
                     /protein_id="HDG6305042.1"
                     /translation="MLCETEIINKNPKYRVIKYDDEYLMVDVIRTWLVYFFPFINWFI
                     PKRCAKISREEYEKLNTVKPVKNKNFWPVVGGTILLGATSRKYIHLLNIQLEKRSVIF
                     ICFVVFLCILIFFVLLNRKLKLKVFDNKKEEQKIILVPTLKNAVLILYGYLLIGGMSI
                     LALSMLLTLENQNL"
BASE COUNT          488 a          148 c          211 g          490 t
ORIGIN      
        1 aacaggaaaa tagtatgtta ctaaaataca aaacacttat aaagtatctg aaagtgtatt
       61 agatataaaa ccaacgagac ggaagtggag atattgcttt gcgaggttag agttgtaaac
      121 aaaaatccca gatatagaat tattaaatat aaaaacgact atctgatgat tgatttagta
      181 agcacctggt tagttttgtt ctttccgttt attaattggt taataccaaa aaaatatgtc
      241 caaatcagca gagaagattt tgataattta aatattgtca aaccagttaa aaataaagct
      301 ttatggccag ctataggtag catactttta tttggcacta tgtttagaga taaaatatat
      361 atacctgatt ctcatttaga aaaaaattgc gttattatca tttgttcggt tttattatta
      421 agtattctag tgttttatat atatttaaat cagaaagtaa agttatctat ctataatgat
      481 cggagtagca atggaaaaat tatgattttt ccatcattca agaatctttg ctttgtacta
      541 ttttcttatt ttttctgtgg tggattatca atcatgttct tagatgtttt gattagttta
      601 tctatccaaa atattatagt atttattgct tgggttatta tgacaatgct atttttcttt
      661 ataaatatgt cttcaataat agacaaaaag attcatgtta tatatttaag gtcatataaa
      721 tattaatttt gatacaaaag ggcacaagtg ttttgagaaa cagaaacgat aatatagctg
      781 tgtgaatttg ttattaatag gaagtgataa ttattgcttt gtgaaaccga aattatcaat
      841 aaaaatccga aatacagagt tattaagtat gatgatgagt atttaatggt cgatgtaata
      901 agaacttggc ttgtatactt ttttccattt attaattggt tcattccaaa aaggtgcgcc
      961 aaaattagta gagaagagta tgaaaaactg aacactgtta agccagttaa aaataaaaat
     1021 ttttggcctg ttgtaggagg aacaatccta ctaggtgcta cttccagaaa gtacatacac
     1081 ttacttaata ttcaattaga aaaaagatcg gttatattta tatgcttcgt tgtatttcta
     1141 tgtattttaa tcttttttgt gcttctgaat cgaaaattaa aattgaaagt tttcgataat
     1201 aaaaaagaag aacaaaaaat aattttagta ccaacattaa aaaatgctgt tcttatatta
     1261 tatggctatt tgttgattgg aggcatgtca atattagctt taagcatgtt gctgacatta
     1321 gaaaaccaga atttaat
//
LOCUS       DAMQWL010000258         1325 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.266, whole genome shotgun sequence.
ACCESSION   DAMQWL010000258 DAMQWL010000000
VERSION     DAMQWL010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1325
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.266"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..663
                     /locus_tag="PF788_002840"
     CDS             <1..663
                     /locus_tag="PF788_002840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000503564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exotoxin"
                     /protein_id="HDG6305043.1"
                     /translation="YSDLHHKSKFDSKRLSNAKMSFINPTQLENKNTNDRLLKHDLLF
                     HDMFVNDDWKKDFKVEFENEALSKKFINKDIDIFAGNYGYGCHGGATNKTQCSYGGVT
                     LSDNNKYDDYKNIPCNLWIDGHQTEIELTAVKTKKKIVTIQELEVQLRNYLNEKYKLY
                     EQGGDIVKGYVKYYNDDEQNVEYDFYNLNGEYGREVLKMYADNKTINSDKLHLDIYLF
                     KS"
     gene            complement(865..1134)
                     /locus_tag="PF788_002841"
     CDS             complement(865..1134)
                     /locus_tag="PF788_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305044.1"
                     /translation="MAENNQNSLVTKIATYGSFIAIASFVILFISIFLKFSFNIEFTA
                     TIMNICRYTLILGFILMSLPDVVDKNIKKIIFDAFIIIVFIFFLL"
BASE COUNT          526 a          147 c          214 g          438 t
ORIGIN      
        1 tattcagact tacatcataa aagtaagttt gattcaaagc gtctaagtaa tgctaagatg
       61 tcattcatca atccaactca gcttgaaaat aaaaacacaa acgatagact gttgaagcat
      121 gatttgttat ttcatgacat gttcgtaaat gatgattgga aaaaggattt taaagttgaa
      181 tttgaaaatg aggcactttc aaagaaattt ataaataagg atatcgatat atttgctgga
      241 aattatggat acggatgtca tgggggagca accaataaaa cgcaatgtag ttatggtggt
      301 gttactttaa gtgacaataa taaatacgat gattataaga atataccttg taatttatgg
      361 attgacggac atcaaacaga aatagaacta actgcagtaa aaacgaaaaa gaaaattgtt
      421 actattcaag aattagaggt tcaattaaga aattatttga atgagaagta taagttgtac
      481 gaacaaggtg gcgacattgt taaagggtat gttaaatatt ataatgatga tgaacaaaat
      541 gtagaatatg atttttataa tttaaatggt gagtatggtc gtgaggtatt aaaaatgtat
      601 gctgataata aaactatcaa tagtgacaaa ttgcatttag atatctattt attcaaatca
      661 taatttaatt aagttaatca ttaataatct ttgacagtga aatataaagt acctgtcatt
      721 atgttgttac aaataaaaac agcagtaagg atgctaacac ttagaaaagt cttactgctg
      781 ttttctatta gaattatctt taatgcacaa aggaattcga tacgaaacaa atatgattaa
      841 ctgtgtaatt acaaaataaa actactatag taaaaagaag ataaagacga tgataataaa
      901 tgcatcgaat ataattttct tgatgttttt atcaacaaca tcaggtaagg acataagtat
      961 aaatcctaga attagagtgt agcgacatat gttcataatt gttgctgtaa actcgatatt
     1021 aaatgaaaac tttaaaaata tacttataaa taaaatgaca aacgacgcaa ttgcaataaa
     1081 actgccgtat gtagctatct ttgttacgag actattttga ttattttcag ccattgtaaa
     1141 atcctcttat ttcatcatta ttattttaaa catatcattt tcctgttatt taataaagtt
     1201 tcttgacacg attggttgat gtaattgata tgattagttt ttgaaaaata gacaaattag
     1261 aagcatcgaa ttcactgtta tgagttcaaa aataattatt tatgatacca agttattgaa
     1321 agagc
//
LOCUS       DAMQWL010000259         1305 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.267, whole genome shotgun sequence.
ACCESSION   DAMQWL010000259 DAMQWL010000000
VERSION     DAMQWL010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.267"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..319)
                     /locus_tag="PF788_002842"
     CDS             complement(<1..319)
                     /locus_tag="PF788_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDG6305045.1"
                     /translation="MKPFESHNKQLKILRRRGMEVPSSAKRDLENENYYNIINGYKDL
                     FLELDVNGNFLVPDKYKQGTHFKEVFSLYKLDRKFRNVLLEYLLVFETHIKSRISYYF
                     SEKY"
     gene            complement(596..748)
                     /locus_tag="PF788_002843"
                     /pseudo
     CDS             complement(596..748)
                     /locus_tag="PF788_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500733.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
     gene            complement(748..1239)
                     /locus_tag="PF788_002844"
     CDS             complement(748..1239)
                     /locus_tag="PF788_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000253084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island protein"
                     /protein_id="HDG6305046.1"
                     /translation="MVSDFESNDKITEVELLMHYNPKVINSKIKAMRSQIESLYHLNM
                     NHVITNDNDMLVSVSYPLDKLVLYIIEEKDKLEYYMKTAQDRLNLFKNIIKNYSENEQ
                     QDVMRYMLSSGKVKNEGVIERLKVDIYKVESRKRQERQNQREELHRIEFNKHLEQVKK
                     ELS"
BASE COUNT          426 a          228 c          134 g          517 t
ORIGIN      
        1 tatatttttc gctaaaataa tatgaaattc ttgatttaat atgagtttca aatactaaca
       61 aatactctaa taaaacattc ctaaattttc tatctagttt gtataaagaa aagacttctt
      121 taaaatgagt accttgctta tatttatcag gaaccaaaaa attaccatta acatctagtt
      181 ctaaaaataa atctttataa ccatttatga tattataata attttcattt tctaaatctc
      241 ttttagcact actcggtact tccattcctc ttcttcttag aattttcaat tgtttattat
      301 gactttcaaa tggcttcata aatttacccc tataaaagta gccataaccc gaatagagtt
      361 atggctagat cgttatatat ataatacatt taattttatc ggttgtaaat aaataagaaa
      421 taacaaaaag agatatttta cacaattacc tcctttattt tattgctact cctcaaaccc
      481 accaatatta tcaataaaca ctggtgttgt tacatttaag tctactttct cagtaaataa
      541 gctatggtat caaactaatt agtattaatt tataaatagc atagcttcat tttcttcaat
      601 cctctaacgg tatatcatcc acaatcacag tatgattatg gttagcgtta gatacatctt
      661 gcactgcctt atctaattcc tcatcatctc cgtcccattc accaatatta atgaatatag
      721 gaatattccc gttaatatca tgcttatcta tgaaagttct tttttaactt gttctaaatg
      781 cttattaaac tctattcgat gtaattcttc tcgctggttt tgtcgttctt gacgctttct
      841 actttcaact ttataaatat ctacttttaa acgttcaatg actccttcat ttttaacttt
      901 cccactactt aacatgtacc tcataacatc ctgttgttca ttttcagaat agtttttgat
      961 gatattttta aacaaattta gcctatcctg agctgttttc atgtaatatt caagtttatc
     1021 tttctcttct ataatataaa gtactaattt atctaatgga tatgatacag ataccagcat
     1081 atcgttatca ttcgtgatca catggttcat gttcaagtga tataagcttt ctatttgtga
     1141 tctcatcgct ttaattttgc tattaatgac tttcggattg taatgcatta aaagttctac
     1201 ttcagtgatt ttatcattgc tttcaaagtc agataccaaa taaccacacc tttacatatc
     1261 gaatttaata tttataagta tctgaaaaag ggataaatca agtta
//
LOCUS       DAMQWL010000260         1304 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.268, whole genome shotgun sequence.
ACCESSION   DAMQWL010000260 DAMQWL010000000
VERSION     DAMQWL010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.268"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..148)
                     /locus_tag="PF788_002845"
     CDS             complement(<1..148)
                     /locus_tag="PF788_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF600 family protein"
                     /protein_id="HDG6305047.1"
                     /translation="MTFEEKLSQMYNKIASEISGMIPVEWEQVFTIAYVTDQAGEVIF
                     NYTKP"
     gene            complement(160..660)
                     /locus_tag="PF788_002846"
     CDS             complement(160..660)
                     /locus_tag="PF788_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01741 family protein"
                     /protein_id="HDG6305048.1"
                     /translation="MTFEEKLSEIYNKIANEISGMIPVEWDQVFTIAYVNDRGGEIVF
                     NYTKPGSDELNYYTYIPREYNVSEKVFYDLWTDLYRLFKKLRNAFKEEDLEPWTSCEF
                     DFTRDGKLNVVFDYVDWMNSEFGPIAKENYYMYKKFGVLPETEYEINKVKEIDQYVKE
                     QDEAEL"
     gene            complement(1017..1130)
                     /locus_tag="PF788_002847"
                     /pseudo
     CDS             complement(1017..1130)
                     /locus_tag="PF788_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498864.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5080 family protein"
BASE COUNT          443 a          240 c          120 g          501 t
ORIGIN      
        1 ctggtttagt ataattaaaa atgacttccc cagcttgatc agttacataa gctattgtaa
       61 atacttgctc ccattctact ggtatcattc cactgatctc acttgcaatt ttattgtaca
      121 tttgacttag tttctcttcg aaagtcatgt tatctccccc tatagttcag cttcatcttg
      181 ctctttaaca tattgatcga tttctttaac tttattaatt tcatattccg tttctggtaa
      241 aacaccaaac tttttgtaca tataataatt ttcttttgct attggaccaa attctgaatt
      301 catccaatca acataatcaa atacaacatt caatttacca tctcttgtaa agtcaaattc
      361 acatgatgtc catggttcta aatcttcttc tttaaatgcg tttcttaact tcttaaacaa
      421 tctatataaa tccgtccaca aatcataaaa tactttttca gagacattat actctctagg
      481 gatatatgtg taataattca attcatcgct acctggttta gtataattaa aaacgatctc
      541 tccacctcta tcatttacat aagctatcgt aaatacttgg tcccattcta ctggtatcat
      601 cccactaatc tcattcgcaa tcttgttgta tatttcactt agtttttctt cgaaagtcat
      661 gttatcgccc ctatattttc aaaatagata ttggtttcat ttccgttaaa taaaaagcac
      721 taaacaacac ctctacgtcg cttaatgctt cttcaaatta atattactca ttttaaacct
      781 aaatacacta atggaactaa aataactgca actattgtta cgataactgg aattctaaat
      841 aatttcgagt ctttgcagta ttatattatt tgtaaataat agccctaaaa ctcctactca
      901 ttattttgtc tttctattta tttaactatt tataattata gcaaaaaaga tattaatagt
      961 atatactttt ttgccatttc gtaaataaaa tttaccagca cctatatgta atacaattat
     1021 aataatcttg ataaaattat attcagaata aataaccaac aattgaaaaa taatagattt
     1081 attacaacaa aagcaaacgt tccttttcta attctaataa tcaaatccca ttaatatcaa
     1141 tccactcaaa ttctttcaca tcattgagta taaaataata tggtgatata cgttgaagtt
     1201 gattttctta tttaagtata ctccaacagt attttataaa attatttagt catcatcttc
     1261 agtgtttaat tcaaaaatat agaatctact gtattgcata ataa
//
LOCUS       DAMQWL010000261         1297 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.269, whole genome shotgun sequence.
ACCESSION   DAMQWL010000261 DAMQWL010000000
VERSION     DAMQWL010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1297
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.269"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..1220)
                     /locus_tag="PF788_002848"
     CDS             complement(<1..1220)
                     /locus_tag="PF788_002848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305049.1"
                     /translation="MKTIQLHKTTLILIAILLFYTFMGILLPLMHDDLQWFSNYNTDI
                     LKVGFASLNGRYIGNIFEIIAVHVSWLRWLSYGLISMGIIWMIMHITRCKAWTSYYLL
                     AFSLMLILPSAIYADTYGWFAGFYNYATSTLISLFIIYYCINAIIYKEKQPVSVTVLF
                     YVLCFFGQLFMENVTLFHCIILILAFLYEFTANRTLNYKLLFSFMIATIGTIIMFSNP
                     NYRKILFEGSEYQQVSNNQGIFSKFAEMISTSLPYGVIFSQIIILSMIAALIIYLLLR
                     SDRYVHLTILKRRIIMIGFITLPLYYLLFYNQFLLNKNTDIGLVGFVNVIVCGYFAFS
                     IFVGIYLSINDRKTQITLYSLLIAICVSASTLVIVTPIEPGNFLIVYTIHVIILIILL
                     KEFRKYKSINVNFI"
BASE COUNT          521 a          192 c          171 g          413 t
ORIGIN      
        1 ttaataaaat taacattgat tgacttatat ttccgaaatt cttttaataa aataattaaa
       61 atgattacat gtatcgtata aacaatcaaa aaattacctg gttctattgg agtaacaatg
      121 actagtgtcg acgccgaaac acatattgca ataagtaagg aatataaagt gatttgtgtt
      181 ttacgatcat taatagacaa ataaatacct acaaatatcg aaaacgcaaa gtaaccacat
      241 acaattacgt tcacaaaacc aaccaatcca atatctgtat ttttatttaa taaaaactga
      301 ttgtaaaata gtaaataata aagcggtaaa gtgataaatc ctatcataat gatacgacgc
      361 tttaatattg ttaaatgtac ataccgatca cttctaagca gtagataaat aataagcgct
      421 gcaatcatac ttaaaattat aatctgactg aaaatgacac catatggaag tgacgttgat
      481 atcatttctg caaattttga aaagatacct tgattatttg aaacttgttg atattctgat
      541 ccttcaaata aaattttgcg ataatttgga ttggaaaaca taatgattgt acctatagta
      601 gcaatcataa atgaaaacaa taatttataa ttaagtgttc gatttgcagt aaattcatac
      661 agaaaagcta aaattaaaat gatacagtgg aataatgtca cattctccat aaataattga
      721 ccgaagaagc ataaaacata gaatagtaca gtaacactta ccggctgctt ttctttatat
      781 ataattgcat taatacaata ataaataata aagagtgaaa ttagtgttga tgtcgcataa
      841 ttataaaatc ctgcaaacca gccatatgta tctgcataaa tagcacttgg taaaattaac
      901 attaaagaaa atgctaacaa ataatagctt gtccacgctt tacaacgtgt aatgtgcata
      961 atcatccaaa tgatgcccat actaatgagg ccatatgaaa gccaacgtaa ccagcttaca
     1021 tgtacagcta taatttcaaa gatatttccg atatagcgac cattaagtga tgcaaatcct
     1081 acttttaaaa tatcagtatt ataattgcta aaccattgta aatcatcgtg catgagtggt
     1141 agtaagatac ccataaaagt ataaaacaat aatatcgcaa ttaatatcaa agttgtcttg
     1201 tgtaattgaa ttgttttcac tttgctaatc ctcaaatcta gttaaatttt cctcaacttg
     1261 taggtcgaaa aattaattca atatttttaa tgtattt
//
LOCUS       DAMQWL010000262         1281 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.270, whole genome shotgun sequence.
ACCESSION   DAMQWL010000262 DAMQWL010000000
VERSION     DAMQWL010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1281
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.270"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            58..687
                     /locus_tag="PF788_002849"
     CDS             58..687
                     /locus_tag="PF788_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 domain-containing protein"
                     /protein_id="HDG6305050.1"
                     /translation="MLCESRVINQNPKYRIIKYNNEYFMVDLVSTWIAYFLPMINWFI
                     PKKYAKISREEFESLNIVKPAKNNTFWPVAGFAVLLTTLTRKYIYLLNIHLEKEIVIL
                     TCCMILLGVFALFIYINTKLKLHIFDKNKSNNEKIILIPTFKNICLSLFAYILFGGLS
                     TMALSMLVTSSPQNIIEFLALIGMTACFFLLNMSSVLDKKIHVILKTNK"
     gene            744..860
                     /locus_tag="PF788_002850"
     CDS             744..860
                     /locus_tag="PF788_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305051.1"
                     /translation="MILNRGAILEQGNKTAKVIKSELITNYIMLATLQIKNN"
     gene            883..>1281
                     /locus_tag="PF788_002851"
     CDS             883..>1281
                     /locus_tag="PF788_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000882081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 family protein"
                     /protein_id="HDG6305052.1"
                     /translation="MLCESKIINKNPKYRIIKYNDEYLMIDIISTWISLFFPFINWFI
                     PKRYVKISREEFENLNIVKPAKKNVFWPVAGISTLFAVTLRKYTHLLDTQLDRKLVIA
                     ICCITFIGILTFYVRLIKKSSLNIYNTKNKR"
BASE COUNT          490 a          156 c          183 g          452 t
ORIGIN      
        1 ttgtattggc cgttcttcaa ataaaaaata atttgaataa ggtggaagtg ataaacagtg
       61 ctttgcgaat ctagagtcat taatcaaaac cctaaatata gaattattaa atacaataat
      121 gaatatttca tggttgattt agtaagtact tggattgctt attttttgcc catgattaat
      181 tggtttattc ccaaaaagta cgcgaaaatt agtagagaag aatttgaaag tttaaatatt
      241 gtcaaacccg ctaaaaataa tactttctgg cctgttgcag gatttgcagt gttattaaca
      301 accttaacaa gaaaatatat ctatttgctt aacatccatt tagaaaaaga aatagttata
      361 ttaacatgct gtatgatact tctaggtgtt ttcgcattgt ttatatatat aaatacaaaa
      421 ttgaagttac atatttttga taaaaataaa agtaataacg aaaagatcat attaatacct
      481 acatttaaaa atatttgttt atccttattt gcttatatat tatttggtgg attgtcaaca
      541 atggctctga gtatgttagt aacttcatcc cctcaaaata taatagaatt tcttgcttta
      601 attggcatga ctgcatgctt ctttctactg aatatgtcat cggttctaga taaaaaaatt
      661 catgttattt taaaaacaaa taagtagtaa aattgattaa cttaggtagt atcggatact
      721 taaatgttgg ttcataaaaa gcaatgattt taaatcgagg agctatctta gaacagggaa
      781 ataaaacagc caaagttata aaaagtgaat taataactaa ttatattatg ttagccacgc
      841 ttcaaataaa aaataattag aataaggtgg gattgataat caatgctatg cgaatctaaa
      901 atcatcaata aaaaccccaa atatagaatt attaaatata atgatgagta cttaatgatc
      961 gatataataa gcacttggat tagtttattt tttcctttta ttaattggtt catccccaaa
     1021 agatacgtca aaattagtag agaagagttt gaaaatttaa atattgtgaa acctgctaaa
     1081 aagaatgttt tttggccagt tgcaggtatc tctactttat tcgcagttac attaagaaag
     1141 tatacacatt tacttgacac tcaacttgat agaaaattag ttattgctat atgttgtatc
     1201 acatttatag ggattttaac attttatgta cgcctaatta aaaaatcatc tttaaatatt
     1261 tataatacta aaaataaaag g
//
LOCUS       DAMQWL010000263         1252 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.271, whole genome shotgun sequence.
ACCESSION   DAMQWL010000263 DAMQWL010000000
VERSION     DAMQWL010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.271"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            1..126
                     /locus_tag="PF788_002852"
                     /pseudo
     CDS             1..126
                     /locus_tag="PF788_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282612.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage capsid protein"
     gene            175..523
                     /locus_tag="PF788_002853"
                     /pseudo
     CDS             175..523
                     /locus_tag="PF788_002853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002456552.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            534..728
                     /locus_tag="PF788_002854"
     CDS             534..728
                     /locus_tag="PF788_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305053.1"
                     /translation="MRIEDAYRKDVIITLLNNEEYEGFVTDYENEFESETGNLVVDIQ
                     TDFAVYSFDETEIKSIRLLK"
     gene            769..1119
                     /locus_tag="PF788_002855"
     CDS             769..1119
                     /locus_tag="PF788_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000891995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305054.1"
                     /translation="MLEMISNGKMTMKLNNVKQKRHILCTNEYNNKKNNSSLLPSYTI
                     IDSNESEKMTKKEFIDIPVLFDDEGNFRIKQVIDYKKIIGKSYVNGKYIETKLGKVHY
                     SKTGFHVVPYIKKE"
     gene            1126..>1252
                     /locus_tag="PF788_002856"
     CDS             1126..>1252
                     /locus_tag="PF788_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LSM domain protein"
                     /protein_id="HDG6305055.1"
                     /translation="MNLQSYIGKLVKLTLTNNKILIGKVIDFDDKVDNFDGYNSIE"
BASE COUNT          535 a          116 c          223 g          378 t
ORIGIN      
        1 aaagatatga taccaggtgt gaatgcgcca cctatgcatc cttggtgtag aagtaccaca
       61 gtgccacatg ttggcaattg gcgggacaag ttctttaaag agcgtgaagg taaatatcaa
      121 gtagaagtaa aagaagcata attacaggaa aaagctaaaa accagatgaa agaaatgatt
      181 aaaaatggta aaataaaaat agaaataaat tgcggaaaaa taaaatagat atatgttagg
      241 tcatcaccta tataatgaaa ataaaaaaag agccatttta aataataaga aattgcctag
      301 ctatacaata ctttctatag atttattgaa tgaattgtta agagaaaaaa tgtcaacagg
      361 caatctaata ttaagtgatg agcgatttga tttgaaagag attattaatt ttaatcaaat
      421 tattggaaaa atacatatcg aaaatgtgta tattgaaacc agaaagggaa aagtgcatta
      481 ttcgaagaca ggtgctcata tagtacctta tattgataag taggtgaaaa gtattgagaa
      541 ttgaagatgc atatcgtaaa gatgttatta tcacgctttt gaataatgaa gaatacgaag
      601 ggtttgtaac tgactatgaa aatgaattcg agagcgaaac aggaaatctt gttgtagata
      661 tacagactga ttttgctgtt tattcgtttg atgaaactga gataaaaagt attagattat
      721 taaaataatt acaaaatagc atcctttcta caaaaagcta aaaaagaaat gcttgaaatg
      781 ataagtaatg gtaaaatgac gatgaaattg aataatgtta agcaaaagcg tcatatttta
      841 tgcacaaatg aatataataa taagaaaaat aattcatctt tattaccaag ttatactata
      901 atagattcta atgaaagtga aaagatgact aaaaaagaat ttattgatat tccagttttg
      961 tttgatgatg aagggaattt tagaataaaa caagttatag attataaaaa gataataggt
     1021 aaatcttatg tgaatggtaa atatattgaa acgaaattag gtaaggttca ttattctaaa
     1081 actggttttc atgtagttcc gtatattaaa aaggagtgat taaatatgaa tttacagtca
     1141 tacataggca aattagtcaa attaacgctt actaataata aaatattaat tggaaaagtg
     1201 atagactttg atgataaagt tgataatttt gatggttata attcgataga aa
//
LOCUS       DAMQWL010000264         1227 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.272, whole genome shotgun sequence.
ACCESSION   DAMQWL010000264 DAMQWL010000000
VERSION     DAMQWL010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.272"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..354
                     /locus_tag="PF788_002857"
     CDS             <1..354
                     /locus_tag="PF788_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDG6305056.1"
                     /translation="WRDKFFKEREGKYQVEGCFIESGALNNKSDEYGIKRNRHAQIYY
                     NSVRNRDKQIEISKIAKNTNINKNLIQRVYEHIFENKYLLESGFKQFDPDFYMAQSWQ
                     RLREGKNIKKMDIIM"
     gene            475..723
                     /locus_tag="PF788_002858"
     CDS             475..723
                     /locus_tag="PF788_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305057.1"
                     /translation="MLILKIKEINDKSVTYKYFPNNDENIKPGIIQMDIDSLEVINAE
                     KSSLEKNTRDNYFIHAIDRIYINTSKGLFPESELVAWG"
     gene            758..880
                     /locus_tag="PF788_002859"
     CDS             758..880
                     /locus_tag="PF788_002859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305058.1"
                     /translation="MKVIFYCPKRADDILKASMEYQSTDYKRRYISWKTMIAMK"
     gene            856..954
                     /locus_tag="PF788_002860"
                     /pseudo
     CDS             856..954
                     /locus_tag="PF788_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429703.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="head morphogenesis protein"
BASE COUNT          512 a          130 c          194 g          391 t
ORIGIN      
        1 tggcgagaca agttctttaa agagcgtgaa ggtaaatatc aagtagaagg ttgttttatt
       61 gaatcaggtg cacttaataa taaaagtgat gaatacggta tcaaaaggaa cagacatgct
      121 caaatttatt ataattcagt tagaaatcga gataaacaga tagagatttc taaaattgct
      181 aaaaatacta atataaataa aaatttaatt caaagagttt atgaacatat atttgaaaat
      241 aagtatttat tagaaagtgg atttaaacaa tttgatcctg acttttatat ggctcaaagt
      301 tggcaacgtt taagagaagg gaaaaatatt aaaaaaatgg atataataat gtagaaacat
      361 gaagctcttg aacactatct aatgaataag tataatttac actatataga ggcacataaa
      421 cttacagaaa taaaatataa ttatagtatt ttaattaatt agaggtggaa atgattgcta
      481 atattaaaaa taaaagaaat taatgataaa agtgttacat ataaatattt tcctaataat
      541 gatgaaaata ttaagcctgg tattattcaa atggatatag atagtcttga agttatcaat
      601 gctgaaaaat ctagtttaga aaaaaataca agagataatt attttattca tgccatagac
      661 agaatataca taaatactag taaagggcta tttcctgaat ctgaactcgt agcatgggga
      721 taaagaaagt ttactttaaa aattttaacc ttcaaatgtg aaggttattt tttattgccc
      781 aaaacgtgct gatgacattt taaaagcaag tatggaatat cagtcgacag actataaacg
      841 gaggtatatc tcatggaaaa caatgatagc aatgaagtag cttatttgtt aaaagatggt
      901 aaatttacaa aagtatatgt caatcaagat agtgtatctt ttgtgccagg gtaacaagca
      961 accgaattat tatttaacag taaaccgaat tcaattgtta tgttacataa ccatcctgga
     1021 cagtcaggat tttcagaata tgatttattt acatttttta agcatccatc aataaaatca
     1081 atgacaatcg ttactaataa gggacaagta aaatttatta ccaagtcaaa taggtttcat
     1141 ggtaaaatag tgagtaaatt ttgtgctaaa tattttacgc atattaatat cattaatgat
     1201 agccatattg aaaaattatt gaaaaaa
//
LOCUS       DAMQWL010000265         1203 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.273, whole genome shotgun sequence.
ACCESSION   DAMQWL010000265 DAMQWL010000000
VERSION     DAMQWL010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.273"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            85..1044
                     /gene="hyl"
                     /locus_tag="PF788_002861"
     CDS             85..1044
                     /gene="hyl"
                     /locus_tag="PF788_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hemolysin"
                     /protein_id="HDG6305059.1"
                     /translation="MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNT
                     TVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKS
                     GLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGG
                     LIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYG
                     NQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYE
                     RVRDDYQLHWTSTNWKGTNTKDKWIDRSSERYKIDWEKEEMTN"
BASE COUNT          450 a          178 c          205 g          370 t
ORIGIN      
        1 gatatgtctc aactgcaata ttctaaattg acatattgat tattgtttcc tcaaatcgtt
       61 ttaaaaaata gaaggatgat gaaaatgaaa acacgtatag tcagctcagt aacaacaaca
      121 ctattgctag gttccatatt aatgaatcct gtcgctaatg ccgcagattc tgatattaat
      181 attaaaaccg gtactacaga tattggaagc aatactacag taaaaacagg tgatttagtc
      241 acttatgata aagaaaatgg catgcacaaa aaagtatttt atagttttat cgatgataaa
      301 aatcataata aaaaactgct agttattaga acgaaaggta ccattgctgg tcaatataga
      361 gtttatagcg aagaaggtgc taacaaaagt ggtttagcct ggccttcagc ctttaaggta
      421 cagttgcaac tacctgataa tgaagtagct caaatatctg attactatcc aagaaattcg
      481 attgatacaa aagagtatat gagtacttta acttatggat tcaacggtaa tgttactggt
      541 gatgatacag gaaaaattgg cggccttatt ggtgcaaatg tttcgattgg tcatacactg
      601 aaatatgttc aacctgattt caaaacaatt ttagagagcc caactgataa aaaagtaggc
      661 tggaaagtga tatttaacaa tatggtgaat caaaattggg gaccatatga tagagattct
      721 tggaacccgg tatatggcaa tcaacttttc atgaaaacta gaaatggctc tatgaaagca
      781 gcagataact tccttgatcc taacaaagca agttctctat tatcttcagg gttttcacca
      841 gacttcgcta cagttattac tatggataga aaagcatcca aacaacaaac aaatatagat
      901 gtaatatacg aacgagttcg tgatgactac caattgcact ggacttcaac aaattggaaa
      961 ggtaccaata ctaaagataa atggatagat cgttcttcag aaagatataa aatcgattgg
     1021 gaaaaagaag aaatgacaaa ttaatgtaaa ttatttgttc atgtacaaat aaatataatt
     1081 tataacttta gccgataact tcagaaatga tgtttttcgg ctaattttta tactgaattt
     1141 agtttaatta acttatgata tttttaattt aaactatcta cttgatttgc tttcctgact
     1201 taa
//
LOCUS       DAMQWL010000266         1186 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.274, whole genome shotgun sequence.
ACCESSION   DAMQWL010000266 DAMQWL010000000
VERSION     DAMQWL010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.274"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(51..650)
                     /locus_tag="PF788_002862"
     CDS             complement(51..650)
                     /locus_tag="PF788_002862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HDG6305060.1"
                     /translation="MAFELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVE
                     GTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEKI
                     KEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNGQLEIVTTPNQDNPLTEGKTPILGL
                     DVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYNATK"
     gene            complement(927..>1186)
                     /locus_tag="PF788_002863"
     CDS             complement(927..>1186)
                     /locus_tag="PF788_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDG6305061.1"
                     /translation="SFDTIYRNLHLFKDLGIIENTELDGEMKFRIACTNHHHHHFICE
                     KCGDTKVIDYCPIDQIKLSLPGVNIHKHKLEVYGVCESCQD"
BASE COUNT          385 a          206 c          168 g          427 t
ORIGIN      
        1 tgacaaaaaa ataacggtct catttaagag accgaacaag taatcatact ttattttgtt
       61 gcattatata attcgtcaac tttttcccag ttaactacat tccaaaatgc gccaatgtag
      121 tcagggcgtt tgttttgata ttttaggtaa taagcgtgtt cccatacgtc taaacctaaa
      181 ataggtgttt taccctcagt taatggatta tcttggtttg gtgtagtcac aatttctaac
      241 tggccattgt ttacgactaa ccaagcccaa cctgaaccaa agcgtgcagc tgctttgtca
      301 gcaaattctt ttttaaattc ttctaaagaa ccccattgtt ctttaatttt ttctactaca
      361 gtaccttttt cttctgagtt tggtgaaagt aactcccaga ataatgaatg gtttaaatgt
      421 ccaccgccat tattacgtac agcagtttgg atgttagctg gtacactgtc taaattagca
      481 acaatttctt caatagattt agattctaaa tctgtacctt ctactgcagc atttaatttc
      541 gtaacatacg tgttatgatg tctgtcatgg tgaatttcca tagtttcttt gtcaaaatgt
      601 ggttctaatg catcaaatgc gtatggtaat tttggtaatt caaaagccat aaataatcat
      661 cctcctaaaa tgtctgtaag taaataataa caagcagtga ctggttcaac aaagaatttg
      721 cttaaattct actacttatt attttctcta ctcatttaat ataactcaaa tcaaaaataa
      781 ttaaacattt tgtatataaa aagttaacag atttgccata aaatcatacg aacggagtat
      841 gaaatgaacc tttatcttct ataatataaa gaaatgagat ttatgcatac atctgaccaa
      901 atgtgcataa atctcatttc tttatattaa tcttggcaag actcacatac accataaact
      961 tcaagtttgt gtttgtgaat attaacacca ggtagtgata attttatctg atctattgga
     1021 caataatcta ttacctttgt atctccacac ttttcacaga taaaatgatg atgatgatgg
     1081 tttgtacaag cgattctaaa cttcatttca ccatcaagtt ctgtattttc aataattcct
     1141 aaatctttaa ataagtgcag gtttctatat attgtgtcga atgaaa
//
LOCUS       DAMQWL010000267         1119 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.275, whole genome shotgun sequence.
ACCESSION   DAMQWL010000267 DAMQWL010000000
VERSION     DAMQWL010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.275"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..326
                     /locus_tag="PF788_002864"
     CDS             <1..326
                     /locus_tag="PF788_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR01741 family protein"
                     /protein_id="HDG6305062.1"
                     /translation="IPKEYNISVQVFDDLWMDLYDLFEELRDLFKEEGLEPWTSCEFD
                     FTSEGKLKVSFDYIDWINTEFDQLGRENYYMYKKFGVLPEMEYEMEEIKEIDQYIKEQ
                     DEAEI"
     gene            337..825
                     /locus_tag="PF788_002865"
     CDS             337..825
                     /locus_tag="PF788_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin YezG family protein"
                     /protein_id="HDG6305063.1"
                     /translation="MTFEEKLSQMYNEIANEISGMIPVEWEKVYTIAYVDDEGGEVVF
                     NYTKPGSEDLNYYSDIPKDCNVSKDIFKNSWFKVYRMFDELRETFKKEDLEPWTSCEF
                     DFTRKGNLKVSFDYIDWIKLGFGPSGKENYYMYKKFGILPDMEYEMEEIRAVEKYVKE
                     QE"
BASE COUNT          451 a          103 c          210 g          355 t
ORIGIN      
        1 atatacctaa ggagtataac atctctgtgc aagtatttga tgatttatgg atggatttat
       61 atgatttgtt tgaggaatta agagatttat ttaaagaaga aggacttgaa ccatggacat
      121 catgtgaatt tgactttaca agcgaaggta aattaaaagt ttcatttgat tatatagatt
      181 ggataaatac agagtttgat caattaggcc gtgaaaatta ttatatgtat aaaaaatttg
      241 gggttttacc agaaatggaa tatgaaatgg aagaaattaa agaaatcgat caatatatta
      301 aagagcaaga tgaagctgaa atatagggga gataacatga ctttcgaaga aaagctaagt
      361 caaatgtaca atgaaattgc aaatgaaatc agtggaatga taccagtaga atgggaaaaa
      421 gtatatacaa ttgcctacgt agatgatgaa ggtggagagg ttgtttttaa ttatactaaa
      481 ccaggaagtg aagatttgaa ttattattca gatattccta aagattgcaa tgtctcaaaa
      541 gatattttta agaattcatg gtttaaagtt tatcgaatgt ttgatgagtt aagagaaact
      601 tttaaaaaag aagatttaga accgtggaca tcatgtgaat ttgactttac aagaaaggga
      661 aatttaaaag tatcatttga ttatatagat tggattaaat taggttttgg cccatcagga
      721 aaggaaaact actatatgta caaaaaattt ggtattttac cagatatgga atatgaaatg
      781 gaagaaattc gagcagtaga gaagtatgtt aaagagcaag agtagcagac atgttataaa
      841 agactgtgca aaatcaccct cgttttacat ttgattcaaa gaagaaggta aaagataaga
      901 ttatttgcaa cttaaaaagt caattagctt atcggtatcc atacatcatg gataaatgag
      961 ttcaactaat taacaaatca cgatataaat ttaaaattgt cattaattga aaaggttatt
     1021 gtagtgtatt ttataaagtt gatgtacatc gacttatttt ttaaaactta tatcaaaaaa
     1081 atatgagaaa agtatatact attaaaatgt tttttacta
//
LOCUS       DAMQWL010000268         1092 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.276, whole genome shotgun sequence.
ACCESSION   DAMQWL010000268 DAMQWL010000000
VERSION     DAMQWL010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.276"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            58..>1092
                     /locus_tag="PF788_002866"
     CDS             58..>1092
                     /locus_tag="PF788_002866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000803170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDG6305064.1"
                     /translation="MKPLHLKLNNFGPFLKEEIDFSKIDNNELFLISGKTGSGKTMIF
                     DAMTYALFGKASTEQREENDLRSHFADGKQPMSVTFEFQLNHRIYKVHRQGPYIKEGN
                     TTKTNAKFDVFEMVDGKYEIRESKVISGTQFIIELLGVNADQFRQLFILPQGEFKRFL
                     ISNSREKQGILRTLFDSEKFEAIREILKEEVKKEKAQIENRYQQIDLLWQEIESFDDD
                     NIKGLLEVATQQIDKLIENIPLLQARSKEILASVNESKETAIKEFEIIEKKTLENNIL
                     KDNINQLNKNKIDFVQLKEQQPEIEGIEAKLKLLQDITNLLNYIENREKIETKIANSK
                     KDISKTNNKIL"
BASE COUNT          482 a          121 c          181 g          308 t
ORIGIN      
        1 caatctaaaa agataaaaaa tattttagaa aacgaattga gaaaggagga ttaatgaatg
       61 aaaccattac atttaaagtt gaataatttc ggcccctttt taaaagaaga aattgatttt
      121 tctaaaattg ataataatga attgttttta ataagtggta agactggatc gggtaaaaca
      181 atgatttttg atgcaatgac ttatgccttg tttggtaaag catcaactga acaaagagaa
      241 gaaaatgatt tgagaagtca tttcgctgat ggtaaacagc cgatgtcagt aacatttgaa
      301 tttcaattaa atcatcgaat ttataaagtg catagacaag gcccttatat caaagaaggt
      361 aatacaacaa aaacgaacgc taaatttgat gtatttgaga tggtggatgg caagtatgaa
      421 attagagaaa gtaaagtaat ttcaggtacc caattcatta ttgaattatt aggagtaaat
      481 gcagatcaat tccgacaatt gtttattttg cctcaaggtg aattcaaacg ctttttaata
      541 tcaaacagtc gtgaaaagca agggatatta agaacactgt ttgacagtga aaaatttgaa
      601 gctatacgag aaatattaaa agaagaagta aaaaaagaaa aagctcaaat cgagaataga
      661 tatcaacaaa ttgacctttt atggcaagaa attgaatcat ttgatgatga caatataaaa
      721 ggcttattag aggttgccac tcaacagata gacaaattga ttgaaaatat accactttta
      781 caagctaggt cgaaagaaat actagcatct gtaaatgaaa gtaaagaaac tgctattaaa
      841 gaatttgaaa taatagaaaa gaaaacatta gaaaataata tattaaaaga taatattaat
      901 caactcaaca aaaataaaat tgatttcgtt caattgaaag aacaacaacc tgaaatagag
      961 ggaattgaag ctaagttaaa gttgttacaa gatattacaa acctattgaa ttatattgaa
     1021 aatagagaaa aaattgaaac taaaattgct aatagcaaaa aagatatttc taaaaccaat
     1081 aataaaatat tg
//
LOCUS       DAMQWL010000269         1086 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.277, whole genome shotgun sequence.
ACCESSION   DAMQWL010000269 DAMQWL010000000
VERSION     DAMQWL010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.277"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            165..785
                     /locus_tag="PF788_002867"
     CDS             165..785
                     /locus_tag="PF788_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000673114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305065.1"
                     /translation="MKFTEVEVIEHLVKAYKEAGKPTYPHENLYRGRNHSISGIGEDL
                     LGAYLISRLEGVQIFIDQPLSMIDKSLSTRYPDLLICEDNEIKNILEVKMDLGYQRKD
                     FIDYCRKKEEWISNIVGKQCVLSRKREDKIPMNIADDIKFHVVIYSENNGPKRFDEEI
                     MPIVNETCPHIEVYVLTSGQHPNLVNVNLEGININKDEFEILVNAL"
BASE COUNT          381 a          129 c          186 g          390 t
ORIGIN      
        1 gaattaacca aaatagttaa ttataatagc aaataattta atattttata aactatcatt
       61 caaccctctt aatttattag gaggtttttt gtatttatgc tttcaaatgt gtgatatact
      121 ttgtttgttg aaatatagag tatctataga tagggtgatt gagtatgaaa ttcactgaag
      181 tggaagttat cgaacatctt gtaaaggcat ataaagaagc aggaaagcct acttatcctc
      241 atgaaaattt atatcgagga cgtaatcata gtatttcagg tattggagaa gacttgctgg
      301 gtgcttattt gattagtaga ttggaaggtg tccaaatatt tattgatcag cctttatcta
      361 tgattgataa atctttaagt acaagatatc cggatttatt aatttgtgaa gataatgaaa
      421 ttaaaaatat actagaagtt aaaatggact taggatatca aagaaaagat tttatagatt
      481 attgccgaaa gaaagaagaa tggatttcaa atatcgtagg aaaacagtgt gtattgtcta
      541 gaaagagaga agacaaaatt cctatgaata tagctgatga tattaaattt catgttgtga
      601 tttacagtga aaacaatgga ccgaagcggt ttgatgaaga aatcatgcct atcgttaatg
      661 aaacatgtcc acatattgaa gtatatgtcc taacaagcgg tcaacaccct aatttagtaa
      721 atgttaatct tgaaggtatt aatattaata aagatgaatt tgaaatatta gtaaatgcgt
      781 tataaaaaaa tagagcatcc tccacgttat ggaggtgctc tgttttttat tgaaaagtat
      841 caagttaatt aatttaatat gcttaataag ttctaccttg acctttttct ctagcttctg
      901 ttcgatctct tatgtactca gtacatactg gattttctgt taattcatca actgtattag
      961 tttaatcaga agacgtgtct actttgtaag cttctaagaa cttattatat gatatagcgt
     1021 ttgagttttg ttgttcttct ataaatttct gtagttattt ttcaaaaacc gcatcattaa
     1081 ctgata
//
LOCUS       DAMQWL010000270         1081 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.278, whole genome shotgun sequence.
ACCESSION   DAMQWL010000270 DAMQWL010000000
VERSION     DAMQWL010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.278"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            64..561
                     /gene="efb"
                     /locus_tag="PF788_002868"
     CDS             64..561
                     /gene="efb"
                     /locus_tag="PF788_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complement convertase inhibitor Efb"
                     /protein_id="HDG6305066.1"
                     /translation="MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSIN
                     HNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTD
                     ATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLK
                     QGLVK"
     gene            715..1065
                     /gene="scb"
                     /locus_tag="PF788_002869"
     CDS             715..1065
                     /gene="scb"
                     /locus_tag="PF788_002869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complement inhibitor SCIN-B"
                     /protein_id="HDG6305067.1"
                     /translation="MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFH
                     DKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVA
                     LEKIYKEIDEIINR"
BASE COUNT          463 a          134 c          176 g          308 t
ORIGIN      
        1 tcaaaagttg tataaatagg ataacttaat aaatgtaaga taataatttg gaggataatt
       61 aacatgaaaa ataaattgat agcaaaatct ttattaacat tagcggcaat aggtattact
      121 acaactacaa ttgcgtcaac agcagatgcg agcgaaggat acggtccaag agaaaagaaa
      181 ccagtgagta ttaatcacaa tatcgtagag tacaatgatg gtacttttaa atatcaatct
      241 agaccaaaat ttaactcaac acctaaatat attaaattca aacatgacta taatatttta
      301 gaatttaacg atggtacatt cgaatatggt gcacgtccac aatttaataa accagcagcg
      361 aaaactgatg caactattaa aaaagaacaa aaattgattc aagctcaaaa tcttgtgaga
      421 gaatttgaaa aaacacatac tgtcagtgca cacagaaaag cacaaaaggc agtcaactta
      481 gtttcgtttg aatacaaagt gaagaaaatg gtcttacaag agcgaattga taatgtatta
      541 aaacaaggat tagttaaata aaacttcaat cgttgctgtt atctggaaat aattaattaa
      601 atgttatgtt aatttttgtt aatgaaaaaa gtaatctatt taatgacagg ttaatgtaat
      661 tgtcctgaaa ttgactatat actcagtaag tatcaatttt aaggagagct tataatgaaa
      721 tttaaaaaat atatattaac aggaacatta gcattacttt tatcatcaac tgggatagca
      781 actatagaag ggaataaagc agatgcaagt agtctggaca aatatttaac tgaaagtcag
      841 tttcatgata aacgcatagc agaagaatta agaactttac ttaacaaatc gaatgtatat
      901 gcattagctg caggaagctt aaatccatat tataaacgta cgattatgat gaatgaatat
      961 agagctaaag cggcacttaa gaaaaatgat ttcgtatcaa tggctgatgc taaagttgca
     1021 ttagaaaaaa tatacaaaga aattgatgaa attataaata gataataaat aaaacaggtt
     1081 g
//
LOCUS       DAMQWL010000271         1075 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.279, whole genome shotgun sequence.
ACCESSION   DAMQWL010000271 DAMQWL010000000
VERSION     DAMQWL010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.279"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..190)
                     /locus_tag="PF788_002870"
     CDS             complement(<1..190)
                     /locus_tag="PF788_002870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HDG6305068.1"
                     /translation="MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFV
                     ENAKEKATDFIDKVKGNKG"
BASE COUNT          378 a          185 c          146 g          366 t
ORIGIN      
        1 cgcctttgtt accttttact ttatcaataa aatcagttgc tttttctttt gcattttcaa
       61 cgaattcttt cgctttacca gaagctttat cttctttacc ttcgttttct aaatttttat
      121 tatcagtaac attacctact gtttctttaa cattaccttt tgcttgttca aatttacttt
      181 cgtctgccat aataaatgcc tcctcggaat aattaaatgt tatatataat acttacccac
      241 tgaaaaatta tctaaacatt ttacttaaat aatttttgat attgatttga cgtcatttta
      301 taactagcga aatagattca tcattaactt gagggagtgg gactgaaata ataaagaatc
      361 actaatgatt tatgatgtat tagtcactag ccatgtgaaa ttaaaaataa gaataaatga
      421 gtagcacgca tgcatatagg attttacttt atccgtaata gcatctcatt cctaaatatc
      481 atataaatac ctgtttaaat taaaaagccc agcaacatca cgttactgag ccattaatat
      541 gatttattta gcaggaataa ttagccagat tatcaaggaa gttcaagggc aatcaaaaca
      601 ttgttatata tgcatttata aaattttcaa gataatttat tattcatacc cttgcccttt
      661 gtttcaaaat tatgcccttt ttttgccctt gaaaacaacc acactcctaa attaataggt
      721 ggtgtggttt gatcatttat aatataacat aaaaacaacc acccagtaac tagtatgagt
      781 ggcgtagcga ctataacaac tctatgttat caagatatat gtatatgagt gatgacaagg
      841 aagatgtctc ctgtgagacc aacagccaga tatatggcct ctgccgggct atatagttca
      901 ctcctactat atacacatgt aattataaca taaaaaaata gacaagtacc gaagtacctg
      961 cctaaataac aacaagatta acatgtgaat aatggaaata aaaagtcagc ccgaaggcta
     1021 acttacgaat agatgaaaat ttgaacacat tgctgtgtct aaaatgatta tagca
//
LOCUS       DAMQWL010000272         1074 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.280, whole genome shotgun sequence.
ACCESSION   DAMQWL010000272 DAMQWL010000000
VERSION     DAMQWL010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.280"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            76..>1074
                     /locus_tag="PF788_002871"
     CDS             76..>1074
                     /locus_tag="PF788_002871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDG6305069.1"
                     /translation="MGYRTLKSIFHEHNESKMKEEYIKRFNSLASFNTNINIIPMENG
                     KKVNDLEYPLFFMVTKNLSKKQELISINSRKIDRALNSLPYAAREQYFNDLLIDELQS
                     TNEIENVFSTKQEIAHALNNQASEFLKFRGLVDQYKEIELNKKIKVDNVRDIRAIYDK
                     LVSNEINEQDKLDGELFRKNFVGVHDGSTNKYIHVGLQPETKIVEFIGEMLTFLKYFD
                     APQPFKIMASHYLFEYIHPFYDGNGRVGRFIIAKLLSDYYDNYTALTFSYVINRNKSK
                     YYKAFMTASNHLNCGDLTEFIDTMLELLIAGQERILDELIPKMDATEKLTLYLTSHY"
BASE COUNT          422 a          120 c          179 g          353 t
ORIGIN      
        1 taatatttag ctaatctaat gaaaattgat ttattggaca aaaaatacat tttaaatgag
       61 tagaggaggc tgcaaatggg ttacagaact ttaaaaagta tttttcatga acacaatgaa
      121 agtaaaatga aggaagagta tattaaaaga tttaattctt tagcttcttt caatactaat
      181 attaatatca tacctatgga aaatggaaaa aaagttaatg atttggaata tcctctattc
      241 tttatggtga ctaaaaatct atcaaaaaaa caagaattaa tatcaattaa tagtagaaaa
      301 attgatagag cacttaattc tttaccatat gcagctagag aacaatattt taatgattta
      361 ttaatcgatg aattacaaag tactaatgaa attgaaaatg tatttagtac taaacaagag
      421 attgcacatg cgttaaataa ccaagcatca gaatttctta agttcagagg cctcgtggat
      481 caatataaag agatagaact taataaaaaa attaaagttg ataatgtaag agacattaga
      541 gcgatttatg ataaattagt ttcaaatgaa attaacgaac aagataagtt agatggagag
      601 ctatttcgta aaaattttgt cggtgtgcat gatgggtcaa cgaataaata tatacatgtt
      661 gggttacaac ctgaaaccaa aattgttgaa tttataggtg aaatgctaac atttttaaaa
      721 tattttgatg cgcctcagcc gttcaaaatc atggctagtc attatctgtt tgaatatata
      781 catccttttt atgatggcaa tggtagagtt ggaagattta taattgccaa gctcttgagt
      841 gattattatg ataattatac tgctttgaca ttttcatatg ttataaatag aaataaatcg
      901 aaatattaca aggcgtttat gactgcttca aatcatttga attgtggtga tttgacggaa
      961 tttattgaca caatgcttga gctattgata gcaggacaag aaagaatact tgatgagtta
     1021 ataccaaaaa tggatgcgac tgaaaaatta acgctttatt taactagtca ttat
//
LOCUS       DAMQWL010000273         1070 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.281, whole genome shotgun sequence.
ACCESSION   DAMQWL010000273 DAMQWL010000000
VERSION     DAMQWL010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.281"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..419
                     /locus_tag="PF788_002872"
     CDS             <1..419
                     /locus_tag="PF788_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305070.1"
                     /translation="FISVLTCYTVMGFVSSRYLTKYLNYKFVSEICLVIFLIIYTYQS
                     FIAVTISMIFLGISSGLTRPQTINKLSSSSNLRVMLNYAETLYFIFNIAFLLMGGYLY
                     TIGTIQYLILFISLLIFIYLIIIFYFTRREQHENKN"
     gene            403..918
                     /locus_tag="PF788_002873"
     CDS             403..918
                     /locus_tag="PF788_002873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HDG6305071.1"
                     /translation="MKIKTEFKGNNIPYEYAAGADVSDSINGNPIKSFPFEVIELPEG
                     TKYLAWSLIDYDAIPVCGFAWIHWSVANVSVSGNSISIKADLSRTKGDYVQGKNSFTS
                     GLLAEDFSEIENHYVGPTPPDQDHQYELTVYALDHSLNLKNGFYLNEFLKEVNQHKID
                     QTSINLIGRKI"
BASE COUNT          388 a          122 c          167 g          393 t
ORIGIN      
        1 aatttatttc agtattaact tgttacacag ttatgggttt tgtatcttca cgttatttaa
       61 ctaaatactt gaattataag tttgtgtcag aaatttgttt agtaatattt ttaataatat
      121 atacatatca aagtttcata gcagttacta tttctatgat atttttaggt atttcttcag
      181 ggttaactcg tccacaaact ataaataaac tttctagcag tagtaactta agagtgatgc
      241 ttaattatgc agaaacgtta tattttattt ttaatatcgc atttttactt atgggtggtt
      301 acttatatac aataggaact attcaatact taatattatt tatttcgtta ttaattttta
      361 tatatttaat aataatattt tattttacaa ggagagagca acatgaaaat aaaaactgaa
      421 tttaaaggga acaatatacc atatgaatac gcagcaggtg cagatgtgag tgattctatt
      481 aacgggaatc caattaagtc atttccattt gaagtaattg aattaccgga agggactaaa
      541 tatcttgctt ggtctttaat tgactatgat gcaattcctg tatgtggctt tgcttggatt
      601 cattggagtg tagctaatgt aagtgttagt ggcaattcaa tttctataaa agcagattta
      661 tcaagaacaa agggcgacta tgtacaaggt aaaaatagct ttactagtgg gttgttggct
      721 gaagattttt cagaaataga aaatcactat gtaggaccta caccacctga tcaagatcat
      781 caatatgaat taacagttta tgcgttagat cattctttaa atttgaagaa tgggttctac
      841 ttgaatgaat ttttaaaaga agtaaatcaa cataaaattg atcaaacaag tattaacctt
      901 ataggaagaa aaatttaata ctaaatatct catcaatata aaattgttca attaaaagta
      961 caaagaaaca aaggttttaa tttatatatt aggtacggcg ttcgctataa tgcaaagaag
     1021 taattaaatt taagaaatgt aaacttagtt attgtaatgt gaatttattt
//
LOCUS       DAMQWL010000274         1064 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.282, whole genome shotgun sequence.
ACCESSION   DAMQWL010000274 DAMQWL010000000
VERSION     DAMQWL010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.282"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..468)
                     /locus_tag="PF788_002874"
     CDS             complement(<1..468)
                     /locus_tag="PF788_002874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HDG6305072.1"
                     /translation="MFLCKRQIDINARFGLPRIAFMSAVATIIMFLVSYEVMYFLSNT
                     PLSDRHFLIFLLLVFMTYPLHKSIHLLFFLPYRKSFKVHKLTKRKWLIFYNTYVNQPV
                     HKFYFCINLILPLIILSAMFVYLTISFPQYGHYFMFLLALNFGISITDLLYLKI"
BASE COUNT          430 a          129 c          171 g          334 t
ORIGIN      
        1 tatttttaaa tataataaat ctgtaatgga aataccgaaa ttcaatgcca ataagaacat
       61 aaaataatgt ccatattgcg ggaatgaaat tgttagataa acgaacattg cagataagat
      121 aattaacggc aatattaagt taatgcaaaa ataaaatttg tgtacaggtt gattgacgta
      181 ggtattatag aatataagcc attttctttt agttaactta tgaactttaa acgattttct
      241 atatggtaag aaaaataata aatgtatact tttatgtaat ggatacgtca taaatacaag
      301 taataaaaag atgagaaaat gtctatctga taatggcgta ttagataaaa aatacattac
      361 ttcataacta actaaaaaca taatgatggt tgcaactgca ctcataaatg caattctagg
      421 caaaccaaat cgtgcattga tatcaatttg tcttttacat aaaaacatat cttacgcctc
      481 atctcttttc aatataagtt agattataac taactcaggt tcagtaattc aatagtaaca
      541 tatcatgtta gaagaattgt tatataagaa gaaaggagcg acgtattgtt tgatttgaaa
      601 cgcgaaagtg gggattggta aaattgtctg attgactagc gtagaagtag aatgcagaac
      661 aaatttctgc gaacacatat tcttgctaat aaagcatcac ttatgaaaaa ggcgcgtgtg
      721 acatgagtat ttgaaaactt gaataatata aaaaatggat atggcagggc atatgcaaaa
      781 gcatcttttg accaactaag ttatacaaat gctaaaaata tagtgatatg taattataat
      841 aaacaccaga ttaataattt gtgcaagtaa ggtatatgta atgtgtatat aaggttcggc
      901 tcaatgaaaa tataagtatg ttgtttgtcg ataatgattt aagtaaagcg taatcaaagt
      961 gcaaggataa cacaatgaat cctaagcaat gttttcaatc aattcataaa tatgatttaa
     1021 gcgaaaatca ctacaaacaa tgtcttccta taatttgtaa acat
//
LOCUS       DAMQWL010000275         1058 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.283, whole genome shotgun sequence.
ACCESSION   DAMQWL010000275 DAMQWL010000000
VERSION     DAMQWL010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.283"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            123..1058
                     /locus_tag="PF788_002875"
                     /pseudo
     CDS             123..1058
                     /locus_tag="PF788_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277741.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          432 a          152 c          153 g          321 t
ORIGIN      
        1 aaaaaataag acactttgcc aaacttgcac ataaatgttt aattcaataa tttgaatttt
       61 ctgtgttggg tcccttcgta taatttaata aataccacta aactaaatta atgaagtgcc
      121 ttatgtataa aaattataac ttgatccaac ttacactacc aatagaaact tctgttagaa
      181 ttcctcaaat tgatatttcg cgatatgtta atgaaattgt tgaaacgata cctgatagcg
      241 aattcgataa attcagacat catcgtggcg caacatccta tcatccaaaa atgatgttaa
      301 aaatcacctt atatgcatat actcaatctg tattttctgg tcgtagaata gagaaattac
      361 ttcatgacag tattcgaatg atgtggttag ctcaaaatca aacaccttct tataaaacta
      421 ttaatcgtat tagagtgaat cctaatactg atgcgttaat tgaatcttta tttatccagt
      481 ttcatagtca atgtttaaag caaaatctta ttgatggtac aaaagtagaa gctaatgcca
      541 ataggtatac atttgtgtgg aagaaaagta ttcaaaatca cgaatcgaaa ttgaacgaaa
      601 attcaaaaac attatatcgt gacttagttg aagaaaaaat aataccagag ataaaagaag
      661 atggagatag cgatttaaca atagaagaaa tagatttaat tggtagtcat ttagataaag
      721 aaatcgaagg tttaaatcat tctattgaga acgaagatag tactcaaatt agaaaacaga
      781 cccgtaaaaa agaactaaga ttaagaagtt caaaaataaa tttgatgatt attccgaaag
      841 aaaaaataaa tatgaagaac aaaaatcgat tcttaaagat agaaatagct tttctaaaac
      901 tgatcatgat gcaactttta tgagaatgaa ggaagaccat atgaaaaatg gccaacttaa
      961 gccaggatac aatttacaaa tagcgacaaa ttctcaattt gttttatcct atgacctatt
     1021 tcaaaaccca acagatacta gaactttaat tccatttt
//
LOCUS       DAMQWL010000276         1050 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.284, whole genome shotgun sequence.
ACCESSION   DAMQWL010000276 DAMQWL010000000
VERSION     DAMQWL010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.284"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..921
                     /gene="hlgA"
                     /locus_tag="PF788_002876"
     CDS             <1..921
                     /gene="hlgA"
                     /locus_tag="PF788_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-component gamma-hemolysin HlgAB subunit A"
                     /protein_id="HDG6305073.1"
                     /translation="NKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQ
                     DITSKRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPF
                     QYNISLKTKDSNVDLINYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKT
                     ISYNQKNYVTEVESQNSKGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFV
                     PDNQLPPLIQSGFNPSFITTLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRK
                     HDAFKNRNVTVKYEVNWKTHEVKIKSITPK"
BASE COUNT          417 a          178 c          158 g          297 t
ORIGIN      
        1 aataaaatat taacagcaac tttagcagtt ggtttaatag cccctttagc caatccattt
       61 atagaaattt ctaaagcaga aaataagata gaagatatcg gccaaggtgc agaaatcatc
      121 aaaagaacac aagacattac tagcaaacga ttagctataa ctcaaaacat tcaatttgat
      181 tttgtaaaag ataaaaaata taacaaagat gccctagttg ttaagatgca aggcttcatt
      241 agctctagaa caacatattc agacttaaaa aaatatccat atattaaaag aatgatatgg
      301 ccatttcaat ataatatcag tttgaaaacg aaagactcta atgttgattt aattaattat
      361 cttcctaaaa ataaaattga ttcagcagat gttagtcaga aattaggcta taatatcggc
      421 ggaaacttcc aatcagcgcc atcaatcgga ggcagtggct cattcaacta ctctaaaaca
      481 attagttata atcaaaaaaa ctatgttact gaagtagaaa gtcagaactc taaaggtgtt
      541 aaatggggag tgaaagcaaa ttcattcgtt acaccgaatg gtcaagtatc tgcatatgat
      601 caatacttat ttgcacaaga cccaactggt ccagcagcac gagactattt cgtcccagat
      661 aatcaactac ctcctttaat tcaaagtggc tttaatccat catttattac aacattgtca
      721 cacgaaagag gtaaaggtga taaaagcgag tttgaaatca cttacggcag aaacatggat
      781 gctacatatg cttacgtgac aagacatcgt ttagccgttg atagaaaaca tgatgctttt
      841 aaaaaccgaa acgttacagt taaatatgaa gtgaactgga aaacacatga agtaaaaatt
      901 aaaagcatca cacctaagta aacagttcaa tcatcttaaa aaatcctggg acacttcata
      961 cttgtctcag gattttttaa caaattgaat cagccttata acattaaatt attttatcgt
     1021 acattaaatt taataataac aactgatttt
//
LOCUS       DAMQWL010000277         1030 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.285, whole genome shotgun sequence.
ACCESSION   DAMQWL010000277 DAMQWL010000000
VERSION     DAMQWL010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.285"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            307..492
                     /locus_tag="PF788_002877"
     CDS             307..492
                     /locus_tag="PF788_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305074.1"
                     /translation="MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFL
                     IIFGIVACSTNVNFFFQ"
BASE COUNT          357 a          150 c          149 g          374 t
ORIGIN      
        1 taaaactaaa gatagcttac agttaacgat atttatactt aatatagcct taattattct
       61 atactgtgca ccattactat tcatttatgt attctagtgc ttcattaata ttttaatgca
      121 tcagtttaag taaattccat ttggaaaata aaaagcaaat atcatcatca aattaacata
      181 tttaacgtta tactttcata aaatttgaaa caattgaaca tccttacttt agctttatat
      241 ctttatttca agtcatgttt tcaactattt taatgaatta aacatatatt ataaggagtc
      301 aacatcatga ataaacatat aaataaaaaa gccgcaaaac tacttgaaga ttataaaaag
      361 gttcaacaaa gaaaatcgaa agaaactgat agaggttgtt tgaaaagtgt catcatgctt
      421 atcgtcttat ttttcttaat tatttttggt attgtggcat gttctacaaa cgtaaacttt
      481 ttcttccagt aaaagagtga gatagaaatg ataaagaacc actaatgatt tattatgtag
      541 tggttcttta tcattagctg tagctaatgt gtacttaaaa aatgaataca tgagtaaagc
      601 tcatgcataa gaaatactaa ttgctaaaga aaaagtattt ctttatcgat gtcctacccc
      661 aacttgcatt gtctgtagaa attggggttc caatttctct atgttggggc cccgccaact
      721 tgcacatttt tgtaagctga cttttcgcca gcttctatat tggggccccc gccaacttgc
      781 attgtttgtt ggaattggtg atcctatttc tctctgttgt ggccccacga gtattgaaaa
      841 aacttgttat aagcttattt tcatttagtc aactactacc aatatagcac tagaactgga
      901 aatgataatt taatattgta cacttttgat tgtttaaaca tgtagatatt ttaaaaaata
      961 ggagagcaaa gtaaataatt gatatagtta ttttgagagt aatcctagga actattgtat
     1021 ttatatttgt
//
LOCUS       DAMQWL010000278         1023 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.286, whole genome shotgun sequence.
ACCESSION   DAMQWL010000278 DAMQWL010000000
VERSION     DAMQWL010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.286"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..712
                     /locus_tag="PF788_002878"
     CDS             <1..712
                     /locus_tag="PF788_002878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDG6305075.1"
                     /translation="QNSNQKKTNKVTNNYFGYYSFREAPKTQIYTVKKGDTLSAIALK
                     YKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKPKTVSSNNKSNSNSSTLNYLK
                     TLENRGWDFDGSYGWQCFDLVNVYWNHLYGHGLKGYGAKDIPYANNFNSEAKIYHNTP
                     TFKAEPGDLVVFSGRFGGGYGHTAIVLNGDYDGKLMKFQSLDQNWNNGGWRKAEVAHK
                     VVHNYENDMIFIRPFKKA"
     gene            740..>1023
                     /locus_tag="PF788_002879"
     CDS             740..>1023
                     /locus_tag="PF788_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan bridge formation glycyltransferase
                     FemA/FemB family protein"
                     /protein_id="HDG6305076.1"
                     /translation="MKFSTLSEEEFTNYTKKHFKHYTQSIELYNYRNKINHEAHIVGV
                     KNDKNEVIAACLLTEARIFKFYKYFYSHRGPLLDYFDAKLVCYFFKELSK"
BASE COUNT          415 a          124 c          166 g          318 t
ORIGIN      
        1 tcaaaattct aatcagaaga aaacgaataa agttactaat aattactttg gttactacag
       61 ttttagagaa gctccaaaaa cacaaatcta tactgtaaaa aaaggagaca cacttagtgc
      121 tatagcatta aaatacaaaa ctacagtttc aaatattcaa aatacaaata atatagcaaa
      181 tcctaattta atatttattg gtcaaaaatt aaaagtgcca atgacaccat tagtagaacc
      241 aaaaccaaaa acagtgtctt caaataataa aagtaatagt aatagcagta cattaaatta
      301 tttgaaaaca ttagagaata gaggatggga tttcgacggt agttatggat ggcaatgttt
      361 cgatttagtt aatgtatatt ggaatcatct ttatggtcat ggattaaaag gatatggagc
      421 taaagatata ccatatgcaa ataattttaa tagtgaagct aaaatttatc acaacacacc
      481 aactttcaaa gctgaacctg gggacttagt ggtttttagt ggaagatttg gtggaggata
      541 tggtcataca gctattgtct taaatggtga ttatgatgga aaattaatga agttccaaag
      601 tttagatcaa aactggaata atggtggatg gcgtaaagca gaggttgcac ataaagttgt
      661 tcataattat gaaaatgata tgatttttat tagaccattt aaaaaagcat aatttaaatc
      721 gaaggcagga cattgaaata tgaaattttc aactttaagt gaagaagaat ttaccaacta
      781 caccaaaaag cacttcaaac attatacaca gtctatagaa ttatataatt atagaaataa
      841 aataaatcat gaagcacata ttgtgggagt gaagaatgat aaaaatgaag ttatagctgc
      901 atgtttatta acagaggcac gaatttttaa attctacaaa tatttctact ctcatagagg
      961 tcctttactt gattatttcg atgctaaatt agtttgttac ttttttaaag aattatctaa
     1021 att
//
LOCUS       DAMQWL010000279         1009 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.287, whole genome shotgun sequence.
ACCESSION   DAMQWL010000279 DAMQWL010000000
VERSION     DAMQWL010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.287"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..>1009)
                     /locus_tag="PF788_002880"
     rRNA            complement(<1..>1009)
                     /locus_tag="PF788_002880"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          230 a          298 c          196 g          285 t
ORIGIN      
        1 taaaacgatt ataggtggta caggaatatc aacctgttat ccatcgccta cgcctgtcgg
       61 cctcagctta ggacccgact aacccagagc ggacgagcct tcctctggaa accttagtca
      121 atcggtggac gggattctca cccgtctttc gctactcaca ccggcattct cacttctaag
      181 cgctccacat gtccttacga tcatgcttca acgcccttag aacgctctcc taccattgtc
      241 caaaggacaa tccacagctt cggtaatatg tttagccccg gtacattttc ggcgcagtgt
      301 cactcgacta gtgagctatt acgcactctt taaatgatgg ctgcttctaa gccaacatcc
      361 tagttgtctg ggcaacgcca catccttttc cacttaacat atattttggg accttagctg
      421 gtggtctggg ctgtttccct ttcgaacacg gaccttatca cccatgttct gactcccaag
      481 ttaaattaat tggcattcgg agtttgtctg aattcggtaa cccgagaggg gcccctcgtc
      541 caaacagtgc tctacctcca ataatcatca cttgaggcta gccctaaagc tatttcggag
      601 agaaccagct atctccaggt tcgattggaa tttctccgct accctcagtt catccgctca
      661 cttttcaacg taagtcggtt cggtcctcca ttcagtgtta cctgaacttc aacctgacca
      721 agggtagatc acctggtttc gggtctacga ccaaatacta aacgccctat tcagactcgc
      781 tttcgctacg gctccacatt tactgcttaa ccttgcatca aatcgtaact cgccggttca
      841 ttctacaaaa ggcacgccat cacccattaa cgggctctga ctacttgtaa gcacacggtt
      901 tcaggttcta tttcactccc cttccggggt gcttttcacc tttccctcac ggtactggtt
      961 cactatcggt cactagagag tatttagcct taggagatgg tcctcccag
//
LOCUS       DAMQWL010000280         1006 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.288, whole genome shotgun sequence.
ACCESSION   DAMQWL010000280 DAMQWL010000000
VERSION     DAMQWL010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.288"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..423
                     /locus_tag="PF788_002881"
     CDS             <1..423
                     /locus_tag="PF788_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDG6305077.1"
                     /translation="DKLGYLFQNYGLIDNLTVNENLDIGLAYKKISKKEKEQIKIRYI
                     EQFGLSNSLKRKVHTLSGGEQQRVALIRMMLKDPIVMLADEPTGALDPKTGQMIIQSL
                     FGLVDENKVLILATHDMAIANQCDEIIDLEQYRKVASM"
     gene            complement(511..801)
                     /locus_tag="PF788_002882"
     CDS             complement(511..801)
                     /locus_tag="PF788_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305078.1"
                     /translation="MFYACHFKVKIGGVILTRTYNIIGILSCLISFIIMALPMIWYTA
                     SALWFFPGAIMILLLSLVIVFCYIKTKNQLHLLLIVLNIIILLFFSLPLLLS"
BASE COUNT          421 a          111 c          159 g          315 t
ORIGIN      
        1 gataaattag gatatttatt tcaaaattat ggattaatcg ataatttgac agtaaatgaa
       61 aatttagata ttggattagc atataaaaaa ataagtaaga aagaaaaaga acaaataaag
      121 atacgttata tagaacagtt tggtctgtca aacagtttaa aaagaaaagt tcatacgcta
      181 agtggaggtg aacaacaacg tgtcgcttta attagaatga tgttaaaaga tccgattgtt
      241 atgttagctg atgaaccaac gggtgcgtta gatcctaaaa caggacagat gattattcaa
      301 tcattatttg gtttggtcga tgaaaataaa gtgctgattt tagcaacaca tgatatggct
      361 attgcaaatc aatgtgacga aataatagat ttagaacagt atagaaaagt agcatctatg
      421 tgatatccaa aagataaaat taaaagccaa tcaatgggaa atgttgactt caacactccg
      481 tttgattggc ttttatactg tgttactaag ttatgaaagt aacaacggca aactgaaaaa
      541 aagcaatata ataatattta atacgattag taataaatgt aattgatttt tcgttttaat
      601 atagcaaaaa acaatgacta aagataacaa caatatcatg attgcacctg ggaagaacca
      661 taatgctgaa gctgtgtacc aaatcattgg taacgccata ataataaaag atataagaca
      721 agaaaggata ccaataatat tataagttct agtcaaaatt acacctccaa ttttcacttt
      781 aaaatgacat gcgtaaaaca atcattttaa atacattata caataaaatt aaattgtgcg
      841 gtagaagaat ttgaaattaa attgaattgt ttttggtagt tggtatattt ataacactct
      901 gcaaaagaat gtagcaaaat tagataaatt agattattta aaattatgcg tgatattatt
      961 atttttatca tgcaaataat tataataaca atatttaatt attgta
//
LOCUS       DAMQWL010000281         1003 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.289, whole genome shotgun sequence.
ACCESSION   DAMQWL010000281 DAMQWL010000000
VERSION     DAMQWL010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.289"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            25..144
                     /locus_tag="PF788_002883"
     CDS             25..144
                     /locus_tag="PF788_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305079.1"
                     /translation="MMLISFIYNNMDNNNTINRNLHSEFAIIMLLKINEKGAV"
     gene            147..974
                     /locus_tag="PF788_002884"
     CDS             147..974
                     /locus_tag="PF788_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDG6305080.1"
                     /translation="MWKWEAENDAKGVVVIAHNILEHTGRYAYVITMLRRNGYHVIMG
                     DLPGQGQTSRANKGQIENFQTYHESLLDWLKIANEYKIPTYVLGVGLGGLILLNLLEK
                     VELPIEGMMLISPMLELQKNGKNRKDKLVSNIGKISKDTRFNVGVEPKDLTRNLEIVE
                     ETVNDGLMLKKATYHWYNTINETMKDTMAHIHDIQPMPTLLMYGTKDLIVDTRAIDEF
                     KEKYQTPELYFKAWQGFYHEVHNEPERDEVMRYILTFLNNSVNTMGFIVEDDEIVEI"
BASE COUNT          382 a          115 c          193 g          313 t
ORIGIN      
        1 taattatgta taattacact attattgatg ttgatttcat ttatatataa taatatggac
       61 aacaataata ctataaatag aaatctacat agtgaatttg ctataattat gttattgaag
      121 attaatgaaa aaggggcagt ataataatgt ggaagtggga agctgaaaat gatgcgaaag
      181 gcgtcgttgt tattgctcat aatatattag aacatacggg aagatatgca tatgttatta
      241 cgatgttaag aagaaatggc tatcatgtga ttatgggaga tttgcctggt caaggtcaaa
      301 cttcaagagc taataaagga caaattgaaa actttcaaac gtatcacgaa agtttgctag
      361 actggttaaa gatagctaat gaatataaaa ttcctactta tgtattaggg gtaggacttg
      421 gcggtttgat tttattaaat ttacttgaaa aagtagaatt gccaatcgag gggatgatgt
      481 taatttctcc tatgctagaa cttcaaaaga atggaaaaaa tcgtaaagat aaacttgttt
      541 caaatatagg taaaatttca aaagacacac gttttaatgt tggtgtagaa ccaaaagatt
      601 taacacgtaa tttagaaatt gttgaagaaa cagttaacga tggtttaatg ttaaaaaaag
      661 caacgtatca ttggtataat acaattaatg agacgatgaa agatacgatg gctcatattc
      721 atgacattca accaatgcca acgctattaa tgtatggaac gaaggattta attgttgata
      781 ctagggcaat tgatgagttt aaagaaaaat atcaaacacc tgaattatat tttaaagctt
      841 ggcaaggttt ttaccacgag gttcacaatg agccagaacg tgatgaagta atgcgttata
      901 ttctgacttt cttaaataac agcgtcaata caatgggctt tattgttgaa gatgacgaaa
      961 ttgtagaaat ttaatattct aaaaaggttg ggacataaat ccc
//
LOCUS       DAMQWL010000282         1002 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.290, whole genome shotgun sequence.
ACCESSION   DAMQWL010000282 DAMQWL010000000
VERSION     DAMQWL010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.290"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            10..85
                     /locus_tag="PF788_002885"
     tRNA            10..85
                     /locus_tag="PF788_002885"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:43..45,aa:Val,seq:tac)
     gene            102..177
                     /locus_tag="PF788_002886"
     tRNA            102..177
                     /locus_tag="PF788_002886"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:135..137,aa:Thr,seq:tgt)
     gene            183..258
                     /locus_tag="PF788_002887"
     tRNA            183..258
                     /locus_tag="PF788_002887"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:216..218,aa:Lys,seq:ttt)
     gene            262..343
                     /locus_tag="PF788_002888"
     tRNA            262..343
                     /locus_tag="PF788_002888"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:296..298,aa:Leu,seq:tag)
     gene            347..421
                     /locus_tag="PF788_002889"
     tRNA            347..421
                     /locus_tag="PF788_002889"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:379..381,aa:Gly,seq:gcc)
     gene            432..520
                     /locus_tag="PF788_002890"
     tRNA            432..520
                     /locus_tag="PF788_002890"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:466..468,aa:Leu,seq:taa)
     gene            539..612
                     /locus_tag="PF788_002891"
     tRNA            539..612
                     /locus_tag="PF788_002891"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:573..575,aa:Arg,seq:acg)
     gene            622..695
                     /locus_tag="PF788_002892"
     tRNA            622..695
                     /locus_tag="PF788_002892"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:656..658,aa:Pro,seq:tgg)
     gene            713..788
                     /locus_tag="PF788_002893"
     tRNA            713..788
                     /locus_tag="PF788_002893"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:746..748,aa:Ala,seq:tgc)
     gene            810..883
                     /locus_tag="PF788_002894"
     tRNA            810..883
                     /locus_tag="PF788_002894"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:844..846,aa:Met,seq:cat)
     gene            912..985
                     /locus_tag="PF788_002895"
     tRNA            912..985
                     /locus_tag="PF788_002895"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:946..948,aa:Ile,seq:cat)
BASE COUNT          225 a          233 c          274 g          270 t
ORIGIN      
        1 ttttaaatcg gagaattagc tcagctggga gagcatctgc cttacaagca gagggtcggc
       61 ggttcgaacc cgtcattctc caccatttat tcttacatat tgccggccta gctcaattgg
      121 tagagcaact gacttgtaat cagtaggttg ggggttcaag tcctctggcc ggcaccatgg
      181 aagagccatt agctcagttg gtagagcatc tgacttttaa tcagagggtc agaggttcga
      241 atcctctatg gctcaccatt tgcgggtgtg gcggaattgg cagacgcact agacttagga
      301 tctagcgcct tacggcgtgg gggttcgact cccttcaccc gcatatgcag aagtagttca
      361 gcggtagaat acaaccttgc caaggttggg gtcgcgggtt cgaatcccgt cttctgctcc
      421 atttttatag tgccggggtg gcggaactgg cagacgcaca ggacttaaaa tcctgcggtg
      481 agtgatcacc gtaccggttc gattccggtc ctcggcacca ttttcaataa aaacatatgc
      541 gcccgtagct caattggata gagcgtttga ctacggatca agaggttatg ggttcgactc
      601 ctatcgggcg cgttaattat acgggaagta gctcagcttg gtagagcact tggtttggga
      661 ccaaggggtc gcaggttcga atcctgtctt cccgatatac tgtaattatt atgggggctt
      721 agctcagctg ggagagcgcc tgctttgcac gcaggaggtc agcggttcga tcccgctagt
      781 ctccaccata ttatttacaa actatataag gcggtgtagc tcagctggct agagcgtacg
      841 gttcataccc gtgaggtcgg gggttcgatc ccctccaccg ccactattta ttagttgtaa
      901 aattatattt aggaccttta gctcagttgg ttagagctaa cggctcataa ccgttcggtc
      961 gcaggttcga gtcctgcaag gtccatataa ttttggagga at
//
LOCUS       DAMQWL010000283          954 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.291, whole genome shotgun sequence.
ACCESSION   DAMQWL010000283 DAMQWL010000000
VERSION     DAMQWL010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.291"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            29..742
                     /locus_tag="PF788_002896"
     CDS             29..742
                     /locus_tag="PF788_002896"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDG6305081.1"
                     /translation="MAKLNIEVFADGADIEEMKAAYKNKQVDGFTTNPSLMAKAGVTD
                     YKAFAEEAVKEIPDASISFEVFADDLETMEKEAAILKQYGENVFVKIPIVNTKGESTI
                     PLIKKLSADNVRLNVTAVYTIEQVKEITEAVTEGVPTYVSVFAGRIADTGVDPLPLMK
                     EAVKVTHSKDGVKLLWASCRELFNVIQADEIGADIITCPADVVKKVNTNLGRDINELS
                     VDTVKGFAKDIQSSGLSIL"
BASE COUNT          368 a          125 c          183 g          278 t
ORIGIN      
        1 ttaataagaa tcaaggaggc tatattatat ggctaaacta aatatagaag tatttgcgga
       61 cggtgcagat attgaagaaa tgaaagcagc ttataaaaac aaacaagtgg atggttttac
      121 aacaaatcct agtttaatgg ctaaagcggg cgtaacagat tacaaagctt ttgctgaaga
      181 agctgtgaaa gaaattccag atgcttcaat ttcatttgaa gtatttgcag acgatttaga
      241 aactatggaa aaagaagcag caattttaaa acaatatggc gaaaatgtat ttgttaaaat
      301 tcctattgta aatacaaaag gtgaatcaac gattccttta attaaaaaac tttcagctga
      361 caatgtgaga ttaaacgtta cggctgttta cacaattgaa caagttaaag aaataactga
      421 agcagtaact gaaggtgtgc caacatatgt ttcagtattt gcaggacgta ttgcagatac
      481 aggcgtagat ccattaccat taatgaaaga ggctgtaaaa gttacgcata gtaaagacgg
      541 cgttaaatta ttatgggcaa gttgccgcga attattcaat gtgattcaag ctgatgaaat
      601 tggtgcagat attattacat gcccagcaga tgttgtgaaa aaagtgaata caaacttagg
      661 tcgcgatatt aacgaattat cagtagatac agttaaaggc tttgcgaaag atattcaatc
      721 ttcaggtctt tctattctat aatatataaa tatatttaaa ccctcatagg cattgtgctt
      781 atgggggttt ttccatcata gttattaatg aagaagaagt caaaattcag ctaagtaaaa
      841 gctcgagtta taaaaaagtc taaattgatt caacaggagt agaaaaggaa attagtcttg
      901 catattttag aaaatgaata aaaacagtta ctatatgcaa ctcaagaatt aaat
//
LOCUS       DAMQWL010000284          953 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.292, whole genome shotgun sequence.
ACCESSION   DAMQWL010000284 DAMQWL010000000
VERSION     DAMQWL010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.292"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            39..593
                     /locus_tag="PF788_002897"
     CDS             39..593
                     /locus_tag="PF788_002897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001661460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4888 domain-containing protein"
                     /protein_id="HDG6305082.1"
                     /translation="MNKKLLTKTLIASALVLTTVGSGFHSSSNYNGINNVAKAEQTTD
                     NELWKNVRDALKEANIIDKTDNENVKVTYKLANGGENSIEGTANLNELSNSNNKPINS
                     DSVKSIDLSRKNPNGDRFDANDAWKKLTDKLKEKQIVKDGDTVTIHSKDEKDPKISAK
                     VGEVYNDNKRLMLFKKDIDKITIN"
BASE COUNT          383 a          125 c          142 g          303 t
ORIGIN      
        1 ttgtaatcga ttgcaaataa attataggag aaaataaaat gaataaaaaa ctattaacaa
       61 aaacattgat agcaagtgct ttagttttaa caacagtagg ttcaggtttt cattcttctt
      121 caaattataa tggtattaat aacgttgcaa aagctgagca aacgacagat aacgaattgt
      181 ggaaaaatgt aagagacgct ttaaaagaag cgaatattat cgataaaaca gataatgaaa
      241 atgtcaaagt gacttataaa ttagcaaatg gcggtgaaaa cagtattgaa ggtaccgcca
      301 atttaaatga acttagcaat tctaataaca aaccgatcaa tagcgatagt gtaaaaagca
      361 ttgatttgtc aaggaaaaat cccaatggag atagatttga cgcaaatgat gcatggaaaa
      421 aattaactga taaattaaaa gaaaagcaga ttgtgaaaga cggtgataca gtaactattc
      481 atagtaaaga cgaaaaagac cctaaaatct cagctaaagt cggtgaagtc tataatgata
      541 acaaacgatt gatgttgttt aaaaaggata tagataaaat cactataaac tagttataga
      601 taaagacagg ttactttttt aatgtaactt gtcttttttt aagaggcagt atctcaaata
      661 ttaatttata atttctaaat ctatatctat actttatcta tttctaaatc tatatctata
      721 ctttatctat ttctatatac acactcatcc ctcactgcaa cacagggcgt ttctcagcgt
      781 cttaaaataa aaaaacgcca ctcgtaagtg acattaaaaa atatctttta taacatatcc
      841 agtatttttg tttgatctgg aaaattcatt tttgtatata ggtcatctat agtaattgta
      901 tagaaagaat gtgaataatt acttattagt ttatccatat ttttcatcaa ttt
//
LOCUS       DAMQWL010000285          940 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.293, whole genome shotgun sequence.
ACCESSION   DAMQWL010000285 DAMQWL010000000
VERSION     DAMQWL010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.293"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..805)
                     /locus_tag="PF788_002898"
     CDS             complement(<1..805)
                     /locus_tag="PF788_002898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDG6305083.1"
                     /translation="MNVYLAEFLGTAILILFGGGVCANVNLKRSAANGADWIVITAGW
                     GLAVTMGVFAVGQFSGAHLNPAVSLALALDGSFDWSLVPGYIVAQMLGAIVGATIVWL
                     MYLPHWKATEEAGAKLGVFSTAPAIKNYFANFLSEIIGTMALTLGILFIGVNKIADGL
                     NPLIVGALIVAIGLSLGGATGYAINPARDLGPRIAHAILPIAGKGGSNWSYAIVPILG
                     PIAGGLLGAVVYAVFYKHTFNIGCAIAIVVVIITLILGYILNKSSKKGDI"
BASE COUNT          322 a          211 c          141 g          266 t
ORIGIN      
        1 cgatatcacc tttttttgat gatttattta aaatgtaacc taaaatcaaa gtaataataa
       61 ctacaacaat tgcaattgca caaccaatat taaatgtatg tttataaaat acagcgtata
      121 ccactgcacc taataaacca ccggcaattg gtcctaagat aggaacgatt gcatatgacc
      181 aatttgaacc acctttacca gctattggta aaatcgcatg tgcaattctc ggacctaaat
      241 cacgtgctgg gttgattgca taaccagtag caccgcctaa acttaatccg attgcaacaa
      301 ttaatgctcc gacaattaaa ggatttaaac catcggcaat tttgtttaca ccgataaata
      361 aaatacctaa agttaatgcc attgttccga taatctcact taaaaagttg gcaaagtaat
      421 tcttaatagc cggtgctgta gagaaaacac ctaatttcgc gccagcttct tctgtcgctt
      481 tccaatgtgg caagtacatt aaccatacaa ttgttgctcc gacaattgca cctaacattt
      541 gagcaacaat ataaccagga actaatgacc aatcaaaact tccgtctaat gcaagagcta
      601 aagacaccgc tgggtttaaa tgtgcacctg agaattgacc gacagcaaac acacccattg
      661 taaccgctaa tccccatcca gctgtgatga caatccaatc agcaccattc gcagcacttc
      721 tctttaaatt gacattggca caaacgccac caccaaaaag gattaagatt gcagttccta
      781 ggaattctgc taaatataca ttcatattaa atgtcctccc aaaaagacaa agagattcct
      841 acactagcag tttggctcgt agaaatctcc cgtctctatt ctatgtatta acttttatta
      901 tatttgttat gatactatcg atatgaaagc gttgtcaatg
//
LOCUS       DAMQWL010000286          934 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.294, whole genome shotgun sequence.
ACCESSION   DAMQWL010000286 DAMQWL010000000
VERSION     DAMQWL010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.294"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(323..754)
                     /locus_tag="PF788_002899"
     CDS             complement(323..754)
                     /locus_tag="PF788_002899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDG6305084.1"
                     /translation="MFKNILLPYDFENDFSAIPDYLEKVTDEDSVVVIYHVVTENDLA
                     ISVKYYNKHKEDIIREKEKKLTPFLRELEKRDIQYKIDVDFGHIKDTILEKITSGDIN
                     NGEFDLVIMSNHRVDLNIKHVLGDVTHKIAKRSSVPVLIVK"
BASE COUNT          306 a          142 c           97 g          389 t
ORIGIN      
        1 gctacagtga taacatcctt gttaaattgt ttatatctga aatagttcat acagaagact
       61 cctttttgtt aaaattatac tatagattca actttgcaac agaacctata ttttgctata
      121 attattaaat taattgcctt tgtgttagta ttccctggat tactaacact ttggttagct
      181 gttctaagtg atacaggtgc agcaatatta gttatattaa attcattacg tttattaaaa
      241 aaataaaaaa gcctaaatac tctctcgatt tgtgagaaag tatttaggct ttttgaatta
      301 ataaatttct tacttcttat gtttatttaa caattagtac tgggacagaa cttcttttag
      361 caatcttatg tgtaacatct cctaaaacat gtttaatatt caaatcgact ctatgattac
      421 tcataattac taaatcaaat tcaccattat ttatatctcc agaagtaatt ttttctaaga
      481 ttgtatcttt aatatgccca aaatctacat ctattttata ttgaatatct cttttttcta
      541 attcacgtaa aaatggagtg agttttttct ctttttctct aataatatct tctttatgct
      601 tattataata cttgacacta attgcaagat cattttctgt tacaacgtga taaattacaa
      661 caactgaatc ttcatcggtg actttttcta aatagtcagg gatagcacta aaatcatttt
      721 cgaaatcata gggtaataat atatttttga acatctacac cagcctccta ttacttatta
      781 tttagatgtc tattacttat atatacccta aatatgtatg cttattctca tattcaaatt
      841 attcaaatat attccttatc atgtattaga ttctattttt tatattattt ttgtaattct
      901 ttgtataaac ctatttattt ataaagcgct ctaa
//
LOCUS       DAMQWL010000287          932 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.295, whole genome shotgun sequence.
ACCESSION   DAMQWL010000287 DAMQWL010000000
VERSION     DAMQWL010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.295"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(235..879)
                     /locus_tag="PF788_002900"
     CDS             complement(235..879)
                     /locus_tag="PF788_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HDG6305085.1"
                     /translation="MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLP
                     LSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDI
                     FYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTI
                     ITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR"
BASE COUNT          354 a          143 c          117 g          318 t
ORIGIN      
        1 gcaagtacac ctgtttaaag tttatcttct aagatttgtt tactttagaa ctatagcagt
       61 taatcatttc aatgattaat aatatcttta caattaaggt aatatatttt tattgcttta
      121 tcagtaaaat ctcagtctaa gtttctaact tatgacaatc gctccagttt aaggttgata
      181 ttcattattg attattccaa aactttatac aaatttcttt attaatttaa ctgtttatct
      241 tctgaacata ttagcaaggt aaagtatatc cttaataata ttcaacaaat taataaatag
      301 attaaatccc atttctcttg gtgaatagtc acctcttttt aaacgattaa aatcatacaa
      361 agtataaagt agaaataaca acagactaac gacggtaata atagtgtaaa aaataggatt
      421 ttgaagaaaa ataccaatta gactcgcaat aattaatgtt attaatgtaa cgaataaata
      481 tttgcctata ctcgatgcat ctccaacgaa gaaataacca ataataccaa atgctataaa
      541 tgcaaaaatt gctaatgcga tatttttata gaaaatatct ggtcctaaat tttgtaaata
      601 cgtggtaaac gttgcgtatg acaataagcc aatcactaca gcgtaaatat gtgaaataat
      661 taaaccgaac cgtctcgctc tttcaaaaac aagtgttgct aaaataataa tcagtaatcc
      721 aaatgacaag ggttgtcgcc aacttaatgg taaaaactga cctagatagc atcctatgcc
      781 aaatataatc caataataca taaaataaag ccacacttta cttattgatt gagcatgctg
      841 gttttgatga taatatgaat gatttgtatt ttgcgacaaa ataattcctc cttctaccgt
      901 cgttttatgc gtcaaatttt acagtaaatt tt
//
LOCUS       DAMQWL010000288          900 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.296, whole genome shotgun sequence.
ACCESSION   DAMQWL010000288 DAMQWL010000000
VERSION     DAMQWL010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.296"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..741
                     /gene="sarS"
                     /locus_tag="PF788_002901"
     CDS             <1..741
                     /gene="sarS"
                     /locus_tag="PF788_002901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator SarS"
                     /protein_id="HDG6305086.1"
                     /translation="NHDKIRDFIIIEAYMFRFKKKVKPEVDMTIKEFILLTYLFHQQE
                     NTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAE
                     RVTLFDQIIKQFNLADQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVEFTIL
                     AIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDD
                     AQQDHAEQLLAQVNQLLADKDHLHLVFE"
BASE COUNT          355 a          143 c          112 g          290 t
ORIGIN      
        1 aaccatgaca aaattagaga ttttataatc attgaagcat atatgtttcg ttttaagaaa
       61 aaagtcaagc ctgaagtcga tatgactata aaagaattta tattactgac ttatttattt
      121 catcaacaag aaaacacact tccatttaag aagattgttt cagatttatg ttataaacaa
      181 tcggatttag tacagcatat aaaagtactt gtgaaacatt catatattag taaagttcga
      241 agtaaaattg atgagcgtaa tacttacatt tcaatatctg aagaacaacg agagaaaatt
      301 gcagaacgtg ttacattgtt tgatcaaatc attaaacaat ttaaccttgc agatcaaagt
      361 gaatcacaga tgataccaaa agatagtaaa gaatttctaa acttgatgat gtatacaatg
      421 tatttcaaga atattatcaa aaaacatcta acattaagtt ttgtagaatt cacaattcta
      481 gctattatca cttctcaaaa taaaaacatc gttcttctta aagatttaat tgaaacaatc
      541 caccataaat accctcaaac tgttagagct ctcaataatt taaaaaagca aggctatcta
      601 ataaaagaac gctcaactga agatgaaaga aaaattttaa ttcatatgga tgacgcgcag
      661 caagaccatg ctgaacaatt attagctcaa gtgaatcaat tattagcaga taaagatcat
      721 ttacatcttg tttttgaata atatctctat tacgcaagtg tgctgtattc taaagtgcac
      781 ttgtgttttc tattttttaa taaaacctca gcacataatg aacaactttc tattttctat
      841 atcacttaaa accatttccg aaattaaacc tcagcacatt caaagcccca ctttattctt
//
LOCUS       DAMQWL010000289          895 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.297, whole genome shotgun sequence.
ACCESSION   DAMQWL010000289 DAMQWL010000000
VERSION     DAMQWL010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.297"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(137..328)
                     /locus_tag="PF788_002902"
     CDS             complement(137..328)
                     /locus_tag="PF788_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000291518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305087.1"
                     /translation="MYYLAYGLTTLDNCFKYYQLITQNEHFCYSQQEERESYQQKFQS
                     MINGLKIKIGIQSSNDDAQ"
     gene            complement(425..>895)
                     /locus_tag="PF788_002903"
     CDS             complement(425..>895)
                     /locus_tag="PF788_002903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDG6305088.1"
                     /translation="NDISLTFKQMADMATRIKKNIYYVGNHEAFVQAKGSAHFEFSKR
                     IKQNYSYRCAITGIKTKDFLVVTHIIPWHENEFIRLDPSNGICLSLFLAKAFKKGFIT
                     FSNSYRVVLSKEAEKDAALYEELKIYENQKIELPDCQKPNLKYLDWHREHIFKN"
BASE COUNT          301 a          149 c           95 g          350 t
ORIGIN      
        1 atttttctta atgacatatt taatcacatt atacgttcta gccatttact aatcttcctc
       61 cattaagata ttaattcgaa gctctttctt cttttaaaaa catataacgt tcaattaaaa
      121 aatcaaactt tgtagcttat tgcgcatcat catttgaact ttgtatgcca attttaattt
      181 ttaaaccatt aatcatactt tgaaattttt gctgataact ttctctttct tcttgttgag
      241 aatagcaaaa atgttcattt tgtgtaatta attggtaata tttaaaacaa ttatctaaag
      301 ttgttaatcc ataggctaaa taatacaaat tatctgtttc aagtgctctt tttcaatcta
      361 ctaatgaaag atgtatggca cctctactaa ttgactaata tctgtcatac aacctctccc
      421 aaaattaatt tttaaaaata tgttctctat gccaatctaa atatttcaaa ttaggtttct
      481 gacaatctgg tagttcgatt ttttgatttt cataaatctt taattcttca tataaagcag
      541 catctttctc tgcttcttta gataaaacaa ctctataact gttagaaaaa gtgataaagc
      601 ctttcttaaa tgcttttgct aaaaataaag acaaacaaat accatttgaa ggatctagtc
      661 taataaactc attttcatgc caaggaataa tatgtgtaac gactaaaaag tctttagttt
      721 taatcccggt aattgcacat ctataactat aattttgttt aatccttttt gaaaactcaa
      781 aatgagcact tcccttagct tgaacaaatg cttcatgatt ccctacgtag taaatatttt
      841 tctttattcg agttgccata tcagccattt gtttaaaagt tagcgaaata tcatt
//
LOCUS       DAMQWL010000290          892 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.298, whole genome shotgun sequence.
ACCESSION   DAMQWL010000290 DAMQWL010000000
VERSION     DAMQWL010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.298"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..223
                     /locus_tag="PF788_002904"
     CDS             <1..223
                     /locus_tag="PF788_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR01741 family protein"
                     /protein_id="HDG6305089.1"
                     /translation="LEPWTSCEFDFTRDGKLNVSFDYIDWVNSEFGPMGREHYYMYKK
                     FGIWPEKEYAINWVEKIKDYVKEQDEAEL"
     gene            234..734
                     /locus_tag="PF788_002905"
     CDS             234..734
                     /locus_tag="PF788_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin YezG family protein"
                     /protein_id="HDG6305090.1"
                     /translation="MTFEGKLSQMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIF
                     NYTKPDSDELNYYSDIPKDCNVSKDIFKNSWFKVYRMFDELRETFKEEGLEPWTSCEF
                     DFTRDGKLNVSFDYIDWINTEFDQLGRQNYYMYKKFGVIPEMEYEMEEVKEIEQYIKE
                     QEEAEQ"
     gene            745..>892
                     /locus_tag="PF788_002906"
     CDS             745..>892
                     /locus_tag="PF788_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF600 family protein"
                     /protein_id="HDG6305091.1"
                     /translation="MTFEEKISKLYNEIANEISSMIPVEWEKVYTMAYIDDGGGEVFF
                     NYTKP"
BASE COUNT          353 a           88 c          193 g          258 t
ORIGIN      
        1 gcttgaacca tggacatcat gcgaatttga ctttacaaga gatggcaaat tgaatgtatc
       61 ttttgattat attgattggg tgaattcaga atttggacca atgggaagag aacattatta
      121 tatgtataaa aaatttggaa tttggcctga aaaagaatat gccataaatt gggttgaaaa
      181 aataaaagat tatgttaaag agcaagatga agctgaacta taggggagat aatatgactt
      241 tcgaaggaaa actaagtcaa atgtacaacg agattgcgaa tgagattagt gggatgatac
      301 cggtagaatg ggagcaagta tttacaatag cttatgtaac tgatcaagct ggagaagtca
      361 tctttaatta tactaaacca gatagtgatg aattaaatta ttattcagac atacctaaag
      421 attgcaatgt ctcaaaagat atttttaaga attcatggtt taaagtttat cgaatgtttg
      481 atgagttaag agaaactttt aaagaagaag ggcttgaacc atggacatca tgcgaatttg
      541 actttacaag agatggcaaa ttgaatgtat cttttgatta tatagattgg ataaatacag
      601 agtttgatca attgggccgt caaaattatt atatgtacaa aaaatttggg gttataccag
      661 aaatggaata tgaaatggaa gaagttaaag aaatcgaaca atatattaaa gagcaagaag
      721 aagctgaaca atagaggtga taacatgact ttcgaagaga aaataagcaa attatataat
      781 gagattgcga atgagattag cagtatgata ccggtagagt gggaaaaagt atatacaatg
      841 gcttatatag atgatggagg aggtgaagta ttctttaatt atactaaacc ag
//
LOCUS       DAMQWL010000291          876 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.299, whole genome shotgun sequence.
ACCESSION   DAMQWL010000291 DAMQWL010000000
VERSION     DAMQWL010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.299"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..390
                     /locus_tag="PF788_002907"
     CDS             <1..390
                     /locus_tag="PF788_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000769690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAP domain-containing protein"
                     /protein_id="HDG6305092.1"
                     /translation="IATTGATVAGNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMA
                     FNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEV
                     DLKKDSYTANLFDSNSIKQIDINVKTK"
     gene            complement(647..832)
                     /locus_tag="PF788_002908"
     CDS             complement(647..832)
                     /locus_tag="PF788_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjzD family protein"
                     /protein_id="HDG6305093.1"
                     /translation="MKHLVTFFWALLLMQMVNFVLNSLVGGDSLNVVNPIIMAVLFTI
                     FTAIFAAVIKPPKDSSQ"
BASE COUNT          332 a          132 c          140 g          272 t
ORIGIN      
        1 atcgcaacga ctggcgctac tgtggcaggt aatgaggtat ctgcagcaga aaaggacaaa
       61 ctaccggcaa ctcaaaaagc taaagaaatg caaaatgttc catatacaat tgcagtagat
      121 ggcattatgg ctttcaatca atcttactta aatttaccaa aagatagcca attatcatat
      181 ttagatttag gaaataaagt taaagctttg ttatatgatg aacgcggtgt aacacctgag
      241 aagattcgaa atgcaaaatc tgccgtttac acgattactt ggaaagatgg tagtaaaaaa
      301 gaagtggatc ttaagaaaga tagctacaca gcaaacttgt ttgattcaaa ttcaattaaa
      361 caaattgata ttaatgtaaa aactaaataa acacttaaaa ttatcaaatt caacatgaag
      421 catttaattt tacagtgatg attataaaat aattgccttg atacaaagat tactcgtaaa
      481 tgacatcttt gtattaaggc tttttctaaa tttaaaagtg atgggttaga ggtcattgag
      541 ctttaaaata ttcaaaatac aaaacattaa tggccaaaaa taaaagccgc ctttatctgg
      601 gcagcttcaa taataagaaa gacatatttc attttatact aaatagttat tgtgatgaat
      661 ctttcggcgg tttaattact gcagcaaaaa ttgctgtgaa aatcgtgaac aatactgcca
      721 tgataattgg attcactaca tttaagctgt ctccacctac taggctatta agtacaaagt
      781 taaccatttg cattaataat aatgcccaaa agaatgttac gaggtgtttc atgtcattct
      841 acctccactt taattatata tattttattt taagtg
//
LOCUS       DAMQWL010000292          840 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.300, whole genome shotgun sequence.
ACCESSION   DAMQWL010000292 DAMQWL010000000
VERSION     DAMQWL010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.300"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            200..>840
                     /locus_tag="PF788_002909"
     CDS             200..>840
                     /locus_tag="PF788_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superantigen-like protein SSL14"
                     /protein_id="HDG6305094.1"
                     /translation="MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISEN
                     ETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQL
                     RNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGH
                     EFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLS"
BASE COUNT          317 a          123 c          130 g          270 t
ORIGIN      
        1 taacgtatcg tttttaatat ataactcccg cctactttat tagatactgt ttctgtccaa
       61 aacttaaaaa tgataagttt tgcttaaata acactactaa ctgtttaagt ttatttaaca
      121 tagttttagc ttttatttaa ttccgaatcg gtgtaatagc ttatatactt tgggtaattc
      181 acgcaaagga gattttcata tgaaaaagaa catcatgaat aaattagttt tatcaacagc
      241 attgttactt ttagaaacta catcaacaca acttcctaaa acaccaatca gtttttcatc
      301 tgaagcaaaa gcctataata tcagtgaaaa cgagactaat atcaatgaac taatcaaata
      361 ttacactcag ccgcattttt cattatctgg aaaatggtta tggcaaaagc ccaatggtag
      421 cattcatgca acattgcaaa cgtgggtttg gtatagtcat attcaagtgt ttggatccga
      481 gagttgggga aacattaatc agttaagaaa taaatacgtt gatatatttg gaactaaaga
      541 tgaggacaca gttgaaggtt actggactta tgatgaaaca tttactggtg gtgttacgcc
      601 agcagctact tcatctgata agccttatag actattttta aaatatagtg ataaacaaca
      661 aactatcatc ggtggacatg aattttacaa aggaaataaa ccagtattaa ctttaaaaga
      721 attagatttc cgtattcgtc aaacattaat aaaaaataaa aagttatata acggagaatt
      781 taataaaggt caaattaaga taactgctga tggaaataat tacacgattg atttaagtaa
//
LOCUS       DAMQWL010000293          834 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.301, whole genome shotgun sequence.
ACCESSION   DAMQWL010000293 DAMQWL010000000
VERSION     DAMQWL010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.301"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..>834
                     /locus_tag="PF788_002910"
     CDS             <1..>834
                     /locus_tag="PF788_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDG6305095.1"
                     /translation="FLGQFFTKNEDPWHQILNDLEVTNSVDNFLRSISNKAKETKKRA
                     FIIIDALNEGEGKRLWGNYFQSFINHIKKYSNIALIFSIRTPFEDVILPKNAIQDNNI
                     VVFQHEGFSKEENYNPIVSFCDFYGLELPKLPILNPEFNNPLFLKLMCEYCVNKFKEF
                     DQTISVAELFTNVLKTVNINLSKEDKFDFDKNINVVQKVIKGLVELMNDSEFNQLNYE
                     ESYTVVNNIAKEYVQKSNRFLEALIDENILIKNTGYKGEMIIYFSYERMGDYFLSEYL
                     LE"
BASE COUNT          328 a           85 c          129 g          292 t
ORIGIN      
        1 tttttgggac aattttttac taaaaatgaa gatccatggc atcaaatact taatgattta
       61 gaagttacaa attctgttga taatttttta aggtcaataa gtaataaggc caaagaaaca
      121 aaaaaaagag cttttattat tattgatgcg cttaatgaag gtgaaggtaa aaggttatgg
      181 ggaaattatt ttcaaagctt tatcaaccat ataaagaagt attctaatat agctttaata
      241 ttttctatta gaaccccttt tgaagatgtt atattaccca aaaacgcaat acaagataac
      301 aatattgtag tatttcagca tgaaggtttt agtaaggaag aaaactataa tccaattgta
      361 tctttttgtg atttttatgg attagagcta cctaagttac ctatattaaa tccagaattc
      421 aacaatccat tatttttaaa actaatgtgt gagtactgtg taaataaatt taaggaattt
      481 gaccaaacta taagtgttgc agagctattt acaaatgttc ttaagacagt aaatattaat
      541 ttatctaagg aagataaatt tgattttgat aaaaatatta atgttgtaca aaaagtaata
      601 aaaggattag ttgaattaat gaacgactca gaatttaatc aactaaatta tgaggaatcc
      661 tatactgttg ttaataatat agctaaagag tatgttcaaa agtcaaatag atttttagaa
      721 gcgctaatag atgaaaatat attaattaaa aatactggct ataaaggtga aatgattatt
      781 tatttttcgt atgagcgtat gggagattac tttttatcag aatacctttt agag
//
LOCUS       DAMQWL010000294          819 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.302, whole genome shotgun sequence.
ACCESSION   DAMQWL010000294 DAMQWL010000000
VERSION     DAMQWL010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.302"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            122..661
                     /locus_tag="PF788_002911"
     CDS             122..661
                     /locus_tag="PF788_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305096.1"
                     /translation="MVAYASHLSFLLFSNKKVLKINAYTGTDMAKLDLNSLDDEHVKL
                     LINELKYPETHIDVNELKTIVASRINERQEIISFKLGIKYLLTIKRGNIEKDRFSISI
                     IFKDTYHTLVRIDINGGTHDNPDGTIAPKSHIHIYNDKYDKKDRFAYEINLKDFPDIY
                     NLYNVYMSFLEYNNIKDLE"
     gene            674..>819
                     /locus_tag="PF788_002912"
     CDS             674..>819
                     /locus_tag="PF788_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305097.1"
                     /translation="MTTFDAKKLKKEYLDWYNQTLEFSNLSNNVVRIDTPFKDNSLDN
                     LIIYA"
BASE COUNT          329 a          100 c          117 g          273 t
ORIGIN      
        1 ttatttttca atacttaatt ttaaaaatcc cctatgaaaa tgttgatgag ctacatcttt
       61 aaatcttatt atacattgta taaaattata ttgcgaggta gtaaattgat attatacact
      121 tttggttgcg tatgcatctc acctatcttt tttgcttttt tcaaataaga aagtattaaa
      181 aattaatgcc tatacaggaa cagacatggc taaacttgat ttaaatagtc ttgacgacga
      241 gcacgtaaaa ttattaataa atgaattaaa atatccagaa actcatatcg atgtaaatga
      301 attaaaaaca atagttgcta gtcgaataaa tgaaaggcaa gaaataataa gttttaagtt
      361 aggaataaag tacttattaa caataaaaag agggaacata gaaaaagata ggttttcaat
      421 ttcaatcatt ttcaaagata cctatcacac cctagttaga atagatatta acggtggtac
      481 tcacgataat ccagatggaa caatcgctcc gaaaagtcat attcacatat ataatgataa
      541 gtatgataaa aaggataggt ttgcttatga aattaacttg aaagatttcc ccgacatcta
      601 taacttgtat aatgtgtata tgtcgttttt agagtataat aatataaaag accttgaata
      661 aaggagggat aatatgacta catttgatgc taaaaaatta aaaaaagaat atcttgattg
      721 gtataatcag accttagagt tttctaattt atcaaacaat gtagtaagaa tagatactcc
      781 ttttaaagat aattctttag ataatttaat aatttacgc
//
LOCUS       DAMQWL010000295          805 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.303, whole genome shotgun sequence.
ACCESSION   DAMQWL010000295 DAMQWL010000000
VERSION     DAMQWL010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.303"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            17..127
                     /locus_tag="PF788_002913"
     CDS             17..127
                     /locus_tag="PF788_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305098.1"
                     /translation="MKMTIKVRKTNKKEKIEFLIGTFIIILVILGFKIMK"
     gene            555..740
                     /locus_tag="PF788_002914"
     CDS             555..740
                     /locus_tag="PF788_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305099.1"
                     /translation="MSEYKKKIIELIESNLTGYEISKKTGVSQYVLSQLRQGKREVDN
                     LTLNTTEKLYEYANKVL"
BASE COUNT          368 a           77 c          117 g          243 t
ORIGIN      
        1 tctcaccatt agtaaaatga agatgactat taaagtgcga aaaacaaata aaaaagagaa
       61 aatagaattt ttaataggga cgtttataat tattttagta atattagggt tcaaaattat
      121 gaaataaatg tatagtattt gagaagtcta tatgactccg gaaaaattaa attctaaaga
      181 tatctcaata tctcaaattt aatagactac tggagttagt agtttgaata ttgaaagaca
      241 ctaatctaat aaaaatacat aaaaggttaa actttagaag tggctgtaaa cttcaatgaa
      301 tactaaacat tgaagttttg taaaaggcgt aaggtataca agacaaatcg tttatctttg
      361 acaaagtaat tgatgatgaa aagtcgttaa tatgtagaaa caaaaattga aaatataaaa
      421 tttaactatt atgaagtgat gatagccatt aatgaataga aaaataataa aatcatttat
      481 agataaaaaa tacgttaagt tcacagaatt tcgaaaaaaa gcagaaaaca ttgtacagat
      541 atggagatga aaaaatgtca gaatacaaga aaaaaataat tgaattaatt gaaagtaatt
      601 taacaggata tgaaatttct aaaaaaactg gagtttctca atacgtactt tcacaattaa
      661 gacagggcaa acgcgaagta gataatctaa ccctgaatac aacagaaaaa ttatatgaat
      721 atgccaataa agttttgtaa tttaactaat gtataaatta atcaagctat gtttatttga
      781 tttaactatt aataaaaatc atatg
//
LOCUS       DAMQWL010000296          798 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.304, whole genome shotgun sequence.
ACCESSION   DAMQWL010000296 DAMQWL010000000
VERSION     DAMQWL010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.304"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            148..252
                     /locus_tag="PF788_002915"
     CDS             148..252
                     /locus_tag="PF788_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305100.1"
                     /translation="MFKVNYSILSYYPEYNIAVSWQRLREGKTIKNKI"
     gene            381..632
                     /locus_tag="PF788_002916"
     CDS             381..632
                     /locus_tag="PF788_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305101.1"
                     /translation="MLTLIKLKEDEQVIIYEYIPEDDISNGKGSVTFNKKDAEVIDFS
                     LSEIENEEYFMLYRNKSFSVVRDFIEKQEFPENYKIAWY"
BASE COUNT          321 a           93 c          127 g          257 t
ORIGIN      
        1 ctcaaatgta ccaaattgtt aatcttaata aatctctact ttataaagat tgaatggaca
       61 ttcgagcgtt aatcagtcag gagggacttt ccctcctaca atttaataat aatacttgct
      121 tcaccactat acaaggagtg agttgttatg ttcaaagtga attattcgat tttaagttat
      181 tatccagaat ataatatcgc agtaagttgg caacgtttaa gagaaggaaa aacaataaaa
      241 aacaagattt aatactgctg cgtcatgagg cgcttgaaca ttatttgatg aataagtata
      301 atttcaacta tgattatgca cataaaattg tatcaaaaaa atacgattat tcaattttta
      361 taaaaaagaa ggtggattaa atgcttacat taataaaatt gaaagaagat gaacaggtta
      421 taatatatga atatatacct gaagatgata taagtaacgg taaaggttca gtaactttta
      481 ataaaaaaga tgcagaggtt atagatttct cattatctga aatagaaaat gaagaatatt
      541 ttatgttata tcgtaataag tctttttctg tagtaagaga ctttatcgag aagcaagaat
      601 ttcccgaaaa ttataaaata gcatggtatt aaagcatcct ttctacacag ataaagagaa
      661 agcgatgcta tttttatatg cttttttcat tattcgttga aaaagaagag tcacaaaagt
      721 taacatattt aaaagaactt ggtgaagatg gcgaatataa atatgttgcc aaaatagata
      781 gtaaaacatc taaattat
//
LOCUS       DAMQWL010000297          791 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.305, whole genome shotgun sequence.
ACCESSION   DAMQWL010000297 DAMQWL010000000
VERSION     DAMQWL010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.305"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..>791
                     /locus_tag="PF788_002917"
     CDS             <1..>791
                     /locus_tag="PF788_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDG6305102.1"
                     /translation="KFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITI
                     SILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQ
                     HMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKI
                     TTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINP
                     NISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKV"
BASE COUNT          273 a          113 c          110 g          295 t
ORIGIN      
        1 caaaatttgg tataggcaaa ggtttatttt taagcttatt cacatcagta tcagctttta
       61 ataatgctgg atttgccctt tttaagaata acttaataga ttattctagt gatccaattg
      121 tcattattac aatctcaata ctcataatat ttggaggtat tggacatttt gtcgtgatag
      181 actttattaa ttgtaaaaaa ttgagtaaat tatctttaca ttctaaatta gtcttaacta
      241 caactagtat cctaataatt ataggagcta ttacattctt tttattagaa cagtttaata
      301 ctatgcaaca tatgggacta gttgaaaaaa tcggaaattc ttttttccaa tcagtaacaa
      361 cacgaacagc gggttttaac agtatagata tagcaagcat taacaaatct accgcattaa
      421 tgttaatgct acttatgttt attggtggtg cccctctcag tgcagctgga ggaattaaaa
      481 taactacttt tgcagttgcg tttatttttg tactaaatta tatacgtaaa gaaaataatg
      541 tttcagtatt caataaagaa atatctgaca aacatataaa actatctatt gttaccatta
      601 atatctcatt tctatttatc agcatcatta cttttatatt atcgataatt aatccgaaca
      661 tatcattaat caagttatta ttcgaagtgg tttctgcatt cggaacagta gggttaagta
      721 tgaaccttac cacagaatat catggtatta ctaaaataat tattatattc gttatgcttt
      781 gcggtaaagt a
//
LOCUS       DAMQWL010000298          789 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.306, whole genome shotgun sequence.
ACCESSION   DAMQWL010000298 DAMQWL010000000
VERSION     DAMQWL010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.306"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..229
                     /locus_tag="PF788_002918"
     CDS             <1..229
                     /locus_tag="PF788_002918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000905716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305103.1"
                     /translation="MKRDFFEKWSFILNLILFCAFLFLVVLMFYKDVDLIYIFCTLLI
                     SLLPLLNIIKRIGWEINQSSMIYEVILAVID"
     gene            533..789
                     /gene="tnpA"
                     /locus_tag="PF788_002919"
                     /pseudo
     CDS             533..789
                     /gene="tnpA"
                     /locus_tag="PF788_002919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002458050.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
BASE COUNT          280 a          109 c          149 g          251 t
ORIGIN      
        1 tatgaaaaga gatttttttg aaaagtggtc gtttatttta aatttaattt tattttgtgc
       61 ttttttgttt ttagtggttc tgatgtttta taaggatgtc gatttgattt atattttttg
      121 tacattatta atatcattat tacctttgct aaatattata aaaagaatag gctgggaaat
      181 aaatcaatct tctatgatct acgaagttat attggcagta attgactgaa cgaaaatgcg
      241 cttgtaataa gcttttttca attctagtca ggggccccaa cacagagaat ttcgaaaaga
      301 aattctacag gcaatgcgag ttggggcggg gccccaacaa agagaaattg gattcccaat
      361 ttctacagac aatgcaagtt ggggtgggac ggcgaaataa attttgcgaa aatatcattt
      421 ctgtcccact ccccagaaaa ggttctacca ttgtcaaaaa aatgcatctc tacatgttag
      481 agtaaatatt ggtcagccaa ccaaaataat caacacgagg agatgctatt taatgtcatc
      541 tgacacaaac agtttagcac atacgaaatg gaattgtaag taacatattg tctttgcacc
      601 taaatacaga agacaagcga tatatggaaa aataaaaaaa gatataggga ttatattacg
      661 tcaattatat gaaagaaaag gtgtagagat aattgaagca gaggtatgta aagatcatat
      721 ccatatgtta gttagtatac cacccaaact tggggtatca tcatttgttg gctatttaaa
      781 aggaaaagt
//
LOCUS       DAMQWL010000299          788 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.307, whole genome shotgun sequence.
ACCESSION   DAMQWL010000299 DAMQWL010000000
VERSION     DAMQWL010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.307"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            230..412
                     /locus_tag="PF788_002920"
     CDS             230..412
                     /locus_tag="PF788_002920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000694772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305104.1"
                     /translation="MKITNCKIKRETVIYEVLTSGNQPFTYELPKDLSSHNARKYLEF
                     ISQKIDGDKLTKEDSL"
     gene            490..>788
                     /locus_tag="PF788_002921"
     CDS             490..>788
                     /locus_tag="PF788_002921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015973974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDG6305105.1"
                     /translation="MTHNIEKRINKLKTSGNPKFKKLDSDIHYLLKRFEGEKNHKGFY
                     PKFKQGEIVFVDFGINVNKEFSNSHFAIVMNKNDSNTEDIVNVIPLSSKENKKYL"
BASE COUNT          332 a           94 c          115 g          247 t
ORIGIN      
        1 actacgaagt tagtactaaa gaataaacca atccattatt tcataatact aaccttaaat
       61 ttacagaggt tttaattatg aaacatgaaa aaagcaatct taactttaag tcttatattt
      121 attacctact acctcacttt taaatatatg tggattaaag aattgaagta ttaattatgc
      181 ttatttaaaa aagacgtcta tttcagcagt gtttgaaagg aagtttataa tgaaaataac
      241 taattgcaaa ataaaaagag aaactgtaat atacgaagtt ttaactagtg gtaatcaacc
      301 attcacttat gagttaccta aagatttatc gtcacataat gcgcgtaaat acttggaatt
      361 tatttcacaa aaaatagatg gcgataagtt aaccaaagaa gattcattat gattttacta
      421 atcaaaaaac gtctacaagt gtagacgttg aatggtggtg agagtgtgag cgagaataaa
      481 ggagaaatga tgacgcataa tatagaaaaa cgcattaata aattaaaaac ttctggaaat
      541 ccaaaattta aaaaattaga ttcagatatt cactatttac tcaagagatt tgaaggtgaa
      601 aaaaaccata aaggttttta tccaaagttt aaacaaggag aaatagtttt tgtagatttc
      661 ggtataaacg ttaataaaga attctctaat tcacactttg caatagtgat gaataaaaat
      721 gattctaata cggaagatat agtaaatgtt attcccttat cttctaaaga aaacaaaaag
      781 tatttaaa
//
LOCUS       DAMQWL010000300          779 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.308, whole genome shotgun sequence.
ACCESSION   DAMQWL010000300 DAMQWL010000000
VERSION     DAMQWL010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.308"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            1..512
                     /locus_tag="PF788_002922"
                     /pseudo
     CDS             1..512
                     /locus_tag="PF788_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499232.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            658..>779
                     /gene="sarX"
                     /locus_tag="PF788_002923"
     CDS             658..>779
                     /gene="sarX"
                     /locus_tag="PF788_002923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001090984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator SarX"
                     /protein_id="HDG6305106.1"
                     /translation="MNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLT"
BASE COUNT          311 a           83 c          120 g          265 t
ORIGIN      
        1 tttgatggct ttggattaaa catttttgac aatcatcaag catttaatgc gatgcatcta
       61 tatgacaaaa atggatttaa aacaacacta ggtcttatat tagaaaagtt tatcgaatat
      121 gtctcgaaac caaaatacga aaacagttat tattctattt ttgatataga gaattattat
      181 tgtcttgtta tttatgattg gcgagtgata gagagcgaga caattatgag taattttgag
      241 gatagtcaag tttatataaa ttttaaaaac aatgttttaa acgataaata tctaattgta
      301 atagaaacat tggacaaaat agtggcaaca ttaatcattt gatttctaaa gaattaagag
      361 ataaatatga atggaaccct agtttactat ctaaaattga caactacctt aaaccagcaa
      421 tagagattaa agagcataat tttagtgata attccttgaa tattaacgtt acttttaatg
      481 cgttatacat aattaaaata ggaaaaaaat aacaccttga tatgtattgc aaaatttaat
      541 ttgcatttgt tggtaatttt gacaacgtat taaaaacaaa tgagaaagac aatggctgaa
      601 aaatttaaga taataatgac agaagcattg tctttatata tttgggggtg caacattttg
      661 aatactgaga aattagaaac attgcttggc ttctataaac aatataaagc attatctgaa
      721 tatattgata aaaaatataa gttgtcgcta aatgatttag cagtcttaga tttaacgat
//
LOCUS       DAMQWL010000301          733 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.309, whole genome shotgun sequence.
ACCESSION   DAMQWL010000301 DAMQWL010000000
VERSION     DAMQWL010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.309"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..169
                     /locus_tag="PF788_002924"
     CDS             <1..169
                     /locus_tag="PF788_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF443 family protein"
                     /protein_id="HDG6305107.1"
                     /translation="GLSIMALSMLLTLNPQNIIGFIGWLVMTAGFFLLNMSSIIDKKI
                     YVLSKTNTVEK"
     gene            135..380
                     /locus_tag="PF788_002925"
     CDS             135..380
                     /locus_tag="PF788_002925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305108.1"
                     /translation="MYYLKLTRWKNDGLAGFTAGSISAILVYWTNQKNEFGIKDKNDW
                     IGHKLDVGIDAVEKSAEKTVDGVENVMVKLQKVFLII"
     gene            404..>733
                     /locus_tag="PF788_002926"
     CDS             404..>733
                     /locus_tag="PF788_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF443 family protein"
                     /protein_id="HDG6305109.1"
                     /translation="MLLCESKIINKNPKYRIIKYNDEYLMVDIISTWISLFFPFINWF
                     IPKEYVKISREEFENLNIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDIQLDKKLVI
                     AICCITFI"
BASE COUNT          269 a           92 c          128 g          244 t
ORIGIN      
        1 cggtctttca ataatggctc taagtatgtt attaacttta aatcctcaaa atataatagg
       61 ctttattggt tggttggtaa tgactgcagg tttctttctg ttaaacatgt catcgattat
      121 tgacaaaaaa atttatgtat tatctaaaac taacacggtg gaaaaatgat ggtttagctg
      181 gatttactgc aggttctatt tcggcaatac ttgtatattg gaccaatcaa aaaaatgaat
      241 ttggaataaa agataaaaac gattggatag gacataaact agacgttggt atagatgctg
      301 tagaaaaatc tgcagaaaaa acagtagatg gtgttgaaaa tgtcatggtg aagcttcaaa
      361 aagtatttct aatcatataa gccctaagaa atggagctgg taaatgttgc tatgcgaatc
      421 taaaatcatc aataaaaacc caaaatatag aattattaaa tataatgatg aatacttaat
      481 ggtcgatata ataagcactt ggattagttt attttttcct tttattaatt ggttcatccc
      541 aaaagaatac gtcaaaatta gtagagaaga gtttgaaaac ttaaatattg ttaaacctgc
      601 taaaaagaat gttttttggc cagttgcagg tagctctgct ttgctgggag ttgcattaag
      661 aaaatataca catttacttg acattcaact tgataaaaaa ttagttattg ccatatgttg
      721 catcacattt ata
//
LOCUS       DAMQWL010000302          728 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.310, whole genome shotgun sequence.
ACCESSION   DAMQWL010000302 DAMQWL010000000
VERSION     DAMQWL010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.310"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..>728)
                     /locus_tag="PF788_002927"
     rRNA            complement(<1..>728)
                     /locus_tag="PF788_002927"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          149 a          221 c          158 g          200 t
ORIGIN      
        1 aaggatgtca agatttggta aggttcttcg cgttgcttcg aattaaacca catgctccac
       61 cgcttgtgcg ggtccccgtc aattcctttg agtttcaacc ttgcggtcgt actccccagg
      121 cggagtgctt aatgcgttag ctgcagcact aaggggcgga aaccccctaa cacttagcac
      181 tcatcgttta cggcgtggac taccagggta tctaatcctg tttgatcccc acgctttcgc
      241 acatcagcgt cagttacaga ccagaaagtc gccttcgcca ctggtgttcc tccatatctc
      301 tgcgcatttc accgctacac atggaattcc actttcctct tctgcactca agttttccag
      361 tttccaatga ccctccacgg ttgagccgtg ggctttcaca tcagacttaa aaaaccgcct
      421 acgcgcgctt tacgcccaat aattccggat aacgcttgcc acctacgtat taccgcggct
      481 gctggcacgt agttagccgt ggctttctga ttaggtaccg tcaagatgtg cacagttact
      541 tacacatatg ttcttcccta ataacagagt tttacgatcc gaagaccttc atcactcacg
      601 cggcgttgct ccgtcaggct ttcgcccatt gcggaagatt ccctactgct gcctcccgta
      661 ggagtctgga ccgtgtctca gttccagtgt ggccgatcac cctctcaggt cggctatgca
      721 tcgttgcc
//
LOCUS       DAMQWL010000303          727 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.311, whole genome shotgun sequence.
ACCESSION   DAMQWL010000303 DAMQWL010000000
VERSION     DAMQWL010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.311"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            16..657
                     /locus_tag="PF788_002928"
     CDS             16..657
                     /locus_tag="PF788_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HDG6305110.1"
                     /translation="MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCI
                     DKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQNTEIVDKLVEIFWPGPLNIILKNKTS
                     YNYMLNNSDSIAIGCVQNKTMRRFISYINSPIAITSANISGTADDILITENEAIKHMG
                     ENVRYMLRSQNKTNYKTSSTIIKVTDNKIELLREGDIKFEEIKERLGTGIIYE"
BASE COUNT          300 a           74 c          113 g          240 t
ORIGIN      
        1 aaaggaggag taaagatgga aattttaaat gattctgtaa aaagttttga aaaactttat
       61 ttacaattac aagatggttt tccagtgatt gttcctactg atactaatta taatttatgt
      121 agtttaccta acaacgatct ttgtatcgat aaaatatttg aatataaaaa gcgatcgaaa
      181 gataagccat tatcattatt tattgataag ccagaggatt ggaaattgta tggagataat
      241 caaaatacgg aaatagttga taaactagtt gaaatatttt ggcctggacc attaaatatt
      301 attttaaaaa ataaaacaag ctataattat atgctcaata attcagatag tatagctata
      361 ggatgtgtac aaaataaaac gatgagaaga tttatttcat atattaattc acctatagca
      421 attacttcag caaatatatc tggaactgcc gatgatattt taataactga aaatgaagca
      481 attaagcaca tgggcgaaaa tgtaagatat atgctaagaa gtcaaaataa aactaactat
      541 aaaacatcta gtacgattat taaagtgaca gataataaaa ttgaattatt aagagaagga
      601 gatataaagt ttgaagaaat aaaagaaaga ctaggtacag gtattattta tgaataagtt
      661 aatacttggg atttatttat accgaatttt ttcacgagca tacttttatt taccgttttt
      721 attaatt
//
LOCUS       DAMQWL010000304          709 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.312, whole genome shotgun sequence.
ACCESSION   DAMQWL010000304 DAMQWL010000000
VERSION     DAMQWL010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.312"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(122..628)
                     /locus_tag="PF788_002929"
     CDS             complement(122..628)
                     /locus_tag="PF788_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305111.1"
                     /translation="MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYI
                     SLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVV
                     LEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIF
                     NYRMRSYK"
BASE COUNT          287 a          114 c           80 g          228 t
ORIGIN      
        1 cagcacttat acactagtca aaaaattcat gcctctactt tttcgaattt caaaaataaa
       61 accacacaac aaaaaagaca ccatttgaat gttggtgtct gaaggtataa tctcatagat
      121 tttatttgta acttctcatt ctatagttaa atattgtgac ccagctaatg attaacgttg
      181 gtagaattac taaattcaaa ttagacacgt caaaaaagac agattggaaa ttgtcgatat
      241 taatatcatt aatgtccatt ttttcattta ctgcttgata gatcgcaaag taaactaaga
      301 accattgaat taaatgctct aaaacgacaa cctctgtcaa atcgacattc ttttttctaa
      361 aaagtaatct aactataaat aattggaata tacttgaaat caagatcaat ataataccca
      421 ttaagaaaaa actaccaaaa tcaattgtga taaattgaat aataccataa ataattacgg
      481 cagatattgc cagtgaaata tatcctataa agataaatac cacacccata aagagtgtct
      541 ttaagaacag aaaaggcttc tttctatttg taaccaaata gctcaatata caaagtagta
      601 atagaattgt taaaatttta attatcatcg tttgacctca atatatttat ttatatcttt
      661 attattgacc acgaaaaata acaatcactt aagtgattgc caataatac
//
LOCUS       DAMQWL010000305          680 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.313, whole genome shotgun sequence.
ACCESSION   DAMQWL010000305 DAMQWL010000000
VERSION     DAMQWL010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.313"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..>680
                     /locus_tag="PF788_002930"
     CDS             <1..>680
                     /locus_tag="PF788_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDG6305112.1"
                     /translation="VLGATLRIDICEIHIEIANYIYEEIFDKEMVYPHILMRDYARQT
                     IEYISLSKDISNINLEKIRPPYKSNWYKKEYSNLNIDDYIKSLKNKLDSHLHFSIDKI
                     KNSMTTEYGRGTGAYGDFGRYVFGYAVRNWVKGFKSDQDLSNIALMRIFEMGYDAKLH
                     GEFDMWVNRYDNFNNSIERISKKYQWIAYYEILAKLVDKFPDVQYSGLWDDYIRDIDP
                     TLLLLEID"
BASE COUNT          265 a           65 c          118 g          232 t
ORIGIN      
        1 gttttagggg cgacacttcg aatcgacatt tgtgaaatac atatagagat tgctaattat
       61 atttatgaag aaatatttga taaagaaatg gtatatcctc atattttaat gagagattat
      121 gctaggcaaa caattgaata tattagttta tcaaaagata tatctaatat aaatttagaa
      181 aaaattaggc caccttataa aagtaattgg tataaaaaag aatattcgaa tttaaatata
      241 gacgattaca taaaatcttt aaaaaacaaa ttagatagcc atttacattt ttctatcgat
      301 aaaattaaaa actcaatgac aacggaatat ggaagaggaa ctggggcata tggcgatttt
      361 ggcagatatg tatttggtta tgctgtacga aactgggtaa agggttttaa aagtgatcaa
      421 gacttaagta atatagcatt aatgaggatt tttgaaatgg gttatgatgc aaaattacat
      481 ggtgaatttg atatgtgggt taatcgttat gataacttta ataattcaat tgaaagaatt
      541 agcaaaaaat atcaatggat tgcttactat gaaattttag ctaaacttgt agataaattt
      601 cctgatgttc aatattctgg actatgggat gattatatta gagatattga tcctacttta
      661 ctattacttg aaattgataa
//
LOCUS       DAMQWL010000306          652 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.314, whole genome shotgun sequence.
ACCESSION   DAMQWL010000306 DAMQWL010000000
VERSION     DAMQWL010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.314"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            46..150
                     /locus_tag="PF788_002931"
     CDS             46..150
                     /locus_tag="PF788_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305113.1"
                     /translation="MYFKNSSLNYIPTTFGGEPKKKHFPKMESASSEP"
     gene            complement(141..213)
                     /locus_tag="PF788_002932"
     tRNA            complement(141..213)
                     /locus_tag="PF788_002932"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(178..180),aa:Lys,seq:ttt)
     gene            complement(217..291)
                     /locus_tag="PF788_002933"
     tRNA            complement(217..291)
                     /locus_tag="PF788_002933"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(257..259),aa:Gln,seq:ttg)
     gene            complement(301..384)
                     /locus_tag="PF788_002934"
     tRNA            complement(301..384)
                     /locus_tag="PF788_002934"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(348..350),aa:Tyr,seq:gta)
     gene            complement(414..489)
                     /locus_tag="PF788_002935"
     tRNA            complement(414..489)
                     /locus_tag="PF788_002935"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(454..456),aa:Val,seq:tac)
     gene            complement(497..568)
                     /locus_tag="PF788_002936"
     tRNA            complement(497..568)
                     /locus_tag="PF788_002936"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(533..535),aa:Glu,seq:ttc)
     gene            complement(570..644)
                     /locus_tag="PF788_002937"
     tRNA            complement(570..644)
                     /locus_tag="PF788_002937"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(610..612),aa:Asn,seq:gtt)
BASE COUNT          191 a          159 c          148 g          154 t
ORIGIN      
        1 aagcccaata atggactggc cgcctaataa taaaagctct aaaagttgta ttttaaaaat
       61 agttctttaa attatatacc caccacattt ggtggagaac ctaaaaaaaa gcacttccca
      121 aaaatggaaa gtgcaagtag tgagccatag aggattcgaa cctctgaccc tctgattaaa
      181 agtcagatgc tctaccaact gagctaatgg ctctaatggc tgggctagct ggattcgaac
      241 caacgagtga cggagtcaaa gtccgttgcc ttaccgcttg gctatagccc aatatataga
      301 tggtggaggg gggcagattc gaactgccga acccgaagga gcggatttac agtccgccgc
      361 gtttagccac ttcgctaccc ctccagctta ttcatataat ttaataatca aaatggtgga
      421 gaatgacggg ttcgaaccgc cgaccctctg cttgtaaggc agatgctctc ccagctgagc
      481 taattctcca aaataatgac tcctacggga ctcgaacccg tgttaccgcc gtgaaagggc
      541 ggtgtcttaa ccgcttgacc aaggagccat ggctccacag gtaggactcg aacctacgac
      601 cgatcggtta acagccgata gctctaccac tgagctactg tggattaata tt
//
LOCUS       DAMQWL010000307          644 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.315, whole genome shotgun sequence.
ACCESSION   DAMQWL010000307 DAMQWL010000000
VERSION     DAMQWL010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.315"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..297
                     /locus_tag="PF788_002938"
     CDS             <1..297
                     /locus_tag="PF788_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDG6305114.1"
                     /translation="KKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQ
                     VKMVNSQIEAYALKHNRNPSSIEDLIADGFIKEAQKTCKSGETITISNGEAVAN"
     gene            275..>644
                     /locus_tag="PF788_002939"
     CDS             275..>644
                     /locus_tag="PF788_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HDG6305115.1"
                     /translation="MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVI
                     DDEANIISFITELNYIKSQAIANQGYINVRFYENSDTIKVIENNNIRFLKLKVGKIIN
                     VAKVDIIAFDKKGNINKFGSI"
BASE COUNT          261 a           74 c          107 g          202 t
ORIGIN      
        1 aagaaaactc aagcgtttac attgatagag atgctattag tgttattaat catcagttta
       61 ttattaattt taatcattcc aaatattgct aaacaaactg ctcacataca atcaacaggt
      121 tgtaatgcac aggtaaaaat ggttaatagt caaattgaag cgtatgcatt gaaacataat
      181 agaaatccat cgtctattga agacttaatt gcagatggtt ttataaaaga agcacaaaag
      241 acatgtaaat caggagagac aatcacaatt agtaatggag aagcagttgc aaattagaaa
      301 gcagtcagca tttactatga ttgagatgct tgtggtaatg atgttaatca gtatatttct
      361 acttttgaca atgacatcta aaggattaag caatcttaga gtaatagatg atgaggcaaa
      421 tatcatttct tttattactg aattgaatta tattaagtcg caagctatag caaatcaagg
      481 atatatcaat gttagatttt atgaaaacag tgacactatt aaagtaatag agaataataa
      541 tatacgattt ctaaaattaa aagtaggcaa aataattaat gttgcaaaag ttgatattat
      601 tgcctttgat aaaaaaggga atatcaataa atttggtagc ataa
//
LOCUS       DAMQWL010000308          616 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.316, whole genome shotgun sequence.
ACCESSION   DAMQWL010000308 DAMQWL010000000
VERSION     DAMQWL010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.316"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(17..>616)
                     /gene="dprA"
                     /locus_tag="PF788_002940"
     CDS             complement(17..>616)
                     /gene="dprA"
                     /locus_tag="PF788_002940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000593194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDG6305116.1"
                     /translation="KEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFL
                     LSNDKSKYLTIVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTHYPKSTLALRNKIE
                     EKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHITIDFALEQNRN
                     VYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI"
BASE COUNT          188 a           96 c           97 g          235 t
ORIGIN      
        1 ctcgttattt ttagttttaa atatagtagt cttcaaatat atcattagcg tttaatacta
       61 ccttagcacc ttcttggata cgtaataaat taccttttgt cataggatta aacatagatc
      121 caggtaaaac ataaacattt ctattttgct ctaatgcaaa atctatcgtg atgtgactgc
      181 cactttgttc cttagcctca gtaattaaaa ccccttttga caaaccgctg ataattctat
      241 tgcgctcagg aaatctatat ttagcgattg gtgtatgtgg tggatattca gatataacta
      301 aacctttttc ttctatttta tttcttaatg ctaatgtact tttgggataa tgtgtttgat
      361 ggccaaaggc taaaactgca attgtaggga gattgtattt taaagctatt tgatgtgcca
      421 ttgcatcagc tccttgagca aggccggaaa caattgttaa atatttgctt ttatcatttg
      481 ataataaaaa ttctaaagac tgttgggtat aacttgtaga atctcttgca cctactactg
      541 ccaaatgatg catattattt attaatttga tgttcccttt atagaaaaga agtaatggaa
      601 attgatatat ttcttt
//
LOCUS       DAMQWL010000309          611 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.317, whole genome shotgun sequence.
ACCESSION   DAMQWL010000309 DAMQWL010000000
VERSION     DAMQWL010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.317"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            307..389
                     /locus_tag="PF788_002941"
     tRNA            307..389
                     /locus_tag="PF788_002941"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:340..342,aa:Leu,seq:gag)
     gene            412..485
                     /locus_tag="PF788_002942"
     tRNA            412..485
                     /locus_tag="PF788_002942"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:444..446,aa:Gly,seq:tcc)
BASE COUNT          224 a           91 c           99 g          197 t
ORIGIN      
        1 tcatgacatt ttgattgaac ttttctattg actgtacagc ttatagttag tatgattaaa
       61 cacgttcctt aaaaaagaac aaattaaata aactttgatt tgaaagacag tcaattctaa
      121 atttaattta taaaatatgt tgacaataag ttctaaatgt tttattataa atagcgttgt
      181 gttaacaact gataacacaa attaatttaa tgtaaaaaaa cgattaaaag ttattgacaa
      241 atatttttaa acataatata ataaataacg ttctgaaaaa cgaagatgtt ttaaatgcct
      301 atatccgcgg tcgtggcgga atggcagacg cgctaggttg agggcctagt gggagaaatc
      361 ccgtggaggt tcaagtcctc tcggccgcat caaaattctt aatttaaata agcgggtgta
      421 gtttaatggc aaaacctcag ccttccaagc tgatgttgtg ggttcgattc ccatcacccg
      481 ctccatagat aattttaatg aacattgaaa actgaatgac aatatgtcaa cgttaattcc
      541 aaaaacgtaa ctataagtta caaacattat ttagtattta tgagctaatc aaacatcata
      601 atttttatgg a
//
LOCUS       DAMQWL010000310          584 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.318, whole genome shotgun sequence.
ACCESSION   DAMQWL010000310 DAMQWL010000000
VERSION     DAMQWL010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.318"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            156..476
                     /locus_tag="PF788_002943"
     CDS             156..476
                     /locus_tag="PF788_002943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HDG6305117.1"
                     /translation="MKFIIAILLGLILSITIAFTIIHHPILDRFNPFLKTEYSYAKVP
                     KGTQQYVNITAYSERGEKLDYKLTFNGFSPSRTYVEIKHKGQYVISITYVEKEDTPKE
                     VRQE"
     gene            473..>584
                     /locus_tag="PF788_002944"
     CDS             473..>584
                     /locus_tag="PF788_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin ABC transporter ATP-binding protein"
                     /protein_id="HDG6305118.1"
                     /translation="MIELKDLTIQKGNTHILKKLNLKFQCGKSYALIGKSG"
BASE COUNT          218 a           75 c           94 g          197 t
ORIGIN      
        1 gttattttta ttggaatatt gacgaatgta attttacatt ctcactatat aatgatgtta
       61 tttgcaacga ttcttgtcgt tcaaatatta ttgcagattt gcagcctata ctatcatggc
      121 cgacgtttta atgaagttat caaggagttt taactatgaa atttatcatt gcaatattat
      181 taggattaat attatccatt actattgctt ttacaatcat acatcatcct atacttgatc
      241 gttttaatcc tttcttaaaa acggagtata gttatgccaa agtgccaaaa ggtacgcaac
      301 aatatgttaa tattacggct tatagtgaaa gaggggaaaa gcttgattat aaattaacat
      361 ttaatggatt ttcacctagt agaacgtatg tcgaaataaa gcataaaggg caatatgtca
      421 tatcgatcac atatgttgaa aaagaggata caccaaaaga ggtaagacaa gaatgataga
      481 attaaaagat ttaaccatac aaaaaggtaa tacacatatt ttgaagaaac ttaatttgaa
      541 atttcaatgt ggaaaatcat atgcacttat tggtaaaagt ggat
//
LOCUS       DAMQWL010000311          578 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.319, whole genome shotgun sequence.
ACCESSION   DAMQWL010000311 DAMQWL010000000
VERSION     DAMQWL010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.319"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
BASE COUNT          204 a           92 c           84 g          198 t
ORIGIN      
        1 gtgggacgac gaaataaatt ttacgaaaat atcatttctg tcccactccc taataactga
       61 gttttaataa agtcttttaa cccacattaa atattatttt gcaattgcaa tgaataacaa
      121 gaaaaatctg ggacattaat cgatcaaatg ctcccttcaa agtagacatt gaataaatga
      181 aggctttgaa gggagcattt cactttgtac ttggctcaac aattttatat agacagtagt
      241 taattgaatg aaaataagct tgtaacaagt tttcaattct agtcagggcc ccaacaaaga
      301 agctgacgaa aagtcagctt acaataatgt gcaagttggg gatgggcccc aacacagaag
      361 ctgtgactat gataaagtac tactacatag ttaatcatta gtggttcttt atcattttcg
      421 cctccctttt cttattgttt tgatacacaa aaatttaagt tcaaactgtc gaataaagtt
      481 atatttgatt tcaaattatc cctaaattat taattttaca attgtggcag attttcaaaa
      541 taataattat ttcctcatta tttataaatt tatattta
//
LOCUS       DAMQWL010000312          573 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.320, whole genome shotgun sequence.
ACCESSION   DAMQWL010000312 DAMQWL010000000
VERSION     DAMQWL010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.320"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            156..362
                     /locus_tag="PF788_002945"
     CDS             156..362
                     /locus_tag="PF788_002945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305119.1"
                     /translation="MNEIETIISEIEKLLTNNTPYSISKNSGVPRQTVTDLKVGKTKI
                     KEAKFKTIIKLYEYQRTLENKTEC"
BASE COUNT          247 a           62 c           84 g          180 t
ORIGIN      
        1 gaaattttat caatatataa aaaaaacgcc aatactatta ggtattagtt tatgaattaa
       61 ctagtttggc aactagaaaa aaacaatgta ttgctaaacg tagttactgc attaggatta
      121 ttataattat aaatagaaag agagtgtgat taataatgaa tgagattgaa actattataa
      181 gtgaaataga aaagttatta actaacaata caccatatag tatttcaaaa aactcaggtg
      241 taccacgtca aacagttact gatttaaagg taggtaaaac taaaataaaa gaagctaaat
      301 ttaaaacgat aatcaagtta tatgaatatc aaagaacatt agaaaataaa acagaatgtt
      361 aacaaaaata ttttgttagg ttaggtggac aagaaattaa atttctaatg atttcatggt
      421 tgtctgtcca cgttttgtcc acctcaataa gataatctct tagttttaga aattgtacat
      481 ggttaaataa tcaaaaatgc atattatgaa attatcattg ccattaaatc ttgaatgatc
      541 tttaagcgat gatataaaag gctgaacaca gta
//
LOCUS       DAMQWL010000313          566 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.321, whole genome shotgun sequence.
ACCESSION   DAMQWL010000313 DAMQWL010000000
VERSION     DAMQWL010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.321"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..387
                     /gene="sdpA"
                     /locus_tag="PF788_002946"
     CDS             <1..387
                     /gene="sdpA"
                     /locus_tag="PF788_002946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease SdpA"
                     /protein_id="HDG6305120.1"
                     /translation="LLIYGLDNLYLYFHDVPANEQQLEQAIRNTPFYISIFTVTIIPA
                     IVEEIVFRGMIIRVIFRKHLFLGLIVSSLVFASLHESDTWIGYLPYLYSGLIFGLIYI
                     KTKRLEVVIFMHFLNNLLALLFIIWR"
BASE COUNT          190 a           87 c           73 g          216 t
ORIGIN      
        1 ctattaattt atgggttaga taatctttat ttatattttc atgacgtacc ggcaaatgaa
       61 caacaattag agcaagcaat acgaaataca ccattctata tttctatttt cactgttacc
      121 atcatccccg ctattgtgga agaaattgtt tttcgcggta tgataataag ggttatcttc
      181 agaaaacact tgtttttagg gttaattgtg tctagtttag tttttgcatc attacacgaa
      241 tctgacactt ggattggtta tttaccttac ttatattctg gtttgatttt tggcctaatt
      301 tatataaaaa caaaacgatt agaagttgta atattcatgc acttcttaaa taacttgtta
      361 gctctgctct ttataatatg gagataattt tgagataacc tttcatatta ttttcaaatt
      421 atctatctga tatttatttt attgaacttg agtcaccact taaactcaaa aatacgtgtc
      481 atcaagtgca aaataattta gaactaatac aaacataaaa acttttactt tacgcttaaa
      541 atcaaaagtc acatacctag atataa
//
LOCUS       DAMQWL010000314          562 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.322, whole genome shotgun sequence.
ACCESSION   DAMQWL010000314 DAMQWL010000000
VERSION     DAMQWL010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.322"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(299..532)
                     /locus_tag="PF788_002947"
     CDS             complement(299..532)
                     /locus_tag="PF788_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305121.1"
                     /translation="MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGK
                     LKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH"
BASE COUNT          198 a           87 c           61 g          216 t
ORIGIN      
        1 aatcgacgta agaagaatca tatatattaa tgatgaagaa gtccatacaa aatccgcatc
       61 atttgttgtt aataatggga ctataattaa tccgaaatta atcatgcatg ctatatatac
      121 tataatgtta tacacaatgt taatttttgt tcaccacctt atacttctat tttaaaaact
      181 tctttataat gatatattgt ttaatgttga aataattaga ttatctaatt ttcatttgct
      241 ttacatgtaa aaggctatat atagtatgct ctttatgatt ctaaatgctt tttaatattt
      301 aatgctcatc aacatttgga ttttgaatat tcaattcaaa aactttatta gctacgtcaa
      361 ttgtaaaatc agaaccatag ttgacatgag ctacttttaa ttttccatct aaataataga
      421 ttgcgattgc aacatcgtaa aattcgtcaa tgacaaataa actcttttcg tttgttacaa
      481 cctcatgctc tcctgagtat acaacgttaa tttcccaatc attaaaaacc atttgttaac
      541 ctccttgaac atttaaattg at
//
LOCUS       DAMQWL010000315          559 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.323, whole genome shotgun sequence.
ACCESSION   DAMQWL010000315 DAMQWL010000000
VERSION     DAMQWL010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.323"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..94
                     /locus_tag="PF788_002948"
     CDS             <1..94
                     /locus_tag="PF788_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HDG6305122.1"
                     /translation="TKVIILKNKIFVFEQSIKKHNEMMYIELCD"
     gene            144..536
                     /locus_tag="PF788_002949"
     CDS             144..536
                     /locus_tag="PF788_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305123.1"
                     /translation="MQFKLKEEEIISFLELKYPEKEFEYGRLLVGQHKRDDLDVYYFG
                     DTFLMCTIISFKTFEIKETVELSYDAVNRIVLKDGWLFRKMRIETMQKVLKYGTSKLM
                     LTDFQKENYNKYIQGQKQRVIFENGHFV"
BASE COUNT          228 a           43 c           95 g          193 t
ORIGIN      
        1 tacaaaagtc attattttaa agaataaaat atttgttttt gaacaaagta ttaaaaaaca
       61 taacgaaatg atgtatattg aactatgtga ttgaaaaaat ttttaattaa ggcttgttaa
      121 aacttaagag aggatgtttt taaatgcaat tcaaattaaa agaagaagag attattagtt
      181 ttttagaatt gaaatatcca gaaaaagagt tcgaatatgg tcgtttgtta gttggacaac
      241 ataaacgtga tgatttagat gtttattact ttggtgatac gtttttaatg tgcacgatta
      301 tttcattcaa gacatttgaa attaaagaaa cagtagaatt atcatatgat gctgttaatc
      361 gtattgtgtt aaaagatgga tggttattta gaaaaatgag aatagaaaca atgcaaaaag
      421 tgttaaaata cggtacatct aaattaatgt taactgattt tcaaaaagag aattataata
      481 aatatattca aggtcagaaa caacgcgtga tatttgaaaa tggccatttt gtctaattga
      541 tagtgaatat aattagagt
//
LOCUS       DAMQWL010000316          557 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.324, whole genome shotgun sequence.
ACCESSION   DAMQWL010000316 DAMQWL010000000
VERSION     DAMQWL010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.324"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..>557
                     /locus_tag="PF788_002950"
     CDS             <1..>557
                     /locus_tag="PF788_002950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bacteriocin-associated integral membrane family
                     protein"
                     /protein_id="HDG6305124.1"
                     /translation="TSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVR
                     SEQLVKASEAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIK
                     NQKNNVEVIIPQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFD
                     ARDSRHLSFIEAPIIVNVQASDLSN"
BASE COUNT          217 a           73 c           95 g          172 t
ORIGIN      
        1 atactagtgt tattaaagat ttgaataaaa taaaagaaac tgagaaatat tggaatgtat
       61 tagatgatta ttacacgatt gaatttgcac cttatcacga aacaaaacaa agtttgattg
      121 ataatatggt gcgatcagaa caattagtaa aggctagtga agcagaaaat aatgcgattt
      181 tattcaaacc aaagggtgac tccgttgaca atgacaactt ttcgcctgat gaggggaatg
      241 taatattagt aaataatcag ttctggtcga tttattacaa gcagtttcaa cctgatattc
      301 cgataaaaaa tcaaaaaaat aatgtcgaag taattattcc acaaaagttt catgcaatgc
      361 gtaatgaaat caatcaagca tatcattcat ggtttgaatt tgtacaaaat aaaaataata
      421 aagagaataa gttatctata cagtttatca acaaaaatga ttgtcgaatt ttttcatttg
      481 atgcacgaga tagtcgccat ttgtcattta tagaggcgcc aatcattgtg aatgttcagg
      541 catcagattt atcgaat
//
LOCUS       DAMQWL010000317          556 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.325, whole genome shotgun sequence.
ACCESSION   DAMQWL010000317 DAMQWL010000000
VERSION     DAMQWL010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.325"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            12..311
                     /locus_tag="PF788_002951"
     CDS             12..311
                     /locus_tag="PF788_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000844410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComGE"
                     /protein_id="HDG6305125.1"
                     /translation="MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQ
                     TIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQQICAISKNTTSYQKTCIQY"
     gene            229..>556
                     /locus_tag="PF788_002952"
     CDS             229..>556
                     /locus_tag="PF788_002952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500150.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDG6305126.1"
                     /translation="MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVI
                     SITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDILDDFKGVDRNDIEIRQHRIILH
                     KGEEMIE"
BASE COUNT          214 a           66 c           96 g          180 t
ORIGIN      
        1 aagaattcgt tatgaaaagc tataagtgta aaggttcatt cttaatagat agtatggctg
       61 gatttttgct aattggattg attacattac tattgatacc aatgatgaat caaatgcaag
      121 cgagtataaa ccataaacta caaacaattg atgcttctaa agtaattttg acgactgtat
      181 ctaaaattaa taaagaagaa cttaagaagg gggtaactat agggaagtat gatattaagc
      241 aaagtgacca acaaatttgt gctatttcaa aaaataccac ttcttatcaa aagacatgta
      301 tacagtatta atgtcaaagc tttttcgctc attgaaatgt tagtagcgat gatggttata
      361 agtataactt tactaattgt tccagactta attagactta gtaaaacttt tctaattgaa
      421 agtagggatt taacaactgt agatttcgaa tttttctcaa gagatattct agatgatttt
      481 aaaggagtag atagaaacga tattgaaatt aggcaacacc gtatcatttt acataaaggt
      541 gaagaaatga tcgaat
//
LOCUS       DAMQWL010000318          542 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.326, whole genome shotgun sequence.
ACCESSION   DAMQWL010000318 DAMQWL010000000
VERSION     DAMQWL010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.326"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(93..458)
                     /locus_tag="PF788_002953"
     CDS             complement(93..458)
                     /locus_tag="PF788_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HDG6305127.1"
                     /translation="MKASRILFGIGVGVAAGFVVALQGRDDKSVKNNTIDRTAPTGSK
                     SELQREFETIKQSFNDILNYGVQIKNESAEFGSSIGGEIKSLLGNFKSDINPNIERLQ
                     SHIENLQNRGEDIGNEISK"
BASE COUNT          160 a          102 c           79 g          201 t
ORIGIN      
        1 tttctaatgt catctcgttt atttggcatt taattttaaa aaataaatat gctgttacta
       61 ataaaaatag ttgtgatcga gaacgtaacc tgctacttag aaatttcgtt tccaatatcc
      121 tcgccacgat tttgtaaatt ttcgatgtgt gactgtaaac gttcaatatt aggattaatg
      181 tcagatttga agtttccaag taatgactta atttcaccac caattgaact accaaattcc
      241 gcactttcgt ttttaatttg aacaccatag tttaaaatgt cattaaaact ttgtttaatc
      301 gtttcaaatt cacgttgtag ttctgatttt gaaccagtag gggcagtacg atcgatcgtg
      361 ttgttcttga cacttttgtc gtcacgtcct tgaagtgcaa ctacaaaacc agctgctacg
      421 ccaacaccga taccgaatag aatgcgtgat gctttcattt atattctcct cacttttaac
      481 atctgttatc ttgataactc attttgttta aaattgctaa ccttgatgtt atcacttcaa
      541 ac
//
LOCUS       DAMQWL010000319          531 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.327, whole genome shotgun sequence.
ACCESSION   DAMQWL010000319 DAMQWL010000000
VERSION     DAMQWL010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.327"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(278..370)
                     /locus_tag="PF788_002954"
     CDS             complement(278..370)
                     /locus_tag="PF788_002954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305128.1"
                     /translation="MTKNSKYTNEVSKEQFQEIENVNNKVKEFY"
     gene            334..468
                     /locus_tag="PF788_002955"
     CDS             334..468
                     /locus_tag="PF788_002955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305129.1"
                     /translation="MKLHWYIYYFLSISVILFMIIYHYLATSMTVDYEITVSIAKLLL
                     "
BASE COUNT          178 a           69 c           47 g          237 t
ORIGIN      
        1 tttgaatcac taacaagttc tttatcatta agcagttcat aattgtcatc atttaaagat
       61 tctagattct ctaaaaaatt tgtatttgtt tcctgaaaat tataaataga tttataaata
      121 ttaatcttca tattacaccc cttaattata ttttacatct atttccatta ttacatttta
      181 tgagtctcgc aaattgtcag tttttaaatt atgataatta ttttccaaat agtttattaa
      241 aaaactacat ctttcttgat tgatactctt tcaaatctta ataaaattct ttgaccttat
      301 tatttacatt ctcaatttct tggaattgtt cttttgaaac ttcattggta tatttactat
      361 tttttgtcaa tatctgtaat tttatttatg attatttatc attacttagc tacgtcaatg
      421 actgttgatt atgaaataac tgtttctatt gcaaagttac ttttataatt taataaggac
      481 aaaaagaagc attctatatt aatcatttta gatataaacc aatttgatag g
//
LOCUS       DAMQWL010000320          530 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.328, whole genome shotgun sequence.
ACCESSION   DAMQWL010000320 DAMQWL010000000
VERSION     DAMQWL010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.328"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            1..530
                     /locus_tag="PF788_002956"
                     /pseudo
     CDS             1..530
                     /locus_tag="PF788_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500456.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1829 domain-containing protein"
BASE COUNT          224 a           65 c           66 g          175 t
ORIGIN      
        1 ggctatacta tatttgattt agaaaataat ggtatttctt taaataaatc aaaaaaacgt
       61 aaaaagattt ttgaagagca cctttcagct tacggtatta aatataacga taaaactcac
      121 gaaatttttg ttcaaactaa ctttaaaaat tttaataaat cgaaacataa tttattacag
      181 tgccttatat ttgttaatga tatgtactta ctttctaatc ctaagtcaca gaacatattt
      241 acagaagatg ttgcaaacaa attggatgaa cataacattt attacggaag agatttacct
      301 attataggaa gcagtggtgt tgttcataat ttcgactttt ttattagcgc taagaaaaat
      361 caaaaagaaa aatttatcaa tgctatttct aaccctaata attctatgat tattaagtcg
      421 aaaataacgg atgctatgca agcaaaaaaa taaaaagaca caggcaaaat gagtttattt
      481 ttattttaaa tgactcaaaa aaagaaataa atgaacataa taaaaatctt
//
LOCUS       DAMQWL010000321          521 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.329, whole genome shotgun sequence.
ACCESSION   DAMQWL010000321 DAMQWL010000000
VERSION     DAMQWL010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.329"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
BASE COUNT          218 a           89 c           53 g          161 t
ORIGIN      
        1 atttgaaaag aatgtctcaa ataatgtttg aattagcagg tgtcatacta agtaatgtta
       61 agtaaacatt ttatacttta tcagaacaaa aaagacatgc atcaacatgt cagtgaaact
      121 aatccatatt atcttaacaa cgaaattgaa tcgaacctga aaaacgtatt tacaaatcgc
      181 aactactcta tccaaggcaa aatcgcaaaa tctgatcccc gaaataacat atctcgaaaa
      241 aaattccata attcaatcat cttcaatatt taacaataca ttactagttc caaatatact
      301 catacataca tgtttcattg attgactgca tattgtcata aataataggg gaactaatcg
      361 ctaataatgt tgttaaacac aatacatagt aaagtgaaag attataaata catgaattgt
      421 tcaccattcc gccatatatt ttcaatcacc taatttccga ataaatatta caattttaat
      481 tcaataatta atatttaaga ccaaaataat cctaaaaagt c
//
LOCUS       DAMQWL010000322          503 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.330, whole genome shotgun sequence.
ACCESSION   DAMQWL010000322 DAMQWL010000000
VERSION     DAMQWL010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.330"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
BASE COUNT          221 a           53 c           72 g          157 t
ORIGIN      
        1 tgcacttaga gggatgttaa tcataaaaaa agagattttg aaaaatatag gctattatac
       61 tttagaatta caaattataa atcttgccag tggatatggg agttcaacat gtcacttacc
      121 ccaatttgtg gaatgttaaa taactataaa gaggaaagga gaaaaaatga taagaatggt
      181 taaagaaaaa gaacgaatag caaaattaaa tttcgaatag ctgtgacgag cttaataatt
      241 caagtactta attttatcaa atcgttcttt taaaaaggta aagggcaaaa gacctttacc
      301 acattaaata gggaggtggt atttatgaca agagaattaa ggaaaaaatt aactctctat
      361 cttaacattg caactttaat attatttatt attaatttaa ctagaaaaaa ataaattatt
      421 ctttcatttt aacaaaaatt atgaaccagt ttaaagaaat ttataataca atagaaaaat
      481 tactaaatga taaatcaata tct
//
LOCUS       DAMQWL010000323          489 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.331, whole genome shotgun sequence.
ACCESSION   DAMQWL010000323 DAMQWL010000000
VERSION     DAMQWL010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.331"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..371)
                     /gene="sarU"
                     /locus_tag="PF788_002957"
     CDS             complement(<1..371)
                     /gene="sarU"
                     /locus_tag="PF788_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator SarU"
                     /protein_id="HDG6305130.1"
                     /translation="MDYQTFEKVNKFINVEAYIFFLTQELKQQYKLSLKELLILAYFY
                     YKNEHSISLKEIIGDILYKQSDVVKNIKSLSKKGFINKSRNEADERRIFVSVTPIQRK
                     KIACVINELDKIIKGFNKERD"
BASE COUNT          160 a           71 c           51 g          207 t
ORIGIN      
        1 tagtctcttt ccttattaaa tcctttaatt attttatcta actcattaat aacacaagca
       61 atctttttac gttgtattgg agtaactgaa acaaaaatac ggcgttcatc tgcttcgttt
      121 ctagacttat ttataaatcc ttttttagat agtgacttaa tgttctttac aacatcagat
      181 tgtttgtaaa gtatgtcacc aatgatttct tttagtgaaa tactgtgttc atttttgtaa
      241 taaaaatatg ctaatatcaa caattctttt aatgataatt tatattgttg ctttaactct
      301 tgagtgagaa aaaatatgta cgcttctaca tttatgaatt tattgacctt ttcgaaagtt
      361 tgatagtcca ccttacattc tcctactatt ttctgatgtc ccaatacttt atattattta
      421 aagtaatata aaagcaatct cttttaaaga catgttaacc taaatatttt atatataata
      481 tatatatat
//
LOCUS       DAMQWL010000324          488 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.332, whole genome shotgun sequence.
ACCESSION   DAMQWL010000324 DAMQWL010000000
VERSION     DAMQWL010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.332"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..>488
                     /gene="fmhC"
                     /locus_tag="PF788_002958"
     CDS             <1..>488
                     /gene="fmhC"
                     /locus_tag="PF788_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FemA/FemB family glycyltransferase FmhC"
                     /protein_id="HDG6305131.1"
                     /translation="RIIKNYNNSVIVKMLGKIGYLHQGYTTGYSNKSQIRWISVLDLK
                     DKDENQLLKEMEYQTRRNIKKTIEIGVKVEDLSIEETNRFYKLFQMAEEKHGFHFMNE
                     DYFKRMQEIYKDKAMLKIACINLNEYQDKLKIQLLKIENEMMTVNRALNENPNSKKNK
                     SK"
BASE COUNT          226 a           40 c           80 g          142 t
ORIGIN      
        1 taggataata aagaattata ataattcagt gatagtaaag atgctaggga aaattgggta
       61 tctccatcaa ggttatacaa caggatattc aaataaaagt caaattaggt ggatttctgt
      121 attggattta aaagataaag atgagaatca acttttaaaa gaaatggaat accaaactag
      181 aagaaatata aaaaagacta ttgagattgg tgttaaggtt gaagatttat ctattgaaga
      241 aacaaatcga ttttataaat tgtttcaaat ggctgaagaa aaacatggtt ttcatttcat
      301 gaatgaagat tattttaaac gaatgcaaga aatatataaa gataaggcaa tgttaaagat
      361 agcttgtata aatcttaatg aatatcaaga taaattaaaa atacaattat tgaaaatcga
      421 aaatgaaatg atgactgtga acagagcatt aaatgaaaat ccaaattcta aaaaaaataa
      481 atcaaaat
//
LOCUS       DAMQWL010000325          480 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.333, whole genome shotgun sequence.
ACCESSION   DAMQWL010000325 DAMQWL010000000
VERSION     DAMQWL010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.333"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            232..>480
                     /locus_tag="PF788_002959"
     CDS             232..>480
                     /locus_tag="PF788_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000593194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDG6305132.1"
                     /translation="MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEW
                     VNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYITYM"
BASE COUNT          190 a           51 c           65 g          174 t
ORIGIN      
        1 tcatcaaacc agtaagacca attctatata aatttgcaaa acttatttat aaggtttaat
       61 tataaagtat gttggaaatt gaaattttaa attctttcca acatactttt cactttttaa
      121 gtcagtattt ttactcctta aaataacatt acatcgacaa tgtttttgta ttagaaatgt
      181 aaaacaaaaa tagaatatga ttttgtatga ttacaaaaag gagttgattt attgattaaa
      241 ctatttttgc ttaagttata ctgggcacac ttttcgacta aacaaattca tcaattttta
      301 atggcatatc ctaatgtaat taaagaggag ggaagaaaaa aagatagtta tttatgtgaa
      361 tgggtgaata gggaagaaaa tgttcattta ttacgtaaat actatgcttt tataaaactt
      421 gatcataacg atattattaa agaactgcag aaattaaaag taagttacat tacatatatg
//
LOCUS       DAMQWL010000326          463 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.334, whole genome shotgun sequence.
ACCESSION   DAMQWL010000326 DAMQWL010000000
VERSION     DAMQWL010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.334"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(174..>463)
                     /locus_tag="PF788_002960"
     CDS             complement(174..>463)
                     /locus_tag="PF788_002960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDG6305133.1"
                     /translation="IGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNI
                     DGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD"
BASE COUNT          173 a           73 c           41 g          176 t
ORIGIN      
        1 ttcaaaattt atataatgaa taaattaaca tgtattgaaa aaaaagcgaa atgcagccta
       61 tcctctaatg taaaccaaac gatatatctc gtcagacttt atatttaaac gctatgtgtc
      121 acttttaaaa tgaatattac taagattgtc atatcaatta ttattgcatc gaattaatct
      181 tttaaatttc tgtaataaaa cctattatct acatctaatt taggaaaact acttggtaaa
      241 tctcctcgct taatttcacg gaagccatta ttagaataaa aatactgtgc actaataaat
      301 ttatcaattg ttcctaaata aataccatcg atattttgtt ctttacatgt cattataact
      361 ttatctaaaa gttttttacc tatttttaaa ttcctataac ctttatcaac aaacattttt
      421 ttaagtgcag acatattatt atctagtcta atcaaaccta tag
//
LOCUS       DAMQWL010000327          454 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.335, whole genome shotgun sequence.
ACCESSION   DAMQWL010000327 DAMQWL010000000
VERSION     DAMQWL010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.335"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..264
                     /locus_tag="PF788_002961"
     CDS             <1..264
                     /locus_tag="PF788_002961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305134.1"
                     /translation="DNANVLKLDTNQLNENIKVIDDIFKNYEQIEPTIEVENGNTKLK
                     LNGYFIASIISPLNLNKLNNLYVEEEFYHTYNELIVKYTEVKE"
     gene            270..>454
                     /locus_tag="PF788_002962"
     CDS             270..>454
                     /locus_tag="PF788_002962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000719177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 1"
                     /protein_id="HDG6305135.1"
                     /translation="MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYK
                     GNYDEIIKALKKQGKMDR"
BASE COUNT          196 a           40 c           75 g          143 t
ORIGIN      
        1 gataatgcga atgtattaaa attagatact aatcagttaa atgaaaacat aaaagtcatt
       61 gacgatatat ttaaaaatta tgagcagata gagccaacta tagaagtcga aaatggaaat
      121 acaaaattaa aattaaatgg atattttatt gcgtcaatta taagcccatt aaatttaaat
      181 aaacttaata atttatatgt tgaagaagaa ttttatcata catataacga attaattgtt
      241 aaatatactg aggtaaagga ataattataa tgaaaaaaat atttatgatg gtacatgagt
      301 tagatgtgaa taaaggtggt atgacctctt cgatgttcaa tagaagtaaa gagttttatg
      361 atgcggacat acctgctgat attgttactt tcgattacaa aggaaactat gatgaaatta
      421 ttaaagcttt gaaaaaacaa ggtaaaatgg atcg
//
LOCUS       DAMQWL010000328          446 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.336, whole genome shotgun sequence.
ACCESSION   DAMQWL010000328 DAMQWL010000000
VERSION     DAMQWL010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.336"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..386)
                     /locus_tag="PF788_002963"
     CDS             complement(<1..386)
                     /locus_tag="PF788_002963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDG6305136.1"
                     /translation="MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFI
                     ASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNR
                     FLIMVTWNIDEPGGVIKLIKHLAIYS"
BASE COUNT          175 a           66 c           60 g          145 t
ORIGIN      
        1 aaactataaa tagccaagtg tttaattagc ttaataacac caccaggttc gtcaatattc
       61 catgtaacca taatcaagaa tctatttttc attgatatct ttctatttaa aaatactagt
      121 gtcaataggg ttacggtcac gatacccaga ccacctattt gaattaataa tagtattact
      181 atctcaccaa gtatattaaa ctgtgatcct atatcaactg gggacaagcc agtaactgta
      241 aatgcacttg aagctataaa tagggcatct aaaaaagata ttggcttttt accagtaaaa
      301 ggtaaataca ataaaagtgc acctatgata gttgtagaga agaaaagcat taaataaaaa
      361 tataaaggtt tgtggacttt gttcatttta atttcatact cctttatatt ataaattaat
      421 aattagataa tatcataaat gaaaat
//
LOCUS       DAMQWL010000329          441 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.337, whole genome shotgun sequence.
ACCESSION   DAMQWL010000329 DAMQWL010000000
VERSION     DAMQWL010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.337"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            1..441
                     /locus_tag="PF788_002964"
                     /pseudo
     CDS             1..441
                     /locus_tag="PF788_002964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277741.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
BASE COUNT          158 a           64 c           72 g          147 t
ORIGIN      
        1 ttcctcaaaa tgatatttcg cgatatgtta atgaaattgt tgaaacgata cctgatagcg
       61 aattcgatga attcagacat catcgtggtg caacatccta tcatccaaaa atgatgttaa
      121 aaatcatctt atatgcatat actcaatctg tattttctgg tcgtagaata gagaaattac
      181 ttcatgacag tattcgaatg atgtggttag cccaagatca aacactttct tataaaacta
      241 ttaatcgttt tagagtgaat cctaatactg atgcgttaat tgaatcttta tttattcagt
      301 tctatagtca atgtttaaag caaaatctta ttgatgataa ttcaattttt attgatggta
      361 caaaagtaga agctagtgcc aatagatata cattggtgcg gaagaaagta ttcaaaatca
      421 cgaatcgaaa ttgaacgaga a
//
LOCUS       DAMQWL010000330          425 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.338, whole genome shotgun sequence.
ACCESSION   DAMQWL010000330 DAMQWL010000000
VERSION     DAMQWL010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.338"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            <1..>425
                     /locus_tag="PF788_002965"
     CDS             <1..>425
                     /locus_tag="PF788_002965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDG6305137.1"
                     /translation="DKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLE
                     EIIELTKFDSSQLNQFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYF
                     WSIIENLKEDNRTILYTSHYIEEVERMSDKIILIENGEI"
BASE COUNT          172 a           60 c           62 g          131 t
ORIGIN      
        1 tgataaagac aagttattac aaagtgaaaa tcgcagtata atgttccaaa aaacgatgtt
       61 tccagatcaa ttaaaagtta ttgagattat caacttatat caatcatttt acgaaaatcc
      121 attaccattg gaagaaataa tagaactgac gaaatttgat tctagtcaac tgaaccaatt
      181 tgtaaataaa ctttctggtg gtcaacaacg attactcgat tttgtattat ctttaatcgg
      241 acaaccacaa ttgatcttat tagatgaacc aacatcgact atggatatag aaattagaga
      301 atatttttgg tcaattattg aaaatttaaa agaagataat cgaacgatac tctatacatc
      361 gcactatatt gaagaagtcg aacgtatgtc agacaaaatt attctcattg aaaatggaga
      421 aataa
//
LOCUS       DAMQWL010000331          406 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.339, whole genome shotgun sequence.
ACCESSION   DAMQWL010000331 DAMQWL010000000
VERSION     DAMQWL010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.339"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..>406)
                     /locus_tag="PF788_002966"
     CDS             complement(<1..>406)
                     /locus_tag="PF788_002966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lantibiotic dehydratase"
                     /protein_id="HDG6305138.1"
                     /translation="LSVEFFNLFLNTEQIKYSDLQLNAQMKESILTTTFNLYCTLQEI
                     NFDGDNKKVRDAKESLLKYLIRMSTRPTPFGLLSGINLGHFVNEPTRLKVGNSIQKYV
                     KVDGEWLYKLVSYIESIDEYYQNLKVIWNSKAH"
BASE COUNT          138 a           66 c           42 g          160 t
ORIGIN      
        1 atgtgcttta ctattccaaa taactttcaa attttgataa tattcatcaa tactctcaat
       61 ataactaacc agtttataca accattcgcc atcgactttc acatattttt gaatactatt
      121 tccaacttta agacgtgttg gttcatttac aaaatgcccc aaattaatac cacttaataa
      181 tccaaatgga gttggacgtg ttgacattct aattaaatat tttaataaac tttctttagc
      241 atctctaacc ttcttgttat cgccatcaaa atttatttct tgtaaagtac aatataagtt
      301 aaatgttgtt gttaggattg attctttcat ctgagcattt aattgtaagt cgctatattt
      361 aatttgttca gtatttaaaa ataaattgaa aaattcaact gataat
//
LOCUS       DAMQWL010000332          404 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.340, whole genome shotgun sequence.
ACCESSION   DAMQWL010000332 DAMQWL010000000
VERSION     DAMQWL010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.340"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            269..>404
                     /locus_tag="PF788_002967"
     CDS             269..>404
                     /locus_tag="PF788_002967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016187510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sphingomyelin phosphodiesterase"
                     /protein_id="HDG6305139.1"
                     /translation="MMVKKTKSNSLKKVATLALANLLLVGALTDNSAKAESKKDDTDL
                     K"
BASE COUNT          154 a           52 c           48 g          150 t
ORIGIN      
        1 acactgttaa aagttctttt aattttgatt aactaattaa tttacaatac ctaaaatgtt
       61 gtttggtttt gtttatacca agcttcaaac ttaaatgtca taacaacatt catttcttaa
      121 ttccgattag atttgtcgat tatatttaca gcatctttat actcaaaaaa catttactta
      181 aaaatataaa ttcgatttaa taattaattt aaatttagtt aatcaatttt gcatctattt
      241 tgttgtaagc tatataaaag gagtgataat gatggtgaaa aaaacaaaat ccaattcact
      301 aaaaaaagtt gcaacacttg cattagcaaa tttattatta gttggtgcac ttactgacaa
      361 tagtgccaaa gccgaatcta agaaagatga tactgatttg aagt
//
LOCUS       DAMQWL010000333          402 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.denovo.341, whole genome shotgun sequence.
ACCESSION   DAMQWL010000333 DAMQWL010000000
VERSION     DAMQWL010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.denovo.341"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            177..402
                     /locus_tag="PF788_002968"
                     /pseudo
     CDS             177..402
                     /locus_tag="PF788_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277741.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          160 a           59 c           57 g          126 t
ORIGIN      
        1 atcccttcgt ataatttaat aaatactact aaactaaatt aacgaggtgc cttatgtata
       61 aaaattataa catgacccaa cttacactac caatagaaac ttctgttaga attcctcaaa
      121 atgataatac gcgatatgtt aatgaaattg ttgaaacgat atctgatagc gaattcgatg
      181 aatttatatg tcctaataac aaaagaatag gttttaaaag atatgcatac cgtaatgata
      241 gatatagttt taaacgtgac ttcaagctat atgaatgtga tgactgttca tcatgttctt
      301 tgagacatca atgcatgaag ccaaattcga aatccaataa gaaaattatg aagaattata
      361 attgggaata ctttaaagcc caaattaatc aaaagctttc tg
//
LOCUS       DAMQWL010000334        10342 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.guided.085, whole genome shotgun sequence.
ACCESSION   DAMQWL010000334 DAMQWL010000000
VERSION     DAMQWL010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 10342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10342
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.guided.085"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..335)
                     /locus_tag="PF788_002969"
     CDS             complement(<1..335)
                     /locus_tag="PF788_002969"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501068.1"
                     /note="catalyzes the formation of
                     4-imidazolone-5-propanoate from urocanate during histidine
                     metabolism; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HDG6305140.1"
                     /translation="MRKIQAKKGLSIECKGWEQEAVLRMLYNNLDPEVAERPEDLVVY
                     GGIGKAARNWEAFEAIEKTLRELESDETMLVQSGKPVAVFKTHEEAPRVLISNSVLVP
                     EWANWDHFN"
     gene            495..1379
                     /locus_tag="PF788_002970"
     CDS             495..1379
                     /locus_tag="PF788_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDG6305141.1"
                     /translation="MKIIQLEYFLAIVKYNSFTKAAQFLHISQPSLTATIKKMEADLG
                     YDLFTRSTKDIKITEKGIQFYRYASELVQQYRSTMEKMYDLSVTSEPRIKIGTLESTN
                     QWIANLIRKHHSDYPEQQYRLYEIHDKHQSIEQLLNFNIHLAITNEKITHEDIRSIPL
                     YEESYILLAPKETFKNQNWVDVENLPLILPNKNSQVRKHLDDYFNRRNIRPNVVVETD
                     RFESAVGFVHLGLGYAIIPRFYYQSFHTSNLEYKKIRPNLGRKIYINYHKKRKHSEQV
                     HTFVQQCQDYLYGLLEAL"
     gene            1501..1920
                     /locus_tag="PF788_002971"
     CDS             1501..1920
                     /locus_tag="PF788_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FosB1/FosB3 family fosfomycin resistance
                     bacillithiol transferase"
                     /protein_id="HDG6305142.1"
                     /translation="MLKSINHICFSVRNLNDSIHFYRDILLGKLLLTGKKTAYFELAG
                     LWIALNEEKDIPRNEIHFSYTHIAFTIDDSEFKYWHQRLKDNNVNILEGRVRDIRDRQ
                     SIYFTDPDGHKLELHTGTLENRLNYYKEAKPHMTFYK"
     gene            complement(2176..3111)
                     /locus_tag="PF788_002972"
     CDS             complement(2176..3111)
                     /locus_tag="PF788_002972"
                     /EC_number="3.5.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamase"
                     /protein_id="HDG6305143.1"
                     /translation="MYKQGEPNLWTGRLDSETDPKKFRHFQTVTFEDLSKLEKSSMPS
                     GVGILGYAVDKGVALNKGRIGAKEGPDAIKQAFAGLPDLNQCETLVDYGNVYHDHEEL
                     IDTQKEFAMLAAKSIANHRQTFLLGGGHDIAYAQYLATRKVYPTQSIGVINIDAHFDT
                     RAEQQSTSGTSFRQILEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSH
                     VSPTIKDMIERFVHEHDVIMFTICMDVIDSAFAPGVSAPAVLGLYPHTVLELAKRIIP
                     SDKVSSVSIAEMNPTYDADNRTAKLVANLVHHFLK"
     gene            3401..4660
                     /gene="sdpC"
                     /locus_tag="PF788_002973"
     CDS             3401..4660
                     /gene="sdpC"
                     /locus_tag="PF788_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease SdpC"
                     /protein_id="HDG6305144.1"
                     /translation="MKNNKISGFQWAMTIFVFFVITMALSIMLRDFQSIIGVKHFIFE
                     VTDLAPLIAAIICILVFKYKKVQLAGLKFSISLKVIERLLLALILPLIILIIGMYSFN
                     TFADSFILLQSTGLSVPITHILIGHILMAFVVEFGFRSYLQNIVETKMNTFFASIVVG
                     LMYSVFSANTTYGTEFAAYNFLYTFSFSMILGELIRATKGRTIYIATTFHASMTFGLI
                     FLFSEEIGDLFSIKVIAISTAIVAVGYIGLSLIIRGIAYLTTRRNLEELEPNNYLDHV
                     NDDEETNHTEAEKSSSNIKDAEKTGVATASTVGVAKNDTENTVADEPSIHEGTEKTEP
                     QHHIGNQTESNHDEDHDITSESVESAESVKQAPQSDDLTNDSNEDEIEQSLKEPATYK
                     EDRRSSVVIDAEKHIEKTEEQSSDKNK"
     gene            complement(4726..5412)
                     /locus_tag="PF788_002974"
     CDS             complement(4726..5412)
                     /locus_tag="PF788_002974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase A"
                     /protein_id="HDG6305145.1"
                     /translation="MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLI
                     KERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGG
                     ALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKV
                     ERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVG
                     TQEGVKILEK"
     gene            5586..6239
                     /locus_tag="PF788_002975"
     CDS             5586..6239
                     /locus_tag="PF788_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDG6305146.1"
                     /translation="MISIHAISTGKIQDLPYSSKRPMRSALDKTKISQTTWLSSTGFT
                     GDEQAYKDHGGPHKAVCGFSKHNYALYQDDLPTLPTHAMFGENLTFDYLDESDVYFGN
                     QYRLGEALIEVSEIREPCWKIQAKYNIPDLVKRMSTSGKTGFYFRVLKQGYVSPNDQL
                     YLIQEAPIEHRLSVQQLNDLYYNDRQNQDMLRYALNNPFLSPTRRDKLQKMYNRTLK"
     gene            complement(6475..7494)
                     /locus_tag="PF788_002976"
     CDS             complement(6475..7494)
                     /locus_tag="PF788_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HDG6305147.1"
                     /translation="MIVEVEHQRQGVDLIKIDNDETKIIFTNYGARVVSWKYHDNNIV
                     LGNVVEADEFYHSNPFKFGASIGRYSGRIDNAKFKLKGKEYQLEKNNGEHHLHGGCHG
                     LDNKLFDYEIRNEIAQIKVIFKTVLKSADDHFPGDIDVTITHIYDADHQWSIEYEAVA
                     SEDTLFSPTNHVYFNLNRDNNVVDNHRISSNQLDMYVLDERNIVTGDILDLHEVFEDN
                     KIKLSDIFTSQHAQLSQQMTRFGGLDHPFTVGEHKMYVENHEFMLEVDTDMPHVVFFT
                     FNQPDEWDSPFNIYKPHSGFTLETQFLPNDINLYGEKAPSILKAGEVFNSKTSFRIEE
                     KVEND"
     gene            complement(7524..7850)
                     /locus_tag="PF788_002977"
     CDS             complement(7524..7850)
                     /locus_tag="PF788_002977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfA family protein"
                     /protein_id="HDG6305148.1"
                     /translation="MLYPIFIFILAGLCEIGGGYLIWLWLREGQSSLVGLIGGAILML
                     YGVIATFQSFPSFGRVYAAYGGVFIIMSLIFAMVVDKQMPDKYDVIGAIICIVGVLVM
                     LLPSRA"
     gene            complement(7899..8084)
                     /locus_tag="PF788_002978"
     CDS             complement(7899..8084)
                     /locus_tag="PF788_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDG6305149.1"
                     /translation="MYLKNKIDESDTHLSYKMMMKACYSYFFIFSYRIMSKKVYNMNV
                     KTNFLKWECEVRRNVNK"
     gene            complement(8068..9300)
                     /locus_tag="PF788_002979"
     CDS             complement(8068..9300)
                     /locus_tag="PF788_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDG6305150.1"
                     /translation="MHKFWATFTLTYIKKIKAKSFVIFMIIIAALMIGLSNIDKIINM
                     FDDGPDKIGVAAPNEQIYKVFKQQANTFHSDAKFTKVSIEDAEKEVKKHKLDKAYIIK
                     VNQNRTLQGTIISEKRVSHEDSQKVQALLTAIQTNMVAGELNINKEDLQKLQAQSKVD
                     NKVISNDEVDKVSEGQKIFNYALAYGIIFLMFFIVLNYASQIAMEIASEKTSRVIEMI
                     ITSISPIQHIFAKILGVIAVAVTQIILIVLMAVICIFAFDLKDLLQGFNVEMNQLSWQ
                     IIIVGIISSIVGITAYVLLAAILGSLTSRIEDLNQSLMPLTLLGMIAFYIAIFTINNP
                     DGQLALITSYIPFLAPFQLVVRAQTSGLQIYEVILSSLISIVMVAVLIWIAIKTYKDS
                     VLTFERGLFNSMKRVFKK"
     gene            complement(9293..10192)
                     /locus_tag="PF788_002980"
     CDS             complement(9293..10192)
                     /locus_tag="PF788_002980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDG6305151.1"
                     /translation="MGLVIEHVTKRFGKMTAVNDISLKLESGKMLGFLGRNGAGKTTT
                     FRMILGLSEPTEGHITYNGKKLDKTMYNRIGYLPEERGLHGKLTVEEELKYLATLKGM
                     SKTEIQQQISYWLERFDITENRKKRIDSLSKGNQQKIQLLASMLHKPELLILDEPFSG
                     LDPVNVELLKEAVKDLNDWGSTIVYSSHRMEHVEELCDDVCILDKGQLVVSGDINHVR
                     ASNGNKKVVIESETTLPDLTNIRGIIHSENMKQGLQLTIENEDVAKDIYQVVAHQGYV
                     KRFQVVEPSLQDIFIEKVGGKDA"
BASE COUNT         3508 a         1913 c         1393 g         3528 t
ORIGIN      
        1 tcattaaaat gatcccagtt tgcccattca ggcactaata ctgaatttga aattaataca
       61 cgtggcgctt cttcatgtgt tttaaataca gcaactggct ttcctgattg tactaacatt
      121 gtctcatctg attctaattc tcgtaacgtt ttctctattg cttcaaaagc ttcccaatta
      181 cgtgctgctt ttccaatacc accataaaca actaaatctt ctggtctttc agcaacttct
      241 gggtctaaat tgttgtataa cattctaagt actgcttctt gttcccaacc tttacactca
      301 atactcaaac ctttttttgc ttgaattttt ctcataaaat tcgctcctgt tcttttaaga
      361 agttaattcc actaaattta aaacgcttac attattatct tcaatattca ttatagtatg
      421 ttaaaatata gccaacaaat ataaataaac taattatcca tagcttgaat ctataaataa
      481 aaggagcaaa acacatgaaa attattcagt tagaatactt cttggctatc gtgaaatata
      541 atagttttac taaagctgca caatttttac atattagcca gccatcttta actgctacga
      601 ttaaaaaaat ggaagcagat ttaggttatg acttatttac acgttcaaca aaagacatca
      661 agattaccga aaaaggaata cagttttatc gttatgcgag cgaattagtt caacaatatc
      721 gatccacgat ggaaaaaatg tatgatttaa gcgttacatc agaaccaagg ataaaaattg
      781 ggactcttga atctacgaat caatggattg cgaatttaat tcgaaagcac cattccgact
      841 accctgaaca gcaatatcgt ttatatgaaa tacatgataa acatcaatct atagagcaat
      901 tactgaattt taatattcat ttagctataa caaatgaaaa aataacccac gaagatataa
      961 gatccattcc tttatatgag gaatcttaca ttttattagc acccaaggaa acatttaaaa
     1021 atcaaaattg ggtagatgtt gaaaatttgc cactcatatt accaaacaaa aattctcaag
     1081 tgcgcaaaca cttagatgac tattttaata gaagaaatat tcgtccaaat gtcgttgtag
     1141 aaacagatcg attcgaatca gcagttggat ttgttcatct cggcttaggt tacgctatca
     1201 ttccgagatt ttattaccaa tcatttcaca cgtctaattt agaatataaa aaaattcgtc
     1261 caaacttagg ccgaaaaatt tatatcaatt accataaaaa acgcaaacac tccgaacaag
     1321 tacatacatt cgtacaacaa tgccaagatt atttatatgg acttttagag gctctttaac
     1381 ttaagttatt agagcctctt atgcagttgc gcagatcatc gtataaaaat taatgacgtc
     1441 atttcaaaaa tcgatacaaa aataatttat tataaaaatt ctaagaaaga agtgaagcag
     1501 atgttaaaat ctattaatca tatatgcttt tcagtcagaa atttaaacga ttcaatacat
     1561 ttttatagag atattttact tgggaaattg ctattgactg gtaaaaaaac tgcttatttt
     1621 gagcttgcag gcctatggat tgctttaaat gaagaaaaag atataccacg taatgaaatt
     1681 cacttttcat atacacatat agctttcact atagatgaca gcgaatttaa atattggcat
     1741 cagaggttaa aagataataa cgtgaatatt ttagaaggaa gagttagaga tattagagat
     1801 agacaatcaa tttactttac cgaccctgat ggtcataagc tagaattaca tactggcaca
     1861 cttgagaaca gattaaatta ttataaagag gctaaaccac atatgacatt ttacaaataa
     1921 ggtgtcatta taaaaaggcc tcttgaactc cgttaaaatt ttaattaatt attatataat
     1981 aagagaactt ttcaaacaat acagttgtta tttttgctat ttcaacaaac ataaataagc
     2041 agtaagatga ctacaactta agagtcttct tactgcaatt atttttcaaa tatatcaacg
     2101 ttaatataac ttctattaag aaatactcac attctgccct gcaatgcaaa tctcgtcaca
     2161 tataaatatt tttaattatt ttaaaaaatg atgcactaaa ttagcaacga gcttagcagt
     2221 tctattgtca gcgtcatatg ttggattcat ctcagcaata ctaactgaag acaccttatc
     2281 acttggaata atacgttttg ctaattcaag aacagtatgt ggatacaaac ctaacactgc
     2341 cggcgcactt accccaggcg caaacgcact atcaatgaca tccatacaaa tcgtaaacat
     2401 aatgacatca tgttcatgta caaaacgttc aatcatatct ttaattgttg gtgatacgtg
     2461 actcaataat tcatctgcaa agacataatc aatctttttc tctttagcat aatcaaataa
     2521 actttgcgta ttaccacctt gagcaatacc aagcactaaa taatctgtgt tttcatcttc
     2581 ttctaaaatt tgtctaaagc tcgttccaga tgtagattgt tgttcagcac gtgtatcaaa
     2641 atgcgcatca atatttatca caccaataga ttgtgttgga tagactttac gtgttgctaa
     2701 atattgagca tacgcaatat catgtccacc acctaataaa aatgtttgtc tatgattagc
     2761 aattgacttc gctgcaagca tagcaaattc tttttgagta tcaattaatt cctcatgatc
     2821 atgataaaca tttccgtaat cgactaaagt ttcacattga ttcaaatccg gcaaacctgc
     2881 aaatgcttgt ttaatcgcat ctggtccttc ttttgcacca atgcgcccct tgtttaaagc
     2941 aacacctttg tcaacagcat agcctaatat accgacccct gatggcatac tactcttttc
     3001 cagcttagac aaatcttcaa atgttactgt ttgaaaatgt ctaaattttt tcgggtctgt
     3061 ttcactatct aaccttccag tccataaatt tggttcacct tgcttgtaca cagcatttcc
     3121 ccctcttatt tatgtggctt attaacaatt aaagtataac gtataggaaa ttttgaattc
     3181 aattcatagt taaatccgta tcttaaaaat acttatctac attactttta cccctatttt
     3241 ctatgtaata acgaatactt agctgattta tgttaataaa atacgtcaag actattacat
     3301 tttcattaat attgacatag acaatttatc tctcggcttg taatatgtat aattgttact
     3361 aaaagatatt ttgcttgtta cctaatggag gttacatata atgaagaaca ataaaatttc
     3421 tggttttcaa tgggcaatga cgattttcgt cttctttgtc attacaatgg cgttatccat
     3481 tatgctcaga gatttccagt ctataattgg tgtcaaacac tttatatttg aagttacaga
     3541 tctagcacca ttaattgctg caatcatttg tatactcgtt ttcaaatata aaaaggtcca
     3601 acttgcaggt ttaaaattct caatcagcct gaaagtaatt gaacgtctat tgctagcttt
     3661 aattttacct ttaattattc taattattgg tatgtacagc tttaatacat ttgcagatag
     3721 ctttatttta ttacaatcaa caggcttatc agtacctatt acacacattc tgattggaca
     3781 tattctgatg gcgttcgtag tagaattcgg attccgttca tacttacaaa atattgttga
     3841 aacgaaaatg aacacgttct ttgcaagtat tgttgttggt ttgatgtatt cagttttctc
     3901 agcaaataca acttatggta cagaatttgc tgcttataac ttcctttata cattctcatt
     3961 ctctatgatt cttggtgaat taattagagc gactaaagga cgtacaattt atattgcaac
     4021 gacattccat gcttcaatga cattcggact tattttcttg tttagcgaag aaatcggcga
     4081 tctattttca atcaaagtca tcgccatttc aacagcaatc gttgcagtag gatacattgg
     4141 tttaagctta attatccgag gtattgcata tttaacaaca agacgaaacc ttgaagaact
     4201 tgagcctaat aattatttag accatgtcaa tgacgatgaa gaaactaatc atactgaggc
     4261 tgaaaaatct tcttcaaata ttaaagatgc tgaaaaaaca ggtgtagcta ctgcatcaac
     4321 ggttggtgtt gctaaaaatg atactgaaaa tacagtggct gacgaaccaa gcattcatga
     4381 aggtactgaa aaaacagaac ctcaacatca cataggtaat caaactgaat ctaatcatga
     4441 tgaagatcat gacatcactt cggagtcagt agaatcagca gaatcagtta aacaagcacc
     4501 acaaagtgac gatttaacaa acgattcaaa tgaagatgaa atagagcaat cattaaaaga
     4561 acctgcgact tataaagaag acagacgttc atcagttgta attgatgcag aaaaacatat
     4621 cgaaaaaact gaagaacaat cttcagataa aaacaaataa taacaaagcg cttgctagta
     4681 cctcttaaaa agatgatgct agcaagcgct tttctatact atatattatt tttctaaaat
     4741 tttaacaccc tcttgagtgc ctacaataac ttgatctgcc atatctaaga agtatcctgt
     4801 ctcaaacaca cctgtcagat gaattaaata ctcatggaac ttatatgggt caattccttt
     4861 tggtaactta caatctaaaa tataattgcc attatcagtt ataaatgcga catcttcgtt
     4921 tacacgacgt tctactttta tatcagcgta tgattcaatt ttacgtaata tgtgatacca
     4981 gttaaattta tccacctcta ctggtaactt aaacgtctca cctaagtatt gaactatttt
     5041 cgtttcatcg acaaccacaa caaaacgcga tgccatttca tctataactt tctctctgaa
     5101 cagcgcacca ccgccacctt taattatatt taaagatgga tctacttcat cagcaccatc
     5161 aattgctaag tcgatatgat caacatcatt gatttcacat attttaatac ctaattcttt
     5221 tgctaaaaat gcaattttat tagaagtgca tacacctgta atattgtaac cacgttcttt
     5281 aattagttgc gccatttgag gtaagagtaa ttccattgta cttcctgtac caattcccag
     5341 cgtcatgtca ccattgattt gacttaaaac atcatttaat gtcattaact tgagtgcttt
     5401 gacatctttc atgaaggtag cctcccatat ttatgtaatc tattcaattc atattttaca
     5461 tgactcgtat aaattaacat acccttattt ctaacatttt tttaaacata tcaatcagaa
     5521 tttacaattc taaaaatgtt ttatagtaca atatatttta aataatactc gttaaggaga
     5581 atgatatgat atcaattcac gcaatttcga caggaaaaat ccaagatttg ccttatagct
     5641 cgaaaagacc gatgcgctct gctttagata aaactaagat ttcacaaaca acatggttat
     5701 cttcaactgg tttcactggt gatgaacagg cttataaaga tcatggtgga ccacataaag
     5761 cagtttgtgg gtttagtaag cataattatg cactgtatca agatgattta cctacactac
     5821 ctactcatgc gatgtttgga gagaatttaa catttgatta tttagacgaa tctgatgttt
     5881 actttggtaa tcaatatcgt ttaggtgaag cgttaattga ggtttctgaa attagagaac
     5941 catgctggaa aattcaagca aaatataata ttcctgattt agtgaagcgc atgtctacat
     6001 ctggtaaaac aggtttctat ttccgggtat taaaacaagg ctatgtatct ccaaatgatc
     6061 agctttactt aatacaagaa gcaccaatcg aacatcgttt atctgtacaa cagcttaatg
     6121 acctttatta taatgataga caaaatcaag atatgttacg atatgcacta aacaatccat
     6181 ttctgtcacc aacaagacgc gataaacttc aaaaaatgta taacagaaca ttgaaataat
     6241 tacctttcat tataagtgtt aaatgaactt ttcaaaacaa aaaggaatca acttacacat
     6301 cgtttgtata atagtcttat ctataaccac tgatgctatt gattcctttt ttatgttata
     6361 tattttcttt atttcaaact gtatattaat gatgtcactt catttgatac gattcttgat
     6421 aacctattca aaattccgcc aaataacata aatattatat aaatgccgat acttttaatc
     6481 attttctact ttttcttcga tacggaaact tgttttcgaa ttgaacactt caccagcttt
     6541 taaaattgac ggtgcttttt caccatataa attaatatca tttggtaaaa attgtgtttc
     6601 taatgtaaag ccagaatgtg gtttataaat attaaatgga ctatcccact catcaggctg
     6661 gttaaaagta aagaacacaa catgaggcat atctgtatcg acctctaaca taaattcatg
     6721 attttcaaca tacattttat gttcaccaac tgtaaatggg tgatcgagac caccaaaacg
     6781 tgtcatttgt tggcttaatt gcgcatgttg tgatgtaaaa atatcactca attttatctt
     6841 gttatcttca aacacttcat gtaaatctag aatatcacct gtaacaatat ttcgctcatc
     6901 taatacatac atatctaatt gattacttga aatgcgatga ttatcaacga cattattatc
     6961 tcgattcaaa ttgaagtaca catgattcgt aggactaaac aatgtgtctt ctgatgcaac
     7021 tgcttcgtat tcaatcgacc attggtgatc cgcatcataa atatgtgtaa tcgtcacatc
     7081 gatatcaccc gggaaatgat catcagctga tttcaacacc gtcttaaata taactttaat
     7141 ttgagcaatt tcatttctaa tttcataatc aaataactta ttgtccaaac catgacatcc
     7201 accatgtaaa tgatgttcac cgttgttttt ttctaactga tattctttac ctttcaactt
     7261 aaatttagca ttatcaattc taccgctata tcttcctata gaagcaccaa atttaaaagg
     7321 attactatga taaaattcat ccgcttcaac aacatttcca agaacaatat tattatcatg
     7381 atatttccaa gacactactc ttgctccata attcgtaaaa ataattttag tttcatcatt
     7441 atcaattttg attaaatcta caccttgtct ttggtgctca acttcaacta tcatttttac
     7501 ttctcccttc taaccacaag tgttcaagct ctgctgggta gcaacattac taaaacacct
     7561 acaatacaaa tgattgcacc gataacatca tatttatctg gcatttgttt atctacgacc
     7621 atcgcaaaaa tcaaactcat gatgataaat acgccaccat atgctgcata tactcttccg
     7681 aatgatggaa atgattgaaa tgtcgcaatg acaccatata acatgagtat cgcaccgcct
     7741 attagcccaa caagtgaaga ctgtccttcc ctaagccaca gccaaatcag gtatccccca
     7801 cctatttcac ataagccagc taatataaat ataaaaatcg gatataacat gaaatcactc
     7861 catcacacat ttgctatcaa taatctatcg gctacatatc atttgtttac atttcttctt
     7921 acttcacatt cccattttaa aaagttcgtt ttcacattca tattgtacac ttttttagac
     7981 attattctat agctaaatat aaaaaaataa gagtaacacg ctttcatcat cattttatat
     8041 gataaatgtg tgtcactctc atcaatttta ttttttaaat acacgtttca ttgaattaaa
     8101 taagccacgt tcaaatgtaa gtactgaatc tttatatgtt ttaattgcaa tccatatcaa
     8161 gacagctacc attacaattg agattaaaga acttaagatg acctcatata tttgaagccc
     8221 tgaagtttga gcgcgtacaa ctaattgaaa tggcgctaaa aacggaatat aacttgtgat
     8281 taaagcaagt tgtccatcag gattatttat cgtgaatatc gcgatataaa atgcaatcat
     8341 accaagtaat gtcagtggca tcaaagattg atttaaatct tctattctag atgttaatga
     8401 tccgaggatg gctgcaagta atacatacgc cgtaattcca acaatactac ttataattcc
     8461 gacaataata atttgccaag acaattgatt catttccacg ttaaaacctt gtagcaagtc
     8521 ttttaagtca aaggcaaaaa tgcatataac tgccatcaat acaattaaaa taatctgagt
     8581 cacggcaact gctataacgc ctaaaatttt agcaaaaata tgttggattg gtgaaatact
     8641 tgtaataatc atttcaatga cacgcgatgt tttctcacta gcaatttcca tagctatttg
     8701 agatgcataa tttaaaacaa tgaagaacat tagaaagata atgccataag ctaaagcata
     8761 gttgaaaatc ttttgtcctt ctgatacttt atcgacttca tcattagaaa tcaccttatt
     8821 atcaacttta ctttgtgctt gtaatttttg taagtcttct ttgttgatat ttaattcccc
     8881 ggctaccata tttgtttgaa tagctgtaag cagtgcttgt actttttgtg aatcttcatg
     8941 acttactcgc ttctcactaa tgattgtccc ttgtaacgtg cgattttgat tcaccttgat
     9001 aatataagct ttatcaagtt tatgtttttt tacttctttt tcagcatctt ctatagaaac
     9061 tttagtaaac ttagcatcac tatgaaatgt attcgcctgt tgcttgaaaa ccttatagat
     9121 ttgttcattc ggtgctgcta caccaatttt atctggacca tcatcaaaca tgttaataat
     9181 cttatcaatg ttagataggc caatcattaa ggcagcaata ataatcataa aaattacaaa
     9241 tgatttagct ttaatttttt tgatatatgt caaagtaaat gtcgcccaaa acttatgcat
     9301 ccttgccacc aaccttctca atgaatatat cttgtaatga tggttctaca acttggaatc
     9361 gtttaacata accttgatgt gccacaactt gataaatatc tttggctacg tcttcattct
     9421 caatcgtcaa ctgaagacct tgcttcatgt tttcactatg aatgatgcct ctaatgtttg
     9481 ttaaatctgg tagtgttgtt tctgattcaa tgacaacttt cttgttacca ttagatgcac
     9541 gtacatgatt gatatcacca gaaacaacaa gttgaccttt atctaaaata caaacatcat
     9601 cacataattc ttcaacatgc tccatacggt gagaactata aacgattgta ctgccccaat
     9661 catttaagtc tttaactgct tcttttaata actcaacatt aactgggtct agaccactga
     9721 aaggctcatc taatattagt aattctggtt tatgtaacat acttgctaac agctgaattt
     9781 tttgttgatt cccttttgat agactatcaa ttcgtttttt gcggttttca gtaatatcaa
     9841 aacgctcaag ccaatacgat atttgctgtt gtatttctgt ttttgacatt ccctttaaag
     9901 ttgccaaata tttcaattct tcttcaactg tcaatttccc atgtaaaccg cgttcttccg
     9961 gtaaataacc aatacgattg tacattgttt tatctagttt tttaccgtta tacgtaatgt
    10021 gtccttcagt tggttcactt aagcctaaaa tcatacgaaa tgtcgttgtt ttacctgcac
    10081 catttcttcc tagaaaacct aacattttac ctgattctaa ctttaatgaa atatcattta
    10141 ctgccgtcat cttgccaaaa cgtttcgtaa catgttcaat tacaagtccc atactttgcc
    10201 tcctaaaaaa atatgtattt atcttaatat aacatttcca ttctctataa atgcaatatt
    10261 tttaaaatga atttattttt aaaatttctg aaattgaaaa atttaaatag tgccattttt
    10321 gcatgttaag tatcattagc ac
//
LOCUS       DAMQWL010000335         6869 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.guided.119, whole genome shotgun sequence.
ACCESSION   DAMQWL010000335 DAMQWL010000000
VERSION     DAMQWL010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6869
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.guided.119"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(654..1232)
                     /locus_tag="PF788_002981"
     CDS             complement(654..1232)
                     /locus_tag="PF788_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000690624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDG6305152.1"
                     /translation="MKIGYARVSTGLQNLNLQEDRLNTYGCEKIFNDHMSGSKSKRPG
                     LDKAIEFARSGDTIVVWRLDRLGRNMEDLITLVNELNERGVSFHSLEENITMDKSSST
                     GQLLFHLFAAFAEFERNLILERSSAGRIAARARGRYGGRPEKLNKQDLNLLKTLYDNG
                     TPIKTIAEQWQVSRTTIYRYLNKLEAKENKNK"
     gene            complement(1496..1876)
                     /gene="blaI"
                     /locus_tag="PF788_002982"
     CDS             complement(1496..1876)
                     /gene="blaI"
                     /locus_tag="PF788_002982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001284656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillinase repressor BlaI"
                     /protein_id="HDG6305153.1"
                     /translation="MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKT
                     IRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNF
                     AKNEELNNKEIEELRDILNDISKK"
     gene            complement(1866..3623)
                     /gene="blaR1"
                     /locus_tag="PF788_002983"
     CDS             complement(1866..3623)
                     /gene="blaR1"
                     /locus_tag="PF788_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactam sensor/signal transducer BlaR1"
                     /protein_id="HDG6305154.1"
                     /translation="MAKLLIMSVVSFCFIFLLLVFFRYILKRYFNYSLNYKVWYLTML
                     AGLIPFIPIKFSFIKFNNVNNQAPTVESKSHDLNHNINTTKPIQEFTTDIHKFNWDSI
                     DNICTVIWIVLVIILSFKFLKALLYLKYLKKQSLYLNENEKNKIDTILFNHQYKKNIV
                     IRKAEAIQSPITFWYGKYIILIPSSYFKSVIDKRLKYIILHEYAHAKNRDTLHLIIFN
                     IFSIIMSYNPLVHIVKRKIIHDNEVEADRFVLNNINKNEFKTYAESIMDSVLKTPFSN
                     KNILSHSFNGKKSLLKSRLINIKEADLKKQSKLILIFICIFTFFIMIIQSQFLMGQSL
                     TDYNYKKPLQSDYQILDESKNFGSNSGSFVMYSMKKDKYYIYNEKESRKRYSPDSTYK
                     IYLALFGLDRHIISDKNSRMSWNHKHYLFESWNKEQDLNTAMQNSVNWYFERISNQIP
                     KNYTAAQLKQLNYGNENLGSYKSYWMEDSLKISNLEQVIVFKNMMEQNNHFSKKAKNQ
                     LSSSLLIKKNEKYELYGKAGTGIVNGKYNNGWFVGYVITNHDKYYFATHLSDGNPSGK
                     NAELISEKILKGMGVLNDQ"
     gene            3730..4575
                     /gene="blaZ"
                     /locus_tag="PF788_002984"
     CDS             3730..4575
                     /gene="blaZ"
                     /locus_tag="PF788_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-hydrolyzing class A beta-lactamase
                     BlaZ"
                     /protein_id="HDG6305155.1"
                     /translation="MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALN
                     TKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEK
                     YVGKDITLKELIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIEL
                     NYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKKNKNFLLDLMFNNKNGDTLIKDGVPK
                     DYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKS
                     VMKEF"
     gene            complement(5101..5520)
                     /locus_tag="PF788_002985"
     CDS             complement(5101..5520)
                     /locus_tag="PF788_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000418034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDG6305156.1"
                     /translation="MELDNCINYLLSTSQNRVFKHFKSLLSPYNITPAEYGVLNCLIN
                     SNLNTPKAIGNTLNLEPSTISGILDKMSKKDLITRQTDNENRRTVLINSTNKAKDLWP
                     TLEKKAYQLNNHYFANLTNEETVVFKKILLKINKTTF"
     gene            5644..6615
                     /locus_tag="PF788_002986"
     CDS             5644..6615
                     /locus_tag="PF788_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000481285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDG6305157.1"
                     /translation="MFNAVVVRKSASNVSYKVEKVDESHLSKGDVLVKVVYSSINYKD
                     MLALQYKGGVIRDYPMIPGIDFAGIVESSSNDKFKEGDNVLVTGYDVGVTHTGGFSEY
                     AQVPGEWIVPIPQEMSIKESMVYGTAGFTAALSIFELEKYGMNIKSQPEILVSGATGG
                     VGSVAIQILHKIGYENITAIVRKEKQIEIAKKLGAKQVIIIEDDNKPLKKGIFDYFLD
                     TVGSNVTLYGLKRLNYQGVATVCGNVAGNSLNANILPFILRGIKLIGIDSVYVDHNIR
                     EDIWSKLANEWNIGNSLLYNEIGFEEFYKTIDQLLKGQHLGRTILKV"
     gene            complement(6787..>6869)
                     /locus_tag="PF788_002987"
     CDS             complement(6787..>6869)
                     /locus_tag="PF788_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002495832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type I toxin-antitoxin system Fst family toxin"
                     /protein_id="HDG6305158.1"
                     /translation="FVHIIAPVISGCAVAYYTYWLSKRNK"
BASE COUNT         2400 a          946 c          950 g         2573 t
ORIGIN      
        1 tgttaaaatt atactataaa ttcaactttg caacagaacc tcatttacta tatgggcatc
       61 tctttcatta ttaatacaaa gctttgtatc tccgatatta ggcaaaggtg taaacgaatt
      121 aggtgatact ataggattca acattatatt aatcgtttct ttaataatga ttatcttctt
      181 attttttata aatcgtagta aaaatatctc ctatgattat ataaaagttc aaagaggtga
      241 agccaatgaa taaattagaa aaatggtctt tggtatttat tatttttaca tttctctctt
      301 cattagcact tttatatttc aaatataatt ttagttcggt tatgccagtc ctaagtcttt
      361 ctattttaac tatactaata ttgttgacga gtattattac tgtagtttca gttaatgatg
      421 aagatactta aaacgttcat tagtgaaaca ggtattatat taaaaaagcg tacgaatttg
      481 tacgcttttt tcttgtgtta ttattaaaat ctcataacag gaaaatatta tgagatttta
      541 gacgctgtca gaacgtctct tttacatcga gtgacattga atcaaagtct ttgtatgtta
      601 atgatatata aaattattta gtagattcat tatagtaagc tagattagtt gctctacttg
      661 tttttattct cttttgcctc taatttattg agataacgat aaatagttgt acgtgaaact
      721 tgccactgct ctgcaattgt tttaattggc gtaccattat cataaagtgt cttaagtaag
      781 tttaaatctt gtttatttaa tttttcaggt ctacctccat atcggcctct agcacgtgct
      841 gcaattcgac cggctgatga tcgctctaaa attaaattac gttcaaactc tgcaaatgct
      901 gcgaataaat gaaataataa ttgtcctgta gaacttgatt tatccatcgt tatattttct
      961 tctaaactat gaaaactcac acctcgttcg ttaagttcat taactaacgt gattaaatcc
     1021 tccatgttcc gtcctagtct atctaatctc caaacaacaa tcgtatctcc tgacctcgca
     1081 aattcaattg ctttatctaa accaggtcgc ttactttttg aaccactcat atggtcatta
     1141 aatatctttt cacaaccata tgtatttaat cgatcctcct gtaaattcaa attttgtaat
     1201 ccagttgaaa ctcttgcata acctattttc aaaatacaga cctcctatat acacctttag
     1261 tgtaccataa cttgattacg aggtcttttg tgaacataga ttttttgttg ggtttttgaa
     1321 cacataattc tatgtaatac ttacttattt agacaaaaaa caagagtgta cagaaaatgg
     1381 ttattttctg gacactctca tctttaataa tatattttaa atgtcattaa caaaactaat
     1441 ttaataagag tcaagtatgg tttacatatg tattatgttt gaaacatacc tctaattact
     1501 ttttactaat atcatttaaa atgtctcgca attcttcaat ttctttgtta tttaattctt
     1561 catttttcgc aaaattcagc actaaacttt tcatatcccc tccatacagt ttattaagaa
     1621 aggttttagc agttttcatt ttaatatcgt cttctttaat atttgatgag taaaaataaa
     1681 tattttctga tttgtatcgt tttataatct cttttttata tagtcttgtg attaatgttc
     1741 taatcgtttt atcactaact tctttatatt tttgaatttc aactacaatt tcattagctg
     1801 atactgattt tttatcccat attatattca taacatccca ttcagccata gatatttcaa
     1861 cttgcttatt ggtcatttaa aacacccatt ccttttaata ttttttcact tattaattca
     1921 gcatttttcc cagacgggtt tccatctgat aaatgtgtag caaaataata cttatcatga
     1981 tttgtaatta cgtaacctac aaaccaccca ttattatact tcccgtttac tatacctgta
     2041 cctgctttcc catacagttc atacttttca tttttcttaa tcaataatga agaagataat
     2101 tgattctttg cttttttact aaaatggtta ttttgttcca tcatattttt aaaaactatt
     2161 acttgttcaa gattagatat tttcaaacta tcttccatcc aatagctttt ataacttccc
     2221 aaattttcat taccataatt taattgcttg agttgagccg cagtatagtt ctttggtatt
     2281 tgattactaa tacgttcgaa gtaccaatta actgaatttt gcattgctgt atttaaatct
     2341 tgttccttat tccaagactc gaaaagataa tgtttatgat tccatgacat acgtgaattt
     2401 ttatcactta taatatgacg gtcaagtcca aacagtgcta aataaatttt gtaagttgaa
     2461 tcaggagaat atctttttct actttctttt tcattataaa tatagtattt gtctttcttc
     2521 atgctgtaca taacgaaaga tccactattt gaaccaaaat ttttactttc atctaaaatt
     2581 tggtaatcgc tttgtaaggg ctttttataa ttataatcag ttaaggattg ccccattaaa
     2641 aactggcttt gaattatcat gataaaaaaa gtaaaaatac aaataaaaat tagaattaat
     2701 tttgactgct ttttcagatc ggcttctttt atattaatta atctactttt gagtaatgat
     2761 tttttaccat taaatgaatg gcttaatata tttttgttgg aaaatggggt ttttaatacg
     2821 gagtccataa tagattccgc ataagtttta aattcatttt tgttaatatt attaaggaca
     2881 aatctatcgg cttctacttc attgtcatga attatctttc tttttacaat atgtactaat
     2941 ggattgtaac tcataataat agagaagata ttaaagataa ttaaatgtaa agtatctcta
     3001 tttttagcat gagcatattc atgcagtatt atatatttta gtcttttatc aattacactt
     3061 ttaaaatatg aactaggaat caaaataata tatttcccat accaaaaagt tattggagat
     3121 tgaatagcct ctgcttttcg aatcacaata ttttttttat attgatggtt gaaaagtatc
     3181 gtatctattt tatttttttc attttcgttt agataaagtg actgtttctt taaatattta
     3241 agatataata aggctttcaa aaatttaaaa cttaaaataa taactaaaac tatccaaata
     3301 actgtgcaga tattatcaat tgaatcccaa ttaaacttat ggatatctgt tgtgaactct
     3361 tgaataggtt tggtggtatt tatgttatgg ttcaaatcgt gtgacttact ttcaactgtg
     3421 ggcgcttgat tattcacatt attaaatttt ataaaagaga atttaattgg gataaaagga
     3481 attaatccag caagcatagt tagataccaa actttataat ttaaactata attaaaatag
     3541 cgttttaata tgtacctaaa aaatactaac aatagaaata taaaacaaaa gcttactacg
     3601 ctcattatta gtaatttagc cattttgaca ccttctttca aatatttata ataaacaatt
     3661 gacatcaata ttacaattgt aatattattg atttataaaa attacaactg taatatcgga
     3721 gggtttattt tgaaaaagtt aatattttta attgtaattg ctttagtttt aagtgcatgt
     3781 aattcaaaca gttcacatgc caaagagtta aatgatttag aaaaaaaata taatgctcat
     3841 attggtgttt atgctttaaa tactaaaagt ggtaaggaag taaaatttaa ttcagataag
     3901 agatttgcct atgcttcgac ttcaaaagcg ataaatagtg ctattttgtt agaacaagta
     3961 ccttataata agttaaataa aaaagtacat attaacaaag atgatatagt tgcttattct
     4021 cctattttag aaaaatatgt aggaaaagat atcactttaa aagaacttat tgaggcttca
     4081 atgacatata gtgataatac agcaaacaat aaaattataa aagaaatcgg tggaatcaaa
     4141 aaagttaaac aacgtctaaa agaactagga gataaagtaa caaatccagt tagatatgag
     4201 atagaattaa attactattc accaaagagc aaaaaagata cttcaacgcc tgctgctttc
     4261 ggcaagactt taaataaact tatcgcaaat ggaaaattaa gcaaaaaaaa taaaaatttc
     4321 ttacttgatt taatgtttaa taataaaaac ggagacactt taattaaaga tggtgttcca
     4381 aaagactata aggttgctga taaaagtggt caagcaataa catatgcttc tagaaatgat
     4441 gttgcttttg tttatcctaa gggccaatct gaacctattg ttttagtcat ttttacgaat
     4501 aaagacaata aaagtgataa gccaaatgat aagttgataa gtgaaaccgc caagagtgta
     4561 atgaaggaat tttaatattc taaatgcata ataaatactg ataacatctt atagtttgta
     4621 ttatattttg tattatcgtt gacatgtata attttgatat caaaaactga ttttcccttt
     4681 attattttcg agatttattt tcttaattct ctttaacaaa ctagaaatat tgtatataca
     4741 aaaaatcata aataatagat gaatagttta attataggtg ttcatcaatc gaaaaagcaa
     4801 cgtatcttat ttaaagtgcg ttgctttttt ctcatttata aggttaaata attctcatat
     4861 atcaagcaaa gtgacaatag cattttacaa gtatttttta ttgttcgatt agggtaaacc
     4921 taaataatac ataaattata ttacaatatg tttattatag aggctaaagt atcttagaaa
     4981 tttggatagt aggtttttcg ggaataaaag tatagttggc tttaatatat aattaagcta
     5041 agctatcatt tatatttact cgattataat tcgcacttca acttttttat aacgtaaaaa
     5101 ttaaaacgta gttttattta tctttagtaa tatcttttta aacactacag tttcttcatt
     5161 agttaaatta gcgaagtaat gattattaag ttgataggct ttcttttcta atgttggcca
     5221 taagtctttt gctttatttg tactgtttat tagcacagtt cttctatttt cattatcagt
     5281 ttgacgtgtt attagatcct ttttggacat cttatctaat attccagata ttgttgaagg
     5341 ttctaaattt aaagtattac caatcgcttt aggtgtattc aaattactat taatcaagca
     5401 attcaaaaca ccatattctg ctggagtaat attataggga cttaataaac ttttaaaatg
     5461 tttaaaaact ctattctgag aagtactcaa caaataattt atacaattat ctaattccac
     5521 aactaaaacc tctcttaaat cattagtatt gactcgctta tcatatcatg ataagttttg
     5581 taggaaaata gttttgcaac aaaaacatac ttctacaaaa caattgtgaa agaaggctaa
     5641 taaatgttca atgcggtagt agtgagaaaa agtgcatcaa atgttagtta taaagtagaa
     5701 aaagttgatg aatctcattt atcgaagggt gatgtattag taaaagtggt atactcttca
     5761 ataaattata aggatatgct agctttacaa tataaaggcg gtgtaattag agattatcct
     5821 atgattcctg gtatagattt tgcaggtatt gttgaatcaa gttcgaatga taagtttaaa
     5881 gaaggcgata atgtattagt tactggttat gatgttggcg tgacacatac aggtggattt
     5941 tcagaatatg cacaagtgcc tggagagtgg attgttccta ttccccaaga aatgtctatt
     6001 aaagagtcta tggtatatgg cacagccggt tttacggcag cattatcaat ttttgaacta
     6061 gaaaaatatg gaatgaatat caaatcacaa cctgaaattt tagtgtctgg ggctacaggt
     6121 ggtgtgggca gtgttgctat acaaatttta cataaaattg gatatgaaaa tatcactgct
     6181 atcgtaagaa aagaaaagca aatagaaatc gcaaaaaaat taggtgcaaa acaagtaata
     6241 ataattgaag atgataataa accgcttaaa aaaggtattt ttgattattt cttagataca
     6301 gtggggagta atgtaacatt atacggttta aaacgtctaa attatcaagg tgttgctact
     6361 gtatgtggaa atgtagcagg aaattcactt aacgctaata tattaccgtt tattcttaga
     6421 ggtattaaat taattggcat tgattctgta tatgttgatc ataatatccg tgaagatata
     6481 tggagtaagt tagcaaatga atggaatata ggaaattcac ttctatacaa tgaaattgga
     6541 tttgaagaat tctataaaac gatagatcag cttttaaaag gacaacattt aggaagaact
     6601 attttaaaag tataagtgtg agtattcatt aatacattta ctattaattc aatcattttg
     6661 catttctcta ctaaccagtg ttataattta tataacgaaa atgattaaca attaatgcac
     6721 caatccccac actattgcag tagtgtgggg attttttcga tgctggctta taaagtcgcc
     6781 tattaattat ttgttgcgtt tactaagcca ataagtataa tacgcaacag cacagccact
     6841 gatgactggt gctatgatgt gaacgaaaa
//
LOCUS       DAMQWL010000336         6010 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.guided.135, whole genome shotgun sequence.
ACCESSION   DAMQWL010000336 DAMQWL010000000
VERSION     DAMQWL010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 6010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6010
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.guided.135"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            311..1267
                     /locus_tag="PF788_002988"
     CDS             311..1267
                     /locus_tag="PF788_002988"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDG6305159.1"
                     /translation="MLNSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLS
                     KGFPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYNNNIWNEWAFENYIKSDEYKGP
                     DMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDKD
                     GNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQL
                     YQRSADIFLGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLA
                     RESFNPPTLKINSDKSIFDINYEDLEIVDYESHPAIKAPIAV"
     gene            1467..1946
                     /locus_tag="PF788_002989"
     CDS             1467..1946
                     /locus_tag="PF788_002989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HDG6305160.1"
                     /translation="MTLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMG
                     RKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIEDIYQLPGHVFIFGGQTLFEEM
                     IDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK"
     gene            1961..2800
                     /gene="fakB2"
                     /locus_tag="PF788_002990"
     CDS             1961..2800
                     /gene="fakB2"
                     /locus_tag="PF788_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid kinase binding subunit FakB2"
                     /protein_id="HDG6305161.1"
                     /translation="MTKQIIVTDSTSDLSKEYLEANNIHVIPLSLTIEGASYVDQVDI
                     TSEEFINHIENDEDVKTSQPAIGEFISAYEELGKDGSEIISIHLSSGLSGTYNTAYQA
                     SQMVDANVTVIDSKSISFGLGYQIQHLVELVKEGVSTSEIVKKLNHLRENIKLFVVIG
                     QLNQLIKGGRISKTKGLIGNLMKIKPIGTLDDGRLELVHNARTQNSSIQYLKKEIAEF
                     IGDHEIKSIGVAHANVIEYVDKLKKVFNEAFHVNNYDINVTTPVISAHTGQGAIGLVV
                     LKK"
     gene            2886..3419
                     /gene="msrA"
                     /locus_tag="PF788_002991"
     CDS             2886..3419
                     /gene="msrA"
                     /locus_tag="PF788_002991"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDG6305162.1"
                     /translation="MTKEYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYE
                     QVCTNQTGHVEAVQITFDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYH
                     DEHQKKAAEFKKQQLNEQGIFKKPVITPIKPYKNFYPAEDYHQDYYKKNPVHYYQYQR
                     GSGRKAFIESHWGNQNA"
     gene            3412..3840
                     /gene="msrB"
                     /locus_tag="PF788_002992"
     CDS             3412..3840
                     /gene="msrB"
                     /locus_tag="PF788_002992"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDG6305163.1"
                     /translation="MLKKDKSELTDIEYIVTQENGTEPPFMNEYWNHFAKGIYVDKIS
                     GKPLFTSEEKFHSECGWPSFSKALDDDEIIELVDKSFGMLRTEVRSEESNSHLGHVFN
                     DGPKESGGLRYCINSAAIQFIPYEKLEELGYGDLISHFDK"
     gene            3852..4352
                     /locus_tag="PF788_002993"
     CDS             3852..4352
                     /locus_tag="PF788_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDG6305164.1"
                     /translation="MFKKLFGKGKEVQKDIAIYAPLTGEFVKIEDIPDPVFAQKMMGE
                     GFGINPTEGEVVSPIAGRVDNVFPTKHAIGLKADNGLELLVHIGLDTVQLDGEGFEVL
                     VSSGDEVNVGDPLVRFNLEYINNNAKSVISPIIITNTDQAASINIYDENAVIKGETKV
                     IDVTMN"
     gene            4352..4573
                     /locus_tag="PF788_002994"
     CDS             4352..4573
                     /locus_tag="PF788_002994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YozE family protein"
                     /protein_id="HDG6305165.1"
                     /translation="MKNYSFYQFVMTVRGRHDDKGRLAEEIFDDLAFPKHDDDFNILS
                     DYIETHGDFTLPMSVFDDLYEEYTEWLKF"
     gene            4765..>6010
                     /locus_tag="PF788_002995"
     CDS             4765..>6010
                     /locus_tag="PF788_002995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDG6305166.1"
                     /translation="MDDKQHTSSSDDERAEIATSNQDQETNSSKRVHLKRWQFISILI
                     GTILITAVITVVAYIFINQKISGLNKTDQANLNKIENVYKILNSDYYKKQDSDKLSKA
                     AIDGMVKELKDPYSEYLTKEQTKSFNEGVSGDFVGIGAEMQKKNDQIMVTSPMKGSPA
                     ERAGIRPKDVITKVNGKSIKGKALDEVVKDVRGKENTEVTLTVQRGSEEKDVKIKREK
                     IHVKSVEYKKKGKVGVITINKFQNDTSGELKDAVLKAHKDGLKKIVLDLRNNPGGLLD
                     EAVKMANIFIDKGKTVVKLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASASEVF
                     TGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD
                     VTIDTPKYQSLNVIPNTKTFKVG"
BASE COUNT         2253 a          852 c         1078 g         1827 t
ORIGIN      
        1 caactatatt ttctagaaat ttaactgttt taataggaca tcaaacataa tattcaaatc
       61 atgtgttaac ctctttttta aaatttttta gcattaaagt tatagatttg ggtaaacaat
      121 taccaattgg aaacatatat cacgttacga tggggtaggt acttaatcag cattttataa
      181 ataaagtaac ggaattcatg atattaatat catattccta aaatgagtga taacaaaatg
      241 ctacataaag ttaagttata tcaaactaaa tatacatact ataaataatg aaaatgaggt
      301 gttatcgcat atgttgaatt catttgatgc agcatatcac agtctttgtg aagaagtttt
      361 agaaatagga aatacacgaa atgatcgcac aaatacaggt acgatttcga aatttggtca
      421 tcaacttcgc tttgacttat ctaaaggatt tccactatta acgacaaaga aagtttcttt
      481 taaattagta gcaaccgaat tattatggtt cattaaagga gatacaaaca tccaatactt
      541 attaaaatat aataataata tatggaacga atgggctttt gaaaattata tcaaatcaga
      601 cgagtataaa ggtccagata tgacagattt cgggcatcgt gcattgagtg atcctgaatt
      661 taacgaacaa tataaagaac aaatgaaaca atttaagcaa cgtattcttg aagatgatac
      721 atttgcgaag caattcgggg atttaggaaa tgtttatggt aaacaatggc gagattgggt
      781 tgataaagat ggtaatcatt ttgatcaact taaaacagta attgaacaaa ttaagcataa
      841 tccagattca aggcgacaca tcgtatctgc atggaatcca acagaaattg atacaatggc
      901 acttccgcct tgtcatacca tgttccagtt ttatgtccaa gatggtaagt taagttgcca
      961 gttataccaa cgtagcgcag atatcttttt aggtgtgcca tttaatatcg caagctacgc
     1021 tttattgaca caccttattg ccaaagaatg tggacttgaa gtgggtgaat ttgtgcatac
     1081 atttggagat gcacatattt attcaaatca tattgatgcg attcaaacac aattagcacg
     1141 tgaaagcttc aatcctccaa cattaaaaat taacagtgac aagtctattt tcgacataaa
     1201 ttatgaagat ttggaaattg ttgactatga atcacatcca gcaataaaag ctccaatagc
     1261 agtgtagtca ttgcatagtt agctaaccat atagacatca aaatgacatc atagtatttt
     1321 caagtgcaaa aaagtacttt tttgtgttaa acgttttcat aaattatgca aaatcattat
     1381 ttctatcaca ctttatgata aaaattgtgt taaattaaag ataacttagt aataaaaaat
     1441 gaaatgatag aagaaggagg ataattatga ctttatccat tctagttgca catgacttgc
     1501 aacgagtaat tggttttgaa aatcaattac cttggcacct accaaatgat ttgaagcatg
     1561 ttaaaaaatt atcaacaggt catactttag taatgggtcg taagacattt gaatcgattg
     1621 gtaaaccact accgaatcgt cgaaatgttg tacttacttc agatacaagt ttcaacgtag
     1681 agggcgttga tgtaattcac tctattgaag atatttacca actaccgggc catgttttca
     1741 tatttggagg gcaaacatta tttgaagaaa tgattgataa agtggacgac atgtatatta
     1801 ctgttattga aggtaaattc cgtggtgata cgttctttcc accttataca tttgaagact
     1861 gggaagttgc ctcttcagtt gaaggtaaac tagatgagaa aaatacaatt ccacatacct
     1921 ttctacattt aattcgtaaa aaataagggg gaaaacgacc atgacaaaac agattatagt
     1981 aacagactca acatccgatt tatctaaaga atacttagaa gcaaacaaca ttcatgtaat
     2041 tcctttaagt ttaactattg aaggagcttc atacgttgac caagtagata ttacatcaga
     2101 agaatttatt aatcatattg aaaatgatga agatgtaaag acaagtcagc cagccatagg
     2161 tgaatttata tctgcttatg aagaactagg aaaagatggc tctgaaatca taagtattca
     2221 tctttcttca ggattaagtg gtacatataa cactgcttac caagcaagtc aaatggtaga
     2281 tgctaatgta actgttattg attcaaaatc tatttctttt ggtttagggt atcaaataca
     2341 acacctagta gagcttgtaa aagaaggtgt ctcaacttct gaaatagtta aaaagttaaa
     2401 tcatttaaga gaaaacatta aattatttgt agttataggg caattgaatc aattaattaa
     2461 aggtggcaga attagtaaaa caaaaggttt gattggtaat cttatgaaaa ttaaaccaat
     2521 tggtacacta gatgatggtc gcttagagct tgtgcacaat gcgagaactc aaaattctag
     2581 tatccaatac ttgaaaaagg aaattgctga atttatagga gatcatgaaa tcaaatccat
     2641 tggtgtcgca catgctaacg tcattgaata tgttgataaa ttgaagaaag tttttaatga
     2701 agcttttcat gtgaataatt acgatataaa tgtaactaca ccagttattt ctgcacatac
     2761 tggtcaaggt gcgattggcc tcgtagtcct taagaagtaa atttaatctt ttcagtgtta
     2821 attacttcca tttcaatcct ttatagacta aatttataat tagatagata gaggaggtaa
     2881 ttcatatgac aaaagaatat gcaacattag caggaggatg tttctggtgc atggttaaac
     2941 catttacatc atatccaggc atcaagtcag tcgtatctgg ttatagtggc ggtcatgttg
     3001 acaacccaac ttatgaacag gtatgtacga atcaaaccgg ccatgtcgaa gcagtacaaa
     3061 ttacgtttga tccagaggtt acttcctttg aaaatatatt agacatatat ttcaaaacat
     3121 ttgacccaac tgatgatcaa gggcaatttt tcgatagagg cgaaagctat caaccagtca
     3181 ttttctatca tgatgaacat cagaaaaagg ctgctgagtt taaaaagcaa caattaaatg
     3241 aacaaggtat tttcaagaaa ccagtgatta cacctattaa accatataaa aatttctatc
     3301 cagctgaaga ctaccatcaa gattattaca aaaagaaccc ggtacattat taccaatatc
     3361 aacgtggttc aggtagaaaa gcgtttatag aatcacattg ggggaatcaa aatgcttaaa
     3421 aaagataaaa gtgaactaac agatatagaa tatattgtta cacaagaaaa cggcactgaa
     3481 ccaccattta tgaatgaata ttggaatcat tttgctaaag gaatttatgt agataaaatt
     3541 tctggtaaac ctttatttac atctgaagaa aagtttcatt ctgaatgtgg atggcctagc
     3601 ttttccaaag cgcttgatga cgatgaaatt atagaattag tcgacaaatc atttggtatg
     3661 ttgagaactg aagtgcgttc agaagaatca aatagtcatt taggacatgt ctttaatgat
     3721 ggacctaaag aaagtggcgg cttaagatac tgtatcaatt ccgctgcaat tcaatttatt
     3781 ccatatgaaa agttagaaga attgggttat ggcgatttaa tatcacattt tgataagtag
     3841 gagtggaaag tatgtttaaa aaattattcg gaaaaggcaa agaagttcag aaagatatcg
     3901 caatttatgc accattaact ggagaattcg tgaaaattga agatattcca gatcctgtat
     3961 tcgcacaaaa aatgatgggc gaaggttttg gtattaatcc aactgaagga gaagttgtgt
     4021 ctccaattgc aggacgtgtt gacaatgtct ttccaactaa gcatgcgatt gggttaaaag
     4081 cagataacgg attagaatta ttagttcata tcggtttaga cacagttcaa ttagacggtg
     4141 aaggatttga agtgttagtg tctagtggtg acgaagttaa cgtcggagat ccattagtaa
     4201 gattcaacct tgaatatatt aataataacg ctaaatctgt aatttcacca attataatta
     4261 ctaacactga tcaagcagct tcaattaata tttatgatga aaatgctgtg attaaaggtg
     4321 aaacaaaagt gattgatgtg acaatgaact aatgaaaaac tattcgtttt atcaatttgt
     4381 catgacagtt cgtggtcgac acgacgataa aggtcgtcta gcagaagaga tatttgacga
     4441 tcttgctttc ccaaaacacg atgatgattt taacatactg tctgattata ttgagacaca
     4501 tggtgatttc acattgccaa tgtctgtatt tgatgattta tatgaagaat atacggaatg
     4561 gctaaaattt taatataatt tttaataata atagttagaa ccagggtgat gcaattcgtt
     4621 atcctggttt taatttaaaa taaactaagt tgtgactaaa aattaatcaa ttatagtgaa
     4681 atatggtgcg ctatcttgca taaattgata tgattaacta cacagaattt aaaagtacat
     4741 aatacataat aaggaagtga tacaatggat gataagcaac acacatcttc atccgatgat
     4801 gaacgcgctg aaattgcaac aagcaatcaa gaccaagaaa ctaattcatc gaaacgcgtt
     4861 cacttaaaac gttggcaatt catatcaata ttaattggta caatcctaat aacagctgtc
     4921 atcacagttg ttgcatatat ttttataaat caaaaaataa gtggtttaaa caaaactgat
     4981 caagcaaact taaataaaat tgaaaatgtg tataaaatct taaatagtga ttattacaaa
     5041 aaacaggact ctgacaagtt aagtaaagct gcaattgatg gcatggtcaa agaattaaaa
     5101 gatccttatt ctgaatattt aacaaaagaa caaacgaaat cctttaatga aggtgtttca
     5161 ggtgattttg taggtattgg tgcagaaatg caaaagaaaa atgatcaaat tatggttact
     5221 agtcctatga agggatctcc agcagaacgt gctggcattc gtcctaaaga tgtcattact
     5281 aaagtaaatg gaaaatcaat taaaggtaaa gcattagatg aagttgtcaa agatgttcgt
     5341 ggtaaagaaa acactgaagt cactttaact gttcaacgag gtagtgaaga aaaagacgtt
     5401 aagattaaac gtgaaaaaat tcatgttaaa agtgttgagt ataagaaaaa aggtaaagtt
     5461 ggagttatta ctattaataa attccagaat gatacatcag gtgaattgaa agatgcagtt
     5521 ctaaaagctc acaaagatgg tttgaaaaag attgttttag atttaagaaa taatccaggt
     5581 ggactactag atgaagctgt taaaatggca aatattttta tcgataaagg aaaaactgtt
     5641 gttaaactag aaaaaggtaa agatactgaa gcaattcaaa cttctaatga tgcgttaaaa
     5701 gaagcgaaag acatggatat atccatctta gtgaatgaag gttcagctag cgcttctgaa
     5761 gtgtttactg gtgcgctaaa agactataat aaagctaaag tttatgggtc aaaaacattc
     5821 ggcaaaggtg tcgtacaaac tacaagagag tttaaggatg gttcattgtt aaaatatact
     5881 gaaatgaaat ggttaacgcc agatggtcat tatattcacg gtaaaggcat taaaccagac
     5941 gttactattg acacacctaa atatcaatct ttaaatgtca ttcctaatac gaaaacattt
     6001 aaagttggag
//
LOCUS       DAMQWL010000337         5426 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.guided.145, whole genome shotgun sequence.
ACCESSION   DAMQWL010000337 DAMQWL010000000
VERSION     DAMQWL010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 5426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5426
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.guided.145"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..761)
                     /locus_tag="PF788_002996"
     CDS             complement(<1..761)
                     /locus_tag="PF788_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000952924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HDG6305167.1"
                     /translation="MLSSFLMLSIISSLLTICVIFLVRMLYIKYTQNIMSHKIWLLVL
                     VSTLIPLIPFYKISNFTFSKDMMNRNVSDTTSSVSHMLDGQQSSVTKDLAINVNQFET
                     SNITYMILLIWVFGSLLCLFYMIKAFRQIDVIKSSSLESSYLNERLKVCQSKMQFYKK
                     HITISYSSNIDNPMVFGLVKSQIVLPTVVVETMNDKEIEYIILHELSHVKSHDLIFNQ
                     LYVVFKMIFWFNPALYISKTMMDNDCEKVCDRNVL"
     gene            858..2867
                     /gene="mecA"
                     /locus_tag="PF788_002997"
     CDS             858..2867
                     /gene="mecA"
                     /locus_tag="PF788_002997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001801873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBP2a family beta-lactam-resistant peptidoglycan
                     transpeptidase MecA"
                     /protein_id="HDG6305168.1"
                     /translation="MMKKIKIVPLILIVVVVGFGIYFYASKDKEINNTIDAIEDKNFK
                     QVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVDAQYKI
                     KTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQSIHIENLKSERGKILDRNN
                     VELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTV
                     KKMDEYLSDFAKKFHLTTNETESRNYPLGKATSHLLGYVGPINSEELKQKEYKGYKDD
                     AVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQ
                     KSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPL
                     LNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVV
                     NGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKN
                     LDNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISK
                     ENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETGRQIGWFISYDKD
                     NPNMMMAINVKDVQDKGMASYNAKISGKVYDELYENGNKKYDIDE"
     gene            complement(2913..3341)
                     /locus_tag="PF788_002998"
     CDS             complement(2913..3341)
                     /locus_tag="PF788_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000872606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HDG6305169.1"
                     /translation="MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAE
                     QSRFKGIIASGMHTLSISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAE
                     ITNKKSIKKENGLVTVSLSTYNENEEIVFKGEVTALINNS"
     gene            complement(3438..4181)
                     /locus_tag="PF788_002999"
     CDS             complement(3438..4181)
                     /locus_tag="PF788_002999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphoryl diester phosphodiesterase"
                     /protein_id="HDG6305170.1"
                     /translation="MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDE
                     QLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANE
                     YNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIM
                     PQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVN
                     KPARANQLANWGVDGIFTDNADKMVHLSQ"
     gene            complement(5018..5389)
                     /locus_tag="PF788_003000"
                     /pseudo
     CDS             complement(5018..5389)
                     /locus_tag="PF788_003000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016912861.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase family
                     protein"
BASE COUNT         1910 a          881 c          796 g         1839 t
ORIGIN      
        1 tttaaaacgt ttctatcaca tactttttca cagtcattgt ccatcattgt tttacttata
       61 tatagtgcag gattaaacca gaatatcatt ttaaaaacaa cataaagctg gttgaatatt
      121 aagtcatgac ttttcacatg tgatagttca tgtagaataa tatattcaat ttctttgtca
      181 ttcatggttt cgactacgac agttggtagt acaatttggg atttcactaa accaaatacc
      241 atcggattat caatgtttga actataacta attgttatat gctttttgta gaactgcatc
      301 ttactttgac atactttaag tcgttcatta agatatgacg attccaatga cgaactttta
      361 ataacatcaa tttgtcggaa tgccttaatc atataaaata agcacaacaa actaccaaat
      421 acccatatca aaagaatcat atacgttata tttgaggtct caaactgatt aacattaatt
      481 gctaagtctt tcgtaacaga tgattgttga ccatctaaca tatgactaac cgaagaagtc
      541 gtgtcagata catttcgatt catcatatct tttgaaaatg taaaattcga tattttgtaa
      601 aatggtatta atggaattaa cgtggagacg agcactaata accaaatctt atgtgacata
      661 atattttgag tatattttat atagagcatt ctcactaaaa aaattacaca tatcgtgagc
      721 aatgaactga ttatacttaa cattaaaaaa gatgataaca ccttctacac ctccatatca
      781 caaaaattat aacattattt tgacataaat actacatttg taatatacta caaatgtagt
      841 cttatataag gagtatattg atgaaaaaga taaaaattgt tccacttatt ttaatagttg
      901 tagttgtcgg gtttggtata tatttttatg cttcaaaaga taaagaaatt aataatacta
      961 ttgatgcaat tgaagataaa aatttcaaac aagtttataa agatagcagt tatatttcta
     1021 aaagcgataa tggtgaagta gaaatgactg aacgtccgat aaaaatatat aatagtttag
     1081 gcgttaaaga tataaacatt caggatcgta aaataaaaaa agtatctaaa aataaaaaac
     1141 gagtagatgc tcaatataaa attaaaacaa actacggtaa cattgatcgc aacgttcaat
     1201 ttaattttgt taaagaagat ggtatgtgga agttagattg ggatcatagc gtcattattc
     1261 caggaatgca gaaagaccaa agcatacata ttgaaaattt aaaatcagaa cgtggtaaaa
     1321 ttttagaccg aaacaatgtg gaattggcca atacaggaac agcatatgag ataggcatcg
     1381 ttccaaagaa tgtatctaaa aaagattata aagcaatcgc taaagaacta agtatttctg
     1441 aagactatat caaacaacaa atggatcaaa attgggtaca agatgatacc ttcgttccac
     1501 ttaaaaccgt taaaaaaatg gatgaatatt taagtgattt cgcaaaaaaa tttcatctta
     1561 caactaatga aacagaaagt cgtaactatc ctctaggaaa agcgacttca catctattag
     1621 gttatgttgg tcccattaac tctgaagaat taaaacaaaa agaatataaa ggctataaag
     1681 atgatgcagt tattggtaaa aagggactcg aaaaacttta cgataaaaag ctccaacatg
     1741 aagatggcta tcgtgtcaca atcgttgacg ataatagcaa tacaatcgca catacattaa
     1801 tagagaaaaa gaaaaaagat ggcaaagata ttcaactaac tattgatgct aaagttcaaa
     1861 agagtattta taacaacatg aaaaatgatt atggctcagg tactgctatc caccctcaaa
     1921 caggtgaatt attagcactt gtaagcacac cttcatatga cgtctatcca tttatgtatg
     1981 gcatgagtaa cgaagaatat aataaattaa ccgaagataa aaaagaacct ctgctcaaca
     2041 agttccagat tacaacttca ccaggttcaa ctcaaaaaat attaacagca atgattgggt
     2101 taaataacaa aacattagac gataaaacaa gttataaaat cgatggtaaa ggttggcaaa
     2161 aagataaatc ttggggtggt tacaacgtta caagatatga agtggtaaat ggtaatatcg
     2221 acttaaaaca agcaatagaa tcatcagata acattttctt tgctagagta gcactcgaat
     2281 taggcagtaa gaaatttgaa aaaggcatga aaaaactagg tgttggtgaa gatataccaa
     2341 gtgattatcc attttataat gctcaaattt caaacaaaaa tttagataat gaaatattat
     2401 tagctgattc aggttacgga caaggtgaaa tactgattaa cccagtacag atcctttcaa
     2461 tctatagcgc attagaaaat aatggcaata ttaacgcacc tcacttatta aaagacacga
     2521 aaaacaaagt ttggaagaaa aatattattt ccaaagaaaa tatcaatcta ttaactgatg
     2581 gtatgcaaca agtcgtaaat aaaacacata aagaagatat ttatagatct tatgcaaact
     2641 taattggcaa atccggtact gcagaactca aaatgaaaca aggagaaact ggcagacaaa
     2701 ttgggtggtt tatatcatat gataaagata atccaaacat gatgatggct attaatgtta
     2761 aagatgtaca agataaagga atggctagct acaatgccaa aatctcaggt aaagtgtatg
     2821 atgagctata tgagaacggt aataaaaaat acgatataga tgaataacaa aacagtgaag
     2881 caatccgtaa cgatggttgc ttcactgttt tattatgaat tattaataag tgctgttact
     2941 tctcccttaa atacaatttc ttcattttca ttgtatgttg aaagtgacac tgtaacgagt
     3001 ccattttctt tttttatgga tttcttattt gtaatttcag cgataacgta caatgtatta
     3061 cctgggtata caggtttaat aaatttaacg ttattcattt gtgttcctgc tacaacttct
     3121 tctccgtatt taccttcttc tacccataat ttaaatgata ttgaaagtgt atgcatgcca
     3181 gatgcaatga tacctttaaa tctactttgt tctgcttttt ctttatctat atgcatatat
     3241 tgaggatcaa aagttgttgc aaattggata atttcttctt ctgtaatatg aaggcttttt
     3301 gttttgaatg tttctcctac tataaaatca tcgtatttca tatatgtctc tctttcttat
     3361 tcaaattaat tttttagtat gtaacatgtt aaaggtaagt ctaccgtcac tgaaacgtaa
     3421 gactcacctc taactttcta ttgagacaaa tgcaccattt tatctgcatt gtctgtaaag
     3481 ataccatcaa ctccccaatt agcaagttgg tttgcacgtg ctggtttgtt tacagtccat
     3541 acgttcaatt cataacccgc ttcttttacc atttttactt ttgctttagt aagtttggca
     3601 tcttcagtgt ttactatttt agcattacag taatctaaaa gtgttctcca gtcttcacga
     3661 aacgaagttg tatggaatat aactgctctg ttatattgtg gcatgatttc ttctgcaagt
     3721 ttaacaagca caacattaaa gcttgaaatg agcacttctt gattctgatt taagtttgtt
     3781 aattgttctt ccacttgctt aaccatactt ttagaaagtg ctagtccatt cggtccagta
     3841 atacctttta attctacatt taaattcata ttatattcat ttgctatttt tactacatca
     3901 tcgaaagttg gcaaatgttc atctttgaat ttttcaccaa accaagatcc tgcagaagca
     3961 tctttaattt catcataatt caattcagtt atttccccgg acatatttgt agtccgttct
     4021 aaataatcat catgaatgat aatcagttgt tcatcttttg taattgcaac atctaactcc
     4081 aaccagttta taccttctac ttctgaagca gctttaaatg atgcaattgt attttccgga
     4141 gctttactag gtaatcctct atgtccatat acagttagca tattacctct ccttgcattt
     4201 ttattttttt aattaacgta actgtattat cacattaatc gcacttttat ttccattaaa
     4261 aagagatgaa tatcataaat aaagaagtcg atagattcgt attgattatg gagttaatct
     4321 acgtctcatc tcatttttaa aaaatcattt atgtcccaag ctccattttg taatcaagtc
     4381 tagtttttct gtacccctta tctgcaattt tacttaggat tgcttttaac ttacccctta
     4441 tcagcaattt tactgagaac tgcttttaac gcacctctta tctgcaattt tgcctagaac
     4501 tgcttttaac gtacctctta tctgcaattt tactgagaac tgcttttaac ttacccctta
     4561 tcagcaattt tgcatggaat tgcttttaac gtacctctta tctgcaattt tacttagaac
     4621 tgcttttaac aaacctctta tctgcaattt tactgagaac tgcttttaac gtacctctta
     4681 tctgtaattt tactgagaac tgcttttaac aaacctctta tctgcaattt tacttagaat
     4741 tgcttttact attcctctta ttagtataat ctcagtaaga atgcgtataa aaatgaaaat
     4801 tacaaccgat tttgtaagtg ctgacgcctg agggaatagt atgtgcgaga gactaatggc
     4861 tcgagccata cccctaggca agcatgcacg tacaaaatcg taagataaaa aaataagcat
     4921 atcactgtaa actttaaaaa atcagtttag tgatatgctt atttatttcg agttaggatt
     4981 tatgtcccaa gctcatcaag cacaatcggc cactagttta tttctctatc ttatatgttc
     5041 tgatatggtc ttctatactg tataagtata cttttgaata tggatcttgt gtcaattcac
     5101 gttcgaaatc aaattcttga ttatcaaatc tgttaaagaa tgtttcgtat tcttcgactg
     5161 ataattgctc tctagattct agcatattta agtgtttctc tttatctaat gctttgtcat
     5221 atcctttaac gattgaacca ctaaagattt ctcctactgc tcctgaacca taactaaata
     5281 gacatacttt ctcttctggt tggaatgtgt ggttctgtaa taacgaaatt aaacttaagt
     5341 ataatgatcc tgtataaatg ttaccaacat ctctattcca taatacggtt ctgttgcaaa
     5401 gttgaattta tagtataatt ttaaca
//
LOCUS       DAMQWL010000338         4348 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.guided.165, whole genome shotgun sequence.
ACCESSION   DAMQWL010000338 DAMQWL010000000
VERSION     DAMQWL010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4348
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.guided.165"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            485..1951
                     /gene="msr(A)"
                     /locus_tag="PF788_003001"
     CDS             485..1951
                     /gene="msr(A)"
                     /locus_tag="PF788_003001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002447408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein Msr(A)"
                     /protein_id="HDG6305171.1"
                     /translation="MEQYTIKFNQINHKLTDLRSLNIGHLYAYQFEKIALIGGNGTGK
                     TTLLNMIAQKTKPESGTVETVGEIQYFEQLNMDVENDFNTLDGSLMSELHIPMHTTDS
                     MSGGEKAKYKLANVISNYSPILLLDEPTNHLDKIGKDYLKNILKYYYGTLIIVSHDRA
                     LIDQIADTIWDIQEDGTIRVFKGNYTQYQNQYEQEQLEQQRQYEQYISEKQRLSQASK
                     AKRNQAQQMAQASSKQKNKSIAPDRLSASKQKGTVEKAAQKQAKHIEKRMEHLEEVEK
                     PQSYHEFNFPQNKIYDIHNNYPIIAQNLTLVKGSQKLLTQVRFQIPYGKNIALVGANG
                     VGKTTLLEAIYHQIEGIDCSPKVQMAYYRQLAYEDMRDVSLLQYLMDETDSSESFSRA
                     ILNNLGLNEALDRSCNVLSGGERTKLSLAVLFSTKANMLILDEPTNFLDIKTLEALEM
                     FMNKYPGIILFTSHDTRFVKHVSDKKWELTGQSLHDIT"
     gene            2050..2949
                     /locus_tag="PF788_003002"
     CDS             2050..2949
                     /locus_tag="PF788_003002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000196697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mph(C) family macrolide 2'-phosphotransferase"
                     /protein_id="HDG6305172.1"
                     /translation="MTRHNEIIKCAEKYQLHIQPQTISLNESGLDFQVAFGKDKHGVE
                     WVLRLPRRPDVYKRTKPEKQTVDFLQKNVSFEIPKWKVHAKDLIAYPKLTGKPAATID
                     PEIQNYVWEIEHKPLPENFINTLAETLVDLHNIPEENINVQHINIKTIQEIKNDFQRR
                     MNKVKETYGVSDELWNRWKQWLENDELWPRHATMIHGDLHPGHIMVDNQANVTGLIDW
                     TEATHSDPSMDFIGHHRVFDDEGLEQLITAYGKAGGEIWPRMKEHIIELNAVFPMFIA
                     EFAMESGESAYETMALKELGMKE"
     gene            3435..4043
                     /locus_tag="PF788_003003"
     CDS             3435..4043
                     /locus_tag="PF788_003003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002474535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDG6305173.1"
                     /translation="MIIGYARVSSIDQNLERQLDNLKTFGVEKIFTEKQSGKSVENRP
                     VFQEALNFVRMGDRFVVESIDRLGRNYDEIIETVNYLKEKDVQLMITSLPMMNEVIGN
                     PLLDKFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSPNAKDPQ
                     KRVIYHRVVEMLEEGKAISKIAKEVNITRQTVYRIKHDKGLS"
BASE COUNT         1720 a          619 c          730 g         1279 t
ORIGIN      
        1 aaatagttca tacagaagac tcctttttgt taaaattata ttataaattc aactttgcaa
       61 cagaaccgta ttttatgagt acactctaaa ttaaggagat gtataatcaa tctaaaattg
      121 tatttttata cttttgttat ataatctttc tacttagaga tatattgtaa aaaaaccaac
      181 aaaatgttat attaacatta ctattttatc gatgaaggag gattaaaatg acagcttcta
      241 tgagactcaa ataaaccttt ttgaatacaa aactaaatta attcaaaaag gcttgtccgc
      301 aatacacact cataggatga cttatgtcat tttttatcct tcgataggaa taataaacgc
      361 tttcaaatac taaaacatca taataaattt ttaagtgttt gaaagtgtaa tgtgaatgag
      421 acgggagtag cctgtctcat ttttttgcgt acacgtcctt taaatataca aggagtgtat
      481 aaatatggaa caatatacaa ttaaatttaa ccaaatcaat cataaattga cagatttacg
      541 atcacttaac atcggtcatc tttacgctta ccaatttgaa aaaatagcac ttattggggg
      601 taatggtact ggcaaaacca cattactaaa tatgattgct caaaaaacaa aaccagaatc
      661 tggaacagtt gaaacggttg gcgaaattca atattttgaa cagcttaaca tggatgtgga
      721 aaatgatttt aacacgttag acggtagttt aatgagtgaa ctccatatac ctatgcatac
      781 aaccgacagt atgagtggtg gtgaaaaagc aaaatataaa ttagctaatg tcatatcaaa
      841 ttatagtccg atattacttt tagatgaacc tacaaatcac ttggataaaa ttggtaaaga
      901 ttatctgaaa aatattttaa aatattacta tggtacttta attatagtaa gtcatgatag
      961 agcacttata gaccaaattg ctgacacaat ttgggatata caagaagatg gcacaataag
     1021 agtgtttaaa ggtaattaca cacagtatca aaatcaatat gaacaagaac agttagaaca
     1081 acaacgtcaa tatgaacagt atataagtga aaaacaaaga ttgtcccaag ccagtaaagc
     1141 taaacgaaat caagcgcaac aaatggcaca agcatcatca aaacaaaaaa acaaaagtat
     1201 agcaccagat cgtttaagtg catcaaaaca aaaaggcacg gttgagaagg ctgctcaaaa
     1261 acaagctaag catattgaaa aaagaatgga acatttggaa gaagttgaaa aaccacaaag
     1321 ttatcatgaa ttcaatttcc cacaaaataa aatttatgat atccataata attatccaat
     1381 cattgcacaa aatctaacat tggttaaagg aagtcaaaaa ctgctaacac aagtacgatt
     1441 ccaaatacca tatggcaaaa atatagcgct cgtaggtgca aatggtgtag gtaagacaac
     1501 tttacttgaa gctatttacc accaaataga gggaattgat tgttctccta aagtgcaaat
     1561 ggcatactat cgtcaacttg cttatgaaga catgcgtgac gtttcattat tgcaatattt
     1621 aatggatgaa acggattcat cagaatcatt cagtagagct attttaaata acttgggttt
     1681 aaatgaagca cttgatcgtt cttgtaatgt tttgagtggt ggggaaagaa cgaaattatc
     1741 gttagcagta ttattttcaa cgaaagcgaa tatgttaatt ttggatgaac caactaattt
     1801 tttagatatt aaaacattag aagcattaga aatgtttatg aataaatatc ctggaatcat
     1861 tttgtttaca tcacatgata caaggtttgt taaacatgta tcagataaaa aatgggaatt
     1921 aacaggacaa tctcttcatg atataactta aaaactatac actaatttat attgaatatt
     1981 aggttcattt atatcaatat aaaaaatacg ttcacaagaa aaatataata gaaataagga
     2041 tccaataaaa tgactcgaca taatgaaatt attaaatgtg cagaaaaata tcaattacac
     2101 atccaacctc aaacaatctc attgaatgaa tcgggacttg attttcaagt tgcatttgga
     2161 aaagataaac atggagtaga atgggttttg agactaccaa gaagacctga cgtttataaa
     2221 cgaacaaaac ccgaaaaaca aacggtagac ttcttacaga agaatgtttc atttgaaata
     2281 ccgaagtgga aagtacatgc aaaagacctt attgcttacc caaaacttac aggtaaaccc
     2341 gcagccacaa tagatccaga aatacaaaat tatgtatggg aaattgaaca caaaccatta
     2401 ccagaaaact ttattaacac attagctgaa acactcgtag atttacacaa cataccagaa
     2461 gaaaacatta acgttcagca tataaatatc aaaaccatac aagaaataaa aaatgacttt
     2521 caaagaagaa tgaataaagt taaagaaact tatggcgtat cagatgaatt atggaacaga
     2581 tggaaacaat ggttagaaaa cgacgaacta tggcctcgac atgcgaccat gatacatggg
     2641 gacttacatc caggacatat aatggtagat aaccaagcaa acgtcacagg tctcatagac
     2701 tggactgaag caacccactc cgacccatca atggacttta taggacacca tcgtgtattc
     2761 gacgacgaag gattagagca acttataaca gcatacggta aagctggagg tgaaatatgg
     2821 ccacgaatga aagagcatat aatagaactc aatgcagtat tcccaatgtt tatcgctgag
     2881 tttgctatgg aatcaggaga atcggcgtat gaaacgatgg cattgaaaga gttaggtatg
     2941 aaagagtaga acttatatta aaagaggccc attttaaaga cgaaggcaat cctgatgaaa
     3001 ttttaaaact gcgtttaatt agtgatggtc tttggttttc tataatgtat taaatatctg
     3061 gacatggaac aaatgcaaca aatggaaaga atcgttttcg aaatttctaa ctccttaaat
     3121 caggaggata aataaacggt cattttcatt gaaagcactt atataaattt catcaatttt
     3181 aatacctacc gtaaatacat ttcataagta ttaaacagat gattaaaatt tttagttaat
     3241 ttaaatattt atgatagaga tgaccttcaa atgaacggtt ctgttacaaa gaaaaaatct
     3301 atatttattt ttagtaagtt ttaattatag atatgtacac tttgagtaca ccctaaccat
     3361 acaaaaagaa ttgttgaaat tataacaatt aaaacgtatg attagggtgt atatttatta
     3421 tggagtgaag atgaatgatt ataggttatg cgagagtatc atcgatagat caaaatttag
     3481 aaagacaatt ggataattta aagacgtttg gtgtggagaa aatctttaca gagaaacagt
     3541 cgggaaagtc agtggaaaat agacctgtat ttcaagaagc actcaatttt gtcagaatgg
     3601 gagatcgatt cgttgtggaa tctattgatc gtttaggacg taactatgat gaaattattg
     3661 aaactgtgaa ttatttaaaa gaaaaagacg ttcagttaat gattaccagc ttacctatga
     3721 tgaatgaagt aattggcaat ccattactgg ataagtttat gaaagattta atcattcaaa
     3781 tattagcaat ggtttcagaa caagagagaa atgaaagtaa acgtcgacaa gcgcaaggga
     3841 ttcaagttgc gaaggaaaaa ggcgtatata aagggcgccc tttactttat tcaccaaatg
     3901 ctaaagaccc acagaaacgt gttatttatc atcgcgtggt ggaaatgtta gaagaaggca
     3961 aagcgattag taagattgcg aaagaagtta atatcacaag acaaacagtt tatagaatta
     4021 aacatgataa gggattatct tgataaattg attgtcaatg caaatgagcg tctctcacag
     4081 tgtctcaaat tccataacat attattgaat tgagatttta ataattatac aagaaaaaag
     4141 agtacgagtt cgcagctttc tatatagtaa ttgttttact aataaggtgt tttaaaatat
     4201 attataatgt aaaaagtatt tgacatttgt atcaaaaata tttacactca taaatgtcaa
     4261 atacttttta catttatgag gtgttataat gaatttaatt ccttttatta ttattttaat
     4321 tttttcttgt ttatggacgg ctataact
//
LOCUS       DAMQWL010000339         4178 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.guided.168, whole genome shotgun sequence.
ACCESSION   DAMQWL010000339 DAMQWL010000000
VERSION     DAMQWL010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 4178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4178
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.guided.168"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            63..788
                     /gene="sasD"
                     /locus_tag="PF788_003004"
     CDS             63..788
                     /gene="sasD"
                     /locus_tag="PF788_003004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_070002951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-wall-anchored protein SasD"
                     /protein_id="HDG6305174.1"
                     /translation="MKKLATVGSLIVTSTLVFSSMPFQNAHADTTSMNVSNKQSQNVQ
                     NHRPYGGVVPQGMTQAQYTELEKALPQLSAGSNMQDYNMKLYDATQNIADKYNVIITT
                     NVGVFKPHAVRDMNGHALPLTKDGNFYQTNVDANGVNHGGSEMVQNKTGHMSQQGHMN
                     QNTHMNQQPHMQQGHMQSSNHQMMSPKANMHSSNHQMNQSNKKVLPAAGESMTSSILT
                     ASIAALLLVSGLFLAFRRRSTNK"
     gene            complement(980..1735)
                     /locus_tag="PF788_003005"
     CDS             complement(980..1735)
                     /locus_tag="PF788_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDG6305175.1"
                     /translation="MEVVYVTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCAR
                     FDVSRMTLRQAIKLLAEDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARV
                     SMSSINYRVDLESEYTNHLFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVID
                     TFKVNTQNEDDMKTFVEQTIYSNAYQSDLKMSITKAPHFKNHSHVFDGDTHCWLIIET
                     LYAQTPYPIMINKWYIPQEISELTLTRIRQSDY"
     gene            1971..2678
                     /gene="deoD"
                     /locus_tag="PF788_003006"
     CDS             1971..2678
                     /gene="deoD"
                     /locus_tag="PF788_003006"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDG6305176.1"
                     /translation="MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNT
                     VRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENID
                     LYDVIIAQGASTDSNYVQQYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSD
                     IFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPE
                     ERERAFTDMIEIALSLV"
     gene            2685..4037
                     /gene="tet(38)"
                     /locus_tag="PF788_003007"
     CDS             2685..4037
                     /gene="tet(38)"
                     /locus_tag="PF788_003007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(38)"
                     /protein_id="HDG6305177.1"
                     /translation="MNVEYSKIKKAVPILLFLFVFSLVIDNSFKLISVAIADDLNISV
                     TTVSWQATLAGLVIGIGAVVYASLSDAISIRTLFIYGVILIIIGSIIGYIFQHQFPLL
                     LVGRIIQTAGLAAAETLYVIYVAKYLSKEDQKTYLGLSTSSYSLSLVIGTLSGGFIST
                     YLHWTNMFLIALIVVFTLPFLFKLLPKENNTNKAHLDFVGLILVATIATTVMLFITNF
                     NWLYMIGALIAIIVFALYIKNAQRPLVNKSFFQNKRYASFLFIVFVMYAIQLGYIFTF
                     PFIMEQIYHLQLDTTSLLLVPGYIVAVIVGALSGKIGEYLNSKQAIITAIILIALSLI
                     LPAFAVGNHISIFVISMIFFAGSFALMYAPLLNEAIKTIDLNMTGVAIGFYNLIINVA
                     VSVGIAIAAALIDFKALNFPGNDALSSHFGIILIILGLMSIVGLVLFVSLNRWTQSEK
                     "
BASE COUNT         1383 a          652 c          744 g         1399 t
ORIGIN      
        1 tttcttttgt aatcgtatga taatgtaaat gtaatcaaat tgtaatataa ggggacaaga
       61 caatgaaaaa attagcaaca gtaggttctt taattgtaac aagcacttta gtattctcaa
      121 gtatgccttt tcaaaatgcg catgccgaca caacttcaat gaatgtgtcg aataaacaaa
      181 gccaaaatgt acaaaatcat cgtccttatg gcggagtagt accacaagga atgacgcaag
      241 cacaatatac tgaattagag aaagctttac cccaattaag cgctggcagt aatatgcaag
      301 actataatat gaaattgtat gatgcgacgc aaaatattgc tgataaatac aatgtgataa
      361 ttacaactaa tgtaggggta tttaaaccac atgctgttag agatatgaat ggccatgcgt
      421 tacctttaac aaaagatggc aatttttatc aaacgaatgt agatgcaaat ggtgttaatc
      481 atggtggtag tgaaatggtg caaaataaaa caggtcatat gagtcaacaa ggccatatga
      541 atcagaacac acacatgaac caacagccac acatgcaaca aggtcatatg caatcatcaa
      601 accatcaaat gatgagtcca aaagcaaata tgcattcatc aaatcatcaa atgaaccaaa
      661 gtaacaaaaa agttttacca gctgctggtg aaagtatgac atcaagtatt cttactgcaa
      721 gtattgccgc actactatta gtatctgggt tattcttagc atttagacga cgttcaacaa
      781 ataaataaac ataatacgat taataataga aaaatcgtgt gattatctga gcgagcctag
      841 gacataaatc aatgtcctag gctcgctaat gttatattgg cagtagttga ctgaatgaaa
      901 ttgcgcttgt aacaagcttt tccatttctt accaactccc taaatagtca tcaaaaaatt
      961 tcttatattt taataatttt taataatccg attgtcttat acgtgtcagt gttaattcag
     1021 atatttcctg tggaatatac cacttattaa tcataattgg ataaggtgtt tgtgcgtaca
     1081 gtgtttcaat aatcagccaa caatgtgtat caccatcaaa cacgtgacta tgatttttga
     1141 agtggggcgc tttggtaata gacattttta aatctgattg atatgcattg ctataaatcg
     1201 tttgctcaac gaatgtcttc atgtcgtctt cgttttgtgt attcacttta aatgtgtcaa
     1261 tgacatttaa cggtataaag gtaaagcaaa atgcatcagc ttgcttagaa tgattgtcct
     1321 ttttttgata atagcgttcc attgcaatga cggcagaagg atggtttgca aacaaatgat
     1381 ttgtatattc actttctaaa tcaacacgat aattaattga tgacatagat acgcgagcta
     1441 gcaatatttg atcaagtgga tgcttaaatt gatccatact tgaagcgtgt tgggcatttg
     1501 tttgtggaat aacaaagtgt cccttccctc ttgtactctc tacgatgcca tcttcggcta
     1561 acaattttat agcttggcgc aaagtcatac gactgacatc aaagcgcgca caaagttcct
     1621 tttcagtagg taatgcatgg ccactcggat attttcctat ttgaatttct ttatataacg
     1681 tattataaat cgttaaaaat tttggttgtg tttgcgtcac gtagacaacc tccataaagt
     1741 tacttaatca ctctcatcat acaataattt ttactcaaat tggaaaaatt ataaaaatta
     1801 aatatagata ggctttgaaa attagtttta tacaaggtta gtagctgtaa ctgtaaaatg
     1861 ttcttaatat tgtcaaaatg taatgcttga aagcgctttt aaaaaatatt attatataca
     1921 tggttagaca aatagacaaa tcactataca aatattggga ggaatatttt atgaaatcaa
     1981 caccacacat taaaccaatg aatgacgtcg aaattgcaga aacggttcta ttgccaggag
     2041 atccgttaag agctaagttc attgcagaaa cttatttgga tgatgtggaa cagttcaata
     2101 cagtgcgaaa catgtttggt tttaccggaa catataaagg taaaaaagtt tctgtcatgg
     2161 gttcaggtat gggtatgcca tctattggca tttactctta tgaattaatt catacatttg
     2221 gttgtaaaaa attaattcgc gttggctctt gtggcgcgat gcaagaaaac attgatttat
     2281 atgatgtgat tattgcacaa ggtgcctcta ctgattcaaa ttacgttcaa caatatcaat
     2341 taccaggtca ttttgcgcca attgcttctt atcaattatt agaaaaagca gttgaaacag
     2401 cacgtgacaa aggtgtacgt catcatgtag gtaatgtgtt atcaagtgat attttctata
     2461 acgcggatac aacagcgagt gaacgttgga tgcgtatggg tattttaggt gtagaaatgg
     2521 aatcagctgc attatacatg aatgcaattt acgctggtgt cgaagcatta ggtgtgttca
     2581 cagtgagcga tcatttaatt catgaaacgt caacaacacc tgaggaaagg gaacgtgcat
     2641 ttacagatat gattgaaatt gcactgtcat tggtgtagat gattatgaat gttgaatatt
     2701 ctaaaataaa gaaagcagta cctattttat tattcttatt tgtattcagt ttggttatag
     2761 acaactcatt taaattgatt tctgtagcca ttgctgatga cttaaacata tctgtaacga
     2821 cagtaagttg gcaagcgaca ttagccggtt tagtaattgg tattggcgct gtagtatacg
     2881 cttcattatc tgatgccatt agtatacgca cactatttat ttatggcgtg atattaatca
     2941 ttatcggatc aattattggt tacattttcc aacatcaatt cccattactt ttagttggac
     3001 gtattattca aactgccggt ttagctgctg cagagacatt atatgtgata tatgttgcaa
     3061 agtatctttc taaagaggac cagaagactt accttggctt aagtacgagc agttattcct
     3121 tgtcattagt tatcggtaca ttatcaggtg gatttatttc tacgtattta cactggacaa
     3181 atatgttttt aattgcatta atcgtagtat ttacgttgcc attcctattt aaattattac
     3241 caaaagaaaa taatacgaat aaagctcatt tagattttgt tggcttaatt ctagtggcaa
     3301 ctattgctac aacagtcatg ctgtttatta cgaactttaa ttggttatat atgattggtg
     3361 ccttaattgc gattatcgtt tttgcgctat atattaaaaa tgcgcaacgt ccattagtaa
     3421 ataaatcatt tttccaaaat aaacgttatg cttcattttt atttatagta tttgtaatgt
     3481 atgctatcca attgggttat atttttacgt tcccattcat aatggagcaa atttatcatc
     3541 tgcaactaga cacaacatca ctgttattag taccgggtta tatagtagca gtcattgttg
     3601 gtgcactaag tggtaaaatc ggcgaatatc tgaattcaaa acaagcgatt atcacagcaa
     3661 ttattttaat agcactgagc ttgattttac ctgcatttgc agtaggtaat cacatttcaa
     3721 tcttcgtcat ttctatgata ttctttgcag gtagctttgc tttaatgtat gcacctttac
     3781 ttaacgaagc cattaaaaca atagatctta atatgacagg tgtggctatt ggtttttata
     3841 atttaattat taatgtggcg gtatctgtag gtattgcgat tgctgcggct ctaatcgatt
     3901 ttaaagcatt aaatttccca ggcaatgatg cattaagttc acatttcggt attattttaa
     3961 ttattttagg tttaatgagt attgtcggat tagttttatt cgtcagctta aatcgttgga
     4021 cacaatctga aaaataaata gatataaatt cgcgagatat attcgtattt atagtaaaat
     4081 taaataaaga gattatataa cacgaggagt agtaagtatg aaatttgaga aatatataga
     4141 tcacacttta ttgaagcctg agtcaacacg tacgcaaa
//
LOCUS       DAMQWL010000340         3226 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.guided.198, whole genome shotgun sequence.
ACCESSION   DAMQWL010000340 DAMQWL010000000
VERSION     DAMQWL010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 3226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.guided.198"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            181..816
                     /locus_tag="PF788_003008"
                     /pseudo
     CDS             181..816
                     /locus_tag="PF788_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491779.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase"
     gene            813..1343
                     /gene="sat4"
                     /locus_tag="PF788_003009"
     CDS             813..1343
                     /gene="sat4"
                     /locus_tag="PF788_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="streptothricin N-acetyltransferase Sat4"
                     /protein_id="HDG6305178.1"
                     /translation="MITEMKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEA
                     PYLKSYQDEEDEEDEEADCLEYIDNTDKIIYLYYQDDKCVGKVKLRKNWNRYAYIEDI
                     AVCKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDT
                     MLYANFEKAVFWYLRF"
     gene            1436..2230
                     /locus_tag="PF788_003010"
                     /note="aph(3')-IIIa"
     CDS             1436..2230
                     /locus_tag="PF788_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase
                     APH(3')-IIIa"
                     /protein_id="HDG6305179.1"
                     /translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLK
                     MTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEY
                     EDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
                     EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKW
                     YDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
     gene            2506..3077
                     /locus_tag="PF788_003011"
                     /pseudo
     CDS             2506..3077
                     /locus_tag="PF788_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079940.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
BASE COUNT         1086 a          511 c          732 g          897 t
ORIGIN      
        1 ttcgccatgc cacgaaatta gcatcatgct agcaagttaa acgaacactg acatgatata
       61 ttagtgatta gctatatttt ttactttgca acagaaccat catttttatt aaaatactct
      121 tttgtaaaat ctttctgctc ttcaatgtat ttaatttctt tacctctaaa tctattatag
      181 ctatttgatg attacaataa aattgatctt accttattgc ccttggaaga gttagataat
      241 tacctaaagg gcgataaatt aataaaggtt ctaattgata aagattgtag aattaaaagg
      301 gacatagttc cgactgatat agattatcat gtaagaaagc caagcgcaag ggagtatgat
      361 gattgctgca atgaattttg gaatgtaaca ccttatgtta ttaaaggatt gtgccgtaag
      421 gaaattttat ttgctattga tcattttaat cagattgttc gccatgagct gctgagaatg
      481 atatcatgga aggtcggcat cgaaacaggc tttaaatgaa gtgtaggcaa gaactataag
      541 tttattgaaa ggtatatatc cgaggatttg tgggagaaac ttttgtccac ctaccggatg
      601 gattcctatg aaaacatatg ggaagcatta tttctatgcc atcaattgtt cagggcggta
      661 tccggtgagg tggcggaaag gcttcattat gcctatccgg agtatgatag gaatataaca
      721 aaatatacca gggacatgta taaaaaatac actggtaaaa ccggctgcct ggatagcaca
      781 tatgccgctg atatagaaga gaggcgggaa cagtgattac agaaatgaaa gcagggcacc
      841 tgaaagatat cgataaaccc agcgaaccat ttgaggtgat aggtaagatt ataccgaggt
      901 atgaaaacga gaattggacc tttacagaat tactctatga agcgccatat ttaaaaagct
      961 accaagacga agaggatgaa gaggatgagg aggcagattg ccttgaatat attgacaata
     1021 ctgataagat aatatatctt tactaccaag acgataaatg cgtcggaaaa gttaaactgc
     1081 gaaaaaattg gaaccggtac gcttatatag aagatatcgc cgtatgtaag gatttcaggg
     1141 ggcaaggcat aggcagcgcg cttatcaata tatctataga atgggcaaag cataaaaact
     1201 tgcatggact aatgcttgaa acccaggaca ataaccttat agcttgtaaa ttctatcata
     1261 attgtggttt caaaatcggc tccgtcgata ctatgttata cgccaacttt gaaaaagctg
     1321 ttttctggta tttaaggttt tagaatgcaa ggaacagtga attggagttc gtcttgttat
     1381 aattagcttc ttggggtatc tttaaatact gtagaaaaga ggaaggaaat aataaatggc
     1441 taaaatgaga atatcaccgg aattgaaaaa actgatcgaa aaataccgct gcgtaaaaga
     1501 tacggaagga atgtctcctg ctaaggtata taagctggtg ggagaaaatg aaaacctata
     1561 tttaaaaatg acggacagcc ggtataaagg gaccacctat gatgtggaac gggaaaagga
     1621 catgatgcta tggctggaag gaaagctgcc tgttccaaag gtcctgcact ttgaacggca
     1681 tgatggctgg agcaatctgc tcatgagtga ggccgatggc gtcctttgct cggaagagta
     1741 tgaagatgaa caaagccctg aaaagattat cgagctgtat gcggagtgca tcaggctctt
     1801 tcactccatc gacatatcgg attgtcccta tacgaatagc ttagacagcc gcttagccga
     1861 attggattac ttactgaata acgatctggc cgatgtggat tgcgaaaact gggaagaaga
     1921 cactccattt aaagatccgc gcgagctgta tgatttttta aagacggaaa agcccgaaga
     1981 ggaacttgtc ttttcccacg gcgacctggg agacagcaac atctttgtga aagatggcaa
     2041 agtaagtggc tttattgatc ttgggagaag cggcagggcg gacaagtggt atgacattgc
     2101 cttctgcgtc cggtcgatca gggaggatat cggggaagaa cagtatgtcg agctattttt
     2161 tgacttactg gggatcaagc ctgattggga gaaaataaaa tattatattt tactggatga
     2221 attgttttag tacctagatt tagatgtcta aaaagcttta actacaagct ttttagacat
     2281 ctaatctttt ctgaagtaca tccgcaactg tccatactct gatgttttat atcttttcta
     2341 aaagttcgct agatagagtt ctatattaga gatgtaaaga gttttggtga agaggtttgt
     2401 gagtatggct tttataacca gggtgcaatg agaagcacta acagcagcta gcttaagaac
     2461 gcataggata tactttttat ggaagtcaca gaggaggaat aaaatttgaa caggattaac
     2521 agagtaacct ctattcttat tcagctgcaa tcaaaaaaat aattcctgcc aaagaaattg
     2581 cacagcgatt taatataagc ttaaggacag tttacagaga tatccggaca cttgaagaag
     2641 ccggaatacc aattggatct gaggccggaa aaggatattt tcttgtagag ggcttcctac
     2701 ttctgccggt aatgtttaca gcggcggaag tgggtgcatt gattacagca gggaaatttt
     2761 taaattgcca tggagatgaa tcatttataa aggattttga ttcagctatg tataaaatca
     2821 aatctatttt gaagcatggt gaaaaaaact atgcacagga gttggagaac agtattaacg
     2881 tgtacagcac atctggacag aaaaatacat tggcggataa cgttattgca gcaattcaga
     2941 ctgcaatctg caataaaagg gtaatatcaa ttcaatatcc tgcatcagga gggcaagaac
     3001 cggaaagcag aatgatagag cctatatcac tggggtttta tgaacagaac tggtacttaa
     3061 tcggttttgc aggctaagaa atgaatatag gaattttcgt gtggatcgga ttaaaagcat
     3121 ttgcatagaa gaagagctct gtcaaagcca tgatggctct ttggaacaaa tattaaaaca
     3181 aatgctggtt ctgttgcaaa gtaaaaaaat atagctaacc actaat
//
LOCUS       DAMQWL010000341         2966 bp    DNA     linear   BCT 14-JAN-2023
DEFINITION  TPA_asm: Staphylococcus aureus strain 120381
            SAMN02649932-rid16691783.guided.204, whole genome shotgun sequence.
ACCESSION   DAMQWL010000341 DAMQWL010000000
VERSION     DAMQWL010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN02649932
            Sequence Read Archive: SRR1178246
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001571696.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001571696.1
            Genome Coverage       :: 38x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/10/2023 21:05:30
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,015
            CDSs (total)                      :: 2,955
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 31 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN02649932-rid16691783.guided.204"
                     /strain="120381"
                     /isolation_source="Human body"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2010"
     gene            complement(<1..1407)
                     /gene="mec"
                     /locus_tag="PF788_003012"
     CDS             complement(<1..1407)
                     /gene="mec"
                     /locus_tag="PF788_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001801873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBP2a family beta-lactam-resistant peptidoglycan
                     transpeptidase"
                     /protein_id="HDG6305180.1"
                     /translation="MMKKIKIVPLILIVVVVGFGIYFYASKDKEINNTIDAIEDKNFK
                     QVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVDAQYKI
                     KTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQSIHIENLKSERGKILDRNN
                     VELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTV
                     KKMDEYLSDFAKKFHLTTNETESRNYPLGKATSHLLGYVGPINSEELKQKEYKGYKDD
                     AVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQ
                     KSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPL
                     LNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVV
                     NGNIDLKQAIESSDNIFFA"
     gene            1504..2490
                     /locus_tag="PF788_003013"
     CDS             1504..2490
                     /locus_tag="PF788_003013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactam sensor/signal transducer MecR1"
                     /protein_id="HDG6305181.1"
                     /translation="MLSSFLMLSIISSLLTICVIFLVRMLYIKYTQNIMSHKIWLLVL
                     VSTLIPLIPFYKISNFTFSKDMMNRNVSDTTSSVSHMLDGQQSSVTKDLAINVNQFET
                     SNITYMILLIWVFGSLLCLFYMIKAFRQIDVIKSSSLESSYLNERLKVCQSKMQFYKK
                     HITISYSSNIDNPMVFGLVKSQIVLPTVVVETMNDKEIEYIILHELSHVKSHDLIFNQ
                     LYVVFKMIFWFNPALYISKTMMDNDCEKVCDRNVLKILNRHEHIRYGESILKCSILKS
                     QHINNVAAQYLLGFNSNIKERVKYIALYDSMPKPNRNKRIVAYIVCSISSFT"
     gene            2462..2722
                     /locus_tag="PF788_003014"
     CDS             2462..2722
                     /locus_tag="PF788_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3387 domain-containing protein"
                     /protein_id="HDG6305182.1"
                     /translation="MYVVYRASHETAKEALGDKELRAIAHELTKTVKDNMSVDWSKRD
                     SAKAKMRVQVRRLLKKYGYPPDLQKMAVEQVVEQAELMASQQ"
     gene            complement(2713..>2966)
                     /locus_tag="PF788_003015"
     CDS             complement(2713..>2966)
                     /locus_tag="PF788_003015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011274780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HDG6305183.1"
                     /translation="VFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAE
                     NNQKIYKKDNFYIISIEIVFFHLSKNFMSRTHYDLFFYC"
BASE COUNT          943 a          451 c          449 g         1123 t
ORIGIN      
        1 agcaaagaaa atgttatctg atgattctat tgcttgtttt aagtcgatat taccatttac
       61 cacttcatat cttgtaacgt tgtaaccacc ccaagattta tctttttgcc aacctttacc
      121 atcgatttta taacttgttt tatcgtctaa tgttttgtta tttaacccaa tcattgctgt
      181 taatattttt tgagttgaac ctggtgaagt tgtaatctgg aacttgttga gcagaggttc
      241 ttttttatct tcggttaatt tattatattc ttcgttactc atgccataca taaatggata
      301 gacgtcatat gaaggtgtgc ttacaagtgc taataattca cctgtttgag ggtggatagc
      361 agtacctgag ccataatcat ttttcatgtt gttataaata ctcttttgaa ctttagcatc
      421 aatagttagt tgaatatctt tgccatcttt tttctttttc tctattaatg tatgtgcgat
      481 tgtattgcta ttatcgtcaa cgattgtgac acgatagcca tcttcatgtt ggagcttttt
      541 atcgtaaagt ttttcgagtc cctttttacc aataactgca tcatctttat agcctttata
      601 ttctttttgt tttaattctt cagagttaat gggaccaaca taacctaata gatgtgaagt
      661 cgcttttcct agaggatagt tacgactttc tgtttcatta gttgtaagat gaaatttttt
      721 tgcgaaatca cttaaatatt catccatttt tttaacggtt ttaagtggaa cgaaggtatc
      781 atcttgtacc caattttgat ccatttgttg tttgatatag tcttcagaaa tacttagttc
      841 tttagcgatt gctttataat cttttttaga tacattcttt ggaacgatgc ctatctcata
      901 tgctgttcct gtattggcca attccacatt gtttcggtct aaaattttac cacgttctga
      961 ttttaaattt tcaatatgta tgctttggtc tttctgcatt cctggaataa tgacgctatg
     1021 atcccaatct aacttccaca taccatcttc tttaacaaaa ttaaattgaa cgttgcgatc
     1081 aatgttaccg tagtttgttt taattttata ttgagcatct actcgttttt tatttttaga
     1141 tacttttttt attttacgat cctgaatgtt tatatcttta acgcctaaac tattatatat
     1201 ttttatcgga cgttcagtca tttctacttc accattatcg cttttagaaa tataactgct
     1261 atctttataa acttgtttga aatttttatc ttcaattgca tcaatagtat tattaatttc
     1321 tttatctttt gaagcataaa aatatatacc aaacccgaca actacaacta ttaaaataag
     1381 tggaacaatt tttatctttt tcatcaatat actccttata taagactaca tttgtagtat
     1441 attacaaatg tagtatttat gtcaaaataa tgttataatt tttgtgatat ggaggtgtag
     1501 aaggtgttat catctttttt aatgttaagt ataatcagtt cattgctcac gatatgtgta
     1561 atttttttag tgagaatgct ctatataaaa tatactcaaa atattatgtc acataagatt
     1621 tggttattag tgctcgtctc cacgttaatt ccattaatac cattttacaa aatatcgaat
     1681 tttacatttt caaaagatat gatgaatcga aatgtatctg acacgacttc ttcggttagt
     1741 catatgttag atggtcaaca atcatctgtt acgaaagact tagcaattaa tgttaatcag
     1801 tttgagacct caaatataac gtatatgatt cttttgatat gggtatttgg tagtttgttg
     1861 tgcttatttt atatgattaa ggcattccga caaattgatg ttattaaaag ttcgtcattg
     1921 gaatcgtcat atcttaatga acgacttaaa gtatgtcaaa gtaagatgca gttctacaaa
     1981 aagcatataa caattagtta tagttcaaac attgataatc cgatggtatt tggtttagtg
     2041 aaatcccaaa ttgtactacc aactgtcgta gtcgaaacca tgaatgacaa agaaattgaa
     2101 tatattattc tacatgaact atcacatgtg aaaagtcatg acttaatatt caaccagctt
     2161 tatgttgttt ttaaaatgat attctggttt aatcctgcac tatatataag taaaacaatg
     2221 atggacaatg actgtgaaaa agtatgtgat agaaacgttt taaaaatttt gaatcgccat
     2281 gaacatatac gttatggtga atcgatatta aaatgctcta ttttaaaatc tcagcacata
     2341 aataatgtgg cagcacaata tttactaggt tttaattcaa atattaaaga acgtgttaag
     2401 tatattgcac tttatgattc aatgcctaaa cctaatcgaa acaagcgtat tgttgcgtat
     2461 attgtatgta gtatatcgag cttcacatga aacagctaaa gaagctttgg gcgataaaga
     2521 gttaagagcc attgcacatg agttaactaa aacagttaag gataacatga gtgttgattg
     2581 gtctaaacga gacagtgcta aagctaaaat gagagttcaa gttagacgcc tattaaagaa
     2641 atatggctat ccaccagatc ttcaaaaaat ggctgtggaa caagttgtag agcaagcaga
     2701 attaatggca agtcagcaat aaaaaaataa atcataatga gtccgggaca taaagttctt
     2761 ggataagtga aaaaagacaa tttctattga aataatatag aaattgtctt ttttataaat
     2821 tttttgatta ttttcagctc gttgagctac tacttttctt atattaagtg ccattaatac
     2881 aaaaccaagt tctcttttga ctttattgag tcctcggaca gacatccgag tgaaacccaa
     2941 aatagccttc ataaatccaa aaacag
//
